Query 044928
Match_columns 321
No_of_seqs 80 out of 82
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 14:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 11.8 1.8E+02 0.0062 23.9 3.4 23 2-29 68-90 (103)
2 2jxc_B Stonin-2, stoned B; end 10.6 2.5E+02 0.0086 19.9 3.3 13 134-146 5-17 (45)
3 2h80_A STAR-related lipid tran 8.1 57 0.0019 25.9 -0.9 18 220-240 31-48 (81)
4 1u8b_A ADA polyprotein; protei 6.2 1.9E+02 0.0064 22.2 1.2 15 275-292 17-31 (133)
5 2d8m_A DNA-repair protein XRCC 5.7 2.9E+02 0.01 21.6 2.2 13 47-59 85-97 (129)
6 2dky_A RHO-GTPase-activating p 5.5 78 0.0027 25.6 -1.3 17 221-240 34-50 (91)
7 2xz8_A Peptidoglycan-recogniti 5.0 1.4E+02 0.0049 25.1 -0.1 32 225-256 56-88 (150)
8 3oru_A DUF1989 family protein; 4.5 3.1E+02 0.011 24.9 1.7 41 260-304 3-43 (234)
9 4f54_A Uncharacterized protein 4.1 1.2E+02 0.004 26.7 -1.4 74 2-87 13-90 (197)
10 4aor_D Trypsin inhibitor 3; hy 3.9 1.5E+02 0.0051 20.3 -0.7 8 16-23 28-35 (37)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=11.84 E-value=1.8e+02 Score=23.90 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=15.4
Q ss_pred hhhhhhhhccCCCCCceeEEEeecCCCC
Q 044928 2 IEEYDRLAQNQNTRSARLRLFLFTKGED 29 (321)
Q Consensus 2 MeEYDRL~~~ss~kpaRLRLFLFP~kp~ 29 (321)
+|+|||-. ...-||+||-+.+..
T Consensus 68 IellDrss-----~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 68 VELLDRSI-----HMKSLKILLVINGST 90 (103)
T ss_dssp HHHHHHCS-----SCCSEEEEEEECCCC
T ss_pred HHHHccCC-----cccceEEEEecCCCC
Confidence 68899953 344577788776643
No 2
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=10.59 E-value=2.5e+02 Score=19.95 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=9.8
Q ss_pred CCCCCCCCCcccc
Q 044928 134 VPSMPDLPPVKTK 146 (321)
Q Consensus 134 ~pSl~NLPpir~~ 146 (321)
.||+.|-+|-+.+
T Consensus 5 ~p~~~e~~Pw~at 17 (45)
T 2jxc_B 5 SPSVTEASPWRAT 17 (45)
T ss_dssp -CCCSCCCCSCSS
T ss_pred CCccccCCCcccC
Confidence 3788888888776
No 3
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=8.07 E-value=57 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=14.4
Q ss_pred CCCccCCCccCCCCCCccccc
Q 044928 220 PIRAQYVPQYQVPPGGQIPVG 240 (321)
Q Consensus 220 ~~~~qy~~Qy~~~~~g~vPig 240 (321)
.+-+||.|+|. -+|.||-
T Consensus 31 aGFPQYAqlye---d~qFPId 48 (81)
T 2h80_A 31 AGFPQYAQLYE---DSQFPIN 48 (81)
T ss_dssp TTCHHHHHTTT---TTCCCSC
T ss_pred cCCcHHHHHhh---ccccccc
Confidence 34589999998 7888884
No 4
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=6.16 E-value=1.9e+02 Score=22.22 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=12.0
Q ss_pred cCCccceEEeeecCCCcc
Q 044928 275 ADGVNQQVYYGVRNAGLV 292 (321)
Q Consensus 275 ~dg~~q~~y~~v~~~g~v 292 (321)
.||. +||||+++|++
T Consensus 17 ~dg~---f~~~v~tt~iy 31 (133)
T 1u8b_A 17 ADGE---FVFAVRTTGIF 31 (133)
T ss_dssp GBTT---BEEEETTTTEE
T ss_pred cCCe---EEEEeCcccEe
Confidence 4564 89999999974
No 5
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.70 E-value=2.9e+02 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=11.0
Q ss_pred cccchhhhhcCCC
Q 044928 47 REHWFFDAINNGA 59 (321)
Q Consensus 47 seqWFVDALNsv~ 59 (321)
+++||+|.|+...
T Consensus 85 ~~~Wl~d~~~~~~ 97 (129)
T 2d8m_A 85 RKEWVLDCHRMRR 97 (129)
T ss_dssp ETHHHHHHHHTTS
T ss_pred cHHHHHHHHHhCC
Confidence 6889999998765
No 6
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=5.55 E-value=78 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.2
Q ss_pred CCccCCCccCCCCCCccccc
Q 044928 221 IRAQYVPQYQVPPGGQIPVG 240 (321)
Q Consensus 221 ~~~qy~~Qy~~~~~g~vPig 240 (321)
+-+||.|+|. -+|.||-
T Consensus 34 GFPQYAqlye---d~~FPId 50 (91)
T 2dky_A 34 GFPQYAQLYE---DFLFPID 50 (91)
T ss_dssp TCTTHHHHHH---TTCCSCC
T ss_pred CChHHHHhcc---ccccccc
Confidence 4588999987 7788874
No 7
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila melanogaster}
Probab=5.03 E-value=1.4e+02 Score=25.07 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCCccCCCCCCcccccccCCCCCCcccc-ccee
Q 044928 225 YVPQYQVPPGGQIPVGYHQPVPGPGQVY-GGAV 256 (321)
Q Consensus 225 y~~Qy~~~~~g~vPigyh~~~~g~gqvy-g~~~ 256 (321)
-+|.||----|.-=||||-.|-+-|.|| |-+.
T Consensus 56 ~iq~~H~~~~Gw~DIGYnFlI~~dG~VyeGRg~ 88 (150)
T 2xz8_A 56 LLQNWHIESNGYKDINYNFVAAGDENIYEARGW 88 (150)
T ss_dssp HHHHHHHHTTCCSSCSCSEEECTTSCEEESSCS
T ss_pred HHHHHHHHhCCCCCCCCcEEEcCCCeEEECCCC
Confidence 5667774346778899999999999999 5443
No 8
>3oru_A DUF1989 family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, metal binding PR; HET: MSE; 1.11A {Ruegeria SP} PDB: 3siy_A*
Probab=4.49 E-value=3.1e+02 Score=24.87 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=26.7
Q ss_pred eecCCCCCCceeEEecCCccceEEeeecCCCccCCccccccCCcc
Q 044928 260 VTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPGGE 304 (321)
Q Consensus 260 ~~~~~~~~~~~~vv~~dg~~q~~y~~v~~~g~v~~~~~m~~~g~~ 304 (321)
+..+.+|+.. +.+|.|+..|--++.+|-..-=.-..||+|+
T Consensus 3 ~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~Ip~g~ 43 (234)
T 3oru_A 3 TSFDRPFEAA----RPDGENPSAHETLAEGGRLRPEATYTIPARQ 43 (234)
T ss_dssp CCTTSCCCTT----CCSSCCGGGTCCSSGGGCCCTTCCEEECTTC
T ss_pred ccccCCCCCC----CcCcCChhhhhhhccCCceeeeeeEEECCCC
Confidence 3456667744 5899999999999998743221223455554
No 9
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=4.08 E-value=1.2e+02 Score=26.71 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=43.0
Q ss_pred hhhhhhhhcc--CCCCCceeEEEeecCCCC--CcccccccccccccCCCcccchhhhhcCCCCCCCCCCCCCCCCCCCCC
Q 044928 2 IEEYDRLAQN--QNTRSARLRLFLFTKGED--SVSRASSISSLLDASTNREHWFFDAINNGAAPGSGLERGRSEASSIFS 77 (321)
Q Consensus 2 MeEYDRL~~~--ss~kpaRLRLFLFP~kp~--d~s~~~s~gSlLd~s~kseqWFVDALNsv~~p~~~ieRg~S~aSs~~s 77 (321)
+||.++.... .+.-.+..|-|=|+.... ..+.... +++ ...+++..+||+.- +-.||...+. ..
T Consensus 13 ~~~~~~V~tDYD~~adFs~YkTya~~~~~~~~~~~~~~~---~~~--dl~~kRI~~aV~~~-----L~akG~~~v~--~~ 80 (197)
T 4f54_A 13 LDDNYLVYTNYDXQANFXDFSTFYLADXILVISDSXEPE---YLE--GEGAEQILAAYTEN-----MEAXGYQPAA--DX 80 (197)
T ss_dssp -CCSSEEEEEECTTCCGGGCCEEEECSSCEEECSSSSCE---ECC--SHHHHHHHHHHHHH-----HHHTTCEECS--ST
T ss_pred cccCceEEccCCCccCcccceeeeecccccccccccccc---ccC--cHHHHHHHHHHHHH-----HHhcCceecC--CC
Confidence 3444444322 234678999999976421 0000011 111 24588999999986 4667765432 24
Q ss_pred CCCCcccccC
Q 044928 78 EAPDYLFGLE 87 (321)
Q Consensus 78 ~npD~LfGLD 87 (321)
++||+|+.+.
T Consensus 81 ~~pDllV~~~ 90 (197)
T 4f54_A 81 ESADLGIQVS 90 (197)
T ss_dssp TTCSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 7999999985
No 10
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=3.91 E-value=1.5e+02 Score=20.31 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=6.6
Q ss_pred CceeEEEe
Q 044928 16 SARLRLFL 23 (321)
Q Consensus 16 paRLRLFL 23 (321)
-+|||+|+
T Consensus 28 hp~lrifv 35 (37)
T 4aor_D 28 HPILRIFV 35 (37)
T ss_dssp CSSBSSEE
T ss_pred CCeeEEEe
Confidence 47999996
Done!