BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044928
         (321 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LSN|A Chain A, Solution Structure Of Pfv Rnase H Domain
          Length = 165

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 205 PGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHXXXXXXXXXXXXAVRSVVTMDH 264
           P P ++ NA +   G + A Y P+YQV     IP+G H            A +  + +  
Sbjct: 20  PDPTKSNNAGM---GIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-- 74

Query: 265 SYDQPVRVVS-----ADGVNQQVYYGVRN 288
               PV V++     A+  N+++ Y   N
Sbjct: 75  --PGPVLVITDSFYVAESANKELPYWKSN 101


>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
 pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
 pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
 pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
          Length = 718

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 87  ENSDETQPRELKPKSRLMLH--DNVSVSDPGSPAPVVSSPFCSTSSGPTVPSMPDLPP 142
           EN +  Q R  + +++ +LH   +V V+ P +P PV +SP   + + P VP++P  PP
Sbjct: 23  ENPELFQLRPAQNRAQKLLHYLGHVMVNGPTTPIPVKASP---SPTDPVVPAVPIGPP 77


>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
 pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
 pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
 pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
          Length = 718

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 87  ENSDETQPRELKPKSRLMLH--DNVSVSDPGSPAPVVSSPFCSTSSGPTVPSMPDLPP 142
           EN +  Q R  + +++ +LH   +V V+ P +P PV +SP   + + P VP++P  PP
Sbjct: 23  ENPELFQLRPAQNRAQKLLHYLGHVMVNGPTTPIPVKASP---SPTDPVVPAVPIGPP 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,706,558
Number of Sequences: 62578
Number of extensions: 395493
Number of successful extensions: 572
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 4
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)