Query 044928
Match_columns 321
No_of_seqs 80 out of 82
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 14:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1irxa1 a.97.1.2 (A:320-523) C 18.4 11 0.00077 29.1 -0.3 11 1-11 7-17 (204)
2 d1eyfa_ g.48.1.1 (A:) Ada DNA 12.7 26 0.0019 26.3 0.6 12 281-292 26-37 (92)
3 d1a8la1 c.47.1.2 (A:1-119) Pro 8.6 55 0.004 24.6 1.2 7 300-306 98-104 (119)
4 d1xcga2 b.55.1.1 (A:942-1081) 7.2 1.5E+02 0.011 21.0 3.1 12 15-26 39-50 (140)
5 d2auaa1 d.166.1.6 (A:2-195) Hy 6.4 56 0.0041 27.3 0.3 26 1-27 86-112 (194)
6 d1f5na1 a.114.1.1 (A:284-583) 6.2 57 0.0042 25.6 0.2 11 49-59 15-25 (300)
7 d1lkta_ b.90.1.1 (A:) Head-bin 5.9 1.9E+02 0.014 21.9 3.1 30 250-284 68-97 (104)
8 d2oq0a1 b.40.16.1 (A:115-202) 5.3 1.7E+02 0.013 21.5 2.5 14 15-28 57-70 (88)
9 d1hyua3 c.47.1.2 (A:1-102) Alk 4.8 1.2E+02 0.0089 22.0 1.3 26 269-307 63-88 (102)
10 d1pd0a2 b.2.8.1 (A:133-215,A:5 4.4 1.1E+02 0.0077 24.7 0.7 35 253-287 72-106 (177)
No 1
>d1irxa1 a.97.1.2 (A:320-523) C-terminal domain of class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.42 E-value=11 Score=29.14 Aligned_cols=11 Identities=9% Similarity=0.588 Sum_probs=9.4
Q ss_pred Chhhhhhhhcc
Q 044928 1 MIEEYDRLAQN 11 (321)
Q Consensus 1 MMeEYDRL~~~ 11 (321)
|+|||||+++.
T Consensus 7 ~~dey~r~~~~ 17 (204)
T d1irxa1 7 LYDEFEKVERI 17 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999999865
No 2
>d1eyfa_ g.48.1.1 (A:) Ada DNA repair protein, N-terminal domain (N-Ada 10) {Escherichia coli [TaxId: 562]}
Probab=12.74 E-value=26 Score=26.29 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=10.6
Q ss_pred eEEeeecCCCcc
Q 044928 281 QVYYGVRNAGLV 292 (321)
Q Consensus 281 ~~y~~v~~~g~v 292 (321)
.+||||++||++
T Consensus 26 ~F~~gv~tT~iy 37 (92)
T d1eyfa_ 26 EFVFAVRTTGIF 37 (92)
T ss_dssp TCEEEETTTTEE
T ss_pred cEEEEECcCCee
Confidence 599999999975
No 3
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.60 E-value=55 Score=24.56 Aligned_cols=7 Identities=43% Similarity=1.118 Sum_probs=3.5
Q ss_pred cCCcccc
Q 044928 300 IPGGEEL 306 (321)
Q Consensus 300 ~~g~~e~ 306 (321)
+|+|.|+
T Consensus 98 iP~GhEf 104 (119)
T d1a8la1 98 LPAGHEF 104 (119)
T ss_dssp CCCTTHH
T ss_pred ccCchhH
Confidence 3455554
No 4
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.17 E-value=1.5e+02 Score=21.02 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=8.4
Q ss_pred CCceeEEEeecC
Q 044928 15 RSARLRLFLFTK 26 (321)
Q Consensus 15 kpaRLRLFLFP~ 26 (321)
+...+.+|||.-
T Consensus 39 k~k~r~~FLF~D 50 (140)
T d1xcga2 39 KTLDLHVLLLED 50 (140)
T ss_dssp CCCEEEEEEESS
T ss_pred CceEEEEEEecC
Confidence 444688999963
No 5
>d2auaa1 d.166.1.6 (A:2-195) Hypothetical protein BC2332 {Bacillus cereus [TaxId: 1396]}
Probab=6.45 E-value=56 Score=27.33 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=19.6
Q ss_pred ChhhhhhhhccCCCCCceeE-EEeecCC
Q 044928 1 MIEEYDRLAQNQNTRSARLR-LFLFTKG 27 (321)
Q Consensus 1 MMeEYDRL~~~ss~kpaRLR-LFLFP~k 27 (321)
++-|+-|+... +..|+||+ ||+|...
T Consensus 86 ~I~E~VR~~~f-P~~PSRl~siFa~~tl 112 (194)
T d2auaa1 86 TIVEMVRLQEF-PEYPSRLSCLYAAKSY 112 (194)
T ss_dssp HHHHHHHHHHC-TTSCCTTSCEEEBSSH
T ss_pred HHHHHHHHhhC-CCCCcceeeEEeeCCH
Confidence 35688888776 77999997 6777643
No 6
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.19 E-value=57 Score=25.56 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=8.9
Q ss_pred cchhhhhcCCC
Q 044928 49 HWFFDAINNGA 59 (321)
Q Consensus 49 qWFVDALNsv~ 59 (321)
+-||||||+..
T Consensus 15 ~~yv~ain~g~ 25 (300)
T d1f5na1 15 LTYVNAISSGD 25 (300)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHcCCC
Confidence 34999999875
No 7
>d1lkta_ b.90.1.1 (A:) Head-binding domain of phage P22 tailspike protein {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=5.86 E-value=1.9e+02 Score=21.87 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=17.3
Q ss_pred ccccceeeeeeecCCCCCCceeEEecCCccceEEe
Q 044928 250 QVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYY 284 (321)
Q Consensus 250 qvyg~~~r~v~~~~~~~~~~~~vv~~dg~~q~~y~ 284 (321)
-||-|.+-...+.+. ++ |+|. |.-.+|+||
T Consensus 68 ~vyngq~ak~vt~~~-hS--MAvy--D~~g~q~Fy 97 (104)
T d1lkta_ 68 IVYNGQLVKIVTVQG-HS--MAIY--DANGSQVDY 97 (104)
T ss_dssp EEETTEECCEEESSC-CE--EEEE--CTTSCEEEE
T ss_pred eeEeceeeeEEeccC-ce--EEEE--cCCCcEEEe
Confidence 366555555555555 66 7777 555555544
No 8
>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.30 E-value=1.7e+02 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=11.2
Q ss_pred CCceeEEEeecCCC
Q 044928 15 RSARLRLFLFTKGE 28 (321)
Q Consensus 15 kpaRLRLFLFP~kp 28 (321)
.-.|||||-|-.+.
T Consensus 57 eGDKLrL~cFeL~~ 70 (88)
T d2oq0a1 57 EGDKLQLFCFRLRK 70 (88)
T ss_dssp TTCEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEEe
Confidence 45799999997664
No 9
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.77 E-value=1.2e+02 Score=22.05 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=14.4
Q ss_pred ceeEEecCCccceEEeeecCCCccCCccccccCCccccc
Q 044928 269 PVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPGGEELR 307 (321)
Q Consensus 269 ~~~vv~~dg~~q~~y~~v~~~g~v~~~~~m~~~g~~e~~ 307 (321)
|+-.+..||. ++|+|..| ||||.|+.
T Consensus 63 Ps~~i~~~g~----~~gI~F~G---------iP~GhEF~ 88 (102)
T d1hyua3 63 PSFLITNPGS----QQGPRFAG---------SPLGHEFT 88 (102)
T ss_dssp SEEEEECTTC----CCSCEEES---------CCCGGGHH
T ss_pred CeEEEecCCC----EeeeEEec---------CCCcccHH
Confidence 5444445553 35666554 46777763
No 10
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.39 E-value=1.1e+02 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=29.7
Q ss_pred cceeeeeeecCCCCCCceeEEecCCccceEEeeec
Q 044928 253 GGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVR 287 (321)
Q Consensus 253 g~~~r~v~~~~~~~~~~~~vv~~dg~~q~~y~~v~ 287 (321)
|.-++|...+...++--|||=.++|+.-.-|||=-
T Consensus 72 ~~~i~Pf~~l~~a~~~vmRvR~S~Gl~v~~~yGnf 106 (177)
T d1pd0a2 72 GLVIRPYQHLYDCMETVMRARGSTGLRMSRFYGHF 106 (177)
T ss_dssp EEEECSCCSSSTEEEEEEEEEECTTEEEEEEESSS
T ss_pred EEEeccccchhhhhheeEEEecCCCeEEEEEEcce
Confidence 56688888888888877799999999999999843
Done!