Query 044931
Match_columns 889
No_of_seqs 539 out of 4374
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-84 4.6E-89 763.0 35.2 788 3-860 1-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.8E-60 3.9E-65 593.1 41.8 655 167-878 179-905 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.3E-40 9.4E-45 352.6 16.3 263 177-452 1-283 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.2E-25 6.9E-30 277.8 16.9 290 582-877 138-439 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.7E-25 1E-29 276.3 16.3 334 522-877 118-463 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.6E-27 7.9E-32 250.4 -3.7 318 538-879 47-375 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 5.4E-25 1.2E-29 234.0 -2.0 314 521-854 54-376 (1255)
8 KOG4194 Membrane glycoprotein 99.9 3.7E-23 8.1E-28 219.2 3.0 287 582-874 147-447 (873)
9 KOG4194 Membrane glycoprotein 99.9 2.4E-22 5.1E-27 213.1 4.5 337 520-877 76-427 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 1.4E-22 3.1E-27 205.9 -9.7 313 539-879 153-541 (565)
11 PLN03210 Resistant to P. syrin 99.8 3.2E-18 7E-23 214.6 16.1 300 521-854 588-907 (1153)
12 KOG0472 Leucine-rich repeat pr 99.7 1.3E-19 2.9E-24 184.5 -8.4 266 544-878 43-309 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.8E-19 3.9E-24 201.8 -9.4 177 696-877 258-487 (1081)
14 KOG0618 Serine/threonine phosp 99.7 2E-18 4.4E-23 193.5 -1.8 215 632-854 242-490 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 3.7E-15 8.1E-20 173.4 13.1 252 586-878 203-457 (788)
16 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.3E-21 143.9 -3.6 158 539-714 26-185 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 3.9E-14 8.4E-19 165.0 12.2 244 546-863 222-467 (788)
18 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 162.4 12.5 119 744-879 305-428 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.5 9.3E-14 2E-18 165.5 9.1 301 540-859 517-847 (889)
20 KOG0617 Ras suppressor protein 99.4 3.3E-14 7.2E-19 128.9 -1.6 156 573-735 25-183 (264)
21 PRK15370 E3 ubiquitin-protein 99.4 1.1E-12 2.3E-17 154.2 9.6 225 546-827 199-426 (754)
22 KOG4237 Extracellular matrix p 99.3 3.8E-13 8.3E-18 137.8 -2.1 122 547-682 68-193 (498)
23 KOG4237 Extracellular matrix p 99.2 3.8E-13 8.2E-18 137.9 -2.9 262 585-849 68-355 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 3.8E-12 8.2E-17 138.8 0.5 260 582-877 21-318 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 1.9E-11 4.1E-16 133.3 0.8 264 542-849 19-316 (319)
26 PRK04841 transcriptional regul 99.1 1.5E-08 3.3E-13 126.8 25.6 283 172-501 14-333 (903)
27 PRK00411 cdc6 cell division co 99.0 1.8E-07 3.8E-12 105.1 26.7 304 170-490 28-375 (394)
28 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 104.8 3.0 130 542-688 15-151 (175)
29 PRK00080 ruvB Holliday junctio 98.8 3E-08 6.4E-13 107.7 13.1 271 171-476 24-311 (328)
30 PF14580 LRR_9: Leucine-rich r 98.8 8.9E-09 1.9E-13 98.8 6.4 126 582-733 17-148 (175)
31 COG4886 Leucine-rich repeat (L 98.8 8.7E-09 1.9E-13 115.7 7.0 100 582-682 114-214 (394)
32 KOG1259 Nischarin, modulator o 98.8 2.3E-09 4.9E-14 106.4 1.7 201 622-827 205-410 (490)
33 TIGR00635 ruvB Holliday juncti 98.8 1.2E-07 2.6E-12 102.3 15.2 267 172-476 4-290 (305)
34 KOG0532 Leucine-rich repeat (L 98.8 4.4E-10 9.6E-15 120.9 -4.0 152 582-738 96-247 (722)
35 KOG3207 Beta-tubulin folding c 98.7 6.1E-09 1.3E-13 109.0 4.0 203 605-854 118-339 (505)
36 TIGR02928 orc1/cdc6 family rep 98.7 2.8E-06 6.1E-11 94.3 25.4 291 172-476 15-351 (365)
37 TIGR03015 pepcterm_ATPase puta 98.6 4.1E-06 8.9E-11 88.7 20.6 171 195-378 42-242 (269)
38 PF01637 Arch_ATPase: Archaeal 98.6 3.3E-07 7.1E-12 94.8 11.6 184 174-373 1-233 (234)
39 KOG0532 Leucine-rich repeat (L 98.6 4E-09 8.7E-14 113.7 -3.4 176 539-734 91-269 (722)
40 KOG3207 Beta-tubulin folding c 98.5 2.5E-08 5.5E-13 104.5 1.8 200 650-876 117-336 (505)
41 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.3E-12 107.0 6.7 95 587-682 96-191 (394)
42 PF13855 LRR_8: Leucine rich r 98.5 7.5E-08 1.6E-12 75.8 3.4 60 584-643 1-61 (61)
43 KOG2120 SCF ubiquitin ligase, 98.5 1.7E-08 3.6E-13 100.5 -0.9 130 698-827 230-374 (419)
44 KOG1909 Ran GTPase-activating 98.4 2E-08 4.4E-13 102.5 -2.3 245 582-853 28-310 (382)
45 COG2909 MalT ATP-dependent tra 98.4 7.2E-06 1.6E-10 93.8 17.4 285 171-502 18-340 (894)
46 KOG4341 F-box protein containi 98.4 1.9E-08 4.1E-13 104.9 -2.8 82 584-665 138-227 (483)
47 KOG1259 Nischarin, modulator o 98.3 7.4E-08 1.6E-12 95.8 -0.7 76 586-663 286-361 (490)
48 PF05729 NACHT: NACHT domain 98.3 2.5E-06 5.4E-11 82.9 10.0 135 197-336 1-163 (166)
49 PRK05564 DNA polymerase III su 98.3 6E-06 1.3E-10 89.1 13.3 182 172-374 4-190 (313)
50 KOG2982 Uncharacterized conser 98.2 5.4E-07 1.2E-11 89.9 3.0 82 582-664 69-156 (418)
51 COG3899 Predicted ATPase [Gene 98.2 2.1E-05 4.5E-10 95.2 15.5 304 173-498 1-384 (849)
52 PLN03150 hypothetical protein; 98.2 3E-06 6.5E-11 99.8 7.4 82 767-849 442-524 (623)
53 PRK07003 DNA polymerase III su 98.1 3.3E-05 7E-10 88.9 15.0 187 172-375 16-222 (830)
54 PLN03150 hypothetical protein; 98.1 3.6E-06 7.9E-11 99.1 7.7 91 585-675 419-512 (623)
55 PRK06893 DNA replication initi 98.1 3.6E-05 7.9E-10 78.8 13.7 151 196-374 39-203 (229)
56 PF13855 LRR_8: Leucine rich r 98.1 1.4E-06 3.1E-11 68.5 2.4 61 546-620 1-61 (61)
57 KOG3665 ZYG-1-like serine/thre 98.1 1.6E-06 3.4E-11 101.7 3.7 157 546-733 122-283 (699)
58 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6.1E-11 61.1 3.6 40 608-647 1-40 (44)
59 COG3903 Predicted ATPase [Gene 98.1 1E-05 2.2E-10 85.8 8.9 281 195-501 13-315 (414)
60 KOG2120 SCF ubiquitin ligase, 98.1 3E-07 6.6E-12 91.7 -2.5 153 698-851 206-374 (419)
61 PTZ00202 tuzin; Provisional 98.1 1.6E-05 3.5E-10 85.0 9.6 81 166-254 256-336 (550)
62 PRK14961 DNA polymerase III su 98.1 3.6E-05 7.9E-10 84.6 12.8 183 172-371 16-217 (363)
63 TIGR02903 spore_lon_C ATP-depe 98.0 8.2E-05 1.8E-09 87.1 15.6 191 172-377 154-398 (615)
64 PRK12402 replication factor C 98.0 0.0001 2.2E-09 80.9 15.7 179 172-373 15-225 (337)
65 PRK14949 DNA polymerase III su 98.0 5.1E-05 1.1E-09 89.1 13.4 184 172-372 16-218 (944)
66 PF13191 AAA_16: AAA ATPase do 98.0 7.7E-06 1.7E-10 81.1 5.7 51 173-225 1-51 (185)
67 PRK14960 DNA polymerase III su 98.0 4.8E-05 1E-09 86.6 12.4 178 172-372 15-217 (702)
68 PF05496 RuvB_N: Holliday junc 98.0 2.6E-05 5.7E-10 76.6 8.6 178 172-375 24-222 (233)
69 KOG0531 Protein phosphatase 1, 98.0 2.8E-06 6E-11 95.7 1.8 109 543-669 69-177 (414)
70 PRK13342 recombination factor 97.9 4.3E-05 9.2E-10 85.7 11.1 180 172-375 12-197 (413)
71 KOG4579 Leucine-rich repeat (L 97.9 4.7E-06 1E-10 73.9 2.4 107 582-689 51-157 (177)
72 KOG1909 Ran GTPase-activating 97.9 5.6E-07 1.2E-11 92.1 -4.2 249 542-828 26-310 (382)
73 PRK12323 DNA polymerase III su 97.9 5.7E-05 1.2E-09 85.8 11.1 186 172-374 16-225 (700)
74 PRK00440 rfc replication facto 97.9 0.00011 2.3E-09 80.1 12.5 181 172-371 17-200 (319)
75 KOG4341 F-box protein containi 97.9 7.5E-07 1.6E-11 93.2 -4.3 278 608-886 138-446 (483)
76 COG2256 MGS1 ATPase related to 97.9 8.9E-05 1.9E-09 78.2 10.8 143 171-336 29-176 (436)
77 PRK14963 DNA polymerase III su 97.9 0.00012 2.6E-09 83.2 12.9 177 172-371 14-214 (504)
78 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 57.9 2.9 40 584-624 1-40 (44)
79 PRK14957 DNA polymerase III su 97.8 0.00012 2.5E-09 83.4 12.1 180 172-375 16-222 (546)
80 PRK08084 DNA replication initi 97.8 0.00033 7.1E-09 72.0 14.1 174 171-373 22-208 (235)
81 KOG0531 Protein phosphatase 1, 97.8 6E-06 1.3E-10 92.9 1.4 107 542-666 91-198 (414)
82 PRK07994 DNA polymerase III su 97.8 0.00019 4.2E-09 83.0 13.1 185 172-373 16-219 (647)
83 PRK15386 type III secretion pr 97.8 8.9E-05 1.9E-09 80.2 9.6 53 607-664 51-104 (426)
84 PRK14962 DNA polymerase III su 97.8 0.00019 4E-09 81.0 12.5 190 172-378 14-223 (472)
85 PLN03025 replication factor C 97.8 0.00015 3.2E-09 78.5 11.2 176 172-369 13-195 (319)
86 PRK14956 DNA polymerase III su 97.8 0.00016 3.5E-09 80.1 11.3 179 172-369 18-217 (484)
87 TIGR03420 DnaA_homol_Hda DnaA 97.8 0.00026 5.6E-09 72.7 12.3 172 177-375 22-202 (226)
88 PF00308 Bac_DnaA: Bacterial d 97.8 0.00065 1.4E-08 68.8 14.8 170 172-371 9-205 (219)
89 cd01128 rho_factor Transcripti 97.7 5.5E-05 1.2E-09 77.6 6.5 54 195-249 15-70 (249)
90 PRK14964 DNA polymerase III su 97.7 0.00025 5.3E-09 79.6 12.1 182 172-370 13-213 (491)
91 PRK05896 DNA polymerase III su 97.7 0.00025 5.5E-09 80.8 12.1 182 172-376 16-223 (605)
92 PRK14951 DNA polymerase III su 97.7 0.00026 5.7E-09 81.8 12.4 178 172-372 16-223 (618)
93 PRK09376 rho transcription ter 97.7 3.6E-05 7.9E-10 82.2 4.9 63 183-248 158-222 (416)
94 KOG2982 Uncharacterized conser 97.7 1.1E-05 2.3E-10 80.9 0.5 226 582-846 43-285 (418)
95 PRK08691 DNA polymerase III su 97.7 0.00024 5.1E-09 81.9 11.2 177 172-371 16-217 (709)
96 PRK07471 DNA polymerase III su 97.7 0.00063 1.4E-08 74.2 14.1 178 171-375 18-239 (365)
97 PRK07940 DNA polymerase III su 97.6 0.00062 1.3E-08 74.9 13.6 184 172-375 5-214 (394)
98 KOG4579 Leucine-rich repeat (L 97.6 6.2E-06 1.3E-10 73.1 -1.6 101 582-682 25-128 (177)
99 PRK04195 replication factor C 97.6 0.0013 2.9E-08 75.3 16.8 243 172-452 14-270 (482)
100 PRK14958 DNA polymerase III su 97.6 0.00032 6.9E-09 80.0 11.5 177 172-371 16-217 (509)
101 PRK06645 DNA polymerase III su 97.6 0.00048 1E-08 78.0 12.7 175 172-370 21-225 (507)
102 PRK09112 DNA polymerase III su 97.6 0.0015 3.3E-08 70.9 15.8 185 170-375 21-241 (351)
103 PF13173 AAA_14: AAA domain 97.6 0.00017 3.6E-09 66.5 7.3 120 196-328 2-127 (128)
104 KOG1859 Leucine-rich repeat pr 97.6 5.7E-06 1.2E-10 92.2 -2.9 184 624-828 102-291 (1096)
105 TIGR02397 dnaX_nterm DNA polym 97.6 0.00056 1.2E-08 75.6 12.8 180 172-375 14-219 (355)
106 KOG2028 ATPase related to the 97.6 0.00061 1.3E-08 70.5 11.5 123 195-334 161-292 (554)
107 PTZ00112 origin recognition co 97.6 0.0018 4E-08 75.4 16.4 285 172-475 755-1086(1164)
108 PRK08727 hypothetical protein; 97.6 0.00073 1.6E-08 69.3 12.2 152 196-371 41-201 (233)
109 PRK09087 hypothetical protein; 97.6 0.0015 3.2E-08 66.6 14.0 140 196-373 44-194 (226)
110 PRK14955 DNA polymerase III su 97.6 0.00034 7.4E-09 77.9 10.2 181 172-371 16-225 (397)
111 PRK07764 DNA polymerase III su 97.5 0.00074 1.6E-08 81.0 13.2 180 172-369 15-216 (824)
112 PRK09111 DNA polymerase III su 97.5 0.00077 1.7E-08 78.1 12.6 185 171-373 23-232 (598)
113 TIGR00678 holB DNA polymerase 97.5 0.00096 2.1E-08 66.2 11.8 164 183-370 3-187 (188)
114 PRK13341 recombination factor 97.4 0.00053 1.2E-08 81.1 10.5 50 172-226 28-80 (725)
115 PRK14950 DNA polymerase III su 97.4 0.0012 2.5E-08 77.4 13.0 179 172-373 16-220 (585)
116 PRK14970 DNA polymerase III su 97.4 0.0015 3.2E-08 72.4 13.3 174 172-369 17-204 (367)
117 KOG3665 ZYG-1-like serine/thre 97.4 0.00012 2.6E-09 86.2 4.3 108 543-665 145-261 (699)
118 PRK14952 DNA polymerase III su 97.4 0.0012 2.5E-08 76.2 12.3 183 172-378 13-224 (584)
119 PRK05642 DNA replication initi 97.4 0.0036 7.9E-08 64.2 14.6 154 196-374 45-208 (234)
120 COG5238 RNA1 Ran GTPase-activa 97.4 3.7E-05 8.1E-10 76.1 -0.1 246 582-854 28-316 (388)
121 PRK08118 topology modulation p 97.4 0.00012 2.6E-09 70.7 3.1 35 197-231 2-37 (167)
122 TIGR01242 26Sp45 26S proteasom 97.4 0.0013 2.9E-08 72.6 11.7 51 169-219 119-179 (364)
123 PRK15386 type III secretion pr 97.3 0.00056 1.2E-08 74.1 8.2 83 543-652 49-136 (426)
124 PRK07133 DNA polymerase III su 97.3 0.002 4.2E-08 75.3 13.1 185 172-375 18-221 (725)
125 PRK14959 DNA polymerase III su 97.3 0.0016 3.4E-08 74.9 12.1 190 172-378 16-225 (624)
126 PRK14087 dnaA chromosomal repl 97.3 0.006 1.3E-07 68.9 16.7 183 172-378 116-323 (450)
127 PRK14969 DNA polymerase III su 97.3 0.0012 2.5E-08 76.0 11.2 180 172-374 16-221 (527)
128 PF13401 AAA_22: AAA domain; P 97.3 0.001 2.3E-08 61.5 8.9 60 195-256 3-67 (131)
129 PRK11331 5-methylcytosine-spec 97.3 0.00041 8.9E-09 76.0 6.9 69 172-245 175-243 (459)
130 PRK06305 DNA polymerase III su 97.3 0.0023 5E-08 72.1 12.9 180 172-375 17-224 (451)
131 PRK08903 DnaA regulatory inact 97.3 0.0023 5E-08 65.7 11.9 173 174-378 21-203 (227)
132 PRK14971 DNA polymerase III su 97.3 0.0014 3E-08 76.6 11.4 179 172-369 17-217 (614)
133 PRK14954 DNA polymerase III su 97.3 0.0017 3.7E-08 75.5 11.8 178 172-374 16-229 (620)
134 KOG1859 Leucine-rich repeat pr 97.3 2.9E-05 6.2E-10 86.8 -2.5 107 541-665 182-290 (1096)
135 TIGR00362 DnaA chromosomal rep 97.2 0.026 5.7E-07 63.4 20.6 172 171-370 110-306 (405)
136 cd00009 AAA The AAA+ (ATPases 97.2 0.00084 1.8E-08 63.3 7.2 59 175-238 1-59 (151)
137 PRK14953 DNA polymerase III su 97.2 0.0042 9E-08 70.6 13.1 179 172-374 16-220 (486)
138 PHA02544 44 clamp loader, smal 97.1 0.0022 4.7E-08 69.6 10.4 47 171-219 20-66 (316)
139 PRK08451 DNA polymerase III su 97.1 0.0042 9.1E-08 70.6 12.2 180 172-374 14-218 (535)
140 PRK14948 DNA polymerase III su 97.1 0.0048 1E-07 72.2 12.8 180 172-374 16-222 (620)
141 PRK06647 DNA polymerase III su 97.1 0.0049 1.1E-07 71.2 12.6 182 172-371 16-217 (563)
142 PRK00149 dnaA chromosomal repl 97.0 0.03 6.5E-07 63.7 18.8 196 172-396 123-349 (450)
143 PRK06620 hypothetical protein; 97.0 0.0046 9.9E-08 62.4 10.7 160 169-368 14-183 (214)
144 PRK14965 DNA polymerase III su 97.0 0.0038 8.2E-08 72.8 11.1 178 172-374 16-221 (576)
145 TIGR00767 rho transcription te 97.0 0.0011 2.5E-08 71.4 6.0 55 195-250 167-223 (415)
146 PRK03992 proteasome-activating 97.0 0.0052 1.1E-07 68.2 11.4 49 170-218 129-187 (389)
147 COG1474 CDC6 Cdc6-related prot 97.0 0.019 4E-07 62.7 15.3 195 172-375 17-239 (366)
148 PRK05707 DNA polymerase III su 96.9 0.013 2.9E-07 63.0 13.2 83 276-374 121-203 (328)
149 TIGR02880 cbbX_cfxQ probable R 96.9 0.011 2.4E-07 62.6 12.4 159 172-337 22-209 (284)
150 KOG2739 Leucine-rich acidic nu 96.9 0.00055 1.2E-08 68.3 2.4 106 582-689 41-155 (260)
151 COG2255 RuvB Holliday junction 96.9 0.006 1.3E-07 61.6 9.6 178 172-372 26-221 (332)
152 PRK07399 DNA polymerase III su 96.8 0.027 5.9E-07 60.3 15.1 184 172-373 4-220 (314)
153 CHL00181 cbbX CbbX; Provisiona 96.8 0.036 7.9E-07 58.6 15.7 158 171-337 22-210 (287)
154 PRK12422 chromosomal replicati 96.8 0.013 2.9E-07 65.8 12.7 123 197-337 142-285 (445)
155 PRK14086 dnaA chromosomal repl 96.7 0.061 1.3E-06 61.9 17.8 144 197-367 315-481 (617)
156 PF05621 TniB: Bacterial TniB 96.7 0.057 1.2E-06 56.2 15.8 84 171-256 33-125 (302)
157 TIGR02881 spore_V_K stage V sp 96.7 0.012 2.5E-07 61.8 11.2 47 172-218 6-64 (261)
158 PTZ00361 26 proteosome regulat 96.7 0.038 8.1E-07 61.7 15.1 53 172-226 183-245 (438)
159 PRK05563 DNA polymerase III su 96.6 0.017 3.6E-07 67.1 12.7 174 172-370 16-216 (559)
160 KOG2123 Uncharacterized conser 96.6 0.00022 4.8E-09 71.1 -2.4 58 582-641 39-98 (388)
161 PRK06696 uridine kinase; Valid 96.6 0.0029 6.3E-08 64.6 5.3 43 176-218 2-44 (223)
162 KOG2543 Origin recognition com 96.5 0.0068 1.5E-07 63.7 7.6 77 171-252 5-81 (438)
163 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0026 5.7E-08 68.0 4.7 47 173-219 52-101 (361)
164 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0094 2E-07 72.6 10.0 44 172-218 187-230 (852)
165 KOG1644 U2-associated snRNP A' 96.5 0.0026 5.7E-08 60.9 3.7 81 582-663 62-149 (233)
166 PRK07261 topology modulation p 96.5 0.0048 1E-07 59.9 5.7 35 198-232 2-37 (171)
167 COG5238 RNA1 Ran GTPase-activa 96.4 0.0012 2.6E-08 65.8 1.3 248 542-827 26-314 (388)
168 PRK14088 dnaA chromosomal repl 96.4 0.051 1.1E-06 61.3 14.5 168 171-367 105-298 (440)
169 PF13207 AAA_17: AAA domain; P 96.4 0.0021 4.6E-08 58.5 2.9 21 198-218 1-21 (121)
170 PTZ00454 26S protease regulato 96.4 0.046 1E-06 60.5 13.7 50 170-219 143-202 (398)
171 KOG2123 Uncharacterized conser 96.4 0.00027 5.9E-09 70.4 -3.2 104 582-688 17-128 (388)
172 KOG1644 U2-associated snRNP A' 96.4 0.0044 9.4E-08 59.4 4.8 83 767-849 64-149 (233)
173 TIGR02639 ClpA ATP-dependent C 96.4 0.014 3.1E-07 70.5 10.3 45 172-219 182-226 (731)
174 KOG1947 Leucine rich repeat pr 96.3 0.00053 1.2E-08 79.3 -2.5 233 604-854 184-441 (482)
175 PRK11034 clpA ATP-dependent Cl 96.3 0.02 4.3E-07 68.5 10.6 44 172-218 186-229 (758)
176 KOG2739 Leucine-rich acidic nu 96.3 0.003 6.5E-08 63.2 3.0 91 582-673 63-162 (260)
177 TIGR03689 pup_AAA proteasome A 96.2 0.049 1.1E-06 61.8 12.8 49 171-219 181-239 (512)
178 KOG0989 Replication factor C, 96.2 0.018 3.8E-07 59.0 8.2 183 171-368 35-224 (346)
179 PF10443 RNA12: RNA12 protein; 96.1 1.4 3.1E-05 48.2 22.7 175 293-488 182-380 (431)
180 PF14516 AAA_35: AAA-like doma 96.1 0.23 5E-06 53.9 17.2 193 170-382 9-247 (331)
181 PRK08058 DNA polymerase III su 96.1 0.061 1.3E-06 58.3 12.7 147 173-334 6-180 (329)
182 PRK08116 hypothetical protein; 96.1 0.049 1.1E-06 57.0 11.4 36 197-234 115-150 (268)
183 COG0593 DnaA ATPase involved i 96.1 0.094 2E-06 57.3 13.7 181 171-375 87-291 (408)
184 PRK08769 DNA polymerase III su 96.0 0.1 2.2E-06 55.8 13.5 81 277-375 129-209 (319)
185 COG1618 Predicted nucleotide k 96.0 0.0059 1.3E-07 56.4 3.5 24 196-219 5-28 (179)
186 PRK07667 uridine kinase; Provi 95.9 0.016 3.4E-07 57.6 6.3 37 181-218 3-39 (193)
187 KOG1947 Leucine rich repeat pr 95.9 0.0022 4.8E-08 74.2 0.0 238 544-832 186-443 (482)
188 PRK06090 DNA polymerase III su 95.8 0.13 2.9E-06 54.8 13.3 163 181-375 12-202 (319)
189 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9E-08 37.1 0.8 19 610-628 2-20 (22)
190 PRK15455 PrkA family serine pr 95.7 0.011 2.3E-07 66.6 4.7 45 173-218 77-125 (644)
191 CHL00095 clpC Clp protease ATP 95.7 0.01 2.2E-07 72.7 4.6 45 172-219 179-223 (821)
192 PRK13531 regulatory ATPase Rav 95.6 0.013 2.8E-07 65.2 4.8 44 171-219 19-62 (498)
193 PF02562 PhoH: PhoH-like prote 95.6 0.027 5.9E-07 55.7 6.4 54 175-233 3-56 (205)
194 PRK06871 DNA polymerase III su 95.6 0.18 3.8E-06 54.1 13.0 79 276-371 122-200 (325)
195 PRK08181 transposase; Validate 95.5 0.071 1.5E-06 55.6 9.6 36 197-234 107-142 (269)
196 PRK05541 adenylylsulfate kinas 95.5 0.015 3.3E-07 56.8 4.4 36 195-232 6-41 (176)
197 PRK07952 DNA replication prote 95.5 0.15 3.3E-06 52.3 11.7 52 180-234 84-135 (244)
198 COG1223 Predicted ATPase (AAA+ 95.4 0.13 2.9E-06 51.3 10.3 160 170-337 119-298 (368)
199 COG0466 Lon ATP-dependent Lon 95.4 0.014 3.1E-07 66.5 4.1 56 169-226 320-378 (782)
200 PRK12377 putative replication 95.4 0.11 2.3E-06 53.5 10.1 38 196-235 101-138 (248)
201 TIGR00390 hslU ATP-dependent p 95.3 0.045 9.8E-07 59.7 7.5 79 171-251 11-104 (441)
202 COG1484 DnaC DNA replication p 95.3 0.12 2.6E-06 53.5 10.4 48 197-252 106-153 (254)
203 PF00560 LRR_1: Leucine Rich R 95.3 0.0071 1.5E-07 36.1 0.7 22 632-653 1-22 (22)
204 PF13177 DNA_pol3_delta2: DNA 95.3 0.067 1.4E-06 51.4 7.8 135 176-324 1-162 (162)
205 PRK10865 protein disaggregatio 95.2 0.018 4E-07 70.4 4.8 45 172-219 178-222 (857)
206 PF13238 AAA_18: AAA domain; P 95.2 0.013 2.8E-07 53.8 2.6 21 199-219 1-21 (129)
207 TIGR02237 recomb_radB DNA repa 95.2 0.035 7.6E-07 56.0 5.9 47 195-244 11-57 (209)
208 COG1373 Predicted ATPase (AAA+ 95.2 0.32 6.8E-06 54.2 13.8 116 198-332 39-163 (398)
209 PTZ00301 uridine kinase; Provi 95.1 0.025 5.4E-07 56.7 4.6 23 196-218 3-25 (210)
210 PRK08233 hypothetical protein; 95.1 0.018 3.8E-07 56.7 3.5 24 196-219 3-26 (182)
211 PRK05480 uridine/cytidine kina 95.1 0.018 3.9E-07 58.1 3.6 25 195-219 5-29 (209)
212 PF00485 PRK: Phosphoribulokin 95.1 0.015 3.3E-07 57.9 2.9 21 198-218 1-21 (194)
213 PRK06547 hypothetical protein; 95.0 0.03 6.6E-07 54.2 4.8 25 195-219 14-38 (172)
214 cd02019 NK Nucleoside/nucleoti 95.0 0.018 3.9E-07 46.2 2.7 22 198-219 1-22 (69)
215 PRK07993 DNA polymerase III su 95.0 0.36 7.9E-06 52.2 13.4 82 276-374 123-204 (334)
216 KOG0741 AAA+-type ATPase [Post 95.0 0.43 9.3E-06 52.7 13.5 165 184-364 526-704 (744)
217 PF01583 APS_kinase: Adenylyls 95.0 0.032 6.9E-07 52.5 4.5 36 196-233 2-37 (156)
218 PRK06762 hypothetical protein; 95.0 0.02 4.3E-07 55.4 3.3 23 196-218 2-24 (166)
219 TIGR00235 udk uridine kinase. 95.0 0.02 4.4E-07 57.6 3.5 24 195-218 5-28 (207)
220 KOG4252 GTP-binding protein [S 95.0 0.082 1.8E-06 49.2 6.9 37 197-234 21-57 (246)
221 PRK05201 hslU ATP-dependent pr 94.9 0.062 1.3E-06 58.7 7.0 48 171-218 14-72 (443)
222 PRK09270 nucleoside triphospha 94.9 0.028 6E-07 57.6 4.3 24 195-218 32-55 (229)
223 smart00382 AAA ATPases associa 94.9 0.03 6.4E-07 52.1 4.2 38 197-236 3-40 (148)
224 cd01394 radB RadB. The archaea 94.9 0.074 1.6E-06 54.1 7.3 43 195-239 18-60 (218)
225 KOG2035 Replication factor C, 94.8 0.44 9.5E-06 48.4 12.0 225 173-417 14-283 (351)
226 KOG2004 Mitochondrial ATP-depe 94.8 0.046 9.9E-07 62.2 5.7 68 170-242 409-479 (906)
227 TIGR00150 HI0065_YjeE ATPase, 94.8 0.048 1E-06 49.9 4.9 41 179-220 6-46 (133)
228 COG1102 Cmk Cytidylate kinase 94.8 0.031 6.8E-07 51.7 3.7 45 198-255 2-46 (179)
229 PHA00729 NTP-binding motif con 94.7 0.038 8.3E-07 55.3 4.6 34 183-219 7-40 (226)
230 PF00448 SRP54: SRP54-type pro 94.7 0.07 1.5E-06 52.9 6.4 58 196-255 1-59 (196)
231 PF13671 AAA_33: AAA domain; P 94.7 0.024 5.2E-07 53.2 3.0 21 198-218 1-21 (143)
232 PRK10787 DNA-binding ATP-depen 94.7 0.057 1.2E-06 65.2 6.9 49 170-218 320-371 (784)
233 KOG2227 Pre-initiation complex 94.7 0.59 1.3E-05 51.1 13.6 198 169-378 147-376 (529)
234 TIGR01241 FtsH_fam ATP-depende 94.7 0.35 7.6E-06 55.8 13.1 50 170-219 53-111 (495)
235 cd01123 Rad51_DMC1_radA Rad51_ 94.7 0.085 1.8E-06 54.4 7.3 55 195-250 18-76 (235)
236 TIGR01243 CDC48 AAA family ATP 94.7 0.24 5.3E-06 60.1 12.3 49 170-218 176-234 (733)
237 PRK09361 radB DNA repair and r 94.7 0.073 1.6E-06 54.4 6.7 45 195-242 22-66 (225)
238 PRK06835 DNA replication prote 94.6 0.26 5.6E-06 53.1 11.0 36 197-234 184-219 (329)
239 PF00004 AAA: ATPase family as 94.6 0.025 5.3E-07 52.2 2.8 49 199-252 1-54 (132)
240 CHL00176 ftsH cell division pr 94.6 0.37 8E-06 56.8 13.0 48 172-219 183-239 (638)
241 PF00158 Sigma54_activat: Sigm 94.6 0.047 1E-06 52.7 4.7 44 174-218 1-44 (168)
242 PRK04040 adenylate kinase; Pro 94.6 0.027 5.9E-07 55.5 3.2 23 196-218 2-24 (188)
243 TIGR03346 chaperone_ClpB ATP-d 94.6 0.035 7.7E-07 68.2 4.8 45 172-219 173-217 (852)
244 PRK03839 putative kinase; Prov 94.5 0.026 5.7E-07 55.4 3.0 22 198-219 2-23 (180)
245 COG2812 DnaX DNA polymerase II 94.5 0.32 6.8E-06 55.0 11.6 176 172-368 16-214 (515)
246 PRK00625 shikimate kinase; Pro 94.4 0.028 6.1E-07 54.4 2.9 21 198-218 2-22 (173)
247 COG0470 HolB ATPase involved i 94.4 0.26 5.7E-06 53.5 10.8 138 173-322 2-167 (325)
248 TIGR01360 aden_kin_iso1 adenyl 94.4 0.034 7.5E-07 55.0 3.5 24 195-218 2-25 (188)
249 PF01695 IstB_IS21: IstB-like 94.4 0.056 1.2E-06 52.8 4.8 37 196-234 47-83 (178)
250 cd01393 recA_like RecA is a b 94.4 0.11 2.3E-06 53.3 7.2 47 195-243 18-70 (226)
251 COG1428 Deoxynucleoside kinase 94.3 0.031 6.8E-07 54.4 2.8 24 196-219 4-27 (216)
252 PF07726 AAA_3: ATPase family 94.3 0.021 4.6E-07 51.2 1.5 27 199-227 2-28 (131)
253 KOG0991 Replication factor C, 94.3 0.054 1.2E-06 53.1 4.3 67 171-240 26-92 (333)
254 COG0572 Udk Uridine kinase [Nu 94.3 0.046 1E-06 54.1 3.9 24 195-218 7-30 (218)
255 CHL00195 ycf46 Ycf46; Provisio 94.2 0.53 1.2E-05 53.6 12.9 48 172-219 228-282 (489)
256 PRK06526 transposase; Provisio 94.2 0.1 2.2E-06 54.0 6.6 23 197-219 99-121 (254)
257 COG0467 RAD55 RecA-superfamily 94.2 0.091 2E-06 55.0 6.4 41 195-237 22-62 (260)
258 COG0003 ArsA Predicted ATPase 94.2 0.065 1.4E-06 57.1 5.2 49 196-246 2-50 (322)
259 PRK11889 flhF flagellar biosyn 94.2 0.22 4.7E-06 54.1 9.0 39 195-235 240-278 (436)
260 TIGR01243 CDC48 AAA family ATP 94.2 0.54 1.2E-05 57.2 13.8 50 170-219 451-510 (733)
261 PRK05439 pantothenate kinase; 94.1 0.071 1.5E-06 56.5 5.3 25 194-218 84-108 (311)
262 COG2019 AdkA Archaeal adenylat 94.1 0.047 1E-06 50.8 3.3 24 195-218 3-26 (189)
263 PRK00131 aroK shikimate kinase 94.1 0.042 9E-07 53.6 3.3 24 195-218 3-26 (175)
264 TIGR03346 chaperone_ClpB ATP-d 94.1 0.29 6.3E-06 60.3 11.2 47 172-218 565-617 (852)
265 TIGR03345 VI_ClpV1 type VI sec 94.0 0.21 4.5E-06 61.2 9.7 47 172-218 566-618 (852)
266 PF13306 LRR_5: Leucine rich r 94.0 0.091 2E-06 48.2 5.2 103 541-662 7-111 (129)
267 TIGR00764 lon_rel lon-related 94.0 0.14 3E-06 60.2 7.8 77 171-255 17-94 (608)
268 cd02028 UMPK_like Uridine mono 94.0 0.048 1.1E-06 53.3 3.5 21 198-218 1-21 (179)
269 PRK08939 primosomal protein Dn 93.9 0.58 1.3E-05 49.9 11.8 57 176-234 135-192 (306)
270 cd02024 NRK1 Nicotinamide ribo 93.9 0.038 8.2E-07 54.1 2.6 22 198-219 1-22 (187)
271 COG3640 CooC CO dehydrogenase 93.9 0.074 1.6E-06 52.6 4.5 41 198-240 2-43 (255)
272 PF13504 LRR_7: Leucine rich r 93.9 0.039 8.4E-07 30.5 1.5 16 632-647 2-17 (17)
273 PRK13765 ATP-dependent proteas 93.9 0.098 2.1E-06 61.2 6.3 78 171-255 30-107 (637)
274 PRK10536 hypothetical protein; 93.9 0.096 2.1E-06 53.4 5.5 54 172-230 55-108 (262)
275 COG1936 Predicted nucleotide k 93.9 0.045 9.8E-07 51.5 2.8 20 198-217 2-21 (180)
276 PRK06964 DNA polymerase III su 93.8 1.1 2.4E-05 48.4 13.8 81 275-375 146-226 (342)
277 KOG3864 Uncharacterized conser 93.8 0.016 3.4E-07 55.8 -0.2 82 768-849 102-185 (221)
278 PF00910 RNA_helicase: RNA hel 93.8 0.036 7.9E-07 49.0 2.1 21 199-219 1-21 (107)
279 COG0714 MoxR-like ATPases [Gen 93.8 0.12 2.7E-06 56.1 6.7 67 171-247 23-89 (329)
280 PRK00889 adenylylsulfate kinas 93.8 0.055 1.2E-06 52.9 3.6 25 195-219 3-27 (175)
281 PF06309 Torsin: Torsin; Inte 93.8 0.11 2.3E-06 46.6 5.0 49 171-219 24-76 (127)
282 cd02023 UMPK Uridine monophosp 93.8 0.041 8.8E-07 55.0 2.7 21 198-218 1-21 (198)
283 cd02025 PanK Pantothenate kina 93.8 0.04 8.6E-07 55.9 2.5 21 198-218 1-21 (220)
284 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.042 9E-07 54.1 2.6 21 198-218 1-21 (183)
285 TIGR00554 panK_bact pantothena 93.7 0.085 1.8E-06 55.5 5.0 24 195-218 61-84 (290)
286 PF14532 Sigma54_activ_2: Sigm 93.7 0.044 9.5E-07 51.1 2.6 44 175-219 1-44 (138)
287 PF01078 Mg_chelatase: Magnesi 93.7 0.1 2.2E-06 51.3 5.2 42 172-218 3-44 (206)
288 TIGR02322 phosphon_PhnN phosph 93.7 0.051 1.1E-06 53.3 3.2 23 197-219 2-24 (179)
289 KOG1532 GTPase XAB1, interacts 93.7 0.051 1.1E-06 54.5 3.0 26 195-220 18-43 (366)
290 PRK09183 transposase/IS protei 93.7 0.2 4.4E-06 52.2 7.7 23 197-219 103-125 (259)
291 PRK06217 hypothetical protein; 93.7 0.048 1E-06 53.7 2.9 22 198-219 3-24 (183)
292 PF07728 AAA_5: AAA domain (dy 93.6 0.1 2.2E-06 48.7 4.9 42 199-245 2-43 (139)
293 cd01120 RecA-like_NTPases RecA 93.6 0.067 1.4E-06 51.3 3.8 39 198-238 1-39 (165)
294 KOG0473 Leucine-rich repeat pr 93.6 0.0028 6.1E-08 61.7 -5.6 81 582-663 40-120 (326)
295 PRK13947 shikimate kinase; Pro 93.6 0.05 1.1E-06 52.9 2.8 21 198-218 3-23 (171)
296 TIGR03499 FlhF flagellar biosy 93.5 0.32 7E-06 51.4 9.0 42 195-236 193-234 (282)
297 PRK13949 shikimate kinase; Pro 93.5 0.054 1.2E-06 52.4 2.9 22 198-219 3-24 (169)
298 cd02020 CMPK Cytidine monophos 93.5 0.051 1.1E-06 51.2 2.7 21 198-218 1-21 (147)
299 COG1222 RPT1 ATP-dependent 26S 93.4 0.12 2.5E-06 54.4 5.2 191 172-381 151-374 (406)
300 cd02021 GntK Gluconate kinase 93.4 0.056 1.2E-06 51.2 2.7 22 198-219 1-22 (150)
301 PRK10463 hydrogenase nickel in 93.4 0.15 3.3E-06 53.2 6.0 24 195-218 103-126 (290)
302 COG1124 DppF ABC-type dipeptid 93.3 0.096 2.1E-06 52.2 4.2 24 195-218 32-55 (252)
303 PRK03846 adenylylsulfate kinas 93.3 0.074 1.6E-06 53.1 3.6 24 195-218 23-46 (198)
304 TIGR00064 ftsY signal recognit 93.3 0.1 2.2E-06 54.7 4.7 39 195-235 71-109 (272)
305 cd00227 CPT Chloramphenicol (C 93.2 0.066 1.4E-06 52.3 3.0 22 197-218 3-24 (175)
306 TIGR02640 gas_vesic_GvpN gas v 93.2 0.21 4.5E-06 52.3 6.9 55 180-244 10-64 (262)
307 PRK10751 molybdopterin-guanine 93.2 0.084 1.8E-06 50.8 3.5 25 195-219 5-29 (173)
308 TIGR02236 recomb_radA DNA repa 93.2 0.23 4.9E-06 53.6 7.4 56 195-251 94-153 (310)
309 TIGR03263 guanyl_kin guanylate 93.1 0.074 1.6E-06 52.2 3.3 22 197-218 2-23 (180)
310 TIGR01287 nifH nitrogenase iro 93.1 0.065 1.4E-06 56.7 3.0 41 197-239 1-41 (275)
311 PRK04301 radA DNA repair and r 93.1 0.23 4.9E-06 53.7 7.2 56 195-251 101-160 (317)
312 PF04665 Pox_A32: Poxvirus A32 93.0 0.11 2.3E-06 52.8 4.2 36 197-234 14-49 (241)
313 PRK12339 2-phosphoglycerate ki 93.0 0.086 1.9E-06 52.3 3.4 25 195-219 2-26 (197)
314 TIGR03877 thermo_KaiC_1 KaiC d 93.0 0.27 5.9E-06 50.6 7.3 48 195-246 20-67 (237)
315 COG3267 ExeA Type II secretory 92.9 4.1 8.9E-05 41.3 14.9 172 195-376 50-247 (269)
316 COG0563 Adk Adenylate kinase a 92.9 0.075 1.6E-06 51.7 2.8 22 198-219 2-23 (178)
317 KOG0731 AAA+-type ATPase conta 92.9 1.3 2.9E-05 52.0 13.3 180 172-371 311-521 (774)
318 PLN02318 phosphoribulokinase/u 92.9 0.12 2.6E-06 58.7 4.7 32 186-218 56-87 (656)
319 COG1875 NYN ribonuclease and A 92.9 0.55 1.2E-05 49.6 9.1 53 175-230 227-280 (436)
320 PF02374 ArsA_ATPase: Anion-tr 92.9 0.13 2.9E-06 54.9 4.9 43 197-241 2-44 (305)
321 PRK13948 shikimate kinase; Pro 92.9 0.091 2E-06 51.3 3.3 24 195-218 9-32 (182)
322 KOG2228 Origin recognition com 92.9 0.82 1.8E-05 47.9 10.2 84 170-255 22-107 (408)
323 TIGR02012 tigrfam_recA protein 92.8 0.17 3.6E-06 54.0 5.5 44 195-240 54-97 (321)
324 TIGR02239 recomb_RAD51 DNA rep 92.8 0.22 4.8E-06 53.5 6.5 67 183-251 84-154 (316)
325 PF00625 Guanylate_kin: Guanyl 92.8 0.13 2.7E-06 50.7 4.4 37 196-234 2-38 (183)
326 TIGR01425 SRP54_euk signal rec 92.8 0.18 3.8E-06 55.9 5.8 24 195-218 99-122 (429)
327 PF08423 Rad51: Rad51; InterP 92.8 0.23 5E-06 51.6 6.4 56 195-251 37-96 (256)
328 PRK14738 gmk guanylate kinase; 92.8 0.1 2.2E-06 52.5 3.6 24 195-218 12-35 (206)
329 PF03205 MobB: Molybdopterin g 92.8 0.085 1.8E-06 49.1 2.9 38 197-236 1-39 (140)
330 PRK14530 adenylate kinase; Pro 92.8 0.082 1.8E-06 53.6 3.0 22 197-218 4-25 (215)
331 cd00464 SK Shikimate kinase (S 92.8 0.081 1.8E-06 50.3 2.8 20 199-218 2-21 (154)
332 PF05673 DUF815: Protein of un 92.7 0.24 5.2E-06 50.0 6.1 51 168-218 23-74 (249)
333 cd00983 recA RecA is a bacter 92.7 0.21 4.5E-06 53.3 6.0 44 195-240 54-97 (325)
334 cd02117 NifH_like This family 92.7 0.086 1.9E-06 53.3 3.1 22 197-218 1-22 (212)
335 cd00071 GMPK Guanosine monopho 92.7 0.091 2E-06 48.8 3.0 22 198-219 1-22 (137)
336 KOG3864 Uncharacterized conser 92.7 0.022 4.8E-07 54.8 -1.2 83 794-878 104-188 (221)
337 PRK00300 gmk guanylate kinase; 92.6 0.1 2.2E-06 52.5 3.4 25 195-219 4-28 (205)
338 PRK13975 thymidylate kinase; P 92.6 0.094 2E-06 52.3 3.2 23 197-219 3-25 (196)
339 TIGR00763 lon ATP-dependent pr 92.6 0.12 2.5E-06 63.1 4.6 49 171-219 319-370 (775)
340 COG0542 clpA ATP-binding subun 92.6 0.13 2.8E-06 60.5 4.7 44 172-218 170-213 (786)
341 PRK14974 cell division protein 92.6 0.36 7.7E-06 52.0 7.7 24 195-218 139-162 (336)
342 cd01672 TMPK Thymidine monopho 92.6 0.21 4.5E-06 49.8 5.7 23 197-219 1-23 (200)
343 PRK05057 aroK shikimate kinase 92.6 0.1 2.3E-06 50.6 3.3 24 196-219 4-27 (172)
344 PRK00771 signal recognition pa 92.5 0.32 7E-06 54.3 7.5 25 195-219 94-118 (437)
345 PF08477 Miro: Miro-like prote 92.5 0.1 2.2E-06 47.0 3.1 22 199-220 2-23 (119)
346 PRK10078 ribose 1,5-bisphospho 92.5 0.1 2.2E-06 51.5 3.3 23 197-219 3-25 (186)
347 PF13504 LRR_7: Leucine rich r 92.5 0.073 1.6E-06 29.4 1.2 16 609-624 2-17 (17)
348 cd02027 APSK Adenosine 5'-phos 92.5 0.093 2E-06 49.6 2.8 21 198-218 1-21 (149)
349 PRK13946 shikimate kinase; Pro 92.5 0.098 2.1E-06 51.5 3.1 23 196-218 10-32 (184)
350 PLN02200 adenylate kinase fami 92.5 0.11 2.4E-06 53.1 3.5 24 195-218 42-65 (234)
351 cd01124 KaiC KaiC is a circadi 92.4 0.13 2.8E-06 50.8 3.8 37 198-236 1-37 (187)
352 TIGR02902 spore_lonB ATP-depen 92.3 0.14 3E-06 59.3 4.6 44 172-218 65-108 (531)
353 PF03308 ArgK: ArgK protein; 92.3 0.16 3.5E-06 51.5 4.3 64 180-246 14-79 (266)
354 PRK10416 signal recognition pa 92.3 0.28 6E-06 52.7 6.4 25 195-219 113-137 (318)
355 PRK13230 nitrogenase reductase 92.3 0.12 2.7E-06 54.7 3.8 39 197-237 2-40 (279)
356 PLN03186 DNA repair protein RA 92.3 0.25 5.3E-06 53.5 6.0 67 184-252 112-182 (342)
357 cd01133 F1-ATPase_beta F1 ATP 92.3 0.23 5E-06 51.5 5.5 41 195-237 68-109 (274)
358 COG1224 TIP49 DNA helicase TIP 92.2 0.23 4.9E-06 52.2 5.3 49 170-219 37-88 (450)
359 cd00820 PEPCK_HprK Phosphoenol 92.2 0.13 2.8E-06 44.9 3.1 22 196-217 15-36 (107)
360 PRK13768 GTPase; Provisional 92.2 0.17 3.7E-06 52.6 4.6 23 196-218 2-24 (253)
361 PRK13232 nifH nitrogenase redu 92.2 0.11 2.3E-06 55.0 3.2 22 197-218 2-23 (273)
362 COG1703 ArgK Putative periplas 92.2 0.16 3.6E-06 52.2 4.2 68 182-250 38-105 (323)
363 PLN03187 meiotic recombination 92.1 0.28 6E-06 53.0 6.2 57 195-252 125-185 (344)
364 TIGR02238 recomb_DMC1 meiotic 92.1 0.28 6.2E-06 52.4 6.2 67 184-252 85-155 (313)
365 TIGR02030 BchI-ChlI magnesium 92.1 0.2 4.4E-06 54.0 5.1 44 172-218 4-47 (337)
366 PRK14527 adenylate kinase; Pro 92.1 0.13 2.7E-06 51.1 3.4 24 195-218 5-28 (191)
367 COG0237 CoaE Dephospho-CoA kin 92.1 0.12 2.7E-06 51.1 3.2 23 196-218 2-24 (201)
368 CHL00095 clpC Clp protease ATP 92.1 0.82 1.8E-05 56.3 10.9 47 172-218 509-561 (821)
369 cd02040 NifH NifH gene encodes 92.1 0.17 3.6E-06 53.4 4.4 43 197-241 2-44 (270)
370 PF03266 NTPase_1: NTPase; In 92.0 0.11 2.5E-06 50.0 2.9 21 199-219 2-22 (168)
371 TIGR01313 therm_gnt_kin carboh 92.0 0.096 2.1E-06 50.4 2.4 20 199-218 1-20 (163)
372 PRK13407 bchI magnesium chelat 92.0 0.18 3.8E-06 54.4 4.5 45 171-218 7-51 (334)
373 KOG3347 Predicted nucleotide k 92.0 0.12 2.5E-06 47.2 2.6 34 197-237 8-41 (176)
374 cd01983 Fer4_NifH The Fer4_Nif 92.0 0.12 2.6E-06 44.4 2.7 21 198-218 1-21 (99)
375 COG0468 RecA RecA/RadA recombi 91.9 0.35 7.7E-06 50.3 6.5 48 194-243 58-105 (279)
376 PRK13695 putative NTPase; Prov 91.9 0.14 3.1E-06 49.8 3.4 22 198-219 2-23 (174)
377 PRK09354 recA recombinase A; P 91.9 0.26 5.6E-06 53.0 5.5 55 184-240 48-102 (349)
378 KOG0727 26S proteasome regulat 91.9 0.27 5.9E-06 48.7 5.2 48 172-219 155-212 (408)
379 cd00544 CobU Adenosylcobinamid 91.9 0.8 1.7E-05 44.2 8.4 38 198-240 1-38 (169)
380 TIGR00176 mobB molybdopterin-g 91.9 0.12 2.6E-06 49.2 2.7 22 198-219 1-22 (155)
381 PRK06067 flagellar accessory p 91.8 0.39 8.5E-06 49.3 6.8 41 195-237 24-64 (234)
382 PRK05703 flhF flagellar biosyn 91.8 0.56 1.2E-05 52.5 8.4 41 196-236 221-261 (424)
383 PF13306 LRR_5: Leucine rich r 91.8 0.34 7.3E-06 44.3 5.7 113 524-656 14-128 (129)
384 PRK06761 hypothetical protein; 91.8 0.22 4.8E-06 52.0 4.8 23 197-219 4-26 (282)
385 TIGR02016 BchX chlorophyllide 91.8 0.17 3.7E-06 53.9 4.1 40 197-238 1-40 (296)
386 PF06068 TIP49: TIP49 C-termin 91.8 0.43 9.4E-06 51.0 6.9 52 171-225 23-77 (398)
387 CHL00081 chlI Mg-protoporyphyr 91.8 0.19 4.1E-06 54.3 4.4 46 170-218 15-60 (350)
388 PRK09435 membrane ATPase/prote 91.8 0.37 8.1E-06 51.7 6.6 36 182-218 43-78 (332)
389 TIGR00750 lao LAO/AO transport 91.8 0.21 4.5E-06 53.4 4.8 37 182-219 21-57 (300)
390 PF13245 AAA_19: Part of AAA d 91.8 0.39 8.6E-06 39.2 5.3 22 197-218 11-33 (76)
391 PRK05342 clpX ATP-dependent pr 91.7 0.16 3.4E-06 56.5 3.9 47 172-218 71-130 (412)
392 PRK12726 flagellar biosynthesi 91.7 0.48 1.1E-05 51.2 7.3 40 195-236 205-244 (407)
393 PRK04182 cytidylate kinase; Pr 91.7 0.14 3E-06 50.2 3.1 22 198-219 2-23 (180)
394 TIGR00073 hypB hydrogenase acc 91.7 0.15 3.3E-06 51.2 3.5 24 195-218 21-44 (207)
395 PRK14737 gmk guanylate kinase; 91.7 0.17 3.7E-06 49.8 3.7 24 195-218 3-26 (186)
396 TIGR00602 rad24 checkpoint pro 91.7 0.22 4.7E-06 58.3 5.1 49 171-219 83-133 (637)
397 cd01858 NGP_1 NGP-1. Autoanti 91.7 0.29 6.3E-06 46.7 5.2 45 176-220 82-126 (157)
398 PRK05973 replicative DNA helic 91.7 0.37 8.1E-06 49.0 6.2 49 195-247 63-111 (237)
399 COG0194 Gmk Guanylate kinase [ 91.7 0.21 4.6E-06 47.8 4.1 24 196-219 4-27 (191)
400 COG1100 GTPase SAR1 and relate 91.6 0.13 2.8E-06 52.3 2.9 23 197-219 6-28 (219)
401 PF03029 ATP_bind_1: Conserved 91.6 0.15 3.2E-06 52.3 3.3 20 201-220 1-20 (238)
402 TIGR02173 cyt_kin_arch cytidyl 91.6 0.14 3.1E-06 49.6 3.1 21 198-218 2-22 (171)
403 COG0703 AroK Shikimate kinase 91.6 0.14 3E-06 48.7 2.8 28 197-226 3-30 (172)
404 PF08298 AAA_PrkA: PrkA AAA do 91.6 0.24 5.2E-06 52.7 4.8 47 172-218 61-110 (358)
405 PRK14493 putative bifunctional 91.6 0.2 4.3E-06 52.4 4.2 35 197-234 2-36 (274)
406 PRK11608 pspF phage shock prot 91.6 0.19 4.1E-06 54.4 4.3 46 172-218 6-51 (326)
407 TIGR00041 DTMP_kinase thymidyl 91.5 0.36 7.7E-06 48.0 5.9 23 197-219 4-26 (195)
408 PTZ00035 Rad51 protein; Provis 91.5 0.51 1.1E-05 51.2 7.4 66 184-251 107-176 (337)
409 PRK10867 signal recognition pa 91.5 0.39 8.4E-06 53.6 6.6 24 195-218 99-122 (433)
410 PRK04132 replication factor C 91.5 0.89 1.9E-05 54.9 10.0 148 204-371 574-728 (846)
411 PRK05800 cobU adenosylcobinami 91.5 0.34 7.4E-06 46.8 5.5 22 197-218 2-23 (170)
412 PF03193 DUF258: Protein of un 91.4 0.31 6.8E-06 46.2 5.0 35 179-219 24-58 (161)
413 PTZ00494 tuzin-like protein; P 91.4 0.59 1.3E-05 50.8 7.5 81 167-255 366-446 (664)
414 PRK13235 nifH nitrogenase redu 91.4 0.15 3.1E-06 54.0 3.1 22 197-218 2-23 (274)
415 COG4608 AppF ABC-type oligopep 91.4 0.22 4.8E-06 50.8 4.2 24 195-218 38-61 (268)
416 PLN02348 phosphoribulokinase 91.4 0.23 4.9E-06 54.0 4.5 24 195-218 48-71 (395)
417 PRK13233 nifH nitrogenase redu 91.4 0.15 3.2E-06 54.0 3.2 22 197-218 3-24 (275)
418 PRK14722 flhF flagellar biosyn 91.4 0.42 9.1E-06 52.1 6.6 57 195-253 136-195 (374)
419 PRK08699 DNA polymerase III su 91.4 0.81 1.8E-05 49.3 8.7 56 277-335 129-184 (325)
420 cd04139 RalA_RalB RalA/RalB su 91.3 0.17 3.7E-06 48.5 3.3 22 198-219 2-23 (164)
421 PRK13236 nitrogenase reductase 91.3 0.22 4.7E-06 53.2 4.4 24 195-218 5-28 (296)
422 TIGR00382 clpX endopeptidase C 91.3 0.2 4.4E-06 55.4 4.2 48 171-218 76-138 (413)
423 PF13604 AAA_30: AAA domain; P 91.3 0.52 1.1E-05 46.8 6.8 34 182-218 7-40 (196)
424 PRK03731 aroL shikimate kinase 91.3 0.15 3.3E-06 49.5 2.9 22 197-218 3-24 (171)
425 PRK10865 protein disaggregatio 91.3 0.31 6.6E-06 59.9 6.1 47 172-218 568-620 (857)
426 COG1126 GlnQ ABC-type polar am 91.3 0.28 6.1E-06 48.1 4.5 37 195-234 27-63 (240)
427 cd02022 DPCK Dephospho-coenzym 91.3 0.14 3.1E-06 50.1 2.7 21 198-218 1-21 (179)
428 COG2607 Predicted ATPase (AAA+ 91.3 1.5 3.3E-05 43.8 9.5 123 169-305 57-184 (287)
429 TIGR03574 selen_PSTK L-seryl-t 91.3 0.13 2.9E-06 53.4 2.6 22 198-219 1-22 (249)
430 PRK09825 idnK D-gluconate kina 91.3 0.17 3.6E-06 49.4 3.1 22 197-218 4-25 (176)
431 PF00005 ABC_tran: ABC transpo 91.3 0.16 3.4E-06 47.2 2.8 34 196-232 11-44 (137)
432 KOG0744 AAA+-type ATPase [Post 91.3 0.16 3.4E-06 52.5 3.0 40 195-234 176-217 (423)
433 TIGR03878 thermo_KaiC_2 KaiC d 91.2 0.31 6.7E-06 50.9 5.3 40 195-236 35-74 (259)
434 PF06564 YhjQ: YhjQ protein; 91.2 0.23 4.9E-06 50.5 4.1 37 197-235 2-39 (243)
435 TIGR03881 KaiC_arch_4 KaiC dom 91.2 0.35 7.5E-06 49.6 5.6 41 195-237 19-59 (229)
436 COG1419 FlhF Flagellar GTP-bin 91.2 0.15 3.3E-06 55.1 3.0 56 180-236 186-243 (407)
437 PRK12727 flagellar biosynthesi 91.2 0.68 1.5E-05 52.4 8.1 24 195-218 349-372 (559)
438 PRK14732 coaE dephospho-CoA ki 91.2 1 2.2E-05 44.7 8.6 21 198-218 1-21 (196)
439 PRK05537 bifunctional sulfate 91.2 0.29 6.3E-06 56.9 5.5 46 172-218 369-414 (568)
440 PRK13231 nitrogenase reductase 91.2 0.29 6.3E-06 51.4 5.1 39 197-238 3-41 (264)
441 PF13521 AAA_28: AAA domain; P 91.1 0.14 3E-06 49.3 2.4 20 199-218 2-21 (163)
442 COG2884 FtsE Predicted ATPase 91.1 0.7 1.5E-05 44.4 6.8 26 195-220 27-52 (223)
443 PRK08154 anaerobic benzoate ca 91.1 0.27 5.9E-06 52.8 4.8 24 195-218 132-155 (309)
444 PRK08533 flagellar accessory p 91.1 0.47 1E-05 48.5 6.3 49 195-247 23-71 (230)
445 PLN02796 D-glycerate 3-kinase 91.1 0.46 1E-05 50.9 6.4 24 195-218 99-122 (347)
446 PRK04328 hypothetical protein; 91.0 0.48 1E-05 49.1 6.5 41 195-237 22-62 (249)
447 PRK12608 transcription termina 91.0 0.6 1.3E-05 50.5 7.2 69 181-253 120-191 (380)
448 PRK08356 hypothetical protein; 91.0 0.21 4.5E-06 49.8 3.6 22 196-217 5-26 (195)
449 cd01428 ADK Adenylate kinase ( 91.0 0.16 3.5E-06 50.4 2.8 20 199-218 2-21 (194)
450 PTZ00088 adenylate kinase 1; P 91.0 0.17 3.6E-06 51.6 2.9 21 198-218 8-28 (229)
451 KOG1969 DNA replication checkp 91.0 0.38 8.3E-06 55.3 5.9 54 194-252 324-377 (877)
452 cd03115 SRP The signal recogni 90.9 0.27 5.9E-06 47.8 4.3 21 198-218 2-22 (173)
453 PRK12724 flagellar biosynthesi 90.9 0.31 6.7E-06 53.6 5.0 23 196-218 223-245 (432)
454 PRK14532 adenylate kinase; Pro 90.9 0.17 3.7E-06 50.0 2.9 20 199-218 3-22 (188)
455 cd03114 ArgK-like The function 90.9 0.24 5.3E-06 46.6 3.7 21 198-218 1-21 (148)
456 cd01131 PilT Pilus retraction 90.9 0.27 5.8E-06 49.0 4.2 22 197-218 2-23 (198)
457 TIGR00959 ffh signal recogniti 90.9 0.6 1.3E-05 52.1 7.3 24 195-218 98-121 (428)
458 PF01926 MMR_HSR1: 50S ribosom 90.8 0.19 4.1E-06 45.1 2.9 21 199-219 2-22 (116)
459 KOG0726 26S proteasome regulat 90.8 0.39 8.5E-06 48.8 5.2 54 171-226 184-247 (440)
460 PRK14733 coaE dephospho-CoA ki 90.8 0.94 2E-05 45.1 7.9 24 195-218 5-28 (204)
461 cd02034 CooC The accessory pro 90.8 0.31 6.8E-06 43.7 4.1 21 199-219 2-22 (116)
462 cd03116 MobB Molybdenum is an 90.8 0.22 4.7E-06 47.5 3.3 22 197-218 2-23 (159)
463 PRK08099 bifunctional DNA-bind 90.7 0.18 3.9E-06 55.9 3.1 24 195-218 218-241 (399)
464 PRK15453 phosphoribulokinase; 90.7 0.22 4.7E-06 51.6 3.4 24 195-218 4-27 (290)
465 cd01862 Rab7 Rab7 subfamily. 90.7 0.2 4.4E-06 48.4 3.1 22 198-219 2-23 (172)
466 PF13086 AAA_11: AAA domain; P 90.7 0.58 1.3E-05 47.8 6.8 52 198-249 19-75 (236)
467 cd02032 Bchl_like This family 90.7 0.27 5.9E-06 51.7 4.3 21 198-218 2-22 (267)
468 TIGR01281 DPOR_bchL light-inde 90.6 0.22 4.7E-06 52.5 3.6 21 198-218 2-22 (268)
469 PF07693 KAP_NTPase: KAP famil 90.6 0.74 1.6E-05 50.0 7.8 75 178-254 2-83 (325)
470 cd01130 VirB11-like_ATPase Typ 90.6 0.36 7.8E-06 47.6 4.8 35 180-218 13-47 (186)
471 PLN03046 D-glycerate 3-kinase; 90.6 0.98 2.1E-05 49.4 8.3 24 195-218 211-234 (460)
472 TIGR01166 cbiO cobalt transpor 90.6 0.32 6.9E-06 48.2 4.5 23 196-218 18-40 (190)
473 PRK01184 hypothetical protein; 90.5 0.21 4.6E-06 49.2 3.1 21 197-218 2-22 (184)
474 PF00142 Fer4_NifH: 4Fe-4S iro 90.5 0.21 4.6E-06 50.8 3.1 39 197-237 1-39 (273)
475 PF10662 PduV-EutP: Ethanolami 90.5 0.22 4.9E-06 45.9 3.0 23 197-219 2-24 (143)
476 KOG0734 AAA+-type ATPase conta 90.5 0.28 6E-06 54.1 4.1 49 172-220 304-361 (752)
477 PRK13185 chlL protochlorophyll 90.5 0.32 6.9E-06 51.3 4.7 22 197-218 3-24 (270)
478 PHA02244 ATPase-like protein 90.5 0.28 6.1E-06 52.8 4.2 42 172-218 96-141 (383)
479 TIGR00960 3a0501s02 Type II (G 90.5 0.32 6.9E-06 49.3 4.5 34 196-232 29-62 (216)
480 PRK14531 adenylate kinase; Pro 90.4 0.22 4.7E-06 49.0 3.1 22 197-218 3-24 (183)
481 cd03297 ABC_ModC_molybdenum_tr 90.4 0.36 7.7E-06 48.9 4.8 34 195-232 23-56 (214)
482 TIGR02974 phageshock_pspF psp 90.4 0.3 6.4E-06 52.9 4.3 44 174-218 1-44 (329)
483 cd04119 RJL RJL (RabJ-Like) su 90.4 0.22 4.8E-06 47.8 3.1 21 199-219 3-23 (168)
484 cd03269 ABC_putative_ATPase Th 90.3 0.34 7.4E-06 48.8 4.5 35 195-232 25-59 (210)
485 COG1763 MobB Molybdopterin-gua 90.3 0.19 4.1E-06 47.6 2.4 24 196-219 2-25 (161)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.3 0.34 7.3E-06 49.2 4.4 23 196-218 30-52 (218)
487 TIGR02673 FtsE cell division A 90.2 0.35 7.7E-06 48.9 4.5 34 196-232 28-61 (214)
488 TIGR00455 apsK adenylylsulfate 90.2 0.28 6.1E-06 48.2 3.7 24 195-218 17-40 (184)
489 smart00173 RAS Ras subfamily o 90.2 0.23 4.9E-06 47.7 3.0 22 198-219 2-23 (164)
490 cd03222 ABC_RNaseL_inhibitor T 90.1 0.38 8.3E-06 46.8 4.4 23 196-218 25-47 (177)
491 PLN02165 adenylate isopentenyl 90.1 0.25 5.5E-06 52.6 3.4 25 195-219 42-66 (334)
492 cd03229 ABC_Class3 This class 90.1 0.39 8.5E-06 47.0 4.5 23 196-218 26-48 (178)
493 cd03265 ABC_DrrA DrrA is the A 90.0 0.37 8.1E-06 49.0 4.5 34 196-232 26-59 (220)
494 PRK11034 clpA ATP-dependent Cl 90.0 0.41 8.9E-06 57.5 5.4 47 172-218 458-510 (758)
495 KOG0733 Nuclear AAA ATPase (VC 90.0 0.47 1E-05 53.4 5.4 51 169-219 187-246 (802)
496 PRK06921 hypothetical protein; 90.0 0.35 7.5E-06 50.6 4.3 37 196-234 117-154 (266)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 89.9 0.41 8.8E-06 44.9 4.4 25 195-219 25-49 (144)
498 PRK12338 hypothetical protein; 89.9 0.28 6.1E-06 52.0 3.5 24 195-218 3-26 (319)
499 cd01121 Sms Sms (bacterial rad 89.8 0.47 1E-05 52.1 5.4 52 182-236 69-120 (372)
500 PHA02575 1 deoxynucleoside mon 89.8 0.26 5.7E-06 49.0 3.0 21 198-218 2-22 (227)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-84 Score=762.97 Aligned_cols=788 Identities=27% Similarity=0.337 Sum_probs=599.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHhhhhhccccccccC-cc-cchhh-----hhhhhhhhHHHHHHH
Q 044931 3 AQAFVSRLYNQLENLLREESTGSDPRFQEQVQEASRYLPSLEEFPEDDVGS-AS-GVLLQ-----LQAVYLVEDVTDTLL 75 (889)
Q Consensus 3 a~~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~-~~-~~~~~-----~~~~yd~eD~lD~~~ 75 (889)
|++.++..++|+.+++.+++ ..+.+.++.+..|++.|..++++++||+++ .+ ..+.. ++++|++||+++.+.
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~-~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRES-ECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred CCeEEEEehhhHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778899999999999 999999999999999999999999999998 33 22221 889999999999998
Q ss_pred HHHHHHHhhcc--c-Ccchhhhh-----hhhhhhhhhH------HHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccc
Q 044931 76 VLKQFLEIKRR--D-NNVFKKFL-----WRRSSSSRQI------QLTGDMKKLAKALYNHLHLIHKKEAAETTILKIDDF 141 (889)
Q Consensus 76 ~~~~~~~~~~~--~-~~~~~~~~-----~~~~~~~i~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (889)
. +........ . ++...+.+ .+..+..+.. .+.+.++.| +.....
T Consensus 80 v-~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l-------------------~~~~~~-- 137 (889)
T KOG4658|consen 80 V-EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESL-------------------GSKGVF-- 137 (889)
T ss_pred H-HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHh-------------------ccccce--
Confidence 8 665421110 0 00011111 1111122111 344444444 322210
Q ss_pred cCCcccccccccccccCcccccC-CCCccccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccc
Q 044931 142 IGGITHHVDFWEHHMARPWQRIS-SYCFEQEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 220 (889)
..+.. . ...+..+ +.+..+... ||.+..++++.+.|..++. .+|+|+||||+||||||+.++|+.
T Consensus 138 ~~~~~-------~---~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~---~iv~i~GMGGvGKTTL~~qi~N~~ 203 (889)
T KOG4658|consen 138 EVVGE-------S---LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV---GIVGIYGMGGVGKTTLARQIFNKF 203 (889)
T ss_pred ecccc-------c---ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC---CEEEEECCCcccHHHHHHHHhccc
Confidence 01100 0 0011123 555555556 9999999999999999853 999999999999999999999998
Q ss_pred c-ccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh--------------hhhHHhHHHHHhhh
Q 044931 221 D-VKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA--------------TLTQQVWQVLRNSL 285 (889)
Q Consensus 221 ~-~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~--------------v~~~~~~~~l~~~l 285 (889)
. ++++||.++||+||+.++...++.+|++.++...........++++..+. ||+..+|+.+..++
T Consensus 204 ~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~ 283 (889)
T KOG4658|consen 204 DEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPF 283 (889)
T ss_pred chhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCC
Confidence 8 99999999999999999999999999999887554222222234443333 99999999999999
Q ss_pred ccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhC
Q 044931 286 YYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCG 365 (889)
Q Consensus 286 ~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~ 365 (889)
|.. .+||||++|||++. |+..+.+....+++++|+++|||.||++.|| +.... .+ +.++++|++|+++|+
T Consensus 284 p~~---~~g~KvvlTTRs~~-V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~-~~~~~---~~--~~i~~lak~v~~kC~ 353 (889)
T KOG4658|consen 284 PSR---ENGSKVVLTTRSEE-VCGRAMGVDYPIEVECLTPEEAWDLFQKKVG-PNTLG---SH--PDIEELAKEVAEKCG 353 (889)
T ss_pred CCc---cCCeEEEEEeccHh-hhhccccCCccccccccCccccHHHHHHhhc-ccccc---cc--ccHHHHHHHHHHHhC
Confidence 998 88999999999999 9988444458999999999999999999999 54321 22 458999999999999
Q ss_pred CCchHHHHHhhhhhcccCCChhhHHHHHHhcccC------CCchhhHHHHHHhhccccccchhhhhhhccCCCCcccchh
Q 044931 366 GLPIRIVLLGGLLSATKGRNFQKWSSVIERADVD------KSDGWVSGLLALSYQELPSKLKPFFFYMWFFPRAFEIPVR 439 (889)
Q Consensus 366 GlPLai~~~g~~L~~~~~~~~~~w~~~l~~l~~~------~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp~~~~i~~~ 439 (889)
|+|||++++|+.|+.+.. +++|+++++.+.+. ...+.++++|++||+.||+++|.||+|||+||+||.|+++
T Consensus 354 GLPLAl~viG~~ma~K~t--~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e 431 (889)
T KOG4658|consen 354 GLPLALNVLGGLLACKKT--VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKE 431 (889)
T ss_pred ChHHHHHHHHHHhcCCCc--HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchH
Confidence 999999999999999988 88999999998772 3357899999999999999999999999999999999999
Q ss_pred hhhhhhcccCCcC-----CCchhHHHHHHHHHHHhcceeeeccccCCCcceeecChhHHHhhhhhhh-----hcCeEEEe
Q 044931 440 RLICLWCTEPFVA-----PIDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVFSPEAA-----KAGFFHHQ 509 (889)
Q Consensus 440 ~Li~~w~a~g~i~-----~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~-----~e~~~~~~ 509 (889)
.|+.+|+||||+. ...++.|..|+.+|++++|+...... ++..+|+|||++|++|..++. .++++...
T Consensus 432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~ 509 (889)
T KOG4658|consen 432 KLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSD 509 (889)
T ss_pred HHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEEC
Confidence 9999999999996 46789999999999999999987643 566789999999999999999 66644332
Q ss_pred c-CCCchhccCCccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeE
Q 044931 510 L-ESSSAEEQQPQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTV 588 (889)
Q Consensus 510 ~-~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~ 588 (889)
+ +.........+..+||++++.+.... ......+++|++|.+.+|.. | +......+| . .++.|||
T Consensus 510 ~~~~~~~~~~~~~~~~rr~s~~~~~~~~--~~~~~~~~~L~tLll~~n~~----~------l~~is~~ff-~-~m~~LrV 575 (889)
T KOG4658|consen 510 GVGLSEIPQVKSWNSVRRMSLMNNKIEH--IAGSSENPKLRTLLLQRNSD----W------LLEISGEFF-R-SLPLLRV 575 (889)
T ss_pred CcCccccccccchhheeEEEEeccchhh--ccCCCCCCccceEEEeecch----h------hhhcCHHHH-h-hCcceEE
Confidence 2 11111122355679999999665544 45566777999999999963 0 001444556 6 8999999
Q ss_pred EEecCcc-cCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCC-CcccCchhhhhcccccccccccccC
Q 044931 589 LDLEGVY-KLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHT-KLRFLPDSIWKAKKLQHLYLNWIHS 666 (889)
Q Consensus 589 L~L~~~~-i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~ 666 (889)
|||++|. +.++|. .|++|.|||||+|+++.++.+|.++++|..|.+||+..+ .+..+|..+..|++||+|.+.....
T Consensus 576 LDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL 654 (889)
T ss_pred EECCCCCccCcCCh-HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence 9999876 678988 999999999999999999999999999999999999999 6666676677799999999987543
Q ss_pred CCCCCCcccccccccccccccccCCCccccCCCCCCCCCe----eecccCchhhHHHHHhhhcccccccceecccC-C--
Q 044931 667 PIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIK----LGVKCDSQMAIEFIINLLVCARTDGLVEIEYG-E-- 739 (889)
Q Consensus 667 ~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~-~-- 739 (889)
......++.+.+|++|..+.+...+......+..+.+|+. +.+.++........+..+.+|+.|.+..+... .
T Consensus 655 ~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 655 SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc
Confidence 3334456667777777777665544433455556666653 33322223667778888889999999876221 1
Q ss_pred cc---------cccccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcce
Q 044931 740 AR---------VTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETT 809 (889)
Q Consensus 740 ~~---------~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~ 809 (889)
.. ++++..+.+.++ ..+.+. |.. ++++|+.|.+..|....++++....+..+..+.+..+.+.+....
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~-f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLL-FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML 812 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccc-hhh-ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee
Confidence 11 334444444442 244555 554 449999999999999889999999999999887777777665456
Q ss_pred eCCCCCCcccEEEccccCCCcceeccc----Ccccccceeecccc-cCCCCCCCcc
Q 044931 810 CSSGGFPQLRVLKLWNLFSLEEWTVEK----GAMPRLRELEIRSC-NNLKPPQPQG 860 (889)
Q Consensus 810 ~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~lp~L~~L~l~~C-~~L~~~lp~~ 860 (889)
...++||++..+.+.+-. ++.|.... +.||.+.++.+.+| +++. ..|.+
T Consensus 813 ~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~-~~~~~ 866 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLK-EYPDG 866 (889)
T ss_pred ecCCCCceeEecccCccc-hhheehhcCcccccCccccccceecccccee-ecCCc
Confidence 677889998888888654 77776554 78899999999997 6666 77775
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.8e-60 Score=593.10 Aligned_cols=655 Identities=18% Similarity=0.181 Sum_probs=443.5
Q ss_pred CccccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe---CCcc-----
Q 044931 167 CFEQEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV---RSEA----- 238 (889)
Q Consensus 167 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---~~~~----- 238 (889)
+..+.+++|||+++++++..+|..+.. ++++|+||||||+||||||+++|+ ++..+|++.+|+.. +...
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~~-~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLESE-EVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccccC-ceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 344567899999999999999976655 789999999999999999999999 78889999888742 1110
Q ss_pred ------c-HHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh----------hhhHHhHHHHHhhhccCCCCCCCcEEEEEc
Q 044931 239 ------K-VRDVLIDILQQINDEMLVEASSPEEELASSLA----------TLTQQVWQVLRNSLYYSSSKSRDGKIILTT 301 (889)
Q Consensus 239 ------~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~----------v~~~~~~~~l~~~l~~~~~~~~gs~iivTT 301 (889)
+ ...+..+++.++...... .......+.+++. ||+.+.|+.+...... +++||+|||||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~-~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~---~~~GsrIIiTT 331 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDI-KIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQW---FGSGSRIIVIT 331 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCc-ccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCcc---CCCCcEEEEEe
Confidence 0 112334444443322110 1112234455554 6777788888765443 37899999999
Q ss_pred CCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcc
Q 044931 302 SDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSAT 381 (889)
Q Consensus 302 R~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~ 381 (889)
|+++ ++...... .+|+++.|+++|||+||+++|| +... .+ .++.+++++|+++|+|+||||+++|++|+.+
T Consensus 332 rd~~-vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af-~~~~-----~~-~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k 402 (1153)
T PLN03210 332 KDKH-FLRAHGID-HIYEVCLPSNELALEMFCRSAF-KKNS-----PP-DGFMELASEVALRAGNLPLGLNVLGSYLRGR 402 (1153)
T ss_pred CcHH-HHHhcCCC-eEEEecCCCHHHHHHHHHHHhc-CCCC-----Cc-HHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC
Confidence 9999 87655444 8999999999999999999999 5432 12 6789999999999999999999999999986
Q ss_pred cCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccc-cchhhhhhhccCCCCcccchhhhhhhhcccCCcCCCchhHHH
Q 044931 382 KGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPS-KLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAE 460 (889)
Q Consensus 382 ~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~-~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~~~ 460 (889)
. ..+|+.+++++.... ...+..+|++||+.|++ ..|.||+++|+||.++.++. +..|.+.+... ++
T Consensus 403 ~---~~~W~~~l~~L~~~~-~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~------~~ 469 (1153)
T PLN03210 403 D---KEDWMDMLPRLRNGL-DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLD------VN 469 (1153)
T ss_pred C---HHHHHHHHHHHHhCc-cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCC------ch
Confidence 4 789999999988733 36799999999999987 59999999999999876543 56677765442 34
Q ss_pred HHHHHHHHhcceeeeccccCCCcceeecChhHHHhhhhhhhhcCe-----EEEecCCCc---hhccCCccceeeeeeeeC
Q 044931 461 TYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVFSPEAAKAGF-----FHHQLESSS---AEEQQPQFAVRRLATYLG 532 (889)
Q Consensus 461 ~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~~-----~~~~~~~~~---~~~~~~~~~~r~lsl~~~ 532 (889)
..++.|+++||++... ..++|||++|++++.++.++.- ....+.... ........+++.+++...
T Consensus 470 ~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 4589999999998643 2599999999999999876531 001111000 001223456777777643
Q ss_pred CCCC--cCCCccccccccceeEeecccccCC------chhHHHHH------------HhhhhhhcccCCCceeeeEEEec
Q 044931 533 VSTN--FIPSEWSWSWHLRSYVAFDTRIQGS------PAIEIYVF------------LDKMITAKSKRGGFVLLTVLDLE 592 (889)
Q Consensus 533 ~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~------~~~~~~~~------------~~~~~~~~~~~~~l~~Lr~L~L~ 592 (889)
.... .....+..+++|+.|.+..+..... .+.++..+ .-+.++..| .+.+|+.|+++
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~ 619 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQ 619 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECc
Confidence 3322 1233467788888888765532100 00000000 000222333 44566777777
Q ss_pred CcccCCCChHHhccccCCcEEeCCCC-CCcccccccCCCCCCcEEeecCC-CcccCchhhhhccccccccccccc-CCCC
Q 044931 593 GVYKLKLSDDVIGKLLNLRYLGLRST-FIDSLPKSVGILPRLETLDVKHT-KLRFLPDSIWKAKKLQHLYLNWIH-SPID 669 (889)
Q Consensus 593 ~~~i~~l~~~~i~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~-~~~~ 669 (889)
+|.+..++. .+..+++|++|+|+++ .+..+| .++.+++|++|+|++| .+..+|..+.++++|++|++++|. ...+
T Consensus 620 ~s~l~~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 620 GSKLEKLWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred Ccccccccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 777666666 6667777777777665 355665 4666777777777776 566777777777777777777664 3445
Q ss_pred CCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecc----------cC-
Q 044931 670 GLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIE----------YG- 738 (889)
Q Consensus 670 ~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~----------l~- 738 (889)
|..+ ++++|+.|..-.+.. ....+ ...++|+.|++.++....++..+ .+++|..|.+..+. +.
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~-L~~~p---~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSR-LKSFP---DISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCC-ccccc---cccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccch
Confidence 5444 455555553222211 01111 12346667777666543333322 35566666665420 00
Q ss_pred --Ccccccccccccccc--ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCC
Q 044931 739 --EARVTTLQELYLRGS--IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGG 814 (889)
Q Consensus 739 --~~~~~~L~~L~l~~~--~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~ 814 (889)
...+++|+.|+++++ +..+|. +++.+ ++|+.|+|++|......+..+ ++++|+.|+|++|.... .++ ..
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~-~~p---~~ 844 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPS-SIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR-TFP---DI 844 (1153)
T ss_pred hhhhccccchheeCCCCCCccccCh-hhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc-ccc---cc
Confidence 022467888888874 356777 77766 888888888885443333333 78888888888665432 222 22
Q ss_pred CCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCch
Q 044931 815 FPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 815 ~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp~ 878 (889)
.++|+.|+|++|. ++.+|..++.+++|+.|++.+|++|+ .+|..+..++ +|+.+++++|+.
T Consensus 845 ~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~-~L~~L~l~~C~~ 905 (1153)
T PLN03210 845 STNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLK-HLETVDFSDCGA 905 (1153)
T ss_pred ccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCCCcC-ccCccccccc-CCCeeecCCCcc
Confidence 4678899998876 67888889999999999999999999 8998888999 999999999975
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.3e-40 Score=352.63 Aligned_cols=263 Identities=31% Similarity=0.515 Sum_probs=210.5
Q ss_pred hhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhc
Q 044931 177 LEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEML 256 (889)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 256 (889)
||+++++|.++|..... +.++|+|+||||+||||||++++++..++.+|+.++|+.++...+..+++..|++++.....
T Consensus 1 re~~~~~l~~~L~~~~~-~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSN-EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTT-SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCC-CeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999654 88999999999999999999999977789999999999999999999999999999988743
Q ss_pred cc-CCCCHHHHHHhHh--------------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeecc
Q 044931 257 VE-ASSPEEELASSLA--------------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVR 321 (889)
Q Consensus 257 ~~-~~~~~~~l~~~l~--------------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~ 321 (889)
.. ...+.+++...+. +|+...|+.+...++.. ..||+||||||+.. ++..+......++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~---~~~~kilvTTR~~~-v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSF---SSGSKILVTTRDRS-VAGSLGGTDKVIELE 155 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCH---HSS-EEEEEESCGG-GGTTHHSCEEEEECS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccccc---cccccccccccccc-ccccccccccccccc
Confidence 21 3344444444443 78888999998888877 67999999999998 887776533789999
Q ss_pred CCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcccCCChhhHHHHHHhcccC--
Q 044931 322 RLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSATKGRNFQKWSSVIERADVD-- 399 (889)
Q Consensus 322 ~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~~w~~~l~~l~~~-- 399 (889)
+|+.+||++||++.++ .... ..+ +...+.+++|+++|+|+||||+++|++|+.+.. ..+|+.+++++...
T Consensus 156 ~L~~~ea~~L~~~~~~-~~~~----~~~-~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~--~~~w~~~~~~l~~~~~ 227 (287)
T PF00931_consen 156 PLSEEEALELFKKRAG-RKES----ESP-EDLEDLAKEIVEKCGGLPLALKLIASYLRSKST--VDEWEEALEELENSLR 227 (287)
T ss_dssp S--HHHHHHHHHHHHT-SHS---------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHS--SSSHHHHHHHHHHCHT
T ss_pred cccccccccccccccc-cccc----ccc-ccccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence 9999999999999998 4431 111 556778999999999999999999999987764 78999999887761
Q ss_pred ---CCchhhHHHHHHhhccccccchhhhhhhccCCCCcccchhhhhhhhcccCCcC
Q 044931 400 ---KSDGWVSGLLALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVA 452 (889)
Q Consensus 400 ---~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~ 452 (889)
.....+..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+++||+.
T Consensus 228 ~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 228 ESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp CSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 23578999999999999999999999999999999999999999999999984
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.2e-25 Score=277.79 Aligned_cols=290 Identities=20% Similarity=0.164 Sum_probs=209.1
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc-ccccccCCCCCCcEEeecCCCcc-cCchhhhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID-SLPKSVGILPRLETLDVKHTKLR-FLPDSIWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L 659 (889)
.+++|++|+|++|.+....+..++++.+|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 5667777777777776333337777888888888777765 67777778888888888777665 567777778888888
Q ss_pred ccccccCC-CCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceeccc
Q 044931 660 YLNWIHSP-IDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEY 737 (889)
Q Consensus 660 ~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l 737 (889)
++++|... ..|..++.+++|++|. +..+...+..+..++++++|+.|.+.++.. ..++..+..+++|+.|+++++.+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLD-LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEE-CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 88777633 5666777777777773 333333344556677778888888877765 56666777778888888776622
Q ss_pred C----C--ccccccccccccccc--cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcce
Q 044931 738 G----E--ARVTTLQELYLRGSI--HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETT 809 (889)
Q Consensus 738 ~----~--~~~~~L~~L~l~~~~--~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~ 809 (889)
. . ..+++|+.|+++++. ...|. ++..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+ .++
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~-~~p 373 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-EIP 373 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe-eCC
Confidence 2 1 456678888887643 34555 66666 888888888888777777778888888888888776654 334
Q ss_pred eCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 810 CSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 810 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
..+..+++|+.|++++|.....+|..++.+++|+.|++++ +++++.+|..+..++ +|+.|+++++.
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~-~L~~L~Ls~N~ 439 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD-NSFSGELPSEFTKLP-LVYFLDISNNN 439 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC-CEeeeECChhHhcCC-CCCEEECcCCc
Confidence 4556678888888888876666777788889999999988 556667888888888 99999998754
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=4.7e-25 Score=276.28 Aligned_cols=334 Identities=23% Similarity=0.197 Sum_probs=264.3
Q ss_pred cceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCCh
Q 044931 522 FAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSD 601 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~ 601 (889)
.+.|++.+..+......+ ...+++|++|++++|.+.+. ++..+ . .+++|++|+|++|.+....+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~------------~p~~~-~-~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGE------------IPNDI-G-SFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred CCCCEEECcCCccccccC--ccccCCCCEEECcCCccccc------------CChHH-h-cCCCCCEEECccCcccccCC
Confidence 456777776444433222 24567888888888776432 22333 4 88999999999999874433
Q ss_pred HHhccccCCcEEeCCCCCCc-ccccccCCCCCCcEEeecCCCcc-cCchhhhhcccccccccccccC-CCCCCCcccccc
Q 044931 602 DVIGKLLNLRYLGLRSTFID-SLPKSVGILPRLETLDVKHTKLR-FLPDSIWKAKKLQHLYLNWIHS-PIDGLSLSSLNN 678 (889)
Q Consensus 602 ~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~-~~~~~~i~~l~~ 678 (889)
..|+++++|++|+|++|.+. .+|..++++++|++|+|++|++. .+|..++++++|++|++++|.. ...|..++.+++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 38999999999999999877 68899999999999999999877 6888999999999999998874 367778888888
Q ss_pred cccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccC-----C-cccccccccccc
Q 044931 679 LQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYG-----E-ARVTTLQELYLR 751 (889)
Q Consensus 679 L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~-----~-~~~~~L~~L~l~ 751 (889)
|++|. +..+...+..+..+.++++|+.|+++++.. ..++..+..+++|+.|++.++.+. . ..+++|+.|+++
T Consensus 262 L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 262 LQYLF-LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCEEE-CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 88884 333333444566788899999999998876 677778888999999999876332 1 567889999998
Q ss_pred ccc--cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCC
Q 044931 752 GSI--HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSL 829 (889)
Q Consensus 752 ~~~--~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 829 (889)
++. ..+|. +++.+ ++|+.|++++|.+.+..+..+..+++|+.|++.+|.+.+ .++..+..+++|+.|++++|...
T Consensus 341 ~n~l~~~~p~-~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 341 SNKFSGEIPK-NLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG-EIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred CCCCcCcCCh-HHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc-cCCHHHhCCCCCCEEECcCCEee
Confidence 754 35676 77777 999999999999888888888999999999999887765 44556778999999999999866
Q ss_pred cceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 830 EEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 830 ~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
...|..+..+++|+.|++++ |++.+.+|..+..++ +|+.|++++|.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L~L~~n~ 463 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISN-NNLQGRINSRKWDMP-SLQMLSLARNK 463 (968)
T ss_pred eECChhHhcCCCCCEEECcC-CcccCccChhhccCC-CCcEEECcCce
Confidence 67788888999999999998 778867888888898 99999999875
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.6e-27 Score=250.36 Aligned_cols=318 Identities=20% Similarity=0.157 Sum_probs=208.1
Q ss_pred CCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccC--CCChHHhccccCCcEEeC
Q 044931 538 IPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKL--KLSDDVIGKLLNLRYLGL 615 (889)
Q Consensus 538 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~l~~~~i~~l~~Lr~L~L 615 (889)
.|.++..+.+|.+|.+.+|.... +...+ + .++.||.+++..|++. ++|+ .|-.|..|..|||
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~~------------vhGEL--s-~Lp~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLIS------------VHGEL--S-DLPRLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDL 110 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhHh------------hhhhh--c-cchhhHHHhhhccccccCCCCc-hhcccccceeeec
Confidence 44455555555555555554421 12222 2 5555555555555544 4555 5555555555555
Q ss_pred CCCCCcccccccCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccCCCCCCCcccccccccccccccccCCCcc
Q 044931 616 RSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFR 694 (889)
Q Consensus 616 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~ 694 (889)
++|.+++.|..+.+-+|+-+|+|++|+|..+|.. +.+|+.|-.|+|++|....+|+.+..|.+||+| .++.+......
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL-~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL-KLSNNPLNHFQ 189 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh-hcCCChhhHHH
Confidence 5555555555555555555555555555555543 344555555555555555555555555555555 23333333334
Q ss_pred ccCCCCCCCCCeeecccCch--hhHHHHHhhhcccccccceecccCC-----cccccccccccccc-ccccccccccccC
Q 044931 695 QSDSTKWPRLIKLGVKCDSQ--MAIEFIINLLVCARTDGLVEIEYGE-----ARVTTLQELYLRGS-IHSFFDYGIEWNY 766 (889)
Q Consensus 695 ~~~l~~l~~L~~L~l~~~~~--~~l~~~l~~l~~L~~L~l~~~~l~~-----~~~~~L~~L~l~~~-~~~~p~~~~~~~~ 766 (889)
+..+..|+.|..|.+++... ..++.++..+.+|..++++.+.+.. ..+++|+.|+|+|+ ++.+.. ..+..
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W- 267 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM-TEGEW- 267 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec-cHHHH-
Confidence 44455555555555555543 5555566666666666666553332 34567777777764 344443 45555
Q ss_pred CCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceee
Q 044931 767 PNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELE 846 (889)
Q Consensus 767 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~ 846 (889)
.+|..|+++.|+++ ..|..+.+|++|+.|.+.+|.+.-+.+|..++.+.+|+.+...+|. ++-.|..+..|+.|+.|.
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhc
Confidence 88999999999986 6778889999999999998888888899999999999999999875 888899999999999999
Q ss_pred cccccCCCCCCCcchhhhhcccceEEeccCchh
Q 044931 847 IRSCNNLKPPQPQGLQNLTNTLKEFVLTNMPST 879 (889)
Q Consensus 847 l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp~~ 879 (889)
+. ||.|- .+|.+|.-|+ .|+.|++.+.|.-
T Consensus 346 L~-~NrLi-TLPeaIHlL~-~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 346 LD-HNRLI-TLPEAIHLLP-DLKVLDLRENPNL 375 (1255)
T ss_pred cc-cccee-echhhhhhcC-CcceeeccCCcCc
Confidence 96 59998 8999998888 9999999997753
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=5.4e-25 Score=233.97 Aligned_cols=314 Identities=19% Similarity=0.125 Sum_probs=257.7
Q ss_pred ccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC
Q 044931 521 QFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS 600 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~ 600 (889)
..+..|+++..+.... ...+++.++.||++++..|...... +++.+| .+..|.+||||+|++...|
T Consensus 54 lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsG----------iP~diF---~l~dLt~lDLShNqL~EvP 119 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSG----------IPTDIF---RLKDLTILDLSHNQLREVP 119 (1255)
T ss_pred HhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCC----------CCchhc---ccccceeeecchhhhhhcc
Confidence 3467788887555442 3556888999999999999875322 788899 9999999999999999999
Q ss_pred hHHhccccCCcEEeCCCCCCcccccc-cCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCC-CCCcccccc
Q 044931 601 DDVIGKLLNLRYLGLRSTFIDSLPKS-VGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPID-GLSLSSLNN 678 (889)
Q Consensus 601 ~~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-~~~i~~l~~ 678 (889)
. .+..-+++-+|+|++|.|.++|.+ +-+|.-|-.|||++|++..+|+.+..|.+|+.|.|++|..... -..+..+++
T Consensus 120 ~-~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 120 T-NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS 198 (1255)
T ss_pred h-hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence 9 899999999999999999999965 4589999999999999999999999999999999999763321 122334455
Q ss_pred cccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecc---cCC--ccccccccccccc-
Q 044931 679 LQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIE---YGE--ARVTTLQELYLRG- 752 (889)
Q Consensus 679 L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~---l~~--~~~~~L~~L~l~~- 752 (889)
|+.|+.-+..+.....+..+..|.+|+.++++.+....++..+-++.+|+.|+++++. +.. ....+|++|+++.
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 5555433333333456778889999999999998878888999999999999999873 332 4456899999985
Q ss_pred cccccccccccccCCCccEEEeeccCCCCC-CchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcc
Q 044931 753 SIHSFFDYGIEWNYPNLKILTLSMSRLVYD-PMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEE 831 (889)
Q Consensus 753 ~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 831 (889)
.+..+|. .+..+ ++|+.|.+.+|+++-+ .|..+|+|.+|+.+...+|.+ +..|.++..+++|+.|.|+.|. +-.
T Consensus 279 QLt~LP~-avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~Nr-LiT 353 (1255)
T KOG0444|consen 279 QLTVLPD-AVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNR-LIT 353 (1255)
T ss_pred hhccchH-HHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccc-eee
Confidence 5688998 88777 9999999999998755 456799999999999997765 4567788899999999999887 677
Q ss_pred eecccCcccccceeecccccCCC
Q 044931 832 WTVEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 832 ~~~~~~~lp~L~~L~l~~C~~L~ 854 (889)
+|..+.-+|.|+.|+++..++|.
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCcc
Confidence 89999999999999999988888
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=3.7e-23 Score=219.15 Aligned_cols=287 Identities=22% Similarity=0.223 Sum_probs=160.4
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCchh-hhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 659 (889)
-++.||+||||.|.|+.++..+|..=.++++|+|++|.|+.+- ..|..|.+|-+|.|++|.++.+|.- +.+|++|+.|
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 5566777777777777666556666667777777777777664 4566677777777777777777754 4447777777
Q ss_pred ccccccCCCC-CCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceec--
Q 044931 660 YLNWIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEI-- 735 (889)
Q Consensus 660 ~l~~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~-- 735 (889)
+|..|..... ...+..|.+|+.|+ +.-++.....-..+-.|.+++.|++..+.. ..-..++-+++.|+.|+++.+
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlk-lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLK-LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhh-hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 7777665443 23455555655552 111111111112244566666777766665 444455666666666666654
Q ss_pred ---ccCC-ccccccccccccc-cccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCC--cc
Q 044931 736 ---EYGE-ARVTTLQELYLRG-SIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGE--ET 808 (889)
Q Consensus 736 ---~l~~-~~~~~L~~L~l~~-~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~--~~ 808 (889)
..+. +.+++|+.|+|+. .+.+++...+..+ +.|+.|.|+.|.+.-..-..+..+.+|+.|+|++|.+... +-
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 2222 4455666666654 3455555344444 6666666666655433334455566666666665544321 11
Q ss_pred eeCCCCCCcccEEEccccCCCcceec-ccCcccccceeecccccCCCCCCCcchhhhhcccceEEec
Q 044931 809 TCSSGGFPQLRVLKLWNLFSLEEWTV-EKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLT 874 (889)
Q Consensus 809 ~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~ 874 (889)
...+.++|+|+.|.+.+|. ++.++. .+..+++|+.|++.+ |-+...-|..+.++ .|++|.+.
T Consensus 385 a~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m--~Lk~Lv~n 447 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPM--ELKELVMN 447 (873)
T ss_pred hhhhccchhhhheeecCce-eeecchhhhccCcccceecCCC-Ccceeecccccccc--hhhhhhhc
Confidence 1223446666666666654 455543 345566666666665 55552224444444 25555443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.4e-22 Score=213.15 Aligned_cols=337 Identities=18% Similarity=0.105 Sum_probs=262.8
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+...+.|.+..+...+..+..+.++++|+.+.+..|.... +|.+. . ...+|+.|+|.+|.|..+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-------------IP~f~-~-~sghl~~L~L~~N~I~sv 140 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-------------IPRFG-H-ESGHLEKLDLRHNLISSV 140 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-------------ccccc-c-cccceeEEeeeccccccc
Confidence 45567788888677776667778999999999999998863 33333 3 667799999999999988
Q ss_pred ChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCCCCCC-cccc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPIDGLS-LSSL 676 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~-i~~l 676 (889)
....+..++-||.|||+.|.|.++| +++..=.+++.|+|++|.|+.+-. .+..+.+|-.|.|+.|....+|.. +.+|
T Consensus 141 ~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 141 TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhc
Confidence 8889999999999999999999998 567777899999999999998864 578899999999999997766654 4457
Q ss_pred cccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceeccc-----CC-cccccccccc
Q 044931 677 NNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEY-----GE-ARVTTLQELY 749 (889)
Q Consensus 677 ~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l-----~~-~~~~~L~~L~ 749 (889)
..|+.| .+.-+.........+..|++|+.|.+..+.. .--...+-.+.+++.|++..+.+ +. ..++.|+.|+
T Consensus 221 ~~L~~L-dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 221 PKLESL-DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred chhhhh-hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 777777 3333332222334567888999998888775 43344556677888888886622 22 5688999999
Q ss_pred cccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCC
Q 044931 750 LRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFS 828 (889)
Q Consensus 750 l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 828 (889)
++.+ +.++.. .-..++++|+.|+|++|.++......+..|..|+.|.|++|++.. .-.+.+.++.+|+.|+|..|..
T Consensus 300 lS~NaI~rih~-d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 300 LSYNAIQRIHI-DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred cchhhhheeec-chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeE
Confidence 9864 455433 333467999999999999998888999999999999999888754 2334667889999999999873
Q ss_pred Ccce---ecccCcccccceeecccccCCCCCCCc-chhhhhcccceEEeccCc
Q 044931 829 LEEW---TVEKGAMPRLRELEIRSCNNLKPPQPQ-GLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 829 l~~~---~~~~~~lp~L~~L~l~~C~~L~~~lp~-~l~~l~~~L~~L~l~~cp 877 (889)
--.+ ...+..||+|++|.+.+ |+++ ++|. .+..++ +|++|+|.+.+
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~g-Nqlk-~I~krAfsgl~-~LE~LdL~~Na 427 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTG-NQLK-SIPKRAFSGLE-ALEHLDLGDNA 427 (873)
T ss_pred EEEEecchhhhccchhhhheeecC-ceee-ecchhhhccCc-ccceecCCCCc
Confidence 2112 22355699999999999 9999 8886 678899 99999999965
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.4e-22 Score=205.93 Aligned_cols=313 Identities=21% Similarity=0.151 Sum_probs=194.0
Q ss_pred CCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCC
Q 044931 539 PSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRST 618 (889)
Q Consensus 539 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~ 618 (889)
|..+..+.++..+.+.+|.... .++... .++.|+.||+..|.++.+|+ .++.|..|..|+|+.|
T Consensus 153 p~~~~~~~~l~~l~~~~n~l~~------------l~~~~i---~m~~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNKLKA------------LPENHI---AMKRLKHLDCNSNLLETLPP-ELGGLESLELLYLRRN 216 (565)
T ss_pred chHHHHHHHHHHhhccccchhh------------CCHHHH---HHHHHHhcccchhhhhcCCh-hhcchhhhHHHHhhhc
Confidence 3344445555555555555432 223333 56677777777777777777 7777777777777777
Q ss_pred CCcccccccCCCCCCcEEeecCCCcccCchhhh-hcccccccccccccCCCCCCCcccccccccccccccccCCCccccC
Q 044931 619 FIDSLPKSVGILPRLETLDVKHTKLRFLPDSIW-KAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSD 697 (889)
Q Consensus 619 ~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~ 697 (889)
+|..+| +|..+..|..|.+..|.|+.+|.++. +|.+|..||+..|.....|.++..+.+|..|. +..+. ....+.+
T Consensus 217 ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD-lSNN~-is~Lp~s 293 (565)
T KOG0472|consen 217 KIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD-LSNND-ISSLPYS 293 (565)
T ss_pred ccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc-ccCCc-cccCCcc
Confidence 777777 77777777777777777777777766 68888888888888888888888887777763 33332 2446778
Q ss_pred CCCCCCCCeeecccCchhhHHHHHhh------hcccccc----cceec--------ccCC------ccccccccccc---
Q 044931 698 STKWPRLIKLGVKCDSQMAIEFIINL------LVCARTD----GLVEI--------EYGE------ARVTTLQELYL--- 750 (889)
Q Consensus 698 l~~l~~L~~L~l~~~~~~~l~~~l~~------l~~L~~L----~l~~~--------~l~~------~~~~~L~~L~l--- 750 (889)
++++ +|+.|.+.++....+-..+-. ++.|++- .++.. ..+. ....+.+.|.+
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 8888 888998888763111111111 1111110 00000 0000 00111222222
Q ss_pred -----------------------------------------------cccccccccccccccCCCccEEEeeccCCCCCC
Q 044931 751 -----------------------------------------------RGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDP 783 (889)
Q Consensus 751 -----------------------------------------------~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~ 783 (889)
+.+..+++...+..+ ++|+.|+|++|.+. +.
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l-~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL-QKLTFLDLSNNLLN-DL 450 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh-hcceeeecccchhh-hc
Confidence 222222222133334 66777777766654 45
Q ss_pred chhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecc-cCcccccceeecccccCCCCCCCcchh
Q 044931 784 MPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVE-KGAMPRLRELEIRSCNNLKPPQPQGLQ 862 (889)
Q Consensus 784 ~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~lp~L~~L~l~~C~~L~~~lp~~l~ 862 (889)
|..++.+..|+.|+++.|+|. ..|........|+.+..++|. +..++.. +++|.+|.+|++.+ |.+. .+|.+++
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~n-Ndlq-~IPp~Lg 525 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQN-NDLQ-QIPPILG 525 (565)
T ss_pred chhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCC-Cchh-hCChhhc
Confidence 556666666777777766552 233334444455555555554 5555443 78899999999999 9999 9999999
Q ss_pred hhhcccceEEeccCchh
Q 044931 863 NLTNTLKEFVLTNMPST 879 (889)
Q Consensus 863 ~l~~~L~~L~l~~cp~~ 879 (889)
++. +|++|++.|.|-.
T Consensus 526 nmt-nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 526 NMT-NLRHLELDGNPFR 541 (565)
T ss_pred ccc-ceeEEEecCCccC
Confidence 999 9999999998743
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=3.2e-18 Score=214.62 Aligned_cols=300 Identities=19% Similarity=0.161 Sum_probs=219.0
Q ss_pred ccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcc-cCCC
Q 044931 521 QFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVY-KLKL 599 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l 599 (889)
+.+.|.+.+..+... ..|..+ ...+|+.|.+.++.+.. .+..+ . .+++|+.|+|+++. +..+
T Consensus 588 p~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~------------L~~~~--~-~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 588 PPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK------------LWDGV--H-SLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred CcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc------------ccccc--c-cCCCCCEEECCCCCCcCcC
Confidence 445677777633332 333333 67889999998887642 22333 3 89999999999886 4555
Q ss_pred ChHHhccccCCcEEeCCCC-CCcccccccCCCCCCcEEeecCC-CcccCchhhhhcccccccccccccC-CCCCCCcccc
Q 044931 600 SDDVIGKLLNLRYLGLRST-FIDSLPKSVGILPRLETLDVKHT-KLRFLPDSIWKAKKLQHLYLNWIHS-PIDGLSLSSL 676 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~-~~~~~~i~~l 676 (889)
| .++.+++|++|+|++| .+..+|.++++|++|+.|++++| ++..+|..+ ++++|++|++++|.. ...|.. .
T Consensus 651 p--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~ 724 (1153)
T PLN03210 651 P--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---S 724 (1153)
T ss_pred C--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---c
Confidence 5 5889999999999987 56799999999999999999998 899999876 899999999999863 333322 3
Q ss_pred cccccccccccccCCCccccCCCCCCCCCeeecccCchhhH--------HHHHhhhcccccccceec----ccCC--ccc
Q 044931 677 NNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAI--------EFIINLLVCARTDGLVEI----EYGE--ARV 742 (889)
Q Consensus 677 ~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l--------~~~l~~l~~L~~L~l~~~----~l~~--~~~ 742 (889)
.+|+.|. +..+....++....+++|+.|.+..+....+ .......++|+.|.++++ .++. ..+
T Consensus 725 ~nL~~L~---L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L 801 (1153)
T PLN03210 725 TNISWLD---LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL 801 (1153)
T ss_pred CCcCeee---cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCC
Confidence 4555552 2222212222233577888888876432111 111223468999999876 2333 678
Q ss_pred ccccccccccc--ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccE
Q 044931 743 TTLQELYLRGS--IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRV 820 (889)
Q Consensus 743 ~~L~~L~l~~~--~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 820 (889)
++|+.|+++++ +..+|. .+ .+ ++|+.|++++|......+. ..++|+.|+|++|.+. .+|..+..+++|+.
T Consensus 802 ~~L~~L~Ls~C~~L~~LP~-~~-~L-~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~ 873 (1153)
T PLN03210 802 HKLEHLEIENCINLETLPT-GI-NL-ESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSF 873 (1153)
T ss_pred CCCCEEECCCCCCcCeeCC-CC-Cc-cccCEEECCCCCccccccc---cccccCEeECCCCCCc--cChHHHhcCCCCCE
Confidence 89999999874 467886 44 34 9999999999965433322 2468999999988774 46667889999999
Q ss_pred EEccccCCCcceecccCcccccceeecccccCCC
Q 044931 821 LKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 821 L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~ 854 (889)
|++++|+.+..+|.....+++|+.|++++|.+|+
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 9999999999999988999999999999999997
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1.3e-19 Score=184.54 Aligned_cols=266 Identities=20% Similarity=0.205 Sum_probs=176.5
Q ss_pred cccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccc
Q 044931 544 WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSL 623 (889)
Q Consensus 544 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~l 623 (889)
+-..+..+++++|.... ..+.+ . .+..|.||++++|.+..+|+ +|+.+..+..|+.++|++..+
T Consensus 43 ~qv~l~~lils~N~l~~------------l~~dl--~-nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls~l 106 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEV------------LREDL--K-NLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLSEL 106 (565)
T ss_pred hhcchhhhhhccCchhh------------ccHhh--h-cccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHhhc
Confidence 34457777777776532 22233 2 66677777777777777777 777777777777777777777
Q ss_pred ccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCC
Q 044931 624 PKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPR 703 (889)
Q Consensus 624 p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~ 703 (889)
|+.++.+.+|..|+.++|.+.++|++++.+..|..|+..+|.....|.+++.+.+|..|
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l--------------------- 165 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL--------------------- 165 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHh---------------------
Confidence 77777777777777777777777777777777777777777666667666666555544
Q ss_pred CCeeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCCCCC
Q 044931 704 LIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDP 783 (889)
Q Consensus 704 L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~ 783 (889)
.+.++...+++...-.++.|+.|+... +-+..+|. .++.+ .+|..|+|..|++. .
T Consensus 166 ----~~~~n~l~~l~~~~i~m~~L~~ld~~~-----------------N~L~tlP~-~lg~l-~~L~~LyL~~Nki~--~ 220 (565)
T KOG0472|consen 166 ----DLEGNKLKALPENHIAMKRLKHLDCNS-----------------NLLETLPP-ELGGL-ESLELLYLRRNKIR--F 220 (565)
T ss_pred ----hccccchhhCCHHHHHHHHHHhcccch-----------------hhhhcCCh-hhcch-hhhHHHHhhhcccc--c
Confidence 222222222222222244444443321 12355666 66666 77777778777765 3
Q ss_pred chhhhcCCCCCeEEeecCccCCCccee-CCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchh
Q 044931 784 MPLLEELAHLNILRLYRGAYLGEETTC-SSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQ 862 (889)
Q Consensus 784 ~~~l~~L~~L~~L~L~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~ 862 (889)
+|.++.|..|+.|+++.|.+. .++. ....+++|..|++.+|+ +++.|.++.-+.+|+.|++++ |.++ .+|..++
T Consensus 221 lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is-~Lp~sLg 295 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDIS-SLPYSLG 295 (565)
T ss_pred CCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC-Cccc-cCCcccc
Confidence 447777778888888755542 2232 23467888888888876 778888777788888888888 8888 8888888
Q ss_pred hhhcccceEEeccCch
Q 044931 863 NLTNTLKEFVLTNMPS 878 (889)
Q Consensus 863 ~l~~~L~~L~l~~cp~ 878 (889)
++. |+.|.+.|.|-
T Consensus 296 nlh--L~~L~leGNPl 309 (565)
T KOG0472|consen 296 NLH--LKFLALEGNPL 309 (565)
T ss_pred cce--eeehhhcCCch
Confidence 874 88888888773
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.8e-19 Score=201.83 Aligned_cols=177 Identities=21% Similarity=0.226 Sum_probs=100.3
Q ss_pred cCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC-----ccccccccccccc-ccccccccc--------
Q 044931 696 SDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE-----ARVTTLQELYLRG-SIHSFFDYG-------- 761 (889)
Q Consensus 696 ~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-----~~~~~L~~L~l~~-~~~~~p~~~-------- 761 (889)
..++.+.+|..+.+..+...+++..+..+.+|++|....+.++. .+..+|+.|+|.. .+..+|...
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASL 337 (1081)
T ss_pred HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHH
Confidence 44566778888888777655666666666666666665542211 3344555555542 223333210
Q ss_pred ---------------c-cccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccc
Q 044931 762 ---------------I-EWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWN 825 (889)
Q Consensus 762 ---------------~-~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 825 (889)
. ....+.|+.|++.+|.+++...+.+.+.++|+.|+|++|.+.. -+.....+++.|+.|+|++
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhccc
Confidence 0 0112456777777777777777777777777777777665532 2223345666777777777
Q ss_pred cCCCcceecc----------------------cCcccccceeecccccCCCC-CCCcchhhhhcccceEEeccCc
Q 044931 826 LFSLEEWTVE----------------------KGAMPRLRELEIRSCNNLKP-PQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 826 ~~~l~~~~~~----------------------~~~lp~L~~L~l~~C~~L~~-~lp~~l~~l~~~L~~L~l~~cp 877 (889)
|. ++.+|.. +..+|.|+.++++ ||+|+. .+|..... | +|+.|+++|.+
T Consensus 417 Nk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p-~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 417 NK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPS-P-NLKYLDLSGNT 487 (1081)
T ss_pred ch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCC-c-ccceeeccCCc
Confidence 65 4544443 4455666666665 466651 22322211 3 67777777766
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=2e-18 Score=193.46 Aligned_cols=215 Identities=22% Similarity=0.198 Sum_probs=120.0
Q ss_pred CCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeeccc
Q 044931 632 RLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKC 711 (889)
Q Consensus 632 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 711 (889)
+|+++++++++++.+|..++.+.+|..|.++.|....+|..+..+++|..|...... -...+..+..++.|+.|++..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne--l~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE--LEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh--hhhCCCcccccceeeeeeehh
Confidence 555666666666666666666666666666666666666666666666665322221 123455666788888888877
Q ss_pred CchhhHHHH-Hhh-------------------------hcccccccceec-----ccCC-ccccccccccccc-cccccc
Q 044931 712 DSQMAIEFI-INL-------------------------LVCARTDGLVEI-----EYGE-ARVTTLQELYLRG-SIHSFF 758 (889)
Q Consensus 712 ~~~~~l~~~-l~~-------------------------l~~L~~L~l~~~-----~l~~-~~~~~L~~L~l~~-~~~~~p 758 (889)
+....++.. +.. +..|+.|.+.++ .++. ..+.+|+.|+|+. .+..+|
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 653111111 000 111222222222 1222 3455566666654 345555
Q ss_pred cccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCc
Q 044931 759 DYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGA 838 (889)
Q Consensus 759 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 838 (889)
...+..+ +.|+.|+|++|+++ ..+..+.+++.|++|...+|++.. +| .+..+|+|+.++++.|. +.........
T Consensus 400 as~~~kl-e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~ 473 (1081)
T KOG0618|consen 400 ASKLRKL-EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCNN-LSEVTLPEAL 473 (1081)
T ss_pred HHHHhch-HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccch-hhhhhhhhhC
Confidence 5333333 56666666666654 334555566666666665555432 33 56678999999999876 5554322222
Q ss_pred c-cccceeecccccCCC
Q 044931 839 M-PRLRELEIRSCNNLK 854 (889)
Q Consensus 839 l-p~L~~L~l~~C~~L~ 854 (889)
- |+|+.|++++..++.
T Consensus 474 p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred CCcccceeeccCCcccc
Confidence 2 899999999844344
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=3.7e-15 Score=173.40 Aligned_cols=252 Identities=19% Similarity=0.076 Sum_probs=142.6
Q ss_pred eeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccccccc
Q 044931 586 LTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 586 Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 665 (889)
-.+|+|+++.++.+|+ .+. .+|+.|++.+|.++.+|.. +++|++|++++|+|+.+|.. .++|++|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4456666666666665 443 2566666666666666642 35666666666666666542 3455666666655
Q ss_pred CCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC--cccc
Q 044931 666 SPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE--ARVT 743 (889)
Q Consensus 666 ~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~--~~~~ 743 (889)
...+|... .+|+.| .+..+....+. ..+++|+.|+++++....++. ...+|+.|.+.++.+.. ..+.
T Consensus 274 L~~Lp~lp---~~L~~L---~Ls~N~Lt~LP--~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~LP~lp~ 342 (788)
T PRK15387 274 LTHLPALP---SGLCKL---WIFGNQLTSLP--VLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPTLPS 342 (788)
T ss_pred hhhhhhch---hhcCEE---ECcCCcccccc--ccccccceeECCCCccccCCC---CcccccccccccCcccccccccc
Confidence 44444322 223332 11111111111 123456666666654322211 11245555555554433 2234
Q ss_pred cccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEE
Q 044931 744 TLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLK 822 (889)
Q Consensus 744 ~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 822 (889)
+|+.|+++++ +..+|. .+++|+.|++++|.+.. .+ . ..++|+.|++++|.+.. ++. ..++|+.|+
T Consensus 343 ~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~-LP-~--l~~~L~~LdLs~N~Lt~--LP~---l~s~L~~Ld 408 (788)
T PRK15387 343 GLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTS-LP-A--LPSGLKELIVSGNRLTS--LPV---LPSELKELM 408 (788)
T ss_pred ccceEecCCCccCCCCC-----CCcccceehhhcccccc-Cc-c--cccccceEEecCCcccC--CCC---cccCCCEEE
Confidence 6778888764 355554 33677788888887753 22 2 13577888888776653 221 235788888
Q ss_pred ccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCch
Q 044931 823 LWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 823 l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp~ 878 (889)
+++|. +..+|.. +.+|+.|++++ |+++ .+|..+.+++ +|+.|+|+++|-
T Consensus 409 LS~N~-LssIP~l---~~~L~~L~Ls~-NqLt-~LP~sl~~L~-~L~~LdLs~N~L 457 (788)
T PRK15387 409 VSGNR-LTSLPML---PSGLLSLSVYR-NQLT-RLPESLIHLS-SETTVNLEGNPL 457 (788)
T ss_pred ccCCc-CCCCCcc---hhhhhhhhhcc-Cccc-ccChHHhhcc-CCCeEECCCCCC
Confidence 88876 5666642 34677788887 7787 7888888888 888888888663
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=143.89 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=137.7
Q ss_pred CCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCC
Q 044931 539 PSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRST 618 (889)
Q Consensus 539 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~ 618 (889)
.+.+.+++++..|.+++|.+.. .++.+. .+.+|++|++++|+++.+|. +|+.|+.||.|++.-|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~------------vppnia---~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTV------------VPPNIA---ELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMN 89 (264)
T ss_pred cccccchhhhhhhhcccCceee------------cCCcHH---HhhhhhhhhcccchhhhcCh-hhhhchhhhheecchh
Confidence 4556678899999999998864 455665 89999999999999999999 9999999999999999
Q ss_pred CCcccccccCCCCCCcEEeecCCCcc--cCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCcccc
Q 044931 619 FIDSLPKSVGILPRLETLDVKHTKLR--FLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQS 696 (889)
Q Consensus 619 ~i~~lp~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~ 696 (889)
.+..+|..|+.++-|++|||.+|++. .+|..+..|+.|+-|+++.+....+|..++++++||.|.. .-+. -...+.
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~l-rdnd-ll~lpk 167 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSL-RDND-LLSLPK 167 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEee-ccCc-hhhCcH
Confidence 99999999999999999999999776 7899999999999999999999999999999999998842 2222 234677
Q ss_pred CCCCCCCCCeeecccCch
Q 044931 697 DSTKWPRLIKLGVKCDSQ 714 (889)
Q Consensus 697 ~l~~l~~L~~L~l~~~~~ 714 (889)
+++.+++|+.|.|.+++.
T Consensus 168 eig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHHHHHHhccccee
Confidence 888999999999988864
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=3.9e-14 Score=164.99 Aligned_cols=244 Identities=18% Similarity=0.091 Sum_probs=160.0
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
++|+.|.+.+|.+... + . .+++|+.|+|++|.++.+|. . ..+|+.|+|++|.+..+|.
T Consensus 222 ~~L~~L~L~~N~Lt~L-------------P----~-lp~~Lk~LdLs~N~LtsLP~-l---p~sL~~L~Ls~N~L~~Lp~ 279 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-------------P----A-LPPELRTLEVSGNQLTSLPV-L---PPGLLELSIFSNPLTHLPA 279 (788)
T ss_pred cCCCEEEccCCcCCCC-------------C----C-CCCCCcEEEecCCccCcccC-c---ccccceeeccCCchhhhhh
Confidence 4788888888776421 1 2 45678888888888887765 2 3578888888888887775
Q ss_pred ccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCC-CCC
Q 044931 626 SVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKW-PRL 704 (889)
Q Consensus 626 ~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L 704 (889)
.. .+|+.|++++|+++.+|.. +++|+.|++++|....+|.... +|+.|. +..+.. ..+..+ .+|
T Consensus 280 lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~---Ls~N~L---~~LP~lp~~L 344 (788)
T PRK15387 280 LP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPS---ELCKLW---AYNNQL---TSLPTLPSGL 344 (788)
T ss_pred ch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcc---cccccc---cccCcc---cccccccccc
Confidence 33 5677888888888888753 4678888888877666554332 233331 221111 111112 356
Q ss_pred CeeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc-ccccccccccccCCCccEEEeeccCCCCCC
Q 044931 705 IKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDP 783 (889)
Q Consensus 705 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~ 783 (889)
+.|+++++....++ ..+++|+.|+++++ +..+|. .+.+|+.|++++|.+...
T Consensus 345 q~LdLS~N~Ls~LP---------------------~lp~~L~~L~Ls~N~L~~LP~-----l~~~L~~LdLs~N~Lt~L- 397 (788)
T PRK15387 345 QELSVSDNQLASLP---------------------TLPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSL- 397 (788)
T ss_pred ceEecCCCccCCCC---------------------CCCcccceehhhccccccCcc-----cccccceEEecCCcccCC-
Confidence 66666655321110 12346777777653 455664 336899999999988742
Q ss_pred chhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhh
Q 044931 784 MPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQN 863 (889)
Q Consensus 784 ~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~ 863 (889)
+. ..++|+.|++++|.+.. ++. .+.+|+.|++++|. +..+|..+..+++|+.|++++ |.|++..|..+.+
T Consensus 398 P~---l~s~L~~LdLS~N~Lss--IP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~-N~Ls~~~~~~L~~ 467 (788)
T PRK15387 398 PV---LPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEG-NPLSERTLQALRE 467 (788)
T ss_pred CC---cccCCCEEEccCCcCCC--CCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCC-CCCCchHHHHHHH
Confidence 22 23689999999887654 332 24578899999887 678888888999999999998 8888666655543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=1.1e-13 Score=162.38 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=76.1
Q ss_pred cccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEE
Q 044931 744 TLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLK 822 (889)
Q Consensus 744 ~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 822 (889)
+|+.|+++++ +..+|. .+ +++|+.|++++|.++. .+..+ .++|+.|+|++|.+.. ++..+ .++|+.|+
T Consensus 305 sL~~L~Ls~N~Lt~LP~-~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~Ld 373 (754)
T PRK15370 305 GITHLNVQSNSLTALPE-TL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPETL--PPTITTLD 373 (754)
T ss_pred hHHHHHhcCCccccCCc-cc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChhh--cCCcCEEE
Confidence 4556666543 344554 22 3678888888887764 33333 3688888888776642 23222 36788888
Q ss_pred ccccCCCcceecccCcccccceeecccccCCCCCCCcchhhh----hcccceEEeccCchh
Q 044931 823 LWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNL----TNTLKEFVLTNMPST 879 (889)
Q Consensus 823 l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l----~~~L~~L~l~~cp~~ 879 (889)
|++|. +..+|..+. +.|+.|++++ |++. .+|..+.++ + ++..|++.++|-+
T Consensus 374 Ls~N~-Lt~LP~~l~--~sL~~LdLs~-N~L~-~LP~sl~~~~~~~~-~l~~L~L~~Npls 428 (754)
T PRK15370 374 VSRNA-LTNLPENLP--AALQIMQASR-NNLV-RLPESLPHFRGEGP-QPTRIIVEYNPFS 428 (754)
T ss_pred CCCCc-CCCCCHhHH--HHHHHHhhcc-CCcc-cCchhHHHHhhcCC-CccEEEeeCCCcc
Confidence 88876 566665432 4688888888 7787 777765543 5 6778888887743
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.46 E-value=9.3e-14 Score=165.52 Aligned_cols=301 Identities=21% Similarity=0.159 Sum_probs=201.2
Q ss_pred CccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcc--cCCCChHHhccccCCcEEeCCC
Q 044931 540 SEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVY--KLKLSDDVIGKLLNLRYLGLRS 617 (889)
Q Consensus 540 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~l~~~~i~~l~~Lr~L~L~~ 617 (889)
+........|.+.+.+|.+.. ...- . .++.|+.|-+.+|. +..++...|..|++||+|||++
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~-------------~~~~--~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEH-------------IAGS--S-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred ccccchhheeEEEEeccchhh-------------ccCC--C-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC
Confidence 334455788999888887642 2222 2 66789999999996 6777776799999999999997
Q ss_pred C-CCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCC-CCCCCcccccccccccccccc-cCCCcc
Q 044931 618 T-FIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSP-IDGLSLSSLNNLQTLWGLSIE-SYTPFR 694 (889)
Q Consensus 618 ~-~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~-~~~~~~ 694 (889)
| .+..||.+|++|.+|++|+++++.++.+|.++.+|.+|.+|++..+... ..|.....|++|++|..+... ..+...
T Consensus 581 ~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~ 660 (889)
T KOG4658|consen 581 NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLL 660 (889)
T ss_pred CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhh
Confidence 7 6779999999999999999999999999999999999999999987643 334445559999999766554 334556
Q ss_pred ccCCCCCCCCCeeecccCchhhHHHHHhhhcccc----cccceec----ccCC-cccccccccccccccc-cccccccc-
Q 044931 695 QSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCAR----TDGLVEI----EYGE-ARVTTLQELYLRGSIH-SFFDYGIE- 763 (889)
Q Consensus 695 ~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~----~L~l~~~----~l~~-~~~~~L~~L~l~~~~~-~~p~~~~~- 763 (889)
..++.++.+|+.|.+...+. .+...+..+..|. .+.+.++ .... ..+.+|+.|.+.++-. .....|..
T Consensus 661 l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~ 739 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES 739 (889)
T ss_pred HHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc
Confidence 67778888888887765543 2222233333333 3332222 1222 5677888888876432 11111221
Q ss_pred ----ccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeC---------CCCCCcccEE-EccccCCC
Q 044931 764 ----WNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCS---------SGGFPQLRVL-KLWNLFSL 829 (889)
Q Consensus 764 ----~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~---------~~~~~~L~~L-~l~~~~~l 829 (889)
..++++..+.+.+|... ..+.+..-.|+|+.|.+..+....+.++.. ...|.+++.+ .+.+.+.+
T Consensus 740 ~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l 818 (889)
T KOG4658|consen 740 LIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGL 818 (889)
T ss_pred cchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCC
Confidence 10256666666676543 234445567899999998776655433211 2235556666 35555555
Q ss_pred cceecccCcccccceeecccccCCCCCCCc
Q 044931 830 EEWTVEKGAMPRLRELEIRSCNNLKPPQPQ 859 (889)
Q Consensus 830 ~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~ 859 (889)
..+-...-.+++|+.+.+..||++. .+|.
T Consensus 819 ~~i~~~~l~~~~l~~~~ve~~p~l~-~~P~ 847 (889)
T KOG4658|consen 819 PQLYWLPLSFLKLEELIVEECPKLG-KLPL 847 (889)
T ss_pred ceeEecccCccchhheehhcCcccc-cCcc
Confidence 5554444456678888998899888 7764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=3.3e-14 Score=128.88 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=130.4
Q ss_pred hhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhh
Q 044931 573 MITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWK 652 (889)
Q Consensus 573 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~ 652 (889)
.++.+| .+.+...|-|++|.++..|+ .|..+.+|+.|++++|.|+++|.+|+.+++|+.|++.-|.+..+|.+++.
T Consensus 25 ~~~gLf---~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 25 ELPGLF---NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hccccc---chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 456667 88899999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccc--CCCCCCCcccccccccccccccccCC-CccccCCCCCCCCCeeecccCchhhHHHHHhhhccccc
Q 044931 653 AKKLQHLYLNWIH--SPIDGLSLSSLNNLQTLWGLSIESYT-PFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCART 729 (889)
Q Consensus 653 L~~L~~L~l~~~~--~~~~~~~i~~l~~L~~L~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~ 729 (889)
++.|+.|+++.+. ...+|..+..++.|+.| ..+.++ ...+.+++++++|+.|.+..+..-.++..++.+..|+.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlral---yl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRAL---YLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHH---HhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 9999999998876 34566666655555544 444433 34678899999999999988876677777888877777
Q ss_pred ccceec
Q 044931 730 DGLVEI 735 (889)
Q Consensus 730 L~l~~~ 735 (889)
|.+.++
T Consensus 178 lhiqgn 183 (264)
T KOG0617|consen 178 LHIQGN 183 (264)
T ss_pred Hhcccc
Confidence 777654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.1e-12 Score=154.20 Aligned_cols=225 Identities=16% Similarity=0.111 Sum_probs=123.5
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
++|+.|++.+|.+... +.. -+++|+.|++++|.++.+|. .+. .+|+.|+|++|.+..+|.
T Consensus 199 ~~L~~L~Ls~N~LtsL------------P~~-----l~~nL~~L~Ls~N~LtsLP~-~l~--~~L~~L~Ls~N~L~~LP~ 258 (754)
T PRK15370 199 EQITTLILDNNELKSL------------PEN-----LQGNIKTLYANSNQLTSIPA-TLP--DTIQEMELSINRITELPE 258 (754)
T ss_pred cCCcEEEecCCCCCcC------------Chh-----hccCCCEEECCCCccccCCh-hhh--ccccEEECcCCccCcCCh
Confidence 4677777777766431 111 22467777888777777776 443 367778888777777776
Q ss_pred ccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCC
Q 044931 626 SVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLI 705 (889)
Q Consensus 626 ~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~ 705 (889)
.+. .+|++|++++|+++.+|..+. ++|++|++++|....+|..+. .+|+.|. +..+.... .+..+ .++|+
T Consensus 259 ~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~-Ls~N~Lt~-LP~~l--~~sL~ 328 (754)
T PRK15370 259 RLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLN-VQSNSLTA-LPETL--PPGLK 328 (754)
T ss_pred hHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHH-hcCCcccc-CCccc--cccce
Confidence 654 467778887777777776553 467777777776555554332 2333331 11111110 11111 23555
Q ss_pred eeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc-ccccccccccccCCCccEEEeeccCCCCCCc
Q 044931 706 KLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPM 784 (889)
Q Consensus 706 ~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~ 784 (889)
.|.+.++....++.. -+++|+.|+++++ +..+|. .+ +++|+.|+|++|.+.. .+
T Consensus 329 ~L~Ls~N~Lt~LP~~--------------------l~~sL~~L~Ls~N~L~~LP~-~l---p~~L~~LdLs~N~Lt~-LP 383 (754)
T PRK15370 329 TLEAGENALTSLPAS--------------------LPPELQVLDVSKNQITVLPE-TL---PPTITTLDVSRNALTN-LP 383 (754)
T ss_pred eccccCCccccCChh--------------------hcCcccEEECCCCCCCcCCh-hh---cCCcCEEECCCCcCCC-CC
Confidence 555555432111111 1245666666543 344554 22 2567777777777653 33
Q ss_pred hhhhcCCCCCeEEeecCccCCC--cceeCCCCCCcccEEEccccC
Q 044931 785 PLLEELAHLNILRLYRGAYLGE--ETTCSSGGFPQLRVLKLWNLF 827 (889)
Q Consensus 785 ~~l~~L~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 827 (889)
+.+. ++|+.|++++|.+... .++.....+|++..|++.+|+
T Consensus 384 ~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 384 ENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 3332 2566777776665421 112223345667777777766
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=3.8e-13 Score=137.83 Aligned_cols=122 Identities=20% Similarity=0.150 Sum_probs=94.9
Q ss_pred ccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCC-CCCccccc
Q 044931 547 HLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRS-TFIDSLPK 625 (889)
Q Consensus 547 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~-~~i~~lp~ 625 (889)
....+.+..|.+.. +++..| + .++.||.|||++|.|+.+-++.|.++..|-.|-+.+ |+|+.+|+
T Consensus 68 ~tveirLdqN~I~~------------iP~~aF-~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS------------IPPGAF-K-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cceEEEeccCCccc------------CChhhc-c-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 45667777777753 666777 6 899999999999999988887899998888877755 88999984
Q ss_pred -ccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCCCCC-Ccccccccccc
Q 044931 626 -SVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPIDGL-SLSSLNNLQTL 682 (889)
Q Consensus 626 -~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L 682 (889)
.|++|..|+-|.+.-|++..++. .+..|++|+.|.+..+....++. .+..+.+++++
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 57888899999888888887654 57889999999888876555554 45666666666
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=3.8e-13 Score=137.88 Aligned_cols=262 Identities=19% Similarity=0.088 Sum_probs=149.1
Q ss_pred eeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccc-ccccCCCCCCcEEeecC-CCcccCchh-hhhccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSL-PKSVGILPRLETLDVKH-TKLRFLPDS-IWKAKKLQHLYL 661 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~-~~l~~lp~~-i~~L~~L~~L~l 661 (889)
.-..++|.-|.|+.+|+..|+.+++||.|||++|.|+.+ |..|..|.+|-+|-+.+ |+|+.+|.+ +.+|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345689999999999999999999999999999999976 78899999998887777 799999975 788999999999
Q ss_pred ccccCCCCC-CCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-------------hhHHHHHhhhccc
Q 044931 662 NWIHSPIDG-LSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-------------MAIEFIINLLVCA 727 (889)
Q Consensus 662 ~~~~~~~~~-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------------~~l~~~l~~l~~L 727 (889)
+-|.....+ ..+..|++|..|+.++... ....-..+..+..++.+.+..+.. ...+.........
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 887754433 3466677776665444322 111222455566666665544330 0000111111111
Q ss_pred ccccceec---ccCC-ccccccccc--ccc--ccc-cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEe
Q 044931 728 RTDGLVEI---EYGE-ARVTTLQEL--YLR--GSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRL 798 (889)
Q Consensus 728 ~~L~l~~~---~l~~-~~~~~L~~L--~l~--~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L 798 (889)
....+... .... .....++.+ .+. ... ...|...|..+ ++|++|+|++|+++.....++..+.+++.|.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 11111110 0011 000011111 011 111 12232223333 66666666666666555556666666666666
Q ss_pred ecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeeccc
Q 044931 799 YRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRS 849 (889)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~ 849 (889)
..|.+... -...+.++..|+.|+|.+|....--|..+..+.+|.+|.+-.
T Consensus 306 ~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 306 TRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred CcchHHHH-HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 65544221 112344555666666666654333344555555566665544
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=3.8e-12 Score=138.79 Aligned_cols=260 Identities=20% Similarity=0.144 Sum_probs=144.2
Q ss_pred CceeeeEEEecCcccCC-----CChHHhccccCCcEEeCCCCCCcc-------cccccCCCCCCcEEeecCCCcc-cCch
Q 044931 582 GFVLLTVLDLEGVYKLK-----LSDDVIGKLLNLRYLGLRSTFIDS-------LPKSVGILPRLETLDVKHTKLR-FLPD 648 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~-----l~~~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~l~-~lp~ 648 (889)
.+..|++|++++|.++. ++. .+...++|++|+++++.+.. ++..+.++++|+.|++++|.+. ..+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 56668888888888742 333 55667778888888776552 3345667778888888888766 3445
Q ss_pred hhhhccc---ccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCC-CCCCeeecccCch-----hhHHH
Q 044931 649 SIWKAKK---LQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKW-PRLIKLGVKCDSQ-----MAIEF 719 (889)
Q Consensus 649 ~i~~L~~---L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~-----~~l~~ 719 (889)
.+..+.+ |++|++++|..... ... .....+..+ ++|+.|++.++.. ..+..
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~--~~~------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDR--GLR------------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchH--HHH------------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 5555555 88888877542210 000 011112233 5677777776653 12333
Q ss_pred HHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCCCCCc----hhhhcCCCCCe
Q 044931 720 IINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPM----PLLEELAHLNI 795 (889)
Q Consensus 720 ~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~L~~L~~ 795 (889)
.+..+++|+.|++.++.+.. .....++. .+..+ ++|+.|++++|.+.+... ..+..+++|++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~------------~~~~~l~~-~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 160 ALRANRDLKELNLANNGIGD------------AGIRALAE-GLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HHHhCCCcCEEECcCCCCch------------HHHHHHHH-HHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 33444444444443221110 00011111 22223 688888888887754332 23456778888
Q ss_pred EEeecCccCCCcceeCCC----CCCcccEEEccccCCC----cceecccCcccccceeecccccCCCCC----CCcchhh
Q 044931 796 LRLYRGAYLGEETTCSSG----GFPQLRVLKLWNLFSL----EEWTVEKGAMPRLRELEIRSCNNLKPP----QPQGLQN 863 (889)
Q Consensus 796 L~L~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~l----~~~~~~~~~lp~L~~L~l~~C~~L~~~----lp~~l~~ 863 (889)
|++++|.+....+..... ..++|+.|++++|... ..+......+++|+.|++++ |.+... +...+..
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLE 304 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhh
Confidence 888877665422211111 2478888888888632 11233344567888888888 666621 2222333
Q ss_pred hhcccceEEeccCc
Q 044931 864 LTNTLKEFVLTNMP 877 (889)
Q Consensus 864 l~~~L~~L~l~~cp 877 (889)
..+.|++|++.+.|
T Consensus 305 ~~~~~~~~~~~~~~ 318 (319)
T cd00116 305 PGNELESLWVKDDS 318 (319)
T ss_pred cCCchhhcccCCCC
Confidence 31267777776644
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=1.9e-11 Score=133.27 Aligned_cols=264 Identities=15% Similarity=-0.005 Sum_probs=141.0
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC------hHHhccccCCcEEeC
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS------DDVIGKLLNLRYLGL 615 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~------~~~i~~l~~Lr~L~L 615 (889)
+..+.+|+.|.+.++.+...... .+.... . ..+.|+.|+++++.+...+ ...+..+.+|++|++
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~--------~i~~~l-~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAK--------ALASAL-R-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHH--------HHHHHH-h-hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 44556688888888876421111 223233 3 6677888888888765311 125677888999999
Q ss_pred CCCCCc-ccccccCCCCC---CcEEeecCCCccc-----Cchhhhhc-ccccccccccccCCCCCCCccccccccccccc
Q 044931 616 RSTFID-SLPKSVGILPR---LETLDVKHTKLRF-----LPDSIWKA-KKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGL 685 (889)
Q Consensus 616 ~~~~i~-~lp~~i~~L~~---L~~L~L~~~~l~~-----lp~~i~~L-~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~ 685 (889)
++|.+. ..+..+..+.+ |+.|++++|++.. ++..+..+ ++|+.|++++|..... ...
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--~~~----------- 155 (319)
T cd00116 89 SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA--SCE----------- 155 (319)
T ss_pred cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch--HHH-----------
Confidence 888776 34444444444 8899998887762 33445566 7888888887653310 000
Q ss_pred ccccCCCccccCCCCCCCCCeeecccCch-h----hHHHHHhhhcccccccceecccCCccccccccccccccccccccc
Q 044931 686 SIESYTPFRQSDSTKWPRLIKLGVKCDSQ-M----AIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDY 760 (889)
Q Consensus 686 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~----~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~ 760 (889)
.....+..+++|+.|++.++.. . .+...+...++|+.|+++++.+.. . ....++.
T Consensus 156 -------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~--------~----~~~~l~~- 215 (319)
T cd00116 156 -------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD--------E----GASALAE- 215 (319)
T ss_pred -------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh--------H----HHHHHHH-
Confidence 0011123344555566655543 1 122223333344444443221110 0 0011121
Q ss_pred cccccCCCccEEEeeccCCCCCCchhhh-c----CCCCCeEEeecCccCCCc---ceeCCCCCCcccEEEccccCCCcc-
Q 044931 761 GIEWNYPNLKILTLSMSRLVYDPMPLLE-E----LAHLNILRLYRGAYLGEE---TTCSSGGFPQLRVLKLWNLFSLEE- 831 (889)
Q Consensus 761 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~----L~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~- 831 (889)
.+..+ ++|+.|++++|.+.+..+..+. . .+.|+.|++++|.+.... +......+++|++|++++|..-..
T Consensus 216 ~~~~~-~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 216 TLASL-KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred Hhccc-CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 22233 6777777777776543333332 2 367788888776654211 122334457788888887764322
Q ss_pred ---eecccCcc-cccceeeccc
Q 044931 832 ---WTVEKGAM-PRLRELEIRS 849 (889)
Q Consensus 832 ---~~~~~~~l-p~L~~L~l~~ 849 (889)
.......+ +.|+.|++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCC
Confidence 22223334 5677777655
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=1.5e-08 Score=126.81 Aligned_cols=283 Identities=12% Similarity=0.141 Sum_probs=170.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc-ccHHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE-AKVRDVLIDILQQ 250 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~ 250 (889)
+.+|-|+.-.+.+ .... ..+++.|+|.+|.||||++..+.+. ++.++|+++... .++..+...++..
T Consensus 14 ~~~~~R~rl~~~l----~~~~--~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 14 HNTVVRERLLAKL----SGAN--NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred cccCcchHHHHHH----hccc--CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 4566676555544 3322 5689999999999999999998862 236899999644 4566677777777
Q ss_pred hhhhhccc-----------CCCCHHHH----HHhHh--------hhhH-------HhHHHHHhhhccCCCCCCCcEEEEE
Q 044931 251 INDEMLVE-----------ASSPEEEL----ASSLA--------TLTQ-------QVWQVLRNSLYYSSSKSRDGKIILT 300 (889)
Q Consensus 251 l~~~~~~~-----------~~~~~~~l----~~~l~--------v~~~-------~~~~~l~~~l~~~~~~~~gs~iivT 300 (889)
+....... .......+ ...+. |.|+ ...+.+...+... ..+.++|||
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~ 158 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVVL 158 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEEE
Confidence 75322110 00111212 12111 2121 1223444444444 456788899
Q ss_pred cCCCCCcc-cccccCCCeeecc----CCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 301 TSDENNIP-LEAKAAGSTLHVR----RLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 301 TR~~~~v~-~~~~~~~~~~~l~----~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
||...-.. ..........++. +|+.+|+.+||..... .. --.+.+.+|.+.|+|.|+++..++
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~-~~-----------~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS-SP-----------IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC-CC-----------CCHHHHHHHHHHhCChHHHHHHHH
Confidence 99853111 1111112345555 9999999999987664 21 123456789999999999999999
Q ss_pred hhhhcccCCChhhHHHHHHhcccCCCchhhHHHHHH-hhccccccchhhhhhhccCCCCcccchhhhhhhhcccCCcCCC
Q 044931 376 GLLSATKGRNFQKWSSVIERADVDKSDGWVSGLLAL-SYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPI 454 (889)
Q Consensus 376 ~~L~~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~-Sy~~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~ 454 (889)
..+...... .. .....+.. .....+...+.- .|+.||++.+..+...|+++. ++.+-+-...
T Consensus 227 ~~~~~~~~~-~~---~~~~~~~~-~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l~--------- 289 (903)
T PRK04841 227 LSARQNNSS-LH---DSARRLAG-INASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRVT--------- 289 (903)
T ss_pred HHHhhCCCc-hh---hhhHhhcC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHHc---------
Confidence 777543321 11 11111111 012345555433 488999999999999999863 3433222211
Q ss_pred chhHHHHHHHHHHHhcceeeeccccCCCcceeecChhHHHhhhhhhh
Q 044931 455 DTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVFSPEAA 501 (889)
Q Consensus 455 ~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~ 501 (889)
..+.+...+++|.+.+++.... ++....|+.|++++++......
T Consensus 290 ~~~~~~~~L~~l~~~~l~~~~~---~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 290 GEENGQMRLEELERQGLFIQRM---DDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CCCcHHHHHHHHHHCCCeeEee---cCCCCEEehhHHHHHHHHHHHH
Confidence 1234678999999999975322 2223468899999999887653
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=1.8e-07 Score=105.06 Aligned_cols=304 Identities=15% Similarity=0.124 Sum_probs=170.7
Q ss_pred ccccccchhhhHHHHHHHHhccC-CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHH
Q 044931 170 QEINLVGLEEQINNLVSLLIREH-NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 248 (889)
.++.++||++++++|...|...- ......+.|+|.+|+|||++++.++++.......-..++++.....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 44789999999999999985531 11445678999999999999999998432222112355666666667788999999
Q ss_pred HHhhhhhcccCCCCHHHHHHhHh-------------hhhHHh---------HHHHHhhhccCCCCCCCcE--EEEEcCCC
Q 044931 249 QQINDEMLVEASSPEEELASSLA-------------TLTQQV---------WQVLRNSLYYSSSKSRDGK--IILTTSDE 304 (889)
Q Consensus 249 ~~l~~~~~~~~~~~~~~l~~~l~-------------v~~~~~---------~~~l~~~l~~~~~~~~gs~--iivTTR~~ 304 (889)
+++.....+....+.+++...+. +++.+. +..+...+... .+++ +|.++...
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----~~~~v~vI~i~~~~ 183 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----PGARIGVIGISSDL 183 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----CCCeEEEEEEECCc
Confidence 98876322222223333322221 222221 22222222221 2333 56666655
Q ss_pred CCccccccc------CCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 044931 305 NNIPLEAKA------AGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLL 378 (889)
Q Consensus 305 ~~v~~~~~~------~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 378 (889)
. +...... ....+.+++++.++..+++..++. ..... ...++..++.+++......|..+.|+.++-...
T Consensus 184 ~-~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~-~~~~~--~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 184 T-FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE-EGFYP--GVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred c-hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH-hhccc--CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4 3322211 114678999999999999998764 21100 122313344444444444566888877764332
Q ss_pred h--c---ccCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhccC-CC-Ccccchhhhhhh--hccc-
Q 044931 379 S--A---TKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMWFF-PR-AFEIPVRRLICL--WCTE- 448 (889)
Q Consensus 379 ~--~---~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~F-p~-~~~i~~~~Li~~--w~a~- 448 (889)
. . ...-+.+.+..+++... .....-.+..||.+.|..+..++.. .. ...+...++... .+++
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~--------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE--------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 1 11112556655555431 2334556889999887766555422 21 123555555532 2221
Q ss_pred -CCcCCCchhHHHHHHHHHHHhcceeeecc--ccCCCcceeecCh
Q 044931 449 -PFVAPIDTDLAETYFEELVIRNLIHVTKW--RLDGTPKMCRLPT 490 (889)
Q Consensus 449 -g~i~~~~e~~~~~~l~~L~~rsll~~~~~--~~~~~~~~~~mHd 490 (889)
|.- .........|+.+|...+++..... ...|..+.++++.
T Consensus 332 ~~~~-~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 332 LGYE-PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred cCCC-cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 221 2234556789999999999986532 2245555555543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=1.2e-09 Score=104.81 Aligned_cols=130 Identities=24% Similarity=0.227 Sum_probs=42.7
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID 621 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~ 621 (889)
..++.++|.|.+.+|.+. .+..+. . .+..|++|+|++|.++.+.. +..+++|+.|++++|.|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~-------------~Ie~L~-~-~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-------------TIENLG-A-TLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ----------------------------------S---T-T-TT--EEE-TTS--S--TT------TT--EEE--SS---
T ss_pred cccccccccccccccccc-------------cccchh-h-hhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCC
Confidence 344556777777777664 222222 2 45677777777777776653 667777777777777777
Q ss_pred cccccc-CCCCCCcEEeecCCCcccCc--hhhhhcccccccccccccCCCCCC----Ccccccccccccccccc
Q 044931 622 SLPKSV-GILPRLETLDVKHTKLRFLP--DSIWKAKKLQHLYLNWIHSPIDGL----SLSSLNNLQTLWGLSIE 688 (889)
Q Consensus 622 ~lp~~i-~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~----~i~~l~~L~~L~~~~~~ 688 (889)
.++..+ ..+++|++|++++|+|..+- ..+..+++|++|++.+|.....+. .+..+++|+.|.+-.+.
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 775444 35777777777777666543 345667777777777765333221 24455555555444443
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.82 E-value=3e-08 Score=107.73 Aligned_cols=271 Identities=14% Similarity=0.078 Sum_probs=145.8
Q ss_pred cccccchhhhHHHHHHHHhcc--CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIRE--HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 248 (889)
-.+|+|+++.++.+..++... .......+.|+|++|+||||||+.+++. ....+ .++... .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 467999999999998888642 1124677899999999999999999994 33222 122221 112222333444
Q ss_pred HHhhhhhc---cc-CCCCHHHHHHhHhhhhHHhHHHHHhhhccCC-------CCCCCcEEEEEcCCCCCcccccccC-CC
Q 044931 249 QQINDEML---VE-ASSPEEELASSLATLTQQVWQVLRNSLYYSS-------SKSRDGKIILTTSDENNIPLEAKAA-GS 316 (889)
Q Consensus 249 ~~l~~~~~---~~-~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~-------~~~~gs~iivTTR~~~~v~~~~~~~-~~ 316 (889)
..+....- ++ .... ....+.+.-+-.+....+ .+..+. .-.+.+-|..|||... +....... ..
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~--~l~~~~~~~~~~~~l~~~~li~at~~~~~-l~~~L~sRf~~ 173 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDI--MIGKGPAARSIRLDLPPFTLIGATTRAGL-LTSPLRDRFGI 173 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceee--eeccCccccceeecCCCceEEeecCCccc-CCHHHHHhcCe
Confidence 43322110 00 0111 011111110000000000 000000 0012344666777655 44332111 15
Q ss_pred eeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcccCCChhhHHHHHHh-
Q 044931 317 TLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSATKGRNFQKWSSVIER- 395 (889)
Q Consensus 317 ~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~~w~~~l~~- 395 (889)
.+++++++.++..+++.+.+. .... .-..+....|++.|+|.|-.+..+...+. .|......
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~-~~~~--------~~~~~~~~~ia~~~~G~pR~a~~~l~~~~--------~~a~~~~~~ 236 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSAR-ILGV--------EIDEEGALEIARRSRGTPRIANRLLRRVR--------DFAQVKGDG 236 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHH-HcCC--------CcCHHHHHHHHHHcCCCchHHHHHHHHHH--------HHHHHcCCC
Confidence 689999999999999999886 4332 22345688999999999965544443321 22111100
Q ss_pred cccCCCchhhHHHHHHhhccccccchhhhh-hhccCCCCcccchhhhhhhhcccCCcCCCchhHHHHHHH-HHHHhccee
Q 044931 396 ADVDKSDGWVSGLLALSYQELPSKLKPFFF-YMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFE-ELVIRNLIH 473 (889)
Q Consensus 396 l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~-~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~~~~~l~-~L~~rsll~ 473 (889)
......-......+...|..|++..+..+. ....|+.+ .+..+.+.... ....+.++..++ .|++.+|++
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-------g~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-------GEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-------CCCcchHHHHhhHHHHHcCCcc
Confidence 000001122334455667788888777775 66677665 46665554433 334455666667 999999997
Q ss_pred eec
Q 044931 474 VTK 476 (889)
Q Consensus 474 ~~~ 476 (889)
...
T Consensus 309 ~~~ 311 (328)
T PRK00080 309 RTP 311 (328)
T ss_pred cCC
Confidence 543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=8.9e-09 Score=98.82 Aligned_cols=126 Identities=25% Similarity=0.280 Sum_probs=47.2
Q ss_pred CceeeeEEEecCcccCCCChHHhc-cccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhh-hccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIG-KLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIW-KAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L 659 (889)
+...+|.|+|.+|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|.|+.++..+. .+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 5567899999999998764 365 5889999999999999996 78899999999999999999977664 69999999
Q ss_pred ccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch----hhHHHHHhhhcccccccce
Q 044931 660 YLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ----MAIEFIINLLVCARTDGLV 733 (889)
Q Consensus 660 ~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~l~~~l~~l~~L~~L~l~ 733 (889)
++++|....+ ..+. .+..+++|+.|++.++.. ..-...+..+++|+.|+-.
T Consensus 94 ~L~~N~I~~l-------~~l~----------------~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDL-------NELE----------------PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SC-------CCCG----------------GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCCh-------HHhH----------------HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9998754322 1111 123456666677766652 2233455566666666554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=8.7e-09 Score=115.72 Aligned_cols=100 Identities=30% Similarity=0.356 Sum_probs=87.9
Q ss_pred CceeeeEEEecCcccCCCChHHhcccc-CCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLL-NLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLY 660 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 660 (889)
.++.+..|++.++.++.+++ ..+.+. +|++|++++|.+..+|..++.+++|+.|++++|++..+|...+.+++|+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccceeEEecCCcccccCcc-ccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 66789999999999999998 777775 9999999999999998889999999999999999999998888999999999
Q ss_pred cccccCCCCCCCcccccccccc
Q 044931 661 LNWIHSPIDGLSLSSLNNLQTL 682 (889)
Q Consensus 661 l~~~~~~~~~~~i~~l~~L~~L 682 (889)
++++....+|..++.+..|++|
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEEL 214 (394)
T ss_pred ccCCccccCchhhhhhhhhhhh
Confidence 9998888887776666666666
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=2.3e-09 Score=106.38 Aligned_cols=201 Identities=19% Similarity=0.122 Sum_probs=110.7
Q ss_pred ccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCC
Q 044931 622 SLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKW 701 (889)
Q Consensus 622 ~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l 701 (889)
.+|..+.-+.+|.++.++.|.-..+-.-...-+.|+.+.+.+......| .+-..+.+..+..-.-....+.....+..+
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 3455555667777777777733332211122344666666553322221 111112222111111111134455556677
Q ss_pred CCCCeeecccCchhhHHHHHhhhcccccccceec---ccCC-ccccccccccccccc-cccccccccccCCCccEEEeec
Q 044931 702 PRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEI---EYGE-ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSM 776 (889)
Q Consensus 702 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~---~l~~-~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~ 776 (889)
..|..|+++++....+..++.-.+.++.|+++.+ ..+. ..+++|+.|+++++. .++-. |-..+ .|++.|.|++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KL-GNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKL-GNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhh-cCEeeeehhh
Confidence 7888888888877666677777777777777754 2333 455666666666654 33333 44444 6677777776
Q ss_pred cCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccC
Q 044931 777 SRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLF 827 (889)
Q Consensus 777 ~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (889)
|.+ +.+..+++|-+|..|++++|++..-+-...++++|.|+.|.|.+|+
T Consensus 362 N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 665 3455666666666777766666544444456666666666666666
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.76 E-value=1.2e-07 Score=102.32 Aligned_cols=267 Identities=15% Similarity=0.075 Sum_probs=141.0
Q ss_pred ccccchhhhHHHHHHHHhccCC--CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHN--HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.+|||+++.++.|..++..... .....+.++|++|+|||+||+.+.+. ....| ..+..+..... ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHHH
Confidence 5799999999999998874311 14567889999999999999999983 33222 12222111111 12222233
Q ss_pred Hhhhhhc---cc-CCCCHHHHHHhHh-hhhHHhHHHH-HhhhccC---CCCCCCcEEEEEcCCCCCcccccccC-CCeee
Q 044931 250 QINDEML---VE-ASSPEEELASSLA-TLTQQVWQVL-RNSLYYS---SSKSRDGKIILTTSDENNIPLEAKAA-GSTLH 319 (889)
Q Consensus 250 ~l~~~~~---~~-~~~~~~~l~~~l~-v~~~~~~~~l-~~~l~~~---~~~~~gs~iivTTR~~~~v~~~~~~~-~~~~~ 319 (889)
.+....- ++ ..... ...+.+. +.+...-..+ ....... ....+.+-|..||+... +....... ...++
T Consensus 78 ~~~~~~vl~iDEi~~l~~-~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~-l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSP-AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGM-LTSPLRDRFGIILR 155 (305)
T ss_pred hcccCCEEEEehHhhhCH-HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccc-cCHHHHhhcceEEE
Confidence 3221110 00 00110 1111111 0000000000 0000000 00012445666777655 44332111 15689
Q ss_pred ccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcc------cCCChhhHHHHH
Q 044931 320 VRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSAT------KGRNFQKWSSVI 393 (889)
Q Consensus 320 l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~------~~~~~~~w~~~l 393 (889)
+++++.+|..+++.+.+. .... .. ..+....|++.|+|.|-.+..++..+... ..-+.+..+
T Consensus 156 l~~l~~~e~~~il~~~~~-~~~~----~~----~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~--- 223 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAG-LLNV----EI----EPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL--- 223 (305)
T ss_pred eCCCCHHHHHHHHHHHHH-HhCC----Cc----CHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---
Confidence 999999999999998886 3321 12 24566789999999997665555432110 000011111
Q ss_pred HhcccCCCchhhHHHHHHhhccccccchhhhh-hhccCCCCcccchhhhhhhhcccCCcCCCchhHHHHHHH-HHHHhcc
Q 044931 394 ERADVDKSDGWVSGLLALSYQELPSKLKPFFF-YMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFE-ELVIRNL 471 (889)
Q Consensus 394 ~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~-~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~~~~~l~-~L~~rsl 471 (889)
.....+...|..|+++.+..+. ..+.++.+ .+..+.+.... ......++..++ .|++++|
T Consensus 224 ----------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-------g~~~~~~~~~~e~~Li~~~l 285 (305)
T TIGR00635 224 ----------KALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-------GEDADTIEDVYEPYLLQIGF 285 (305)
T ss_pred ----------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-------CCCcchHHHhhhHHHHHcCC
Confidence 2222355667888888777666 55666544 45544443322 334456777778 6999999
Q ss_pred eeeec
Q 044931 472 IHVTK 476 (889)
Q Consensus 472 l~~~~ 476 (889)
++...
T Consensus 286 i~~~~ 290 (305)
T TIGR00635 286 LQRTP 290 (305)
T ss_pred cccCC
Confidence 97443
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=4.4e-10 Score=120.85 Aligned_cols=152 Identities=23% Similarity=0.195 Sum_probs=109.1
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.|-.|..|.|..|.+-.+|. .++++..|.||+|+.|.+..+|..++.|+ |+.|.+++|+++.+|.+++.+..|.+|+.
T Consensus 96 ~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence 45556677777777777777 78888888888888888888888877765 78888888888888888887778888888
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccC
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYG 738 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~ 738 (889)
+.|....+|..++.+.+|+.|... -+. -...++++..| .|.+|++++++...++..+.+|++|+.|.|.++++.
T Consensus 174 s~nei~slpsql~~l~slr~l~vr-Rn~-l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVR-RNH-LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHh-hhh-hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 877777777777777777766221 111 23345555544 366777777766777777888888888777766444
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=6.1e-09 Score=109.02 Aligned_cols=203 Identities=21% Similarity=0.224 Sum_probs=120.0
Q ss_pred ccccCCcEEeCCCCCCcccc--cccCCCCCCcEEeecCCCccc---CchhhhhcccccccccccccCCCCCCCccccccc
Q 044931 605 GKLLNLRYLGLRSTFIDSLP--KSVGILPRLETLDVKHTKLRF---LPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNL 679 (889)
Q Consensus 605 ~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L 679 (889)
.++.+||...|.++.+...+ .....|++++.|||+.|-+.. +-.-...|++|+.|+++.|..... +++..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~---~~s~~-- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF---ISSNT-- 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC---ccccc--
Confidence 35666777777766666555 245567777777777774443 223345577777777776542211 11100
Q ss_pred ccccccccccCCCccccCCCCCCCCCeeecccCch--hhHHHHHhhhcccccccceecccCCccccccccccccccc---
Q 044931 680 QTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ--MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSI--- 754 (889)
Q Consensus 680 ~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~--- 754 (889)
-..+++|+.|.++.|.. ..+...+.. +|+|+.|.+.++-
T Consensus 193 ------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~------------------fPsl~~L~L~~N~~~~ 236 (505)
T KOG3207|consen 193 ------------------TLLLSHLKQLVLNSCGLSWKDVQWILLT------------------FPSLEVLYLEANEIIL 236 (505)
T ss_pred ------------------hhhhhhhheEEeccCCCCHHHHHHHHHh------------------CCcHHHhhhhcccccc
Confidence 01345566666666653 333333333 5556666665431
Q ss_pred -cccccccccccCCCccEEEeeccCCCC-CCchhhhcCCCCCeEEeecCccCCCcceeC-----CCCCCcccEEEccccC
Q 044931 755 -HSFFDYGIEWNYPNLKILTLSMSRLVY-DPMPLLEELAHLNILRLYRGAYLGEETTCS-----SGGFPQLRVLKLWNLF 827 (889)
Q Consensus 755 -~~~p~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~ 827 (889)
...+. ..+..|+.|+|++|.+.. +.....+.||.|..|+++.+.+.....+.. ...||+|++|++..|+
T Consensus 237 ~~~~~~----~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 237 IKATST----KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred eecchh----hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 11111 123778888888887653 334667888888888888776655433333 4678999999999887
Q ss_pred CCcceec--ccCcccccceeecccccCCC
Q 044931 828 SLEEWTV--EKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 828 ~l~~~~~--~~~~lp~L~~L~l~~C~~L~ 854 (889)
+..|+. .+..+++|+.|.+-. +.+.
T Consensus 313 -I~~w~sl~~l~~l~nlk~l~~~~-n~ln 339 (505)
T KOG3207|consen 313 -IRDWRSLNHLRTLENLKHLRITL-NYLN 339 (505)
T ss_pred -cccccccchhhccchhhhhhccc-cccc
Confidence 555653 344577788887753 6665
No 36
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.73 E-value=2.8e-06 Score=94.30 Aligned_cols=291 Identities=16% Similarity=0.161 Sum_probs=159.7
Q ss_pred ccccchhhhHHHHHHHHhccC-CCCceEEEEECCCCCcHHHHHHHHhcccccc-ccC---CceEEEEeCCcccHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREH-NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK-RHF---AKRAWVRVRSEAKVRDVLID 246 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~~~~~ 246 (889)
+.++||++++++|..+|...- ......+.|+|++|+|||++++.+++..... ... -..+|++.....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 579999999999999997521 1144679999999999999999999842211 111 13567777666677889999
Q ss_pred HHHHhhh--hhcccCCCCHHH----HHHhHh---------hhhHHhH----HH-HHhhhcc---CCCCCCCcEEEEEcCC
Q 044931 247 ILQQIND--EMLVEASSPEEE----LASSLA---------TLTQQVW----QV-LRNSLYY---SSSKSRDGKIILTTSD 303 (889)
Q Consensus 247 i~~~l~~--~~~~~~~~~~~~----l~~~l~---------v~~~~~~----~~-l~~~l~~---~~~~~~gs~iivTTR~ 303 (889)
|++++.. ...+....+..+ +.+.+. +++.+.. +. +...+.. ....+....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 9998842 111111122222 222221 2222222 11 1111111 1000122345555554
Q ss_pred CCCcccccc----cC--CCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchH-HHHHhh
Q 044931 304 ENNIPLEAK----AA--GSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIR-IVLLGG 376 (889)
Q Consensus 304 ~~~v~~~~~----~~--~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa-i~~~g~ 376 (889)
.. ...... .. ...+.+++.+.++-.+++..++. ..... ...+ ++..+...+++....|.|-. +.++-.
T Consensus 175 ~~-~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~-~~~~~--~~~~-~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 175 LK-FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE-KAFYD--GVLD-DGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred cc-hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH-hhccC--CCCC-hhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 43 211111 11 14688999999999999998863 11110 1223 44445556677777888843 333222
Q ss_pred hh--h---cccCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhccCC--CCcccchhhhhhhhc--c
Q 044931 377 LL--S---ATKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMWFFP--RAFEIPVRRLICLWC--T 447 (889)
Q Consensus 377 ~L--~---~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp--~~~~i~~~~Li~~w~--a 447 (889)
.. . ....-+.+....+.+.+. .....-++..||.+.+..+..++..- ++..+...++...+. +
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~--------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE--------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 11 1 111112444444444321 23344567788888876655544211 333456666655321 1
Q ss_pred c--CCcCCCchhHHHHHHHHHHHhcceeeec
Q 044931 448 E--PFVAPIDTDLAETYFEELVIRNLIHVTK 476 (889)
Q Consensus 448 ~--g~i~~~~e~~~~~~l~~L~~rsll~~~~ 476 (889)
+ | +..........++..|...+++....
T Consensus 322 ~~~~-~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 322 EDIG-VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HhcC-CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1 2 12455677889999999999998754
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.59 E-value=4.1e-06 Score=88.67 Aligned_cols=171 Identities=20% Similarity=0.202 Sum_probs=97.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHH----HHHHhH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEE----ELASSL 270 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~----~l~~~l 270 (889)
+..++.|+|.+|+|||||++.+++.... ..+ ..+|+. ....+..+++..|...++.... . .... .+...+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~--~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETE--G-RDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCC--C-CCHHHHHHHHHHHH
Confidence 3468999999999999999999985321 111 123433 3345677888888887765432 1 1111 222211
Q ss_pred h------------hhh-----HHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc---------cCCCeeeccCCC
Q 044931 271 A------------TLT-----QQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK---------AAGSTLHVRRLN 324 (889)
Q Consensus 271 ~------------v~~-----~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~---------~~~~~~~l~~L~ 324 (889)
. +++ .+.++.+...............|++|... . ...... .....+++++++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-E-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-H-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 1 111 23455554322211000122344555542 1 111111 111467899999
Q ss_pred hhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 044931 325 EEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLL 378 (889)
Q Consensus 325 ~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 378 (889)
.+|..+++...+. ..+.. ... .-..+..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~-~~g~~---~~~-~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLE-RAGNR---DAP-VFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHH-HcCCC---CCC-CcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987764 22210 000 1235788899999999999999999776
No 38
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=3.3e-07 Score=94.81 Aligned_cols=184 Identities=22% Similarity=0.211 Sum_probs=91.4
Q ss_pred ccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHH------
Q 044931 174 LVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDI------ 247 (889)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i------ 247 (889)
|+||++++++|.+++..+ ..+.+.|+|..|+|||+|++.+.+ ..+..-..++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~---~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNESS-LRSFIEETSL 74 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh---cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhhH-HHHHHHHHHH
Confidence 799999999999999875 347899999999999999999998 3432222455554444432221 2221
Q ss_pred ----HHHhhhhhcc------------cCCCCHHHHHHhHh---------------hh-----hHHhHHHHHhhhccCCCC
Q 044931 248 ----LQQINDEMLV------------EASSPEEELASSLA---------------TL-----TQQVWQVLRNSLYYSSSK 291 (889)
Q Consensus 248 ----~~~l~~~~~~------------~~~~~~~~l~~~l~---------------v~-----~~~~~~~l~~~l~~~~~~ 291 (889)
.+.+...... ........+.+.+. +. .......+...+......
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ 154 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc
Confidence 1112111110 01122233333332 12 012223344444331000
Q ss_pred CCCcEEEEEcCCCCCcccc-------cccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHh
Q 044931 292 SRDGKIILTTSDENNIPLE-------AKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKC 364 (889)
Q Consensus 292 ~~gs~iivTTR~~~~v~~~-------~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c 364 (889)
.+.+.|+++|. .. +... .......+.+++|+.+++++++..... .. . .. +.-.+..++|...+
T Consensus 155 ~~~~~v~~~S~-~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~-~~-~----~~--~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 155 QNVSIVITGSS-DS-LMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFK-EL-I----KL--PFSDEDIEEIYSLT 224 (234)
T ss_dssp TTEEEEEEESS-HH-HHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHH-CC-------------HHHHHHHHHHH
T ss_pred CCceEEEECCc-hH-HHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHH-Hh-h----cc--cCCHHHHHHHHHHh
Confidence 33344444443 22 2211 111115599999999999999999765 22 1 00 12345568999999
Q ss_pred CCCchHHHH
Q 044931 365 GGLPIRIVL 373 (889)
Q Consensus 365 ~GlPLai~~ 373 (889)
||.|..|..
T Consensus 225 gG~P~~l~~ 233 (234)
T PF01637_consen 225 GGNPRYLQE 233 (234)
T ss_dssp TT-HHHHHH
T ss_pred CCCHHHHhc
Confidence 999988754
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=4e-09 Score=113.66 Aligned_cols=176 Identities=24% Similarity=0.218 Sum_probs=131.1
Q ss_pred CCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCC
Q 044931 539 PSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRST 618 (889)
Q Consensus 539 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~ 618 (889)
+.....+-.|.++.+..|.+.. ++..+. ++..|.+|||+.|++..+|. .++.|+ |+.|-+++|
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~------------ip~~i~---~L~~lt~l~ls~NqlS~lp~-~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRT------------IPEAIC---NLEALTFLDLSSNQLSHLPD-GLCDLP-LKVLIVSNN 153 (722)
T ss_pred chHHHHHHHHHHHHHHhcccee------------cchhhh---hhhHHHHhhhccchhhcCCh-hhhcCc-ceeEEEecC
Confidence 4445566677778887777642 333444 88889999999999988888 788775 899999999
Q ss_pred CCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCC
Q 044931 619 FIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDS 698 (889)
Q Consensus 619 ~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l 698 (889)
+++.+|..|+.+..|..||.+.|.+..+|..++.+.+|+.|.+..|....+|..+..| .|..| .|.+++ ....+-++
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~l-DfScNk-is~iPv~f 230 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRL-DFSCNK-ISYLPVDF 230 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeee-ecccCc-eeecchhh
Confidence 9999999999888999999999999999999999999999999888888888777643 34445 355554 34466778
Q ss_pred CCCCCCCeeecccCchhhHHHHHhhhcc---ccccccee
Q 044931 699 TKWPRLIKLGVKCDSQMAIEFIINLLVC---ARTDGLVE 734 (889)
Q Consensus 699 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~---L~~L~l~~ 734 (889)
.+|++|+.|.+.++....-++.++.+.. .++|++..
T Consensus 231 r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchh
Confidence 8999999999988875444444444332 24444443
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.5e-08 Score=104.48 Aligned_cols=200 Identities=20% Similarity=0.202 Sum_probs=133.6
Q ss_pred hhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch---hhHHHHHhhhcc
Q 044931 650 IWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ---MAIEFIINLLVC 726 (889)
Q Consensus 650 i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~l~~~l~~l~~ 726 (889)
=.++.+|+...|.++.....+.. .....|++++.|+++.+-. ..+......+++
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~-----------------------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~ 173 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIE-----------------------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPS 173 (505)
T ss_pred hhhHHhhhheeecCccccccchh-----------------------hhhhhCCcceeecchhhhHHhHHHHHHHHHhccc
Confidence 35577788777777543322210 2345667778888877652 677778888899
Q ss_pred cccccceecc----cCC---ccccccccccccccccccc-cccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEe
Q 044931 727 ARTDGLVEIE----YGE---ARVTTLQELYLRGSIHSFF-DYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRL 798 (889)
Q Consensus 727 L~~L~l~~~~----l~~---~~~~~L~~L~l~~~~~~~p-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L 798 (889)
|+.|+++.+- .+. ..+++|+.|.|++|--+.- -.|+...+|+|..|+|..|...........-+..|+.|+|
T Consensus 174 Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 174 LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred chhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 9999998762 222 4567888999887542211 1144444599999999998422222233455778899999
Q ss_pred ecCccCCCcceeCCCCCCcccEEEccccCCCcce--ecc-----cCcccccceeecccccCCCCCCCc--chhhhhcccc
Q 044931 799 YRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEW--TVE-----KGAMPRLRELEIRSCNNLKPPQPQ--GLQNLTNTLK 869 (889)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~-----~~~lp~L~~L~l~~C~~L~~~lp~--~l~~l~~~L~ 869 (889)
++|++.........+.||.|..|+++.|. +.++ |.. ...||+|+.|++.. |++. .+++ .+..++ +|+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~-~w~sl~~l~~l~-nlk 329 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE-NNIR-DWRSLNHLRTLE-NLK 329 (505)
T ss_pred cCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeeccc-Cccc-cccccchhhccc-hhh
Confidence 98888775555567889999999999887 4544 222 34689999999999 8886 5554 455666 777
Q ss_pred eEEeccC
Q 044931 870 EFVLTNM 876 (889)
Q Consensus 870 ~L~l~~c 876 (889)
.|.+...
T Consensus 330 ~l~~~~n 336 (505)
T KOG3207|consen 330 HLRITLN 336 (505)
T ss_pred hhhcccc
Confidence 7765543
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=1.1e-07 Score=106.96 Aligned_cols=95 Identities=28% Similarity=0.331 Sum_probs=80.5
Q ss_pred eEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCC-CCcEEeecCCCcccCchhhhhccccccccccccc
Q 044931 587 TVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILP-RLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 587 r~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 665 (889)
..|++..+.+...+. .+..+.++..|++.++.+..+|..++.+. +|+.|++++|++..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCch-hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 368888888755555 67788999999999999999999998885 9999999999999999899999999999999988
Q ss_pred CCCCCCCcccccccccc
Q 044931 666 SPIDGLSLSSLNNLQTL 682 (889)
Q Consensus 666 ~~~~~~~i~~l~~L~~L 682 (889)
....|...+.+.+|+.|
T Consensus 175 l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 175 LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhhhhhhhhhhhhhhhe
Confidence 77777666555555555
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=7.5e-08 Score=75.76 Aligned_cols=60 Identities=30% Similarity=0.411 Sum_probs=46.3
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKL 643 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l 643 (889)
++|++|++++|.+..+++..|.++++|++|++++|.++.+| ..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35778888888888777767788888888888888888776 4677888888888887754
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.7e-08 Score=100.48 Aligned_cols=130 Identities=22% Similarity=0.133 Sum_probs=70.4
Q ss_pred CCCCCCCCeeecccCch---hhHHHHHhhhcccccccceecccCC--------ccccccccccccccccccccccc---c
Q 044931 698 STKWPRLIKLGVKCDSQ---MAIEFIINLLVCARTDGLVEIEYGE--------ARVTTLQELYLRGSIHSFFDYGI---E 763 (889)
Q Consensus 698 l~~l~~L~~L~l~~~~~---~~l~~~l~~l~~L~~L~l~~~~l~~--------~~~~~L~~L~l~~~~~~~p~~~~---~ 763 (889)
+.+-.+|+.|+++.++. .++.-.+..++.|..|++++|.+.. .--++|+.|+|+|+...+-...+ .
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 44445556666665552 3444455666666666666652211 12346777777775433221111 1
Q ss_pred ccCCCccEEEeecc-CCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccC
Q 044931 764 WNYPNLKILTLSMS-RLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLF 827 (889)
Q Consensus 764 ~~~~~L~~L~L~~~-~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (889)
.-||+|..|+|++| .++.+....+-+++.|++|.++.|-.........+...|+|.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 23577777777776 34444445566677777777765443333333445566677777766653
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.43 E-value=2e-08 Score=102.49 Aligned_cols=245 Identities=20% Similarity=0.215 Sum_probs=134.0
Q ss_pred CceeeeEEEecCcccCC----CChHHhccccCCcEEeCCCC----CCccccc-------ccCCCCCCcEEeecCCCcc--
Q 044931 582 GFVLLTVLDLEGVYKLK----LSDDVIGKLLNLRYLGLRST----FIDSLPK-------SVGILPRLETLDVKHTKLR-- 644 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~----l~~~~i~~l~~Lr~L~L~~~----~i~~lp~-------~i~~L~~L~~L~L~~~~l~-- 644 (889)
.+..+..|+|+||.+.. .....+.+.++||..++++- ...++|+ .+-..++|++||||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 66677777888777651 11225566677777777653 1224443 3445678999999988443
Q ss_pred cC---chhhhhcccccccccccccCCCCC-CCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-----h
Q 044931 645 FL---PDSIWKAKKLQHLYLNWIHSPIDG-LSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-----M 715 (889)
Q Consensus 645 ~l---p~~i~~L~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----~ 715 (889)
.+ -.-+..+..|++|+|.+|...... ..++ ..|+.|. + ....+.-++|+.+.+..+.. .
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---~-------~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---V-------NKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---H-------HhccCCCcceEEEEeeccccccccHH
Confidence 22 234667888999999988632211 1111 1233332 1 12245556788887777662 4
Q ss_pred hHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCCCCCc----hhhhcCC
Q 044931 716 AIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPM----PLLEELA 791 (889)
Q Consensus 716 ~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~L~ 791 (889)
.+...+...+.|+.+.++.+.+.. + |- ..+-. .+. .|++|+.|+|.+|.++...- ..+..+|
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~---e--------G~-~al~e-al~-~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRP---E--------GV-TALAE-ALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred HHHHHHHhccccceEEEecccccC---c--------hh-HHHHH-HHH-hCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 455555555556655554321111 0 00 00000 111 23667777777776553322 2344566
Q ss_pred CCCeEEeecCccCCCcce----eCCCCCCcccEEEccccCCCcc----eecccCcccccceeecccccCC
Q 044931 792 HLNILRLYRGAYLGEETT----CSSGGFPQLRVLKLWNLFSLEE----WTVEKGAMPRLRELEIRSCNNL 853 (889)
Q Consensus 792 ~L~~L~L~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~lp~L~~L~l~~C~~L 853 (889)
+|+.|++++|......-. ....++|+|+.|.+.+|..... +.......|.|..|+|.+ |.+
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng-N~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG-NRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc-ccc
Confidence 777777766655443211 1123477788888877764332 223345578888888887 556
No 45
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.42 E-value=7.2e-06 Score=93.82 Aligned_cols=285 Identities=19% Similarity=0.183 Sum_probs=175.1
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc-ccHHHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE-AKVRDVLIDILQ 249 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~ 249 (889)
....|-|.. +.+.|.... +.|.+.|..++|.|||||+..... +... =..+.|.+.+.. .++..++..++.
T Consensus 18 ~~~~v~R~r----L~~~L~~~~--~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRAN--DYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred cccccccHH----HHHHHhcCC--CceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHH
Confidence 344555554 444555443 679999999999999999999975 2222 235899988665 467788888888
Q ss_pred Hhhhhhccc-----------CCCCHHHHHHhHh------------hhh-------HHhHHHHHhhhccCCCCCCCcEEEE
Q 044931 250 QINDEMLVE-----------ASSPEEELASSLA------------TLT-------QQVWQVLRNSLYYSSSKSRDGKIIL 299 (889)
Q Consensus 250 ~l~~~~~~~-----------~~~~~~~l~~~l~------------v~~-------~~~~~~l~~~l~~~~~~~~gs~iiv 299 (889)
.+....+.. ...+...+...+. |.| ...-..+...+... ..+-..||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv 165 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVV 165 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEE
Confidence 877543310 1122222222222 111 11112233334444 45678999
Q ss_pred EcCCCCCccccc--ccCCCeeecc----CCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 300 TTSDENNIPLEA--KAAGSTLHVR----RLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 300 TTR~~~~v~~~~--~~~~~~~~l~----~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
|||+.. -.... ...+...++. .++.+|+-++|..... . +-.+...+.+.++.+|-+-|+..
T Consensus 166 ~SR~rP-~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l-----------~Ld~~~~~~L~~~teGW~~al~L 232 (894)
T COG2909 166 TSRSRP-QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-L-----------PLDAADLKALYDRTEGWAAALQL 232 (894)
T ss_pred EeccCC-CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-C-----------CCChHHHHHHHhhcccHHHHHHH
Confidence 999876 11111 1111333333 6899999999988753 1 22345677899999999999999
Q ss_pred HhhhhhcccCCChhhHHHHHHhcccCCCchhhH-HHHHHhhccccccchhhhhhhccCCCCcccchhhhhhhhcccCCcC
Q 044931 374 LGGLLSATKGRNFQKWSSVIERADVDKSDGWVS-GLLALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVA 452 (889)
Q Consensus 374 ~g~~L~~~~~~~~~~w~~~l~~l~~~~~~~~i~-~~l~~Sy~~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~ 452 (889)
++=.++.... .+.--..+.-. ..-+. -...--++.||+++|..++-||+++.= . ..|+..
T Consensus 233 ~aLa~~~~~~--~~q~~~~LsG~-----~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~-------- 293 (894)
T COG2909 233 IALALRNNTS--AEQSLRGLSGA-----ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNA-------- 293 (894)
T ss_pred HHHHccCCCc--HHHHhhhccch-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHH--------
Confidence 9988872222 22221111100 01111 133445789999999999999998652 1 222222
Q ss_pred CCchhHHHHHHHHHHHhcceeeeccccCCCcceeecChhHHHhhhhhhhh
Q 044931 453 PIDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVFSPEAAK 502 (889)
Q Consensus 453 ~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~ 502 (889)
-+.++.+...+++|.+++++-..- ++....|+.|.+..++.+.....
T Consensus 294 Ltg~~ng~amLe~L~~~gLFl~~L---dd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 294 LTGEENGQAMLEELERRGLFLQRL---DDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HhcCCcHHHHHHHHHhCCCceeee---cCCCceeehhHHHHHHHHhhhcc
Confidence 234567889999999999886433 33445799999999998776654
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.9e-08 Score=104.86 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=55.3
Q ss_pred eeeeEEEecCcccCCCC--hHHhccccCCcEEeCCCCC-Cc--ccccccCCCCCCcEEeecCC-CcccCc--hhhhhccc
Q 044931 584 VLLTVLDLEGVYKLKLS--DDVIGKLLNLRYLGLRSTF-ID--SLPKSVGILPRLETLDVKHT-KLRFLP--DSIWKAKK 655 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~--~~~i~~l~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~-~l~~lp--~~i~~L~~ 655 (889)
..|+.|.+.|+.-.... ...-.++++++.|++.++. ++ .+-..-..+.+|+.|++..| .++... .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46888999998743221 1245578888888888773 33 12222345788999999998 676432 23445899
Q ss_pred cccccccccc
Q 044931 656 LQHLYLNWIH 665 (889)
Q Consensus 656 L~~L~l~~~~ 665 (889)
|.+|++++|.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 9999999986
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=7.4e-08 Score=95.84 Aligned_cols=76 Identities=26% Similarity=0.269 Sum_probs=35.8
Q ss_pred eeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccccc
Q 044931 586 LTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNW 663 (889)
Q Consensus 586 Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 663 (889)
|..|||++|.|+.+.. ++.-++.+|.|++++|.|..+. ++..|++|+.|||++|.++++-..=.+|-|.+.|.+++
T Consensus 286 LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchhhhhh-hhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 4445555555544444 4444445555555555444443 24444555555555554444433333344444444444
No 48
>PF05729 NACHT: NACHT domain
Probab=98.33 E-value=2.5e-06 Score=82.90 Aligned_cols=135 Identities=21% Similarity=0.199 Sum_probs=74.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcccccccc----CCceEEEEeCCcccHH---HHHHHHHHHhhhhhcccCCCCHHHHHHh
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRH----FAKRAWVRVRSEAKVR---DVLIDILQQINDEMLVEASSPEEELASS 269 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~l~~~ 269 (889)
|++.|+|.+|+||||+++.++.+...... +...+|++........ .+...|..+.......... ....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~ 79 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-LLQELLEK 79 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-HHHHHHHc
Confidence 58999999999999999999885333332 3456677665544332 2333333332221110000 00011111
Q ss_pred H-h----hhhHH------------hHHH-HHhhhccCCCCCCCcEEEEEcCCCCCc---ccccccCCCeeeccCCChhhH
Q 044931 270 L-A----TLTQQ------------VWQV-LRNSLYYSSSKSRDGKIILTTSDENNI---PLEAKAAGSTLHVRRLNEEES 328 (889)
Q Consensus 270 l-~----v~~~~------------~~~~-l~~~l~~~~~~~~gs~iivTTR~~~~v---~~~~~~~~~~~~l~~L~~~es 328 (889)
- + ++.-| .+.. +...++... .++.++|||||... . ....... ..+++.+|++++.
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~liit~r~~~-~~~~~~~~~~~-~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQAL--PPGVKLIITSRPRA-FPDLRRRLKQA-QILELEPFSEEDI 155 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhcc--CCCCeEEEEEcCCh-HHHHHHhcCCC-cEEEECCCCHHHH
Confidence 0 0 11111 1222 333444411 46899999999887 4 2223332 6899999999999
Q ss_pred HHHHHHHh
Q 044931 329 WKLLLKRA 336 (889)
Q Consensus 329 ~~Lf~~~a 336 (889)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997654
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=6e-06 Score=89.08 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=114.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccc----cccccCCceEEEE-eCCcccHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV----DVKRHFAKRAWVR-VRSEAKVRDVLID 246 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~-v~~~~~~~~~~~~ 246 (889)
.+++|-+..++.+..++..+. -..+..++|..|+||||+|+.+++.. ....|+|...|.. -+....+.+ +++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~--~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~ 80 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR--FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRN 80 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC--CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHH
Confidence 468899999999999997654 45678999999999999999988721 1234566666655 233344444 334
Q ss_pred HHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChh
Q 044931 247 ILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEE 326 (889)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~ 326 (889)
+.+.+..... .....--+.+....++...|+.+...+... ..++.+|++|.+.+.+..........+++.+++++
T Consensus 81 ~~~~~~~~p~--~~~~kv~iI~~ad~m~~~a~naLLK~LEep---p~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~ 155 (313)
T PRK05564 81 IIEEVNKKPY--EGDKKVIIIYNSEKMTEQAQNAFLKTIEEP---PKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKE 155 (313)
T ss_pred HHHHHhcCcc--cCCceEEEEechhhcCHHHHHHHHHHhcCC---CCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHH
Confidence 4443322111 000000000000134556788888888876 67889998887765343333333378999999999
Q ss_pred hHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 327 ESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 327 es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
+....+.+... .. ..+.+..++..++|.|..+...
T Consensus 156 ~~~~~l~~~~~--~~-----------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 156 EIEKFISYKYN--DI-----------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHHHhc--CC-----------CHHHHHHHHHHcCCCHHHHHHH
Confidence 99887765532 11 1233668899999998765444
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=5.4e-07 Score=89.89 Aligned_cols=82 Identities=23% Similarity=0.167 Sum_probs=56.1
Q ss_pred CceeeeEEEecCcccCC---CChHHhccccCCcEEeCCCCCCccccccc-CCCCCCcEEeecCCCc--ccCchhhhhccc
Q 044931 582 GFVLLTVLDLEGVYKLK---LSDDVIGKLLNLRYLGLRSTFIDSLPKSV-GILPRLETLDVKHTKL--RFLPDSIWKAKK 655 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~---l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l--~~lp~~i~~L~~ 655 (889)
.+..++.|||.+|.|+. +.. .+.+|++|++|+|+.|.+...-..+ -.+.||++|.|.++.+ +.....+..+++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 67788888888888773 222 4567888888888888554221121 2456888888888844 355566777888
Q ss_pred ccccccccc
Q 044931 656 LQHLYLNWI 664 (889)
Q Consensus 656 L~~L~l~~~ 664 (889)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 888877764
No 51
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=2.1e-05 Score=95.18 Aligned_cols=304 Identities=16% Similarity=0.147 Sum_probs=172.2
Q ss_pred cccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceE---EEEeCCc---ccHHHHHHH
Q 044931 173 NLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRA---WVRVRSE---AKVRDVLID 246 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---wv~v~~~---~~~~~~~~~ 246 (889)
.++||+.+++.|...+..-..+...++.+.|..|||||+|+++|.. .+.+.+...+ +-....+ ....+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3799999999999999876655678999999999999999999988 4544322111 1111111 223345555
Q ss_pred HHHHhhhhhccc--------------CCCCHHHHHHhH------------------------------h-----------
Q 044931 247 ILQQINDEMLVE--------------ASSPEEELASSL------------------------------A----------- 271 (889)
Q Consensus 247 i~~~l~~~~~~~--------------~~~~~~~l~~~l------------------------------~----------- 271 (889)
++.++......+ ......++...+ .
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 555552211100 000000000000 0
Q ss_pred hhhHHhHH-----HHHhhhccCCC--CCCCcEEEE--EcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCcc
Q 044931 272 TLTQQVWQ-----VLRNSLYYSSS--KSRDGKIIL--TTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAA 342 (889)
Q Consensus 272 v~~~~~~~-----~l~~~l~~~~~--~~~gs~iiv--TTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~ 342 (889)
+.++-.|- .+...+-.... .-.-..|.. |.+..-............+.|.||+..+...+...... ...
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~-~~~- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG-CTK- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC-Ccc-
Confidence 11111121 11111111100 000112322 33322101112222227899999999999999988775 211
Q ss_pred ccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcc------cCCChhhHHHHHHhcccCCCchhhHHHHHHhhccc
Q 044931 343 ESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSAT------KGRNFQKWSSVIERADVDKSDGWVSGLLALSYQEL 416 (889)
Q Consensus 343 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~------~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L 416 (889)
....+....|+++..|.|+=+.-+-..+... .+ ...|..-...+......+.+...+..-.+.|
T Consensus 237 --------~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~--~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL 306 (849)
T COG3899 237 --------LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFD--TGAWQCSIASLGILATTDAVVEFLAARLQKL 306 (849)
T ss_pred --------cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCC--CcceeccHHhcCCchhhHHHHHHHHHHHhcC
Confidence 3456778899999999999998888887763 22 4455544444444333444666788999999
Q ss_pred cccchhhhhhhccCCCCcccchhhhhhhhcccCCcCCCchhHHHHHHHHHHHhcceeeeccccCC---Ccc-eeecChhH
Q 044931 417 PSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFEELVIRNLIHVTKWRLDG---TPK-MCRLPTVL 492 (889)
Q Consensus 417 ~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~~~~~l~~L~~rsll~~~~~~~~~---~~~-~~~mHdlv 492 (889)
|...|......|++=. .|+.+.|-..+-. .....+...++.|....++........+ ... +--.|+.+
T Consensus 307 ~~~t~~Vl~~AA~iG~--~F~l~~La~l~~~------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 307 PGTTREVLKAAACIGN--RFDLDTLAALAED------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred CHHHHHHHHHHHHhCc--cCCHHHHHHHHhh------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999999999854 4556666555432 3456677777777766666433211111 111 11357887
Q ss_pred HHhhhh
Q 044931 493 YDVFSP 498 (889)
Q Consensus 493 ~~~~~~ 498 (889)
++.+-.
T Consensus 379 qqaaY~ 384 (849)
T COG3899 379 QQAAYN 384 (849)
T ss_pred HHHHhc
Confidence 776544
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=3e-06 Score=99.83 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=36.7
Q ss_pred CCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcc-ccccee
Q 044931 767 PNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAM-PRLREL 845 (889)
Q Consensus 767 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-p~L~~L 845 (889)
++|+.|+|++|.+.+..++.++.|++|+.|+|++|.+.+ .++..++.+++|+.|+|++|.....+|..++.+ .++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 455555555554444444444555555555555444433 223334444555555555444333344333321 233444
Q ss_pred eccc
Q 044931 846 EIRS 849 (889)
Q Consensus 846 ~l~~ 849 (889)
++.+
T Consensus 521 ~~~~ 524 (623)
T PLN03150 521 NFTD 524 (623)
T ss_pred EecC
Confidence 4444
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.3e-05 Score=88.90 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=110.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc-------------------ccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK-------------------RHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 232 (889)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...-. +.|...+++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR--L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR--LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 679999999999999988664 34567799999999999999877632111 122234455
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
+.+....+.+ ++++++....... .....--+++.....+...|+.+...+..- ....++|+||.+.+.+...+.
T Consensus 94 DAas~rgVDd-IReLIe~a~~~P~--~gr~KVIIIDEah~LT~~A~NALLKtLEEP---P~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 94 DAASNRGVDE-MAALLERAVYAPV--DARFKVYMIDEVHMLTNHAFNAMLKTLEEP---PPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred cccccccHHH-HHHHHHHHHhccc--cCCceEEEEeChhhCCHHHHHHHHHHHHhc---CCCeEEEEEECChhhccchhh
Confidence 4443333322 2333333221110 000000000000112334577777766554 457788888877663543333
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHh
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLLG 375 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g 375 (889)
.....++++.++.++..+.+.+.+. ..+. .-..+....|++.++|.. -|+..+-
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~-~EgI--------~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILG-EERI--------AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3337899999999999999988775 3221 122456678899998855 4555533
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=3.6e-06 Score=99.15 Aligned_cols=91 Identities=24% Similarity=0.292 Sum_probs=71.1
Q ss_pred eeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc-ccccccCCCCCCcEEeecCCCcc-cCchhhhhcccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID-SLPKSVGILPRLETLDVKHTKLR-FLPDSIWKAKKLQHLYLN 662 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~ 662 (889)
.++.|+|++|.+....+..|++|.+|++|+|++|.+. .+|..++.+++|++|+|++|++. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887443338888888888888888886 78888888888888888888877 678888888888888888
Q ss_pred cccCC-CCCCCccc
Q 044931 663 WIHSP-IDGLSLSS 675 (889)
Q Consensus 663 ~~~~~-~~~~~i~~ 675 (889)
+|... ..|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 87633 55655554
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=98.13 E-value=3.6e-05 Score=78.75 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=84.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhh-
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLT- 274 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~- 274 (889)
.+.+.|+|.+|+|||+||+++++. .......+.|+.+... .....++++.+..... .-.++ +|.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~dl----LilDD------i~~~ 103 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAVLENLEQQDL----VCLDD------LQAV 103 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHHHhhcccCCE----EEEeC------hhhh
Confidence 367899999999999999999994 4333445677776421 1111222222211100 00000 111
Q ss_pred --HHhHH-HHHhhhccCCCCCCCcEEEEEcCCC----------CCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCc
Q 044931 275 --QQVWQ-VLRNSLYYSSSKSRDGKIILTTSDE----------NNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRA 341 (889)
Q Consensus 275 --~~~~~-~l~~~l~~~~~~~~gs~iivTTR~~----------~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~ 341 (889)
...|+ .+...+.... ..|+.+||||.+. . +...+... ..+++++++.++.++++.+.++ ...
T Consensus 104 ~~~~~~~~~l~~l~n~~~--~~~~~illits~~~p~~l~~~~~~-L~sRl~~g-~~~~l~~pd~e~~~~iL~~~a~-~~~ 178 (229)
T PRK06893 104 IGNEEWELAIFDLFNRIK--EQGKTLLLISADCSPHALSIKLPD-LASRLTWG-EIYQLNDLTDEQKIIVLQRNAY-QRG 178 (229)
T ss_pred cCChHHHHHHHHHHHHHH--HcCCcEEEEeCCCChHHccccchh-HHHHHhcC-CeeeCCCCCHHHHHHHHHHHHH-HcC
Confidence 12343 2223232220 2355565554433 3 44444443 7899999999999999999987 433
Q ss_pred cccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 342 AESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
. .--++...-|++++.|-.-++..+
T Consensus 179 l--------~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 179 I--------ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred C--------CCCHHHHHHHHHhccCCHHHHHHH
Confidence 2 223566677888887766554433
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=1.4e-06 Score=68.47 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=53.6
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
++|++|.+.+|.+.. +.+..| . .+++|++|++++|.+..++++.|.+|++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~------------i~~~~f-~-~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE------------IPPDSF-S-NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE------------ECTTTT-T-TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc------------cCHHHH-c-CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999998753 455677 6 999999999999999999988999999999999999865
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.11 E-value=1.6e-06 Score=101.65 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=106.8
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC-ChHHhccccCCcEEeCCCCCCcccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL-SDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.+|++|++.|.......|. ..+. . .+|.||.|.+.|-.+... ......++++|+.||+++++++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~----------~kig-~-~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP----------KKIG-T-MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHH----------HHHh-h-hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-
Confidence 4677788877665444442 2233 4 778899999988776522 122566788999999999999988
Q ss_pred cccCCCCCCcEEeecCCCcccCc--hhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCC
Q 044931 625 KSVGILPRLETLDVKHTKLRFLP--DSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWP 702 (889)
Q Consensus 625 ~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 702 (889)
.++++|+|||+|.+++=.+..-+ ..+.+|++|++||++.......+. + . ...++.-..|+
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-------i--i---------~qYlec~~~Lp 250 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-------I--I---------EQYLECGMVLP 250 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-------H--H---------HHHHHhcccCc
Confidence 78999999999999877666433 468889999999998744322221 0 0 01122234578
Q ss_pred CCCeeecccCch--hhHHHHHhhhcccccccce
Q 044931 703 RLIKLGVKCDSQ--MAIEFIINLLVCARTDGLV 733 (889)
Q Consensus 703 ~L~~L~l~~~~~--~~l~~~l~~l~~L~~L~l~ 733 (889)
+||.|++++... +.+...+...++|+.....
T Consensus 251 eLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 251 ELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 999999998885 5555556666667666544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.8e-06 Score=61.08 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=27.4
Q ss_pred cCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCc
Q 044931 608 LNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLP 647 (889)
Q Consensus 608 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp 647 (889)
++|++|++++|.|+.+|+.+++|++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777776654
No 59
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.10 E-value=1e-05 Score=85.76 Aligned_cols=281 Identities=16% Similarity=0.117 Sum_probs=168.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCc-eEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh--
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAK-RAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-- 271 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-- 271 (889)
..|-+.++|.|||||||++-.+.. +...|.. +.++....-.|...+.-.....++....+. ....+.+..++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g-~~~~~~~~~~~~~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG-DSAVDTLVRRIGDR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc-hHHHHHHHHHHhhh
Confidence 468899999999999999999987 5666754 555655555555555555555565544321 111222222222
Q ss_pred -----hhhHHh----HHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChh-hHHHHHHHHhcCCCc
Q 044931 272 -----TLTQQV----WQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEE-ESWKLLLKRALLPRA 341 (889)
Q Consensus 272 -----v~~~~~----~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~-es~~Lf~~~a~~~~~ 341 (889)
.++.+. -..+.-.+-.+ ...-.|+.|+|... ...+. ..+.+..|+.. ++.++|...+. ...
T Consensus 89 r~llvldncehl~~~~a~~i~all~~---~~~~~~~atsre~~----l~~ge-~~~~~~~L~~~d~a~~lf~~ra~-~~~ 159 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGA---CPRLAILATSREAI----LVAGE-VHRRVPSLSLFDEAIELFVCRAV-LVA 159 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHcc---chhhhhHHHhHhhh----ccccc-ccccCCccccCCchhHHHHHHHH-Hhc
Confidence 122111 11111223333 34556899999765 22233 67888888877 79999887764 322
Q ss_pred cccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcccCCChhhHHHHHH-hc---cc-----CCCchhhHHHHHHh
Q 044931 342 AESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSATKGRNFQKWSSVIE-RA---DV-----DKSDGWVSGLLALS 412 (889)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~~w~~~l~-~l---~~-----~~~~~~i~~~l~~S 412 (889)
.. .... ..-...+.+|+++..|.|++|...++..++-.. .+--..++ .+ .. ...+......+.+|
T Consensus 160 ~~--f~l~-~~~~a~v~~icr~ldg~~laielaaarv~sl~~---~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 160 LS--FWLT-DDNAAAVAEICRRLDGIPLAIELAAARVRSLSP---DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred cc--eeec-CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH---HHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 21 1122 455678899999999999999999998876542 22222221 11 11 23345678899999
Q ss_pred hccccccchhhhhhhccCCCCcccchhhhhhhhcccCCcCCCchhHHHHHHHHHHHhcceeeeccccCCCcceeecChhH
Q 044931 413 YQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVL 492 (889)
Q Consensus 413 y~~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv 492 (889)
|.-|....+--|.-++.|...+... ...|.+.|-...-+.-.....+..+++++++..... .....|+.-+-.
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~---~~~a~~Rl~eT~ 306 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDL---LGRARYRLLETG 306 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhh---hhHHHHHHHHHH
Confidence 9999999999999999998876544 233444432211122234455667788888765432 122335555555
Q ss_pred HHhhhhhhh
Q 044931 493 YDVFSPEAA 501 (889)
Q Consensus 493 ~~~~~~~~~ 501 (889)
+.|+..+..
T Consensus 307 r~YalaeL~ 315 (414)
T COG3903 307 RRYALAELH 315 (414)
T ss_pred HHHHHHHHH
Confidence 555555443
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3e-07 Score=91.68 Aligned_cols=153 Identities=19% Similarity=0.095 Sum_probs=109.6
Q ss_pred CCCCCCCCeeecccCch-hhHHHHHhhhcccccccceec-c-----cCC--ccccccccccccccccc---ccccccccc
Q 044931 698 STKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEI-E-----YGE--ARVTTLQELYLRGSIHS---FFDYGIEWN 765 (889)
Q Consensus 698 l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~-~-----l~~--~~~~~L~~L~l~~~~~~---~p~~~~~~~ 765 (889)
+..+++|+.|.+.+.+. +.+...+.+-.+|+.|+++.+ . +.. .+|+.|.+|+|+-+... ... .+.+.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-~V~hi 284 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-AVAHI 284 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-HHhhh
Confidence 45677888889988887 889999999999999999976 1 222 56888999988754311 221 22334
Q ss_pred CCCccEEEeeccC--CCCCCchhh-hcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcc-eecccCcccc
Q 044931 766 YPNLKILTLSMSR--LVYDPMPLL-EELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEE-WTVEKGAMPR 841 (889)
Q Consensus 766 ~~~L~~L~L~~~~--l~~~~~~~l-~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~lp~ 841 (889)
-++|+.|+|++|. +...++..+ ..+|+|..|+|+.|..........+..|+.|++|.++.|..+.. --..+..+|+
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS 364 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence 4889999999984 323344444 57999999999977655544445567889999999998875421 1235678899
Q ss_pred cceeeccccc
Q 044931 842 LRELEIRSCN 851 (889)
Q Consensus 842 L~~L~l~~C~ 851 (889)
|.+|++.+|-
T Consensus 365 l~yLdv~g~v 374 (419)
T KOG2120|consen 365 LVYLDVFGCV 374 (419)
T ss_pred eEEEEecccc
Confidence 9999998864
No 61
>PTZ00202 tuzin; Provisional
Probab=98.06 E-value=1.6e-05 Score=85.00 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCccccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHH
Q 044931 166 YCFEQEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLI 245 (889)
Q Consensus 166 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 245 (889)
....+.++|+||+++...|...|...+....+++.|.|++|+|||||++.+..... + ..++++. . +..+++.
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNp-r--g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDV-R--GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECC-C--CHHHHHH
Confidence 33455689999999999999999765543567999999999999999999997322 1 1333333 3 6789999
Q ss_pred HHHHHhhhh
Q 044931 246 DILQQINDE 254 (889)
Q Consensus 246 ~i~~~l~~~ 254 (889)
.|+.+|+.+
T Consensus 328 ~LL~ALGV~ 336 (550)
T PTZ00202 328 SVVKALGVP 336 (550)
T ss_pred HHHHHcCCC
Confidence 999999973
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=3.6e-05 Score=84.60 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=104.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-------------------cCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-------------------HFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 232 (889)
.+++|-+..++.+...+..+. -...+.++|..|+||||+|+.+.+...-.. .+....++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~--~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR--IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC--CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 568999999999999888653 346789999999999999999987321100 11123334
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
..+....+. -+++++..+...... .... --+.+...-.+...++.+...+... ....++|++|.+.+.+.....
T Consensus 94 ~~~~~~~v~-~ir~i~~~~~~~p~~-~~~k-viIIDEa~~l~~~a~naLLk~lEe~---~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 94 DAASRTKVE-EMREILDNIYYSPSK-SRFK-VYLIDEVHMLSRHSFNALLKTLEEP---PQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred cccccCCHH-HHHHHHHHHhcCccc-CCce-EEEEEChhhcCHHHHHHHHHHHhcC---CCCeEEEEEcCChHhhhHHHH
Confidence 332222222 234444433211100 0000 0000000011234566666666654 456677777755432433333
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
.....+++.+++.++..+.+.+.+. ..+. .-.++.+..|++.++|.|-.+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~-~~g~--------~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILI-KESI--------DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHH
Confidence 3337899999999999998888765 3221 122456678899999988543
No 63
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.02 E-value=8.2e-05 Score=87.06 Aligned_cols=191 Identities=18% Similarity=0.177 Sum_probs=103.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccC---CceEEEEeCCc---ccHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF---AKRAWVRVRSE---AKVRDVLI 245 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~~~~ 245 (889)
++++|++..+..+.+.+... ....+.|+|.+|+||||||+.+++.......+ ...-|+.+... .+...+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~---~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP---FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 56999999999998887543 45679999999999999999998854333333 12345555321 12222211
Q ss_pred HHH---------------HHhhhhh---------c------cc-CCCCHH---HHHHhHh----------hhh--HHhHH
Q 044931 246 DIL---------------QQINDEM---------L------VE-ASSPEE---ELASSLA----------TLT--QQVWQ 279 (889)
Q Consensus 246 ~i~---------------~~l~~~~---------~------~~-~~~~~~---~l~~~l~----------v~~--~~~~~ 279 (889)
.++ ...+... . ++ ...+.. .+...+. .|. ...|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 111 1101000 0 00 111111 1111221 111 23477
Q ss_pred HHHhhhccCCCCCCCcEEEE--EcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHH
Q 044931 280 VLRNSLYYSSSKSRDGKIIL--TTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFK 357 (889)
Q Consensus 280 ~l~~~l~~~~~~~~gs~iiv--TTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~ 357 (889)
.+...+... .+...|+| ||++...+...+......+.+.+++.+|.+.++.+.+. .... ..+ .+..
T Consensus 311 ~ik~~~~~~---~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~-~~~v----~ls----~eal 378 (615)
T TIGR02903 311 YIKKLFEEG---APADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE-KINV----HLA----AGVE 378 (615)
T ss_pred hhhhhcccC---ccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH-HcCC----CCC----HHHH
Confidence 776666665 44444555 67765423333222225678899999999999999775 3211 111 3344
Q ss_pred HHHHHHhCCCchHHHHHhhh
Q 044931 358 ERILKKCGGLPIRIVLLGGL 377 (889)
Q Consensus 358 ~~I~~~c~GlPLai~~~g~~ 377 (889)
..|.+.+..-+-|+..++..
T Consensus 379 ~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 379 ELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHCCCcHHHHHHHHHHH
Confidence 55555555445666655544
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.02 E-value=0.0001 Score=80.87 Aligned_cols=179 Identities=18% Similarity=0.159 Sum_probs=98.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-cCC-ceEEEEeCCccc----------
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-HFA-KRAWVRVRSEAK---------- 239 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~v~~~~~---------- 239 (889)
.+++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+.+. ... .++ ..+.++++...+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP---NLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhcchhhhhcCc
Confidence 56899999999999988765 3356889999999999999999873 322 222 234444432110
Q ss_pred ---------------HHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhh-----HHhHHHHHhhhccCCCCCCCcEEEE
Q 044931 240 ---------------VRDVLIDILQQINDEMLVEASSPEEELASSLATLT-----QQVWQVLRNSLYYSSSKSRDGKIIL 299 (889)
Q Consensus 240 ---------------~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~-----~~~~~~l~~~l~~~~~~~~gs~iiv 299 (889)
..+.++.+++........... ...+-+++ .+....+...+... ...+++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~vlilDe~~~l~~~~~~~L~~~le~~---~~~~~~Il 160 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSAD------YKTILLDNAEALREDAQQALRRIMEQY---SRTCRFII 160 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCC------CcEEEEeCcccCCHHHHHHHHHHHHhc---cCCCeEEE
Confidence 011111111111100000000 00000111 22334455555443 44577888
Q ss_pred EcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 300 TTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 300 TTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
||.....+..........+++.+++.++....+.+.+. ..+. .. -.+....+++.++|.+-.+..
T Consensus 161 ~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~-~~~~----~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 161 ATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAE-AEGV----DY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred EeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHcCCCHHHHHH
Confidence 77543313222322236788999999999999988765 3221 12 245677888888887655433
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=5.1e-05 Score=89.14 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=105.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-------------------cCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-------------------HFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 232 (889)
.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++...-.. .|.-++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r--l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR--LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 579999999999999987653 345568999999999999999987421110 11112344
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
.......+. .+++|...+..... .....--+++.....+.+..+.++..+-.- ....++|++|.+...+...+.
T Consensus 94 dAas~~kVD-dIReLie~v~~~P~--~gk~KViIIDEAh~LT~eAqNALLKtLEEP---P~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 94 DAASRTKVD-DTRELLDNVQYRPS--RGRFKVYLIDEVHMLSRSSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ccccccCHH-HHHHHHHHHHhhhh--cCCcEEEEEechHhcCHHHHHHHHHHHhcc---CCCeEEEEECCCchhchHHHH
Confidence 333222222 23444443321110 000000000000122345566666666554 445666666655442443322
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIV 372 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 372 (889)
.....|++++|+.++..+.+.+.+. ..+. .-..+....|++.++|.|--+.
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~-~EgI--------~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILT-QEQL--------PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHH
Confidence 2337899999999999999988764 2221 2234567789999999885443
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.00 E-value=7.7e-06 Score=81.07 Aligned_cols=51 Identities=35% Similarity=0.572 Sum_probs=34.6
Q ss_pred cccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc
Q 044931 173 NLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH 225 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 225 (889)
.||||+++++++...|........+.+.|+|.+|+|||+|.++++. +....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 4899999999999999533333679999999999999999999998 44444
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=4.8e-05 Score=86.61 Aligned_cols=178 Identities=19% Similarity=0.189 Sum_probs=106.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc-------------------cccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV-------------------KRHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv 232 (889)
.++||.+...+.|..++..+. -...+.++|..|+||||+|+.+.+...- .+.|..++.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr--l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR--LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 679999999999999998764 3468899999999999999988763110 0122233444
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
..+....+.+ .++++..+..... .. ..++. + .+....+.+...+... ..+.++|++|.+...
T Consensus 93 DAAs~~~Vdd-IReli~~~~y~P~--~g------k~KV~IIDEVh~LS~~A~NALLKtLEEP---P~~v~FILaTtd~~k 160 (702)
T PRK14960 93 DAASRTKVED-TRELLDNVPYAPT--QG------RFKVYLIDEVHMLSTHSFNALLKTLEEP---PEHVKFLFATTDPQK 160 (702)
T ss_pred cccccCCHHH-HHHHHHHHhhhhh--cC------CcEEEEEechHhcCHHHHHHHHHHHhcC---CCCcEEEEEECChHh
Confidence 4443333322 2333333211110 00 00111 1 2234455666666554 456677777765442
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIV 372 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 372 (889)
+..........+++++++.++..+.+.+.+. ..+. .-..+....|++.++|-+-.+.
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~-kEgI--------~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILE-KEQI--------AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHH
Confidence 3322222337899999999999999988775 3221 2224556788999999774443
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.97 E-value=2.6e-05 Score=76.65 Aligned_cols=178 Identities=20% Similarity=0.169 Sum_probs=90.9
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIRE--HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.+|||-++-++.+.-++... ....+..+-.||.+|+||||||..+.+ .....|. +++...-... .-+..++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~-~dl~~il~ 97 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKA-GDLAAILT 97 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SC-HHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhH-HHHHHHHH
Confidence 67999999988876655432 112577899999999999999999999 4544442 3333211111 22233333
Q ss_pred Hhhhhhc--ccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCC-----CCCCC-----------cEEEEEcCCCCCccccc
Q 044931 250 QINDEML--VEASSPEEELASSLATLTQQVWQVLRNSLYYSS-----SKSRD-----------GKIILTTSDENNIPLEA 311 (889)
Q Consensus 250 ~l~~~~~--~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~-----~~~~g-----------s~iivTTR~~~~v~~~~ 311 (889)
.+....- -++-.. ++...-+.+..++-++. ..+++ +-|=-|||... +...+
T Consensus 98 ~l~~~~ILFIDEIHR----------lnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~-ls~pL 166 (233)
T PF05496_consen 98 NLKEGDILFIDEIHR----------LNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGL-LSSPL 166 (233)
T ss_dssp T--TT-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCC-TSHCC
T ss_pred hcCCCcEEEEechhh----------ccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccc-cchhH
Confidence 3322111 001111 11122222222222110 00122 22445899876 55444
Q ss_pred ccCC-CeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 312 KAAG-STLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 312 ~~~~-~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.... .+.+++..+.+|-.++..+.+. .-.. +-.++.+.+|+++|.|-|--..-+-
T Consensus 167 rdRFgi~~~l~~Y~~~el~~Iv~r~a~-~l~i--------~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 167 RDRFGIVLRLEFYSEEELAKIVKRSAR-ILNI--------EIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp CTTSSEEEE----THHHHHHHHHHCCH-CTT---------EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred HhhcceecchhcCCHHHHHHHHHHHHH-HhCC--------CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 4432 3458999999999999998876 3221 3446788999999999996544333
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=2.8e-06 Score=95.66 Aligned_cols=109 Identities=19% Similarity=0.162 Sum_probs=74.0
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
..+..+..+.+..|.+.. +...+ . .++.|..|++.+|.+..+.. .+..|.+|++|+|++|.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~------------~~~~l--~-~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK------------ILNHL--S-KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred HHhHhHHhhccchhhhhh------------hhccc--c-cccceeeeeccccchhhccc-chhhhhcchheecccccccc
Confidence 355666666655554421 12223 3 77788888888888776665 47778888888888888887
Q ss_pred cccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCC
Q 044931 623 LPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPID 669 (889)
Q Consensus 623 lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 669 (889)
+. .+..|..|+.|++++|.|+.++ .+..+++|+.+++++|....+
T Consensus 133 i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 133 LE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred cc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhh
Confidence 73 6777777888888888777664 444577777777777664443
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.95 E-value=4.3e-05 Score=85.73 Aligned_cols=180 Identities=14% Similarity=0.168 Sum_probs=93.4
Q ss_pred ccccchhhhHHH---HHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHH
Q 044931 172 INLVGLEEQINN---LVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 172 ~~~vGr~~~~~~---l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 248 (889)
.++||.+..+.. +.+++... ....+.|+|.+|+||||||+.+++. .... |+.++......+-++.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~---~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG---RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVI 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC---CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHH
Confidence 468888877655 77777554 4567889999999999999999983 3332 232222211122223333
Q ss_pred HHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEE--EcCCCC-CcccccccCCCeeeccCCCh
Q 044931 249 QQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIIL--TTSDEN-NIPLEAKAAGSTLHVRRLNE 325 (889)
Q Consensus 249 ~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iiv--TTR~~~-~v~~~~~~~~~~~~l~~L~~ 325 (889)
......... .... --+.+.+.-++....+.+...+. .|..++| ||.+.. .+...+......+++.+++.
T Consensus 82 ~~~~~~~~~-g~~~-vL~IDEi~~l~~~~q~~LL~~le------~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~ 153 (413)
T PRK13342 82 EEARQRRSA-GRRT-ILFIDEIHRFNKAQQDALLPHVE------DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSE 153 (413)
T ss_pred HHHHHhhhc-CCce-EEEEechhhhCHHHHHHHHHHhh------cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCH
Confidence 332211100 0000 00000000112233444444432 2444554 344432 02111222226799999999
Q ss_pred hhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 326 EESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 326 ~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
++.+.++.+.+. .... ... .-..+....|++.|+|-|..+..+-
T Consensus 154 e~i~~lL~~~l~-~~~~---~~i--~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 154 EDIEQLLKRALE-DKER---GLV--ELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHHHHHHHHHH-Hhhc---CCC--CCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999998654 2110 000 1124556788999999987664443
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=4.7e-06 Score=73.87 Aligned_cols=107 Identities=21% Similarity=0.140 Sum_probs=80.5
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
....|...+|++|.+..+|++.-.+.+.+..|+|++|.|..+|..+..++.|+.|+++.|.+...|..+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 66778888999999988888444455688899999999999998888899999999999988888888888888888888
Q ss_pred ccccCCCCCCCccccccccccccccccc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIES 689 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~ 689 (889)
.++....+|.. --.++++-|..+..+.
T Consensus 131 ~~na~~eid~d-l~~s~~~al~~lgnep 157 (177)
T KOG4579|consen 131 PENARAEIDVD-LFYSSLPALIKLGNEP 157 (177)
T ss_pred CCCccccCcHH-HhccccHHHHHhcCCc
Confidence 87665544443 2233444443333333
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=5.6e-07 Score=92.15 Aligned_cols=249 Identities=15% Similarity=0.085 Sum_probs=138.5
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcc----cCCCCh------HHhccccCCc
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVY----KLKLSD------DVIGKLLNLR 611 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~----i~~l~~------~~i~~l~~Lr 611 (889)
...+..+..+.+++|.+...... .+.... . +-+.||+.++++-- ...+|+ ..+-.+++|+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~--------~i~~~L-~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAAR--------AIAKVL-A-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred hcccCceEEEeccCCchhHHHHH--------HHHHHH-h-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 44567788899999987432211 233333 4 66789998888653 113333 2445677999
Q ss_pred EEeCCCCCCc-----ccccccCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccCCCCCCCccccccccccccc
Q 044931 612 YLGLRSTFID-----SLPKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGL 685 (889)
Q Consensus 612 ~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~ 685 (889)
+|+||.|.+. .+-.-|..++.|+.|.|.+|.+...-.. ++. .|.+|..+. .++.-++|+.+. +
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~~~k--------k~~~~~~Lrv~i-~ 164 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELAVNK--------KAASKPKLRVFI-C 164 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHHHHh--------ccCCCcceEEEE-e
Confidence 9999999665 2224566789999999999977633221 111 133333111 111122233221 1
Q ss_pred ccccCCC----ccccCCCCCCCCCeeecccCch-----hhHHHHHhhhcccccccceecccCCccccccccccccc--cc
Q 044931 686 SIESYTP----FRQSDSTKWPRLIKLGVKCDSQ-----MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRG--SI 754 (889)
Q Consensus 686 ~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~-----~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~--~~ 754 (889)
.-++... .....+...+.|+.+.+..+.. ..+...+..+++|+.|++..+.+.. .| .+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-----------egs~~L 233 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-----------EGSVAL 233 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-----------HHHHHH
Confidence 1111100 1122244456666666665542 3455566666666655555431111 01 11
Q ss_pred -cccccccccccCCCccEEEeeccCCCCCCchhh-----hcCCCCCeEEeecCccCCCc---ceeCCCCCCcccEEEccc
Q 044931 755 -HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLL-----EELAHLNILRLYRGAYLGEE---TTCSSGGFPQLRVLKLWN 825 (889)
Q Consensus 755 -~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-----~~L~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 825 (889)
..+| .+ ++|+.|++++|.+.......+ ...|+|+.|.+.+|.+..+. +.......|.|+.|+|++
T Consensus 234 akaL~-----s~-~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 234 AKALS-----SW-PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHhc-----cc-chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 1223 24 788888888888776554443 34788899988887765432 222344588899999988
Q ss_pred cCC
Q 044931 826 LFS 828 (889)
Q Consensus 826 ~~~ 828 (889)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 873
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=5.7e-05 Score=85.78 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=105.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc------------------------cccCC
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV------------------------KRHFA 227 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~~~F~ 227 (889)
.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...- .+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR--LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR--LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 679999999999999998764 3456789999999999999998763211 00122
Q ss_pred ceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCc
Q 044931 228 KRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNI 307 (889)
Q Consensus 228 ~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v 307 (889)
..++++......+.+ ++++++.+..... .... .--+++...-.+...++.+...+..- ..+.++|++|.+.+.+
T Consensus 94 DviEIdAas~~gVDd-IReLie~~~~~P~-~gr~-KViIIDEah~Ls~~AaNALLKTLEEP---P~~v~FILaTtep~kL 167 (700)
T PRK12323 94 DYIEMDAASNRGVDE-MAQLLDKAVYAPT-AGRF-KVYMIDEVHMLTNHAFNAMLKTLEEP---PEHVKFILATTDPQKI 167 (700)
T ss_pred cceEecccccCCHHH-HHHHHHHHHhchh-cCCc-eEEEEEChHhcCHHHHHHHHHhhccC---CCCceEEEEeCChHhh
Confidence 234444433323322 2233333221110 0000 00000000012334566666666543 3456655555543325
Q ss_pred ccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 308 PLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 308 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
...+......+.++.++.++..+.+.+.+. ..+. ....+....|++.++|.|.....+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~-~Egi--------~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILG-EEGI--------AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 443333337899999999999999888764 3221 112345578899999998644433
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.88 E-value=0.00011 Score=80.07 Aligned_cols=181 Identities=18% Similarity=0.191 Sum_probs=99.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe--CCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV--RSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~ 249 (889)
.+++|+++.++.+..++... ..+.+.|+|.+|+||||+|+.+.+... ...+. ..++.+ +...... ...+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHHHHH
Confidence 55899999999999998764 345579999999999999999988321 11222 122332 2222222 2222222
Q ss_pred HhhhhhcccCCCCHH-HHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhH
Q 044931 250 QINDEMLVEASSPEE-ELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEES 328 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~-~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es 328 (889)
++..... ....... -+.+.......+.+..+...+... ...+++|+++.....+..........+++++++.++.
T Consensus 91 ~~~~~~~-~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~---~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 91 EFARTAP-VGGAPFKIIFLDEADNLTSDAQQALRRTMEMY---SQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred HHHhcCC-CCCCCceEEEEeCcccCCHHHHHHHHHHHhcC---CCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 2221110 0000000 000000011123344555555544 4456777776443213222222226789999999999
Q ss_pred HHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 329 WKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 329 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
...+.+.+. ..+. .. ..+....+++.++|.+--+
T Consensus 167 ~~~l~~~~~-~~~~----~i----~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 167 AERLRYIAE-NEGI----EI----TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHHHHHH-HcCC----CC----CHHHHHHHHHHcCCCHHHH
Confidence 999888775 3321 12 2446678888999887553
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.87 E-value=7.5e-07 Score=93.20 Aligned_cols=278 Identities=19% Similarity=0.119 Sum_probs=166.2
Q ss_pred cCCcEEeCCCCC---CcccccccCCCCCCcEEeecCC-CcccCc-hhh-hhcccccccccccccCC---CCCCCcccccc
Q 044931 608 LNLRYLGLRSTF---IDSLPKSVGILPRLETLDVKHT-KLRFLP-DSI-WKAKKLQHLYLNWIHSP---IDGLSLSSLNN 678 (889)
Q Consensus 608 ~~Lr~L~L~~~~---i~~lp~~i~~L~~L~~L~L~~~-~l~~lp-~~i-~~L~~L~~L~l~~~~~~---~~~~~i~~l~~ 678 (889)
-.||.|.|+++. ...+-..-.+++|++.|.+.+| +++.-. ..+ ..+++|++|++..|... .+........+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 368888998873 2344345567899999999999 666321 233 45899999999886521 11111223344
Q ss_pred cccccccccccCCCccc-cCCCCCCCCCeeecccCch---hhHHHHHhhhcccccccceec-------ccCC-ccccccc
Q 044931 679 LQTLWGLSIESYTPFRQ-SDSTKWPRLIKLGVKCDSQ---MAIEFIINLLVCARTDGLVEI-------EYGE-ARVTTLQ 746 (889)
Q Consensus 679 L~~L~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~---~~l~~~l~~l~~L~~L~l~~~-------~l~~-~~~~~L~ 746 (889)
|..|..-.+....+..+ .-...+.+++++...+|.. +.+...-..+..+..+++..| .+.. ..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 44431111111111111 1233455566666666542 344333344444555554443 1122 4566778
Q ss_pred cccccccc--cccccccccccCCCccEEEeeccC-CCCCCchhhh-cCCCCCeEEeecCccCCCc-ceeCCCCCCcccEE
Q 044931 747 ELYLRGSI--HSFFDYGIEWNYPNLKILTLSMSR-LVYDPMPLLE-ELAHLNILRLYRGAYLGEE-TTCSSGGFPQLRVL 821 (889)
Q Consensus 747 ~L~l~~~~--~~~p~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~-~L~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L 821 (889)
.|..+++- +..+-..++..+++|+.|-++.|+ ++...+..++ +++.|+.|++..+....+. +.....+.|.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 88777643 222221334446889999999885 4444445554 6788999988866554333 33344678899999
Q ss_pred EccccCCCcce-----ecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCchhHHHHHhh
Q 044931 822 KLWNLFSLEEW-----TVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMPSTFGEAVES 886 (889)
Q Consensus 822 ~l~~~~~l~~~-----~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp~~~~~~~~~ 886 (889)
.++.|.....- ...-..+..|+.|.+.+|+.++...-..+..++ +|+.+++-+|..-+.+.+..
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~-~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR-NLERIELIDCQDVTKEAISR 446 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc-ccceeeeechhhhhhhhhHH
Confidence 99988765433 233456788999999999988754445567777 89999998888766665543
No 76
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.87 E-value=8.9e-05 Score=78.16 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=75.9
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
...++|-+..+.++++ .+ .+.-.-.||.+|+||||||+.+.. .....| ..++...+-.+-+++++++
T Consensus 29 Q~HLlg~~~~lrr~v~---~~---~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---AG---HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEE 95 (436)
T ss_pred hHhhhCCCchHHHHHh---cC---CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHH
Confidence 3445554444444333 32 567788999999999999999998 444444 3333332222223333332
Q ss_pred hhhhhc-c-cCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEE--EcCCCC-CcccccccCCCeeeccCCCh
Q 044931 251 INDEML-V-EASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIIL--TTSDEN-NIPLEAKAAGSTLHVRRLNE 325 (889)
Q Consensus 251 l~~~~~-~-~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iiv--TTR~~~-~v~~~~~~~~~~~~l~~L~~ 325 (889)
...... . +.-. ..+.++-.+...-+ ..||.. .+|.-|+| ||-++. .+-...-....++++++|+.
T Consensus 96 a~~~~~~gr~tiL----flDEIHRfnK~QQD---~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~ 165 (436)
T COG2256 96 ARKNRLLGRRTIL----FLDEIHRFNKAQQD---ALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSS 165 (436)
T ss_pred HHHHHhcCCceEE----EEehhhhcChhhhh---hhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCH
Confidence 211110 0 0000 00000011122222 345555 66777776 788776 11111222238899999999
Q ss_pred hhHHHHHHHHh
Q 044931 326 EESWKLLLKRA 336 (889)
Q Consensus 326 ~es~~Lf~~~a 336 (889)
+|-.+++.+-+
T Consensus 166 ~di~~~l~ra~ 176 (436)
T COG2256 166 EDIKKLLKRAL 176 (436)
T ss_pred HHHHHHHHHHH
Confidence 99999999843
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00012 Score=83.18 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=104.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCc------------------eEEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAK------------------RAWVR 233 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~------------------~~wv~ 233 (889)
.+++|-+..++.|..++.... -...+.++|.+|+||||+|+.+++...-.+.++. +.++.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~--l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR--LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 568999999999988888764 3456799999999999999999874221111211 33443
Q ss_pred eCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCc
Q 044931 234 VRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNI 307 (889)
Q Consensus 234 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v 307 (889)
.+....+. ..+++...+..... .. ..++. ..+.+.++.+...+... ...+.+|++|.....+
T Consensus 92 ~~~~~~vd-~iR~l~~~~~~~p~--~~------~~kVVIIDEad~ls~~a~naLLk~LEep---~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 92 AASNNSVE-DVRDLREKVLLAPL--RG------GRKVYILDEAHMMSKSAFNALLKTLEEP---PEHVIFILATTEPEKM 159 (504)
T ss_pred ccccCCHH-HHHHHHHHHhhccc--cC------CCeEEEEECccccCHHHHHHHHHHHHhC---CCCEEEEEEcCChhhC
Confidence 33222221 22333222221100 00 00000 11234566677776654 4455666655443314
Q ss_pred ccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 308 PLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 308 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
...+......+++.+++.++..+.+.+.+. ..+. .-..+....|++.++|.+--+
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~~-~egi--------~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLE-AEGR--------EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHH
Confidence 333333337899999999999999998875 3322 112456778999999988544
No 78
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.1e-05 Score=57.94 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=35.0
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
++|++|++++|.|+.+++ .+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence 468999999999999988 8999999999999999998876
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00012 Score=83.42 Aligned_cols=180 Identities=21% Similarity=0.215 Sum_probs=104.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc-------------------cccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV-------------------KRHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv 232 (889)
.++||-+..++.+...+..+. ....+.++|..|+||||+|+.+++...- ...|...+++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r--l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK--VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 569999999999999987653 3456889999999999999998762110 0123334445
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEE-EcCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIIL-TTSDEN 305 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iiv-TTR~~~ 305 (889)
.......+.+ .++++..+..... .. ..++. + .+...++.+...+... ...+++|+ ||....
T Consensus 94 daas~~gvd~-ir~ii~~~~~~p~--~g------~~kViIIDEa~~ls~~a~naLLK~LEep---p~~v~fIL~Ttd~~k 161 (546)
T PRK14957 94 DAASRTGVEE-TKEILDNIQYMPS--QG------RYKVYLIDEVHMLSKQSFNALLKTLEEP---PEYVKFILATTDYHK 161 (546)
T ss_pred ecccccCHHH-HHHHHHHHHhhhh--cC------CcEEEEEechhhccHHHHHHHHHHHhcC---CCCceEEEEECChhh
Confidence 4433333322 2333333221110 00 00011 1 2234566677777664 44565554 544333
Q ss_pred CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHh
Q 044931 306 NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLLG 375 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g 375 (889)
+..........+++++++.++-...+.+.+. ..+. .-.++....|++.++|-+ -|+..+-
T Consensus 162 -il~tI~SRc~~~~f~~Ls~~eI~~~L~~il~-~egi--------~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 162 -IPVTILSRCIQLHLKHISQADIKDQLKIILA-KENI--------NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred -hhhhHHHheeeEEeCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4433333337899999999998888887654 2221 223445667889999865 4554443
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.82 E-value=0.00033 Score=72.01 Aligned_cols=174 Identities=16% Similarity=0.218 Sum_probs=89.4
Q ss_pred cccccchhhh-HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHH
Q 044931 171 EINLVGLEEQ-INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 171 ~~~~vGr~~~-~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
++.++|-... +..+.++.... ..+.+.|+|..|+|||+||+.+++. ....-..+.++.+..... ...++.+
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~---~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~~~~~~ 93 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE---HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---FVPEVLE 93 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---hhHHHHH
Confidence 3455574333 33333333322 3468899999999999999999983 333323456776643211 1111111
Q ss_pred HhhhhhcccCCCCHHHHHHhHhhhhHHhHHH----HHhhhccCCCCCCCcEEEEEcCCCC--------CcccccccCCCe
Q 044931 250 QINDEMLVEASSPEEELASSLATLTQQVWQV----LRNSLYYSSSKSRDGKIILTTSDEN--------NIPLEAKAAGST 317 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~----l~~~l~~~~~~~~gs~iivTTR~~~--------~v~~~~~~~~~~ 317 (889)
.+..... .-.+++.. +-....|+. +....... .+.++|+||+... .+...+... .+
T Consensus 94 ~~~~~dl----liiDdi~~---~~~~~~~~~~lf~l~n~~~e~----g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~ 161 (235)
T PRK08084 94 GMEQLSL----VCIDNIEC---IAGDELWEMAIFDLYNRILES----GRTRLLITGDRPPRQLNLGLPDLASRLDWG-QI 161 (235)
T ss_pred HhhhCCE----EEEeChhh---hcCCHHHHHHHHHHHHHHHHc----CCCeEEEeCCCChHHcCcccHHHHHHHhCC-ce
Confidence 1110000 00000000 000122322 11222222 1247999998653 022233333 78
Q ss_pred eeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 318 LHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 318 ~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
+++++++.++-.+++.+++. ..+. .. -++...-|++++.|-.-++..
T Consensus 162 ~~l~~~~~~~~~~~l~~~a~-~~~~----~l----~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRAR-LRGF----EL----PEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred eeecCCCHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHhhcCCHHHHHH
Confidence 99999999999999988775 3221 22 256677788887766544433
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.82 E-value=6e-06 Score=92.93 Aligned_cols=107 Identities=23% Similarity=0.234 Sum_probs=89.4
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID 621 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~ 621 (889)
+..+.+|..|++.+|.+.. +.... . .+++|++|++++|.|+.+.. +..+..|+.|++++|.|.
T Consensus 91 l~~~~~l~~l~l~~n~i~~-------------i~~~l-~-~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-------------IENLL-S-SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccccceeeeeccccchhh-------------cccch-h-hhhcchheeccccccccccc--hhhccchhhheeccCcch
Confidence 5678899999999998852 22312 4 89999999999999998875 888889999999999999
Q ss_pred ccccccCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccC
Q 044931 622 SLPKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHS 666 (889)
Q Consensus 622 ~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 666 (889)
.++ .+..+++|+.+++++|.+..++.. +..+.+|+.+++.++..
T Consensus 154 ~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 154 DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred hcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 885 666799999999999999888764 68899999999988653
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00019 Score=82.96 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=103.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc-------------------ccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK-------------------RHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 232 (889)
.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+.+...-. +.|...+.+
T Consensus 16 ~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 679999999999999888753 33557899999999999999987632110 112122334
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
.......+.+ ++++++.+..... .....--+++.....+....+.+...+-.- ....++|++|.+.+.+...+.
T Consensus 94 daas~~~Vdd-iR~li~~~~~~p~--~g~~KV~IIDEah~Ls~~a~NALLKtLEEP---p~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 94 DAASRTKVED-TRELLDNVQYAPA--RGRFKVYLIDEVHMLSRHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred cccccCCHHH-HHHHHHHHHhhhh--cCCCEEEEEechHhCCHHHHHHHHHHHHcC---CCCeEEEEecCCccccchHHH
Confidence 3332222222 2344433321110 000000000000022334566666666554 445666665555442543333
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
.....|++++++.++..+.+.+.+. ..+. ....+....|++.++|.+--+..
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~-~e~i--------~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQ-AEQI--------PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3337899999999999999988764 2221 12244567899999997754433
No 83
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=8.9e-05 Score=80.17 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=25.6
Q ss_pred ccCCcEEeCCCCCCcccccccCCCCCCcEEeecCC-CcccCchhhhhcccccccccccc
Q 044931 607 LLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHT-KLRFLPDSIWKAKKLQHLYLNWI 664 (889)
Q Consensus 607 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~ 664 (889)
+.+|++|++++|.++.+|. -..+|++|.+++| +++.+|..+ ..+|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4455555555555555541 1224555555555 455555433 234555555554
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00019 Score=80.97 Aligned_cols=190 Identities=16% Similarity=0.209 Sum_probs=103.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-------------------cCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-------------------HFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 232 (889)
.++||.+.....|...+..+. -...+.++|.+|+||||+|+.+.+...-.. .+...+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~--l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS--ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 569999988888888777653 345688999999999999999977321110 01123344
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
..+....+.++ ++|.+........ .... --+.+.....+.+..+.+...+... .....+|++|.+...+.....
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~~p~~-~~~k-VvIIDE~h~Lt~~a~~~LLk~LE~p---~~~vv~Ilattn~~kl~~~L~ 165 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGYRPME-GKYK-VYIIDEVHMLTKEAFNALLKTLEEP---PSHVVFVLATTNLEKVPPTII 165 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhhChhc-CCeE-EEEEEChHHhHHHHHHHHHHHHHhC---CCcEEEEEEeCChHhhhHHHh
Confidence 44333333322 3343332211100 0000 0000000012233445566666553 334444444433221444443
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhC-CCchHHHHHhhhh
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCG-GLPIRIVLLGGLL 378 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~-GlPLai~~~g~~L 378 (889)
.....+++.+++.++-...+.+.+. ..+. .. ..+....|++.++ +++.|+..+..+.
T Consensus 166 SR~~vv~f~~l~~~el~~~L~~i~~-~egi----~i----~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 166 SRCQVIEFRNISDELIIKRLQEVAE-AEGI----EI----DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred cCcEEEEECCccHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3337899999999999998888775 3221 12 2345667888775 4567777766543
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=97.77 E-value=0.00015 Score=78.47 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=96.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC-ceEEEEeCCcccHHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA-KRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
.+++|.++.++.|.+++..+ ..+.+-++|.+|+||||+|+.+++.. ....|. .++-++.+...... .++++++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG---NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHH
Confidence 56889998888888877654 34457799999999999999998831 122232 12223333332322 33333333
Q ss_pred hhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCC
Q 044931 251 INDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLN 324 (889)
Q Consensus 251 l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~ 324 (889)
+.......... ..++. ++ +.+....+...+... ...+++|+++.....+..........+++++++
T Consensus 88 ~~~~~~~~~~~-----~~kviiiDE~d~lt~~aq~aL~~~lE~~---~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~ 159 (319)
T PLN03025 88 FAQKKVTLPPG-----RHKIVILDEADSMTSGAQQALRRTMEIY---SNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159 (319)
T ss_pred HHhccccCCCC-----CeEEEEEechhhcCHHHHHHHHHHHhcc---cCCceEEEEeCCccccchhHHHhhhcccCCCCC
Confidence 22111000000 00011 11 122233344444333 446777777754431322222222679999999
Q ss_pred hhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch
Q 044931 325 EEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI 369 (889)
Q Consensus 325 ~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 369 (889)
.++-...+...+. ..+. ..+ .+....|++.++|-.-
T Consensus 160 ~~~l~~~L~~i~~-~egi----~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 160 DQEILGRLMKVVE-AEKV----PYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred HHHHHHHHHHHHH-HcCC----CCC----HHHHHHHHHHcCCCHH
Confidence 9999999988875 3321 122 3456788888887653
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00016 Score=80.14 Aligned_cols=179 Identities=15% Similarity=0.093 Sum_probs=98.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc----CC-----------------ceE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH----FA-----------------KRA 230 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~-----------------~~~ 230 (889)
.++||-+..+..|..++..+. -...+.++|..|+||||+|+.+.+. +... +. .++
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIGNEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccCccccCCCcHHHHHHccCCccce
Confidence 569999999999999988763 2356899999999999999999873 2211 00 011
Q ss_pred EEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccc
Q 044931 231 WVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLE 310 (889)
Q Consensus 231 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~ 310 (889)
.+.......+. ..+++...+..... .....--+.+...-.+.+.++.+...+... .....+|.+|...+.+...
T Consensus 94 EIdaas~~gVd-~IReL~e~l~~~p~--~g~~KV~IIDEah~Ls~~A~NALLKtLEEP---p~~viFILaTte~~kI~~T 167 (484)
T PRK14956 94 EIDAASNRGIE-NIRELRDNVKFAPM--GGKYKVYIIDEVHMLTDQSFNALLKTLEEP---PAHIVFILATTEFHKIPET 167 (484)
T ss_pred eechhhcccHH-HHHHHHHHHHhhhh--cCCCEEEEEechhhcCHHHHHHHHHHhhcC---CCceEEEeecCChhhccHH
Confidence 12211111111 12222222211100 000000000000012335677776666543 3355555444443325444
Q ss_pred cccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch
Q 044931 311 AKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI 369 (889)
Q Consensus 311 ~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 369 (889)
.......|.+++++.++-.+.+.+.+. ..+. .-..+....|++.++|.+-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~-~Egi--------~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCK-IENV--------QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCChHH
Confidence 433336799999999999988888765 3221 1124566789999999874
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.76 E-value=0.00026 Score=72.70 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=91.0
Q ss_pred hhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhc
Q 044931 177 LEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEML 256 (889)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 256 (889)
.+..++.+.+++... ..+.|.|+|.+|+|||+||+.+++. ........++++++.-.+. ...++..+.....
T Consensus 22 ~~~~~~~l~~~~~~~---~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~l 93 (226)
T TIGR03420 22 NAELLAALRQLAAGK---GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEVLEGLEQADL 93 (226)
T ss_pred cHHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHHHhhcccCCE
Confidence 455677777776532 4578999999999999999999984 3333345566655433211 1122222111000
Q ss_pred ccCCCCHHHHHHhHhhhhHHhH-HHHHhhhccCCCCCCCcEEEEEcCCCC-C-------cccccccCCCeeeccCCChhh
Q 044931 257 VEASSPEEELASSLATLTQQVW-QVLRNSLYYSSSKSRDGKIILTTSDEN-N-------IPLEAKAAGSTLHVRRLNEEE 327 (889)
Q Consensus 257 ~~~~~~~~~l~~~l~v~~~~~~-~~l~~~l~~~~~~~~gs~iivTTR~~~-~-------v~~~~~~~~~~~~l~~L~~~e 327 (889)
---.+.+.+. ....| +.+...+.... ..+.++|+||+... . +...+.. ...+++.+++.++
T Consensus 94 -LvIDdi~~l~------~~~~~~~~L~~~l~~~~--~~~~~iIits~~~~~~~~~~~~~L~~r~~~-~~~i~l~~l~~~e 163 (226)
T TIGR03420 94 -VCLDDVEAIA------GQPEWQEALFHLYNRVR--EAGGRLLIAGRAAPAQLPLRLPDLRTRLAW-GLVFQLPPLSDEE 163 (226)
T ss_pred -EEEeChhhhc------CChHHHHHHHHHHHHHH--HcCCeEEEECCCChHHCCcccHHHHHHHhc-CeeEecCCCCHHH
Confidence 0000000000 00011 12222222110 12447899888532 0 1111211 2578999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 328 SWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 328 s~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
-..++...+. .... .. -++....|++.+.|.|..+.-+-
T Consensus 164 ~~~~l~~~~~-~~~~----~~----~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 164 KIAALQSRAA-RRGL----QL----PDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHHHH-HcCC----CC----CHHHHHHHHHhccCCHHHHHHHH
Confidence 9999887653 2211 12 23455677778888887766654
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.75 E-value=0.00065 Score=68.83 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=89.7
Q ss_pred ccccch-hhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC--ceEEEEeCCcccHHHHHHHHH
Q 044931 172 INLVGL-EEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA--KRAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 172 ~~~vGr-~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i~ 248 (889)
..++|- .+..-...+.+..........+-|+|..|+|||.|.+++++ .+.+... .+++++ ..++...++
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHH
Confidence 344564 33344455555544332345688999999999999999999 4544332 355663 344555555
Q ss_pred HHhhhhhcccCCCCHHHHHHhHh------------hhhHHhHH----HHHhhhccCCCCCCCcEEEEEcCCCC-Ccc---
Q 044931 249 QQINDEMLVEASSPEEELASSLA------------TLTQQVWQ----VLRNSLYYSSSKSRDGKIILTTSDEN-NIP--- 308 (889)
Q Consensus 249 ~~l~~~~~~~~~~~~~~l~~~l~------------v~~~~~~~----~l~~~l~~~~~~~~gs~iivTTR~~~-~v~--- 308 (889)
..+... ..+++.+.++ +-....|. .+...+.. .|.+||+|++... .+.
T Consensus 81 ~~~~~~-------~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~-----~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 81 DALRDG-------EIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE-----SGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHTT-------SHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH-----TTSEEEEEESS-TTTTTTS-
T ss_pred HHHHcc-------cchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHh-----hCCeEEEEeCCCCccccccC
Confidence 444331 2233444433 11112222 22233333 3668999996543 111
Q ss_pred ----cccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 309 ----LEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 309 ----~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
..+... -++++++.+.++-.+++.+.+. ..+. .--++++.-|++++.+..-.+
T Consensus 149 ~~L~SRl~~G-l~~~l~~pd~~~r~~il~~~a~-~~~~--------~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 149 PDLRSRLSWG-LVVELQPPDDEDRRRILQKKAK-ERGI--------ELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHCS-EEEEE----HHHHHHHHHHHHH-HTT----------S-HHHHHHHHHHTTSSHHHH
T ss_pred hhhhhhHhhc-chhhcCCCCHHHHHHHHHHHHH-HhCC--------CCcHHHHHHHHHhhcCCHHHH
Confidence 122233 6899999999999999999886 3332 222456666777665544333
No 89
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.72 E-value=5.5e-05 Score=77.60 Aligned_cols=54 Identities=26% Similarity=0.233 Sum_probs=45.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc--ccHHHHHHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE--AKVRDVLIDILQ 249 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~ 249 (889)
.-..++|+|.+|+|||||++.+|++.... +|+.++|+.+.+. +++.++++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~ 70 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKG 70 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhcc
Confidence 44789999999999999999999965444 8999999997777 788899888833
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00025 Score=79.65 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=105.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccc------------------ccc-ccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV------------------DVK-RHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------------------~~~-~~F~~~~wv 232 (889)
.++||-+..++.+...+..+. -...+-++|..|+||||+|+.+.+.. .+. ..+.-++.+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 679999998888888887653 34579999999999999999887511 011 112234556
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
+.+....+.+ .++|+....-... .....--+.+.....+....+.+...+..- .+.+++|++|...+.+...+.
T Consensus 91 daas~~~vdd-IR~Iie~~~~~P~--~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP---p~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCYLPI--SSKFKVYIIDEVHMLSNSAFNALLKTLEEP---APHVKFILATTEVKKIPVTII 164 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHhccc--cCCceEEEEeChHhCCHHHHHHHHHHHhCC---CCCeEEEEEeCChHHHHHHHH
Confidence 6554444433 3334433221110 000000000000112234566677776655 456666666643321444333
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchH
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIR 370 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 370 (889)
.....+++++++.++-.+.+.+.+. ..+. .-..+....|++.++|.+-.
T Consensus 165 SRc~~~~f~~l~~~el~~~L~~ia~-~Egi--------~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 165 SRCQRFDLQKIPTDKLVEHLVDIAK-KENI--------EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred HhheeeecccccHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHH
Confidence 3337899999999999999998875 3321 12244567889999887753
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00025 Score=80.79 Aligned_cols=182 Identities=18% Similarity=0.223 Sum_probs=103.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-------------------cCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-------------------HFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 232 (889)
.+++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+.+...-.. .....+++
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r--l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK--LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 679999999999999987653 346789999999999999999876311000 00113344
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
..+....+.+ ++++...+..... .. ..++. + .+...+..+...+... .....+|++|...+.
T Consensus 94 daas~igVd~-IReIi~~~~~~P~--~~------~~KVIIIDEad~Lt~~A~NaLLKtLEEP---p~~tvfIL~Tt~~~K 161 (605)
T PRK05896 94 DAASNNGVDE-IRNIIDNINYLPT--TF------KYKVYIIDEAHMLSTSAWNALLKTLEEP---PKHVVFIFATTEFQK 161 (605)
T ss_pred ccccccCHHH-HHHHHHHHHhchh--hC------CcEEEEEechHhCCHHHHHHHHHHHHhC---CCcEEEEEECCChHh
Confidence 3322222222 2333332221110 00 01111 1 2234566777766654 445666655544331
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHhh
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLLGG 376 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~ 376 (889)
+..........+++.+++.++....+...+. ..+. ..+ .+.+..+++.++|.+ .|+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~-kegi----~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAK-KEKI----KIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHH-HcCC----CCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4332232237899999999999988888764 3221 122 345678899999865 45444443
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00026 Score=81.75 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=102.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc------------------------cccCC
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV------------------------KRHFA 227 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~~~F~ 227 (889)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+...- .+.+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r--l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR--LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 678998888888988888764 3467899999999999999998542100 01111
Q ss_pred ceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEc
Q 044931 228 KRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTT 301 (889)
Q Consensus 228 ~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTT 301 (889)
-.++++......+.+ .+++++.+..... .. ..++. + .+.+.++.+...+..- ....++|++|
T Consensus 94 D~~eldaas~~~Vd~-iReli~~~~~~p~--~g------~~KV~IIDEvh~Ls~~a~NaLLKtLEEP---P~~~~fIL~T 161 (618)
T PRK14951 94 DYTELDAASNRGVDE-VQQLLEQAVYKPV--QG------RFKVFMIDEVHMLTNTAFNAMLKTLEEP---PEYLKFVLAT 161 (618)
T ss_pred ceeecCcccccCHHH-HHHHHHHHHhCcc--cC------CceEEEEEChhhCCHHHHHHHHHhcccC---CCCeEEEEEE
Confidence 233444333323322 2333333211110 00 00111 2 2234566666666554 4456666555
Q ss_pred CCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 044931 302 SDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIV 372 (889)
Q Consensus 302 R~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 372 (889)
.+.+.+..........++++.++.++-.+.+.+.+. ..+. .-..+....|++.++|.+--+.
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~-~egi--------~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA-AENV--------PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHH
Confidence 443314433333337899999999999999988775 3221 1124556788889988774443
No 93
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.70 E-value=3.6e-05 Score=82.18 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=49.0
Q ss_pred HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc--cHHHHHHHHH
Q 044931 183 NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA--KVRDVLIDIL 248 (889)
Q Consensus 183 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~ 248 (889)
++++++..-. .-...+|+|.+|+||||||++||++.... +|+.++||.+.+.. ++.++++.|.
T Consensus 158 rvID~l~PIG--kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 158 RIIDLIAPIG--KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred eeeeeecccc--cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4455554432 34678999999999999999999964444 89999999999887 6777777775
No 94
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=1.1e-05 Score=80.87 Aligned_cols=226 Identities=19% Similarity=0.171 Sum_probs=127.1
Q ss_pred CceeeeEEEecCcccCCCCh-HHhc-cccCCcEEeCCCCCCccc---ccccCCCCCCcEEeecCCCcccCchhh-hhccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSD-DVIG-KLLNLRYLGLRSTFIDSL---PKSVGILPRLETLDVKHTKLRFLPDSI-WKAKK 655 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~-~~i~-~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~ 655 (889)
..+-+..|-+.++.|...-. ..|+ .+.+++.|||.+|.|+.. -..+.+|+.|++|+|+.|.+...-..+ ..+.+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 33445567777877764322 1343 567999999999988744 344668999999999999665321111 34668
Q ss_pred ccccccccccCC--CCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccce
Q 044931 656 LQHLYLNWIHSP--IDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLV 733 (889)
Q Consensus 656 L~~L~l~~~~~~--~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~ 733 (889)
|+.|.++++... ........++.+++|+ .+ ..++|.+.+.....+
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelH---mS------------~N~~rq~n~Dd~c~e------------------ 169 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELH---MS------------DNSLRQLNLDDNCIE------------------ 169 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhh---hc------------cchhhhhcccccccc------------------
Confidence 888888875421 1111222222223221 11 112222222221110
Q ss_pred ecccCCcccccccccccccccccccc--ccccccCCCccEEEeeccCCCCC-CchhhhcCCCCCeEEeecCccCCCccee
Q 044931 734 EIEYGEARVTTLQELYLRGSIHSFFD--YGIEWNYPNLKILTLSMSRLVYD-PMPLLEELAHLNILRLYRGAYLGEETTC 810 (889)
Q Consensus 734 ~~~l~~~~~~~L~~L~l~~~~~~~p~--~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~L~~L~~L~L~~~~~~~~~~~~ 810 (889)
...+.+.+|.+.++....-. .-++..+|++..+.+..|.+... .-.....+|.+-.|.|+.+++....-..
T Consensus 170 ------~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD 243 (418)
T KOG2982|consen 170 ------DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVD 243 (418)
T ss_pred ------ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHH
Confidence 01122333333332211000 01223348999999998876532 2223456788888899888776655555
Q ss_pred CCCCCCcccEEEccccCCCcceecc------cCcccccceee
Q 044931 811 SSGGFPQLRVLKLWNLFSLEEWTVE------KGAMPRLRELE 846 (889)
Q Consensus 811 ~~~~~~~L~~L~l~~~~~l~~~~~~------~~~lp~L~~L~ 846 (889)
...+||+|..|.+++++.++.+... ++.+++++.|+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 6788999999999999877655332 34556666554
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00024 Score=81.91 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=102.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc-------------------ccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK-------------------RHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 232 (889)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-. +.|...+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r--l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR--LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 679999999999999998763 34678999999999999999887631100 112122344
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
.......+. .+++++......... . ..++. ++ +....+.+...+..- ....++|++|.+...
T Consensus 94 daAs~~gVd-~IRelle~a~~~P~~-g-------k~KVIIIDEad~Ls~~A~NALLKtLEEP---p~~v~fILaTtd~~k 161 (709)
T PRK08691 94 DAASNTGID-NIREVLENAQYAPTA-G-------KYKVYIIDEVHMLSKSAFNAMLKTLEEP---PEHVKFILATTDPHK 161 (709)
T ss_pred eccccCCHH-HHHHHHHHHHhhhhh-C-------CcEEEEEECccccCHHHHHHHHHHHHhC---CCCcEEEEEeCCccc
Confidence 433333332 233343322111000 0 00011 11 123344555655443 345667777655442
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
+..........++++.++.++-...+.+.+. ..+. .-..+....|++.++|.+.-+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~-kEgi--------~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLD-SEKI--------AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHH-HcCC--------CcCHHHHHHHHHHhCCCHHHH
Confidence 4333222226688899999999999988775 3321 122456778999999888433
No 96
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00063 Score=74.21 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=101.1
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc-------------------------
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH------------------------- 225 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------------------------- 225 (889)
..++||-++.++.+.+.+..+. -...+-++|..|+||||+|..+.+..-=...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r--l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i 95 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR--LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI 95 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH
Confidence 3679999999999999988864 3457999999999999999887652100000
Q ss_pred ----CCceEEEEeC--C-------cccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hhh-----HHhHHHHHhhhc
Q 044931 226 ----FAKRAWVRVR--S-------EAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TLT-----QQVWQVLRNSLY 286 (889)
Q Consensus 226 ----F~~~~wv~v~--~-------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~~-----~~~~~~l~~~l~ 286 (889)
..-..||.-. . ...+.+ .+++.+.+...... . ..++. |++ ......+...+.
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~--~------~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAE--G------GWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCccc--C------CCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0011122110 0 000111 11222211111000 0 00000 222 244556666665
Q ss_pred cCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCC
Q 044931 287 YSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGG 366 (889)
Q Consensus 287 ~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 366 (889)
.- ..++.+|++|.+.+.+..........+.+.+++.++..+++..... .. + .+....+++.++|
T Consensus 167 ep---p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-~~----------~--~~~~~~l~~~s~G 230 (365)
T PRK07471 167 EP---PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-DL----------P--DDPRAALAALAEG 230 (365)
T ss_pred cC---CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-cC----------C--HHHHHHHHHHcCC
Confidence 54 4567778887776524333333337899999999999999987643 11 1 1122678999999
Q ss_pred CchHHHHHh
Q 044931 367 LPIRIVLLG 375 (889)
Q Consensus 367 lPLai~~~g 375 (889)
.|+....+.
T Consensus 231 sp~~Al~ll 239 (365)
T PRK07471 231 SVGRALRLA 239 (365)
T ss_pred CHHHHHHHh
Confidence 998665554
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00062 Score=74.95 Aligned_cols=184 Identities=13% Similarity=0.109 Sum_probs=102.3
Q ss_pred ccccchhhhHHHHHHHHhccCC-------CCceEEEEECCCCCcHHHHHHHHhcccccc------------------ccC
Q 044931 172 INLVGLEEQINNLVSLLIREHN-------HNSQVIAIVGEAGSGKTTLTRSVYDRVDVK------------------RHF 226 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F 226 (889)
.+++|-+..++.|.+++..... .-...+.++|..|+|||++|+.+.+...-. ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4689999999999999987531 124678899999999999999986521000 001
Q ss_pred CceEEEEeC-CcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC
Q 044931 227 AKRAWVRVR-SEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN 305 (889)
Q Consensus 227 ~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~ 305 (889)
+-..++... ....+.+ ++++.+.+...... .... --+.+...-.+....+.+...+... .++..+|++|.+..
T Consensus 85 pD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~-~~~k-ViiIDead~m~~~aanaLLk~LEep---~~~~~fIL~a~~~~ 158 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE-VRELVTIAARRPST-GRWR-IVVIEDADRLTERAANALLKAVEEP---PPRTVWLLCAPSPE 158 (394)
T ss_pred CCEEEeccccccCCHHH-HHHHHHHHHhCccc-CCcE-EEEEechhhcCHHHHHHHHHHhhcC---CCCCeEEEEECChH
Confidence 112233221 1122222 23444433321110 0000 0000000011223345555555444 45666777766654
Q ss_pred CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 306 NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.+..........+.+++++.++..+.+.+... . + .+.+..++..++|.|.....+.
T Consensus 159 ~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----------~--~--~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 159 DVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----------V--D--PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----------C--C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 35443333337899999999999988875432 0 1 3446788999999997655443
No 98
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=6.2e-06 Score=73.13 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=82.5
Q ss_pred CceeeeEEEecCcccCCCCh--HHhccccCCcEEeCCCCCCcccccccCC-CCCCcEEeecCCCcccCchhhhhcccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSD--DVIGKLLNLRYLGLRSTFIDSLPKSVGI-LPRLETLDVKHTKLRFLPDSIWKAKKLQH 658 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~--~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 658 (889)
.-+.+..++|+.|.+..++. ..+....+|...+|++|.++.+|+.+.. .+-+++|++.+|.|+.+|.++..++.|+.
T Consensus 25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 34456678999998775554 2456677888899999999999987764 45899999999999999999999999999
Q ss_pred cccccccCCCCCCCcccccccccc
Q 044931 659 LYLNWIHSPIDGLSLSSLNNLQTL 682 (889)
Q Consensus 659 L~l~~~~~~~~~~~i~~l~~L~~L 682 (889)
|+++.|.....|..|..|.+|-.|
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred cccccCccccchHHHHHHHhHHHh
Confidence 999999888888877766555554
No 99
>PRK04195 replication factor C large subunit; Provisional
Probab=97.63 E-value=0.0013 Score=75.31 Aligned_cols=243 Identities=12% Similarity=0.098 Sum_probs=127.7
Q ss_pred ccccchhhhHHHHHHHHhccCC-CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHN-HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
.+++|.++.++.+.+|+..-.. ...+.+.|+|.+|+||||+|+.++++ . .|+ .+-++.+...+. ..+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~-~ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE-VIELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEcccccccH-HHHHHHHHH
Confidence 5699999999999999975321 13688999999999999999999994 2 133 233344443222 233333332
Q ss_pred hhhhhcccCCCCHHHHHHhHh-hh---------hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCccc-ccccCCCeee
Q 044931 251 INDEMLVEASSPEEELASSLA-TL---------TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPL-EAKAAGSTLH 319 (889)
Q Consensus 251 l~~~~~~~~~~~~~~l~~~l~-v~---------~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~-~~~~~~~~~~ 319 (889)
...... -.. -..++- ++ +...+..+...+... +..||+|+.+...... ........++
T Consensus 88 ~~~~~s---l~~---~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-----~~~iIli~n~~~~~~~k~Lrsr~~~I~ 156 (482)
T PRK04195 88 AATSGS---LFG---ARRKLILLDEVDGIHGNEDRGGARAILELIKKA-----KQPIILTANDPYDPSLRELRNACLMIE 156 (482)
T ss_pred hhccCc---ccC---CCCeEEEEecCcccccccchhHHHHHHHHHHcC-----CCCEEEeccCccccchhhHhccceEEE
Confidence 221110 000 000000 11 112244455544432 3446666654331222 2222236789
Q ss_pred ccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcc-cCCChhhHHHHHHhccc
Q 044931 320 VRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSAT-KGRNFQKWSSVIERADV 398 (889)
Q Consensus 320 l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~-~~~~~~~w~~~l~~l~~ 398 (889)
+.+++.++....+.+.+. ..+. .++ .+....|++.++|-.-.+...-..+... ..-+......+..
T Consensus 157 f~~~~~~~i~~~L~~i~~-~egi----~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~---- 223 (482)
T PRK04195 157 FKRLSTRSIVPVLKRICR-KEGI----ECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR---- 223 (482)
T ss_pred ecCCCHHHHHHHHHHHHH-HcCC----CCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc----
Confidence 999999999998888775 3321 222 4567888999988765554333333221 1111222222221
Q ss_pred CCCchhhHHHHHHhhc-cccccchhhhhhhccCCCCcccchhhhhhhhcccCCcC
Q 044931 399 DKSDGWVSGLLALSYQ-ELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVA 452 (889)
Q Consensus 399 ~~~~~~i~~~l~~Sy~-~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~ 452 (889)
......++.++..-+. .-+......+..+ .++. ..+-.|+.+.+..
T Consensus 224 ~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~ 270 (482)
T PRK04195 224 RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPK 270 (482)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhcccc
Confidence 1223456666665554 2222222222221 1233 3466788888875
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00032 Score=80.02 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=102.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc-------------------ccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK-------------------RHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 232 (889)
.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-. +.|.-++.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 569999999999999998764 34567899999999999999887632110 122224445
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
..+....+.++ ++++..+..... .. ..++. + .+.+..+.+...+..- ...+++|++|-+...
T Consensus 94 daas~~~v~~i-R~l~~~~~~~p~--~~------~~kV~iIDE~~~ls~~a~naLLk~LEep---p~~~~fIlattd~~k 161 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYAPT--KG------RFKVYLIDEVHMLSGHSFNALLKTLEEP---PSHVKFILATTDHHK 161 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhccc--cC------CcEEEEEEChHhcCHHHHHHHHHHHhcc---CCCeEEEEEECChHh
Confidence 54444344332 344443322111 00 00111 1 1234455666666554 456666665544331
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
+..........+++++++.++-...+.+.+. ..+. .-..+....|++.++|.+--+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~-~egi--------~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLK-EENV--------EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCcHHHH
Confidence 4333333336789999999988877776654 2221 112344567888888877443
No 101
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.00048 Score=78.04 Aligned_cols=175 Identities=21% Similarity=0.199 Sum_probs=102.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc-----------------------CCc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-----------------------FAK 228 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----------------------F~~ 228 (889)
.++||-+..+..+...+..+. -...+-++|..|+||||+|+.+++...-... ...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r--i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR--LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 568999999999888777653 3467899999999999999999873211100 011
Q ss_pred eEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEE-Ec
Q 044931 229 RAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIIL-TT 301 (889)
Q Consensus 229 ~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iiv-TT 301 (889)
++.+.......+.+ +++++........ .. ..++. + .+...|+.+...+... ...+++|+ ||
T Consensus 99 v~eidaas~~~vd~-Ir~iie~a~~~P~--~~------~~KVvIIDEa~~Ls~~a~naLLk~LEep---p~~~vfI~aTt 166 (507)
T PRK06645 99 IIEIDAASKTSVDD-IRRIIESAEYKPL--QG------KHKIFIIDEVHMLSKGAFNALLKTLEEP---PPHIIFIFATT 166 (507)
T ss_pred EEEeeccCCCCHHH-HHHHHHHHHhccc--cC------CcEEEEEEChhhcCHHHHHHHHHHHhhc---CCCEEEEEEeC
Confidence 22333333223322 2223332211100 00 00010 1 1235677777777665 45666655 44
Q ss_pred CCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchH
Q 044931 302 SDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIR 370 (889)
Q Consensus 302 R~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 370 (889)
+... +..........+++++++.++..+.+.+.+. ..+. .-..+....|++.++|.+--
T Consensus 167 e~~k-I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~-~egi--------~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 167 EVQK-IPATIISRCQRYDLRRLSFEEIFKLLEYITK-QENL--------KTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred ChHH-hhHHHHhcceEEEccCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHH
Confidence 4444 5443333336799999999999999998886 3321 11234556788999887643
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0015 Score=70.90 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=100.8
Q ss_pred ccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc----CCceEEEEeCCcccHHHHHH
Q 044931 170 QEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH----FAKRAWVRVRSEAKVRDVLI 245 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~ 245 (889)
....+||-++....+...+..+. ....+.|+|..|+||||+|..+.+. +-.. +.... ....+......+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr--l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK--LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC--CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccc---cCCCCCCCHHHH
Confidence 34679999999999999998764 4567999999999999999988763 2211 11000 000000001111
Q ss_pred HHHHH-------hhhhh-cc----cCCCCHHHHH---HhHh------------hhh-----HHhHHHHHhhhccCCCCCC
Q 044931 246 DILQQ-------INDEM-LV----EASSPEEELA---SSLA------------TLT-----QQVWQVLRNSLYYSSSKSR 293 (889)
Q Consensus 246 ~i~~~-------l~~~~-~~----~~~~~~~~l~---~~l~------------v~~-----~~~~~~l~~~l~~~~~~~~ 293 (889)
.|... +.... .. ......+++. +.+. |++ ....+.+...+..- ..
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp---p~ 170 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP---PA 170 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC---CC
Confidence 11111 00000 00 0111122221 1111 222 23445566666543 34
Q ss_pred CcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 294 DGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 294 gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
+..+|++|.....+..........+++.+++.++..+++.+... .. .-..+....|++.++|.|.....
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~-~~----------~~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS-SQ----------GSDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc-cc----------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 45555555444324433333337899999999999999987432 11 11133467889999999986654
Q ss_pred Hh
Q 044931 374 LG 375 (889)
Q Consensus 374 ~g 375 (889)
+.
T Consensus 240 ll 241 (351)
T PRK09112 240 LL 241 (351)
T ss_pred HH
Confidence 44
No 103
>PF13173 AAA_14: AAA domain
Probab=97.61 E-value=0.00017 Score=66.55 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=68.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhccc-CCCCHHHHHHhHhhhh
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVE-ASSPEEELASSLATLT 274 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l~v~~ 274 (889)
-+++.|.|..|+|||||+++++++.. ....+++++..+.........++.+.+.....++ .-.-.++ +..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDE------iq~ 72 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDE------IQY 72 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEeh------hhh
Confidence 37899999999999999999998422 3356788877766443221111111111110000 0000000 222
Q ss_pred HHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCccc-----ccccCCCeeeccCCChhhH
Q 044931 275 QQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPL-----EAKAAGSTLHVRRLNEEES 328 (889)
Q Consensus 275 ~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~-----~~~~~~~~~~l~~L~~~es 328 (889)
...|......+-+. .+..+|++|+.+.. ... ...+....+++.||+..|-
T Consensus 73 ~~~~~~~lk~l~d~---~~~~~ii~tgS~~~-~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 73 LPDWEDALKFLVDN---GPNIKIILTGSSSS-LLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccHHHHHHHHHHh---ccCceEEEEccchH-HHhhcccccCCCeEEEEEECCCCHHHh
Confidence 24577766666665 55689999998765 332 2222225688999988773
No 104
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=5.7e-06 Score=92.20 Aligned_cols=184 Identities=18% Similarity=0.166 Sum_probs=109.5
Q ss_pred ccccCCCCCCcEEeecCCCcccCchhhhhc-ccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCC
Q 044931 624 PKSVGILPRLETLDVKHTKLRFLPDSIWKA-KKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWP 702 (889)
Q Consensus 624 p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L-~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 702 (889)
|-+|..+..|++|.|++|.+... .++..+ ..|++|...+ .+..|+.+ -... .+ .+..-..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~-----------Sl~Al~~v---~asc-gg-d~~ns~~Wn 164 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHN-----------SLDALRHV---FASC-GG-DISNSPVWN 164 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhc-----------cHHHHHHH---HHHh-cc-ccccchhhh
Confidence 55666677888888888877653 233332 2244443322 11222222 1100 00 000001122
Q ss_pred CCCeeecccCchhhHHHHHhhhcccccccceecc---cCC-ccccccccccccc-cccccccccccccCCCccEEEeecc
Q 044931 703 RLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIE---YGE-ARVTTLQELYLRG-SIHSFFDYGIEWNYPNLKILTLSMS 777 (889)
Q Consensus 703 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~---l~~-~~~~~L~~L~l~~-~~~~~p~~~~~~~~~~L~~L~L~~~ 777 (889)
.|...+.+++....+..++.-++.|++|+|+.+. ... ..+++|+.|+|+. ++..+|...... -.|..|.|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g--c~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVG--CKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhh--hhheeeeeccc
Confidence 3333444444446666777778888888888762 223 5678888888874 556677522222 24999999999
Q ss_pred CCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCC
Q 044931 778 RLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFS 828 (889)
Q Consensus 778 ~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 828 (889)
.++ .+..+.+|.+|+.|+++.|.+.+..-...+..+..|+.|.|.+|+.
T Consensus 243 ~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 875 4667788999999999988776533233455677888999999884
No 105
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.60 E-value=0.00056 Score=75.64 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=103.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc--------------------ccCCceEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK--------------------RHFAKRAW 231 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~w 231 (889)
.++||.++.++.+.+++..+. -...+-++|.+|+||||+|+.+.....-. .+++ .++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~--~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~ 90 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR--IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIE 90 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEE
Confidence 568999999999999997653 34678899999999999998887631100 1233 234
Q ss_pred EEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC
Q 044931 232 VRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN 305 (889)
Q Consensus 232 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~ 305 (889)
+......... -+++++..+..... .. ..++. ++ +....+.+...+... ...+.+|++|.+..
T Consensus 91 ~~~~~~~~~~-~~~~l~~~~~~~p~--~~------~~~vviidea~~l~~~~~~~Ll~~le~~---~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 91 IDAASNNGVD-DIREILDNVKYAPS--SG------KYKVYIIDEVHMLSKSAFNALLKTLEEP---PEHVVFILATTEPH 158 (355)
T ss_pred eeccccCCHH-HHHHHHHHHhcCcc--cC------CceEEEEeChhhcCHHHHHHHHHHHhCC---ccceeEEEEeCCHH
Confidence 4333222221 22334333321110 00 00000 11 223455566666544 44666677765433
Q ss_pred CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 306 NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.+..........+++.++++++..+.+...+. ..+. .. -.+.+..+++.++|.|..+....
T Consensus 159 ~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~-~~g~----~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 159 KIPATILSRCQRFDFKRIPLEDIVERLKKILD-KEGI----KI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 12222222226788999999999999888775 3221 11 24667788999999886654443
No 106
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.59 E-value=0.00061 Score=70.45 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=74.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhH---h
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSL---A 271 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l---~ 271 (889)
.+..+.+||.+|.||||||+.+.+... .+ ...||..|....-..-.++|+++-..... +.++. .
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~ife~aq~~~~---------l~krkTilF 227 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRDIFEQAQNEKS---------LTKRKTILF 227 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHHHHHHHHHHHh---------hhcceeEEE
Confidence 677888999999999999999998433 32 25577766554444444455444322211 11111 1
Q ss_pred hhhHHhHHH--HHhhhccCCCCCCCcEEEE--EcCCCCCccc--ccccCCCeeeccCCChhhHHHHHHH
Q 044931 272 TLTQQVWQV--LRNSLYYSSSKSRDGKIIL--TTSDENNIPL--EAKAAGSTLHVRRLNEEESWKLLLK 334 (889)
Q Consensus 272 v~~~~~~~~--l~~~l~~~~~~~~gs~iiv--TTR~~~~v~~--~~~~~~~~~~l~~L~~~es~~Lf~~ 334 (889)
++...-+.. -...||.. .+|+-++| ||.++. ... ..-....++.|+.|..++-..++.+
T Consensus 228 iDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPS-Fqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 228 IDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPS-FQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred eHHhhhhhhhhhhccccee---ccCceEEEecccCCCc-cchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 222211221 12356776 67887776 788776 321 1112227899999999999998887
No 107
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.57 E-value=0.0018 Score=75.38 Aligned_cols=285 Identities=13% Similarity=0.156 Sum_probs=146.5
Q ss_pred ccccchhhhHHHHHHHHhccC--CCCceEEEEECCCCCcHHHHHHHHhccccc---cccCC--ceEEEEeCCcccHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREH--NHNSQVIAIVGEAGSGKTTLTRSVYDRVDV---KRHFA--KRAWVRVRSEAKVRDVL 244 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~v~~~~~~~~~~ 244 (889)
+.++|||+++++|...|...- .....++-|+|.+|.|||+.++.|.+.... +...+ .+++|......+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 678999999999999887531 113367889999999999999999874321 11222 24566666666788889
Q ss_pred HHHHHHhhhhhcccCCCCHH---HHHHhHh----------hhhHHhH-----HHHHhhhccCCCCCCCcEEEE--EcCCC
Q 044931 245 IDILQQINDEMLVEASSPEE---ELASSLA----------TLTQQVW-----QVLRNSLYYSSSKSRDGKIIL--TTSDE 304 (889)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~---~l~~~l~----------v~~~~~~-----~~l~~~l~~~~~~~~gs~iiv--TTR~~ 304 (889)
..|++++.....+......+ .+...+. +++.+.+ +.|...+.... ..+++|+| +|...
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCch
Confidence 99998885443221111111 1221110 2222211 11222222110 24566555 33321
Q ss_pred C-------CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 044931 305 N-------NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGL 377 (889)
Q Consensus 305 ~-------~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~ 377 (889)
+ .+...+.. ..+...+.+.++-.+++..++. ... ...++..++-+|+.++..-|-.-.||.++-.+
T Consensus 913 DLperLdPRLRSRLg~--eeIvF~PYTaEQL~dILk~RAe-~A~----gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAF--GRLVFSPYKGDEIEKIIKERLE-NCK----EIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred hcchhhhhhhhhcccc--ccccCCCCCHHHHHHHHHHHHH-hCC----CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 1 01122221 3466799999999999999986 321 23332445555555555555566666666554
Q ss_pred hhcccCC--ChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhccC-C--CCcccchhhhhhhh--ccc--
Q 044931 378 LSATKGR--NFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMWFF-P--RAFEIPVRRLICLW--CTE-- 448 (889)
Q Consensus 378 L~~~~~~--~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~F-p--~~~~i~~~~Li~~w--~a~-- 448 (889)
...+... +.+.-..+.+.+. ...+.-....||.+.|-.++.+... - ....++...+.... +++
T Consensus 986 gEikegskVT~eHVrkAleeiE--------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~ 1057 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQLF--------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETS 1057 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHHH--------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhh
Confidence 4332211 1233333332221 1122333457888866444323221 1 12234544444322 222
Q ss_pred ----CCcCCCchhHHHHHHHHHHHhcceeee
Q 044931 449 ----PFVAPIDTDLAETYFEELVIRNLIHVT 475 (889)
Q Consensus 449 ----g~i~~~~e~~~~~~l~~L~~rsll~~~ 475 (889)
|.. ...+ ...+++.+|...++|-..
T Consensus 1058 Gk~iGv~-plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1058 GKYIGMC-SNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhhcCCC-CcHH-HHHHHHHHHHhcCeEEec
Confidence 211 1222 556666777777776543
No 108
>PRK08727 hypothetical protein; Validated
Probab=97.57 E-value=0.00073 Score=69.35 Aligned_cols=152 Identities=17% Similarity=0.168 Sum_probs=80.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhH
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQ 275 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~ 275 (889)
...+.|+|..|+|||+||+++++. .......+.|+++.+.. ..+.++++.+.....- -.+++ +.+..+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~~---~~~~~~~~~l~~~dlL----iIDDi-~~l~~~-- 108 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAAA---GRLRDALEALEGRSLV----ALDGL-ESIAGQ-- 108 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHhh---hhHHHHHHHHhcCCEE----EEeCc-ccccCC--
Confidence 356999999999999999999883 43333456677654321 1222233332211110 00000 000000
Q ss_pred HhHH-HHHhhhccCCCCCCCcEEEEEcCCCCC--------cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCC
Q 044931 276 QVWQ-VLRNSLYYSSSKSRDGKIILTTSDENN--------IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDG 346 (889)
Q Consensus 276 ~~~~-~l~~~l~~~~~~~~gs~iivTTR~~~~--------v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~ 346 (889)
..|. .+...+.... .+|..||+||+.... +...+... ..+++++++.++-.+++.+++. ..+.
T Consensus 109 ~~~~~~lf~l~n~~~--~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~~~~iL~~~a~-~~~l---- 180 (233)
T PRK08727 109 REDEVALFDFHNRAR--AAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVARAAVLRERAQ-RRGL---- 180 (233)
T ss_pred hHHHHHHHHHHHHHH--HcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHHHHHHHHHHHH-HcCC----
Confidence 1121 1111111110 236679999985330 11122222 6899999999999999999876 3221
Q ss_pred CCCChhHHHHHHHHHHHhCCCchHH
Q 044931 347 LFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 347 ~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
.. -++...-|++.+.|-.-++
T Consensus 181 ~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 181 AL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CC----CHHHHHHHHHhCCCCHHHH
Confidence 22 2455667777777655443
No 109
>PRK09087 hypothetical protein; Validated
Probab=97.55 E-value=0.0015 Score=66.56 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=79.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhc--ccCCCCHHHHHHhHhhh
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEML--VEASSPEEELASSLATL 273 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~l~~~l~v~ 273 (889)
-+.+.|+|..|+|||+|++.+++.. ...+++.. .+..+++..+....- ++.... -.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~~~~~l~iDDi~~~---------~~ 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAAAEGPVLIEDIDAG---------GF 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhhhcCeEEEECCCCC---------CC
Confidence 3679999999999999999998742 12244332 122222222211000 000000 01
Q ss_pred hHHhHHHHHhhhccCCCCCCCcEEEEEcCC---------CCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCcccc
Q 044931 274 TQQVWQVLRNSLYYSSSKSRDGKIILTTSD---------ENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAES 344 (889)
Q Consensus 274 ~~~~~~~l~~~l~~~~~~~~gs~iivTTR~---------~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~ 344 (889)
+.+.+-.+...+.. .|..||+|++. ++ +...+... .++++++++.++-.+++.+.+. ...
T Consensus 102 ~~~~lf~l~n~~~~-----~g~~ilits~~~p~~~~~~~~d-L~SRl~~g-l~~~l~~pd~e~~~~iL~~~~~-~~~--- 170 (226)
T PRK09087 102 DETGLFHLINSVRQ-----AGTSLLMTSRLWPSSWNVKLPD-LKSRLKAA-TVVEIGEPDDALLSQVIFKLFA-DRQ--- 170 (226)
T ss_pred CHHHHHHHHHHHHh-----CCCeEEEECCCChHHhcccccc-HHHHHhCC-ceeecCCCCHHHHHHHHHHHHH-HcC---
Confidence 11222233333333 36679999873 22 33334444 7899999999999999999885 322
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 345 DGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 345 ~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
...+ +++..-|++++.|..-++..
T Consensus 171 -~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 171 -LYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred -CCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 1233 55666777777776665553
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00034 Score=77.94 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=99.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc---------------------------
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR--------------------------- 224 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------------- 224 (889)
.+++|-+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~--~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC--cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 578999999999988887653 345688999999999999999876321111
Q ss_pred -cCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEc-C
Q 044931 225 -HFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTT-S 302 (889)
Q Consensus 225 -~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTT-R 302 (889)
+++. ..+..+....+.+ ++++.+.+..... .....--+.+...-.+...++.+...+... .+.+.+|++| +
T Consensus 94 ~~~n~-~~~~~~~~~~id~-Ir~l~~~~~~~p~--~~~~kvvIIdea~~l~~~~~~~LLk~LEep---~~~t~~Il~t~~ 166 (397)
T PRK14955 94 TSLNI-SEFDAASNNSVDD-IRLLRENVRYGPQ--KGRYRVYIIDEVHMLSIAAFNAFLKTLEEP---PPHAIFIFATTE 166 (397)
T ss_pred CCCCe-EeecccccCCHHH-HHHHHHHHhhchh--cCCeEEEEEeChhhCCHHHHHHHHHHHhcC---CCCeEEEEEeCC
Confidence 1111 1111111111222 2233333321110 000000000000012334677777777655 4566666555 4
Q ss_pred CCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 303 DENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 303 ~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
... +..........++++++++++..+.+...+. ..+. .-..+.+..|++.++|.+--+
T Consensus 167 ~~k-l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~-~~g~--------~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHK-IPATIASRCQRFNFKRIPLEEIQQQLQGICE-AEGI--------SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHH-hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHH
Confidence 333 4332222226789999999999888887764 2221 122566788999999977433
No 111
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00074 Score=80.98 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=101.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc----------------------ccCCce
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK----------------------RHFAKR 229 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------------------~~F~~~ 229 (889)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-. .++| +
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r--i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR--INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 579999999999999998753 34568899999999999999987632100 1111 2
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCccc
Q 044931 230 AWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPL 309 (889)
Q Consensus 230 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~ 309 (889)
+++.......+.++ +++.+.+..... .....--+++...-.+...++.|...+..- ...+.+|++|.+.+.+..
T Consensus 92 ~eidaas~~~Vd~i-R~l~~~~~~~p~--~~~~KV~IIDEad~lt~~a~NaLLK~LEEp---P~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 92 TEIDAASHGGVDDA-RELRERAFFAPA--ESRYKIFIIDEAHMVTPQGFNALLKIVEEP---PEHLKFIFATTEPDKVIG 165 (824)
T ss_pred EEecccccCCHHHH-HHHHHHHHhchh--cCCceEEEEechhhcCHHHHHHHHHHHhCC---CCCeEEEEEeCChhhhhH
Confidence 34433222222222 223222211100 000000000000022335667777777765 456666665544331443
Q ss_pred ccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch
Q 044931 310 EAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI 369 (889)
Q Consensus 310 ~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 369 (889)
.+......|++..++.++-.+.+.+... ..+. .-..+....|++.++|.+.
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~-~EGv--------~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICA-QEGV--------PVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHH
Confidence 3333337899999999999888887654 2221 1123455678899999773
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.00077 Score=78.13 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=103.7
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc------------------------C
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH------------------------F 226 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------------------------F 226 (889)
-.++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+...-... .
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr--i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR--IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 3679999999999999998764 3457889999999999999998773211100 0
Q ss_pred CceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEc-CCCC
Q 044931 227 AKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTT-SDEN 305 (889)
Q Consensus 227 ~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTT-R~~~ 305 (889)
.-++++.......+.+ +++|+..+..... .....--+.+...-.+....+.+...+..- ...+++|++| ....
T Consensus 101 ~Dv~e~~a~s~~gvd~-IReIie~~~~~P~--~a~~KVvIIDEad~Ls~~a~naLLKtLEeP---p~~~~fIl~tte~~k 174 (598)
T PRK09111 101 VDVLEMDAASHTGVDD-IREIIESVRYRPV--SARYKVYIIDEVHMLSTAAFNALLKTLEEP---PPHVKFIFATTEIRK 174 (598)
T ss_pred CceEEecccccCCHHH-HHHHHHHHHhchh--cCCcEEEEEEChHhCCHHHHHHHHHHHHhC---CCCeEEEEEeCChhh
Confidence 0123333322222222 2233333211110 000000000000012234456666666554 4566666555 4333
Q ss_pred CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 306 NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
+...+......++++.++.++....+.+.+. ..+. .-..+....|++.++|-+.-+..
T Consensus 175 -ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~-kegi--------~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 -VPVTVLSRCQRFDLRRIEADVLAAHLSRIAA-KEGV--------EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred -hhHHHHhheeEEEecCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 4333333337899999999999999988775 3321 11235677889999998865443
No 113
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.50 E-value=0.00096 Score=66.17 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=87.5
Q ss_pred HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc--------------------ccCCceEEEEeCC-cccHH
Q 044931 183 NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK--------------------RHFAKRAWVRVRS-EAKVR 241 (889)
Q Consensus 183 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~v~~-~~~~~ 241 (889)
.+.+.+.... -...+.++|..|+||||+|+.+.+...-. .+.| ..++.... ....
T Consensus 3 ~l~~~i~~~~--~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~- 78 (188)
T TIGR00678 3 QLKRALEKGR--LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKV- 78 (188)
T ss_pred HHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCH-
Confidence 3444554432 34679999999999999999887731111 1112 23332221 2222
Q ss_pred HHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeecc
Q 044931 242 DVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVR 321 (889)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~ 321 (889)
+.++++++.+...... .... --+.+...-.+.+.++.+...+... .+.+.+|++|++...+..........+++.
T Consensus 79 ~~i~~i~~~~~~~~~~-~~~k-viiide~~~l~~~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 79 DQVRELVEFLSRTPQE-SGRR-VVIIEDAERMNEAAANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred HHHHHHHHHHccCccc-CCeE-EEEEechhhhCHHHHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 2333334433221110 0000 0000000012234466677777654 456677777765432433333333789999
Q ss_pred CCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchH
Q 044931 322 RLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIR 370 (889)
Q Consensus 322 ~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 370 (889)
+++.++..+.+.+. + . . .+.+..|++.++|.|..
T Consensus 154 ~~~~~~~~~~l~~~-g----i--------~--~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 154 PLSEEALLQWLIRQ-G----I--------S--EEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCHHHHHHHHHHc-C----C--------C--HHHHHHHHHHcCCCccc
Confidence 99999988888765 1 1 1 34578999999998853
No 114
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.45 E-value=0.00053 Score=81.14 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=37.7
Q ss_pred ccccchhhhHH---HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccC
Q 044931 172 INLVGLEEQIN---NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF 226 (889)
Q Consensus 172 ~~~vGr~~~~~---~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 226 (889)
++|||.+..+. .+.+.+..+ ....+.++|.+|+||||||+.+++ .....|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~---~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD---RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 56899888774 455555543 456778999999999999999998 444444
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0012 Score=77.38 Aligned_cols=179 Identities=16% Similarity=0.143 Sum_probs=101.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc---cCC-----------------ceEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR---HFA-----------------KRAW 231 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~-----------------~~~w 231 (889)
.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-.. .++ .++.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~--i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR--VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 579999999999988887653 345678999999999999999876321000 000 1222
Q ss_pred EEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC
Q 044931 232 VRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN 305 (889)
Q Consensus 232 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~ 305 (889)
+..+....+.+ +++|+..+..... .. ..++. ++ +.+..+.+...+... ...+.+|++|.+.+
T Consensus 94 i~~~~~~~vd~-ir~ii~~~~~~p~--~~------~~kVvIIDEa~~L~~~a~naLLk~LEep---p~~tv~Il~t~~~~ 161 (585)
T PRK14950 94 MDAASHTSVDD-AREIIERVQFRPA--LA------RYKVYIIDEVHMLSTAAFNALLKTLEEP---PPHAIFILATTEVH 161 (585)
T ss_pred EeccccCCHHH-HHHHHHHHhhCcc--cC------CeEEEEEeChHhCCHHHHHHHHHHHhcC---CCCeEEEEEeCChh
Confidence 22222222222 2333332221110 00 00111 22 234456666666554 44566666664433
Q ss_pred CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 306 NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
.+..........+++..++.++....+...+. ..+. .. ..+.+..|++.++|.+..+..
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~-~egl----~i----~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAA-AEGI----NL----EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHcCCCHHHHHH
Confidence 13332222236788999999999888888775 3221 11 245677899999998864443
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0015 Score=72.39 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=97.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc------cccCCc-eEEEEeCCcccHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV------KRHFAK-RAWVRVRSEAKVRDVL 244 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~-~~wv~v~~~~~~~~~~ 244 (889)
.+++|.+..++.+.+.+..+. -.+.+.++|..|+||||+|+.+.+...- ...|.. ++-+......++ +-.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~--~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i 93 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH--LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDI 93 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHH
Confidence 568999999999999998753 3468999999999999999998773211 012222 111221111112 223
Q ss_pred HHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEc-CCCCCcccccccCCCe
Q 044931 245 IDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTT-SDENNIPLEAKAAGST 317 (889)
Q Consensus 245 ~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTT-R~~~~v~~~~~~~~~~ 317 (889)
.++++++..... .. ..++. ++ ....++.+...+... ...+.+|++| .... +..........
T Consensus 94 ~~l~~~~~~~p~--~~------~~kiviIDE~~~l~~~~~~~ll~~le~~---~~~~~~Il~~~~~~k-l~~~l~sr~~~ 161 (367)
T PRK14970 94 RNLIDQVRIPPQ--TG------KYKIYIIDEVHMLSSAAFNAFLKTLEEP---PAHAIFILATTEKHK-IIPTILSRCQI 161 (367)
T ss_pred HHHHHHHhhccc--cC------CcEEEEEeChhhcCHHHHHHHHHHHhCC---CCceEEEEEeCCccc-CCHHHHhccee
Confidence 333333221110 00 00000 11 123455565555443 3345555555 4333 43333322367
Q ss_pred eeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch
Q 044931 318 LHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI 369 (889)
Q Consensus 318 ~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 369 (889)
++..++++++....+...+. ..+. .. ..+....|++.++|-+-
T Consensus 162 v~~~~~~~~~l~~~l~~~~~-~~g~----~i----~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 162 FDFKRITIKDIKEHLAGIAV-KEGI----KF----EDDALHIIAQKADGALR 204 (367)
T ss_pred EecCCccHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHhCCCCHH
Confidence 99999999999998888775 3321 12 24567788888888654
No 117
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=0.00012 Score=86.19 Aligned_cols=108 Identities=22% Similarity=0.179 Sum_probs=83.4
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
..+|.|++|.+.+-..... .+..++ . ++++|+.||+|+++++.+ . .+++|++|+.|.+++-.+..
T Consensus 145 ~~LPsL~sL~i~~~~~~~~-----------dF~~lc-~-sFpNL~sLDIS~TnI~nl-~-GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDND-----------DFSQLC-A-SFPNLRSLDISGTNISNL-S-GISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred hhCcccceEEecCceecch-----------hHHHHh-h-ccCccceeecCCCCccCc-H-HHhccccHHHHhccCCCCCc
Confidence 4589999999998766321 234455 6 999999999999999988 3 79999999999999877764
Q ss_pred cc--cccCCCCCCcEEeecCCCcccCch-------hhhhccccccccccccc
Q 044931 623 LP--KSVGILPRLETLDVKHTKLRFLPD-------SIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 623 lp--~~i~~L~~L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~l~~~~ 665 (889)
-+ ..+.+|++|++||+|......-+. .-..||+||.||.+++.
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 33 478889999999999884333321 11238999999999854
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0012 Score=76.21 Aligned_cols=183 Identities=16% Similarity=0.136 Sum_probs=103.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc---------------------CCceE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH---------------------FAKRA 230 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---------------------F~~~~ 230 (889)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-... ...++
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR--INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 679999999999999998753 3456789999999999999998763110000 01123
Q ss_pred EEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh------hhhHHhHHHHHhhhccCCCCCCCcEEEEEc-CC
Q 044931 231 WVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA------TLTQQVWQVLRNSLYYSSSKSRDGKIILTT-SD 303 (889)
Q Consensus 231 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~------v~~~~~~~~l~~~l~~~~~~~~gs~iivTT-R~ 303 (889)
.+..+....+.+ .++|...+..... .. ..++. ..+....+.+...+..- .....+|++| ..
T Consensus 91 eidaas~~gvd~-iRel~~~~~~~P~--~~------~~KVvIIDEah~Lt~~A~NALLK~LEEp---p~~~~fIL~tte~ 158 (584)
T PRK14952 91 ELDAASHGGVDD-TRELRDRAFYAPA--QS------RYRIFIVDEAHMVTTAGFNALLKIVEEP---PEHLIFIFATTEP 158 (584)
T ss_pred EeccccccCHHH-HHHHHHHHHhhhh--cC------CceEEEEECCCcCCHHHHHHHHHHHhcC---CCCeEEEEEeCCh
Confidence 343332222222 2333322211100 00 00111 12234566677777664 4456655555 43
Q ss_pred CCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHhhhh
Q 044931 304 ENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLLGGLL 378 (889)
Q Consensus 304 ~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~~L 378 (889)
.. +..........++++.++.++..+.+.+.+. ..+. .-..+....|++.++|-+ -|+..+-.++
T Consensus 159 ~k-ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~-~egi--------~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 159 EK-VLPTIRSRTHHYPFRLLPPRTMRALIARICE-QEGV--------VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred Hh-hHHHHHHhceEEEeeCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33 4433333337899999999999888887665 3221 112345677888899876 4555554443
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=97.39 E-value=0.0036 Score=64.23 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=81.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhh-h
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATL-T 274 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~-~ 274 (889)
...+.|+|..|+|||.||+++++ .....-..++|++...-... ...+.+.+..... .-.++ +... .
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~d~----LiiDD----i~~~~~ 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAELLDR---GPELLDNLEQYEL----VCLDD----LDVIAG 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHHHHhh---hHHHHHhhhhCCE----EEEec----hhhhcC
Confidence 36789999999999999999988 33332235677765432111 1122222211100 00000 0000 0
Q ss_pred HHhHHH-HHhhhccCCCCCCCcEEEEEcCCCC-C-------cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccC
Q 044931 275 QQVWQV-LRNSLYYSSSKSRDGKIILTTSDEN-N-------IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESD 345 (889)
Q Consensus 275 ~~~~~~-l~~~l~~~~~~~~gs~iivTTR~~~-~-------v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~ 345 (889)
...|.. +...+.... .+|.+||+||+... . +...+... .++++++++.++-.+.+.+++. ....
T Consensus 112 ~~~~~~~Lf~l~n~~~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~g-l~~~l~~~~~e~~~~il~~ka~-~~~~--- 184 (234)
T PRK05642 112 KADWEEALFHLFNRLR--DSGRRLLLAASKSPRELPIKLPDLKSRLTLA-LVFQMRGLSDEDKLRALQLRAS-RRGL--- 184 (234)
T ss_pred ChHHHHHHHHHHHHHH--hcCCEEEEeCCCCHHHcCccCccHHHHHhcC-eeeecCCCCHHHHHHHHHHHHH-HcCC---
Confidence 112222 222222110 23667999887533 0 11122222 6789999999999999997775 3221
Q ss_pred CCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 346 GLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 346 ~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
..+ ++...-|++++.|-.-++..+
T Consensus 185 -~l~----~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 185 -HLT----DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred -CCC----HHHHHHHHHhcCCCHHHHHHH
Confidence 222 466777888887765544433
No 120
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.38 E-value=3.7e-05 Score=76.09 Aligned_cols=246 Identities=22% Similarity=0.194 Sum_probs=121.2
Q ss_pred CceeeeEEEecCcccCC-----CChHHhccccCCcEEeCCCCCC----cccc-------cccCCCCCCcEEeecCCCcc-
Q 044931 582 GFVLLTVLDLEGVYKLK-----LSDDVIGKLLNLRYLGLRSTFI----DSLP-------KSVGILPRLETLDVKHTKLR- 644 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~-----l~~~~i~~l~~Lr~L~L~~~~i----~~lp-------~~i~~L~~L~~L~L~~~~l~- 644 (889)
-+..+..++||||.|.. +.. .|.+-.+|+..+++.-.. .++| +.+-+|++|++.+||.|-+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 45556666777766542 222 444555666666654211 1222 34567888888888888443
Q ss_pred cCch----hhhhcccccccccccccCC-CCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-----
Q 044931 645 FLPD----SIWKAKKLQHLYLNWIHSP-IDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ----- 714 (889)
Q Consensus 645 ~lp~----~i~~L~~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----- 714 (889)
..|+ -|.+-+.|.||.+++|... .....|+ +.|++|. .+ ....+-+.|+.+.+..++.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la---~n-------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA---YN-------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH---HH-------hhhccCCCceEEEeccchhccCcH
Confidence 3333 3566678888888887622 2222232 1233331 01 1123334555555544441
Q ss_pred hhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCCCCCchh----hhcC
Q 044931 715 MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPL----LEEL 790 (889)
Q Consensus 715 ~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~----l~~L 790 (889)
......+....+|+.+.+.-+.+.. ...+.|.+.| + ..+++|+.|+|..|.++-..... +...
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrp---egv~~L~~~g---------l-~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRP---EGVTMLAFLG---------L-FYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCc---chhHHHHHHH---------H-HHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 2222333333455555554321111 0111111110 0 12366666666666554332222 2334
Q ss_pred CCCCeEEeecCccCCCcce-----eCCCCCCcccEEEccccCCCcce-------ecccCcccccceeecccccCCC
Q 044931 791 AHLNILRLYRGAYLGEETT-----CSSGGFPQLRVLKLWNLFSLEEW-------TVEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 791 ~~L~~L~L~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~-------~~~~~~lp~L~~L~l~~C~~L~ 854 (889)
+.|+.|.+..|-....... +.-..+|+|..|.+.+|..-..+ ....+++|-|..|.+.+ |.++
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~ 316 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIK 316 (388)
T ss_pred chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-Ccch
Confidence 5566666665544432211 12234677777777776542221 12346788888888887 7777
No 121
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=0.00012 Score=70.74 Aligned_cols=35 Identities=31% Similarity=0.720 Sum_probs=28.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcccccc-ccCCceEE
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVK-RHFAKRAW 231 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 231 (889)
+.|.|+|.+|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999965443 45787774
No 122
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.35 E-value=0.0013 Score=72.57 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=40.3
Q ss_pred cccccccchhhhHHHHHHHHhccCC----------CCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 169 EQEINLVGLEEQINNLVSLLIREHN----------HNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~----------~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
....++.|+++.+++|.+.+...-. ...+-|.|+|.+|+|||++|+++++.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999988753210 13566999999999999999999983
No 123
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00056 Score=74.11 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=46.2
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcc-cCCCChHHhccccCCcEEeCCCC-CC
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVY-KLKLSDDVIGKLLNLRYLGLRST-FI 620 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l~~~~i~~l~~Lr~L~L~~~-~i 620 (889)
..+.+++.|++++|.+.. ++.+ -.+|+.|.+++|. ++.+|. .+. .+|++|++++| .+
T Consensus 49 ~~~~~l~~L~Is~c~L~s-------------LP~L-----P~sLtsL~Lsnc~nLtsLP~-~LP--~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-------------LPVL-----PNELTEITIENCNNLTTLPG-SIP--EGLEKLTVCHCPEI 107 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-------------cCCC-----CCCCcEEEccCCCCcccCCc-hhh--hhhhheEccCcccc
Confidence 345667777777765431 2211 1246777777654 444554 332 46777777776 56
Q ss_pred cccccccCCCCCCcEEeecCC---CcccCchhhhh
Q 044931 621 DSLPKSVGILPRLETLDVKHT---KLRFLPDSIWK 652 (889)
Q Consensus 621 ~~lp~~i~~L~~L~~L~L~~~---~l~~lp~~i~~ 652 (889)
..+|.+ |+.|+++.+ .+..+|.++..
T Consensus 108 ~sLP~s------Le~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 108 SGLPES------VRSLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred cccccc------cceEEeCCCCCcccccCcchHhh
Confidence 666643 455555544 34566665443
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.002 Score=75.31 Aligned_cols=185 Identities=16% Similarity=0.193 Sum_probs=100.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-----------------cCCceEEEEe
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-----------------HFAKRAWVRV 234 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------~F~~~~wv~v 234 (889)
.++||-+..++.+..++..+. -...+.++|..|+||||+|+.+.+..--.. +++ ++++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r--l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieida 94 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK--ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDA 94 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEec
Confidence 679999999999999998764 356778999999999999999876211000 111 122322
Q ss_pred CCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEc-CCCCCccccccc
Q 044931 235 RSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTT-SDENNIPLEAKA 313 (889)
Q Consensus 235 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTT-R~~~~v~~~~~~ 313 (889)
.....+.+ ++++...+...... ... .--+.+.........+..+...+..- .....+|++| +... +......
T Consensus 95 asn~~vd~-IReLie~~~~~P~~-g~~-KV~IIDEa~~LT~~A~NALLKtLEEP---P~~tifILaTte~~K-Ll~TI~S 167 (725)
T PRK07133 95 ASNNGVDE-IRELIENVKNLPTQ-SKY-KIYIIDEVHMLSKSAFNALLKTLEEP---PKHVIFILATTEVHK-IPLTILS 167 (725)
T ss_pred cccCCHHH-HHHHHHHHHhchhc-CCC-EEEEEEChhhCCHHHHHHHHHHhhcC---CCceEEEEEcCChhh-hhHHHHh
Confidence 21112221 23333332211100 000 00000000011234566666666554 3455555444 4444 4433333
Q ss_pred CCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch-HHHHHh
Q 044931 314 AGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI-RIVLLG 375 (889)
Q Consensus 314 ~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~g 375 (889)
....+++.+++.++-.+.+...+. ..+. .-..+.+..|++.++|-+- |+..+-
T Consensus 168 Rcq~ieF~~L~~eeI~~~L~~il~-kegI--------~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 168 RVQRFNFRRISEDEIVSRLEFILE-KENI--------SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hceeEEccCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 337899999999999988887664 2221 1123457789999988664 444433
No 125
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0016 Score=74.92 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=104.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc-------------------CCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-------------------FAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 232 (889)
.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+.+...-... ..-++++
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r--i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR--VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 568998888888888887653 3467889999999999999998874211100 0013344
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
.......+.+ .+.+.+.+..... .....--+.+.....+.+.++.|...+..- .....+|++|.+.+.+...+.
T Consensus 94 d~a~~~~Id~-iR~L~~~~~~~p~--~g~~kVIIIDEad~Lt~~a~naLLk~LEEP---~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 94 DGASNRGIDD-AKRLKEAIGYAPM--EGRYKVFIIDEAHMLTREAFNALLKTLEEP---PARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred ecccccCHHH-HHHHHHHHHhhhh--cCCceEEEEEChHhCCHHHHHHHHHHhhcc---CCCEEEEEecCChhhhhHHHH
Confidence 3322222222 2223222221110 000000000000012234456666666543 345556665655331433322
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHhhhh
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLLGGLL 378 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g~~L 378 (889)
.....+++++++.++..+.+...+. .... .-..+.+..|++.++|-+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~-~egi--------~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLG-REGV--------DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2226789999999999998888765 3221 122456778888999854 6777776554
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.006 Score=68.85 Aligned_cols=183 Identities=10% Similarity=0.105 Sum_probs=99.7
Q ss_pred ccccchhhh--HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC--ceEEEEeCCcccHHHHHHHH
Q 044931 172 INLVGLEEQ--INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA--KRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 172 ~~~vGr~~~--~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i 247 (889)
..++|.... ......+....+. ...-+.|+|..|+|||+|++++.+ .+..... .++++ +..++...+
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~ 186 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKA 186 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHH
Confidence 445675443 2333333322221 335689999999999999999998 3433222 23444 334566666
Q ss_pred HHHhhhhhcccCCCCHHHHHHhHh------hhhH------HhH-HHHHhhhccCCCCCCCcEEEEEcCCCC--------C
Q 044931 248 LQQINDEMLVEASSPEEELASSLA------TLTQ------QVW-QVLRNSLYYSSSKSRDGKIILTTSDEN--------N 306 (889)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~l~~~l~------v~~~------~~~-~~l~~~l~~~~~~~~gs~iivTTR~~~--------~ 306 (889)
...+.... ...++..++++ +++. +.| +.+...+.... ..|..||+|+.... .
T Consensus 187 ~~~l~~~~-----~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIltsd~~P~~l~~l~~r 259 (450)
T PRK14087 187 VDILQKTH-----KEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFSSDKSPELLNGFDNR 259 (450)
T ss_pred HHHHHHhh-----hHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEECCCCHHHHhhccHH
Confidence 65554311 01122333322 2211 111 22332222210 23456888876432 0
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLL 378 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 378 (889)
+...+... -++++++++.++-.+++.+++. ..+.. ... -++...-|++.++|.|-.+..+...+
T Consensus 260 L~SR~~~G-l~~~L~~pd~e~r~~iL~~~~~-~~gl~--~~l----~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 260 LITRFNMG-LSIAIQKLDNKTATAIIKKEIK-NQNIK--QEV----TEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhCC-ceeccCCcCHHHHHHHHHHHHH-hcCCC--CCC----CHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 22233333 6788999999999999999885 32210 012 25677889999999987776655333
No 127
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0012 Score=76.01 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=102.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc-------------------ccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK-------------------RHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 232 (889)
.++||-+..++.+..++..+. -...+.++|..|+||||+|+.+.+...-. +.|...+++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR--LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 578999999999999988753 34567899999999999999986632100 112233445
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
..+....+. .+++++..+..... .. ..++. ++ +....+.+...+... ...+.+|++|.+.+.
T Consensus 94 ~~~~~~~vd-~ir~l~~~~~~~p~--~~------~~kVvIIDEad~ls~~a~naLLK~LEep---p~~~~fIL~t~d~~k 161 (527)
T PRK14969 94 DAASNTQVD-AMRELLDNAQYAPT--RG------RFKVYIIDEVHMLSKSAFNAMLKTLEEP---PEHVKFILATTDPQK 161 (527)
T ss_pred eccccCCHH-HHHHHHHHHhhCcc--cC------CceEEEEcCcccCCHHHHHHHHHHHhCC---CCCEEEEEEeCChhh
Confidence 433332222 23344433321110 00 00011 11 223455566666554 445666665544331
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI-RIVLL 374 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 374 (889)
+...+......++++.++.++-.+.+.+.+. ..+. .-..+....|++.++|.+- |+..+
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~-~egi--------~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILE-QENI--------PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4322222226799999999999988887664 2221 1223456788899999774 44444
No 128
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.32 E-value=0.001 Score=61.49 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=44.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccccc-----CCceEEEEeCCcccHHHHHHHHHHHhhhhhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-----FAKRAWVRVRSEAKVRDVLIDILQQINDEML 256 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 256 (889)
+-+++.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...|+.++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK 67 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc
Confidence 3478999999999999999999984 3221 2357799998888899999999999987764
No 129
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.32 E-value=0.00041 Score=76.04 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=56.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLI 245 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 245 (889)
.++++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+.+.++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 56889999999999999865 3588899999999999999998544445678888999998877665543
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.0023 Score=72.14 Aligned_cols=180 Identities=17% Similarity=0.136 Sum_probs=100.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc---------------------ccCCceE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK---------------------RHFAKRA 230 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~ 230 (889)
.++||.+..++.+..++..+. -...+.++|..|+||||+|+.+.+...-. .+++ .+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~--i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR--AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 679999999999999997653 34678899999999999999886631100 1122 22
Q ss_pred EEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hhh-----HHhHHHHHhhhccCCCCCCCcEEEEEcCCC
Q 044931 231 WVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TLT-----QQVWQVLRNSLYYSSSKSRDGKIILTTSDE 304 (889)
Q Consensus 231 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~~-----~~~~~~l~~~l~~~~~~~~gs~iivTTR~~ 304 (889)
++.......+. -.+++.+.+..... .. ..++. +++ .+..+.+...+... ..+..+|++|.+.
T Consensus 94 ~i~g~~~~gid-~ir~i~~~l~~~~~--~~------~~kvvIIdead~lt~~~~n~LLk~lEep---~~~~~~Il~t~~~ 161 (451)
T PRK06305 94 EIDGASHRGIE-DIRQINETVLFTPS--KS------RYKIYIIDEVHMLTKEAFNSLLKTLEEP---PQHVKFFLATTEI 161 (451)
T ss_pred EeeccccCCHH-HHHHHHHHHHhhhh--cC------CCEEEEEecHHhhCHHHHHHHHHHhhcC---CCCceEEEEeCCh
Confidence 23221121122 22233332221100 00 00011 222 23345566666554 4466666666432
Q ss_pred CCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHh
Q 044931 305 NNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLLG 375 (889)
Q Consensus 305 ~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~g 375 (889)
..+..........++++++++++-...+.+.+. ..+. .-..+.+..|++.++|.+ .|+..+-
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~-~eg~--------~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAK-QEGI--------ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 213333333337799999999999888887764 3221 122456778999999865 4444433
No 131
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.29 E-value=0.0023 Score=65.66 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=85.8
Q ss_pred ccchhhhH-HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhh
Q 044931 174 LVGLEEQI-NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQIN 252 (889)
Q Consensus 174 ~vGr~~~~-~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 252 (889)
+.|.+... ..+.++... .. ..+.+.|+|..|+|||+||+.+++... ... ....+++....... + ....
T Consensus 21 ~~~~~~~~~~~l~~~~~~-~~-~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~~---~----~~~~ 89 (227)
T PRK08903 21 VAGENAELVARLRELAAG-PV-ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLLA---F----DFDP 89 (227)
T ss_pred ccCCcHHHHHHHHHHHhc-cC-CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHHH---H----hhcc
Confidence 34655444 344443332 22 446789999999999999999998421 222 23445554332111 0 1010
Q ss_pred hhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCc-EEEEEcCCCCCccc--------ccccCCCeeeccCC
Q 044931 253 DEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDG-KIILTTSDENNIPL--------EAKAAGSTLHVRRL 323 (889)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs-~iivTTR~~~~v~~--------~~~~~~~~~~l~~L 323 (889)
.... -.-.+.+.+ .-+ .-..+...+.... ..|. .||+|++... ... .+... ..+++.++
T Consensus 90 ~~~~-liiDdi~~l----~~~---~~~~L~~~~~~~~--~~~~~~vl~~~~~~~-~~~~l~~~L~sr~~~~-~~i~l~pl 157 (227)
T PRK08903 90 EAEL-YAVDDVERL----DDA---QQIALFNLFNRVR--AHGQGALLVAGPAAP-LALPLREDLRTRLGWG-LVYELKPL 157 (227)
T ss_pred cCCE-EEEeChhhc----Cch---HHHHHHHHHHHHH--HcCCcEEEEeCCCCH-HhCCCCHHHHHHHhcC-eEEEecCC
Confidence 0000 000000000 000 0111222222110 1233 4666666433 221 12112 67899999
Q ss_pred ChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 044931 324 NEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLL 378 (889)
Q Consensus 324 ~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 378 (889)
++++-..++.+.+- ..+. .--++....+++.+.|.+..+..+-..+
T Consensus 158 ~~~~~~~~l~~~~~-~~~v--------~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 158 SDADKIAALKAAAA-ERGL--------QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99887777766543 2221 1224567778888999998877766555
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0014 Score=76.56 Aligned_cols=179 Identities=17% Similarity=0.158 Sum_probs=104.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccc---------------------ccccCCceE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVD---------------------VKRHFAKRA 230 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~ 230 (889)
.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+..... ...+|+. .
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~--l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK--LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 579999999999999998753 346688999999999999988766311 1123442 3
Q ss_pred EEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEE-EcCCCCCccc
Q 044931 231 WVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIIL-TTSDENNIPL 309 (889)
Q Consensus 231 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iiv-TTR~~~~v~~ 309 (889)
.+..+....+.+ +++++.++..... .....--+.+.....+.+.++.+...+..- ...+.+|+ ||+... +..
T Consensus 94 ~ld~~~~~~vd~-Ir~li~~~~~~P~--~~~~KVvIIdea~~Ls~~a~naLLK~LEep---p~~tifIL~tt~~~k-Il~ 166 (614)
T PRK14971 94 ELDAASNNSVDD-IRNLIEQVRIPPQ--IGKYKIYIIDEVHMLSQAAFNAFLKTLEEP---PSYAIFILATTEKHK-ILP 166 (614)
T ss_pred EecccccCCHHH-HHHHHHHHhhCcc--cCCcEEEEEECcccCCHHHHHHHHHHHhCC---CCCeEEEEEeCCchh-chH
Confidence 333333222322 2333333321110 000000000000022345677777777665 45566555 445444 444
Q ss_pred ccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch
Q 044931 310 EAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI 369 (889)
Q Consensus 310 ~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 369 (889)
.......++++.+++.++....+.+.+. ..+. .-..+.+..|++.++|-.-
T Consensus 167 tI~SRc~iv~f~~ls~~ei~~~L~~ia~-~egi--------~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 167 TILSRCQIFDFNRIQVADIVNHLQYVAS-KEGI--------TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred HHHhhhheeecCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHH
Confidence 3333337899999999999998888765 3221 1223467788999998664
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0017 Score=75.45 Aligned_cols=178 Identities=15% Similarity=0.128 Sum_probs=98.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc----------------------------
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK---------------------------- 223 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------------- 223 (889)
.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...-.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r--i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 679999999999999887653 34568899999999999998887632111
Q ss_pred ccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEE
Q 044931 224 RHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKI 297 (889)
Q Consensus 224 ~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~i 297 (889)
.+|+.. .+.......+.+ ++++++.+..... .. ..++. | ++....+.+...+..- ...+.+
T Consensus 94 ~~~n~~-~~d~~s~~~vd~-Ir~l~e~~~~~P~--~~------~~KVvIIdEad~Lt~~a~naLLK~LEeP---p~~tv~ 160 (620)
T PRK14954 94 TSLNIS-EFDAASNNSVDD-IRQLRENVRYGPQ--KG------RYRVYIIDEVHMLSTAAFNAFLKTLEEP---PPHAIF 160 (620)
T ss_pred CCCCeE-EecccccCCHHH-HHHHHHHHHhhhh--cC------CCEEEEEeChhhcCHHHHHHHHHHHhCC---CCCeEE
Confidence 112211 111111111222 2223333211100 00 00011 2 2234456677777664 445555
Q ss_pred EEEc-CCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 044931 298 ILTT-SDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLL 374 (889)
Q Consensus 298 ivTT-R~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~ 374 (889)
|++| +... +...+......+++++++.++....+.+.+. ..+. .-..+.+..|++.++|-. .|+..+
T Consensus 161 IL~t~~~~k-Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~-~egi--------~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 161 IFATTELHK-IPATIASRCQRFNFKRIPLDEIQSQLQMICR-AEGI--------QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred EEEeCChhh-hhHHHHhhceEEecCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555 4333 4333333337899999999998888877654 2221 112456778999999955 344433
No 134
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=2.9e-05 Score=86.81 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=82.7
Q ss_pred ccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 541 EWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 541 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
++.-++.|++|+++.|.... ...+ . .++.|+.|||++|.+..+|.-+...+. |..|+|++|.+
T Consensus 182 SLqll~ale~LnLshNk~~~-------------v~~L--r-~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTK-------------VDNL--R-RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred HHHHHHHhhhhccchhhhhh-------------hHHH--H-hcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 34557889999999998752 2333 4 888999999999998877763444454 99999999999
Q ss_pred cccccccCCCCCCcEEeecCCCcccCc--hhhhhccccccccccccc
Q 044931 621 DSLPKSVGILPRLETLDVKHTKLRFLP--DSIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 621 ~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 665 (889)
++| ..|.+|.+|+.||+++|-|.... .-++.|..|+.|.|.||.
T Consensus 245 ~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 245 TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888 58899999999999999554322 247888899999998864
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.24 E-value=0.026 Score=63.35 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=89.7
Q ss_pred cccccchhhhH--HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC--ceEEEEeCCcccHHHHHHH
Q 044931 171 EINLVGLEEQI--NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA--KRAWVRVRSEAKVRDVLID 246 (889)
Q Consensus 171 ~~~~vGr~~~~--~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~ 246 (889)
+..++|.+... ..+.++...... ....+.|+|..|+|||+||+++++ .+..... .+++++. .++..+
T Consensus 110 d~fi~g~~n~~a~~~~~~~~~~~~~-~~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~ 180 (405)
T TIGR00362 110 DNFVVGKSNRLAHAAALAVAENPGK-AYNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTND 180 (405)
T ss_pred cccccCCcHHHHHHHHHHHHhCcCc-cCCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHH
Confidence 34466755442 223333222221 345689999999999999999999 4444332 3556643 233334
Q ss_pred HHHHhhhhhcccCCCCHHHHHHhHh------hhhHH------hH-HHHHhhhccCCCCCCCcEEEEEcCCCC-C------
Q 044931 247 ILQQINDEMLVEASSPEEELASSLA------TLTQQ------VW-QVLRNSLYYSSSKSRDGKIILTTSDEN-N------ 306 (889)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~l~~~l~------v~~~~------~~-~~l~~~l~~~~~~~~gs~iivTTR~~~-~------ 306 (889)
+...+... ..+.+.+.++ +++.+ .+ +.+...+.... ..|..||+||.... .
T Consensus 181 ~~~~~~~~-------~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~--~~~~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 181 FVNALRNN-------KMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALH--ENGKQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred HHHHHHcC-------CHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCCEEEecCCCHHHHhhhhh
Confidence 44333211 1122222222 11111 11 12222221110 12456888876422 0
Q ss_pred -cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchH
Q 044931 307 -IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIR 370 (889)
Q Consensus 307 -v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 370 (889)
+...+... ..+++++.+.++-..++.+.+. .... ..+ +++...|++.+.|.+-.
T Consensus 252 ~l~SRl~~g-~~v~i~~pd~~~r~~il~~~~~-~~~~----~l~----~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 252 RLRSRFEWG-LVVDIEPPDLETRLAILQKKAE-EEGL----ELP----DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred hhhhhccCC-eEEEeCCCCHHHHHHHHHHHHH-HcCC----CCC----HHHHHHHHHhcCCCHHH
Confidence 11222222 5789999999999999999886 3221 222 56677788888776553
No 136
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.21 E-value=0.00084 Score=63.31 Aligned_cols=59 Identities=29% Similarity=0.350 Sum_probs=44.5
Q ss_pred cchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 175 VGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
+|++..++.+...+... ..+.+.|+|.+|+||||+|+.+++. ....-..++++...+..
T Consensus 1 ~~~~~~~~~i~~~~~~~---~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 1 VGQEEAIEALREALELP---PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLL 59 (151)
T ss_pred CchHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhh
Confidence 47889999999998764 3468999999999999999999984 32222346677665543
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0042 Score=70.60 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=98.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccc-----c--------------cccCCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVD-----V--------------KRHFAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-----~--------------~~~F~~~~wv 232 (889)
.+++|-+..+..+..++.... -..++.++|..|+||||+|+.+..... . ...|...+++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 568999999999999998753 345678899999999999999766211 0 0112223444
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEc-CCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTT-SDEN 305 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTT-R~~~ 305 (889)
..+....+.+ .+.+...+..... .. ..++. + .+.+..+.+...+... .....+|++| +...
T Consensus 94 daas~~gvd~-ir~I~~~~~~~P~--~~------~~KVvIIDEad~Lt~~a~naLLk~LEep---p~~~v~Il~tt~~~k 161 (486)
T PRK14953 94 DAASNRGIDD-IRALRDAVSYTPI--KG------KYKVYIIDEAHMLTKEAFNALLKTLEEP---PPRTIFILCTTEYDK 161 (486)
T ss_pred eCccCCCHHH-HHHHHHHHHhCcc--cC------CeeEEEEEChhhcCHHHHHHHHHHHhcC---CCCeEEEEEECCHHH
Confidence 4333222221 1222222211100 00 00010 1 1223445566555544 3345555544 4333
Q ss_pred CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 306 NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
+..........+++.+++.++-...+.+.+- ..+. .-..+.+..|++.++|.+-.+...
T Consensus 162 -l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k-~egi--------~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 162 -IPPTILSRCQRFIFSKPTKEQIKEYLKRICN-EEKI--------EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred -HHHHHHHhceEEEcCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322222226789999999999888888764 3221 112345667888898876544333
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.15 E-value=0.0022 Score=69.61 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=40.3
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-.+++|.++..+.+..++..+. -..++.++|.+|+||||+|+.+++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~--~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR--IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3678999999999999998643 4568888999999999999999883
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0042 Score=70.60 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=103.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccc---ccc---------------cCC-ceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVD---VKR---------------HFA-KRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~---------------~F~-~~~wv 232 (889)
.++||-+...+.+...+..+. -..++.++|..|+||||+|+.+.+..- -.. .+. .++++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr--l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR--LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 569999999999999987653 345778999999999999998766310 000 111 13333
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
..+....+.+ +++++........ .. ..++. + .+.+..+.+...+..- .+.+++|++|.+...
T Consensus 92 daas~~gId~-IRelie~~~~~P~--~~------~~KVvIIDEad~Lt~~A~NALLK~LEEp---p~~t~FIL~ttd~~k 159 (535)
T PRK08451 92 DAASNRGIDD-IRELIEQTKYKPS--MA------RFKIFIIDEVHMLTKEAFNALLKTLEEP---PSYVKFILATTDPLK 159 (535)
T ss_pred ccccccCHHH-HHHHHHHHhhCcc--cC------CeEEEEEECcccCCHHHHHHHHHHHhhc---CCceEEEEEECChhh
Confidence 3332222322 2233332211100 00 00011 1 1234455666666554 456777766665432
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
+..........+++.+++.++....+.+.+. ..+. .-..+.+..|++.++|.+--+..+
T Consensus 160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~-~EGi--------~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 160 LPATILSRTQHFRFKQIPQNSIISHLKTILE-KEGV--------SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CchHHHhhceeEEcCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4333333337899999999999998887765 3221 122456778999999988544433
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0048 Score=72.19 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=100.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC---------------------ceE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA---------------------KRA 230 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---------------------~~~ 230 (889)
.+++|.+..+..|..++.... -...+.++|..|+||||+|+.+.+...-..... .++
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 578999999999999998753 235788999999999999999977321100000 112
Q ss_pred EEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCC
Q 044931 231 WVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDE 304 (889)
Q Consensus 231 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~ 304 (889)
.+.......+ +-+++++..+..... .. ..++. + .+.+.++.+...+..- .....+|++|.+.
T Consensus 94 ei~~~~~~~v-d~IReii~~a~~~p~--~~------~~KViIIDEad~Lt~~a~naLLK~LEeP---p~~tvfIL~t~~~ 161 (620)
T PRK14948 94 EIDAASNTGV-DNIRELIERAQFAPV--QA------RWKVYVIDECHMLSTAAFNALLKTLEEP---PPRVVFVLATTDP 161 (620)
T ss_pred EEeccccCCH-HHHHHHHHHHhhChh--cC------CceEEEEECccccCHHHHHHHHHHHhcC---CcCeEEEEEeCCh
Confidence 2222211122 222333333221100 00 00011 2 2234566677776654 3455555555443
Q ss_pred CCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 305 NNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 305 ~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
..+...+......+++..++.++....+.+.+. ..+. .. ..+.+..|++.++|.+..+..+
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~-kegi----~i----s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE-KESI----EI----EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHH-HhCC----CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 324333333336788899999998888877665 3221 11 1345778999999987544433
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0049 Score=71.18 Aligned_cols=182 Identities=17% Similarity=0.149 Sum_probs=101.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc--------------------ccCCceEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK--------------------RHFAKRAW 231 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~w 231 (889)
.++||-+..++.+..++..+. -...+-++|..|+||||+|+.+.+..--. .+++ .++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~--i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~ 92 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK--IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIE 92 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEE
Confidence 579999999999999998754 45678899999999999999987732111 1122 233
Q ss_pred EEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCccccc
Q 044931 232 VRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEA 311 (889)
Q Consensus 232 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~ 311 (889)
+.......+.++ +++...+..... .....--+.+....++...++.+...+... .....+|.+|.....+....
T Consensus 93 idgas~~~vddI-r~l~e~~~~~p~--~~~~KVvIIDEa~~Ls~~a~naLLK~LEep---p~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 93 IDGASNTSVQDV-RQIKEEIMFPPA--SSRYRVYIIDEVHMLSNSAFNALLKTIEEP---PPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred ecCcccCCHHHH-HHHHHHHHhchh--cCCCEEEEEEChhhcCHHHHHHHHHhhccC---CCCEEEEEecCChHHhHHHH
Confidence 332222222222 222222111100 000000000001122344566677766654 44566666654422143323
Q ss_pred ccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 312 KAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 312 ~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
......+++++++.++-.+.+.+.+. ..+. .--.+.+..|++.++|.+-.+
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~-~egi--------~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCL-EDQI--------KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHHH
Confidence 32336789999999999888888775 3221 222456677889999977543
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.04 E-value=0.03 Score=63.74 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=101.3
Q ss_pred ccccchhhh--HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC--ceEEEEeCCcccHHHHHHHH
Q 044931 172 INLVGLEEQ--INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA--KRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 172 ~~~vGr~~~--~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i 247 (889)
..++|.... .....++....+. ...-+.|+|..|+|||+||+++++ .+...+. .+++++.. ++..++
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~ 193 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGK-AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDF 193 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCc-cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHH
Confidence 445675443 3333333333222 345689999999999999999999 4545443 24555432 233333
Q ss_pred HHHhhhhhcccCCCCHHHHHHhHh------hhhHH-------hHHHHHhhhccCCCCCCCcEEEEEcCCCC-C-------
Q 044931 248 LQQINDEMLVEASSPEEELASSLA------TLTQQ-------VWQVLRNSLYYSSSKSRDGKIILTTSDEN-N------- 306 (889)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~l~~~l~------v~~~~-------~~~~l~~~l~~~~~~~~gs~iivTTR~~~-~------- 306 (889)
...+... ..+.+.+.++ +++.+ ..+.+...+.... ..|..||+||.... .
T Consensus 194 ~~~~~~~-------~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 194 VNALRNN-------TMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHHHcC-------cHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHH
Confidence 3333211 1122322222 11111 1122222221110 22455888886542 0
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH----HHHhhhh--hc
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI----VLLGGLL--SA 380 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai----~~~g~~L--~~ 380 (889)
+...+... .++++++.+.++-..++.+.+. ... ...+ +++..-|++.+.|..-.+ ..+..+- ..
T Consensus 265 l~SRl~~g-l~v~i~~pd~~~r~~il~~~~~-~~~----~~l~----~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~ 334 (450)
T PRK00149 265 LRSRFEWG-LTVDIEPPDLETRIAILKKKAE-EEG----IDLP----DEVLEFIAKNITSNVRELEGALNRLIAYASLTG 334 (450)
T ss_pred HHhHhcCC-eeEEecCCCHHHHHHHHHHHHH-HcC----CCCC----HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhC
Confidence 11223222 5799999999999999999885 322 1223 456777888888765533 2332221 11
Q ss_pred ccCCChhhHHHHHHhc
Q 044931 381 TKGRNFQKWSSVIERA 396 (889)
Q Consensus 381 ~~~~~~~~w~~~l~~l 396 (889)
+. -+....+.++..+
T Consensus 335 ~~-it~~~~~~~l~~~ 349 (450)
T PRK00149 335 KP-ITLELAKEALKDL 349 (450)
T ss_pred CC-CCHHHHHHHHHHh
Confidence 11 1266666666654
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.03 E-value=0.0046 Score=62.36 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=79.7
Q ss_pred cccccccch-hh-hHHHHHHHHhccCCCC-ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHH
Q 044931 169 EQEINLVGL-EE-QINNLVSLLIREHNHN-SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLI 245 (889)
Q Consensus 169 ~~~~~~vGr-~~-~~~~l~~~L~~~~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 245 (889)
.-+..+||- .. ....+.++-....... .+.+-|||.+|+|||+|++.+++... . .++. ..+...
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~~---- 80 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFNE---- 80 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhch----
Confidence 345667776 33 3344444332111101 26799999999999999999888432 1 2221 111011
Q ss_pred HHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcc-------cccccCCCee
Q 044931 246 DILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIP-------LEAKAAGSTL 318 (889)
Q Consensus 246 ~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~-------~~~~~~~~~~ 318 (889)
+..+.. .. .-.++ +.-|.....-.+...+.. .|..||+|++... -. ..+... -++
T Consensus 81 ~~~~~~---d~----lliDd----i~~~~~~~lf~l~N~~~e-----~g~~ilits~~~p-~~l~l~~L~SRl~~g-l~~ 142 (214)
T PRK06620 81 EILEKY---NA----FIIED----IENWQEPALLHIFNIINE-----KQKYLLLTSSDKS-RNFTLPDLSSRIKSV-LSI 142 (214)
T ss_pred hHHhcC---CE----EEEec----cccchHHHHHHHHHHHHh-----cCCEEEEEcCCCc-cccchHHHHHHHhCC-ceE
Confidence 111100 00 00000 001111112222222323 3668999998655 21 112222 589
Q ss_pred eccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc
Q 044931 319 HVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP 368 (889)
Q Consensus 319 ~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 368 (889)
++++++.++-..++.+.+. .... ..+ +++..-|++++.|--
T Consensus 143 ~l~~pd~~~~~~~l~k~~~-~~~l----~l~----~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 143 LLNSPDDELIKILIFKHFS-ISSV----TIS----RQIIDFLLVNLPREY 183 (214)
T ss_pred eeCCCCHHHHHHHHHHHHH-HcCC----CCC----HHHHHHHHHHccCCH
Confidence 9999999998888887764 2221 122 456666777666543
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0038 Score=72.80 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=98.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc--------------------cCCceEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR--------------------HFAKRAW 231 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~w 231 (889)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-.. ++| ++.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~--~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~e 92 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR--VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFE 92 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eee
Confidence 679999999999999988753 346678999999999999998876311000 111 122
Q ss_pred EEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEc-CCC
Q 044931 232 VRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTT-SDE 304 (889)
Q Consensus 232 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTT-R~~ 304 (889)
+.......+.+ .+++...+..... .. ..++. ++ +....+.+...+..- ...+.+|++| ...
T Consensus 93 id~~s~~~v~~-ir~l~~~~~~~p~--~~------~~KVvIIdev~~Lt~~a~naLLk~LEep---p~~~~fIl~t~~~~ 160 (576)
T PRK14965 93 IDGASNTGVDD-IRELRENVKYLPS--RS------RYKIFIIDEVHMLSTNAFNALLKTLEEP---PPHVKFIFATTEPH 160 (576)
T ss_pred eeccCccCHHH-HHHHHHHHHhccc--cC------CceEEEEEChhhCCHHHHHHHHHHHHcC---CCCeEEEEEeCChh
Confidence 22222222222 2233332211110 00 00111 22 234455666666554 3456666554 444
Q ss_pred CCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 044931 305 NNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP-IRIVLL 374 (889)
Q Consensus 305 ~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~ 374 (889)
. +..........+++++++.++-...+...+. ..+. .-..+....|++.++|.. .|+..+
T Consensus 161 k-l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~-~egi--------~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 161 K-VPITILSRCQRFDFRRIPLQKIVDRLRYIAD-QEGI--------SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred h-hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHH-HhCC--------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4433333336788999999998888877654 2221 112445667888888855 455444
No 145
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.97 E-value=0.0011 Score=71.38 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=45.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc--ccHHHHHHHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE--AKVRDVLIDILQQ 250 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~ 250 (889)
.-..++|+|.+|.|||||++.+++... .++|+..+||.+.+. .++.++++.+...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~ 223 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGE 223 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhce
Confidence 447899999999999999999999533 336999999999866 7888888888543
No 146
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.96 E-value=0.0052 Score=68.19 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=39.3
Q ss_pred ccccccchhhhHHHHHHHHhccC----------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 170 QEINLVGLEEQINNLVSLLIREH----------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+++.|+++.+++|.+.+...- -..++-|.++|.+|.|||++|+++++
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 34679999999999988774310 02456799999999999999999998
No 147
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.019 Score=62.73 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=111.2
Q ss_pred ccccchhhhHHHHHHHHhccCC-CCceEEEEECCCCCcHHHHHHHHhccccccccCC-c-eEEEEeCCcccHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHN-HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA-K-RAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~-~~wv~v~~~~~~~~~~~~i~ 248 (889)
..+.+|+++++++...|..--. ..+.-+.|+|..|.|||+.++.+.+ +++.... . +++|+.-...+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3399999999999988865321 1333499999999999999999999 5544432 2 68898888889999999999
Q ss_pred HHhhhhhcccCCCCHHHHHHhHh-------------hhhHHh-----HHHHHhhhccCCCCCCCcEEEEEcCCCC-Cccc
Q 044931 249 QQINDEMLVEASSPEEELASSLA-------------TLTQQV-----WQVLRNSLYYSSSKSRDGKIILTTSDEN-NIPL 309 (889)
Q Consensus 249 ~~l~~~~~~~~~~~~~~l~~~l~-------------v~~~~~-----~~~l~~~l~~~~~~~~gs~iivTTR~~~-~v~~ 309 (889)
++++.... ......+..+.+. +++.+. -+.+-..+.... ...++|+|..-... .+..
T Consensus 95 ~~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~--~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 95 NKLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG--ENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc--ccceeEEEEEEeccHHHHH
Confidence 99973222 3333333333332 111111 023333333321 12455544332222 0111
Q ss_pred cccc------CCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 310 EAKA------AGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 310 ~~~~------~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.+.. ....+...+-+.+|-...+..++- ..-.. ..+.+.-++-++...++..|-.-.||.++-
T Consensus 171 ~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~-~~~~~--~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 171 YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE-EGFSA--GVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH-hhccC--CCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1111 113467888899999998888774 22111 344423344444444444444445555543
No 148
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.013 Score=63.00 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=55.4
Q ss_pred HhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHH
Q 044931 276 QVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVT 355 (889)
Q Consensus 276 ~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~ 355 (889)
+..+.+...+..- ..++.+|+||.+.+.+..........+.+.+++.+++.+.+..... . ...+
T Consensus 121 ~aaNaLLK~LEEP---p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~------------~~~~ 184 (328)
T PRK05707 121 NAANALLKSLEEP---SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-E------------SDER 184 (328)
T ss_pred HHHHHHHHHHhCC---CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-c------------CChH
Confidence 4566666666554 4577788888776534443333337899999999999998876532 1 1123
Q ss_pred HHHHHHHHhCCCchHHHHH
Q 044931 356 FKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 356 ~~~~I~~~c~GlPLai~~~ 374 (889)
.+..++..++|.|+.+..+
T Consensus 185 ~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 185 ERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 3557788999999766544
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.87 E-value=0.011 Score=62.56 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=77.7
Q ss_pred ccccchhhhHHHHHHHHhc---c------C---CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCccc
Q 044931 172 INLVGLEEQINNLVSLLIR---E------H---NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAK 239 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~---~------~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 239 (889)
..++|.++.+++|.++... . + .....-+.++|.+|.||||+|+.+++...........-|+.++.. +
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~-~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD-D 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH-H
Confidence 4689988888877664321 1 0 001235889999999999999887763211111111234444421 1
Q ss_pred HH--------HHHHHHHHHhhhhhcccCCCCHHHHHHh--HhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCccc
Q 044931 240 VR--------DVLIDILQQINDEMLVEASSPEEELASS--LATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPL 309 (889)
Q Consensus 240 ~~--------~~~~~i~~~l~~~~~~~~~~~~~~l~~~--l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~ 309 (889)
.. .-...++++...... --...+.+... -.-|..+.++.+...+... ..+-+||.+|.... .-.
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~gvL--~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~-~~~ 174 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMGGVL--FIDEAYYLYRPDNERDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR-MDS 174 (284)
T ss_pred HhHhhcccchHHHHHHHHHccCcEE--EEechhhhccCCCccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH-HHH
Confidence 10 001111111111000 00000000000 0012334455666666554 44566667665332 211
Q ss_pred cccc-------CCCeeeccCCChhhHHHHHHHHhc
Q 044931 310 EAKA-------AGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 310 ~~~~-------~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
.... ....+++++++.+|-.+++...+-
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 1111 125789999999999999988774
No 150
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00055 Score=68.29 Aligned_cols=106 Identities=23% Similarity=0.210 Sum_probs=65.5
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCC--CCc-ccccccCCCCCCcEEeecCCCcccCc--hhhhhcccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRST--FID-SLPKSVGILPRLETLDVKHTKLRFLP--DSIWKAKKL 656 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L 656 (889)
.+..|..|++.++.++.+- .+..|++|++|.++.| .+. .++....++++|++|++++|+++.+- ..+.++.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 5666667777777665443 3556778888888877 444 56556666688888888888665321 245667777
Q ss_pred cccccccccCCCCCC----Cccccccccccccccccc
Q 044931 657 QHLYLNWIHSPIDGL----SLSSLNNLQTLWGLSIES 689 (889)
Q Consensus 657 ~~L~l~~~~~~~~~~----~i~~l~~L~~L~~~~~~~ 689 (889)
..|++.+|....+-. .+.-+++|+.|...++..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 777777766333211 133455666665555543
No 151
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.006 Score=61.64 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=99.2
Q ss_pred ccccchhhhHHHHHHHHhccCC--CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHN--HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.+|||-++.++++.=.+..... ..+-.|.++|.+|.||||||..+.+. +...+. ++.+....-..-+..|+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAILT 99 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHHh
Confidence 6799999999998877765422 36788999999999999999999994 433321 222222222222333333
Q ss_pred HhhhhhcccCCCCHHHHHHhHh-hhhH---HhHHHHHhhhccCCCCCCCcEE-----------EEEcCCCCCcccccccC
Q 044931 250 QINDEMLVEASSPEEELASSLA-TLTQ---QVWQVLRNSLYYSSSKSRDGKI-----------ILTTSDENNIPLEAKAA 314 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~~l~~~l~-v~~~---~~~~~l~~~l~~~~~~~~gs~i-----------ivTTR~~~~v~~~~~~~ 314 (889)
.+...+- .=.+++ +++. .... ...+++.--+--+ .++++|. =-|||--. +.......
T Consensus 100 ~Le~~DV----LFIDEI-Hrl~~~vEE~LYpaMEDf~lDI~IG--~gp~Arsv~ldLppFTLIGATTr~G~-lt~PLrdR 171 (332)
T COG2255 100 NLEEGDV----LFIDEI-HRLSPAVEEVLYPAMEDFRLDIIIG--KGPAARSIRLDLPPFTLIGATTRAGM-LTNPLRDR 171 (332)
T ss_pred cCCcCCe----EEEehh-hhcChhHHHHhhhhhhheeEEEEEc--cCCccceEeccCCCeeEeeecccccc-ccchhHHh
Confidence 3322211 000000 0000 0000 0111111101111 1334443 34898765 54443332
Q ss_pred C-CeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 044931 315 G-STLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIV 372 (889)
Q Consensus 315 ~-~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 372 (889)
. .+.+++.-+.+|-.+...+.|. .=.. .-.++-+.+|+++..|-|--..
T Consensus 172 FGi~~rlefY~~~eL~~Iv~r~a~-~l~i--------~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 172 FGIIQRLEFYTVEELEEIVKRSAK-ILGI--------EIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred cCCeeeeecCCHHHHHHHHHHHHH-HhCC--------CCChHHHHHHHHhccCCcHHHH
Confidence 2 6788999999999999999885 2111 2335678899999999996443
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.027 Score=60.30 Aligned_cols=184 Identities=14% Similarity=0.140 Sum_probs=100.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc-------------cccCCceEEEEeCCcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV-------------KRHFAKRAWVRVRSEA 238 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~v~~~~ 238 (889)
.+++|-+..++.+.+.+..+. -....-++|..|+||+++|..+.+..-- ....+-..|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r--l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR--IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 568999999999999998764 3578999999999999999887652110 1112223454211000
Q ss_pred cHHHHHHHHHHHhhhhhcccCCCCHH---HHHHhHh------------hhhH-----HhHHHHHhhhccCCCCCCCcEEE
Q 044931 239 KVRDVLIDILQQINDEMLVEASSPEE---ELASSLA------------TLTQ-----QVWQVLRNSLYYSSSKSRDGKII 298 (889)
Q Consensus 239 ~~~~~~~~i~~~l~~~~~~~~~~~~~---~l~~~l~------------v~~~-----~~~~~l~~~l~~~~~~~~gs~ii 298 (889)
+-..+-.+-+...+...........+ ++.+.+. +|+. .....+...+-.- . .+.+|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP---p-~~~fI 157 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP---G-NGTLI 157 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC---C-CCeEE
Confidence 00000000000000000000111111 2222221 4443 3455666666554 3 44566
Q ss_pred EEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 044931 299 LTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVL 373 (889)
Q Consensus 299 vTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 373 (889)
++|.+.+.+..........+++.++++++..+.+.+... ... .......++..++|.|..+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~-~~~-----------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD-EEI-----------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhc-ccc-----------chhHHHHHHHHcCCCHHHHHH
Confidence 555554424444444447899999999999999988653 211 111135788999999966544
No 153
>CHL00181 cbbX CbbX; Provisional
Probab=96.82 E-value=0.036 Score=58.61 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=77.7
Q ss_pred cccccchhhhHHHHHHHHh---cc------C---CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 171 EINLVGLEEQINNLVSLLI---RE------H---NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~---~~------~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
+.+++|.+..+++|.++.. .. + ......+.++|.+|+||||+|+.+++.......-...-|+.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~- 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD- 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH-
Confidence 3578998888876655432 11 0 012335889999999999999999773111111111225554422
Q ss_pred cHHH-H-------HHHHHHHhhhhhc--ccCCCCHHHHHH--hHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 239 KVRD-V-------LIDILQQINDEML--VEASSPEEELAS--SLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 239 ~~~~-~-------~~~i~~~l~~~~~--~~~~~~~~~l~~--~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
+... . ...++++...... ++ .+.+.. .-.-+..+.-+.+...+.+. ..+.+||.++....
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE----~~~l~~~~~~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~~- 172 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMGGVLFIDE----AYYLYKPDNERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKDR- 172 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccCCEEEEEc----cchhccCCCccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH-
Confidence 1100 0 1112221111000 00 000000 00012233344455555544 44566777765332
Q ss_pred ccccc-------ccCCCeeeccCCChhhHHHHHHHHhc
Q 044931 307 IPLEA-------KAAGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 307 v~~~~-------~~~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
+.... .-....+++++++.+|-.+++.+.+.
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 21111 11125789999999999999888775
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.76 E-value=0.013 Score=65.78 Aligned_cols=123 Identities=14% Similarity=0.155 Sum_probs=65.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-----
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA----- 271 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~----- 271 (889)
.-+.|+|..|+|||+||+++++ .+...--.+++++. ..+...+...+.... .+......+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~------~~f~~~~~~~l~~~~-------~~~f~~~~~~~dvL 206 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRS------ELFTEHLVSAIRSGE-------MQRFRQFYRNVDAL 206 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeH------HHHHHHHHHHHhcch-------HHHHHHHcccCCEE
Confidence 5688999999999999999999 44333234556543 233333333332110 111221111
Q ss_pred -hhhHH-------hHHHHHhhhccCCCCCCCcEEEEEcCCCC-C-------cccccccCCCeeeccCCChhhHHHHHHHH
Q 044931 272 -TLTQQ-------VWQVLRNSLYYSSSKSRDGKIILTTSDEN-N-------IPLEAKAAGSTLHVRRLNEEESWKLLLKR 335 (889)
Q Consensus 272 -v~~~~-------~~~~l~~~l~~~~~~~~gs~iivTTR~~~-~-------v~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 335 (889)
+++.+ ..+.+...+.... ..|..||+||.... . +...+... .++++++++.++-..++.++
T Consensus 207 iIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred EEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHHHHHHHHHHH
Confidence 11110 0112222211100 12456888886421 0 12223222 67889999999999999988
Q ss_pred hc
Q 044931 336 AL 337 (889)
Q Consensus 336 a~ 337 (889)
+.
T Consensus 284 ~~ 285 (445)
T PRK12422 284 AE 285 (445)
T ss_pred HH
Confidence 85
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.75 E-value=0.061 Score=61.91 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCC--ceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh---
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA--KRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA--- 271 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~--- 271 (889)
..+.|+|-.|+|||.|++++++ .....+. .+++++. .+++.++...+... ..+.+.++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~-------~~~~f~~~y~~~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG-------KGDSFRRRYREMD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-------cHHHHHHHhhcCC
Confidence 4589999999999999999999 4443332 3456643 33333333332211 1122222222
Q ss_pred ---hhhH------HhHH-HHHhhhccCCCCCCCcEEEEEcCCCC--------CcccccccCCCeeeccCCChhhHHHHHH
Q 044931 272 ---TLTQ------QVWQ-VLRNSLYYSSSKSRDGKIILTTSDEN--------NIPLEAKAAGSTLHVRRLNEEESWKLLL 333 (889)
Q Consensus 272 ---v~~~------~~~~-~l~~~l~~~~~~~~gs~iivTTR~~~--------~v~~~~~~~~~~~~l~~L~~~es~~Lf~ 333 (889)
+++. +.|. .+...+.... ..|..|||||+... .+...+... -+++++..+.+.-.+++.
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELETRIAILR 456 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHHHHHHHHH
Confidence 1111 1121 1222221110 23556888887531 022233333 789999999999999999
Q ss_pred HHhcCCCccccCCCCCChhHHHHHHHHHHHhCCC
Q 044931 334 KRALLPRAAESDGLFNNSELVTFKERILKKCGGL 367 (889)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 367 (889)
+++. .... ..+ +++..-|++++.+.
T Consensus 457 kka~-~r~l----~l~----~eVi~yLa~r~~rn 481 (617)
T PRK14086 457 KKAV-QEQL----NAP----PEVLEFIASRISRN 481 (617)
T ss_pred HHHH-hcCC----CCC----HHHHHHHHHhccCC
Confidence 9886 4332 222 45555566665544
No 156
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.72 E-value=0.057 Score=56.18 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=62.7
Q ss_pred cccccchhh---hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC------ceEEEEeCCcccHH
Q 044931 171 EINLVGLEE---QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA------KRAWVRVRSEAKVR 241 (889)
Q Consensus 171 ~~~~vGr~~---~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~wv~v~~~~~~~ 241 (889)
.+..||... .++++.++|..+......-+.|||-.|+|||++++++.... -..++ .++.|.+....+..
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecCCCCChH
Confidence 455666443 45667777776654456679999999999999999988632 11221 46677888889999
Q ss_pred HHHHHHHHHhhhhhc
Q 044931 242 DVLIDILQQINDEML 256 (889)
Q Consensus 242 ~~~~~i~~~l~~~~~ 256 (889)
.+...|+.+++....
T Consensus 111 ~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 111 RFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHHhCcccC
Confidence 999999999998775
No 157
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.72 E-value=0.012 Score=61.79 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=34.1
Q ss_pred ccccchhhhHHHHHHHHhc---------c---CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIR---------E---HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.+..++.|.+.... . ..+....+.++|.+|.||||+|+.+++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 4589988888776544321 1 012456788999999999999999987
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.66 E-value=0.038 Score=61.69 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=39.8
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhccccccccC
Q 044931 172 INLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF 226 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 226 (889)
.++.|.++.+++|.+.+... +-...+-|.++|.+|.|||++|+++++ .....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 56789999999988877421 012456788999999999999999999 444433
No 159
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.017 Score=67.13 Aligned_cols=174 Identities=16% Similarity=0.109 Sum_probs=96.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc--------------------cccCCceEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV--------------------KRHFAKRAW 231 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~F~~~~w 231 (889)
.++||.+...+.+..++..+. -...+-++|..|.||||+|+.+.+...- ..++| ++.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~--~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~e 92 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK--ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIE 92 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEE
Confidence 679999999999999998764 3567788999999999999988662110 01122 223
Q ss_pred EEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEc-CCC
Q 044931 232 VRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTT-SDE 304 (889)
Q Consensus 232 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTT-R~~ 304 (889)
+..+....+. -.+++...+..... .. ..++. ++ ....+..+...+..- .....+|++| ...
T Consensus 93 idaas~~~vd-~ir~i~~~v~~~p~--~~------~~kViIIDE~~~Lt~~a~naLLKtLEep---p~~~ifIlatt~~~ 160 (559)
T PRK05563 93 IDAASNNGVD-EIRDIRDKVKYAPS--EA------KYKVYIIDEVHMLSTGAFNALLKTLEEP---PAHVIFILATTEPH 160 (559)
T ss_pred eeccccCCHH-HHHHHHHHHhhCcc--cC------CeEEEEEECcccCCHHHHHHHHHHhcCC---CCCeEEEEEeCChh
Confidence 3332222221 12222222111000 00 00000 11 234556666665543 3344555444 433
Q ss_pred CCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchH
Q 044931 305 NNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIR 370 (889)
Q Consensus 305 ~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 370 (889)
. +..........++..+++.++....+...+. ..+. .-..+....|++.++|-+..
T Consensus 161 k-i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~-~egi--------~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 161 K-IPATILSRCQRFDFKRISVEDIVERLKYILD-KEGI--------EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred h-CcHHHHhHheEEecCCCCHHHHHHHHHHHHH-HcCC--------CCCHHHHHHHHHHcCCCHHH
Confidence 3 4333322236788999999999888887764 3221 11235567788888887653
No 160
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00022 Score=71.06 Aligned_cols=58 Identities=31% Similarity=0.321 Sum_probs=35.7
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc--cccCCCCCCcEEeecCC
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP--KSVGILPRLETLDVKHT 641 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~ 641 (889)
.|+.|+||.|+-|.|+.+-+ +..|++|+.|.|+.|.|..+. ..+.+|++|++|.|..|
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 66666666666666665554 666666666666666655443 34556666666666555
No 161
>PRK06696 uridine kinase; Validated
Probab=96.58 E-value=0.0029 Score=64.57 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=36.1
Q ss_pred chhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 176 GLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|.+.+++|.+.+.....+...+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3677788888888764434788999999999999999999988
No 162
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.54 E-value=0.0068 Score=63.73 Aligned_cols=77 Identities=27% Similarity=0.348 Sum_probs=66.2
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
++.+.+|+.++..+..++...+..-+.+|-|+|..|.|||.+.+.+++.. =-..+|+++-..++.+.++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHHHHH
Confidence 57889999999999999988765335567999999999999999999953 1246899999999999999999999
Q ss_pred hh
Q 044931 251 IN 252 (889)
Q Consensus 251 l~ 252 (889)
..
T Consensus 80 ~~ 81 (438)
T KOG2543|consen 80 SQ 81 (438)
T ss_pred hc
Confidence 85
No 163
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.53 E-value=0.0026 Score=67.95 Aligned_cols=47 Identities=23% Similarity=0.515 Sum_probs=40.7
Q ss_pred cccchhhhHHHHHHHHhccCC---CCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 173 NLVGLEEQINNLVSLLIREHN---HNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+++|.++.++++++++..... ...+++.++|.+|+||||||..+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999976421 24689999999999999999999884
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.53 E-value=0.0094 Score=72.64 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=38.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|||++++.++++.|..... .-+.++|.+|+||||+|..+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~---~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ---NNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc---CceeEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987642 3456999999999999999988
No 165
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.46 E-value=0.0026 Score=60.85 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=42.3
Q ss_pred CceeeeEEEecCcccCCCChHHhcc-ccCCcEEeCCCCCCcccc--cccCCCCCCcEEeecCCCcccCch----hhhhcc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGK-LLNLRYLGLRSTFIDSLP--KSVGILPRLETLDVKHTKLRFLPD----SIWKAK 654 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~-l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~ 654 (889)
.++.|..|.|.+|.|+.+.+ .+.. +++|..|.|.+|.|.++- ..+..++.|++|.+-+|.++.-+. .+.+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 55556666666666655555 3333 334666666665554332 234445556666665555554332 245555
Q ss_pred ccccccccc
Q 044931 655 KLQHLYLNW 663 (889)
Q Consensus 655 ~L~~L~l~~ 663 (889)
+|+.||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 566665543
No 166
>PRK07261 topology modulation protein; Provisional
Probab=96.46 E-value=0.0048 Score=59.91 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=25.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccccc-cccCCceEEE
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDV-KRHFAKRAWV 232 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv 232 (889)
.|.|+|++|+||||||+.+.....+ .-+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 4899999999999999998764222 1245666664
No 167
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.43 E-value=0.0012 Score=65.78 Aligned_cols=248 Identities=14% Similarity=0.040 Sum_probs=133.8
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccC----C-------CChHHhccccCC
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKL----K-------LSDDVIGKLLNL 610 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~----~-------l~~~~i~~l~~L 610 (889)
+..+..+..+++++|.+....... .-..+ . +-++|++.+++.-... . +.+ .+-+|++|
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~-------l~~~i--a-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~-aLlkcp~l 94 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEE-------LCNVI--A-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLK-ALLKCPRL 94 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHH-------HHHHH--h-hhcceeEeehhhhhhcccHHHHHHHHHHHHH-HHhcCCcc
Confidence 334677888999999885322211 22223 3 6788888888865322 1 222 56688999
Q ss_pred cEEeCCCCCCc-ccc----cccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCCCCCCcccccccccccc
Q 044931 611 RYLGLRSTFID-SLP----KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWG 684 (889)
Q Consensus 611 r~L~L~~~~i~-~lp----~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~ 684 (889)
+..+||.|.+. +.| ..|+.-++|.+|.+++|.+-.+.. -|++ .|.||-... ....-+.|+ .
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~nK--------Kaa~kp~Le---~ 161 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAYNK--------KAADKPKLE---V 161 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHHHh--------hhccCCCce---E
Confidence 99999999776 444 456777899999999997764432 1321 122222211 001111111 1
Q ss_pred cccccCC---C---ccccCCCCCCCCCeeecccCch-hh-----HHHHHhhhcccccccceecccCCccccccccccccc
Q 044931 685 LSIESYT---P---FRQSDSTKWPRLIKLGVKCDSQ-MA-----IEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRG 752 (889)
Q Consensus 685 ~~~~~~~---~---~~~~~l~~l~~L~~L~l~~~~~-~~-----l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~ 752 (889)
+.+.++. + .....+..-.+|+.+.+..+.. .. ....+..+.+|+.|+++.+.+. ..-+..|.
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft-----~~gS~~La- 235 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT-----LEGSRYLA- 235 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh-----hhhHHHHH-
Confidence 2222210 0 0111123335667777766653 21 1222333444555554432111 11111110
Q ss_pred cccccccccccccCCCccEEEeeccCCCCCCchhh------hcCCCCCeEEeecCccCCCccee------CCCCCCcccE
Q 044931 753 SIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLL------EELAHLNILRLYRGAYLGEETTC------SSGGFPQLRV 820 (889)
Q Consensus 753 ~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l------~~L~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~ 820 (889)
..+|. + +.|+.|.+..|.++......+ ...|+|..|....|...+..+.. .-+.+|-|..
T Consensus 236 --~al~~-----W-~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~ 307 (388)
T COG5238 236 --DALCE-----W-NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVD 307 (388)
T ss_pred --HHhcc-----c-chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHH
Confidence 12333 3 668899999997765544332 24688888888877665544332 2356888888
Q ss_pred EEccccC
Q 044931 821 LKLWNLF 827 (889)
Q Consensus 821 L~l~~~~ 827 (889)
|.+.+|.
T Consensus 308 le~ngNr 314 (388)
T COG5238 308 LERNGNR 314 (388)
T ss_pred HHHccCc
Confidence 8888886
No 168
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.051 Score=61.33 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=86.7
Q ss_pred cccccchhhhH--HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccC-C-ceEEEEeCCcccHHHHHHH
Q 044931 171 EINLVGLEEQI--NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF-A-KRAWVRVRSEAKVRDVLID 246 (889)
Q Consensus 171 ~~~~vGr~~~~--~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~v~~~~~~~~~~~~ 246 (889)
+..++|-.... ....+.....+ ...-+.|+|.+|+|||+||+++++ .+.... + .++|++. .+++.+
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~--~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~ 174 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPG--RYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLND 174 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcC--CCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHH
Confidence 34455744332 23333333222 234599999999999999999999 444433 3 3566643 344445
Q ss_pred HHHHhhhhhcccCCCCHHHHHHhHh-------hhhHH------hH-HHHHhhhccCCCCCCCcEEEEEcCCC-CCc----
Q 044931 247 ILQQINDEMLVEASSPEEELASSLA-------TLTQQ------VW-QVLRNSLYYSSSKSRDGKIILTTSDE-NNI---- 307 (889)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~l~~~l~-------v~~~~------~~-~~l~~~l~~~~~~~~gs~iivTTR~~-~~v---- 307 (889)
+...+... ..+....+.+ +++.+ .+ +.+...+.... ..|..||+||... ..+
T Consensus 175 ~~~~~~~~-------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 175 LVDSMKEG-------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred HHHHHhcc-------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHH
Confidence 54444221 1112222211 11111 01 12222221110 1245688888532 211
Q ss_pred ---ccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCC
Q 044931 308 ---PLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGL 367 (889)
Q Consensus 308 ---~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 367 (889)
...+... .++++++.+.+.-.+++.+.+. ... ...+ +++..-|++.+.|.
T Consensus 246 ~rL~SR~~~g-l~v~i~~pd~e~r~~IL~~~~~-~~~----~~l~----~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 246 DRLVSRFQMG-LVAKLEPPDEETRKKIARKMLE-IEH----GELP----EEVLNFVAENVDDN 298 (440)
T ss_pred HHHhhHHhcC-ceEeeCCCCHHHHHHHHHHHHH-hcC----CCCC----HHHHHHHHhccccC
Confidence 1112222 5788999999999999998875 322 1233 45566777776664
No 169
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.43 E-value=0.0021 Score=58.48 Aligned_cols=21 Identities=48% Similarity=0.768 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
||+|.|.+|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 170
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.41 E-value=0.046 Score=60.49 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=39.1
Q ss_pred ccccccchhhhHHHHHHHHhcc----C------CCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 170 QEINLVGLEEQINNLVSLLIRE----H------NHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~----~------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.++.|.+..+++|.+.+... + -...+-|.++|.+|.|||+||+++++.
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999888876421 0 024677999999999999999999983
No 171
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00027 Score=70.44 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=79.7
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCch--hhhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPD--SIWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L 659 (889)
.+.+.+.|++.||.+..+. .+.+|+.|++|.|+-|.|++| ..+..+++|+.|.|+.|.|..+-+ .+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 5677888999999987664 477899999999999999999 578899999999999998887753 57788999999
Q ss_pred ccccccCC-CCCC-----Ccccccccccccccccc
Q 044931 660 YLNWIHSP-IDGL-----SLSSLNNLQTLWGLSIE 688 (889)
Q Consensus 660 ~l~~~~~~-~~~~-----~i~~l~~L~~L~~~~~~ 688 (889)
-|..|... ..+. .+.-|++|+.|....+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 98765421 1111 24556777777555443
No 172
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.40 E-value=0.0044 Score=59.41 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=44.5
Q ss_pred CCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcce---ecccCcccccc
Q 044931 767 PNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEW---TVEKGAMPRLR 843 (889)
Q Consensus 767 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~lp~L~ 843 (889)
++|..|.|++|.++...+....-+|+|..|.|.+|++..-.-......+|+|++|.+-+|+.-..- ..-+..+|+|+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~ 143 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR 143 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce
Confidence 666666666666654444444455666666666655543322334455666666666666532110 11233466666
Q ss_pred eeeccc
Q 044931 844 ELEIRS 849 (889)
Q Consensus 844 ~L~l~~ 849 (889)
.|++++
T Consensus 144 ~LDF~k 149 (233)
T KOG1644|consen 144 TLDFQK 149 (233)
T ss_pred Eeehhh
Confidence 666654
No 173
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.37 E-value=0.014 Score=70.51 Aligned_cols=45 Identities=29% Similarity=0.493 Sum_probs=38.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.+|||+++++++++.|..... .-+.++|.+|+|||++|+.+++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~---~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK---NNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC---CceEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999877642 34679999999999999999883
No 174
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.29 E-value=0.00053 Score=79.33 Aligned_cols=233 Identities=23% Similarity=0.190 Sum_probs=128.4
Q ss_pred hccccCCcEEeCCCC-CCcc--cccccCCCCCCcEEeecCC--CcccCc----hhhhhcccccccccccccCCCCCCCcc
Q 044931 604 IGKLLNLRYLGLRST-FIDS--LPKSVGILPRLETLDVKHT--KLRFLP----DSIWKAKKLQHLYLNWIHSPIDGLSLS 674 (889)
Q Consensus 604 i~~l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~--~l~~lp----~~i~~L~~L~~L~l~~~~~~~~~~~i~ 674 (889)
...+++|+.|.+..+ .+.. +-.....+++|+.|++++| .+...+ .....+.+|++|+++++... ...++.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i-sd~~l~ 262 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV-TDIGLS 262 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc-CchhHH
Confidence 334788999988876 4444 4356678899999999983 222222 23455788999999887631 111221
Q ss_pred ----ccccccccccccccc-CCCc-cccCCCCCCCCCeeecccCch---hhHHHHHhhhcccccccceecccCCcccccc
Q 044931 675 ----SLNNLQTLWGLSIES-YTPF-RQSDSTKWPRLIKLGVKCDSQ---MAIEFIINLLVCARTDGLVEIEYGEARVTTL 745 (889)
Q Consensus 675 ----~l~~L~~L~~~~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~---~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L 745 (889)
.+++|++|. +.... .+.. .......+++|+.|++..+.. ..+.....++++|+.|.+... ..++.+
T Consensus 263 ~l~~~c~~L~~L~-l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~----~~c~~l 337 (482)
T KOG1947|consen 263 ALASRCPNLETLS-LSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL----NGCPSL 337 (482)
T ss_pred HHHhhCCCcceEc-cCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc----CCCccH
Confidence 245677765 32222 1222 222334567788888887763 334444555666666544321 124556
Q ss_pred cccccccccc----ccccccccccCCCccEEEeeccCCCCCC-chhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccE
Q 044931 746 QELYLRGSIH----SFFDYGIEWNYPNLKILTLSMSRLVYDP-MPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRV 820 (889)
Q Consensus 746 ~~L~l~~~~~----~~p~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 820 (889)
+.+.+.+... .... .....+++++.+.+..+...... ...+..+|+|. ..+.. ....+.+|+.
T Consensus 338 ~~~~l~~~~~~~~d~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~----------~~~~~~~l~~ 405 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAE-LILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL----------RLCRSDSLRV 405 (482)
T ss_pred HHHHHHHhhccCchhHhH-HHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH----------HhccCCccce
Confidence 6666655332 2222 22233477777777777744333 24556666663 32221 1112223778
Q ss_pred EEccccCCCcceec-ccCc-ccccceeecccccCCC
Q 044931 821 LKLWNLFSLEEWTV-EKGA-MPRLRELEIRSCNNLK 854 (889)
Q Consensus 821 L~l~~~~~l~~~~~-~~~~-lp~L~~L~l~~C~~L~ 854 (889)
|++..|.....-.. .... +.++..+.+.+|+.+.
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 88887764432211 1111 6677888888877666
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.28 E-value=0.02 Score=68.46 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=37.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.++||+++++++++.|..... .-+.++|.+|+|||++|+.+++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~---~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK---NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC---CCeEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988532 3356899999999999999987
No 176
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.003 Score=63.17 Aligned_cols=91 Identities=21% Similarity=0.131 Sum_probs=67.0
Q ss_pred CceeeeEEEecCc--ccC-CCChHHhccccCCcEEeCCCCCCcccc--cccCCCCCCcEEeecCCCcccCch----hhhh
Q 044931 582 GFVLLTVLDLEGV--YKL-KLSDDVIGKLLNLRYLGLRSTFIDSLP--KSVGILPRLETLDVKHTKLRFLPD----SIWK 652 (889)
Q Consensus 582 ~l~~Lr~L~L~~~--~i~-~l~~~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~ 652 (889)
.+++|+.|.++.| .+. .++. ...++++|++|+|++|.|..+. ..+..+.||..|++.+|..+.+-. .+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 7888999999999 444 4555 5667799999999999877432 356678889999999997665532 3455
Q ss_pred cccccccccccccCCCCCCCc
Q 044931 653 AKKLQHLYLNWIHSPIDGLSL 673 (889)
Q Consensus 653 L~~L~~L~l~~~~~~~~~~~i 673 (889)
+++|.+|+-........|...
T Consensus 142 l~~L~~LD~~dv~~~Ea~~~~ 162 (260)
T KOG2739|consen 142 LPSLKYLDGCDVDGEEAPEAD 162 (260)
T ss_pred hhhhccccccccCCccccccc
Confidence 899999988776655555443
No 177
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.22 E-value=0.049 Score=61.75 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=38.6
Q ss_pred cccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-.++.|.+..+++|.+.+... +-...+-|.++|.+|.|||++|+++++.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 356889999999988876421 1124566899999999999999999994
No 178
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.22 E-value=0.018 Score=59.04 Aligned_cols=183 Identities=17% Similarity=0.131 Sum_probs=106.4
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceE-EEEeCCcccHH---HHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRA-WVRVRSEAKVR---DVLID 246 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~v~~~~~~~---~~~~~ 246 (889)
-.+++|-+..+.-|.+.+... ...+...||.+|.|||+-|++.....--.+.|.+++ =.++|....+. +-.+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~---~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR---ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc---CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 367899999999999999883 678899999999999999888876322234565543 34555443222 11111
Q ss_pred HHHHhhhhhccc-CCCCH--HHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCC
Q 044931 247 ILQQINDEMLVE-ASSPE--EELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRL 323 (889)
Q Consensus 247 i~~~l~~~~~~~-~~~~~--~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L 323 (889)
..+-........ ..... --+.+.-.....+.|..++..+.+. ...+|.|.++-.-..+.........-|..++|
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~---s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF---SRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc---ccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 111110000000 00000 0000000023347899999888776 66777666554432132222222266889999
Q ss_pred ChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc
Q 044931 324 NEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP 368 (889)
Q Consensus 324 ~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 368 (889)
..++...-+...+- ..+. +-..+..+.|++.++|--
T Consensus 189 ~d~~iv~rL~~Ia~-~E~v--------~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 189 KDEDIVDRLEKIAS-KEGV--------DIDDDALKLIAKISDGDL 224 (346)
T ss_pred chHHHHHHHHHHHH-HhCC--------CCCHHHHHHHHHHcCCcH
Confidence 99999999988886 4432 223556678888888743
No 179
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.14 E-value=1.4 Score=48.17 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=92.9
Q ss_pred CCcEEEEEcCCCCCccccccc-----CCCeeeccCCChhhHHHHHHHHhcCCCcccc--------CCCCCC----hhHHH
Q 044931 293 RDGKIILTTSDENNIPLEAKA-----AGSTLHVRRLNEEESWKLLLKRALLPRAAES--------DGLFNN----SELVT 355 (889)
Q Consensus 293 ~gs~iivTTR~~~~v~~~~~~-----~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~--------~~~~~~----~~~~~ 355 (889)
+-..||++|-+.. ....... ..+.+.|...+.+.|.++...+.. .....+ +...+. .....
T Consensus 182 nIAHVIFlT~dv~-~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (431)
T PF10443_consen 182 NIAHVIFLTDDVS-YSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD-EDTEDSSDSKESNEQNKNDKSAENEKDLA 259 (431)
T ss_pred CccEEEEECCCCc-hhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc-ccccccccccccccccccccccccccchH
Confidence 3457899888765 4443221 126788999999999999998875 321100 000000 12334
Q ss_pred HHHHHHHHhCCCchHHHHHhhhhhcccCCChhhHHHHHHhcccCCCchhhHHHHHHhhc-cccc------cchhhhhhhc
Q 044931 356 FKERILKKCGGLPIRIVLLGGLLSATKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQ-ELPS------KLKPFFFYMW 428 (889)
Q Consensus 356 ~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~-~L~~------~~k~cf~~~s 428 (889)
.....++.+||=-.-+..+++.++.-... .+.-+.+.++ .+..+.+.-+. +-+. ...+-...+-
T Consensus 260 eld~~i~~LGGRltDLe~lvrRiksGe~p-~~Av~~iI~q--------sa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk 330 (431)
T PF10443_consen 260 ELDECIEPLGGRLTDLEFLVRRIKSGESP-EEAVEEIISQ--------SASEIRKMFLLDDSDDAKSLKWTREQAWYLIK 330 (431)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHcCCCH-HHHHHHHHHH--------HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Confidence 45677788899888899999888874432 3444444432 23333333222 1111 0111111122
Q ss_pred cCCCCcccchhhhhhhhcccCCcCCCchhHHHHHHHHHHHhcceeeeccccCCCcceeec
Q 044931 429 FFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRL 488 (889)
Q Consensus 429 ~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~m 488 (889)
..-+.-.++..+++..- .....++..+..|....||..... +|.+..++-
T Consensus 331 ~Ls~~~~v~Y~~ll~~~--------lFk~~~E~~L~aLe~aeLItv~~~--~G~p~~I~p 380 (431)
T PF10443_consen 331 LLSKNDEVPYNELLLSP--------LFKGNDETALRALEQAELITVTTD--NGRPSTIRP 380 (431)
T ss_pred HhccCCcCcHHHHHccc--------ccCCCChHHHHHHHHCCcEEEEec--CCcCCeeEC
Confidence 22233334444443310 111125668999999999987653 455555554
No 180
>PF14516 AAA_35: AAA-like domain
Probab=96.14 E-value=0.23 Score=53.93 Aligned_cols=193 Identities=14% Similarity=0.192 Sum_probs=107.0
Q ss_pred ccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc-----ccHHHHH
Q 044931 170 QEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE-----AKVRDVL 244 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~ 244 (889)
+.+..|+|...-+++.+.|...+ ..+.|.|.-.+|||+|...+.+..+. ..+ .++++++..- .+..+.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G----~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG----SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC----CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHH
Confidence 34567788877778888887643 58999999999999999999884322 233 3557766542 2455555
Q ss_pred HHHHHHhhhhhcc-----c-------CCCCHHH-HHHhH-h---------------hhh-----HHhHHHHHhhhccCCC
Q 044931 245 IDILQQINDEMLV-----E-------ASSPEEE-LASSL-A---------------TLT-----QQVWQVLRNSLYYSSS 290 (889)
Q Consensus 245 ~~i~~~l~~~~~~-----~-------~~~~~~~-l~~~l-~---------------v~~-----~~~~~~l~~~l~~~~~ 290 (889)
+.++..+.....- + ....... +.+.+ . +.+ .+-+..++........
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 5555544433220 0 0011111 11111 1 111 1223333332221100
Q ss_pred CC-CCc-E-EEEEcCCCCCcccc----cccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHH
Q 044931 291 KS-RDG-K-IILTTSDENNIPLE----AKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKK 363 (889)
Q Consensus 291 ~~-~gs-~-iivTTR~~~~v~~~----~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~ 363 (889)
.. -.. + |++-+......... ++.. ..++|++++.+|...|..++-. . .. ....++|...
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg-~~i~L~~Ft~~ev~~L~~~~~~-~--------~~----~~~~~~l~~~ 228 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIG-QPIELPDFTPEEVQELAQRYGL-E--------FS----QEQLEQLMDW 228 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccc-cceeCCCCCHHHHHHHHHhhhc-c--------CC----HHHHHHHHHH
Confidence 00 011 1 22222111101111 1112 6789999999999999988754 1 11 1228899999
Q ss_pred hCCCchHHHHHhhhhhccc
Q 044931 364 CGGLPIRIVLLGGLLSATK 382 (889)
Q Consensus 364 c~GlPLai~~~g~~L~~~~ 382 (889)
+||+|--+..++..+....
T Consensus 229 tgGhP~Lv~~~~~~l~~~~ 247 (331)
T PF14516_consen 229 TGGHPYLVQKACYLLVEEQ 247 (331)
T ss_pred HCCCHHHHHHHHHHHHHcc
Confidence 9999999999999997653
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.061 Score=58.29 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=81.4
Q ss_pred cccc-hhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc--------------------ccCCceEE
Q 044931 173 NLVG-LEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK--------------------RHFAKRAW 231 (889)
Q Consensus 173 ~~vG-r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~w 231 (889)
.++| -+..++.+...+..+. -....-++|..|+||||+|+.+.+..--. .|.|. .+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~--l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~ 82 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR--LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HL 82 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EE
Confidence 4667 6666777777776553 45678999999999999998886521100 02222 22
Q ss_pred EEe-CCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCC
Q 044931 232 VRV-RSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDE 304 (889)
Q Consensus 232 v~v-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~ 304 (889)
+.. +....+.+ .+++.+.+..... .. ..++. ++ +.+..+.+...+..- ..++.+|++|.+.
T Consensus 83 i~~~~~~i~id~-ir~l~~~~~~~~~--~~------~~kvviI~~a~~~~~~a~NaLLK~LEEP---p~~~~~Il~t~~~ 150 (329)
T PRK08058 83 VAPDGQSIKKDQ-IRYLKEEFSKSGV--ES------NKKVYIIEHADKMTASAANSLLKFLEEP---SGGTTAILLTENK 150 (329)
T ss_pred eccccccCCHHH-HHHHHHHHhhCCc--cc------CceEEEeehHhhhCHHHHHHHHHHhcCC---CCCceEEEEeCCh
Confidence 211 11122222 2223333221110 00 00111 22 223455666666654 5677777777665
Q ss_pred CCcccccccCCCeeeccCCChhhHHHHHHH
Q 044931 305 NNIPLEAKAAGSTLHVRRLNEEESWKLLLK 334 (889)
Q Consensus 305 ~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~ 334 (889)
..+..........+++.+++.++..+.+..
T Consensus 151 ~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 151 HQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 534444444447899999999999877764
No 182
>PRK08116 hypothetical protein; Validated
Probab=96.12 E-value=0.049 Score=57.01 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=27.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.-+.++|..|+|||.||.++++. ...+--.++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH
Confidence 45889999999999999999994 4333334566643
No 183
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.094 Score=57.32 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=95.0
Q ss_pred cccccchhhhH-HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHH
Q 044931 171 EINLVGLEEQI-NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 171 ~~~~vGr~~~~-~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
+..++|-.... ..+...........-..+-|||..|.|||.|++++.+ ...........+.++. .....+++.
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~ 160 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVK 160 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHH
Confidence 45566754433 2333333332221467899999999999999999999 5666665433344433 233333333
Q ss_pred HhhhhhcccCCCCHHHHHHhHh-----hhh----------HHhHHHHHhhhccCCCCCCCcEEEEEcCCCC-C-------
Q 044931 250 QINDEMLVEASSPEEELASSLA-----TLT----------QQVWQVLRNSLYYSSSKSRDGKIILTTSDEN-N------- 306 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~~l~~~l~-----v~~----------~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~-~------- 306 (889)
.+.... .+..++... ++| .+..-.+...+... |-.||+|++... .
T Consensus 161 a~~~~~-------~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~-----~kqIvltsdr~P~~l~~~~~r 228 (408)
T COG0593 161 ALRDNE-------MEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN-----GKQIVLTSDRPPKELNGLEDR 228 (408)
T ss_pred HHHhhh-------HHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhc-----CCEEEEEcCCCchhhccccHH
Confidence 332211 011111111 111 11222233334433 448999986432 0
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
+...+... -++++.+.+.+.....+.+.+. ... ...|+.-..-++..+-+-..-+.-|+..+.
T Consensus 229 L~SR~~~G-l~~~I~~Pd~e~r~aiL~kka~-~~~----~~i~~ev~~~la~~~~~nvReLegaL~~l~ 291 (408)
T COG0593 229 LRSRLEWG-LVVEIEPPDDETRLAILRKKAE-DRG----IEIPDEVLEFLAKRLDRNVRELEGALNRLD 291 (408)
T ss_pred HHHHHhce-eEEeeCCCCHHHHHHHHHHHHH-hcC----CCCCHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 22233444 7899999999999999999775 433 234423333344444444444444444433
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.1 Score=55.78 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=52.6
Q ss_pred hHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHH
Q 044931 277 VWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTF 356 (889)
Q Consensus 277 ~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~ 356 (889)
.-..+...+-.- ..++.+|++|.+.+.+..........+.+.+++.+++.+.+..... + ...
T Consensus 129 AaNaLLKtLEEP---p~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~-------------~--~~~ 190 (319)
T PRK08769 129 ACNALLKTLEEP---SPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQGV-------------S--ERA 190 (319)
T ss_pred HHHHHHHHhhCC---CCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCC-------------C--hHH
Confidence 344455555444 4577777777765535444443337789999999999888865311 1 122
Q ss_pred HHHHHHHhCCCchHHHHHh
Q 044931 357 KERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 357 ~~~I~~~c~GlPLai~~~g 375 (889)
+..++..++|.|+.+..+.
T Consensus 191 a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 191 AQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHHHHHHcCCCHHHHHHHh
Confidence 6678999999998765554
No 185
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.0059 Score=56.35 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..-|+|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 356899999999999999999983
No 186
>PRK07667 uridine kinase; Provisional
Probab=95.89 E-value=0.016 Score=57.61 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 181 INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 181 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+.+.+..... ...+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~-~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKE-NRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566667766554 558999999999999999999988
No 187
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.86 E-value=0.0022 Score=74.15 Aligned_cols=238 Identities=17% Similarity=0.032 Sum_probs=110.0
Q ss_pred cccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCc-c-cCCCC---hHHhccccCCcEEeCCCC
Q 044931 544 WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGV-Y-KLKLS---DDVIGKLLNLRYLGLRST 618 (889)
Q Consensus 544 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~-i~~l~---~~~i~~l~~Lr~L~L~~~ 618 (889)
.++.|+.|.+.++...... ....+. . .++.|+.|+++++ . +...+ ......+.+|+.|+++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~----------~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD----------SLDALA-L-KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred hCchhhHhhhcccccCChh----------hHHHHH-h-hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 3667777777666542211 122222 3 6677777777763 1 11111 113334566777777766
Q ss_pred C-Ccccc-cccC-CCCCCcEEeecCCC-cc--cCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCC
Q 044931 619 F-IDSLP-KSVG-ILPRLETLDVKHTK-LR--FLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTP 692 (889)
Q Consensus 619 ~-i~~lp-~~i~-~L~~L~~L~L~~~~-l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~ 692 (889)
. ++..- ..+. .+++|++|.+.+|. ++ .+-.....+++|++|++++|... . ..
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~-------~---------------d~ 311 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL-------T---------------DS 311 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc-------h---------------HH
Confidence 5 33211 1122 26677777766663 44 22233445666777777765422 0 00
Q ss_pred ccccCCCCCCCCCeeecccCc---h-hhH-HHHHhhh--cccccccceecccCCcccccccccccccccccccccccccc
Q 044931 693 FRQSDSTKWPRLIKLGVKCDS---Q-MAI-EFIINLL--VCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWN 765 (889)
Q Consensus 693 ~~~~~l~~l~~L~~L~l~~~~---~-~~l-~~~l~~l--~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~ 765 (889)
.......++++|+.|.+.... . ..+ ...+... ..+..+.+ ..+++++.+.+.+.... .
T Consensus 312 ~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~-------~~~~~l~~~~l~~~~~~-~------- 376 (482)
T KOG1947|consen 312 GLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELIL-------RSCPKLTDLSLSYCGIS-D------- 376 (482)
T ss_pred HHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHH-------hcCCCcchhhhhhhhcc-C-------
Confidence 011112234445544433332 1 111 1111111 12333322 46778888877653311 0
Q ss_pred CCCccEEEeeccCCCCCCchh-hhcCCCCCeEEeecCccCCCcceeCCCC-CCcccEEEccccCCCcce
Q 044931 766 YPNLKILTLSMSRLVYDPMPL-LEELAHLNILRLYRGAYLGEETTCSSGG-FPQLRVLKLWNLFSLEEW 832 (889)
Q Consensus 766 ~~~L~~L~L~~~~l~~~~~~~-l~~L~~L~~L~L~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~ 832 (889)
....+.+.+|......... .....+|+.|.+..+............. ...++.+.+.+++.....
T Consensus 377 --~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 377 --LGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred --cchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 0113334444311011111 2233348899998766544332222222 667788888887765443
No 188
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.13 Score=54.81 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=90.5
Q ss_pred HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccc-----cc--------------cccCCceEEEEeC---Ccc
Q 044931 181 INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV-----DV--------------KRHFAKRAWVRVR---SEA 238 (889)
Q Consensus 181 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-----~~--------------~~~F~~~~wv~v~---~~~ 238 (889)
.+.+.+.+..+. -...+-++|..|+||+++|+.+.... .. ..|-| ..|+.-. ...
T Consensus 12 ~~~l~~~~~~~r--l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (319)
T PRK06090 12 WQNWKAGLDAGR--IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHcCC--cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcC
Confidence 345555555443 45689999999999999998875521 00 01111 2333221 122
Q ss_pred cHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hhh-----HHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 239 KVRDVLIDILQQINDEMLVEASSPEEELASSLA-TLT-----QQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 239 ~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~~-----~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
.+.++ +++.+.+..... .. ..++. +++ ......+...+-.- .+++.+|++|.+.+.+.....
T Consensus 89 ~vdqi-R~l~~~~~~~~~--~~------~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 89 TVEQI-RQCNRLAQESSQ--LN------GYRLFVIEPADAMNESASNALLKTLEEP---APNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred CHHHH-HHHHHHHhhCcc--cC------CceEEEecchhhhCHHHHHHHHHHhcCC---CCCeEEEEEECChhhChHHHH
Confidence 22222 233322222110 00 00111 333 34566677766655 556777777766543554444
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.....+.+.+++.++..+.+..... + .+..++..++|.|+.+..+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~-------------~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQGI-------------T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcCC-------------c----hHHHHHHHcCCCHHHHHHHh
Confidence 4447899999999999988865311 1 13467889999999776553
No 189
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0042 Score=37.12 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=8.7
Q ss_pred CcEEeCCCCCCcccccccC
Q 044931 610 LRYLGLRSTFIDSLPKSVG 628 (889)
Q Consensus 610 Lr~L~L~~~~i~~lp~~i~ 628 (889)
|++|+|++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4444444444444444433
No 190
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.73 E-value=0.011 Score=66.59 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=39.0
Q ss_pred cccchhhhHHHHHHHHhc----cCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 173 NLVGLEEQINNLVSLLIR----EHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+++|.++.+++|++.|.. -+. .-+++.++|.+|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~-~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEE-KKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCC-CCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999932 222 558999999999999999999998
No 191
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.67 E-value=0.01 Score=72.68 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=38.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..++||+++++++++.|..... .-+.++|.+|+|||++|..+++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~---~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK---NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc---CCeEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999987642 34569999999999999999883
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.64 E-value=0.013 Score=65.20 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=39.6
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...++||++.++.+...+..+.. |.|.|.+|+|||+||+.+...
T Consensus 19 ~~~i~gre~vI~lll~aalag~h-----VLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGES-----VFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCCC-----EEEECCCChhHHHHHHHHHHH
Confidence 46799999999999999987754 899999999999999999983
No 193
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.58 E-value=0.027 Score=55.68 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred cchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEE
Q 044931 175 VGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVR 233 (889)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 233 (889)
..+..+....++.|.. ..+|.+.|.+|.|||.||.+..-+.-..+.|+.++++.
T Consensus 3 ~p~~~~Q~~~~~al~~-----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp ---SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred cCCCHHHHHHHHHHHh-----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3456667777777773 25899999999999999999887644567888888773
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.18 Score=54.09 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=52.8
Q ss_pred HhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHH
Q 044931 276 QVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVT 355 (889)
Q Consensus 276 ~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~ 355 (889)
.....+...+-.- ..++.+|++|.+.+.+..........+.+.+++.++..+.+..... . + ..
T Consensus 122 ~AaNaLLKtLEEP---p~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-~-----------~--~~ 184 (325)
T PRK06871 122 AAANALLKTLEEP---RPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-A-----------E--IS 184 (325)
T ss_pred HHHHHHHHHhcCC---CCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-c-----------C--hH
Confidence 4566666666555 5677778787776535443333337899999999999988887643 1 1 11
Q ss_pred HHHHHHHHhCCCchHH
Q 044931 356 FKERILKKCGGLPIRI 371 (889)
Q Consensus 356 ~~~~I~~~c~GlPLai 371 (889)
.+...+..++|.|+.+
T Consensus 185 ~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 185 EILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 2556788899999644
No 195
>PRK08181 transposase; Validated
Probab=95.54 E-value=0.071 Score=55.56 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=26.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.-+.|+|.+|+|||.||.++.+ ......-.++|+++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH
Confidence 3499999999999999999998 34333334566643
No 196
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.49 E-value=0.015 Score=56.84 Aligned_cols=36 Identities=39% Similarity=0.674 Sum_probs=29.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
...+|.|.|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 457999999999999999999998 555556666665
No 197
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.49 E-value=0.15 Score=52.27 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=33.5
Q ss_pred hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 180 QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.+..+.+....... +...+.++|.+|+|||+||.++++. ....-..++++++
T Consensus 84 al~~a~~~~~~~~~-~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~ 135 (244)
T PRK07952 84 ALSKARQYVEEFDG-NIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV 135 (244)
T ss_pred HHHHHHHHHHhhcc-CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH
Confidence 34444444433222 3457899999999999999999994 3333234566643
No 198
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.40 E-value=0.13 Score=51.29 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=83.2
Q ss_pred ccccccchhhhHHH---HHHHHhccC----CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc-----
Q 044931 170 QEINLVGLEEQINN---LVSLLIREH----NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE----- 237 (889)
Q Consensus 170 ~~~~~vGr~~~~~~---l~~~L~~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~----- 237 (889)
.-+++||-++.+.+ |++.|.+++ . .++-|..+|.+|.|||.+|+++.|. .+-.| +-|.+.+-
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~W-APknVLFyGppGTGKTm~Akalane--~kvp~---l~vkat~liGehV 192 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDW-APKNVLFYGPPGTGKTMMAKALANE--AKVPL---LLVKATELIGEHV 192 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhccc-CcceeEEECCCCccHHHHHHHHhcc--cCCce---EEechHHHHHHHh
Confidence 34679999887754 677776643 3 5788999999999999999999994 33222 22221111
Q ss_pred ccHHHHHHHHHHHhhhhhc-----cc-CCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCccccc
Q 044931 238 AKVRDVLIDILQQINDEML-----VE-ASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEA 311 (889)
Q Consensus 238 ~~~~~~~~~i~~~l~~~~~-----~~-~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~ 311 (889)
-+..+-.+++.+......+ ++ +....+.--+.++-+-.+....+..-+.... .+.|-..|-.|.+.. +....
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-eneGVvtIaaTN~p~-~LD~a 270 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-ENEGVVTIAATNRPE-LLDPA 270 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-cCCceEEEeecCChh-hcCHH
Confidence 0111111122211111111 00 1222233333444222233344444443321 134655666666655 33222
Q ss_pred -cc-CCCeeeccCCChhhHHHHHHHHhc
Q 044931 312 -KA-AGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 312 -~~-~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
.. ...-++...-+++|-.+++...+.
T Consensus 271 iRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 271 IRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred HHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 11 114566667788888888888774
No 199
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.014 Score=66.48 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=44.5
Q ss_pred cccccccchhhhHHHHHHHHhccCC---CCceEEEEECCCCCcHHHHHHHHhccccccccC
Q 044931 169 EQEINLVGLEEQINNLVSLLIREHN---HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF 226 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 226 (889)
.-+.+-+|.++.+++|++.|.-..- -.-.+++.||.+|||||.|++.|++ .....|
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 3456779999999999999965421 2347999999999999999999998 455554
No 200
>PRK12377 putative replication protein; Provisional
Probab=95.35 E-value=0.11 Score=53.54 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=29.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeC
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVR 235 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 235 (889)
...+.|+|.+|+|||+||.++++. .....-.++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 367999999999999999999994 44444446677553
No 201
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.31 E-value=0.045 Score=59.68 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=50.5
Q ss_pred cccccchhhhHHHHHHHHhcc-----------CCCCceEEEEECCCCCcHHHHHHHHhccccccccC---CceEEEEe-C
Q 044931 171 EINLVGLEEQINNLVSLLIRE-----------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF---AKRAWVRV-R 235 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v-~ 235 (889)
+..+||.++.++.+.-.+... +....+-|.++|.+|+|||++|+.+.. .....| +..-|+.. .
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCc
Confidence 367999999999987777642 111346789999999999999999988 333333 32222221 1
Q ss_pred CcccHHHHHHHHHHHh
Q 044931 236 SEAKVRDVLIDILQQI 251 (889)
Q Consensus 236 ~~~~~~~~~~~i~~~l 251 (889)
...+..++++.+....
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1224555555555443
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.12 Score=53.52 Aligned_cols=48 Identities=17% Similarity=0.327 Sum_probs=33.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhh
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQIN 252 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 252 (889)
.-+.++|.+|+|||.||.++.++ +...=-.+.++++ .+++.++.....
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~ 153 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFD 153 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHh
Confidence 45999999999999999999995 4432224566643 455555555443
No 203
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.28 E-value=0.0071 Score=36.11 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.9
Q ss_pred CCcEEeecCCCcccCchhhhhc
Q 044931 632 RLETLDVKHTKLRFLPDSIWKA 653 (889)
Q Consensus 632 ~L~~L~L~~~~l~~lp~~i~~L 653 (889)
+|++|||++|+++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999876653
No 204
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.25 E-value=0.067 Score=51.38 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=70.0
Q ss_pred chhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc------------------ccCCceEEEEeCCc
Q 044931 176 GLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK------------------RHFAKRAWVRVRSE 237 (889)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~~~~wv~v~~~ 237 (889)
|-++..+.+.+.+..+. -...+-++|..|+||+|+|..+.+..--. ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~--l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR--LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS
T ss_pred CcHHHHHHHHHHHHcCC--cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc
Confidence 44566677777776653 45678999999999999998876521111 12233445543332
Q ss_pred ---ccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcc
Q 044931 238 ---AKVRDVLIDILQQINDEMLVEASSPEEELASSLA------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIP 308 (889)
Q Consensus 238 ---~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~ 308 (889)
..+.++- ++...+....... ..++. -.+.+.+..++..+-.- ..++++|++|++.+.+.
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~~~~--------~~KviiI~~ad~l~~~a~NaLLK~LEep---p~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSPSEG--------KYKVIIIDEADKLTEEAQNALLKTLEEP---PENTYFILITNNPSKIL 146 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS-TTS--------SSEEEEEETGGGS-HHHHHHHHHHHHST---TTTEEEEEEES-GGGS-
T ss_pred cchhhHHHHH-HHHHHHHHHHhcC--------CceEEEeehHhhhhHHHHHHHHHHhcCC---CCCEEEEEEECChHHCh
Confidence 3333322 4444433222100 00000 12345677777777766 67899999998876444
Q ss_pred cccccCCCeeeccCCC
Q 044931 309 LEAKAAGSTLHVRRLN 324 (889)
Q Consensus 309 ~~~~~~~~~~~l~~L~ 324 (889)
.........+.++++|
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 4443333566666654
No 205
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.24 E-value=0.018 Score=70.38 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=38.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+|||+.++.++++.|..... .-+.++|.+|+|||++|..+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~---~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK---NNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc---CceEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999987642 34669999999999999999883
No 206
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.20 E-value=0.013 Score=53.81 Aligned_cols=21 Identities=48% Similarity=0.771 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~ 219 (889)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999983
No 207
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.16 E-value=0.035 Score=56.02 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=36.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVL 244 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 244 (889)
.-+++.|+|.+|+|||++|.++... ....-..++|++... ++...+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 5689999999999999999998773 333446799998875 5554433
No 208
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.16 E-value=0.32 Score=54.17 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=70.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-----h
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-----T 272 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-----v 272 (889)
++.|+|.-++||||+++.+... ..+. .+++...+......-+.+..+.+...... ++.. |
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~----------~~~yifLDEI 103 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAYIELKER----------EKSYIFLDEI 103 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHHHHhhcc----------CCceEEEecc
Confidence 9999999999999999776662 2222 55665443322222223333322221110 1111 4
Q ss_pred hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC----cccccccCCCeeeccCCChhhHHHHH
Q 044931 273 LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN----IPLEAKAAGSTLHVRRLNEEESWKLL 332 (889)
Q Consensus 273 ~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~----v~~~~~~~~~~~~l~~L~~~es~~Lf 332 (889)
.....|+.....+.+. ++. +|++|+-+... .+....+....+++-||+..|-..+-
T Consensus 104 q~v~~W~~~lk~l~d~---~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 104 QNVPDWERALKYLYDR---GNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred cCchhHHHHHHHHHcc---ccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 4557799888888887 555 89999876551 22233344477899999999987653
No 209
>PTZ00301 uridine kinase; Provisional
Probab=95.13 E-value=0.025 Score=56.66 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999999887
No 210
>PRK08233 hypothetical protein; Provisional
Probab=95.12 E-value=0.018 Score=56.73 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 211
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.09 E-value=0.018 Score=58.11 Aligned_cols=25 Identities=40% Similarity=0.789 Sum_probs=22.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999983
No 212
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.07 E-value=0.015 Score=57.89 Aligned_cols=21 Identities=48% Similarity=0.795 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988
No 213
>PRK06547 hypothetical protein; Provisional
Probab=95.04 E-value=0.03 Score=54.19 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=22.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+|+|.|.+|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999873
No 214
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.03 E-value=0.018 Score=46.22 Aligned_cols=22 Identities=41% Similarity=0.788 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=0.36 Score=52.19 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=53.1
Q ss_pred HhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHH
Q 044931 276 QVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVT 355 (889)
Q Consensus 276 ~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~ 355 (889)
.....+...+-.- ..++-+|++|.+.+.+..........+.+.+++.++..+.+..... . + .+
T Consensus 123 ~AaNaLLKtLEEP---p~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-~-----------~--~~ 185 (334)
T PRK07993 123 AAANALLKTLEEP---PENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT-M-----------S--QD 185 (334)
T ss_pred HHHHHHHHHhcCC---CCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-C-----------C--HH
Confidence 3455666666554 5577777777765535544333336789999999999888765422 1 1 22
Q ss_pred HHHHHHHHhCCCchHHHHH
Q 044931 356 FKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 356 ~~~~I~~~c~GlPLai~~~ 374 (889)
.+..++..++|.|.....+
T Consensus 186 ~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 186 ALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 3668899999999654433
No 216
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.43 Score=52.68 Aligned_cols=165 Identities=22% Similarity=0.207 Sum_probs=86.2
Q ss_pred HHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc--ccHHHH---HHHHHHHhhhhhcc-
Q 044931 184 LVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE--AKVRDV---LIDILQQINDEMLV- 257 (889)
Q Consensus 184 l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~---~~~i~~~l~~~~~~- 257 (889)
+++.+...+..++..+.+.|.+|+|||+||..+..+ ..|+.+=-++-... ++...- ++.+..........
T Consensus 526 lv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsi 601 (744)
T KOG0741|consen 526 LVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSI 601 (744)
T ss_pred HHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceE
Confidence 344444444346778889999999999999999873 56775443322111 111111 12222222111110
Q ss_pred cCCCCHHHHHHhHh---hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCccccccc---CCCeeeccCCCh-hhHHH
Q 044931 258 EASSPEEELASSLA---TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKA---AGSTLHVRRLNE-EESWK 330 (889)
Q Consensus 258 ~~~~~~~~l~~~l~---v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~---~~~~~~l~~L~~-~es~~ 330 (889)
-.-++.+.|.+..- -.+.-....+.-.+....++++.--|+-||.... |...|+- ....+.++.++. ++..+
T Consensus 602 ivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~-vL~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 602 IVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE-VLQEMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred EEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH-HHHHcCHHHhhhheeecCccCchHHHHH
Confidence 01233444444433 2333334444444444321123333444666665 6665543 226788998887 77777
Q ss_pred HHHHHh-cCCCccccCCCCCChhHHHHHHHHHHHh
Q 044931 331 LLLKRA-LLPRAAESDGLFNNSELVTFKERILKKC 364 (889)
Q Consensus 331 Lf~~~a-~~~~~~~~~~~~~~~~~~~~~~~I~~~c 364 (889)
.++..- | . + .+...++.+...+|
T Consensus 681 vl~~~n~f-s---------d-~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 681 VLEELNIF-S---------D-DEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHccCC-C---------c-chhHHHHHHHhccc
Confidence 777653 3 1 1 55666777777766
No 217
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.98 E-value=0.032 Score=52.54 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=27.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEE
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVR 233 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 233 (889)
..||-|.|.+|+||||||+++.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 5544444555553
No 218
>PRK06762 hypothetical protein; Provisional
Probab=94.97 E-value=0.02 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.++|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 219
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.96 E-value=0.02 Score=57.64 Aligned_cols=24 Identities=46% Similarity=0.818 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 220
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.96 E-value=0.082 Score=49.23 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=29.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
--+.|+|-||+||+++.+.+|.- -..+.+...+||+.
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 34779999999999999999973 22455677888854
No 221
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.88 E-value=0.062 Score=58.65 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=38.8
Q ss_pred cccccchhhhHHHHHHHHhcc--------CC---CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIRE--------HN---HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~--------~~---~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..++|.++.++.+..++... .. ...+.|.++|.+|+|||+||+.+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999998888651 00 1246799999999999999999988
No 222
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.87 E-value=0.028 Score=57.61 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=22.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|..|+|||||++.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999987
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.87 E-value=0.03 Score=52.05 Aligned_cols=38 Identities=34% Similarity=0.440 Sum_probs=27.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
..+.|+|.+|+||||+|+.+.+. .......++++..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEE
Confidence 57999999999999999999983 333323355554443
No 224
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.86 E-value=0.074 Score=54.09 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=32.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCccc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAK 239 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 239 (889)
.-.++.|+|.+|+||||+|.+++.. ....-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5689999999999999999998873 333334678887765544
No 225
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.78 E-value=0.44 Score=48.36 Aligned_cols=225 Identities=18% Similarity=0.184 Sum_probs=123.6
Q ss_pred cccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccc----ccccCCceEEEEeCCc----------c
Q 044931 173 NLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVD----VKRHFAKRAWVRVRSE----------A 238 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~~~F~~~~wv~v~~~----------~ 238 (889)
.+.++++....+....... ...-..++|..|.||-|.+..+.+... .+-+-+.+.|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~---d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG---DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hcccHHHHHHHHHHhcccC---CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 3777888888887776633 568899999999999998877655311 1112233445433222 1
Q ss_pred -----------cHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh--hh------hHHhHHHHHhhhccCCCCCCCcEEEE
Q 044931 239 -----------KVRDVLIDILQQINDEMLVEASSPEEELASSLA--TL------TQQVWQVLRNSLYYSSSKSRDGKIIL 299 (889)
Q Consensus 239 -----------~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~--v~------~~~~~~~l~~~l~~~~~~~~gs~iiv 299 (889)
.-+-+.++++++......-+. ..+...+ |. ..|.-..++.-...- .+.+|+|+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~-----~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY---s~~~RlIl 162 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----QGQRPFKVVVINEADELTRDAQHALRRTMEKY---SSNCRLIL 162 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----ccccceEEEEEechHhhhHHHHHHHHHHHHHH---hcCceEEE
Confidence 122344444444433221000 0000111 11 112333344433333 45778877
Q ss_pred EcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhh
Q 044931 300 TTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLS 379 (889)
Q Consensus 300 TTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~ 379 (889)
.--+-+-+-.......-.+++..-+++|-...+++.+- ..+. ..| ++++.+|+++++|.---...+-..++
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~-kE~l----~lp----~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLK-KEGL----QLP----KELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHH-Hhcc----cCc----HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 54332212222333325688999999999999998876 4332 222 78899999999886433222222222
Q ss_pred cc------c--CCChhhHHHHHHhccc----CCCchhhHHHHHHhhcccc
Q 044931 380 AT------K--GRNFQKWSSVIERADV----DKSDGWVSGLLALSYQELP 417 (889)
Q Consensus 380 ~~------~--~~~~~~w~~~l~~l~~----~~~~~~i~~~l~~Sy~~L~ 417 (889)
-+ . .-+.-+|+-++.+... .+....+..+-..-|+-|.
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~ 283 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLS 283 (351)
T ss_pred hccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 11 1 1135689988887665 4555666666666677664
No 226
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.046 Score=62.22 Aligned_cols=68 Identities=19% Similarity=0.406 Sum_probs=49.4
Q ss_pred ccccccchhhhHHHHHHHHhccC---CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHH
Q 044931 170 QEINLVGLEEQINNLVSLLIREH---NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRD 242 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 242 (889)
-+.+-+|.++-+++|.+.+.-.. ..+-++++.+|.+|||||.+|+.|+. .....| +-++|+.-.|..+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAe 479 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAE 479 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHh
Confidence 35677999999999999996532 12568999999999999999999998 443333 1244555545443
No 227
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.76 E-value=0.048 Score=49.88 Aligned_cols=41 Identities=20% Similarity=0.420 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccc
Q 044931 179 EQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 220 (889)
++.+++-+.|...-. .-.+|.+.|.-|.||||+++.+.+..
T Consensus 6 ~~t~~l~~~l~~~l~-~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD-FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344555555544322 34689999999999999999999843
No 228
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.031 Score=51.73 Aligned_cols=45 Identities=29% Similarity=0.487 Sum_probs=33.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhh
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEM 255 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 255 (889)
+|+|-|.+|.||||+|+.+.++.... .| +...++++|++..+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999842211 12 34468888888766543
No 229
>PHA00729 NTP-binding motif containing protein
Probab=94.73 E-value=0.038 Score=55.30 Aligned_cols=34 Identities=32% Similarity=0.347 Sum_probs=25.9
Q ss_pred HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 183 NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 183 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
++++.+... +...|.|.|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~---~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNN---GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcC---CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444443 4467999999999999999999883
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.70 E-value=0.07 Score=52.94 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=38.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc-ccHHHHHHHHHHHhhhhh
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE-AKVRDVLIDILQQINDEM 255 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~ 255 (889)
++||.++|..|+||||.+.+++. +.+.+-..+..++.... ....+-++..++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 47999999999999998877776 33333335667776432 345566677777776653
No 231
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.70 E-value=0.024 Score=53.21 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 232
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.70 E-value=0.057 Score=65.17 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=40.3
Q ss_pred ccccccchhhhHHHHHHHHhccC---CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 170 QEINLVGLEEQINNLVSLLIREH---NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-+.+.+|.++.+++|.++|.... .....++.++|.+|+||||+|+.+..
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999887421 11446899999999999999999987
No 233
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=0.59 Score=51.08 Aligned_cols=198 Identities=13% Similarity=0.178 Sum_probs=109.7
Q ss_pred cccccccchhhhHHHHHHHHhccCC-CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHH
Q 044931 169 EQEINLVGLEEQINNLVSLLIREHN-HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 247 (889)
..+..++||+.++..+.+++...-+ +..+.+-|.|-+|.|||.+...++.+..-...=..+++++...-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 3457899999999999999987533 356788999999999999999999853322111234666555445677888888
Q ss_pred HHHhhhhhcccCCCCHHHHHHhHh------------hhhHHhHHHHH--------h--hhccCCCCCCCcEEEEEc----
Q 044931 248 LQQINDEMLVEASSPEEELASSLA------------TLTQQVWQVLR--------N--SLYYSSSKSRDGKIILTT---- 301 (889)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~l~~~l~------------v~~~~~~~~l~--------~--~l~~~~~~~~gs~iivTT---- 301 (889)
...+..... ......+....+. |.| +.|.+. . .||. -+++|+|+.=
T Consensus 227 ~~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlD--EmD~L~tr~~~vLy~lFewp~----lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 227 FSSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLD--EMDHLITRSQTVLYTLFEWPK----LPNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEec--hhhHHhhcccceeeeehhccc----CCcceeeeeeehhh
Confidence 888733322 1111112222221 222 222221 1 1222 2566665532
Q ss_pred -----CCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 044931 302 -----SDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGG 376 (889)
Q Consensus 302 -----R~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~ 376 (889)
|--.-+-......+..+..++-+.++-.++|..+.- ..... ...+ ..++-.|++++.-.|-+--|+.+.-+
T Consensus 299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~-~~~t~--~~~~-~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS-EESTS--IFLN-AAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh-ccccc--ccch-HHHHHHHHHhccCchhHHHHHHHHHH
Confidence 210000000112236788899999999999998875 22211 1111 23344444444444555555555544
Q ss_pred hh
Q 044931 377 LL 378 (889)
Q Consensus 377 ~L 378 (889)
.+
T Consensus 375 ai 376 (529)
T KOG2227|consen 375 AI 376 (529)
T ss_pred HH
Confidence 44
No 234
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.68 E-value=0.35 Score=55.82 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=36.2
Q ss_pred ccccccchhhhHHHHHHHHh---ccC------CCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 170 QEINLVGLEEQINNLVSLLI---REH------NHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~---~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.+++|.++.++++.+.+. ... ....+-+.++|.+|.|||+||+.+++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34678998888776665443 211 123456889999999999999999984
No 235
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.67 E-value=0.085 Score=54.36 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=38.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccccc----CCceEEEEeCCcccHHHHHHHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH----FAKRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
.-.++.|+|.+|+|||+||.+++-....... -..++|++....++...+ .++++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 5589999999999999999998753222221 257999998887665443 334433
No 236
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.67 E-value=0.24 Score=60.15 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=38.5
Q ss_pred ccccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 170 QEINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-+++.|.++.+++|.+++... .-...+-|.++|.+|.|||+||+.+++
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 3356889999999998887431 002346788999999999999999998
No 237
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.66 E-value=0.073 Score=54.41 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=34.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRD 242 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 242 (889)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 5679999999999999999998873 33344678999887 555443
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.64 E-value=0.26 Score=53.10 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.-+.++|..|+|||.||.++++. ....--.++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 66999999999999999999994 3332234666654
No 239
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.58 E-value=0.025 Score=52.16 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=31.3
Q ss_pred EEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc-----cHHHHHHHHHHHhh
Q 044931 199 IAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA-----KVRDVLIDILQQIN 252 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-----~~~~~~~~i~~~l~ 252 (889)
|.|+|.+|+||||+|+.+++. ... ..+.++.+... +..+.+..++++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~---~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGF---PFIEIDGSELISSYAGDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTS---EEEEEETTHHHTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh--ccc---cccccccccccccccccccccccccccccc
Confidence 579999999999999999994 321 23445443332 23445555555543
No 240
>CHL00176 ftsH cell division protein; Validated
Probab=94.58 E-value=0.37 Score=56.77 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=35.2
Q ss_pred ccccchhhhHHHHHHHH---hccC------CCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLL---IREH------NHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L---~~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+++|.++.++++.+.+ .... ....+-|.++|.+|.|||+||+++++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56889888776665554 3221 123456999999999999999999883
No 241
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.57 E-value=0.047 Score=52.66 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=34.7
Q ss_pred ccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 174 LVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+||.+..+.++.+.+..-.. ...-|.|+|..|.||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~-~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-SDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-STS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-CCCCEEEEcCCCCcHHHHHHHHHH
Confidence 58889999999988877544 335577999999999999999998
No 242
>PRK04040 adenylate kinase; Provisional
Probab=94.56 E-value=0.027 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 243
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.56 E-value=0.035 Score=68.21 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=38.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+|||++++.++++.|..... .-+.++|.+|+|||++|..+.+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~---~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK---NNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC---CceEEEcCCCCCHHHHHHHHHHH
Confidence 4599999999999999987642 34568999999999999998883
No 244
>PRK03839 putative kinase; Provisional
Probab=94.53 E-value=0.026 Score=55.41 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999983
No 245
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.48 E-value=0.32 Score=55.02 Aligned_cols=176 Identities=18% Similarity=0.145 Sum_probs=98.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
+++||-+.-...|...+.... -.......|.-|+||||+|+.+... +... -| ....++..-..-+.|...-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~Aka--lNC~----~~-~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKA--LNCE----NG-PTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHH--hcCC----CC-CCCCcchhhhhhHhhhcCC
Confidence 567999999999999998875 3456677899999999999988662 1110 00 1111111111112222210
Q ss_pred hhhh-c-cc-CC---CCHHHHHHhHh-----------------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcc
Q 044931 252 NDEM-L-VE-AS---SPEEELASSLA-----------------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIP 308 (889)
Q Consensus 252 ~~~~-~-~~-~~---~~~~~l~~~l~-----------------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~ 308 (889)
..+. . +. .. .+..++.+... ......|..+..-+-.- ...-+.|..|.+.+-+.
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP---P~hV~FIlATTe~~Kip 163 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP---PSHVKFILATTEPQKIP 163 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC---ccCeEEEEecCCcCcCc
Confidence 0000 0 00 11 22233444333 33345677777666543 34455555555544365
Q ss_pred cccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc
Q 044931 309 LEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP 368 (889)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 368 (889)
...-.....|.++.++.++-...+...+. .... .-..+....|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~-~E~I--------~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILD-KEGI--------NIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHH-hcCC--------ccCHHHHHHHHHHcCCCh
Confidence 54444448899999999998888888776 3332 222344455666666543
No 246
>PRK00625 shikimate kinase; Provisional
Probab=94.44 E-value=0.028 Score=54.45 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|.|+||+|+||||+|+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 247
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.26 Score=53.53 Aligned_cols=138 Identities=14% Similarity=0.189 Sum_probs=77.8
Q ss_pred cccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-------------------cCCceEEEE
Q 044931 173 NLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-------------------HFAKRAWVR 233 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~ 233 (889)
.++|-+....++..+...... ....+-++|.+|+||||+|..+.+...-.. ..+.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 467778888888888886543 344699999999999999999887321000 123455565
Q ss_pred eCCccc---HHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hhh-----HHhHHHHHhhhccCCCCCCCcEEEEEcCCC
Q 044931 234 VRSEAK---VRDVLIDILQQINDEMLVEASSPEEELASSLA-TLT-----QQVWQVLRNSLYYSSSKSRDGKIILTTSDE 304 (889)
Q Consensus 234 v~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~~-----~~~~~~l~~~l~~~~~~~~gs~iivTTR~~ 304 (889)
.+.... ..+..+++.+......... ..++. +.+ .+.-..+...+... ...+++|++|...
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~~~--------~~kviiidead~mt~~A~nallk~lEep---~~~~~~il~~n~~ 149 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPLEG--------GYKVVIIDEADKLTEDAANALLKTLEEP---PKNTRFILITNDP 149 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCCCC--------CceEEEeCcHHHHhHHHHHHHHHHhccC---CCCeEEEEEcCCh
Confidence 555544 3445555555443332100 00000 111 13334444444444 5678888888855
Q ss_pred CCcccccccCCCeeeccC
Q 044931 305 NNIPLEAKAAGSTLHVRR 322 (889)
Q Consensus 305 ~~v~~~~~~~~~~~~l~~ 322 (889)
..+..........+++.+
T Consensus 150 ~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 150 SKILPTIRSRCQRIRFKP 167 (325)
T ss_pred hhccchhhhcceeeecCC
Confidence 434443333335666666
No 248
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.40 E-value=0.034 Score=54.97 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..+|+|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 249
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.39 E-value=0.056 Score=52.76 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=25.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
..-+.|+|..|+|||.||.++.+. ...+=-.+.|+++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec
Confidence 356999999999999999999984 3222224666643
No 250
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.36 E-value=0.11 Score=53.25 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=35.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccC------CceEEEEeCCcccHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF------AKRAWVRVRSEAKVRDV 243 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~~ 243 (889)
.-.++.|+|.+|+|||+||..+... ....- ..++|++....++...+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHH
Confidence 5679999999999999999998763 22222 46789988777665443
No 251
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.031 Score=54.45 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999999984
No 252
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.30 E-value=0.021 Score=51.22 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhccccccccCC
Q 044931 199 IAIVGEAGSGKTTLTRSVYDRVDVKRHFA 227 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 227 (889)
|-|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 5555564
No 253
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.27 E-value=0.054 Score=53.10 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=46.5
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV 240 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 240 (889)
-.++||-++-++.+.-.-.++ +.+-+.|.|++|+||||-+..+++..--..+=+.++=.++|+.-.+
T Consensus 26 l~dIVGNe~tv~rl~via~~g---nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEG---NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcC---CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 467999999998887666555 5677899999999999987777763111112245555666665443
No 254
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.046 Score=54.06 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+|||-|.+|+||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 568999999999999999999998
No 255
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.23 E-value=0.53 Score=53.55 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=34.6
Q ss_pred ccccchhhhHHHHHHHHhc---c----CCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIR---E----HNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~---~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.++-|.+..++.+.+.... . +-...+-|.++|.+|.|||.+|+.+.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 5678888777766653211 0 1124567899999999999999999983
No 256
>PRK06526 transposase; Provisional
Probab=94.22 E-value=0.1 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-+.|+|.+|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45899999999999999999874
No 257
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.20 E-value=0.091 Score=55.04 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=35.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.-+++.|+|.+|+|||++|.++.. +.......++||+....
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 568999999999999999999888 55566888999988764
No 258
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.20 E-value=0.065 Score=57.09 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=34.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHH
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLID 246 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 246 (889)
.+++...|.|||||||+|.+..- ........++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988554 33333345777777666555554443
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.18 E-value=0.22 Score=54.06 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=27.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVR 235 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 235 (889)
..++|+|+|.+|+||||++..++.. ....=..+..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC
Confidence 4589999999999999999999873 32221234455543
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.17 E-value=0.54 Score=57.15 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=37.6
Q ss_pred ccccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 170 QEINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.++.|.+..++.|.+.+... +-...+-|.++|.+|.|||++|+++++.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3356889998888887776421 1123456889999999999999999983
No 261
>PRK05439 pantothenate kinase; Provisional
Probab=94.12 E-value=0.071 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.8
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 194 HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 194 ~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.+-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999877
No 262
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.047 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.++|.|+|.+|+||||+.+.+-.
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHH
Confidence 358999999999999999988877
No 263
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.07 E-value=0.042 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
....|.|+|++|+||||+|+.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999998
No 264
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.06 E-value=0.29 Score=60.32 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=39.1
Q ss_pred ccccchhhhHHHHHHHHhccC------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREH------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.+..++.+...+.... .....++.++|..|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999997632 11246788999999999999999987
No 265
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.99 E-value=0.21 Score=61.19 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=38.5
Q ss_pred ccccchhhhHHHHHHHHhcc------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIRE------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|-++.++.|.+.+... ......++.++|..|+|||.||+.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998642 112455889999999999999998876
No 266
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.99 E-value=0.091 Score=48.16 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=46.8
Q ss_pred ccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 541 EWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 541 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
.+.++++|+.+.+...-.. +....| . .++.|+.+.+.++ +..++...|.++..|+++.+.. .+
T Consensus 7 ~F~~~~~l~~i~~~~~~~~-------------I~~~~F-~-~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~ 69 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTIKK-------------IGENAF-S-NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL 69 (129)
T ss_dssp TTTT-TT--EEEETST--E-------------E-TTTT-T-T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT
T ss_pred HHhCCCCCCEEEECCCeeE-------------eChhhc-c-ccccccccccccc-ccccceeeeecccccccccccc-cc
Confidence 3556666776666532110 333444 4 6666777777664 5555555666666677777754 44
Q ss_pred cccc-cccCCCCCCcEEeecCCCcccCch-hhhhcccccccccc
Q 044931 621 DSLP-KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLN 662 (889)
Q Consensus 621 ~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~ 662 (889)
..++ ..+..+++|+.+++..+ +..++. .+.+. +|+.+.+.
T Consensus 70 ~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 70 KSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4444 34455677777777543 444443 23344 55555554
No 267
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.99 E-value=0.14 Score=60.20 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=53.4
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-cCCceEEEEeCCcccHHHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-HFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
-++++|.++.++.+...+.... .+.++|++|+||||+|+.+.+ .+.. .|...+++.-+. .+..+++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~-----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~-~~~~~~~~~v~~ 88 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR-----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPE-DPNMPRIVEVPA 88 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC-----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCC-CCchHHHHHHHH
Confidence 4678999999988888777542 456999999999999999998 4433 333344333322 245566777777
Q ss_pred Hhhhhh
Q 044931 250 QINDEM 255 (889)
Q Consensus 250 ~l~~~~ 255 (889)
+++...
T Consensus 89 ~~g~~~ 94 (608)
T TIGR00764 89 GEGREI 94 (608)
T ss_pred hhchHH
Confidence 766543
No 268
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.97 E-value=0.048 Score=53.34 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 269
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.94 E-value=0.58 Score=49.94 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=37.4
Q ss_pred chhhhHHHHHHHHhccCC-CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 176 GLEEQINNLVSLLIREHN-HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
+|........+++..-.. ...+-+-|+|..|+|||.||.++++. ....--.+.++++
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~ 192 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF 192 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH
Confidence 555555556666654221 13456899999999999999999994 3332234566655
No 270
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.93 E-value=0.038 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 271
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.92 E-value=0.074 Score=52.60 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcccccccc-CCceEEEEeCCcccH
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRH-FAKRAWVRVRSEAKV 240 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v~~~~~~ 240 (889)
.|+|+|-||+||||+|..+... -..++ |+ ++=|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCCh
Confidence 6899999999999999885542 22222 33 444566555544
No 272
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.92 E-value=0.039 Score=30.53 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=6.7
Q ss_pred CCcEEeecCCCcccCc
Q 044931 632 RLETLDVKHTKLRFLP 647 (889)
Q Consensus 632 ~L~~L~L~~~~l~~lp 647 (889)
+|++|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 273
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.90 E-value=0.098 Score=61.24 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=58.8
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
-++++|.++.++.|...+... +.+.|+|.+|.||||+|+.+.+.. -...|+..+|..-+ ..+...+++.+..+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~-----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~~~ 102 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR-----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVPAG 102 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHHHh
Confidence 367999999999888877654 368899999999999999998731 23346778887663 34677788888877
Q ss_pred hhhhh
Q 044931 251 INDEM 255 (889)
Q Consensus 251 l~~~~ 255 (889)
++...
T Consensus 103 ~G~~~ 107 (637)
T PRK13765 103 KGKQI 107 (637)
T ss_pred cCHHH
Confidence 66554
No 274
>PRK10536 hypothetical protein; Provisional
Probab=93.89 E-value=0.096 Score=53.42 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=40.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRA 230 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 230 (889)
..+.+|......+..+|... .+|.+.|.+|.|||+||.++..+.-..+.|+.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~-----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK-----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC-----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 45778999999999988653 4899999999999999999887422234454433
No 275
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.045 Score=51.47 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 044931 198 VIAIVGEAGSGKTTLTRSVY 217 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~ 217 (889)
.|+|.|.+|+||||+|+.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 276
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=1.1 Score=48.44 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHH
Q 044931 275 QQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELV 354 (889)
Q Consensus 275 ~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~ 354 (889)
...+..+...+-.- .+++.+|++|.+.+.+..........+.+.+++.++..+.+..... +.
T Consensus 146 ~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~-------------~~-- 207 (342)
T PRK06964 146 VAAANALLKTLEEP---PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV-------------AD-- 207 (342)
T ss_pred HHHHHHHHHHhcCC---CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-------------Ch--
Confidence 35677777777655 5677666666664425444333337899999999999988876421 11
Q ss_pred HHHHHHHHHhCCCchHHHHHh
Q 044931 355 TFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 355 ~~~~~I~~~c~GlPLai~~~g 375 (889)
...++..++|.|+.+..+.
T Consensus 208 --~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 208 --ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --HHHHHHHcCCCHHHHHHHH
Confidence 1235777899997554443
No 277
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=0.016 Score=55.76 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=46.7
Q ss_pred CccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCC-cceeCCCCCCcccEEEccccCCCcce-ecccCccccccee
Q 044931 768 NLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGE-ETTCSSGGFPQLRVLKLWNLFSLEEW-TVEKGAMPRLREL 845 (889)
Q Consensus 768 ~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L 845 (889)
.++.++-+++.+..+.+.-+..+++++.|.+.+|...++ .+..-.+.+|+|+.|+|++|+.+++- -..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777777666677777777777777765544331 12122234556666666666555432 1234455666666
Q ss_pred eccc
Q 044931 846 EIRS 849 (889)
Q Consensus 846 ~l~~ 849 (889)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6655
No 278
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.82 E-value=0.036 Score=49.01 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~ 219 (889)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998773
No 279
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.82 E-value=0.12 Score=56.12 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=49.9
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 247 (889)
...++|.++.+..+...+..+. .+-+.|.+|+|||+||+.+.. ... -..++|.........+++...
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~-----~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGG-----HVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCC-----CEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCch
Confidence 3459999999998888888764 489999999999999999998 333 234566666666666655443
No 280
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.81 E-value=0.055 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+|.|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999983
No 281
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.80 E-value=0.11 Score=46.64 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=35.8
Q ss_pred cccccchhhhHHHHHHHH----hccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLL----IREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L----~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...++|-+-..+.|++.+ .......+-|++.+|..|+|||.+|+.+++.
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 367888666655555555 4444457889999999999999988777663
No 282
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.80 E-value=0.041 Score=55.02 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 283
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.77 E-value=0.04 Score=55.90 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 284
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.76 E-value=0.042 Score=54.14 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 285
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.75 E-value=0.085 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+|||.|..|+||||+|+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999987755
No 286
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.72 E-value=0.044 Score=51.11 Aligned_cols=44 Identities=32% Similarity=0.439 Sum_probs=34.0
Q ss_pred cchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 175 VGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
||....++++.+.+..-.. ...-|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~-~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-SSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-SSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 6888888888888876543 4466899999999999999999884
No 287
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.71 E-value=0.1 Score=51.34 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=32.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|-+..+..+.-..... .-|.|+|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~-----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG-----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC-------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC-----CCeEEECCCCCCHHHHHHHHHH
Confidence 57899988888887776654 4599999999999999999854
No 288
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.71 E-value=0.051 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+++|+|+.|+||||||+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 289
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.70 E-value=0.051 Score=54.55 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=22.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 220 (889)
.+.+|.++||+|+||||..+.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 56788999999999999999998853
No 290
>PRK09183 transposase/IS protein; Provisional
Probab=93.67 E-value=0.2 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+.|+|.+|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46889999999999999999873
No 291
>PRK06217 hypothetical protein; Validated
Probab=93.65 E-value=0.048 Score=53.68 Aligned_cols=22 Identities=45% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 292
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.65 E-value=0.1 Score=48.75 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=28.9
Q ss_pred EEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHH
Q 044931 199 IAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLI 245 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 245 (889)
|.|+|.+|+|||+||+.++. .... ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEecccccccccee
Confidence 67999999999999999998 3311 233356666666665543
No 293
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.64 E-value=0.067 Score=51.28 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=29.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
++.|+|.+|+||||+|..+.. .....-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 478999999999999999988 333333457788776553
No 294
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.62 E-value=0.0028 Score=61.74 Aligned_cols=81 Identities=22% Similarity=0.138 Sum_probs=44.0
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.++..++||++.|++..+-. .|..++.|..|+++.|.+..+|..++.+..+..+++..|+++.+|.+.++++.++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 44455555555555544444 45555555555555555555555555555555555555555555555555555555555
Q ss_pred cc
Q 044931 662 NW 663 (889)
Q Consensus 662 ~~ 663 (889)
.+
T Consensus 119 k~ 120 (326)
T KOG0473|consen 119 KK 120 (326)
T ss_pred cc
Confidence 44
No 295
>PRK13947 shikimate kinase; Provisional
Probab=93.57 E-value=0.05 Score=52.87 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999988
No 296
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.54 E-value=0.32 Score=51.40 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=28.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
..++|+|+|.+|+||||++..+......+..-..+..|+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 457999999999999999999877322221112455666543
No 297
>PRK13949 shikimate kinase; Provisional
Probab=93.54 E-value=0.054 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 298
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.49 E-value=0.051 Score=51.19 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 299
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.12 Score=54.41 Aligned_cols=191 Identities=16% Similarity=0.188 Sum_probs=95.5
Q ss_pred ccccchhhhHHHHHHHHhccC---C-------CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCccc--
Q 044931 172 INLVGLEEQINNLVSLLIREH---N-------HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAK-- 239 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-- 239 (889)
.++=|-++.+++|.+...-+= . ..++=|.+||.+|.|||-||++|+| +....| +.|..+-=
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgSElVq 223 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGSELVQ 223 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccHHHHH
Confidence 456678999988888764321 1 4567799999999999999999999 444433 44433211
Q ss_pred -----HHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhh-----hHH---hHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 240 -----VRDVLIDILQQINDEMLVEASSPEEELASSLATL-----TQQ---VWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 240 -----~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~-----~~~---~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
-..+.+++.+-.....+.---.++-+-+...+.. +.+ ..-++..-+....+ ...-|||.-|-..+
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATNR~D- 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-RGNVKVIMATNRPD- 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-CCCeEEEEecCCcc-
Confidence 1123333333222211100000000000000100 111 12233333333211 23568999887766
Q ss_pred ccccc--cc--CCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCc----hHHHHHhhhh
Q 044931 307 IPLEA--KA--AGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLP----IRIVLLGGLL 378 (889)
Q Consensus 307 v~~~~--~~--~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP----Lai~~~g~~L 378 (889)
+.... .+ -+..+++..=+.+--.++|+-|+. .=.. .++-+++ .+++.|.|.- -|+.+=|+++
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l-----~~dvd~e----~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNL-----ADDVDLE----LLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-hccC-----ccCcCHH----HHHHhcCCCchHHHHHHHHHHhHH
Confidence 43322 11 226788885555555677777764 2111 1112333 4555555553 4555556665
Q ss_pred hcc
Q 044931 379 SAT 381 (889)
Q Consensus 379 ~~~ 381 (889)
.-+
T Consensus 372 AiR 374 (406)
T COG1222 372 AIR 374 (406)
T ss_pred HHH
Confidence 543
No 300
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.38 E-value=0.056 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.785 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+|.|+|.+|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 301
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.36 E-value=0.15 Score=53.23 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=23.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..+|.|.|.+|+|||||...+.+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999998
No 302
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.29 E-value=0.096 Score=52.24 Aligned_cols=24 Identities=46% Similarity=0.749 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|.||||||+.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999987
No 303
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.29 E-value=0.074 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999988
No 304
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.28 E-value=0.1 Score=54.73 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=28.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVR 235 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 235 (889)
..++|+++|.+|+||||++..++. .....-..+++++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC
Confidence 568999999999999999988876 333332345566554
No 305
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.24 E-value=0.066 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|.+.|.+|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 306
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.21 E-value=0.21 Score=52.30 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=34.3
Q ss_pred hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHH
Q 044931 180 QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVL 244 (889)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 244 (889)
-++++..++..+ +-|.|.|.+|+|||+||+.+.+ .... ..++++.....+..+++
T Consensus 10 l~~~~l~~l~~g-----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG-----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC-----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 344555555543 3467999999999999999987 3221 23455555554444443
No 307
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.19 E-value=0.084 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999873
No 308
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.19 E-value=0.23 Score=53.60 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=40.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccccc----CCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH----FAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.-.++-|+|.+|+||||+|.+++-....... =..++||+....|+..++. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 5689999999999999999998764322111 1268999998888877644 444443
No 309
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.15 E-value=0.074 Score=52.20 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|+|+|..|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999998
No 310
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.12 E-value=0.065 Score=56.71 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=27.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCccc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAK 239 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 239 (889)
+.|+|+|-||+||||+|..+..... +..+ .++-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La-~~G~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA-EMGK-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH-HCCC-eEEEEeCCCCCC
Confidence 4799999999999999888876322 2222 344455544443
No 311
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.09 E-value=0.23 Score=53.70 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=40.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccC----CceEEEEeCCcccHHHHHHHHHHHh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF----AKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.-.++-|+|.+|+|||++|.+++-.......+ ..++||+....|++.++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 56799999999999999999987632221111 3689999998888766543 34443
No 312
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.05 E-value=0.11 Score=52.83 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=30.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
-.++|+|..|.|||||++.+.. .....|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3688999999999999999988 57778987777744
No 313
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.99 E-value=0.086 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+|.|.|.+|+||||+|+.+...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999983
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.96 E-value=0.27 Score=50.59 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=34.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLID 246 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 246 (889)
.-.++.|.|.+|+|||++|.++... .. ..-..++||+... ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 5689999999999999999986552 12 3345788998765 34444444
No 315
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.95 E-value=4.1 Score=41.27 Aligned_cols=172 Identities=20% Similarity=0.170 Sum_probs=87.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe-CCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh--
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV-RSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-- 271 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-- 271 (889)
+-+++.|+|.-|.|||+++++.... ..+ |.++=|.+ .+..+...+...|+..+..+.........++....+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 4579999999999999999954431 111 11222333 2345666777777777766222101111112222221
Q ss_pred -----------hhhH-----HhHHHHHhhhccCCCCCCCcEEEEEcCCCC------CcccccccCCCe-eeccCCChhhH
Q 044931 272 -----------TLTQ-----QVWQVLRNSLYYSSSKSRDGKIILTTSDEN------NIPLEAKAAGST-LHVRRLNEEES 328 (889)
Q Consensus 272 -----------v~~~-----~~~~~l~~~l~~~~~~~~gs~iivTTR~~~------~v~~~~~~~~~~-~~l~~L~~~es 328 (889)
|.+. +..+.++-...........-+|+..-.-+- -+.........+ |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 2222 233333332221100011112333322110 001111111133 89999999999
Q ss_pred HHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 044931 329 WKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGG 376 (889)
Q Consensus 329 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~ 376 (889)
..++..+.. +.... .. --..+....|.....|.|.+|..++.
T Consensus 206 ~~yl~~~Le-~a~~~--~~---l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLE-GAGLP--EP---LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHh-ccCCC--cc---cCChhHHHHHHHHhccchHHHHHHHH
Confidence 888888775 33211 11 11234567888999999999987763
No 316
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.075 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 317
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=1.3 Score=52.00 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=94.3
Q ss_pred ccccchhhhH---HHHHHHHhccCC------CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH--
Q 044931 172 INLVGLEEQI---NNLVSLLIREHN------HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV-- 240 (889)
Q Consensus 172 ~~~vGr~~~~---~~l~~~L~~~~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~-- 240 (889)
.++.|-|+.+ .++++.|.++.. .-++=+-++|.+|.|||-||++++-...+ =|++++..-=+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGSEFvE~ 383 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGSEFVEM 383 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechHHHHHH
Confidence 5678877655 556666665432 34667899999999999999999984322 22333222000
Q ss_pred -----HHHHHHHHHHhhhhhccc-CCCCHHHHHHhH----h-h---hhHHhHHHHHhhhccCCCCCCCcEE--EEEcCCC
Q 044931 241 -----RDVLIDILQQINDEMLVE-ASSPEEELASSL----A-T---LTQQVWQVLRNSLYYSSSKSRDGKI--ILTTSDE 304 (889)
Q Consensus 241 -----~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l----~-v---~~~~~~~~l~~~l~~~~~~~~gs~i--ivTTR~~ 304 (889)
..-.+++........+.- .....+.+...- . . -......++..-+... ..++.| +-+|...
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf---~~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF---ETSKGVIVLAATNRP 460 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC---cCCCcEEEEeccCCc
Confidence 111223333222221100 000001110000 0 1 1123445555444443 333323 3356665
Q ss_pred CCccccc----ccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 305 NNIPLEA----KAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 305 ~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
+ +.... +-.+..+.++.=+.....++|..|+- .-.. + .+..++++ |+...-|.+=|.
T Consensus 461 d-~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~-~~~~------~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 461 D-ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLR-KKKL------D-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred c-ccCHHhcCCCccccceeccCCchhhhHHHHHHHhh-ccCC------C-cchhhHHH-HHhcCCCCcHHH
Confidence 5 43322 11227788888899999999999986 3221 1 35556666 888888877543
No 318
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.87 E-value=0.12 Score=58.72 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=25.8
Q ss_pred HHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 186 SLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 186 ~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.|..... ++.+|+|.|..|+||||||+.+..
T Consensus 56 qlL~~~~~-~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 56 QLLAQKND-GIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHhcCC-CeEEEEEECCCCCcHHHHHHHHHh
Confidence 33443333 678999999999999999999987
No 319
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.86 E-value=0.55 Score=49.64 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=37.0
Q ss_pred cchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccc-cccccCCceE
Q 044931 175 VGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV-DVKRHFAKRA 230 (889)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~ 230 (889)
-+|..+..--.++|+.+ .+..|.+.|.+|.|||-||.+..=.. ..++.|..++
T Consensus 227 ~prn~eQ~~ALdlLld~---dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 227 RPRNAEQRVALDLLLDD---DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred CcccHHHHHHHHHhcCC---CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 34777777777888876 67999999999999999886643221 2244555433
No 320
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.86 E-value=0.13 Score=54.87 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=27.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
+++.+.|-|||||||+|.+..-. ....=..++-++.....+..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~ 44 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLS 44 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHH
Confidence 68999999999999999776652 21211234555554443433
No 321
>PRK13948 shikimate kinase; Provisional
Probab=92.85 E-value=0.091 Score=51.32 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+.|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 322
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.85 E-value=0.82 Score=47.86 Aligned_cols=84 Identities=27% Similarity=0.381 Sum_probs=55.6
Q ss_pred ccccccchhhhHHHHHHHHhccCC-CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH-HHHHHHH
Q 044931 170 QEINLVGLEEQINNLVSLLIREHN-HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV-RDVLIDI 247 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~~~~i 247 (889)
+...++|-.++..++-+++...-- +.-.-|.|+|..|.|||+|.-.+..| .+..=+..+-|........ +-.++.|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 456799999999999988875311 23456889999999999998888775 2222233444555554433 2356677
Q ss_pred HHHhhhhh
Q 044931 248 LQQINDEM 255 (889)
Q Consensus 248 ~~~l~~~~ 255 (889)
.+++..+.
T Consensus 100 ~rql~~e~ 107 (408)
T KOG2228|consen 100 TRQLALEL 107 (408)
T ss_pred HHHHHHHH
Confidence 77765544
No 323
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.84 E-value=0.17 Score=54.01 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=34.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV 240 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 240 (889)
.-+++-|+|.+|+||||||.++... ....-..++||+....++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence 5689999999999999999998763 3333356789988776665
No 324
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.83 E-value=0.22 Score=53.45 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=43.5
Q ss_pred HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc----cCCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 183 NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR----HFAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 183 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.+-++|..+= ..-.++.|+|.+|+||||||..++....... .-..++|++....++..+ +.++++.+
T Consensus 84 ~lD~ll~gGi-~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~ 154 (316)
T TIGR02239 84 ELDKLLGGGI-ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERY 154 (316)
T ss_pred HHHHHhcCCC-CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHc
Confidence 3444444332 2568999999999999999998875322211 113579999888777765 34444444
No 325
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.82 E-value=0.13 Score=50.72 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=29.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.++|.|+|..|+|||||++.+.. .....|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 47899999999999999999998 55566754555443
No 326
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.82 E-value=0.18 Score=55.94 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.++|.+|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 327
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.78 E-value=0.23 Score=51.63 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=40.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccccc---C-CceEEEEeCCcccHHHHHHHHHHHh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH---F-AKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.-.+.=|+|.+|+|||+||..++-...+... . ..++|++-...|+...+. +|+++.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 4579999999999999999887653333222 2 248999999999887764 466543
No 328
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.76 E-value=0.1 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.|+|.+|+|||||++.+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 678999999999999999999976
No 329
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.76 E-value=0.085 Score=49.13 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=26.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcccccc-ccCCceEEEEeCC
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVK-RHFAKRAWVRVRS 236 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~ 236 (889)
++|.|+|..|+|||||++.+.+. .. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEccC
Confidence 48999999999999999999994 43 4455554555544
No 330
>PRK14530 adenylate kinase; Provisional
Probab=92.76 E-value=0.082 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.515 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 331
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.76 E-value=0.081 Score=50.31 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 044931 199 IAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~ 218 (889)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 332
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=92.74 E-value=0.24 Score=49.99 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=38.3
Q ss_pred ccccccccchhhhHHHHHHHHhccCC-CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 168 FEQEINLVGLEEQINNLVSLLIREHN-HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 168 ~~~~~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.-++++|.|..++.|++-...--. ....-+-+||..|.|||+|++++.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 34557899999999887765432110 1345678899999999999999988
No 333
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.72 E-value=0.21 Score=53.33 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=35.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV 240 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 240 (889)
.-+++-|+|.+|+||||||.+++-. ....-..++||+....+++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 5679999999999999999998763 3344457889988777665
No 334
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.72 E-value=0.086 Score=53.30 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999998888776
No 335
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.69 E-value=0.091 Score=48.84 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.|+|+|..|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999983
No 336
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=0.022 Score=54.78 Aligned_cols=83 Identities=19% Similarity=0.361 Sum_probs=58.0
Q ss_pred CeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecc--cCcccccceeecccccCCCCCCCcchhhhhcccceE
Q 044931 794 NILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVE--KGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEF 871 (889)
Q Consensus 794 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L 871 (889)
+.++-++.++..+.+ ..+..+++++.|.+.+|..+..|... -+-.|+|+.|+|++|++++..--..+..++ +|+.|
T Consensus 104 eaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk-nLr~L 181 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK-NLRRL 181 (221)
T ss_pred EEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh-hhHHH
Confidence 334444333333222 24567889999999999988877432 235789999999999999933334567888 99999
Q ss_pred EeccCch
Q 044931 872 VLTNMPS 878 (889)
Q Consensus 872 ~l~~cp~ 878 (889)
.|.+.|.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 9998775
No 337
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.61 E-value=0.1 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.+|+|+|..|+||||||+.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478999999999999999999983
No 338
>PRK13975 thymidylate kinase; Provisional
Probab=92.61 E-value=0.094 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+|+|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999983
No 339
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.59 E-value=0.12 Score=63.06 Aligned_cols=49 Identities=22% Similarity=0.447 Sum_probs=38.7
Q ss_pred cccccchhhhHHHHHHHHhccC---CCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLLIREH---NHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.+++|.++.++.|.+++.... .....++.++|.+|+|||++|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999998775321 113458999999999999999999983
No 340
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.13 Score=60.52 Aligned_cols=44 Identities=30% Similarity=0.543 Sum_probs=34.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.++||++|++++++.|.....++ -..+|.+|||||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN---PvLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN---PVLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC---CeEecCCCCCHHHHHHHHHH
Confidence 568999999999999999865422 24579999999997655554
No 341
>PRK14974 cell division protein FtsY; Provisional
Probab=92.59 E-value=0.36 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++.+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998888876
No 342
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.58 E-value=0.21 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999883
No 343
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.56 E-value=0.1 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+.|.|+|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 356999999999999999999983
No 344
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.54 E-value=0.32 Score=54.35 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+.+|.++|.+|+||||+|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999998873
No 345
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.53 E-value=0.1 Score=47.03 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhccc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~~ 220 (889)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 346
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.50 E-value=0.1 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+|.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999773
No 347
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.48 E-value=0.073 Score=29.42 Aligned_cols=16 Identities=50% Similarity=0.694 Sum_probs=7.0
Q ss_pred CCcEEeCCCCCCcccc
Q 044931 609 NLRYLGLRSTFIDSLP 624 (889)
Q Consensus 609 ~Lr~L~L~~~~i~~lp 624 (889)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666555554
No 348
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.48 E-value=0.093 Score=49.61 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 349
>PRK13946 shikimate kinase; Provisional
Probab=92.46 E-value=0.098 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.|.++|++|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999998
No 350
>PLN02200 adenylate kinase family protein
Probab=92.46 E-value=0.11 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 351
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.41 E-value=0.13 Score=50.82 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
++.|.|.+|+|||+||.++... ....=..++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC
Confidence 3679999999999999998763 222224578887654
No 352
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.34 E-value=0.14 Score=59.30 Aligned_cols=44 Identities=36% Similarity=0.496 Sum_probs=37.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~---~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP---NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999887554 335678999999999999999986
No 353
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.33 E-value=0.16 Score=51.47 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=36.5
Q ss_pred hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe--CCcccHHHHHHH
Q 044931 180 QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV--RSEAKVRDVLID 246 (889)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~ 246 (889)
+..++.+.+..... +..+|+|.|.||+||+||.-.+... .+..=..+.-+.| |.+++--.++-+
T Consensus 14 ~~~~ll~~l~~~~g-~a~~iGiTG~PGaGKSTli~~l~~~--~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHTG-RAHVIGITGPPGAGKSTLIDALIRE--LRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGTT--SEEEEEEE-TTSSHHHHHHHHHHH--HHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhcC-CceEEEeeCCCCCcHHHHHHHHHHH--HhhcCCceEEEEECCCCCCCCCccccc
Confidence 45566666666544 6789999999999999999888773 3332112333333 445554444443
No 354
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.29 E-value=0.28 Score=52.66 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+|+++|.+|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999998873
No 355
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.28 E-value=0.12 Score=54.69 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=26.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
++|+|+|-|||||||+|..+..-.. +..+ .++-|+....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La-~~G~-rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALA-ESGK-KVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-hCCC-EEEEEeeCCc
Confidence 5789999999999999888776321 1111 3455555444
No 356
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.26 E-value=0.25 Score=53.46 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=44.7
Q ss_pred HHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc----cCCceEEEEeCCcccHHHHHHHHHHHhh
Q 044931 184 LVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR----HFAKRAWVRVRSEAKVRDVLIDILQQIN 252 (889)
Q Consensus 184 l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 252 (889)
|-++|..+= ..-.++-|+|.+|+|||+||..++-...... .-..++||+....|+++++ .+|++.++
T Consensus 112 LD~lL~GG~-~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 112 LDKILEGGI-ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred HHHhhcCCC-cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 334444332 2567899999999999999988775322211 1126899999998888765 45555543
No 357
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=92.25 E-value=0.23 Score=51.49 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=31.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCC-ceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA-KRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~ 237 (889)
.-+-++|+|-.|+||||||+.+++ .++.+|+ .++++-+.+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer 109 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGER 109 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccC
Confidence 346799999999999999999999 5665664 4555666554
No 358
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.23 E-value=0.23 Score=52.17 Aligned_cols=49 Identities=31% Similarity=0.401 Sum_probs=39.1
Q ss_pred ccccccchhhhHH---HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 170 QEINLVGLEEQIN---NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 170 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
....+||-.+..+ -|+++..+..- .-+.|.|+|.+|.|||+||..+.+.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~-aGrgiLi~GppgTGKTAlA~gIa~e 88 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKM-AGRGILIVGPPGTGKTALAMGIARE 88 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcc-cccEEEEECCCCCcHHHHHHHHHHH
Confidence 3478999777665 36777776644 5689999999999999999999984
No 359
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.23 E-value=0.13 Score=44.94 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVY 217 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~ 217 (889)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 360
>PRK13768 GTPase; Provisional
Probab=92.22 E-value=0.17 Score=52.58 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++.|.|.||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 36899999999999999988876
No 361
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.22 E-value=0.11 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999999888766
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.18 E-value=0.16 Score=52.17 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHH
Q 044931 182 NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 182 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
.+++..+..... +..+|+|.|.||+||+||.-.+......+.+=-.++=|+-|++++--.++-+=++.
T Consensus 38 ~~ll~~l~p~tG-~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM 105 (323)
T COG1703 38 RELLRALYPRTG-NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRM 105 (323)
T ss_pred HHHHHHHhhcCC-CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhH
Confidence 456666665544 77899999999999999998887743333332234445556666666666554444
No 363
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.15 E-value=0.28 Score=52.98 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=41.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccc---cc-CCceEEEEeCCcccHHHHHHHHHHHhh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVK---RH-FAKRAWVRVRSEAKVRDVLIDILQQIN 252 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~-F~~~~wv~v~~~~~~~~~~~~i~~~l~ 252 (889)
.-.++-|+|.+|+|||+|+..++-..... .. -..++||+....|++.++.+ +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 55788899999999999998876432221 11 24689999999888877544 455543
No 364
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.11 E-value=0.28 Score=52.44 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc----cCCceEEEEeCCcccHHHHHHHHHHHhh
Q 044931 184 LVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR----HFAKRAWVRVRSEAKVRDVLIDILQQIN 252 (889)
Q Consensus 184 l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 252 (889)
|-++|..+= ..-+++-|+|.+|+|||+||..++-...... .=..++||+....|+++++. +++++++
T Consensus 85 LD~lLgGGi-~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 85 LDGILGGGI-ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred HHHHhCCCC-cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 334444322 2557999999999999999988664222221 11368999999888887764 3555553
No 365
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.11 E-value=0.2 Score=54.04 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=36.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+||-++.+..+.-.+..+ ...-|.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~---~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP---KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC---CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 56899999998887777764 335577999999999999999964
No 366
>PRK14527 adenylate kinase; Provisional
Probab=92.09 E-value=0.13 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.|+|.+|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 367
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.08 E-value=0.12 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999988766
No 368
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.07 E-value=0.82 Score=56.25 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=37.8
Q ss_pred ccccchhhhHHHHHHHHhccC------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREH------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|-++.++.|...+.... .....++.++|..|+|||+||+.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 678999999999998886421 11345677899999999999999887
No 369
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.06 E-value=0.17 Score=53.43 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=29.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
++|+|.|-||+||||+|..+..-... ..+ .++-|+.....+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~-~G~-kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE-MGK-KVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh-CCC-eEEEEEcCCCCCch
Confidence 57888999999999999888773221 111 45666666554443
No 370
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.05 E-value=0.11 Score=49.96 Aligned_cols=21 Identities=48% Similarity=0.695 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~ 219 (889)
|.|.|.+|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 371
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.04 E-value=0.096 Score=50.41 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 044931 199 IAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~ 218 (889)
|.|+|.+|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988
No 372
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.02 E-value=0.18 Score=54.37 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=35.7
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-..++|.++.++.+.-.+... +..-+.+.|.+|.||||+|+.+..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~---~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP---GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc---CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999887655433 234599999999999999999855
No 373
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.97 E-value=0.12 Score=47.22 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=25.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.=|.|.|.+|+||||||..+... . ..-|+++++-
T Consensus 8 PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~ 41 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDL 41 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhH
Confidence 44889999999999999999862 1 2346766653
No 374
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.96 E-value=0.12 Score=44.44 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++.+.|.+|+||||+|..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 375
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.93 E-value=0.35 Score=50.31 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=39.1
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHH
Q 044931 194 HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDV 243 (889)
Q Consensus 194 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 243 (889)
+.-+++=|+|..|.||||+|.+++- ..+..-..++|++....+++..+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~ 105 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERA 105 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHH
Confidence 3668999999999999999999876 34444458999999998888653
No 376
>PRK13695 putative NTPase; Provisional
Probab=91.88 E-value=0.14 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 377
>PRK09354 recA recombinase A; Provisional
Probab=91.87 E-value=0.26 Score=53.05 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=39.4
Q ss_pred HHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH
Q 044931 184 LVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV 240 (889)
Q Consensus 184 l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 240 (889)
|-.+|..++-+.-+++-|+|.+|+||||||.++... ....-..++||+....++.
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH
Confidence 334444133235689999999999999999998763 3344457889988887775
No 378
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.27 Score=48.74 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=35.7
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.++=|.+-.+++|.+...-. +-+.++=|..+|.+|.|||.||++|.|+
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45667777777776665321 0146778999999999999999999994
No 379
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.85 E-value=0.8 Score=44.17 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=28.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV 240 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 240 (889)
++.|.|..|+|||++|.++... ....++++.-.+.++.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~ 38 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD 38 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH
Confidence 3679999999999999998762 2245777776666654
No 380
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.85 E-value=0.12 Score=49.16 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
||+|+|..|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999983
No 381
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.84 E-value=0.39 Score=49.33 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=31.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.-.++.|+|.+|+|||+||.++... ..+ +=..++|++..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~ 64 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT 64 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC
Confidence 5689999999999999999998652 222 2346889988654
No 382
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.83 E-value=0.56 Score=52.55 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=27.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
.++++++|.+|+||||++..+.........-..+..|+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 46999999999999998888766322012223466676543
No 383
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.82 E-value=0.34 Score=44.28 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=59.3
Q ss_pred eeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHH
Q 044931 524 VRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDV 603 (889)
Q Consensus 524 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~ 603 (889)
+..+.+. +.........+..+++|+.+.+.++ ... +....| . .++.|+.+.+.+ .+..++...
T Consensus 14 l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~-~~~------------i~~~~F-~-~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 14 LESITFP-NTIKKIGENAFSNCTSLKSINFPNN-LTS------------IGDNAF-S-NCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp --EEEET-ST--EE-TTTTTT-TT-SEEEESST-TSC------------E-TTTT-T-T-TT-EEEEETS-TT-EE-TTT
T ss_pred CCEEEEC-CCeeEeChhhccccccccccccccc-ccc------------cceeee-e-cccccccccccc-ccccccccc
Confidence 3444444 3333334556788889999999875 321 334556 5 787899999976 555566657
Q ss_pred hccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCch-hhhhcccc
Q 044931 604 IGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKL 656 (889)
Q Consensus 604 i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L 656 (889)
|..+.+|+.+.+..+ +..++ ..+.+. +|+.+.+.. .+..++. .+.++++|
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 888999999999765 66665 456666 899998875 5555554 35556555
No 384
>PRK06761 hypothetical protein; Provisional
Probab=91.79 E-value=0.22 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
++|.|.|.+|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999984
No 385
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=91.79 E-value=0.17 Score=53.87 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=27.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
++|+|+|-||+||||+|..+..- ....=..++-|......
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~--La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHM--MAEMGKRVLQLGCDPKH 40 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEecCCC
Confidence 58999999999999999888773 32222235556554443
No 386
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.76 E-value=0.43 Score=50.98 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=36.8
Q ss_pred cccccchhhhHH---HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc
Q 044931 171 EINLVGLEEQIN---NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH 225 (889)
Q Consensus 171 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 225 (889)
...+||..+..+ -+++++....- .-+.|.|.|.+|.|||+||..+.+ .....
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~-aGr~iLiaGppGtGKTAlA~~ia~--eLG~~ 77 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKI-AGRAILIAGPPGTGKTALAMAIAK--ELGED 77 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHH--HCTTT
T ss_pred cccccChHHHHHHHHHHHHHHhcccc-cCcEEEEeCCCCCCchHHHHHHHH--HhCCC
Confidence 468999877665 46777776653 458899999999999999999999 44433
No 387
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.76 E-value=0.19 Score=54.27 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=38.2
Q ss_pred ccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 170 QEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+-+.+||-++.+..|...+.+. .+.-|.|.|..|.||||+|+.+++
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p---~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP---KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC---CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3477999999888888877775 445577999999999999999866
No 388
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.76 E-value=0.37 Score=51.73 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 182 NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 182 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+.+.+..... +..+|+|.|.+|+|||||+..+..
T Consensus 43 ~~l~~~~~~~~~-~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPHTG-NALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhcCC-CcEEEEEECCCCCCHHHHHHHHHH
Confidence 455555543322 678999999999999999999877
No 389
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.76 E-value=0.21 Score=53.44 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 182 NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 182 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+.+.+..... ...+|+|.|.+|+|||||+..+...
T Consensus 21 ~~~~~~~~~~~~-~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTG-NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccC-CceEEEEECCCCCCHHHHHHHHHHH
Confidence 344444443333 6789999999999999999998773
No 390
>PF13245 AAA_19: Part of AAA domain
Probab=91.75 E-value=0.39 Score=39.24 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=16.6
Q ss_pred eEEEEECCCCCcHHHHH-HHHhc
Q 044931 197 QVIAIVGEAGSGKTTLT-RSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA-~~v~~ 218 (889)
+++.|.|.+|.|||+++ ..+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999544 44444
No 391
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.75 E-value=0.16 Score=56.54 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=35.4
Q ss_pred ccccchhhhHHHHHHHHhcc------------CC-CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIRE------------HN-HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~------------~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+||.+..++.+...+... +. .....|.++|.+|+|||+||+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56899999998886555221 00 0235689999999999999999987
No 392
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.72 E-value=0.48 Score=51.24 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=29.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
+.++++|+|..|+||||++..+... ....-..+.+|+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDt 244 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDT 244 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCc
Confidence 5689999999999999999998863 322223466776643
No 393
>PRK04182 cytidylate kinase; Provisional
Probab=91.72 E-value=0.14 Score=50.22 Aligned_cols=22 Identities=45% Similarity=0.768 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999983
No 394
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.72 E-value=0.15 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++++|+++|..|+|||||..++.+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999999987
No 395
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.71 E-value=0.17 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.|+|.+|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 568999999999999999999987
No 396
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.70 E-value=0.22 Score=58.28 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=40.6
Q ss_pred cccccchhhhHHHHHHHHhccCC--CCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLLIREHN--HNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-.+++|-++.++++..++..... ...+++.|+|.+|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999876432 23468999999999999999999873
No 397
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=91.69 E-value=0.29 Score=46.74 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=30.3
Q ss_pred chhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccc
Q 044931 176 GLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 220 (889)
|.++-++.+.+.+..........|+++|++|+||+||...+..+.
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 455555666555432211133568899999999999999998753
No 398
>PRK05973 replicative DNA helicase; Provisional
Probab=91.68 E-value=0.37 Score=49.03 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=33.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 247 (889)
.-.++.|.|.+|+|||++|.++... ....=..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 4468999999999999999998663 2222235677766553 44454444
No 399
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.68 E-value=0.21 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-.++.|.|..|+||+||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999995
No 400
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.64 E-value=0.13 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-|+|+|.+|+|||||+..+.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 46899999999999999999886
No 401
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.64 E-value=0.15 Score=52.35 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=17.2
Q ss_pred EECCCCCcHHHHHHHHhccc
Q 044931 201 IVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 201 I~G~gGiGKTtLA~~v~~~~ 220 (889)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998843
No 402
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.62 E-value=0.14 Score=49.59 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 403
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.61 E-value=0.14 Score=48.74 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccC
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHF 226 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 226 (889)
+-|.++||.|+||||+.+++.+ ...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3478999999999999999987 444344
No 404
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.57 E-value=0.24 Score=52.73 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=41.2
Q ss_pred ccccchhhhHHHHHHHHhccCC---CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHN---HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..|+|.++.++++++.+..... ..-+|+-++|..|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999976432 3678999999999999999999887
No 405
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.56 E-value=0.2 Score=52.42 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=27.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
++|+|+|.+|+|||||+..+.. ..+.+. .+.-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC-CEEEEEE
Confidence 5899999999999999999998 444443 4555544
No 406
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.56 E-value=0.19 Score=54.41 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=38.7
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~-~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP-LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999988876543 345688999999999999999986
No 407
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.53 E-value=0.36 Score=48.01 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999884
No 408
>PTZ00035 Rad51 protein; Provisional
Probab=91.50 E-value=0.51 Score=51.16 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc---c-cCCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 184 LVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK---R-HFAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 184 l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
+-++|..+= ..-.++.|+|.+|+|||||+..++-..+.. . .=..++||+....++.++ +.++++.+
T Consensus 107 LD~lLgGGi-~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~ 176 (337)
T PTZ00035 107 LDKLLGGGI-ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERF 176 (337)
T ss_pred HHHHhCCCC-CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHh
Confidence 444444322 256899999999999999999887532221 1 123577998887777766 34445544
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=91.50 E-value=0.39 Score=53.63 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998888776
No 410
>PRK04132 replication factor C small subunit; Provisional
Probab=91.49 E-value=0.89 Score=54.90 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=84.7
Q ss_pred CCCCcHHHHHHHHhccccccccCC-ceEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHH
Q 044931 204 EAGSGKTTLTRSVYDRVDVKRHFA-KRAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQ 276 (889)
Q Consensus 204 ~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~ 276 (889)
+-++||||+|.+++++. ..+.++ ..+-+++++...+. .++++++.+...... ... ..++. + .+.+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~-~~~-----~~KVvIIDEaD~Lt~~ 645 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI-GGA-----SFKIIFLDEADALTQD 645 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc-CCC-----CCEEEEEECcccCCHH
Confidence 57899999999999942 122232 35667777654443 344444433221110 000 00111 1 1234
Q ss_pred hHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHH
Q 044931 277 VWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTF 356 (889)
Q Consensus 277 ~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~ 356 (889)
....+...+..- ...+++|.+|.+...+..........+++++++.++-...+...+. ..+. ..+ ++.
T Consensus 646 AQnALLk~lEep---~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~-~Egi----~i~----~e~ 713 (846)
T PRK04132 646 AQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE-NEGL----ELT----EEG 713 (846)
T ss_pred HHHHHHHHhhCC---CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHH-hcCC----CCC----HHH
Confidence 556666666543 3466777766665535444443447899999999999888887664 2221 122 456
Q ss_pred HHHHHHHhCCCchHH
Q 044931 357 KERILKKCGGLPIRI 371 (889)
Q Consensus 357 ~~~I~~~c~GlPLai 371 (889)
...|++.++|-+-.+
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 778999999988443
No 411
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.47 E-value=0.34 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|.+|+||||+|..+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999876
No 412
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.44 E-value=0.31 Score=46.15 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 179 EQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.+++|.++|.. +++.++|..|||||||...+..+
T Consensus 24 ~g~~~l~~~l~~------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC------CEEEEECCCCCCHHHHHHHHHhh
Confidence 345666666653 68999999999999999999985
No 413
>PTZ00494 tuzin-like protein; Provisional
Probab=91.43 E-value=0.59 Score=50.80 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=63.9
Q ss_pred CccccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHH
Q 044931 167 CFEQEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLID 246 (889)
Q Consensus 167 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 246 (889)
......++|.|+.+-..+.+.|...+...++++.+.|.-|.||++|.+.....+.+ ..++|.+...- +-++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrs 437 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRS 437 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHH
Confidence 33456889999999999999998877668999999999999999999988874332 46778887653 45677
Q ss_pred HHHHhhhhh
Q 044931 247 ILQQINDEM 255 (889)
Q Consensus 247 i~~~l~~~~ 255 (889)
|++.++.+.
T Consensus 438 VVKALgV~n 446 (664)
T PTZ00494 438 VVRALGVSN 446 (664)
T ss_pred HHHHhCCCC
Confidence 888887654
No 414
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.41 E-value=0.15 Score=53.99 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 6899999999999999888766
No 415
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.40 E-value=0.22 Score=50.80 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|||..|.||||||+.+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc
Confidence 447899999999999999999987
No 416
>PLN02348 phosphoribulokinase
Probab=91.39 E-value=0.23 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=22.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|.+|+||||+|+.+.+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999988
No 417
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.38 E-value=0.15 Score=53.96 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|+|.|-|||||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999988766
No 418
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.38 E-value=0.42 Score=52.12 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=34.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccC--CceEEEEeCCc-ccHHHHHHHHHHHhhh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF--AKRAWVRVRSE-AKVRDVLIDILQQIND 253 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~-~~~~~~~~~i~~~l~~ 253 (889)
.-.+++++|..|+||||++.++.. +....+ ..+..++.... ....+-++...+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 347999999999999999999987 332233 34555553321 1233334444444443
No 419
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.36 E-value=0.81 Score=49.33 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=35.0
Q ss_pred hHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHH
Q 044931 277 VWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKR 335 (889)
Q Consensus 277 ~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 335 (889)
.-..+...+... ..+..+|+||.+.+.+...+......+.+.+++.+++.+.+...
T Consensus 129 a~naLLk~LEep---~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 129 AANSLLKVLEEP---PPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred HHHHHHHHHHhC---cCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 334444444443 33566777777655355444433378999999999998888653
No 420
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.35 E-value=0.17 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+++|.+|+|||||+..+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 421
>PRK13236 nitrogenase reductase; Reviewed
Probab=91.34 E-value=0.22 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.+||++.|-|||||||+|..+..
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHH
Confidence 679999999999999998877665
No 422
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.34 E-value=0.2 Score=55.36 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=36.2
Q ss_pred cccccchhhhHHHHHHHHhc---------cCC------CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIR---------EHN------HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~---------~~~------~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..+||.++.++.+...+.. ... -....|.++|.+|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 46789999999988766521 010 0135799999999999999999986
No 423
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.33 E-value=0.52 Score=46.83 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=25.1
Q ss_pred HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 182 NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 182 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+..+... +-+++.|.|.+|.||||+++.+..
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHH
Confidence 3444444333 237899999999999999999877
No 424
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.31 E-value=0.15 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.|.|+|+.|+||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999998
No 425
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.28 E-value=0.31 Score=59.91 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=38.3
Q ss_pred ccccchhhhHHHHHHHHhccC------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREH------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.+..++.|...+.... .....++.++|..|+|||+||+.+.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999998887532 11235789999999999999999987
No 426
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.27 E-value=0.28 Score=48.09 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=28.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.-.|++|+|..|+|||||.+.+..= ...=.+.+||.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECC
Confidence 3469999999999999999999873 222246778743
No 427
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.27 E-value=0.14 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 428
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.26 E-value=1.5 Score=43.77 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=67.3
Q ss_pred cccccccchhhhHHHHHHHHhccCC-CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHH
Q 044931 169 EQEINLVGLEEQINNLVSLLIREHN-HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 247 (889)
++-..++|.|...+.+++--..--. -..--|.+||.-|.||+.|++++.+ .+....-. -|.|... ++ .-+-.|
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-dl-~~Lp~l 130 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-DL-ATLPDL 130 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-HH-hhHHHH
Confidence 3446789999888887764432111 1334588999999999999999999 55554433 3444332 11 112333
Q ss_pred HHHhhhhhccc----CCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC
Q 044931 248 LQQINDEMLVE----ASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN 305 (889)
Q Consensus 248 ~~~l~~~~~~~----~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~ 305 (889)
+.++......= +..+- --.++.+..++..+..+....+...++..|.++.
T Consensus 131 ~~~Lr~~~~kFIlFcDDLSF--------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 131 VELLRARPEKFILFCDDLSF--------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHHhcCCceEEEEecCCCC--------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 33333221100 00000 0123567778888877655445555555555443
No 429
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.26 E-value=0.13 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 430
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.26 E-value=0.17 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|+|..|.|||||++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.26 E-value=0.16 Score=47.21 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=25.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
-.+++|+|..|+|||||.+.++.. .. ...+.+++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~--~~-~~~G~i~~ 44 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL--LP-PDSGSILI 44 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS--SH-ESEEEEEE
T ss_pred CCEEEEEccCCCccccceeeeccc--cc-cccccccc
Confidence 368999999999999999999883 22 23455555
No 432
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=0.16 Score=52.52 Aligned_cols=40 Identities=20% Similarity=0.519 Sum_probs=30.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccc--ccCCceEEEEe
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVK--RHFAKRAWVRV 234 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v 234 (889)
--|+|.++|++|.|||+|++++++...++ +.|....-+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 35889999999999999999999976554 44555444544
No 433
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.25 E-value=0.31 Score=50.89 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=30.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
.-.++.|.|.+|+|||++|.++... ....=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 5679999999999999999997552 222234688888764
No 434
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.24 E-value=0.23 Score=50.52 Aligned_cols=37 Identities=35% Similarity=0.332 Sum_probs=26.2
Q ss_pred eEEEEECC-CCCcHHHHHHHHhccccccccCCceEEEEeC
Q 044931 197 QVIAIVGE-AGSGKTTLTRSVYDRVDVKRHFAKRAWVRVR 235 (889)
Q Consensus 197 ~vi~I~G~-gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 235 (889)
++|+|+|. ||+||||++..+..- ....=..++=|..+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~a--L~~~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWA--LARLGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH--HHHCCCcEEEEeCC
Confidence 68999995 999999999998773 33322345555554
No 435
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.24 E-value=0.35 Score=49.57 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=30.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.-.++.|.|.+|+||||||.++... ....-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 4579999999999999999987652 2223346788877543
No 436
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.23 E-value=0.15 Score=55.06 Aligned_cols=56 Identities=30% Similarity=0.375 Sum_probs=33.1
Q ss_pred hHHHHHHHHhccC-CCCceEEEEECCCCCcHHH-HHHHHhccccccccCCceEEEEeCC
Q 044931 180 QINNLVSLLIREH-NHNSQVIAIVGEAGSGKTT-LTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 180 ~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
....+..++...- ...-+||++||..|||||| ||+..+.-.. ...=..+..|+...
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDt 243 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDT 243 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEecc
Confidence 3344444444431 0136899999999999995 7777665221 12223566676543
No 437
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.22 E-value=0.68 Score=52.38 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-++|+|+|.+|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 438
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=91.21 E-value=1 Score=44.72 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|..|+||||+++.+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 589999999999999997754
No 439
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.18 E-value=0.29 Score=56.93 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=35.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..+.|.+..+.|.+....... ...+|.|+|+.|+||||+|+.++.
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~-~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHK-QGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccC-CCeEEEEECCCCChHHHHHHHHHH
Confidence 4556677777755555444433 556899999999999999999998
No 440
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=91.16 E-value=0.29 Score=51.39 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=28.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
++|+|.|-||+||||+|..+... .... ..++-++.....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~--La~~-GrVLliD~Dpq~ 41 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAA--YSND-HRVLVIGCDPKA 41 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcc--cCCC-CEEEEEeEccCc
Confidence 68999999999999999998884 3222 245556665443
No 441
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.15 E-value=0.14 Score=49.29 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=17.2
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 044931 199 IAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~ 218 (889)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999997
No 442
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.12 E-value=0.7 Score=44.40 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=22.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 220 (889)
.-..+-|+|..|.|||||.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34689999999999999999999854
No 443
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.10 E-value=0.27 Score=52.78 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
....|+|+|+.|+||||+++.+..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999999987
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.09 E-value=0.47 Score=48.51 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=31.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 247 (889)
.-.++.|.|.+|.||||||.++... -.+.. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3469999999999999998665552 22222 3466776433 445555554
No 445
>PLN02796 D-glycerate 3-kinase
Probab=91.08 E-value=0.46 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+-+|+|.|..|+||||||+.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 567899999999999999999987
No 446
>PRK04328 hypothetical protein; Provisional
Probab=91.05 E-value=0.48 Score=49.13 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=31.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.-.++.|.|.+|.|||+||.++... ....-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 4579999999999999999987652 2233457889987664
No 447
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.03 E-value=0.6 Score=50.53 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=47.2
Q ss_pred HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc-CCc-eEEEEeCCc-ccHHHHHHHHHHHhhh
Q 044931 181 INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-FAK-RAWVRVRSE-AKVRDVLIDILQQIND 253 (889)
Q Consensus 181 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~-~~wv~v~~~-~~~~~~~~~i~~~l~~ 253 (889)
..++++.+..-. .-..+.|+|.+|+|||||++.+.+ .+... -+. ++|+.+.+. .++.++.+.+...+..
T Consensus 120 ~~RvID~l~PiG--kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 120 SMRVVDLVAPIG--KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hHhhhhheeecC--CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 345777777543 335679999999999999999988 34332 244 467666554 4577777777765544
No 448
>PRK08356 hypothetical protein; Provisional
Probab=91.03 E-value=0.21 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVY 217 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~ 217 (889)
..+|+|.|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999993
No 449
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.99 E-value=0.16 Score=50.40 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 044931 199 IAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~ 218 (889)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 450
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.98 E-value=0.17 Score=51.57 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 451
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.97 E-value=0.38 Score=55.25 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=40.8
Q ss_pred CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhh
Q 044931 194 HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQIN 252 (889)
Q Consensus 194 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 252 (889)
+.-+|.-++|.+|+||||||.-|++. ..| .++=|++|+.-+...+=..|...+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHh
Confidence 45689999999999999999999983 222 3667888888777766666655543
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.94 E-value=0.27 Score=47.83 Aligned_cols=21 Identities=43% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 453
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.92 E-value=0.31 Score=53.56 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++.|+|.+|+||||+|.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 454
>PRK14532 adenylate kinase; Provisional
Probab=90.90 E-value=0.17 Score=50.01 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 044931 199 IAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~ 218 (889)
|.|+|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999987
No 455
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.90 E-value=0.24 Score=46.65 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|++.|.+|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999877
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.88 E-value=0.27 Score=49.04 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|+|..|.||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998776
No 457
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.87 E-value=0.6 Score=52.11 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999888877
No 458
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.84 E-value=0.19 Score=45.11 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~ 219 (889)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 459
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=0.39 Score=48.84 Aligned_cols=54 Identities=26% Similarity=0.408 Sum_probs=41.1
Q ss_pred cccccchhhhHHHHHHHHhccCC----------CCceEEEEECCCCCcHHHHHHHHhccccccccC
Q 044931 171 EINLVGLEEQINNLVSLLIREHN----------HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF 226 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~----------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 226 (889)
-.++=|-+..+++|.+...-.-. ..++=|-+||.+|.|||-||++|+| +....|
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATF 247 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATF 247 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhh
Confidence 35677899999998887643210 3566788999999999999999999 555445
No 460
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=90.82 E-value=0.94 Score=45.08 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+|+|.|..|+||||+++.+..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~ 28 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKE 28 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 461
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=90.77 E-value=0.31 Score=43.66 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~ 219 (889)
|.+.|.||+||||++..+.+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999883
No 462
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.77 E-value=0.22 Score=47.48 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 463
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=90.74 E-value=0.18 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-++.|+|+|..|.||||||+++.+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 464
>PRK15453 phosphoribulokinase; Provisional
Probab=90.72 E-value=0.22 Score=51.59 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 465
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.71 E-value=0.2 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+|+|.+|+|||||+..+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998875
No 466
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.68 E-value=0.58 Score=47.83 Aligned_cols=52 Identities=27% Similarity=0.318 Sum_probs=28.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcccc-----ccccCCceEEEEeCCcccHHHHHHHHHH
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVD-----VKRHFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
+..|+|.+|.||||++..+..... ....-+..+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987666655220 1123344454555555455555555443
No 467
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.67 E-value=0.27 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|-||+||||+|..+..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~ 22 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSV 22 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 689999999999998888776
No 468
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.63 E-value=0.22 Score=52.46 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|-||+||||+|..+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 588889999999998887665
No 469
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=90.60 E-value=0.74 Score=50.00 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccC---CceEEEEe----CCcccHHHHHHHHHHH
Q 044931 178 EEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF---AKRAWVRV----RSEAKVRDVLIDILQQ 250 (889)
Q Consensus 178 ~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v----~~~~~~~~~~~~i~~~ 250 (889)
+.-.+.|.+.+...+.....+|+|.|.=|+||||+.+.+.+. .+... -.++|++. ....-...++..|..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~--L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE--LKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH--HhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 445667778887764337899999999999999999999884 43331 12333333 3222344556666666
Q ss_pred hhhh
Q 044931 251 INDE 254 (889)
Q Consensus 251 l~~~ 254 (889)
+...
T Consensus 80 l~~~ 83 (325)
T PF07693_consen 80 LEKH 83 (325)
T ss_pred HHHh
Confidence 5544
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.59 E-value=0.36 Score=47.59 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=26.1
Q ss_pred hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 180 QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..++....... -..++|+|..|.|||||++.+..
T Consensus 13 ~~~~~l~~~v~~----g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVEA----RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHhC----CCEEEEECCCCCCHHHHHHHHHh
Confidence 344444444443 36899999999999999999887
No 471
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=90.58 E-value=0.98 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+-+|+|.|..|.|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999965
No 472
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.56 E-value=0.32 Score=48.18 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 473
>PRK01184 hypothetical protein; Provisional
Probab=90.55 E-value=0.21 Score=49.16 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=18.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 443
No 474
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=90.54 E-value=0.21 Score=50.76 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=25.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
+.|+|||-|||||+|.+..+.- .....-..++-|-....
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK 39 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPK 39 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSS
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCC
Confidence 4699999999999999988765 23333334555544443
No 475
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=90.54 E-value=0.22 Score=45.95 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.|.++|..|.|||||++.+-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45889999999999999999774
No 476
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=0.28 Score=54.14 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=37.5
Q ss_pred ccccchhh---hHHHHHHHHhccCC------CCceEEEEECCCCCcHHHHHHHHhccc
Q 044931 172 INLVGLEE---QINNLVSLLIREHN------HNSQVIAIVGEAGSGKTTLTRSVYDRV 220 (889)
Q Consensus 172 ~~~vGr~~---~~~~l~~~L~~~~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 220 (889)
.++-|-|+ |+++|++.|.++.. .=++=|.++|.+|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 45667665 56778888877542 235678999999999999999998843
No 477
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=90.49 E-value=0.32 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|+|.|-||+||||+|..+..
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~ 24 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSA 24 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999998888776
No 478
>PHA02244 ATPase-like protein
Probab=90.49 E-value=0.28 Score=52.79 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=29.2
Q ss_pred ccccchhhhH----HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQI----NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~----~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|....+ ..+..++..+. -|.|+|.+|+|||+||+++++
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~-----PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANI-----PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCC-----CEEEECCCCCCHHHHHHHHHH
Confidence 4456644443 34555554432 378899999999999999998
No 479
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.48 E-value=0.32 Score=49.30 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=26.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
-.+++|+|..|.|||||++.+..- .....+.+++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 62 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI---EKPTRGKIRF 62 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 368999999999999999999983 2233455554
No 480
>PRK14531 adenylate kinase; Provisional
Probab=90.45 E-value=0.22 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.|.|+|.+|+||||+|+.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 481
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.42 E-value=0.36 Score=48.87 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
. .+++|+|..|.|||||++.+..- . ....+.+++
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~ 56 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGL--E-KPDGGTIVL 56 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCC--C-CCCCceEEE
Confidence 6 89999999999999999999873 2 223455554
No 482
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=90.38 E-value=0.3 Score=52.91 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=36.3
Q ss_pred ccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 174 LVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+||....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~-~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-LDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-CCCCEEEECCCCChHHHHHHHHHH
Confidence 57888888888888876543 345689999999999999999987
No 483
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.37 E-value=0.22 Score=47.82 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~ 219 (889)
|+++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998875
No 484
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.32 E-value=0.34 Score=48.84 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=26.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|.|||||++.+... . ....+.+|+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~ 59 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI--I-LPDSGEVLF 59 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEE
Confidence 3468999999999999999999973 2 233456665
No 485
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.29 E-value=0.19 Score=47.62 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+|++|+|.-|+|||||..++...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 479999999999999999999873
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.26 E-value=0.34 Score=49.22 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 487
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.21 E-value=0.35 Score=48.89 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=26.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
-.+++|+|..|.|||||++.+..- .....+.+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl---~~~~~G~i~~ 61 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA---LTPSRGQVRI 61 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 369999999999999999999872 2234555555
No 488
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=90.20 E-value=0.28 Score=48.24 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 489
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.18 E-value=0.23 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 490
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.08 E-value=0.38 Score=46.78 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 36999999999999999999987
No 491
>PLN02165 adenylate isopentenyltransferase
Probab=90.06 E-value=0.25 Score=52.57 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4469999999999999999999873
No 492
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.06 E-value=0.39 Score=46.95 Aligned_cols=23 Identities=39% Similarity=0.777 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 493
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.00 E-value=0.37 Score=48.96 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
-.+++|+|..|.|||||.+.+... .....+.+|+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 59 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL---LKPTSGRATV 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 368999999999999999999973 2234455555
No 494
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.99 E-value=0.41 Score=57.50 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=38.3
Q ss_pred ccccchhhhHHHHHHHHhcc------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIRE------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+||-++.++.|.+.+... .......+.++|..|+|||++|+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999988742 112346789999999999999999987
No 495
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=0.47 Score=53.39 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=40.4
Q ss_pred cccccccchhhhHHHHHHHHhccCC---------CCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 169 EQEINLVGLEEQINNLVSLLIREHN---------HNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..-.++=|.+..+.++.+++..-.. ..++=|.++|.+|.|||.||+++.+.
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 3346677899999988888765221 35677899999999999999999994
No 496
>PRK06921 hypothetical protein; Provisional
Probab=89.96 E-value=0.35 Score=50.60 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=28.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcccccccc-CCceEEEEe
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-FAKRAWVRV 234 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 234 (889)
..-+.++|..|+|||+||.++++. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467999999999999999999994 4333 334667764
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=89.94 E-value=0.41 Score=44.94 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.+++|+|..|.|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3478999999999999999999873
No 498
>PRK12338 hypothetical protein; Provisional
Probab=89.88 E-value=0.28 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+|.|.|.+|+||||+|+.+..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~ 26 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELAR 26 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999988
No 499
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.84 E-value=0.47 Score=52.05 Aligned_cols=52 Identities=29% Similarity=0.282 Sum_probs=35.3
Q ss_pred HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 182 NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 182 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
..+-+.|..+=. .-.++.|.|.+|+|||||+.+++.. ....-..++|++...
T Consensus 69 ~eLD~vLgGGi~-~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 69 EELDRVLGGGLV-PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred HHHHHhhcCCcc-CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 344444443222 4579999999999999999998873 333334677887654
No 500
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=89.80 E-value=0.26 Score=49.00 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|+||.|+||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999999855
Done!