BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044928
         (321 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7IFD6|LPXK_XANP2 Tetraacyldisaccharide 4'-kinase OS=Xanthobacter autotrophicus
           (strain ATCC BAA-1158 / Py2) GN=lpxK PE=3 SV=1
          Length = 343

 Score = 38.5 bits (88), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 183 HYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQY 229
           H V +  + +P++ +   V  V G V  GNA V  AGP+RA  +PQ 
Sbjct: 136 HIVMDDGFQNPSLHKDVSVLVVDGMVGVGNACVTPAGPLRAPLLPQL 182


>sp|Q02384|SOS2_MOUSE Son of sevenless homolog 2 OS=Mus musculus GN=Sos2 PE=1 SV=2
          Length = 1333

 Score = 33.9 bits (76), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 31/101 (30%)

Query: 78   EAPDYLFGLENSDETQPRELKPKSRLMLHDNVSVSDPG-----------------SPAPV 120
            E  DYLF    S E +PR  K   R       S+  PG                  P P+
Sbjct: 1003 EFTDYLF--NKSLEIEPRNCKQPPRFPRKSTFSLKSPGIRPNAGRHGSTSGTLRGHPTPL 1060

Query: 121  VSSPFC------------STSSGPTVPSMPDLPPVKTKPDN 149
               P+             ST S PT P+ P  PPV    D+
Sbjct: 1061 EREPYKISFSRIAETELESTVSAPTSPNTPSTPPVSASSDH 1101


>sp|A8I6A3|LPXK_AZOC5 Tetraacyldisaccharide 4'-kinase OS=Azorhizobium caulinodans (strain
           ATCC 43989 / DSM 5975 / ORS 571) GN=lpxK PE=3 SV=1
          Length = 338

 Score = 32.0 bits (71), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 183 HYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQY 229
           H V +  + +P++ +   +  + G    GN  V  AGP+RA   PQ 
Sbjct: 137 HVVMDDGFQNPSLAKDVSLLVIDGEAGVGNGRVLPAGPLRAPLAPQL 183


>sp|Q5ALX5|SSN2_CANAL Mediator of RNA polymerase II transcription subunit 13 OS=Candida
           albicans (strain SC5314 / ATCC MYA-2876) GN=SSN2 PE=3
           SV=1
          Length = 1665

 Score = 31.6 bits (70), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%)

Query: 88  NSDETQPRELKPKSRLMLHDNVSVS---------DPGSPAPVVSSPFCSTS 129
           + +  +P+E KP    +L D +++          DPG+P PVV +P  S++
Sbjct: 501 DKENFKPKETKPSYIDILKDKMTIEKIVNSPDYKDPGAPLPVVPTPLVSST 551


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,688,495
Number of Sequences: 539616
Number of extensions: 6321132
Number of successful extensions: 16003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 15612
Number of HSP's gapped (non-prelim): 602
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)