BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044928
MIEEYDRLAQNQNTRSARLRLFLFTKGEDSVSRASSISSLLDASTNREHWFFDAINNGAA
PGSGLERGRSEASSIFSEAPDYLFGLENSDETQPRELKPKSRLMLHDNVSVSDPGSPAPV
VSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSELQAVQQTGYSGQP
MWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVG
YHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMI
PGGEELRKSGSDATPGRISQS

High Scoring Gene Products

Symbol, full name Information P value
AT4G05150 protein from Arabidopsis thaliana 7.1e-45
PDE331
PIGMENT DEFECTIVE 331
protein from Arabidopsis thaliana 3.0e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044928
        (321 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2115658 - symbol:AT4G05150 species:3702 "Arabi...   472  7.1e-45   1
TAIR|locus:2038836 - symbol:PDE331 "PIGMENT DEFECTIVE 331...   118  3.0e-05   2


>TAIR|locus:2115658 [details] [associations]
            symbol:AT4G05150 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0004674 "protein
            serine/threonine kinase activity" evidence=IDA] [GO:0046777
            "protein autophosphorylation" evidence=IDA] [GO:0048767 "root hair
            elongation" evidence=RCA] InterPro:IPR000270 Pfam:PF00564
            SMART:SM00666 EMBL:CP002687 GO:GO:0004674 GO:GO:0046777
            EMBL:AY054238 IPI:IPI00533861 RefSeq:NP_567290.1 UniGene:At.4069
            UniGene:At.71567 ProteinModelPortal:Q940N7 PRIDE:Q940N7
            EnsemblPlants:AT4G05150.1 GeneID:825863 KEGG:ath:AT4G05150
            TAIR:At4g05150 HOGENOM:HOG000090561 InParanoid:Q940N7 OMA:GNHMVQP
            PhylomeDB:Q940N7 ProtClustDB:CLSN2689359 Genevestigator:Q940N7
            Uniprot:Q940N7
        Length = 477

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 139/359 (38%), Positives = 184/359 (51%)

Query:     1 MIEEYDRLAQNQNTRSARLRLFLFTKG----EXXXXXXXXXXXXXXXXTNREHWFFDAIN 56
             M++EYDR+AQNQN R++RLRLFLFTK     E                 NRE WF DA+N
Sbjct:   138 MMDEYDRVAQNQNPRASRLRLFLFTKNVAGEEDNDSRASSISSLLDSSVNREQWFLDALN 197

Query:    57 NGAAP--------GSG--LERGRSEASSIFSEAPDYLFGLENSDETQP-RELKPKS-RLM 104
              G++         GSG   ER RSE SSI SE PDYLFGL+N DET P  EL+ +  R  
Sbjct:   198 LGSSAAATAVSNGGSGRVFERVRSEVSSIVSEVPDYLFGLDNFDETAPPHELRDRDPRAK 257

Query:   105 LHDNVS-VSDPGSPAPVVSSPFCSTSSGPTVP-SMPDLPP-VKTKPDNPAPVLESKHSGQ 161
             +   VS +SDPGSP   V SP+ STSS P +  S P+LPP V  KP++P PV   K + Q
Sbjct:   258 IQREVSTLSDPGSPRRDVPSPYGSTSSAPVMRISTPELPPPVFIKPESPEPVSTPKSNPQ 317

Query:   162 IDGFSELQAVQQTGYSGQPMWHYV----SETRYSSPAVQQKTPVYYVPG--P----VQTG 211
              +     Q +QQ+       W Y      +  Y    + Q +PVYYVPG  P    VQ G
Sbjct:   318 PE-----QVMQQSNLPVNSQWQYAPGPGQQVHYQGHTIHQ-SPVYYVPGSVPGNHMVQQG 371

Query:   212 NAPVQQAG----PIR--AQYVPQYQVPPGGQIPVGYHXXXXXXXXXXXXAVRSVVTMDHS 265
             N  VQ       P++   QY+ QY       +P+GYH                 V     
Sbjct:   372 NHMVQPGNHMVQPVQMPGQYLQQYH-----HVPMGYHQPQTHQMAGPGQVYGGTV----- 421

Query:   266 YDQPVRVVSADGVNQQVYYGVRNAGLVPGYP---GMMIPGGEELR--KSGSDATPGRIS 319
               +PV +++ DG+N+  YYG++  G V  Y    GM++PG EE +  ++ +D+  GR S
Sbjct:   422 --RPV-MMAVDGMNRTGYYGMKTPGPVQMYQHHTGMVVPGVEEQQQYRTETDSDTGRAS 477


>TAIR|locus:2038836 [details] [associations]
            symbol:PDE331 "PIGMENT DEFECTIVE 331" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000270 Pfam:PF00564
            SMART:SM00666 GO:GO:0005829 GO:GO:0005634 EMBL:CP002685
            EMBL:AC006200 ProtClustDB:CLSN2687650 EMBL:AY070060 EMBL:AY117302
            IPI:IPI00548472 PIR:F84421 RefSeq:NP_565256.1 UniGene:At.19855
            UniGene:At.72006 UniGene:At.74187 UniGene:At.74214
            ProteinModelPortal:Q9ZU48 IntAct:Q9ZU48 PRIDE:Q9ZU48 ProMEX:Q9ZU48
            EnsemblPlants:AT2G01190.1 GeneID:814647 KEGG:ath:AT2G01190
            TAIR:At2g01190 InParanoid:Q9ZU48 OMA:YDRTISA PhylomeDB:Q9ZU48
            ArrayExpress:Q9ZU48 Genevestigator:Q9ZU48 Uniprot:Q9ZU48
        Length = 720

 Score = 118 (46.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 50/169 (29%), Positives = 77/169 (45%)

Query:     1 MIEEYDR-LAQNQNTRSARLRLFLFT-KGEXXXXXXXXXXXXXXXXTNREHWFFDAINNG 58
             MIEEYDR ++ + +T+ +RLRLFLFT K E                   + WF +A+N+ 
Sbjct:   155 MIEEYDRTISASNSTKPSRLRLFLFTSKPEATQSMGQILESSAKS----DDWFLNALNSA 210

Query:    59 AAPGSG-------LER--GRSEASSIFSEAPDY--LFGLENSDET--QPRELKPKSRLML 105
                  G       + R  G  +A ++ S + D     G + S ++  Q +   P+ +   
Sbjct:   211 GLLNRGFSDSDTNVNRLLGLDDALALRSNSGDNNNRDGDDGSVKSAKQQQPPPPQQQEQQ 270

Query:   106 HDNVSVSD-PGSPAPVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPV 153
                  V+  P SP    SS F STSS P   S+ +LPP++   + P  V
Sbjct:   271 QGGQDVNCLPDSPMLDTSSSFGSTSSSP---SLANLPPIRVHVEEPGGV 316

 Score = 54 (24.1 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query:   161 QIDGFSELQAVQQTGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQ-QAG 219
             Q  G+S+++   Q+G +G P + Y     Y   A    T +YY   P+  G+A  Q   G
Sbjct:   640 QFMGYSQIRHPPQSGSAGNPNYGY----EYVDNA---HTQIYYTQ-PM--GHAQYQTMTG 689

Query:   220 PIRAQYVP 227
             P  A  +P
Sbjct:   690 PPPAMVMP 697

 Score = 49 (22.3 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query:   196 QQKTPVYYVPGPV--QTGNAPVQQ-------AGPIRAQYVPQYQVPP 233
             QQ  PVYYV  PV  +  + PV Q       AG I + +     +PP
Sbjct:   551 QQPYPVYYVTAPVPPRPYSMPVPQSPSVSDAAGSIPSNHPNSTMMPP 597


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.131   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      321       293   0.00091  115 3  11 23  0.47    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  199 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.78u 0.07s 30.85t   Elapsed:  00:00:01
  Total cpu time:  30.78u 0.07s 30.85t   Elapsed:  00:00:01
  Start:  Fri May 10 17:36:48 2013   End:  Fri May 10 17:36:49 2013

Back to top