BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044931
(889 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 599 LSDDVIGKLLNLRYLGLRSTFIDSLPKSV-GILPRLETLDVKHTKLRFLPDSIW-KAKKL 656
L D V KL NL YL L + SLPK V L L LD+ + +L+ LP+ ++ K +L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 657 Q--HLYLNWIHSPIDG 670
+ LY N + S DG
Sbjct: 184 KDLRLYQNQLKSVPDG 199
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 586 LTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSV-GILPRLETLDVKHTKLR 644
LT L L G L + V KL NL+ L L + SLP V L L L++ H +L+
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 645 FLPDSIW-KAKKLQHLYLNW 663
LP ++ K L L L++
Sbjct: 147 SLPKGVFDKLTNLTELDLSY 166
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 560 GSPAIEIYVFLDKMITAKSKRGGF---VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLR 616
G PA Y+ L+ G F LT L L G L + V KL +L YL L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 617 STFIDSLPKSV-GILPRLETLDVKHTKLRFLPDSIW-KAKKLQ--HLYLNWIHSPIDG 670
+ + SLP V L +L+ L + +L+ LPD ++ K +L+ LY N + S DG
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 576 AKSKRGGFVLLTVLDLE--GVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRL 633
A + G V L L LE G+ L S I L NL+ L +R++ + +L ++ LP+L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPAS---IANLQNLKSLKIRNSPLSALGPAIHHLPKL 231
Query: 634 ETLDVKH-TKLRFLPDSIWKAKKLQHLYL----NWIHSPID 669
E LD++ T LR P L+ L L N + P+D
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 600 SDDVIGK---LLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKL 656
S D G+ L+NL+ L L T I SLP S+ L L++L ++++ L L +I KL
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231
Query: 657 QHLYL 661
+ L L
Sbjct: 232 EELDL 236
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 21/158 (13%)
Query: 741 RVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYR 800
R+T L+ LYL + GI NL+ L ++ ++L P+ + ++L +L LRL R
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 801 G----------------AYLG----EETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMP 840
YL E + G F +L LK L++ + V +GA
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 841 RLRELE-IRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877
+L EL+ ++ NN P+G + LK L P
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 610 LRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHS 666
++ L L S I S+PK V L L+ L+V +L+ +PD I+ +L L W+H+
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF--DRLTSLQKIWLHT 477
>pdb|3IZR|LL Chain l, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 94
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 792 HLNILRLYRGAYLGEETTCSSGGFPQLRVLKL-WNLFSLEEWTVEKGAMPRLRELEIRSC 850
H +R R ++ +++TCSS G+P R+ K W++ ++ T G M +R + R
Sbjct: 16 HTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFK 75
Query: 851 NNLK 854
+N +
Sbjct: 76 SNFR 79
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 346 GLFNNSELVTFKER---ILKKCGGLPIRIVLLGGLLSATKGRNF-QKWSSVIERAD---- 397
LF N + E+ I+K+C G P+ + L+G LL R+F +W +++
Sbjct: 296 SLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL-----RDFPNRWEYYLKQLQNKQF 350
Query: 398 --VDKSDGW----VSGLLALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFV 451
+ KS + + +++S + L +K ++ + + ++P + L LW
Sbjct: 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW------ 404
Query: 452 APIDTDLAETYFEELVIRNLI 472
++T+ E +E V ++L+
Sbjct: 405 -DMETEEVEDILQEFVNKSLL 424
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 360 ILKKCGGLPIRIVLLGGLLSATKGRNF-QKWSSVIERAD------VDKSDGW----VSGL 408
I+K+C G P+ + L+G LL R+F +W+ + + + KS + +
Sbjct: 320 IIKECKGSPLVVSLIGALL-----RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 374
Query: 409 LALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFEELVI 468
+++S + L +K ++ + + ++P + L LW ++T+ E +E V
Sbjct: 375 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW-------DLETEEVEDILQEFVN 427
Query: 469 RNLIHVTK 476
++L+ +
Sbjct: 428 KSLLFCNR 435
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 360 ILKKCGGLPIRIVLLGGLLSATKGRNF-QKWSSVIERAD------VDKSDGW----VSGL 408
I+K+C G P+ + L+G LL R+F +W+ + + + KS + +
Sbjct: 313 IIKECKGSPLVVSLIGALL-----RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367
Query: 409 LALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFEELVI 468
+++S + L +K ++ + + ++P + L LW ++T+ E +E V
Sbjct: 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW-------DLETEEVEDILQEFVN 420
Query: 469 RNLIHVTK 476
++L+ +
Sbjct: 421 KSLLFCNR 428
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 347 LFNNSELVTFKER---ILKKCGGLPIRIVLLGGLLSATKGRNF-QKWSSVIERAD----- 397
LF N + E+ I+K+C G P+ + L+G LL R+F +W +++
Sbjct: 303 LFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL-----RDFPNRWEYYLKQLQNKQFK 357
Query: 398 -VDKSDGW----VSGLLALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVA 452
+ KS + + +++S + L +K ++ + + ++P + L LW
Sbjct: 358 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW------- 410
Query: 453 PIDTDLAETYFEELVIRNLI 472
++T+ E +E V ++L+
Sbjct: 411 DMETEEVEDILQEFVNKSLL 430
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 151 FWEHHMARPWQRISSYCFEQEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKT 210
F++H RP + S FEQE L+ L+E + +S L R +VI + GE GSGKT
Sbjct: 137 FFKH--VRPMSK-SLTPFEQE--LLALKEA-GDYMSFL-RRAVQLERVIVVAGETGSGKT 189
Query: 211 TLTRSVYDRV 220
TL +++ +
Sbjct: 190 TLMKALMQEI 199
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 571 DKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGIL 630
++M+ K + L LDL + +S ++ K L L L + LP + L
Sbjct: 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNL 269
Query: 631 PRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661
L LD+ H +L LP + +L++ Y
Sbjct: 270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 174 LVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV 220
++G +E+I ++ +L+R +N ++GE G GKT + + R+
Sbjct: 172 VIGRDEEIRRVIQILLRRTKNNP---VLIGEPGVGKTAIVEGLAQRI 215
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 196 SQVIAIVGEAGSGKTTLTR 214
+VI IVG AGSGK+TLT+
Sbjct: 31 GEVIGIVGRAGSGKSTLTK 49
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 174 LVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV 220
++G +E+I ++ +L+R +N ++GE G GKT + + R+
Sbjct: 35 VIGRDEEIRRVIQILLRRTKNNP---VLIGEPGVGKTAIVEGLAQRI 78
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 592 EGVYKLKLSDDVI-GKLL-----NLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRF 645
E + L LS +++ G + ++ L L + I S+PK V L L+ L+V +L+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Query: 646 LPDSIWKAKKLQHLYLNWIH 665
+PD ++ +L L W+H
Sbjct: 488 VPDGVF--DRLTSLQYIWLH 505
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 197 QVIAIVGEAGSGKTTLTRSVYDRVDVK 223
+ +A+VG AGSGKTTLT ++ + K
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAK 36
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 607 LLNLRYLGLRSTFIDSLPKSV-GILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIH 665
L NL + S + +P+ + G +P+L+ L++ +L+ +PD I+ +L L W+H
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIF--DRLTSLQKIWLH 226
Query: 666 S 666
+
Sbjct: 227 T 227
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSV-GILPRLETLDVKH 640
G LT L+L+ LS V L L LGL + + SLP V L +L+ L +
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 641 TKLRFLPDSIW-KAKKLQHLYLN 662
+L+ LP ++ + KL+ L LN
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLN 139
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSV-GILPRLETLDVKH 640
G LT L+L+ LS V L L LGL + + SLP V L +L+ L +
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 641 TKLRFLPDSIW-KAKKLQHLYLN 662
+L+ LP ++ + KL+ L LN
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLN 139
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 180 QINNLVSLLIREHNHNSQVIAIVGE--AGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237
INN + I ++ + + A +G GK SVYDR+D ++ + E
Sbjct: 22 DINNKANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEXDRSHIASYAPIEGE 81
Query: 238 AKVRDVLIDIL 248
R ++ID L
Sbjct: 82 KDYRKIVIDTL 92
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 586 LTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRF 645
LTVLDL L V +L++L+ L + + LP+ + L L L + +L+
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
Query: 646 LPDSIW-KAKKLQHLYL 661
+P + + L H YL
Sbjct: 150 IPHGAFDRLSSLTHAYL 166
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 745 LQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRL 798
LQELYL+G+ G+ P L+ L+L+ ++L P LL L +L+ L L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,115,741
Number of Sequences: 62578
Number of extensions: 1011007
Number of successful extensions: 2705
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2657
Number of HSP's gapped (non-prelim): 65
length of query: 889
length of database: 14,973,337
effective HSP length: 107
effective length of query: 782
effective length of database: 8,277,491
effective search space: 6472997962
effective search space used: 6472997962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)