Query 044931
Match_columns 889
No_of_seqs 539 out of 4374
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-43 4.8E-48 411.6 18.9 301 175-505 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 7E-36 2.4E-40 348.7 19.8 274 173-496 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.7E-35 1.9E-39 376.4 26.8 300 168-503 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.8E-32 2.7E-36 318.0 26.3 292 170-500 122-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 3.5E-26 1.2E-30 271.1 19.1 133 520-666 30-165 (606)
6 4eco_A Uncharacterized protein 99.9 4E-26 1.4E-30 270.6 16.6 330 521-877 205-598 (636)
7 3rgz_A Protein brassinosteroid 99.9 2.6E-26 8.9E-31 278.7 14.8 335 522-876 294-714 (768)
8 3v47_A TOLL-like receptor 5B a 99.9 2E-25 6.9E-30 254.8 21.3 336 520-877 28-406 (455)
9 4eco_A Uncharacterized protein 99.9 4.1E-26 1.4E-30 270.5 14.7 281 582-873 204-543 (636)
10 4ecn_A Leucine-rich repeat pro 99.9 9E-26 3.1E-30 271.9 17.3 331 521-878 447-839 (876)
11 2z63_A TOLL-like receptor 4, v 99.9 1.2E-25 4E-30 264.7 17.9 341 520-877 26-529 (570)
12 3o6n_A APL1; leucine-rich repe 99.9 2.2E-25 7.4E-30 248.9 18.8 305 542-878 41-351 (390)
13 3rgz_A Protein brassinosteroid 99.9 7.8E-26 2.7E-30 274.5 14.9 287 582-876 245-548 (768)
14 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.6E-30 270.4 15.7 329 538-878 440-818 (876)
15 4fmz_A Internalin; leucine ric 99.9 4.6E-25 1.6E-29 242.1 18.5 277 582-878 64-345 (347)
16 3t6q_A CD180 antigen; protein- 99.9 1.6E-24 5.6E-29 256.7 23.7 287 585-877 255-558 (606)
17 3oja_B Anopheles plasmodium-re 99.9 5.9E-25 2E-29 259.1 18.1 304 543-878 48-357 (597)
18 3t6q_A CD180 antigen; protein- 99.9 8.2E-25 2.8E-29 259.3 18.4 340 520-877 31-436 (606)
19 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-24 6.2E-29 251.3 18.5 131 741-877 322-479 (520)
20 2id5_A Lingo-1, leucine rich r 99.9 5.2E-24 1.8E-28 244.6 21.6 289 545-877 31-331 (477)
21 3vq2_A TLR4, TOLL-like recepto 99.9 6.2E-25 2.1E-29 260.4 13.4 336 522-875 56-554 (606)
22 3o6n_A APL1; leucine-rich repe 99.9 5.4E-24 1.8E-28 237.6 20.2 282 582-877 43-329 (390)
23 1o6v_A Internalin A; bacterial 99.9 1.2E-23 4.2E-28 240.4 21.8 315 522-877 46-386 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-24 1.2E-28 251.1 16.0 130 742-877 352-508 (562)
25 1o6v_A Internalin A; bacterial 99.9 1.1E-23 3.8E-28 240.7 19.5 294 543-876 43-341 (466)
26 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-24 2E-28 247.1 17.2 307 522-854 21-481 (520)
27 3oja_B Anopheles plasmodium-re 99.9 1.6E-23 5.4E-28 246.9 20.4 282 582-877 49-335 (597)
28 2z81_A CD282 antigen, TOLL-lik 99.9 8.9E-24 3E-28 247.3 16.8 339 521-877 25-421 (549)
29 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-23 1.5E-27 252.9 22.3 180 520-713 22-215 (844)
30 4fmz_A Internalin; leucine ric 99.9 6.2E-23 2.1E-27 225.2 19.8 298 521-854 43-346 (347)
31 4fcg_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 222.4 18.8 231 582-875 79-310 (328)
32 3bz5_A Internalin-J, INLJ; leu 99.9 6.4E-23 2.2E-27 232.5 18.4 295 541-877 37-350 (457)
33 3v47_A TOLL-like receptor 5B a 99.9 1.4E-23 4.9E-28 239.4 13.1 315 545-877 29-382 (455)
34 1ziw_A TOLL-like receptor 3; i 99.9 8.2E-23 2.8E-27 245.5 20.1 264 520-799 23-304 (680)
35 2z63_A TOLL-like receptor 4, v 99.9 1.2E-23 4E-28 247.5 10.9 125 545-683 27-155 (570)
36 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-22 4.6E-27 243.7 19.7 132 522-667 49-184 (680)
37 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-22 4.7E-27 248.6 18.2 308 544-876 22-391 (844)
38 2id5_A Lingo-1, leucine rich r 99.9 4.4E-23 1.5E-27 236.7 12.4 294 520-849 30-329 (477)
39 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-22 4.8E-27 237.1 16.3 335 522-877 50-508 (549)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.5E-27 236.9 16.3 326 524-877 33-484 (562)
41 4g8a_A TOLL-like receptor 4; l 99.9 6.6E-22 2.3E-26 235.7 20.3 340 520-877 50-578 (635)
42 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-22 1.5E-26 214.6 12.3 248 546-877 50-302 (313)
43 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-21 9.1E-26 210.6 17.6 285 546-877 33-331 (332)
44 1xku_A Decorin; proteoglycan, 99.9 5.9E-21 2E-25 207.7 18.2 286 545-876 30-329 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 6.9E-21 2.4E-25 207.3 17.8 284 523-851 34-331 (332)
46 3bz5_A Internalin-J, INLJ; leu 99.8 5.5E-21 1.9E-25 216.6 16.5 266 582-876 40-328 (457)
47 4fcg_A Uncharacterized protein 99.8 5.4E-21 1.9E-25 207.2 14.3 225 545-854 80-314 (328)
48 1jl5_A Outer protein YOPM; leu 99.8 3.4E-20 1.1E-24 210.0 20.7 299 521-877 90-407 (454)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-20 4.9E-25 202.6 12.4 248 522-854 50-305 (313)
50 1xku_A Decorin; proteoglycan, 99.8 4E-20 1.4E-24 201.1 15.5 283 523-849 32-328 (330)
51 2z80_A TOLL-like receptor 2, v 99.8 6.9E-20 2.3E-24 201.2 15.7 248 584-876 52-311 (353)
52 4g8a_A TOLL-like receptor 4; l 99.8 4.5E-20 1.5E-24 219.8 14.5 313 521-854 75-580 (635)
53 3g06_A SSPH2 (leucine-rich rep 99.8 3.6E-19 1.2E-23 207.7 19.4 255 546-877 40-295 (622)
54 1z7x_W Ribonuclease inhibitor; 99.8 5.4E-22 1.8E-26 226.8 -4.8 63 582-644 54-126 (461)
55 1jl5_A Outer protein YOPM; leu 99.8 7.5E-19 2.6E-23 198.9 20.9 292 524-877 73-368 (454)
56 3o53_A Protein LRIM1, AGAP0063 99.8 6.2E-20 2.1E-24 198.2 10.3 278 573-883 25-306 (317)
57 2z66_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 192.7 14.7 105 546-665 28-137 (306)
58 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-19 1.5E-23 207.0 17.0 267 523-865 41-308 (622)
59 2z66_A Variable lymphocyte rec 99.8 2.8E-19 9.6E-24 192.2 13.8 226 584-854 28-261 (306)
60 1ozn_A Reticulon 4 receptor; N 99.8 4.7E-19 1.6E-23 188.3 13.1 246 585-876 33-284 (285)
61 2z80_A TOLL-like receptor 2, v 99.8 2.5E-19 8.4E-24 196.8 11.0 251 546-828 52-313 (353)
62 3zyi_A Leucine-rich repeat-con 99.8 1.5E-18 5.3E-23 197.2 17.7 223 546-827 75-301 (452)
63 3oja_A Leucine-rich immune mol 99.8 6.5E-19 2.2E-23 201.4 14.7 235 582-874 32-270 (487)
64 3zyi_A Leucine-rich repeat-con 99.8 1.8E-18 6.2E-23 196.6 18.2 224 584-877 75-301 (452)
65 3zyj_A Leucine-rich repeat-con 99.8 2E-18 6.9E-23 195.5 17.4 222 546-827 64-290 (440)
66 3zyj_A Leucine-rich repeat-con 99.8 3.4E-18 1.1E-22 193.7 18.7 224 584-877 64-290 (440)
67 1wwl_A Monocyte differentiatio 99.8 2.8E-19 9.5E-24 192.6 7.0 247 542-877 39-307 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-18 4.6E-23 187.7 11.4 237 584-877 10-248 (317)
69 3ogk_B Coronatine-insensitive 99.7 2.9E-19 9.9E-24 211.0 3.4 61 815-877 462-524 (592)
70 3ogk_B Coronatine-insensitive 99.7 2.5E-19 8.5E-24 211.6 1.7 337 523-877 113-499 (592)
71 1ozn_A Reticulon 4 receptor; N 99.7 3.4E-17 1.2E-21 173.9 17.2 76 587-665 14-91 (285)
72 3oja_A Leucine-rich immune mol 99.7 2.2E-18 7.4E-23 197.1 7.4 243 543-854 31-276 (487)
73 1wwl_A Monocyte differentiatio 99.7 3.9E-18 1.3E-22 183.6 8.2 254 524-854 45-309 (312)
74 1z7x_W Ribonuclease inhibitor; 99.7 2E-19 6.9E-24 205.4 -3.2 315 545-877 2-409 (461)
75 1h6u_A Internalin H; cell adhe 99.7 1.9E-16 6.3E-21 169.9 16.5 198 582-861 39-236 (308)
76 3rfs_A Internalin B, repeat mo 99.7 4.3E-17 1.5E-21 171.7 10.2 207 582-865 39-246 (272)
77 1p9a_G Platelet glycoprotein I 99.7 3E-16 1E-20 166.6 15.5 85 767-854 124-208 (290)
78 2o6q_A Variable lymphocyte rec 99.7 5.4E-16 1.9E-20 163.1 16.8 199 585-854 17-218 (270)
79 1h6u_A Internalin H; cell adhe 99.7 2.8E-16 9.7E-21 168.5 14.5 200 541-835 36-235 (308)
80 2p1m_B Transport inhibitor res 99.7 1E-18 3.5E-23 206.4 -5.7 339 523-878 106-518 (594)
81 1p9a_G Platelet glycoprotein I 99.7 6.7E-16 2.3E-20 163.9 16.2 111 542-670 6-116 (290)
82 3rfs_A Internalin B, repeat mo 99.7 4.4E-16 1.5E-20 163.9 14.4 213 540-843 35-249 (272)
83 2p1m_B Transport inhibitor res 99.7 8E-18 2.7E-22 198.7 1.0 311 544-874 154-539 (594)
84 2xwt_C Thyrotropin receptor; s 99.7 2.6E-16 8.7E-21 162.4 11.7 198 585-877 32-237 (239)
85 2ast_B S-phase kinase-associat 99.6 6.6E-17 2.3E-21 176.1 6.2 232 584-863 70-315 (336)
86 2z62_A TOLL-like receptor 4, v 99.6 1.9E-15 6.5E-20 159.5 16.7 203 584-854 28-237 (276)
87 2z62_A TOLL-like receptor 4, v 99.6 1E-15 3.4E-20 161.6 12.3 124 545-682 27-154 (276)
88 2o6q_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 154.9 17.5 198 547-827 17-216 (270)
89 2ca6_A RAN GTPase-activating p 99.6 9.1E-17 3.1E-21 178.6 0.8 267 582-875 30-339 (386)
90 4glp_A Monocyte differentiatio 99.6 1.4E-15 4.6E-20 163.5 8.7 84 582-665 89-180 (310)
91 2xwt_C Thyrotropin receptor; s 99.6 2E-15 6.7E-20 155.7 9.0 198 545-827 30-237 (239)
92 4ay9_X Follicle-stimulating ho 99.6 7.8E-15 2.7E-19 160.4 12.6 239 587-875 12-255 (350)
93 1h6t_A Internalin B; cell adhe 99.6 2.4E-14 8.2E-19 152.0 15.4 169 582-828 44-212 (291)
94 2ca6_A RAN GTPase-activating p 99.6 2.2E-16 7.6E-21 175.4 -0.4 117 539-666 25-171 (386)
95 2ast_B S-phase kinase-associat 99.6 1.5E-15 5.2E-20 165.3 5.8 246 583-876 46-303 (336)
96 3goz_A Leucine-rich repeat-con 99.5 3.8E-15 1.3E-19 163.8 7.0 93 573-667 13-122 (362)
97 4glp_A Monocyte differentiatio 99.5 3.9E-14 1.3E-18 152.1 14.3 85 582-666 115-209 (310)
98 1h6t_A Internalin B; cell adhe 99.5 1.2E-14 4.1E-19 154.3 10.0 195 583-859 23-217 (291)
99 3cvr_A Invasion plasmid antige 99.5 7.4E-14 2.5E-18 160.8 15.8 188 585-865 60-254 (571)
100 3m19_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 142.2 15.9 176 584-828 14-191 (251)
101 4ay9_X Follicle-stimulating ho 99.5 9.6E-14 3.3E-18 151.7 14.3 219 584-849 30-255 (350)
102 3cvr_A Invasion plasmid antige 99.5 1.2E-13 4E-18 159.1 13.8 188 547-840 60-254 (571)
103 1m9s_A Internalin B; cell inva 99.5 5.7E-14 2E-18 163.6 10.2 80 582-665 41-120 (605)
104 3qfl_A MLA10; coiled-coil, (CC 99.5 1.3E-14 4.5E-19 128.4 3.6 75 5-81 1-84 (115)
105 1m9s_A Internalin B; cell inva 99.5 1.3E-13 4.4E-18 160.7 11.5 107 541-667 38-144 (605)
106 3m19_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 138.7 14.4 153 546-713 35-190 (251)
107 2o6s_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 135.2 13.0 76 587-665 10-87 (208)
108 3goz_A Leucine-rich repeat-con 99.4 5.9E-14 2E-18 154.3 5.7 241 543-831 19-299 (362)
109 1xeu_A Internalin C; cellular 99.4 2.2E-13 7.5E-18 142.2 9.1 81 582-666 17-97 (263)
110 1dce_A Protein (RAB geranylger 99.4 1.1E-14 3.9E-19 168.5 -1.4 120 743-873 441-567 (567)
111 2o6s_A Variable lymphocyte rec 99.4 8.8E-13 3E-17 132.5 10.9 83 582-664 50-134 (208)
112 2qen_A Walker-type ATPase; unk 99.4 5.3E-11 1.8E-15 130.0 23.0 279 169-497 9-349 (350)
113 4ezg_A Putative uncharacterize 99.3 1.8E-12 6E-17 129.0 9.8 149 543-713 41-192 (197)
114 1w5s_A Origin recognition comp 99.3 3.7E-11 1.3E-15 134.5 20.9 286 171-476 21-372 (412)
115 4b8c_D Glucose-repressible alc 99.3 1.3E-12 4.4E-17 156.2 9.2 106 574-682 216-321 (727)
116 3e6j_A Variable lymphocyte rec 99.3 8.4E-12 2.9E-16 127.2 12.8 112 545-670 39-151 (229)
117 2ell_A Acidic leucine-rich nuc 99.3 8.4E-12 2.9E-16 120.6 12.2 137 520-672 22-165 (168)
118 3e6j_A Variable lymphocyte rec 99.3 4.5E-12 1.6E-16 129.3 10.6 134 520-667 38-172 (229)
119 4ezg_A Putative uncharacterize 99.3 3.8E-12 1.3E-16 126.6 9.5 131 740-878 63-193 (197)
120 1xeu_A Internalin C; cellular 99.3 3.6E-12 1.2E-16 132.9 8.3 147 541-712 36-182 (263)
121 2v9t_B SLIT homolog 2 protein 99.3 1.5E-11 5E-16 124.6 11.6 110 546-669 32-143 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 1.6E-11 5.6E-16 124.2 11.9 127 586-713 34-164 (220)
123 2fna_A Conserved hypothetical 99.3 1.9E-10 6.5E-15 125.9 20.7 279 170-496 11-356 (357)
124 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 125.1 10.1 132 520-665 30-163 (220)
125 2je0_A Acidic leucine-rich nuc 99.2 4.1E-12 1.4E-16 120.1 5.6 80 582-661 62-147 (149)
126 2xot_A Amphoterin-induced prot 99.2 1.8E-11 6.2E-16 134.2 11.6 82 585-666 40-124 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.2 2.1E-11 7.1E-16 123.5 10.4 124 546-682 32-158 (220)
128 1a9n_A U2A', U2A'; complex (nu 99.2 4.9E-12 1.7E-16 123.2 5.2 109 542-667 15-126 (176)
129 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4.1E-16 119.5 7.8 83 582-666 22-107 (168)
130 4b8c_D Glucose-repressible alc 99.2 2.7E-12 9.2E-17 153.5 3.6 121 589-712 206-326 (727)
131 2je0_A Acidic leucine-rich nuc 99.2 2.6E-11 8.9E-16 114.5 9.7 124 545-683 16-146 (149)
132 1a9n_A U2A', U2A'; complex (nu 99.2 4.7E-11 1.6E-15 116.2 8.3 128 520-665 17-151 (176)
133 2xot_A Amphoterin-induced prot 99.1 6.6E-11 2.2E-15 129.7 9.7 90 582-671 62-153 (361)
134 3sb4_A Hypothetical leucine ri 99.1 8.5E-11 2.9E-15 127.1 8.6 101 742-847 225-328 (329)
135 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4E-15 134.9 9.6 94 586-682 443-538 (567)
136 2qby_B CDC6 homolog 3, cell di 99.1 5.9E-09 2E-13 115.3 22.9 283 172-476 20-340 (384)
137 3sb4_A Hypothetical leucine ri 99.1 6.6E-11 2.3E-15 127.9 5.8 288 544-873 23-328 (329)
138 2wfh_A SLIT homolog 2 protein 99.1 3.1E-10 1.1E-14 112.1 9.7 83 582-664 52-136 (193)
139 1w8a_A SLIT protein; signaling 99.1 3.1E-10 1.1E-14 112.1 9.5 82 585-666 30-114 (192)
140 2wfh_A SLIT homolog 2 protein 99.0 7.1E-10 2.4E-14 109.5 10.6 105 549-671 13-119 (193)
141 1w8a_A SLIT protein; signaling 99.0 3.5E-10 1.2E-14 111.6 8.4 107 546-666 29-138 (192)
142 2o6r_A Variable lymphocyte rec 99.0 6.4E-10 2.2E-14 108.2 10.2 108 545-666 27-136 (177)
143 2v1u_A Cell division control p 99.0 2.7E-08 9.1E-13 110.0 24.6 285 172-476 19-352 (387)
144 2r9u_A Variable lymphocyte rec 99.0 3.5E-10 1.2E-14 109.6 8.0 93 584-676 33-127 (174)
145 1fnn_A CDC6P, cell division co 99.0 3.8E-08 1.3E-12 108.9 24.8 308 172-501 17-385 (389)
146 1ds9_A Outer arm dynein; leuci 99.0 1.4E-11 4.7E-16 122.6 -4.0 113 598-714 39-152 (198)
147 2o6r_A Variable lymphocyte rec 99.0 1.7E-09 6E-14 105.1 10.7 90 582-671 26-117 (177)
148 1njg_A DNA polymerase III subu 99.0 3E-09 1E-13 109.4 12.8 190 172-378 23-231 (250)
149 3g39_A Variable lymphocyte rec 99.0 9.4E-10 3.2E-14 106.2 7.8 86 584-669 30-117 (170)
150 1ds9_A Outer arm dynein; leuci 98.9 1.1E-11 3.7E-16 123.4 -6.8 107 541-665 43-151 (198)
151 2qby_A CDC6 homolog 1, cell di 98.9 4.4E-08 1.5E-12 108.2 21.8 282 172-476 20-349 (386)
152 2r9u_A Variable lymphocyte rec 98.9 5.4E-09 1.9E-13 101.1 9.6 95 546-654 33-128 (174)
153 4fdw_A Leucine rich hypothetic 98.8 5.6E-08 1.9E-12 107.3 17.8 245 573-875 127-379 (401)
154 4fdw_A Leucine rich hypothetic 98.8 8E-08 2.7E-12 106.1 17.0 107 539-664 129-236 (401)
155 3g39_A Variable lymphocyte rec 98.8 1.4E-08 4.7E-13 97.9 9.4 93 545-651 29-122 (170)
156 2chg_A Replication factor C sm 98.8 7.7E-08 2.6E-12 97.1 14.5 187 172-376 17-205 (226)
157 2ifg_A High affinity nerve gro 98.6 5.8E-08 2E-12 105.6 7.8 84 582-665 29-114 (347)
158 1sxj_B Activator 1 37 kDa subu 98.5 1.6E-07 5.6E-12 100.8 9.3 183 172-377 21-212 (323)
159 1hqc_A RUVB; extended AAA-ATPa 98.5 2.8E-07 9.6E-12 99.0 9.2 188 172-378 12-214 (324)
160 2ra8_A Uncharacterized protein 98.4 7.9E-08 2.7E-12 104.1 4.4 141 740-886 169-329 (362)
161 4fs7_A Uncharacterized protein 98.4 5.8E-07 2E-11 99.5 11.3 301 539-871 64-393 (394)
162 3un9_A NLR family member X1; l 98.4 3.7E-08 1.3E-12 107.7 0.9 110 546-664 72-193 (372)
163 2ifg_A High affinity nerve gro 98.4 4.3E-07 1.5E-11 98.6 7.9 95 538-647 24-119 (347)
164 1iqp_A RFCS; clamp loader, ext 98.3 9.4E-07 3.2E-11 95.0 9.6 188 172-377 25-214 (327)
165 3un9_A NLR family member X1; l 98.2 6.3E-08 2.2E-12 105.8 -2.6 108 545-665 100-222 (372)
166 3e4g_A ATP synthase subunit S, 98.2 4.6E-07 1.6E-11 86.0 3.0 88 767-854 61-153 (176)
167 1jr3_A DNA polymerase III subu 98.1 6.2E-06 2.1E-10 90.4 10.2 181 172-375 16-221 (373)
168 4fs7_A Uncharacterized protein 98.1 1.5E-05 5.2E-10 87.9 12.9 280 576-876 65-376 (394)
169 2ra8_A Uncharacterized protein 98.1 9.5E-06 3.3E-10 87.7 10.0 79 582-663 137-228 (362)
170 4gt6_A Cell surface protein; l 98.0 1.8E-05 6.2E-10 87.3 12.1 124 740-874 262-386 (394)
171 1io0_A Tropomodulin; LRR prote 97.9 4.2E-06 1.4E-10 81.5 3.6 113 542-665 32-162 (185)
172 3pfi_A Holliday junction ATP-d 97.9 7.2E-05 2.5E-09 80.6 13.7 178 171-375 28-227 (338)
173 2chq_A Replication factor C sm 97.9 1.2E-05 4.1E-10 85.9 6.7 177 172-375 17-204 (319)
174 1sxj_D Activator 1 41 kDa subu 97.8 7.5E-05 2.6E-09 80.9 12.0 187 172-374 37-234 (353)
175 4gt6_A Cell surface protein; l 97.8 0.00016 5.5E-09 79.7 14.4 299 540-879 57-370 (394)
176 3e4g_A ATP synthase subunit S, 97.8 5.2E-06 1.8E-10 78.7 1.7 86 791-878 61-151 (176)
177 3rw6_A Nuclear RNA export fact 97.8 2E-05 7E-10 80.6 6.0 80 582-662 168-259 (267)
178 3bos_A Putative DNA replicatio 97.6 0.00034 1.2E-08 71.0 12.8 174 172-375 28-217 (242)
179 3te6_A Regulatory protein SIR3 97.6 0.00049 1.7E-08 72.2 13.7 164 169-337 17-212 (318)
180 4h09_A Hypothetical leucine ri 97.6 0.00053 1.8E-08 75.0 14.5 102 741-847 238-340 (379)
181 1sxj_E Activator 1 40 kDa subu 97.5 0.00036 1.2E-08 75.6 11.9 190 172-375 14-237 (354)
182 1sxj_A Activator 1 95 kDa subu 97.5 0.00053 1.8E-08 78.1 12.7 186 172-377 39-255 (516)
183 3d8b_A Fidgetin-like protein 1 97.4 0.003 1E-07 68.2 17.5 191 171-375 83-295 (357)
184 3h4m_A Proteasome-activating n 97.4 0.0009 3.1E-08 69.9 13.0 161 171-337 16-202 (285)
185 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0023 7.9E-08 65.7 15.3 184 172-369 6-215 (262)
186 2z4s_A Chromosomal replication 97.4 0.00076 2.6E-08 75.0 12.1 150 196-372 130-303 (440)
187 1jbk_A CLPB protein; beta barr 97.3 0.00016 5.5E-09 70.4 5.5 45 172-219 22-66 (195)
188 3pvs_A Replication-associated 97.3 0.00046 1.6E-08 76.7 9.5 185 172-374 26-214 (447)
189 1sxj_C Activator 1 40 kDa subu 97.3 0.00064 2.2E-08 73.1 10.2 176 172-371 25-208 (340)
190 3syl_A Protein CBBX; photosynt 97.3 0.0017 5.8E-08 68.6 13.2 153 172-337 31-218 (309)
191 1l8q_A Chromosomal replication 97.2 0.0039 1.3E-07 66.4 15.3 159 181-369 23-202 (324)
192 3u61_B DNA polymerase accessor 97.2 0.00048 1.6E-08 73.5 8.0 171 172-371 26-212 (324)
193 1a5t_A Delta prime, HOLB; zinc 97.2 0.0014 4.9E-08 70.0 11.7 169 178-375 8-205 (334)
194 1d2n_A N-ethylmaleimide-sensit 97.2 0.004 1.4E-07 64.4 14.7 48 172-219 33-87 (272)
195 3uk6_A RUVB-like 2; hexameric 97.2 0.0036 1.2E-07 67.9 15.0 48 171-219 43-93 (368)
196 2p65_A Hypothetical protein PF 97.2 0.00023 7.7E-09 68.9 4.7 45 172-219 22-66 (187)
197 3rw6_A Nuclear RNA export fact 97.1 0.00026 9E-09 72.4 4.6 81 766-847 169-258 (267)
198 4h09_A Hypothetical leucine ri 97.1 0.0028 9.6E-08 69.2 13.0 106 722-832 237-347 (379)
199 3ec2_A DNA replication protein 97.1 0.0026 8.7E-08 61.2 10.9 43 177-219 19-61 (180)
200 1io0_A Tropomodulin; LRR prote 97.1 0.00025 8.4E-09 68.8 3.3 90 573-665 27-134 (185)
201 3eie_A Vacuolar protein sortin 97.0 0.0033 1.1E-07 66.8 11.7 188 171-375 17-228 (322)
202 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.0087 3E-07 63.4 14.3 184 171-375 11-223 (322)
203 3vfd_A Spastin; ATPase, microt 96.9 0.0094 3.2E-07 65.2 14.4 48 171-218 114-170 (389)
204 2zan_A Vacuolar protein sortin 96.9 0.032 1.1E-06 62.0 18.6 50 170-219 132-190 (444)
205 3n70_A Transport activator; si 96.8 0.0008 2.7E-08 62.2 4.5 46 173-219 2-47 (145)
206 2qp9_X Vacuolar protein sortin 96.7 0.019 6.5E-07 61.7 14.9 188 171-375 50-261 (355)
207 4b4t_J 26S protease regulatory 96.7 0.023 7.9E-07 61.1 15.1 155 169-337 145-333 (405)
208 4b4t_L 26S protease subunit RP 96.6 0.02 6.7E-07 62.7 13.6 153 171-337 180-366 (437)
209 4b4t_M 26S protease regulatory 96.5 0.03 1E-06 61.1 15.0 163 169-337 178-366 (434)
210 3co5_A Putative two-component 96.4 0.0011 3.6E-08 61.2 1.8 47 172-219 4-50 (143)
211 2gno_A DNA polymerase III, gam 96.3 0.0084 2.9E-07 62.8 8.8 144 176-336 1-152 (305)
212 4b4t_H 26S protease regulatory 96.3 0.062 2.1E-06 58.6 15.6 152 172-337 209-394 (467)
213 4b4t_I 26S protease regulatory 96.2 0.071 2.4E-06 57.6 15.3 153 171-337 181-367 (437)
214 3pxi_A Negative regulator of g 96.2 0.03 1E-06 67.0 13.9 44 172-218 180-223 (758)
215 2w58_A DNAI, primosome compone 96.2 0.0048 1.7E-07 60.5 5.8 54 179-234 36-90 (202)
216 3pxg_A Negative regulator of g 96.2 0.0033 1.1E-07 70.5 5.0 44 172-218 180-223 (468)
217 1rz3_A Hypothetical protein rb 96.0 0.0067 2.3E-07 59.4 5.7 43 176-218 2-44 (201)
218 3cf0_A Transitional endoplasmi 96.0 0.0066 2.3E-07 63.8 5.7 47 172-218 15-71 (301)
219 2bjv_A PSP operon transcriptio 95.9 0.0076 2.6E-07 62.0 6.0 47 172-219 6-52 (265)
220 3b9p_A CG5977-PA, isoform A; A 95.9 0.0069 2.3E-07 63.5 5.5 48 171-218 20-76 (297)
221 1ofh_A ATP-dependent HSL prote 95.6 0.0069 2.4E-07 63.8 4.3 48 171-218 14-72 (310)
222 1in4_A RUVB, holliday junction 95.6 0.0083 2.8E-07 64.0 4.9 47 172-219 25-74 (334)
223 1ojl_A Transcriptional regulat 95.5 0.0093 3.2E-07 62.6 4.7 46 172-218 2-47 (304)
224 3pxi_A Negative regulator of g 95.4 0.047 1.6E-06 65.3 10.8 47 172-218 491-543 (758)
225 4fcw_A Chaperone protein CLPB; 95.3 0.014 4.9E-07 61.4 5.5 47 172-218 17-69 (311)
226 1lv7_A FTSH; alpha/beta domain 95.3 0.016 5.4E-07 59.2 5.6 48 171-218 11-67 (257)
227 3c8u_A Fructokinase; YP_612366 95.2 0.015 5.2E-07 57.2 4.7 38 180-218 7-44 (208)
228 1qvr_A CLPB protein; coiled co 95.2 0.011 3.6E-07 71.9 4.2 45 172-219 170-214 (854)
229 2r44_A Uncharacterized protein 95.1 0.013 4.4E-07 62.5 4.4 42 172-218 27-68 (331)
230 2r62_A Cell division protease 95.0 0.012 4E-07 60.7 3.4 48 172-219 11-67 (268)
231 1r6b_X CLPA protein; AAA+, N-t 95.0 0.018 6.1E-07 69.0 5.5 44 172-218 186-229 (758)
232 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.018 6E-07 64.6 4.6 43 172-219 22-64 (500)
233 3lw7_A Adenylate kinase relate 94.7 0.015 5.2E-07 55.2 3.3 20 197-216 2-21 (179)
234 3hu3_A Transitional endoplasmi 94.7 0.021 7.3E-07 63.9 4.9 47 172-218 204-260 (489)
235 3hws_A ATP-dependent CLP prote 94.6 0.025 8.5E-07 61.1 4.9 47 172-218 15-73 (363)
236 1qhx_A CPT, protein (chloramph 94.6 0.017 5.8E-07 55.1 3.1 22 197-218 4-25 (178)
237 2c9o_A RUVB-like 1; hexameric 94.5 0.03 1E-06 62.5 5.5 48 171-219 36-86 (456)
238 1ixz_A ATP-dependent metallopr 94.5 0.036 1.2E-06 56.4 5.7 48 172-219 16-72 (254)
239 3rfe_A Platelet glycoprotein I 94.5 0.05 1.7E-06 48.8 5.9 54 588-644 12-68 (130)
240 3fwy_A Light-independent proto 94.5 0.02 6.8E-07 60.1 3.7 41 195-237 47-87 (314)
241 4b4t_K 26S protease regulatory 94.5 0.037 1.3E-06 60.4 5.9 49 170-218 170-228 (428)
242 3vaa_A Shikimate kinase, SK; s 94.4 0.02 6.9E-07 55.8 3.4 24 195-218 24-47 (199)
243 3rfe_A Platelet glycoprotein I 94.4 0.044 1.5E-06 49.1 5.3 53 611-665 11-66 (130)
244 3kb2_A SPBC2 prophage-derived 94.4 0.019 6.7E-07 54.3 3.1 22 197-218 2-23 (173)
245 1ly1_A Polynucleotide kinase; 94.4 0.022 7.5E-07 54.4 3.5 22 197-218 3-24 (181)
246 1zp6_A Hypothetical protein AT 94.4 0.023 8E-07 54.9 3.7 24 195-218 8-31 (191)
247 2ga8_A Hypothetical 39.9 kDa p 94.3 0.032 1.1E-06 58.8 4.9 45 174-218 1-46 (359)
248 1odf_A YGR205W, hypothetical 3 94.3 0.041 1.4E-06 57.0 5.6 24 195-218 30-53 (290)
249 2kjq_A DNAA-related protein; s 94.1 0.019 6.3E-07 53.1 2.3 38 197-236 37-74 (149)
250 1iy2_A ATP-dependent metallopr 94.1 0.045 1.5E-06 56.5 5.5 51 169-219 37-96 (278)
251 1pgv_A TMD-1, tropomodulin TMD 94.1 0.043 1.5E-06 52.8 4.8 110 544-663 39-166 (197)
252 1kag_A SKI, shikimate kinase I 94.1 0.023 7.7E-07 53.9 2.8 22 197-218 5-26 (173)
253 2x8a_A Nuclear valosin-contain 94.0 0.032 1.1E-06 57.5 4.0 48 171-218 9-66 (274)
254 2qgz_A Helicase loader, putati 94.0 0.055 1.9E-06 56.7 5.8 56 177-234 133-189 (308)
255 3trf_A Shikimate kinase, SK; a 93.9 0.027 9.3E-07 54.1 3.2 23 196-218 5-27 (185)
256 1um8_A ATP-dependent CLP prote 93.9 0.042 1.4E-06 59.6 4.9 47 172-218 21-94 (376)
257 3tqc_A Pantothenate kinase; bi 93.9 0.054 1.8E-06 56.8 5.4 44 175-218 70-114 (321)
258 3t61_A Gluconokinase; PSI-biol 93.8 0.026 9E-07 55.1 2.7 23 196-218 18-40 (202)
259 3uie_A Adenylyl-sulfate kinase 93.8 0.037 1.3E-06 53.9 3.8 24 195-218 24-47 (200)
260 3t15_A Ribulose bisphosphate c 93.8 0.034 1.1E-06 58.0 3.6 25 195-219 35-59 (293)
261 1uj2_A Uridine-cytidine kinase 93.7 0.034 1.1E-06 56.6 3.5 24 195-218 21-44 (252)
262 3tlx_A Adenylate kinase 2; str 93.7 0.061 2.1E-06 54.2 5.4 39 179-218 13-51 (243)
263 1kgd_A CASK, peripheral plasma 93.7 0.034 1.2E-06 53.2 3.4 23 196-218 5-27 (180)
264 2rhm_A Putative kinase; P-loop 93.7 0.034 1.2E-06 53.7 3.3 24 195-218 4-27 (193)
265 2cvh_A DNA repair and recombin 93.7 0.098 3.4E-06 51.6 6.8 44 195-243 19-62 (220)
266 1zuh_A Shikimate kinase; alpha 93.7 0.035 1.2E-06 52.4 3.2 24 195-218 6-29 (168)
267 1gvn_B Zeta; postsegregational 93.6 0.059 2E-06 55.9 5.2 24 195-218 32-55 (287)
268 1knq_A Gluconate kinase; ALFA/ 93.6 0.036 1.2E-06 52.7 3.3 24 195-218 7-30 (175)
269 2ce7_A Cell division protein F 93.6 0.06 2E-06 59.8 5.5 48 171-218 15-71 (476)
270 4eun_A Thermoresistant glucoki 93.6 0.038 1.3E-06 53.9 3.6 24 195-218 28-51 (200)
271 3iij_A Coilin-interacting nucl 93.6 0.033 1.1E-06 53.2 3.1 23 196-218 11-33 (180)
272 1nks_A Adenylate kinase; therm 93.6 0.034 1.2E-06 53.7 3.1 22 197-218 2-23 (194)
273 2p5t_B PEZT; postsegregational 93.5 0.048 1.6E-06 55.5 4.2 40 179-218 13-54 (253)
274 1kht_A Adenylate kinase; phosp 93.5 0.036 1.2E-06 53.4 3.2 22 197-218 4-25 (192)
275 1ypw_A Transitional endoplasmi 93.5 0.049 1.7E-06 65.2 4.9 49 170-218 202-260 (806)
276 2plr_A DTMP kinase, probable t 93.5 0.091 3.1E-06 51.5 6.2 22 197-218 5-26 (213)
277 1y63_A LMAJ004144AAA protein; 93.5 0.042 1.4E-06 52.8 3.5 24 195-218 9-32 (184)
278 4gp7_A Metallophosphoesterase; 93.4 0.041 1.4E-06 52.1 3.3 24 195-218 8-31 (171)
279 1via_A Shikimate kinase; struc 93.4 0.035 1.2E-06 52.8 2.8 22 197-218 5-26 (175)
280 2qt1_A Nicotinamide riboside k 93.4 0.045 1.5E-06 53.7 3.6 24 195-218 20-43 (207)
281 2bdt_A BH3686; alpha-beta prot 93.4 0.044 1.5E-06 52.8 3.5 22 197-218 3-24 (189)
282 2hf9_A Probable hydrogenase ni 93.4 0.066 2.3E-06 53.2 4.9 38 179-219 24-61 (226)
283 1tev_A UMP-CMP kinase; ploop, 93.4 0.043 1.5E-06 53.0 3.5 23 196-218 3-25 (196)
284 2jaq_A Deoxyguanosine kinase; 93.3 0.04 1.4E-06 53.7 3.2 21 198-218 2-22 (205)
285 1ukz_A Uridylate kinase; trans 93.3 0.046 1.6E-06 53.3 3.7 24 195-218 14-37 (203)
286 2qor_A Guanylate kinase; phosp 93.3 0.04 1.4E-06 53.9 3.1 24 195-218 11-34 (204)
287 1n0w_A DNA repair protein RAD5 93.3 0.14 4.9E-06 51.3 7.4 48 195-242 23-74 (243)
288 1uf9_A TT1252 protein; P-loop, 93.3 0.045 1.5E-06 53.3 3.5 24 195-218 7-30 (203)
289 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.046 1.6E-06 55.8 3.6 24 195-218 3-26 (260)
290 2c95_A Adenylate kinase 1; tra 93.2 0.043 1.5E-06 53.1 3.2 24 195-218 8-31 (196)
291 2iyv_A Shikimate kinase, SK; t 93.2 0.036 1.2E-06 53.2 2.6 22 197-218 3-24 (184)
292 1g8p_A Magnesium-chelatase 38 93.2 0.046 1.6E-06 58.5 3.8 45 172-219 24-68 (350)
293 2yvu_A Probable adenylyl-sulfa 93.2 0.051 1.7E-06 52.2 3.7 25 195-219 12-36 (186)
294 1g41_A Heat shock protein HSLU 93.2 0.063 2.1E-06 58.8 4.7 48 171-218 14-72 (444)
295 2ze6_A Isopentenyl transferase 93.2 0.045 1.5E-06 55.6 3.4 22 197-218 2-23 (253)
296 2wsm_A Hydrogenase expression/ 93.2 0.067 2.3E-06 52.9 4.6 41 176-219 13-53 (221)
297 2if2_A Dephospho-COA kinase; a 93.1 0.041 1.4E-06 53.8 2.9 22 197-218 2-23 (204)
298 2j41_A Guanylate kinase; GMP, 93.1 0.049 1.7E-06 53.2 3.5 23 196-218 6-28 (207)
299 3tr0_A Guanylate kinase, GMP k 93.1 0.054 1.8E-06 52.9 3.7 23 196-218 7-29 (205)
300 1vma_A Cell division protein F 93.0 0.13 4.5E-06 53.6 6.6 55 178-234 81-140 (306)
301 3tau_A Guanylate kinase, GMP k 93.0 0.057 2E-06 53.0 3.7 24 195-218 7-30 (208)
302 1ye8_A Protein THEP1, hypothet 93.0 0.054 1.8E-06 51.6 3.4 22 198-219 2-23 (178)
303 1e6c_A Shikimate kinase; phosp 93.0 0.044 1.5E-06 51.8 2.8 22 197-218 3-24 (173)
304 2bbw_A Adenylate kinase 4, AK4 93.0 0.054 1.8E-06 54.8 3.6 23 196-218 27-49 (246)
305 3asz_A Uridine kinase; cytidin 93.0 0.052 1.8E-06 53.3 3.4 24 195-218 5-28 (211)
306 1jjv_A Dephospho-COA kinase; P 93.0 0.055 1.9E-06 52.9 3.6 22 197-218 3-24 (206)
307 1xjc_A MOBB protein homolog; s 93.0 0.054 1.9E-06 50.8 3.3 24 195-218 3-26 (169)
308 1zu4_A FTSY; GTPase, signal re 93.0 0.14 4.9E-06 53.7 6.9 38 195-234 104-141 (320)
309 3cm0_A Adenylate kinase; ATP-b 92.9 0.055 1.9E-06 51.9 3.4 23 196-218 4-26 (186)
310 2vhj_A Ntpase P4, P4; non- hyd 92.9 0.086 2.9E-06 54.7 4.9 35 195-234 122-156 (331)
311 3a00_A Guanylate kinase, GMP k 92.8 0.048 1.6E-06 52.4 2.9 22 197-218 2-23 (186)
312 2cdn_A Adenylate kinase; phosp 92.8 0.06 2.1E-06 52.4 3.6 24 195-218 19-42 (201)
313 3umf_A Adenylate kinase; rossm 92.8 0.065 2.2E-06 52.7 3.7 24 195-218 28-51 (217)
314 2vli_A Antibiotic resistance p 92.8 0.042 1.4E-06 52.6 2.3 23 196-218 5-27 (183)
315 2bwj_A Adenylate kinase 5; pho 92.8 0.052 1.8E-06 52.7 3.0 23 196-218 12-34 (199)
316 1cke_A CK, MSSA, protein (cyti 92.7 0.056 1.9E-06 53.8 3.2 22 197-218 6-27 (227)
317 1nn5_A Similar to deoxythymidy 92.7 0.14 4.6E-06 50.4 6.0 23 196-218 9-31 (215)
318 3p32_A Probable GTPase RV1496/ 92.7 0.12 4E-06 55.5 5.9 37 181-218 65-101 (355)
319 2pt5_A Shikimate kinase, SK; a 92.6 0.061 2.1E-06 50.6 3.2 21 198-218 2-22 (168)
320 2dhr_A FTSH; AAA+ protein, hex 92.6 0.087 3E-06 58.9 4.9 49 171-219 30-87 (499)
321 2z0h_A DTMP kinase, thymidylat 92.6 0.15 5.1E-06 49.2 6.1 21 198-218 2-22 (197)
322 3aez_A Pantothenate kinase; tr 92.5 0.073 2.5E-06 55.8 3.9 24 195-218 89-112 (312)
323 1qf9_A UMP/CMP kinase, protein 92.5 0.061 2.1E-06 51.8 3.1 23 196-218 6-28 (194)
324 3e70_C DPA, signal recognition 92.5 0.15 5.3E-06 53.6 6.4 24 195-218 128-151 (328)
325 3b9q_A Chloroplast SRP recepto 92.5 0.12 4.2E-06 53.8 5.6 40 195-237 99-138 (302)
326 3cf2_A TER ATPase, transitiona 92.4 0.15 5.3E-06 60.1 6.8 51 169-219 201-261 (806)
327 2pbr_A DTMP kinase, thymidylat 92.4 0.064 2.2E-06 51.7 3.2 21 198-218 2-22 (195)
328 2grj_A Dephospho-COA kinase; T 92.4 0.07 2.4E-06 51.5 3.3 24 195-218 11-34 (192)
329 1lvg_A Guanylate kinase, GMP k 92.4 0.062 2.1E-06 52.3 2.9 23 196-218 4-26 (198)
330 1aky_A Adenylate kinase; ATP:A 92.3 0.071 2.4E-06 52.8 3.4 24 195-218 3-26 (220)
331 1pgv_A TMD-1, tropomodulin TMD 92.3 0.067 2.3E-06 51.5 3.0 89 573-664 32-136 (197)
332 1ex7_A Guanylate kinase; subst 92.3 0.054 1.8E-06 51.9 2.3 22 197-218 2-23 (186)
333 2yhs_A FTSY, cell division pro 92.3 0.17 5.8E-06 55.9 6.5 41 195-238 292-332 (503)
334 1v5w_A DMC1, meiotic recombina 92.2 0.29 1E-05 52.0 8.3 56 195-251 121-180 (343)
335 2z43_A DNA repair and recombin 92.2 0.21 7.3E-06 52.7 7.1 56 195-251 106-165 (324)
336 1zd8_A GTP:AMP phosphotransfer 92.2 0.067 2.3E-06 53.3 3.0 24 195-218 6-29 (227)
337 2og2_A Putative signal recogni 92.1 0.17 5.9E-06 53.8 6.3 40 195-237 156-195 (359)
338 4e22_A Cytidylate kinase; P-lo 92.0 0.087 3E-06 53.4 3.7 23 196-218 27-49 (252)
339 1rj9_A FTSY, signal recognitio 92.0 0.083 2.9E-06 55.1 3.6 24 195-218 101-124 (304)
340 1tue_A Replication protein E1; 92.0 0.11 3.8E-06 50.0 4.1 38 180-219 44-81 (212)
341 1znw_A Guanylate kinase, GMP k 92.0 0.081 2.8E-06 51.8 3.3 24 195-218 19-42 (207)
342 4a74_A DNA repair and recombin 92.0 0.21 7.3E-06 49.5 6.6 43 195-237 24-70 (231)
343 2jeo_A Uridine-cytidine kinase 92.0 0.093 3.2E-06 53.0 3.9 24 195-218 24-47 (245)
344 3hr8_A Protein RECA; alpha and 92.0 0.15 5.2E-06 54.1 5.6 45 195-241 60-104 (356)
345 3dm5_A SRP54, signal recogniti 92.0 0.22 7.4E-06 54.5 6.9 24 195-218 99-122 (443)
346 2f6r_A COA synthase, bifunctio 91.9 0.087 3E-06 54.4 3.6 24 195-218 74-97 (281)
347 2wwf_A Thymidilate kinase, put 91.9 0.077 2.6E-06 52.1 3.1 23 196-218 10-32 (212)
348 2xxa_A Signal recognition part 91.9 0.14 4.8E-06 56.2 5.4 53 181-235 79-138 (433)
349 1m7g_A Adenylylsulfate kinase; 91.8 0.095 3.3E-06 51.5 3.7 24 195-218 24-47 (211)
350 1vht_A Dephospho-COA kinase; s 91.8 0.099 3.4E-06 51.6 3.7 23 196-218 4-26 (218)
351 2v54_A DTMP kinase, thymidylat 91.8 0.095 3.2E-06 51.0 3.6 23 196-218 4-26 (204)
352 3ney_A 55 kDa erythrocyte memb 91.8 0.096 3.3E-06 50.5 3.4 24 195-218 18-41 (197)
353 3k1j_A LON protease, ATP-depen 91.7 0.11 3.9E-06 60.0 4.7 43 171-218 40-82 (604)
354 1zak_A Adenylate kinase; ATP:A 91.7 0.075 2.6E-06 52.7 2.8 24 195-218 4-27 (222)
355 3bh0_A DNAB-like replicative h 91.7 0.29 9.7E-06 51.4 7.4 52 195-250 67-118 (315)
356 1htw_A HI0065; nucleotide-bind 91.7 0.11 3.9E-06 48.2 3.8 24 195-218 32-55 (158)
357 2px0_A Flagellar biosynthesis 91.7 0.087 3E-06 54.7 3.3 24 195-218 104-127 (296)
358 1u94_A RECA protein, recombina 91.7 0.13 4.6E-06 54.8 4.8 44 195-240 62-105 (356)
359 3nwj_A ATSK2; P loop, shikimat 91.7 0.077 2.6E-06 53.6 2.7 22 197-218 49-70 (250)
360 2pez_A Bifunctional 3'-phospho 91.6 0.1 3.6E-06 49.6 3.6 24 195-218 4-27 (179)
361 3end_A Light-independent proto 91.6 0.15 5.1E-06 53.4 5.1 43 195-239 40-82 (307)
362 1sq5_A Pantothenate kinase; P- 91.6 0.16 5.6E-06 53.1 5.3 24 195-218 79-102 (308)
363 1z6g_A Guanylate kinase; struc 91.6 0.089 3.1E-06 52.0 3.1 23 196-218 23-45 (218)
364 2i3b_A HCR-ntpase, human cance 91.5 0.092 3.1E-06 50.5 3.0 23 197-219 2-24 (189)
365 2zr9_A Protein RECA, recombina 91.4 0.13 4.6E-06 54.7 4.5 44 195-240 60-103 (349)
366 3kl4_A SRP54, signal recogniti 91.4 0.24 8.1E-06 54.1 6.5 24 195-218 96-119 (433)
367 1cr0_A DNA primase/helicase; R 91.4 0.23 7.8E-06 51.6 6.2 40 195-236 34-74 (296)
368 2i1q_A DNA repair and recombin 91.4 0.23 7.8E-06 52.4 6.2 56 195-251 97-166 (322)
369 3fb4_A Adenylate kinase; psych 91.3 0.099 3.4E-06 51.5 3.2 21 198-218 2-22 (216)
370 1j8m_F SRP54, signal recogniti 91.3 0.21 7.2E-06 51.8 5.7 38 196-235 98-135 (297)
371 4eaq_A DTMP kinase, thymidylat 91.2 0.22 7.5E-06 49.5 5.6 25 195-219 25-49 (229)
372 1gtv_A TMK, thymidylate kinase 91.2 0.052 1.8E-06 53.4 0.9 22 197-218 1-22 (214)
373 2w0m_A SSO2452; RECA, SSPF, un 91.2 0.14 4.9E-06 50.8 4.2 39 196-236 23-61 (235)
374 2ged_A SR-beta, signal recogni 91.1 0.13 4.6E-06 49.3 3.8 25 195-219 47-71 (193)
375 3dl0_A Adenylate kinase; phosp 91.1 0.11 3.7E-06 51.3 3.2 21 198-218 2-22 (216)
376 2ehv_A Hypothetical protein PH 91.0 0.12 4E-06 52.3 3.4 40 195-235 29-68 (251)
377 1s96_A Guanylate kinase, GMP k 91.0 0.13 4.4E-06 50.8 3.6 24 195-218 15-38 (219)
378 2f1r_A Molybdopterin-guanine d 90.9 0.07 2.4E-06 50.4 1.5 22 197-218 3-24 (171)
379 2onk_A Molybdate/tungstate ABC 90.9 0.13 4.5E-06 51.5 3.6 23 195-218 24-46 (240)
380 2v3c_C SRP54, signal recogniti 90.9 0.15 5.1E-06 56.0 4.2 25 195-219 98-122 (432)
381 1yrb_A ATP(GTP)binding protein 90.9 0.14 4.8E-06 52.1 3.9 24 195-218 13-36 (262)
382 3m6a_A ATP-dependent protease 90.9 0.12 4.2E-06 58.8 3.7 48 171-218 80-130 (543)
383 3tif_A Uncharacterized ABC tra 90.8 0.17 5.7E-06 50.6 4.3 35 195-232 30-64 (235)
384 3ake_A Cytidylate kinase; CMP 90.8 0.12 4.1E-06 50.5 3.2 21 198-218 4-24 (208)
385 1np6_A Molybdopterin-guanine d 90.8 0.13 4.5E-06 48.6 3.3 24 195-218 5-28 (174)
386 2dr3_A UPF0273 protein PH0284; 90.6 0.17 6E-06 50.8 4.3 41 195-237 22-62 (247)
387 1ak2_A Adenylate kinase isoenz 90.6 0.14 4.9E-06 51.1 3.6 24 195-218 15-38 (233)
388 3d3q_A TRNA delta(2)-isopenten 90.6 0.13 4.6E-06 54.0 3.3 22 197-218 8-29 (340)
389 1b0u_A Histidine permease; ABC 90.5 0.18 6.3E-06 51.2 4.3 35 195-232 31-65 (262)
390 1r6b_X CLPA protein; AAA+, N-t 90.5 0.18 6E-06 60.3 4.8 47 172-218 458-510 (758)
391 3gfo_A Cobalt import ATP-bindi 90.5 0.19 6.4E-06 51.5 4.3 23 196-218 34-56 (275)
392 1svm_A Large T antigen; AAA+ f 90.5 0.26 8.9E-06 52.9 5.6 36 182-218 156-191 (377)
393 4g1u_C Hemin import ATP-bindin 90.5 0.21 7.2E-06 50.9 4.7 35 195-232 36-70 (266)
394 3lda_A DNA repair protein RAD5 90.5 0.4 1.4E-05 51.9 7.1 57 195-252 177-237 (400)
395 1pzn_A RAD51, DNA repair and r 90.4 0.24 8.1E-06 52.8 5.3 44 195-238 130-177 (349)
396 3r20_A Cytidylate kinase; stru 90.4 0.14 4.9E-06 50.8 3.3 23 196-218 9-31 (233)
397 2xb4_A Adenylate kinase; ATP-b 90.4 0.14 4.8E-06 50.8 3.2 21 198-218 2-22 (223)
398 1nlf_A Regulatory protein REPA 90.4 0.18 6.2E-06 51.9 4.2 23 196-218 30-52 (279)
399 3be4_A Adenylate kinase; malar 90.3 0.13 4.5E-06 50.7 2.9 23 196-218 5-27 (217)
400 1mv5_A LMRA, multidrug resista 90.2 0.23 7.7E-06 50.0 4.7 35 195-232 27-61 (243)
401 1ls1_A Signal recognition part 90.2 0.23 7.8E-06 51.6 4.8 37 196-234 98-134 (295)
402 2pcj_A ABC transporter, lipopr 90.2 0.14 4.7E-06 50.8 3.0 23 196-218 30-52 (224)
403 3lnc_A Guanylate kinase, GMP k 90.2 0.1 3.5E-06 52.1 2.1 23 196-218 27-50 (231)
404 2afh_E Nitrogenase iron protei 90.2 0.21 7.1E-06 51.8 4.5 40 196-237 2-41 (289)
405 1cp2_A CP2, nitrogenase iron p 90.2 0.21 7.1E-06 51.1 4.4 39 197-237 2-40 (269)
406 1e4v_A Adenylate kinase; trans 90.1 0.14 4.7E-06 50.4 2.9 21 198-218 2-22 (214)
407 2zej_A Dardarin, leucine-rich 90.0 0.16 5.4E-06 48.5 3.1 22 198-219 4-25 (184)
408 1ltq_A Polynucleotide kinase; 90.0 0.16 5.5E-06 52.9 3.5 22 197-218 3-24 (301)
409 2cbz_A Multidrug resistance-as 90.0 0.16 5.4E-06 50.9 3.2 24 195-218 30-53 (237)
410 3b85_A Phosphate starvation-in 90.0 0.13 4.5E-06 50.3 2.5 22 197-218 23-44 (208)
411 2ff7_A Alpha-hemolysin translo 90.0 0.22 7.5E-06 50.2 4.3 34 196-232 35-68 (247)
412 1q3t_A Cytidylate kinase; nucl 89.9 0.17 5.9E-06 50.6 3.5 24 195-218 15-38 (236)
413 4dzz_A Plasmid partitioning pr 89.9 0.29 1E-05 47.5 5.1 43 197-241 2-45 (206)
414 3a8t_A Adenylate isopentenyltr 89.9 0.2 6.8E-06 52.5 3.9 24 195-218 39-62 (339)
415 3crm_A TRNA delta(2)-isopenten 89.9 0.17 5.8E-06 52.8 3.4 22 197-218 6-27 (323)
416 2wji_A Ferrous iron transport 89.8 0.2 6.7E-06 46.8 3.6 23 197-219 4-26 (165)
417 3zvl_A Bifunctional polynucleo 89.8 0.18 6E-06 55.4 3.7 25 195-219 257-281 (416)
418 1vpl_A ABC transporter, ATP-bi 89.8 0.23 8E-06 50.2 4.3 35 195-232 40-74 (256)
419 1sgw_A Putative ABC transporte 89.8 0.15 5.2E-06 50.0 2.8 23 196-218 35-57 (214)
420 4edh_A DTMP kinase, thymidylat 89.7 0.5 1.7E-05 46.3 6.5 24 196-219 6-29 (213)
421 2ixe_A Antigen peptide transpo 89.7 0.23 7.9E-06 50.8 4.3 35 195-232 44-78 (271)
422 2olj_A Amino acid ABC transpor 89.7 0.17 6E-06 51.4 3.3 24 195-218 49-72 (263)
423 3sr0_A Adenylate kinase; phosp 89.6 0.18 6E-06 49.2 3.2 21 198-218 2-22 (206)
424 1xp8_A RECA protein, recombina 89.6 0.23 7.8E-06 53.1 4.3 45 195-241 73-117 (366)
425 1ji0_A ABC transporter; ATP bi 89.6 0.18 6E-06 50.7 3.2 23 196-218 32-54 (240)
426 2pze_A Cystic fibrosis transme 89.6 0.18 6.2E-06 50.2 3.3 23 196-218 34-56 (229)
427 2d2e_A SUFC protein; ABC-ATPas 89.5 0.19 6.3E-06 50.9 3.3 23 196-218 29-51 (250)
428 1oix_A RAS-related protein RAB 89.5 0.17 5.8E-06 48.7 2.9 24 196-219 29-52 (191)
429 2dyk_A GTP-binding protein; GT 89.5 0.21 7.3E-06 46.0 3.6 23 197-219 2-24 (161)
430 2r8r_A Sensor protein; KDPD, P 89.5 0.31 1E-05 47.8 4.7 37 198-236 8-44 (228)
431 2j37_W Signal recognition part 89.5 0.32 1.1E-05 54.3 5.4 24 195-218 100-123 (504)
432 1g6h_A High-affinity branched- 89.4 0.18 6.2E-06 51.2 3.2 23 196-218 33-55 (257)
433 3cwq_A Para family chromosome 89.4 0.41 1.4E-05 46.8 5.7 41 198-241 2-43 (209)
434 2yz2_A Putative ABC transporte 89.4 0.25 8.7E-06 50.3 4.3 24 195-218 32-55 (266)
435 3io5_A Recombination and repai 89.2 0.32 1.1E-05 50.2 4.9 50 198-254 30-81 (333)
436 2zu0_C Probable ATP-dependent 89.2 0.2 7E-06 51.1 3.4 24 195-218 45-68 (267)
437 2ghi_A Transport protein; mult 89.1 0.2 6.8E-06 50.9 3.2 34 195-232 45-78 (260)
438 2p67_A LAO/AO transport system 89.0 0.54 1.9E-05 49.9 6.7 24 195-218 55-78 (341)
439 2qi9_C Vitamin B12 import ATP- 89.0 0.21 7.2E-06 50.3 3.3 23 196-218 26-48 (249)
440 2f9l_A RAB11B, member RAS onco 89.0 0.19 6.6E-06 48.6 3.0 24 196-219 5-28 (199)
441 2eyu_A Twitching motility prot 88.9 0.31 1.1E-05 49.5 4.5 24 195-218 24-47 (261)
442 3exa_A TRNA delta(2)-isopenten 88.8 0.24 8.2E-06 51.2 3.6 23 196-218 3-25 (322)
443 1a7j_A Phosphoribulokinase; tr 88.8 0.12 4.2E-06 53.5 1.4 24 195-218 4-27 (290)
444 2vp4_A Deoxynucleoside kinase; 88.8 0.2 6.8E-06 49.9 2.9 24 195-218 19-42 (230)
445 2nq2_C Hypothetical ABC transp 88.7 0.22 7.5E-06 50.4 3.2 23 196-218 31-53 (253)
446 1u0j_A DNA replication protein 88.7 0.4 1.4E-05 48.3 5.1 38 180-218 89-126 (267)
447 1tq4_A IIGP1, interferon-induc 88.7 0.27 9.4E-06 53.3 4.1 35 183-218 57-91 (413)
448 2ihy_A ABC transporter, ATP-bi 88.7 0.22 7.7E-06 51.1 3.3 24 195-218 46-69 (279)
449 2lkc_A Translation initiation 88.6 0.33 1.1E-05 45.6 4.3 25 195-219 7-31 (178)
450 2wjg_A FEOB, ferrous iron tran 88.6 0.27 9.2E-06 46.8 3.6 24 196-219 7-30 (188)
451 2ocp_A DGK, deoxyguanosine kin 88.5 0.24 8.1E-06 49.8 3.3 23 196-218 2-24 (241)
452 1qvr_A CLPB protein; coiled co 88.5 0.32 1.1E-05 58.9 5.0 47 172-218 558-610 (854)
453 3ld9_A DTMP kinase, thymidylat 88.5 0.59 2E-05 46.0 6.0 25 195-219 20-44 (223)
454 3foz_A TRNA delta(2)-isopenten 88.4 0.28 9.5E-06 50.6 3.7 24 195-218 9-32 (316)
455 3v9p_A DTMP kinase, thymidylat 88.4 0.43 1.5E-05 47.2 5.0 24 196-219 25-48 (227)
456 3io3_A DEHA2D07832P; chaperone 88.4 0.5 1.7E-05 50.2 5.8 45 195-241 17-63 (348)
457 2ce2_X GTPase HRAS; signaling 88.3 0.22 7.5E-06 46.1 2.7 22 198-219 5-26 (166)
458 2nzj_A GTP-binding protein REM 88.3 0.25 8.7E-06 46.3 3.2 23 197-219 5-27 (175)
459 1z2a_A RAS-related protein RAB 88.2 0.24 8.1E-06 46.1 2.9 23 197-219 6-28 (168)
460 1fzq_A ADP-ribosylation factor 88.2 0.33 1.1E-05 46.1 4.0 25 195-219 15-39 (181)
461 3con_A GTPase NRAS; structural 88.2 0.23 8E-06 47.4 2.9 23 197-219 22-44 (190)
462 3iqw_A Tail-anchored protein t 88.2 0.56 1.9E-05 49.5 6.1 45 195-241 15-59 (334)
463 4a1f_A DNAB helicase, replicat 88.2 0.74 2.5E-05 48.5 6.9 53 195-251 45-97 (338)
464 2v9p_A Replication protein E1; 88.1 0.28 9.5E-06 50.9 3.5 24 195-218 125-148 (305)
465 3hjn_A DTMP kinase, thymidylat 88.1 0.67 2.3E-05 44.7 6.1 48 198-247 2-49 (197)
466 2ffh_A Protein (FFH); SRP54, s 88.0 0.4 1.4E-05 52.2 4.9 37 196-234 98-134 (425)
467 2qm8_A GTPase/ATPase; G protei 88.0 0.49 1.7E-05 50.1 5.5 24 195-218 54-77 (337)
468 3lv8_A DTMP kinase, thymidylat 88.0 0.61 2.1E-05 46.4 5.9 37 196-233 27-63 (236)
469 3fkq_A NTRC-like two-domain pr 87.9 0.4 1.4E-05 51.6 4.9 43 194-238 141-184 (373)
470 3f9v_A Minichromosome maintena 87.9 0.17 5.7E-06 58.2 1.9 48 172-219 295-350 (595)
471 3q85_A GTP-binding protein REM 87.7 0.29 9.8E-06 45.6 3.2 22 197-218 3-24 (169)
472 2erx_A GTP-binding protein DI- 87.6 0.3 1E-05 45.5 3.2 23 197-219 4-26 (172)
473 2zts_A Putative uncharacterize 87.6 0.35 1.2E-05 48.6 3.9 41 195-236 29-69 (251)
474 3kjh_A CO dehydrogenase/acetyl 87.6 0.4 1.4E-05 48.2 4.4 41 199-241 3-43 (254)
475 2pjz_A Hypothetical protein ST 87.6 0.29 1E-05 49.7 3.3 22 197-218 31-52 (263)
476 1u8z_A RAS-related protein RAL 87.6 0.29 9.8E-06 45.4 3.0 23 197-219 5-27 (168)
477 2gj8_A MNME, tRNA modification 87.5 0.27 9.4E-06 46.2 2.9 23 197-219 5-27 (172)
478 2qmh_A HPR kinase/phosphorylas 87.4 0.31 1.1E-05 46.7 3.1 23 196-218 34-56 (205)
479 1z08_A RAS-related protein RAB 87.4 0.35 1.2E-05 45.0 3.6 24 196-219 6-29 (170)
480 4tmk_A Protein (thymidylate ki 87.4 0.73 2.5E-05 45.1 5.9 23 197-219 4-26 (213)
481 1c1y_A RAS-related protein RAP 87.3 0.29 9.9E-06 45.4 2.9 22 198-219 5-26 (167)
482 3q72_A GTP-binding protein RAD 87.3 0.26 9E-06 45.7 2.6 22 198-219 4-25 (166)
483 3ihw_A Centg3; RAS, centaurin, 87.3 0.3 1E-05 46.5 3.1 23 197-219 21-43 (184)
484 1p5z_B DCK, deoxycytidine kina 87.2 0.23 7.7E-06 50.7 2.2 24 195-218 23-46 (263)
485 1z0j_A RAB-22, RAS-related pro 87.1 0.32 1.1E-05 45.2 3.1 23 197-219 7-29 (170)
486 1m7b_A RND3/RHOE small GTP-bin 87.1 0.28 9.7E-06 46.6 2.7 24 196-219 7-30 (184)
487 3c5c_A RAS-like protein 12; GD 87.0 0.32 1.1E-05 46.4 3.1 23 197-219 22-44 (187)
488 1ek0_A Protein (GTP-binding pr 86.9 0.32 1.1E-05 45.1 3.0 22 198-219 5-26 (170)
489 1kao_A RAP2A; GTP-binding prot 86.9 0.32 1.1E-05 45.0 3.0 22 198-219 5-26 (167)
490 3tw8_B RAS-related protein RAB 86.9 0.33 1.1E-05 45.7 3.0 25 195-219 8-32 (181)
491 2axn_A 6-phosphofructo-2-kinas 86.8 0.36 1.2E-05 54.4 3.7 24 195-218 34-57 (520)
492 1nrj_B SR-beta, signal recogni 86.8 0.37 1.3E-05 47.2 3.5 25 195-219 11-35 (218)
493 4hlc_A DTMP kinase, thymidylat 86.8 1 3.6E-05 43.6 6.6 29 197-227 3-31 (205)
494 1f6b_A SAR1; gtpases, N-termin 86.7 0.45 1.5E-05 45.9 4.0 23 197-219 26-48 (198)
495 3gmt_A Adenylate kinase; ssgci 86.7 0.33 1.1E-05 47.9 3.0 22 197-218 9-30 (230)
496 1r8s_A ADP-ribosylation factor 86.7 0.33 1.1E-05 44.9 2.9 21 199-219 3-23 (164)
497 2hxs_A RAB-26, RAS-related pro 86.7 0.37 1.3E-05 45.3 3.3 23 197-219 7-29 (178)
498 2h92_A Cytidylate kinase; ross 86.7 0.31 1.1E-05 47.9 2.9 22 197-218 4-25 (219)
499 3nh6_A ATP-binding cassette SU 86.6 0.29 1E-05 50.8 2.7 24 195-218 79-102 (306)
500 3sop_A Neuronal-specific septi 86.6 0.32 1.1E-05 49.6 3.0 21 198-218 4-24 (270)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-43 Score=411.62 Aligned_cols=301 Identities=15% Similarity=0.202 Sum_probs=236.6
Q ss_pred cchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc--cccccccCCceEEEEeCCcc--cHHHHHHHHHHH
Q 044931 175 VGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD--RVDVKRHFAKRAWVRVRSEA--KVRDVLIDILQQ 250 (889)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~ 250 (889)
|||++++++|.++|........++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999876433689999999999999999999998 67899999999999999985 899999999999
Q ss_pred hhhhhc---c-c-CCCCHHHH----HHhHh-----------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccc
Q 044931 251 INDEML---V-E-ASSPEEEL----ASSLA-----------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLE 310 (889)
Q Consensus 251 l~~~~~---~-~-~~~~~~~l----~~~l~-----------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~ 310 (889)
++.... . . ...+.+.+ .+.+. +|+.+.+ .|+. .+||+||||||++. |+..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-----~~~~----~~gs~ilvTTR~~~-v~~~ 280 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-----RWAQ----ELRLRCLVTTRDVE-ISNA 280 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-----HHHH----HTTCEEEEEESBGG-GGGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-----cccc----cCCCEEEEEcCCHH-HHHH
Confidence 986532 1 1 12222333 33221 5665543 2332 26999999999999 8887
Q ss_pred cccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcccCCChhhHH
Q 044931 311 AKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSATKGRNFQKWS 390 (889)
Q Consensus 311 ~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~~w~ 390 (889)
+.....+|+|++|+.+|||+||.++|| .... + +++.+++++|+++|+|+||||+++|+.|+.+ . .+|.
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~-~~~~------~-~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~ 348 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGM-PMPV------G-EKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM 348 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSC-CCC---------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhc-CCCC------c-hhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH
Confidence 653336799999999999999999998 5321 2 6788999999999999999999999999765 1 2343
Q ss_pred HHHHhcccCCCchhhHHHHHHhhccccccchhhhh-----------hhccCCCCcccchhhhhhhhccc--CCcC-----
Q 044931 391 SVIERADVDKSDGWVSGLLALSYQELPSKLKPFFF-----------YMWFFPRAFEIPVRRLICLWCTE--PFVA----- 452 (889)
Q Consensus 391 ~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~-----------~~s~Fp~~~~i~~~~Li~~w~a~--g~i~----- 452 (889)
..+....+......+..++.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.
T Consensus 349 ~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 349 AQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C
T ss_pred HHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCC
Confidence 33333222213467899999999999999999999 999999999999 8899999 9996
Q ss_pred CCchhHHHHHHHHHHHhcceeeeccccCCCcceeecChhHHHhhhhhhhhcCe
Q 044931 453 PIDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVFSPEAAKAGF 505 (889)
Q Consensus 453 ~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~~ 505 (889)
...++.++ |+++|+++||++....+ ...+|+|||++|++|+.++.++++
T Consensus 425 ~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 425 QLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 23567776 99999999999987532 446799999999999998876643
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7e-36 Score=348.66 Aligned_cols=274 Identities=18% Similarity=0.220 Sum_probs=216.6
Q ss_pred cccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCc-eEEEEeCCcccHHHHHHHHHHHh
Q 044931 173 NLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAK-RAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d--~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC--SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC--CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34999999999999998643 5799999999999999999999998788999986 99999999999888888888865
Q ss_pred hhhhc---ccCC------CC----HHHHHHhH-----h--------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC
Q 044931 252 NDEML---VEAS------SP----EEELASSL-----A--------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN 305 (889)
Q Consensus 252 ~~~~~---~~~~------~~----~~~l~~~l-----~--------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~ 305 (889)
..... .... .+ .+.+...+ + +|+.+.|+.+ .+||+||||||++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----------~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----------NLSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----------HSSCCEEEECSCSH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----------CCCeEEEEeccChH
Confidence 44321 0000 01 12333333 1 6666666543 24899999999999
Q ss_pred CcccccccCCCeeecc------CCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhh
Q 044931 306 NIPLEAKAAGSTLHVR------RLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLS 379 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~------~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~ 379 (889)
++..+.+. ..|+++ +|+.+|||+||++... . .. . ++..+| |+|+||||+++|+.|+
T Consensus 277 -Va~~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~g-~-~~--------e---eL~~eI---CgGLPLALkLaGs~Lr 338 (1221)
T 1vt4_I 277 -VTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLD-C-RP--------Q---DLPREV---LTTNPRRLSIIAESIR 338 (1221)
T ss_dssp -HHHHHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHHC-C-CT--------T---THHHHH---CCCCHHHHHHHHHHHH
T ss_pred -HHHhcCCC-eEEEecCccccCCcCHHHHHHHHHHHcC-C-CH--------H---HHHHHH---hCCCHHHHHHHHHHHh
Confidence 87654433 467777 9999999999999853 2 11 1 223333 9999999999999999
Q ss_pred cccCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccc-hhhhhhhccCCCCcccchhhhhhhhcccCCcCCCchhH
Q 044931 380 ATKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKL-KPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPIDTDL 458 (889)
Q Consensus 380 ~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~-k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~ 458 (889)
.+..+ ...|... ....+..+|.+||+.||+++ |+||+|||+||+++.|+.+.++.+|+++| ++.
T Consensus 339 ~k~~s-~eeW~~~--------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eed 403 (1221)
T 1vt4_I 339 DGLAT-WDNWKHV--------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSD 403 (1221)
T ss_dssp HSCSS-HHHHHHC--------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHH
T ss_pred CCCCC-HHHHhcC--------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHH
Confidence 88543 7888763 24689999999999999999 99999999999999999999999999987 245
Q ss_pred HHHHHHHHHHhcceeeeccccCCCcceeecChhHHHhh
Q 044931 459 AETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVF 496 (889)
Q Consensus 459 ~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~ 496 (889)
++.++++|+++||++.. +...+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 88999999999999873 2335799999998854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.7e-35 Score=376.37 Aligned_cols=300 Identities=18% Similarity=0.303 Sum_probs=238.0
Q ss_pred ccccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc-cccC-CceEEEEeCCcc--cHHHH
Q 044931 168 FEQEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV-KRHF-AKRAWVRVRSEA--KVRDV 243 (889)
Q Consensus 168 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~--~~~~~ 243 (889)
..+.+.||||++++++|.++|...+. ..++|+|+||||+||||||+++|++.+. ..+| +.++||++++.. +....
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~-~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNG-EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTT-SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccC-CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 34557799999999999999986654 7899999999999999999999997544 4555 578899998854 34455
Q ss_pred HHHHHHHhhhhhcc--cCCCCHHHHHHhHh----------------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC
Q 044931 244 LIDILQQINDEMLV--EASSPEEELASSLA----------------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN 305 (889)
Q Consensus 244 ~~~i~~~l~~~~~~--~~~~~~~~l~~~l~----------------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~ 305 (889)
+..++..+...... ......+.+...++ +|+.+.|+. . ++||+||||||++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~-------~---~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------F---DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT-------T---CSSCEEEEEESSTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh-------h---cCCCEEEEEcCCHH
Confidence 67777777654321 13345566655543 455444433 2 57999999999999
Q ss_pred CcccccccCCCeeeccC-CChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcccCC
Q 044931 306 NIPLEAKAAGSTLHVRR-LNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSATKGR 384 (889)
Q Consensus 306 ~v~~~~~~~~~~~~l~~-L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~ 384 (889)
++..+......+++.+ |+++||++||...++ ... +...+++++|+++|+|+||||+++|++|+.+..
T Consensus 269 -~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~-~~~---------~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~- 336 (1249)
T 3sfz_A 269 -VTDSVMGPKHVVPVESGLGREKGLEILSLFVN-MKK---------EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN- 336 (1249)
T ss_dssp -TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHT-SCS---------TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS-
T ss_pred -HHHhhcCCceEEEecCCCCHHHHHHHHHHhhC-CCh---------hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh-
Confidence 8855444447899996 999999999999986 322 445567999999999999999999999998753
Q ss_pred ChhhHHHHHHhcccC----------CCchhhHHHHHHhhccccccchhhhhhhccCCCCcccchhhhhhhhcccCCcCCC
Q 044931 385 NFQKWSSVIERADVD----------KSDGWVSGLLALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAPI 454 (889)
Q Consensus 385 ~~~~w~~~l~~l~~~----------~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~~ 454 (889)
.|...++.+... .....+..+|.+||+.||+++|+||+|||+||+++.|+.+.++.+|.++
T Consensus 337 ---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------ 407 (1249)
T 3sfz_A 337 ---RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------ 407 (1249)
T ss_dssp ---CHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------
T ss_pred ---HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------
Confidence 588777776541 1225699999999999999999999999999999999999999999775
Q ss_pred chhHHHHHHHHHHHhcceeeeccccCCCcceeecChhHHHhhhhhhhhc
Q 044931 455 DTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVFSPEAAKA 503 (889)
Q Consensus 455 ~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e 503 (889)
++.++.++++|+++||++... ++...+|+||+++|++++..+.++
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 466899999999999999654 455567999999999999987655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.8e-32 Score=318.00 Aligned_cols=292 Identities=19% Similarity=0.326 Sum_probs=222.0
Q ss_pred ccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc-cccC-CceEEEEeCCcccHHHHHHHH
Q 044931 170 QEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV-KRHF-AKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~~~~~i 247 (889)
..+.||||+.++++|.++|..... +.++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKG-EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTT-SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccC-CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 457799999999999999986543 6799999999999999999999997665 7889 57999999875 333444444
Q ss_pred ---HHHhhhhhc--ccCCCCHHHHHHhHh----------------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 248 ---LQQINDEML--VEASSPEEELASSLA----------------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 248 ---~~~l~~~~~--~~~~~~~~~l~~~l~----------------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
+..+..... .......+.+...+. +|+.+.++ . . ++|++||||||++.
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~----~---l---~~~~~ilvTsR~~~- 268 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----A---F---DSQCQILLTTRDKS- 268 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHH----T---T---CSSCEEEEEESCGG-
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHH----H---h---cCCCeEEEECCCcH-
Confidence 333332111 112334444433332 33332222 1 2 46899999999998
Q ss_pred cccccccCCCeeec---cCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhhcccC
Q 044931 307 IPLEAKAAGSTLHV---RRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLLSATKG 383 (889)
Q Consensus 307 v~~~~~~~~~~~~l---~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~ 383 (889)
++..+.+ ..+++ ++|+.+||++||...++ ... ....+.+.+|+++|+|+||||+++|+.++...
T Consensus 269 ~~~~~~~--~~~~v~~l~~L~~~ea~~L~~~~~~-~~~---------~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~- 335 (591)
T 1z6t_A 269 VTDSVMG--PKYVVPVESSLGKEKGLEILSLFVN-MKK---------ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP- 335 (591)
T ss_dssp GGTTCCS--CEEEEECCSSCCHHHHHHHHHHHHT-SCG---------GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-
T ss_pred HHHhcCC--CceEeecCCCCCHHHHHHHHHHHhC-CCc---------ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-
Confidence 7665432 45555 58999999999999987 422 33356789999999999999999999998763
Q ss_pred CChhhHHHHHHhcccC----------CCchhhHHHHHHhhccccccchhhhhhhccCCCCcccchhhhhhhhcccCCcCC
Q 044931 384 RNFQKWSSVIERADVD----------KSDGWVSGLLALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAP 453 (889)
Q Consensus 384 ~~~~~w~~~l~~l~~~----------~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~ 453 (889)
..|..+++.+... .....+..++.+||+.||++.|.||++||+||+++.|+.+.+..+|.++
T Consensus 336 ---~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----- 407 (591)
T 1z6t_A 336 ---NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----- 407 (591)
T ss_dssp ---TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----
T ss_pred ---hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----
Confidence 4688888776541 1235799999999999999999999999999999999999999999664
Q ss_pred CchhHHHHHHHHHHHhcceeeeccccCCCcceeecChhHHHhhhhhh
Q 044931 454 IDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRLPTVLYDVFSPEA 500 (889)
Q Consensus 454 ~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~~~~~~ 500 (889)
.+.+..++++|+++||++... ++...+|+||++++++++...
T Consensus 408 --~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 --TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp --HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 345789999999999998653 344567999999999998773
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.5e-26 Score=271.12 Aligned_cols=133 Identities=20% Similarity=0.128 Sum_probs=94.0
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..++++.+..+......+..+.++++|++|++++|.+.. ..+..| . ++++|++|+|++|.+..+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------i~~~~~-~-~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET------------IEDKAW-H-GLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------------ECTTTT-T-TCTTCCEEECTTCCCCCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc------------cCHHHh-h-chhhcCEeECCCCccccc
Confidence 34567777777555555445567778888888888776642 333444 4 777788888888877777
Q ss_pred ChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcc--cCchhhhhcccccccccccccC
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLR--FLPDSIWKAKKLQHLYLNWIHS 666 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~ 666 (889)
++..|+++++|++|+|++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++++|..
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 5547777888888888887777665 56777778888888777776 3677777777777777777653
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=4e-26 Score=270.60 Aligned_cols=330 Identities=12% Similarity=0.096 Sum_probs=256.1
Q ss_pred ccceeeeeeeeCCCCCc-----------------CCCccc--cccccceeEeecccccCCchhHHHHHHhhhhhhcccCC
Q 044931 521 QFAVRRLATYLGVSTNF-----------------IPSEWS--WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRG 581 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~~-----------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (889)
..+.+.+.+..+..... .|..+. ++++|++|.+++|.+.+ .++..+ .
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~------------~~p~~l-~- 270 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------------KLPTFL-K- 270 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS------------SCCTTT-T-
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc------------cChHHH-h-
Confidence 34678888885555442 677777 89999999999998754 233334 4
Q ss_pred CceeeeEEEecCcc-cCC--CChHHhccc------cCCcEEeCCCCCCccccc--ccCCCCCCcEEeecCCCcc-cCchh
Q 044931 582 GFVLLTVLDLEGVY-KLK--LSDDVIGKL------LNLRYLGLRSTFIDSLPK--SVGILPRLETLDVKHTKLR-FLPDS 649 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~-i~~--l~~~~i~~l------~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~-~lp~~ 649 (889)
++++|++|++++|. ++. +|. .++++ ++|++|+|++|.++.+|. .++++++|++|++++|.++ .+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 89999999999998 875 666 78877 899999999999999998 8999999999999999998 899 8
Q ss_pred hhhcccccccccccccCCCCCCCcccccc-cccccccccccCCCccccCCCCCC--CCCeeecccCch-hhHHHHHh---
Q 044931 650 IWKAKKLQHLYLNWIHSPIDGLSLSSLNN-LQTLWGLSIESYTPFRQSDSTKWP--RLIKLGVKCDSQ-MAIEFIIN--- 722 (889)
Q Consensus 650 i~~L~~L~~L~l~~~~~~~~~~~i~~l~~-L~~L~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~-~~l~~~l~--- 722 (889)
+.++++|++|++++|....+|..++.+++ |+.|. +..+... ..+..+..++ +|+.|+++++.. ...+..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~-Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS-FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE-CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEE-ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 89999999999999887788888888888 88883 3333323 3444555544 899999998876 54555555
Q ss_pred ----hhcccccccceecccCC------cccccccccccccc-ccccccccccccCC-------CccEEEeeccCCCCCCc
Q 044931 723 ----LLVCARTDGLVEIEYGE------ARVTTLQELYLRGS-IHSFFDYGIEWNYP-------NLKILTLSMSRLVYDPM 784 (889)
Q Consensus 723 ----~l~~L~~L~l~~~~l~~------~~~~~L~~L~l~~~-~~~~p~~~~~~~~~-------~L~~L~L~~~~l~~~~~ 784 (889)
.+.+|+.|+++++.+.. ..+++|+.|+++++ +..+|. +...... +|+.|+|++|.+. ..+
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK-NSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS-SSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH-HHhccccccccccCCccEEECcCCcCC-ccC
Confidence 66788899888774333 24688999999874 466776 3332212 8999999999987 455
Q ss_pred hhhh--cCCCCCeEEeecCccCCCcceeCCCCCCcccEEEcc------ccCCCcceecccCcccccceeecccccCCCCC
Q 044931 785 PLLE--ELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLW------NLFSLEEWTVEKGAMPRLRELEIRSCNNLKPP 856 (889)
Q Consensus 785 ~~l~--~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~ 856 (889)
..+. .+++|+.|+|++|.+.+ ++..+..+++|+.|+++ +|.....+|..++.+++|+.|++++ |+++ .
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~-~ 580 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS-NDIR-K 580 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS-SCCC-B
T ss_pred hhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC-CcCC-c
Confidence 6665 89999999999888865 56677789999999995 4555667888888999999999998 6776 8
Q ss_pred CCcchhhhhcccceEEeccCc
Q 044931 857 QPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 857 lp~~l~~l~~~L~~L~l~~cp 877 (889)
+|..+. + +|+.|+++++|
T Consensus 581 ip~~~~--~-~L~~L~Ls~N~ 598 (636)
T 4eco_A 581 VNEKIT--P-NISVLDIKDNP 598 (636)
T ss_dssp CCSCCC--T-TCCEEECCSCT
T ss_pred cCHhHh--C-cCCEEECcCCC
Confidence 998765 6 99999999985
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.6e-26 Score=278.71 Aligned_cols=335 Identities=19% Similarity=0.102 Sum_probs=192.5
Q ss_pred cceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccC-CCC
Q 044931 522 FAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKL-KLS 600 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~l~ 600 (889)
...+++.+..+......+..+..+++|++|++.+|.+.+. .....+ . .+++|++|++++|.+. .+|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------ip~~~l-~-~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-----------LPMDTL-L-KMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-----------CCHHHH-T-TCTTCCEEECCSSEEEECCC
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-----------CCHHHH-h-cCCCCCEEeCcCCccCcccc
Confidence 3455555554443333455566666666666666655321 111222 3 6666666666666665 444
Q ss_pred hHHhcccc-CCcEEeCCCCCCc-ccccccCC--CCCCcEEeecCCCcc-cCchhhhhcccccccccccccCC-CCCCCcc
Q 044931 601 DDVIGKLL-NLRYLGLRSTFID-SLPKSVGI--LPRLETLDVKHTKLR-FLPDSIWKAKKLQHLYLNWIHSP-IDGLSLS 674 (889)
Q Consensus 601 ~~~i~~l~-~Lr~L~L~~~~i~-~lp~~i~~--L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~-~~~~~i~ 674 (889)
. .+.++. +|++|+|++|.+. .+|..++. +++|++|++++|.++ .+|..+.++++|++|++++|... ..|..++
T Consensus 361 ~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 361 E-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp T-THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred H-HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 4 566655 6666666666554 44555544 556666666666555 45666666666666666666532 4555566
Q ss_pred cccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccC----C--cccccccc
Q 044931 675 SLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYG----E--ARVTTLQE 747 (889)
Q Consensus 675 ~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~----~--~~~~~L~~ 747 (889)
.+++|+.|. +..+...+..+..+..+++|+.|++.++.. ..++..+..+++|+.|+++++.+. . ..+++|+.
T Consensus 440 ~l~~L~~L~-L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 440 SLSKLRDLK-LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GCTTCCEEE-CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCCCCEEE-CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 666666552 222332334445555666666666666654 444555566666666666655222 1 34556666
Q ss_pred ccccccc--cccccccccccCCCccEEEeeccCCCCCCchh---------------------------------------
Q 044931 748 LYLRGSI--HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPL--------------------------------------- 786 (889)
Q Consensus 748 L~l~~~~--~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~--------------------------------------- 786 (889)
|+++++. ..+|. .+..+ ++|+.|++++|.+.+..+..
T Consensus 519 L~L~~N~l~~~~p~-~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 519 LKLSNNSFSGNIPA-ELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp EECCSSCCEEECCG-GGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred EECCCCcccCcCCH-HHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 6666532 23454 55544 66666666666554333322
Q ss_pred -------------------------------hhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecc
Q 044931 787 -------------------------------LEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVE 835 (889)
Q Consensus 787 -------------------------------l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 835 (889)
++.+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|.....+|..
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 2234566666666666554 34455666677777777777655566666
Q ss_pred cCcccccceeecccccCCCCCCCcchhhhhcccceEEeccC
Q 044931 836 KGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNM 876 (889)
Q Consensus 836 ~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~c 876 (889)
++.+++|+.|++++ |+++|.+|..+..++ +|+.|+++++
T Consensus 676 l~~L~~L~~LdLs~-N~l~g~ip~~l~~l~-~L~~L~ls~N 714 (768)
T 3rgz_A 676 VGDLRGLNILDLSS-NKLDGRIPQAMSALT-MLTEIDLSNN 714 (768)
T ss_dssp GGGCTTCCEEECCS-SCCEECCCGGGGGCC-CCSEEECCSS
T ss_pred HhCCCCCCEEECCC-CcccCcCChHHhCCC-CCCEEECcCC
Confidence 77777777777776 666666777777776 7777777764
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2e-25 Score=254.77 Aligned_cols=336 Identities=18% Similarity=0.133 Sum_probs=257.3
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..++++.+..+......+..+.++++|++|++++|.+... +.+..| . .+++|++|+|++|.+..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------i~~~~~-~-~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-----------IRNNTF-R-GLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-----------ECTTTT-T-TCTTCCEEECTTCTTCEE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce-----------ECcccc-c-ccccCCEEeCCCCccCcc
Confidence 446789999987766665577789999999999999976421 334445 5 899999999999999987
Q ss_pred ChHHhccccCCcEEeCCCCCCcc-cccc--cCCCCCCcEEeecCCCcccC-chh-hhhcccccccccccccCC-CCCCCc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDS-LPKS--VGILPRLETLDVKHTKLRFL-PDS-IWKAKKLQHLYLNWIHSP-IDGLSL 673 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~-~~~~~i 673 (889)
++..|+++++|++|+|++|.++. +|.. ++++++|++|++++|.+..+ |.. +.++++|++|++++|... ..+..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 65589999999999999999985 4544 89999999999999999877 544 889999999999998744 344455
Q ss_pred ccc--cccccccccccccCCCcc----------ccCCCCCCCCCeeecccCch-hhHHHHHhhh---cccccccceeccc
Q 044931 674 SSL--NNLQTLWGLSIESYTPFR----------QSDSTKWPRLIKLGVKCDSQ-MAIEFIINLL---VCARTDGLVEIEY 737 (889)
Q Consensus 674 ~~l--~~L~~L~~~~~~~~~~~~----------~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l---~~L~~L~l~~~~l 737 (889)
..+ .+|+.| .+..+.... ...+..+++|+.|+++++.. ...+..+... .+|+.|.+.++..
T Consensus 175 ~~l~~~~L~~L---~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 175 LNFQGKHFTLL---RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp GGGTTCEEEEE---ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hcccccccccc---ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 555 344444 333221111 12244668899999999986 6666666554 7888888775410
Q ss_pred ----------------CC--cccccccccccccc-cccc-ccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEE
Q 044931 738 ----------------GE--ARVTTLQELYLRGS-IHSF-FDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILR 797 (889)
Q Consensus 738 ----------------~~--~~~~~L~~L~l~~~-~~~~-p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~ 797 (889)
.. ...++|+.|+++++ +... |. ++..+ ++|+.|++++|.+.+..+..++.+++|+.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-TTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchh-hcccC-CCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 00 12368999999874 3443 44 67766 9999999999999877778899999999999
Q ss_pred eecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCc-chhhhhcccceEEeccC
Q 044931 798 LYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQ-GLQNLTNTLKEFVLTNM 876 (889)
Q Consensus 798 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~-~l~~l~~~L~~L~l~~c 876 (889)
|++|.+.. ..+..+.++++|++|++++|......|..+..+++|+.|++++ |+++ .+|. .+..++ +|+.|+++++
T Consensus 330 Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~-~~~~~~~~~l~-~L~~L~l~~N 405 (455)
T 3v47_A 330 LSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLK-SVPDGIFDRLT-SLQKIWLHTN 405 (455)
T ss_dssp CCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCS-CCCTTTTTTCT-TCCEEECCSS
T ss_pred CCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC-Cccc-cCCHhHhccCC-cccEEEccCC
Confidence 99887744 4455678899999999999985444477889999999999999 8899 6776 458899 9999999984
Q ss_pred c
Q 044931 877 P 877 (889)
Q Consensus 877 p 877 (889)
|
T Consensus 406 ~ 406 (455)
T 3v47_A 406 P 406 (455)
T ss_dssp C
T ss_pred C
Confidence 3
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=4.1e-26 Score=270.54 Aligned_cols=281 Identities=15% Similarity=0.108 Sum_probs=181.0
Q ss_pred CceeeeEEEecCcccCC------------------CChHHhc--cccCCcEEeCCCCCCc-ccccccCCCCCCcEEeecC
Q 044931 582 GFVLLTVLDLEGVYKLK------------------LSDDVIG--KLLNLRYLGLRSTFID-SLPKSVGILPRLETLDVKH 640 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~------------------l~~~~i~--~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~ 640 (889)
++++|++|+|++|.++. +|+ .++ ++++|++|+|++|.+. .+|..++++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 88999999999999988 787 888 9999999999998765 7899999999999999999
Q ss_pred CC-cc--cCchhhhhc------ccccccccccccCCCCCC--CcccccccccccccccccCCCccccCCCCCCCCCeeec
Q 044931 641 TK-LR--FLPDSIWKA------KKLQHLYLNWIHSPIDGL--SLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGV 709 (889)
Q Consensus 641 ~~-l~--~lp~~i~~L------~~L~~L~l~~~~~~~~~~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l 709 (889)
|+ ++ .+|..++++ ++|++|++++|....+|. .++.+++|+.|. +..+...+..+ .++.+++|+.|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~-L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE-CLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEE-CCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEe-CcCCcCccchh-hhCCCCCCCEEEC
Confidence 97 88 488888887 899999999988778887 788888888873 33333232333 7777788888888
Q ss_pred ccCchhhHHHHHhhhcc-cccccceecccCC-------ccccccccccccccc--ccccccccc-------ccCCCccEE
Q 044931 710 KCDSQMAIEFIINLLVC-ARTDGLVEIEYGE-------ARVTTLQELYLRGSI--HSFFDYGIE-------WNYPNLKIL 772 (889)
Q Consensus 710 ~~~~~~~l~~~l~~l~~-L~~L~l~~~~l~~-------~~~~~L~~L~l~~~~--~~~p~~~~~-------~~~~~L~~L 772 (889)
+++....++..+..+++ |+.|+++++.+.. ..+++|+.|+++++. ...|. ++. .. ++|+.|
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~-~~L~~L 438 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKG-INVSSI 438 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCC-CCEEEE
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh-hhcccccccccC-CCCCEE
Confidence 87765444555667777 7777777652211 112356666666532 22333 333 23 566666
Q ss_pred EeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCC-C-------CCCcccEEEccccCCCcceecccC--ccccc
Q 044931 773 TLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSS-G-------GFPQLRVLKLWNLFSLEEWTVEKG--AMPRL 842 (889)
Q Consensus 773 ~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~-~-------~~~~L~~L~l~~~~~l~~~~~~~~--~lp~L 842 (889)
++++|.+...+...+..+++|+.|+|++|.+. .++... . .+++|+.|++++|. +..+|..+. .+++|
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L 515 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYL 515 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTC
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCc
Confidence 66666665333333445666666666655544 111111 1 11255555555554 334444443 45555
Q ss_pred ceeecccccCCCCCCCcchhhhhcccceEEe
Q 044931 843 RELEIRSCNNLKPPQPQGLQNLTNTLKEFVL 873 (889)
Q Consensus 843 ~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l 873 (889)
+.|++++ |+++ .+|..+.+++ +|+.|++
T Consensus 516 ~~L~Ls~-N~l~-~ip~~~~~l~-~L~~L~L 543 (636)
T 4eco_A 516 VGIDLSY-NSFS-KFPTQPLNSS-TLKGFGI 543 (636)
T ss_dssp CEEECCS-SCCS-SCCCGGGGCS-SCCEEEC
T ss_pred CEEECCC-CCCC-CcChhhhcCC-CCCEEEC
Confidence 5555555 4455 3555555555 5555555
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=9e-26 Score=271.92 Aligned_cols=331 Identities=15% Similarity=0.112 Sum_probs=250.7
Q ss_pred ccceeeeeeeeCCCCC-----------------cCCCccc--cccccceeEeecccccCCchhHHHHHHhhhhhhcccCC
Q 044931 521 QFAVRRLATYLGVSTN-----------------FIPSEWS--WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRG 581 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~-----------------~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (889)
..+.+.|.+..+.... ..|..+. .+++|++|.+++|.+.+ .++..+ .
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~------------~iP~~l-~- 512 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT------------QLPDFL-Y- 512 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC------------SCCGGG-G-
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc------------cChHHH-h-
Confidence 3467888888665554 1566666 89999999999997654 233334 4
Q ss_pred CceeeeEEEecCcc-cCC--CChHHhcccc-------CCcEEeCCCCCCccccc--ccCCCCCCcEEeecCCCcccCchh
Q 044931 582 GFVLLTVLDLEGVY-KLK--LSDDVIGKLL-------NLRYLGLRSTFIDSLPK--SVGILPRLETLDVKHTKLRFLPDS 649 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~-i~~--l~~~~i~~l~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~lp~~ 649 (889)
.+++|+.|+|++|. ++. +|. .++++. +|++|+|++|.+..+|. .++++++|++|+|++|.++.+| .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~ 590 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A 590 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C
T ss_pred CCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h
Confidence 89999999999998 775 665 777776 99999999999999998 8999999999999999988999 8
Q ss_pred hhhcccccccccccccCCCCCCCcccccc-cccccccccccCCCccccCCCCCC--CCCeeecccCch-hhHH---HHHh
Q 044931 650 IWKAKKLQHLYLNWIHSPIDGLSLSSLNN-LQTLWGLSIESYTPFRQSDSTKWP--RLIKLGVKCDSQ-MAIE---FIIN 722 (889)
Q Consensus 650 i~~L~~L~~L~l~~~~~~~~~~~i~~l~~-L~~L~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~-~~l~---~~l~ 722 (889)
+.++++|++|++++|....+|..+..+++ |+.|. +..+... ..+..+..++ +|+.|+++++.. ..++ ..+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~-Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG-FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE-CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccccchHHHhhccccCCEEE-CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 89999999999999887788888888888 88883 3333322 3444455554 488999988875 2211 1122
Q ss_pred --hhcccccccceecccCC------cccccccccccccc-ccccccccccccC-------CCccEEEeeccCCCCCCchh
Q 044931 723 --LLVCARTDGLVEIEYGE------ARVTTLQELYLRGS-IHSFFDYGIEWNY-------PNLKILTLSMSRLVYDPMPL 786 (889)
Q Consensus 723 --~l~~L~~L~l~~~~l~~------~~~~~L~~L~l~~~-~~~~p~~~~~~~~-------~~L~~L~L~~~~l~~~~~~~ 786 (889)
.+.+|+.|+++++.+.. ..+++|+.|+++++ +..+|. ++.... ++|+.|+|++|.+. ..+..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE-NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT-TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh-HHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 23478888888774332 25678999999864 466776 443321 38999999999887 55666
Q ss_pred hh--cCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccc------cCCCcceecccCcccccceeecccccCCCCCCC
Q 044931 787 LE--ELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWN------LFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQP 858 (889)
Q Consensus 787 l~--~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp 858 (889)
+. .+++|+.|+|++|.+.+ ++..+..+++|+.|+|++ |.....+|..+..+++|+.|+|++ |++. .+|
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~-N~L~-~Ip 822 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS-NDIR-KVD 822 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS-SCCC-BCC
T ss_pred hhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC-CCCC-ccC
Confidence 66 89999999999888765 566777899999999976 554566788888899999999998 6676 899
Q ss_pred cchhhhhcccceEEeccCch
Q 044931 859 QGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 859 ~~l~~l~~~L~~L~l~~cp~ 878 (889)
..+. + +|+.|+|++||-
T Consensus 823 ~~l~--~-~L~~LdLs~N~l 839 (876)
T 4ecn_A 823 EKLT--P-QLYILDIADNPN 839 (876)
T ss_dssp SCCC--S-SSCEEECCSCTT
T ss_pred Hhhc--C-CCCEEECCCCCC
Confidence 8765 5 899999999863
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=264.66 Aligned_cols=341 Identities=18% Similarity=0.098 Sum_probs=221.5
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..++++.+..+......+..+..+++|++|++++|.+.. ..+..| . .+++|++|+|++|.+..+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------------i~~~~~-~-~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------IEDGAY-Q-SLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE------------ECTTTT-T-TCTTCCEEECTTCCCCEE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc------------cCcccc-c-CchhCCEEeCcCCcCCcc
Confidence 34456777777555554445567777777777777776542 233344 4 677777777777777766
Q ss_pred ChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCccc--CchhhhhcccccccccccccCCCC-CCCccc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRF--LPDSIWKAKKLQHLYLNWIHSPID-GLSLSS 675 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~-~~~i~~ 675 (889)
++..|+++.+|++|++++|.++.+|. .++++++|++|++++|.++. +|..++++++|++|++++|..... +..++.
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 65567777777777777777776664 57777777777777776664 566777777777777766543222 122222
Q ss_pred cccc----c-----------------------cc----------------------------------------------
Q 044931 676 LNNL----Q-----------------------TL---------------------------------------------- 682 (889)
Q Consensus 676 l~~L----~-----------------------~L---------------------------------------------- 682 (889)
+++| . .|
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 2222 0 00
Q ss_pred ---------------------------------cccccccCC-CccccCC------------------------------
Q 044931 683 ---------------------------------WGLSIESYT-PFRQSDS------------------------------ 698 (889)
Q Consensus 683 ---------------------------------~~~~~~~~~-~~~~~~l------------------------------ 698 (889)
..+.+..+. ...+..+
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~ 331 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEE
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEe
Confidence 000000000 0000000
Q ss_pred ------------CCCCCCCeeecccCch-h--hHHHHHhhhcccccccceecccC-----Cccccccccccccccc-ccc
Q 044931 699 ------------TKWPRLIKLGVKCDSQ-M--AIEFIINLLVCARTDGLVEIEYG-----EARVTTLQELYLRGSI-HSF 757 (889)
Q Consensus 699 ------------~~l~~L~~L~l~~~~~-~--~l~~~l~~l~~L~~L~l~~~~l~-----~~~~~~L~~L~l~~~~-~~~ 757 (889)
..+++|+.|+++++.. . .....+..+++|+.|+++++.+. ...+++|+.|+++++. ...
T Consensus 332 l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp EESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred CcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence 3345555555555543 1 12455666777777777765221 1456788888887643 333
Q ss_pred -ccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceeccc
Q 044931 758 -FDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEK 836 (889)
Q Consensus 758 -p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 836 (889)
|...+..+ ++|+.|++++|.+....+..++.+++|+.|++++|.+....++..+..+++|+.|++++|......|..+
T Consensus 412 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 412 SEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp TTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 22134445 8999999999998877778889999999999998887654566778899999999999998544447788
Q ss_pred CcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 837 GAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 837 ~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
..+++|+.|++++ +++++..|..+.+++ +|+.|+++++|
T Consensus 491 ~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~N~ 529 (570)
T 2z63_A 491 NSLSSLQVLNMAS-NQLKSVPDGIFDRLT-SLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCS-SCCSCCCTTTTTTCT-TCCEEECCSSC
T ss_pred hcccCCCEEeCCC-CcCCCCCHHHhhccc-CCcEEEecCCc
Confidence 8999999999999 678844445688999 99999999843
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-25 Score=248.88 Aligned_cols=305 Identities=17% Similarity=0.124 Sum_probs=225.7
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID 621 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~ 621 (889)
...+++++.|.+.++.+.. .++.++ . .+++|++|++++|.+..+++..|+.+++|++|+|++|.+.
T Consensus 41 ~~~l~~l~~l~l~~~~l~~------------l~~~~~-~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRK------------LPAALL-D-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106 (390)
T ss_dssp SGGGCCCSEEEEESCEESE------------ECTHHH-H-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ccccCCceEEEecCCchhh------------CChhHh-c-ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC
Confidence 3456788888888877643 333344 4 7788888888888888777667888888888888888888
Q ss_pred ccc-cccCCCCCCcEEeecCCCcccCchhh-hhcccccccccccccCCCC-CCCcccccccccccccccccCCCccccCC
Q 044931 622 SLP-KSVGILPRLETLDVKHTKLRFLPDSI-WKAKKLQHLYLNWIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDS 698 (889)
Q Consensus 622 ~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l 698 (889)
.+| ..++++++|++|++++|.++.+|..+ .++++|++|++++|..... |..++.+++|++|. +..+.... ..+
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~---~~~ 182 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ-LSSNRLTH---VDL 182 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE-CCSSCCSB---CCG
T ss_pred cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE-CCCCcCCc---ccc
Confidence 665 45788888888888888888887764 7788888888888775444 34467777777663 22222111 135
Q ss_pred CCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC---ccccccccccccccccccccccccccCCCccEEEee
Q 044931 699 TKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE---ARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLS 775 (889)
Q Consensus 699 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~---~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~ 775 (889)
+.+++|+.|+++++.... +....+|+.|+++++.+.. ..+++|+.|+++++...-+. ++..+ ++|+.|+++
T Consensus 183 ~~l~~L~~L~l~~n~l~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l-~~L~~L~Ls 256 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLST----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNY-PGLVEVDLS 256 (390)
T ss_dssp GGCTTCSEEECCSSCCSE----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGC-TTCSEEECC
T ss_pred ccccccceeecccccccc----cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCC-CCccEEECC
Confidence 567778888887765311 1223467777777663332 34578999999875433233 77777 999999999
Q ss_pred ccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCC
Q 044931 776 MSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKP 855 (889)
Q Consensus 776 ~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~ 855 (889)
+|.+.+..+..++.+++|+.|+|++|.+.. ++.....+|+|+.|++++|. +..+|..+..+++|+.|++++ |.++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~-N~i~- 331 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDH-NSIV- 331 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCS-SCCC-
T ss_pred CCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCC-Cccc-
Confidence 999987778889999999999999887754 45556789999999999996 677887888899999999999 7788
Q ss_pred CCCcchhhhhcccceEEeccCch
Q 044931 856 PQPQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 856 ~lp~~l~~l~~~L~~L~l~~cp~ 878 (889)
.+| +..++ +|+.|+++++|-
T Consensus 332 ~~~--~~~~~-~L~~L~l~~N~~ 351 (390)
T 3o6n_A 332 TLK--LSTHH-TLKNLTLSHNDW 351 (390)
T ss_dssp CCC--CCTTC-CCSEEECCSSCE
T ss_pred eeC--chhhc-cCCEEEcCCCCc
Confidence 676 66888 999999999773
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=7.8e-26 Score=274.48 Aligned_cols=287 Identities=17% Similarity=0.108 Sum_probs=166.5
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc-ccccccCCC-CCCcEEeecCCCcc-cCchhhhhcccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID-SLPKSVGIL-PRLETLDVKHTKLR-FLPDSIWKAKKLQH 658 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L-~~L~~L~L~~~~l~-~lp~~i~~L~~L~~ 658 (889)
.+++|++|++++|.+....+ .. .+++|++|+|++|.+. .+|..+..+ ++|++|++++|.++ .+|..++++++|++
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~-~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIP-PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp TCSSCCEEECCSSCCEESCC-CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCcccCccC-cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 55555555555555443222 11 4555555555555554 455554443 55555555555544 34555555555555
Q ss_pred cccccccCC-CCCCC-cccccccccccccccccCCCccccCCCCCC-CCCeeecccCch-hhHHHHHhh--hcccccccc
Q 044931 659 LYLNWIHSP-IDGLS-LSSLNNLQTLWGLSIESYTPFRQSDSTKWP-RLIKLGVKCDSQ-MAIEFIINL--LVCARTDGL 732 (889)
Q Consensus 659 L~l~~~~~~-~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~-~~l~~~l~~--l~~L~~L~l 732 (889)
|++++|... ..|.. ++.+++|+.|. +..+...+..+..+..++ +|+.|+++++.. ...+..+.. +++|+.|.+
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~-Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLD-LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEE-CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEe-CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 555555432 33332 44444444442 222221222333344443 555555555543 222222222 445666666
Q ss_pred eeccc----CC--ccccccccccccccc--cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccC
Q 044931 733 VEIEY----GE--ARVTTLQELYLRGSI--HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYL 804 (889)
Q Consensus 733 ~~~~l----~~--~~~~~L~~L~l~~~~--~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~ 804 (889)
.++.+ .. ..+++|+.|+++++. ...|. .+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 55411 11 445667777776543 24555 56555 77777777777777777777777788888888777665
Q ss_pred CCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccC
Q 044931 805 GEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNM 876 (889)
Q Consensus 805 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~c 876 (889)
+ .++..+..+++|+.|++++|.....+|..++.+++|+.|++++ |++.+.+|..+++++ +|+.|++++|
T Consensus 480 ~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N 548 (768)
T 3rgz_A 480 G-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN-NSFSGNIPAELGDCR-SLIWLDLNTN 548 (768)
T ss_dssp S-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGGCT-TCCEEECCSS
T ss_pred C-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC-CcccCcCCHHHcCCC-CCCEEECCCC
Confidence 4 3455667788888888888876667777788888888888888 556657888888888 8888888864
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.3e-25 Score=270.42 Aligned_cols=329 Identities=14% Similarity=0.072 Sum_probs=252.5
Q ss_pred CCCccccccccceeEeecccccCC----chhH-HHHHHhhhhhhc--ccCCCceeeeEEEecCcccC-CCChHHhccccC
Q 044931 538 IPSEWSWSWHLRSYVAFDTRIQGS----PAIE-IYVFLDKMITAK--SKRGGFVLLTVLDLEGVYKL-KLSDDVIGKLLN 609 (889)
Q Consensus 538 ~~~~~~~~~~Lr~L~l~~~~~~~~----~~~~-~~~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~i~-~l~~~~i~~l~~ 609 (889)
.|..+.++++|++|++++|.+.+. .|.. ..+.....++.. | . .+++|++|+|++|.+. .+|. .|++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f-~-~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW-S-NLKDLTDVELYNCPNMTQLPD-FLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG-G-GCTTCCEEEEESCTTCCSCCG-GGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh-c-cCCCCCEEECcCCCCCccChH-HHhCCCC
Confidence 466789999999999999988641 0000 000111113333 3 4 7899999999999966 5665 9999999
Q ss_pred CcEEeCCCCC-Ccc--cccccCCCC-------CCcEEeecCCCcccCch--hhhhcccccccccccccCCCCCCCccccc
Q 044931 610 LRYLGLRSTF-IDS--LPKSVGILP-------RLETLDVKHTKLRFLPD--SIWKAKKLQHLYLNWIHSPIDGLSLSSLN 677 (889)
Q Consensus 610 Lr~L~L~~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~i~~l~ 677 (889)
|++|+|++|. ++. +|..++++. +|++|+|++|+++.+|. .++++++|++|++++|....+| .++.++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~ 595 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNV 595 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTS
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCC
Confidence 9999999997 874 888777665 99999999999999999 8999999999999999877777 888888
Q ss_pred ccccccccccccCCCccccCCCCCCC-CCeeecccCchhhHHHHHhhhc--ccccccceecccCC-----------cccc
Q 044931 678 NLQTLWGLSIESYTPFRQSDSTKWPR-LIKLGVKCDSQMAIEFIINLLV--CARTDGLVEIEYGE-----------ARVT 743 (889)
Q Consensus 678 ~L~~L~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~l~~l~--~L~~L~l~~~~l~~-----------~~~~ 743 (889)
+|+.|. +..+... ..+..+..+++ |+.|+++++....++..+..+. +|+.|+++++.+.. ..++
T Consensus 596 ~L~~L~-Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLK-LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEE-CCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEE-CcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 888873 3333333 45567889999 9999999987544444444443 49999998774322 1345
Q ss_pred cccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhh--------cCCCCCeEEeecCccCCCcceeCCC-
Q 044931 744 TLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLE--------ELAHLNILRLYRGAYLGEETTCSSG- 813 (889)
Q Consensus 744 ~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--------~L~~L~~L~L~~~~~~~~~~~~~~~- 813 (889)
+|+.|+++++ +..+|. ++...+++|+.|+|++|.+.. .+..+. +|++|+.|+|++|.+. .++..+.
T Consensus 674 ~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~ 749 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRA 749 (876)
T ss_dssp CEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGST
T ss_pred CcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc--cchHHhhh
Confidence 8999999974 577887 555334999999999999873 333322 3449999999988876 4555555
Q ss_pred -CCCcccEEEccccCCCcceecccCcccccceeeccc-----ccCCCCCCCcchhhhhcccceEEeccCch
Q 044931 814 -GFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRS-----CNNLKPPQPQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 814 -~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~-----C~~L~~~lp~~l~~l~~~L~~L~l~~cp~ 878 (889)
.+++|+.|+|++|. +..+|..++.+++|+.|+|++ ++++.+.+|..+.+++ +|+.|+|++|+-
T Consensus 750 ~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~-~L~~L~Ls~N~L 818 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDI 818 (876)
T ss_dssp TTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC
T ss_pred ccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC-CCCEEECCCCCC
Confidence 89999999999997 566888899999999999986 2556668999999999 999999999753
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.6e-25 Score=242.14 Aligned_cols=277 Identities=17% Similarity=0.146 Sum_probs=165.5
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.+++|++|++++|.+..+++ +.++++|++|++++|.++.+| .+.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEEC
Confidence 44445555555554444433 444555555555555444443 34445555555555554444443 444555555555
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC--
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE-- 739 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-- 739 (889)
++|.....+..+..+++|+.|. +..+.......+..+++|+.|+++++....+.. +..+++|+.|.+.++.+..
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~---l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLT---VTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEE---CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCcccccchhhCCCCcEEE---ecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence 4443222222333334443331 111111111124445555555555544311111 4445555555555442221
Q ss_pred --ccccccccccccccc-cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCC
Q 044931 740 --ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFP 816 (889)
Q Consensus 740 --~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~ 816 (889)
..+++|+.|+++++. ..++ .+..+ ++|+.|++++|.+.. .+.+..+++|+.|++++|.+... ..+..++
T Consensus 216 ~~~~~~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~ 287 (347)
T 4fmz_A 216 PVANMTRLNSLKIGNNKITDLS--PLANL-SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI---SVLNNLS 287 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG--GGTTC-TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCC---GGGGGCT
T ss_pred hhhcCCcCCEEEccCCccCCCc--chhcC-CCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccCCC---hhhcCCC
Confidence 356788888888753 5555 34455 999999999999864 46789999999999998877653 2467899
Q ss_pred cccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCch
Q 044931 817 QLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 817 ~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp~ 878 (889)
+|+.|++++|......+..++.+++|+.|++++ +.++ .+|. +..++ +|+.|++++|+-
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~-~~~~-~~~l~-~L~~L~l~~N~i 345 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ-NHIT-DIRP-LASLS-KMDSADFANQVI 345 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS-SSCC-CCGG-GGGCT-TCSEESSSCC--
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccC-Cccc-cccC-hhhhh-ccceeehhhhcc
Confidence 999999999986555666788899999999999 5588 5655 88999 999999999873
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.6e-24 Score=256.75 Aligned_cols=287 Identities=18% Similarity=0.124 Sum_probs=231.6
Q ss_pred eeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccC-chhhhhccccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFL-PDSIWKAKKLQHLYLNW 663 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~ 663 (889)
.|+.|++++|.+..+++..|+++++|++|++++|.++.+|..++++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 78899999999998888679999999999999999999999999999999999999999877 55789999999999999
Q ss_pred ccCC-CCC-CCcccccccccccccccccCCCcc--ccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceeccc-
Q 044931 664 IHSP-IDG-LSLSSLNNLQTLWGLSIESYTPFR--QSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEY- 737 (889)
Q Consensus 664 ~~~~-~~~-~~i~~l~~L~~L~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l- 737 (889)
|... ..| ..++.+++|+.|. +..+...... ...+..+++|+.|+++++.. ...+..+..+++|+.|++.++.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELD-LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEE-CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCcccccchhhhhccCcCCEEE-CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 8743 333 3477888888773 3333322222 55788999999999999886 55566778889999999987622
Q ss_pred -----CC-ccccccccccccccc-cccccccccccCCCccEEEeeccCCCCC---CchhhhcCCCCCeEEeecCccCCCc
Q 044931 738 -----GE-ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYD---PMPLLEELAHLNILRLYRGAYLGEE 807 (889)
Q Consensus 738 -----~~-~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~---~~~~l~~L~~L~~L~L~~~~~~~~~ 807 (889)
.. ..+++|+.|+++++. ...+..++..+ ++|+.|++++|.+.+. .+..++.+++|+.|++++|.+.+ .
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ 491 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-I 491 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-E
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-c
Confidence 11 567899999999754 44333266666 9999999999998753 23568999999999999887764 3
Q ss_pred ceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 808 TTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 808 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
.+..+..+++|+.|++++|......|..+..++.| .|++++ |++++..|..+..++ +|+.|+++++|
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~-~L~~L~l~~N~ 558 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS-NHISIILPSLLPILS-QQRTINLRQNP 558 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHHHH-TSSEEECTTCC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC-CcccccCHhhcccCC-CCCEEeCCCCC
Confidence 45567889999999999998666667788999999 999999 778845566789999 99999999954
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.9e-25 Score=259.06 Aligned_cols=304 Identities=17% Similarity=0.126 Sum_probs=226.1
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
..+++++.|.+.++.+.. +++.++ . .+++|++|+|++|.+..+++..|+.+++|++|+|++|.+..
T Consensus 48 l~l~~l~~l~l~~~~l~~------------lp~~~~-~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 113 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRK------------LPAALL-D-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113 (597)
T ss_dssp GGGCCCSEEEESSCEESE------------ECTHHH-H-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCCceEEEeeCCCCCC------------cCHHHH-c-cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC
Confidence 346777888888776643 333444 4 67788888888888887776678888888888888888877
Q ss_pred ccc-ccCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccCCCC-CCCcccccccccccccccccCCCccccCCC
Q 044931 623 LPK-SVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDST 699 (889)
Q Consensus 623 lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~ 699 (889)
+|+ .++++++|++|+|++|.++.+|.. +.++++|++|++++|..... |..++.+++|+.|. +..+.... ..++
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~N~l~~---~~~~ 189 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ-LSSNRLTH---VDLS 189 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE-CTTSCCSB---CCGG
T ss_pred CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE-CcCCCCCC---cChh
Confidence 664 467888888888888888888766 47788888888888775433 34577777777763 22222211 1355
Q ss_pred CCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC---ccccccccccccccccccccccccccCCCccEEEeec
Q 044931 700 KWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE---ARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSM 776 (889)
Q Consensus 700 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~---~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~ 776 (889)
.+++|+.|+++++.... +....+|+.|+++++.+.. ..+++|+.|+++++...-+. ++..+ ++|+.|+|++
T Consensus 190 ~l~~L~~L~l~~n~l~~----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~l~~l-~~L~~L~Ls~ 263 (597)
T 3oja_B 190 LIPSLFHANVSYNLLST----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNY-PGLVEVDLSY 263 (597)
T ss_dssp GCTTCSEEECCSSCCSE----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG-GGGGC-TTCSEEECCS
T ss_pred hhhhhhhhhcccCcccc----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh-hhccC-CCCCEEECCC
Confidence 67778888887765311 1233467777777664333 33568999999986533344 77777 9999999999
Q ss_pred cCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCC
Q 044931 777 SRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPP 856 (889)
Q Consensus 777 ~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~ 856 (889)
|.+.+..+..++.+++|+.|+|++|.+.+ ++.....+|+|+.|+|++|. +..+|..++.+++|+.|++++ |.+. .
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~-N~l~-~ 338 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDH-NSIV-T 338 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCS-SCCC-C
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCC-CCCC-C
Confidence 99988778899999999999999888765 55666789999999999997 667888888999999999999 6788 6
Q ss_pred CCcchhhhhcccceEEeccCch
Q 044931 857 QPQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 857 lp~~l~~l~~~L~~L~l~~cp~ 878 (889)
+| +..++ +|+.|+++++|-
T Consensus 339 ~~--~~~~~-~L~~L~l~~N~~ 357 (597)
T 3oja_B 339 LK--LSTHH-TLKNLTLSHNDW 357 (597)
T ss_dssp CC--CCTTC-CCSEEECCSSCE
T ss_pred cC--hhhcC-CCCEEEeeCCCC
Confidence 66 66788 999999999873
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=8.2e-25 Score=259.29 Aligned_cols=340 Identities=16% Similarity=0.083 Sum_probs=203.1
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..++++.+..+......+..+.++++|++|++++|.+.. ..+..| . .+++|++|+|++|.+..+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------~~~~~~-~-~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------------IHEDTF-Q-SQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------------ECTTTT-T-TCTTCCEEECTTCCCSEE
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce------------eChhhc-c-CccccCeeeCCCCccccc
Confidence 45678999998777766666788999999999999998753 334455 5 899999999999999877
Q ss_pred ChHHhccccCCcEEeCCCCCCccc-ccccCCCCCCcEEeecCCCcccCc-hhhhhcccccccccccccCCCC-CCCcccc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSL-PKSVGILPRLETLDVKHTKLRFLP-DSIWKAKKLQHLYLNWIHSPID-GLSLSSL 676 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~-~~~i~~l 676 (889)
++..|+++++|++|+|++|.++.+ |..++++++|++|++++|.+..++ +.+..+++|++|++++|..... |..++.+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 666899999999999999999987 578999999999999999998763 3455599999999999875544 4457777
Q ss_pred cccccccccccccCC-CccccCCCCCCCCCeeecccCc------------------------------------------
Q 044931 677 NNLQTLWGLSIESYT-PFRQSDSTKWPRLIKLGVKCDS------------------------------------------ 713 (889)
Q Consensus 677 ~~L~~L~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~------------------------------------------ 713 (889)
++|+.+ .+++..+. ...........+|+.|++.++.
T Consensus 177 ~~L~~l-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 177 QQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTCCSE-EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred ccccee-EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 777743 13332221 1122222223445555554443
Q ss_pred ----------h-hhHHHHHhhhcccccccceecc---cCC--cccccccccccccc-ccccccccccccCCCccEEEeec
Q 044931 714 ----------Q-MAIEFIINLLVCARTDGLVEIE---YGE--ARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSM 776 (889)
Q Consensus 714 ----------~-~~l~~~l~~l~~L~~L~l~~~~---l~~--~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~ 776 (889)
. ......+..+++|+.|+++++. ++. ..+++|+.|+++++ +..++...+..+ ++|+.|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCC
Confidence 2 1111223334444444444331 111 23344444444432 222211133333 4555555555
Q ss_pred cCCCCCC-chhhhcCCCCCeEEeecCccCCCcc-eeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCC
Q 044931 777 SRLVYDP-MPLLEELAHLNILRLYRGAYLGEET-TCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 777 ~~l~~~~-~~~l~~L~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~ 854 (889)
|.+.+.. ...++.+++|+.|++++|.+..... +..+..+++|+.|++++|......+..+..+++|+.|++++ ++++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~ 413 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF-TRLK 413 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT-CCEE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC-CcCC
Confidence 5443222 2224455555555555444432110 22345556666666666553333344555666666666666 4444
Q ss_pred CCCCc-chhhhhcccceEEeccCc
Q 044931 855 PPQPQ-GLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 855 ~~lp~-~l~~l~~~L~~L~l~~cp 877 (889)
+..|. .+.+++ +|+.|++++|.
T Consensus 414 ~~~~~~~~~~l~-~L~~L~l~~n~ 436 (606)
T 3t6q_A 414 VKDAQSPFQNLH-LLKVLNLSHSL 436 (606)
T ss_dssp CCTTCCTTTTCT-TCCEEECTTCC
T ss_pred CcccchhhhCcc-cCCEEECCCCc
Confidence 23333 256666 77777776653
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=251.27 Aligned_cols=131 Identities=21% Similarity=0.341 Sum_probs=81.2
Q ss_pred cccccccccccccc-cc-cccccccccCCCccEEEeeccCCCC--CCchhhhcCCCCCeEEeecCccCCCcceeCCCCC-
Q 044931 741 RVTTLQELYLRGSI-HS-FFDYGIEWNYPNLKILTLSMSRLVY--DPMPLLEELAHLNILRLYRGAYLGEETTCSSGGF- 815 (889)
Q Consensus 741 ~~~~L~~L~l~~~~-~~-~p~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~- 815 (889)
.+++|+.|+++++. .. .|. ++..+ ++|+.|++++|.+.+ ..+..++.+++|+.|++++|.+.+......+..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE-NCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTT-TCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hCCcccEEEeECCccChhhhh-hhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 34566666666532 22 344 55545 666666666666653 2234456666666666666655432221112222
Q ss_pred ---------------------CcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcc-hhhhhcccceEEe
Q 044931 816 ---------------------PQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQG-LQNLTNTLKEFVL 873 (889)
Q Consensus 816 ---------------------~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~-l~~l~~~L~~L~l 873 (889)
++|+.|++++|. +..+|..+..+++|+.|++++ |+++ .+|.. +..++ +|+.|++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~-N~l~-~l~~~~~~~l~-~L~~L~l 475 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVAS-NQLK-SVPDGIFDRLT-SLQKIWL 475 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCS-SCCC-CCCTTTTTTCT-TCCEEEC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCC-CcCC-ccCHHHhccCC-cccEEEC
Confidence 466666666665 456676666888888888888 6788 78876 77888 8888888
Q ss_pred ccCc
Q 044931 874 TNMP 877 (889)
Q Consensus 874 ~~cp 877 (889)
+++|
T Consensus 476 ~~N~ 479 (520)
T 2z7x_B 476 HTNP 479 (520)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8854
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.2e-24 Score=244.55 Aligned_cols=289 Identities=18% Similarity=0.127 Sum_probs=191.9
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.++++.|++++|.+.. ..+..| . .+++|++|+|++|.+..+++..|+++++|++|+|++|.++.+|
T Consensus 31 ~~~l~~L~L~~n~l~~------------~~~~~~-~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 31 PTETRLLDLGKNRIKT------------LNQDEF-A-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CTTCSEEECCSSCCCE------------ECTTTT-T-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCCcEEECCCCccce------------ECHhHc-c-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 3566666666666542 222333 3 6666666666666666554446666666666666666666666
Q ss_pred c-ccCCCCCCcEEeecCCCcccC-chhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCC
Q 044931 625 K-SVGILPRLETLDVKHTKLRFL-PDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWP 702 (889)
Q Consensus 625 ~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 702 (889)
. .+.++++|++|+|++|.+..+ |..+.++++|++|++++|..... ....+..++
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~ 152 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI------------------------SHRAFSGLN 152 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE------------------------CTTSSTTCT
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee------------------------ChhhccCCC
Confidence 4 356666666666666666654 33566666666666666543221 222334444
Q ss_pred CCCeeecccCch-hhHHHHHhhhcccccccceeccc-----CC-cccccccccccccc--ccccccccccccCCCccEEE
Q 044931 703 RLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEY-----GE-ARVTTLQELYLRGS--IHSFFDYGIEWNYPNLKILT 773 (889)
Q Consensus 703 ~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l-----~~-~~~~~L~~L~l~~~--~~~~p~~~~~~~~~~L~~L~ 773 (889)
+|+.|++.++.. ......+..+++|+.|++.++.+ .. ..+++|+.|+++++ ...+|. ..... .+|+.|+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~ 230 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYG-LNLTSLS 230 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTT-CCCSEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-ccccC-ccccEEE
Confidence 555555555443 33334455555555555554411 12 45778888888863 345555 44444 6999999
Q ss_pred eeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCC
Q 044931 774 LSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNL 853 (889)
Q Consensus 774 L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L 853 (889)
+++|.+...+...++.+++|+.|+|++|.+.. ..+..+.++++|+.|+|++|......+..+..+++|+.|++++ |++
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l 308 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-NQL 308 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS-SCC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC-CcC
Confidence 99999987666789999999999999887654 3334577899999999999985444467788999999999999 789
Q ss_pred CCCCCc-chhhhhcccceEEeccCc
Q 044931 854 KPPQPQ-GLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 854 ~~~lp~-~l~~l~~~L~~L~l~~cp 877 (889)
+ .+|. .+..++ +|+.|+++++|
T Consensus 309 ~-~~~~~~~~~l~-~L~~L~l~~N~ 331 (477)
T 2id5_A 309 T-TLEESVFHSVG-NLETLILDSNP 331 (477)
T ss_dssp S-CCCGGGBSCGG-GCCEEECCSSC
T ss_pred c-eeCHhHcCCCc-ccCEEEccCCC
Confidence 8 6765 467888 99999999855
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=6.2e-25 Score=260.36 Aligned_cols=336 Identities=17% Similarity=0.124 Sum_probs=189.0
Q ss_pred cceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCCh
Q 044931 522 FAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSD 601 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~ 601 (889)
...+++.+..+......+..+.++++|++|++++|.+.. ..+..+ . ++++|++|++++|.+..+++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~------------~~p~~~-~-~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS------------FSPGSF-S-GLTSLENLVAVETKLASLES 121 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC------------CCTTSS-T-TCTTCCEEECTTSCCCCSSS
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc------------cChhhc-C-CcccCCEEEccCCccccccc
Confidence 456777777555554445567777888888888777653 223344 4 77778888888887777764
Q ss_pred HHhccccCCcEEeCCCCCCc--ccccccCCCCCCcEEeecCCCcccCc-hhhhhccccc----ccccccccCC-------
Q 044931 602 DVIGKLLNLRYLGLRSTFID--SLPKSVGILPRLETLDVKHTKLRFLP-DSIWKAKKLQ----HLYLNWIHSP------- 667 (889)
Q Consensus 602 ~~i~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~----~L~l~~~~~~------- 667 (889)
..|+++.+|++|+|++|.+. .+|..++++++|++|++++|+++.++ ..+..+.+|+ .|++++|...
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~ 201 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccc
Confidence 46777778888888777776 46777777788887777777766553 2344443332 2333222111
Q ss_pred --------------------------------------------------------------------------------
Q 044931 668 -------------------------------------------------------------------------------- 667 (889)
Q Consensus 668 -------------------------------------------------------------------------------- 667 (889)
T Consensus 202 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 281 (606)
T 3vq2_A 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281 (606)
T ss_dssp TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC
T ss_pred cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc
Confidence
Q ss_pred -----------------CCCCCcccccccccc------------------cccccccCCCccccCCCCCCCCCeeecccC
Q 044931 668 -----------------IDGLSLSSLNNLQTL------------------WGLSIESYTPFRQSDSTKWPRLIKLGVKCD 712 (889)
Q Consensus 668 -----------------~~~~~i~~l~~L~~L------------------~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 712 (889)
.+| .++.+++|++| ..+.+..+.......+..+++|+.|+++++
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred ccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 111 12222222222 111111111122225667888999999888
Q ss_pred ch-hh--HHHHHhhhcccccccceecc---c-CC-ccccccccccccccc-ccccc-ccccccCCCccEEEeeccCCCCC
Q 044931 713 SQ-MA--IEFIINLLVCARTDGLVEIE---Y-GE-ARVTTLQELYLRGSI-HSFFD-YGIEWNYPNLKILTLSMSRLVYD 782 (889)
Q Consensus 713 ~~-~~--l~~~l~~l~~L~~L~l~~~~---l-~~-~~~~~L~~L~l~~~~-~~~p~-~~~~~~~~~L~~L~L~~~~l~~~ 782 (889)
.. .. .+..+..+++|+.|+++++. + .. ..+++|+.|+++++. ...+. ..+..+ ++|+.|++++|.+.+.
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTKID 439 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEECTTSCCEEC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEECcCCCCCcc
Confidence 75 22 36677888888888888651 1 12 455666666666532 22211 133333 5555555555555544
Q ss_pred CchhhhcCCCCCeEEeecCccCCCccee------------------------CCCCCCcccEEEccccCCCcceecccCc
Q 044931 783 PMPLLEELAHLNILRLYRGAYLGEETTC------------------------SSGGFPQLRVLKLWNLFSLEEWTVEKGA 838 (889)
Q Consensus 783 ~~~~l~~L~~L~~L~L~~~~~~~~~~~~------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 838 (889)
.+..++.+++|+.|++++|.+.+..++. .+.++++|++|++++|......|..++.
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 4444555555555555544443322233 3445555555555555533333455556
Q ss_pred ccccceeecccccCCCCCCCcchhhhhcccceEEecc
Q 044931 839 MPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTN 875 (889)
Q Consensus 839 lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~ 875 (889)
+++|+.|++++ |+++ .+|..+..++.+|+.|++++
T Consensus 520 l~~L~~L~l~~-N~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 520 LYSLSTLDCSF-NRIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CTTCCEEECTT-SCCC-CEESCGGGSCTTCCEEECCS
T ss_pred CCcCCEEECCC-CcCc-ccCHhHhhhcccCcEEEccC
Confidence 66666666666 4466 56666666652366666665
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.4e-24 Score=237.58 Aligned_cols=282 Identities=15% Similarity=0.113 Sum_probs=237.1
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCch-hhhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 659 (889)
.+++|++|+++++.+..+|+..+.++++|++|+|++|.+..+|. .++++++|++|++++|.++.+|. .+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 67899999999999999998678999999999999999998874 89999999999999999998865 58999999999
Q ss_pred ccccccCCCCCCC-cccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccC
Q 044931 660 YLNWIHSPIDGLS-LSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYG 738 (889)
Q Consensus 660 ~l~~~~~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~ 738 (889)
++++|....+|.. ++.+++|++|. +..+.........+..+++|+.|+++++....+ .+..+++|+.|.+.++.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLS-MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEE-CCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccccc
Confidence 9999987777766 47888888884 433443444455688999999999999875221 3567788999999887666
Q ss_pred C-ccccccccccccccc-cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCC
Q 044931 739 E-ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFP 816 (889)
Q Consensus 739 ~-~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~ 816 (889)
. ..+++|+.|+++++. ..+|. . .+++|+.|++++|.+.+ .+.++.+++|+.|++++|.+.+ ..+..+..++
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~-~---~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~ 272 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRG-P---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQ 272 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEEC-C---CCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCS
T ss_pred ccCCCCcceEEECCCCeeeeccc-c---ccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCC-cChhHccccc
Confidence 6 667799999999753 55554 2 23899999999999874 4789999999999999887755 4456678899
Q ss_pred cccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 817 QLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 817 ~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
+|+.|++++|. +..++.....+|+|+.|++++ ++++ .+|..+..++ +|+.|++++++
T Consensus 273 ~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~-n~l~-~~~~~~~~l~-~L~~L~L~~N~ 329 (390)
T 3o6n_A 273 RLERLYISNNR-LVALNLYGQPIPTLKVLDLSH-NHLL-HVERNQPQFD-RLENLYLDHNS 329 (390)
T ss_dssp SCCEEECCSSC-CCEEECSSSCCTTCCEEECCS-SCCC-CCGGGHHHHT-TCSEEECCSSC
T ss_pred cCCEEECCCCc-CcccCcccCCCCCCCEEECCC-Ccce-ecCccccccC-cCCEEECCCCc
Confidence 99999999997 677888888899999999999 6898 8999999999 99999999976
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.2e-23 Score=240.36 Aligned_cols=315 Identities=17% Similarity=0.119 Sum_probs=185.4
Q ss_pred cceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCCh
Q 044931 522 FAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSD 601 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~ 601 (889)
..+|.+.+..+.... .+.+..+++|++|++++|.+.. . +. + . .+++|++|++++|.+..+++
T Consensus 46 ~~l~~L~l~~~~i~~--l~~~~~l~~L~~L~Ls~n~l~~------------~-~~-~-~-~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD------------I-TP-L-K-NLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCC------------C-GG-G-T-TCTTCCEEECCSSCCCCCGG
T ss_pred ccccEEecCCCCCcc--CcchhhhcCCCEEECCCCccCC------------c-hh-h-h-ccccCCEEECCCCccccChh
Confidence 457777777444443 3457788889999998887753 2 22 3 4 88888999999888887776
Q ss_pred HHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCccccccccc
Q 044931 602 DVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQT 681 (889)
Q Consensus 602 ~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~ 681 (889)
++++++|++|+|++|.+..+|. +.++++|++|++++|.+..+| .+..+++|++|+++++ ....+ .++.+++|+.
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~L~~ 181 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ-VTDLK-PLANLTTLER 181 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES-CCCCG-GGTTCTTCCE
T ss_pred --hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc-ccCch-hhccCCCCCE
Confidence 8888889999998888888875 888888889988888887776 3666666666666432 11111 2444444444
Q ss_pred ccccccccCCCccccCCCCCCCCCeeecccCch-hhHH--------------------HHHhhhcccccccceecccCC-
Q 044931 682 LWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIE--------------------FIINLLVCARTDGLVEIEYGE- 739 (889)
Q Consensus 682 L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~--------------------~~l~~l~~L~~L~l~~~~l~~- 739 (889)
|. +..+.......+..+++|+.|+++++.. ...+ ..+..+++|+.|+++++.+..
T Consensus 182 L~---l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 182 LD---ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp EE---CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred EE---CcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc
Confidence 32 2211111222344445555555544442 1111 123344455555555442211
Q ss_pred ---ccccccccccccccc-cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCC
Q 044931 740 ---ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGF 815 (889)
Q Consensus 740 ---~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~ 815 (889)
..+++|+.|+++++. ..++ .+..+ ++|+.|++++|.+.+. +.++.+++|+.|++++|.+.+... ...+
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~l 330 (466)
T 1o6v_A 259 APLSGLTKLTELKLGANQISNIS--PLAGL-TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP---VSSL 330 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCCCCG--GGTTC-TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG---GGGC
T ss_pred hhhhcCCCCCEEECCCCccCccc--cccCC-CccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCchh---hccC
Confidence 334555555555432 3333 23333 6666666666665432 235666666666666665544221 4566
Q ss_pred CcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 816 PQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 816 ~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
++|+.|++++|. +..++ .+..+++|+.|++++ ++++ .++. +..++ +|+.|++++|+
T Consensus 331 ~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~-n~l~-~~~~-~~~l~-~L~~L~l~~n~ 386 (466)
T 1o6v_A 331 TKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGH-NQIS-DLTP-LANLT-RITQLGLNDQA 386 (466)
T ss_dssp TTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCS-SCCC-BCGG-GTTCT-TCCEEECCCEE
T ss_pred ccCCEeECCCCc-cCCch-hhccCCCCCEEeCCC-CccC-ccch-hhcCC-CCCEEeccCCc
Confidence 677777777665 34443 456677777777776 4566 3333 66777 77777777653
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=3.5e-24 Score=251.10 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=81.8
Q ss_pred ccccccccccccc-cc-cccccccccCCCccEEEeeccCCCCCC--chhhhcCCCCCeEEeecCccCCCcceeCC-----
Q 044931 742 VTTLQELYLRGSI-HS-FFDYGIEWNYPNLKILTLSMSRLVYDP--MPLLEELAHLNILRLYRGAYLGEETTCSS----- 812 (889)
Q Consensus 742 ~~~L~~L~l~~~~-~~-~p~~~~~~~~~~L~~L~L~~~~l~~~~--~~~l~~L~~L~~L~L~~~~~~~~~~~~~~----- 812 (889)
+++|+.|+++++. .. .|. ++..+ ++|+.|++++|.+.+.. +..++++++|+.|++++|.+.+......+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQ-GCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTT-TCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCceEEECCCCccccchhh-hhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3455566665432 22 333 44444 66666666666555322 22345566666666655554331111111
Q ss_pred ----------------CCC-CcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcc-hhhhhcccceEEec
Q 044931 813 ----------------GGF-PQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQG-LQNLTNTLKEFVLT 874 (889)
Q Consensus 813 ----------------~~~-~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~-l~~l~~~L~~L~l~ 874 (889)
..+ ++|+.|++++|. +..+|..+..+++|+.|++++ |+++ .+|.. +..++ +|+.|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~-N~l~-~l~~~~~~~l~-~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVAS-NQLK-SVPDGVFDRLT-SLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCS-SCCC-CCCTTSTTTCT-TCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCC-CCCC-CCCHHHHhcCC-CCCEEEec
Confidence 123 578888888775 667887777899999999998 8898 88887 88898 99999999
Q ss_pred cCc
Q 044931 875 NMP 877 (889)
Q Consensus 875 ~cp 877 (889)
++|
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 854
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.1e-23 Score=240.68 Aligned_cols=294 Identities=18% Similarity=0.140 Sum_probs=203.8
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
..++++++|.+.++.+.. ++.+ . .+++|++|++++|.+..+++ ++++++|++|++++|.+..
T Consensus 43 ~~l~~l~~L~l~~~~i~~-------------l~~~--~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-------------IDGV--E-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-------------CTTG--G-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred hHhccccEEecCCCCCcc-------------Ccch--h-hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc
Confidence 457899999999988753 3333 3 88999999999999998876 9999999999999999999
Q ss_pred cccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCC
Q 044931 623 LPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWP 702 (889)
Q Consensus 623 lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 702 (889)
+|. ++++++|++|++++|.++.+|. +.++++|++|++++|.....+ .++.+++|+.|.. . . .......+..++
T Consensus 105 ~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l-~--~-~~~~~~~~~~l~ 177 (466)
T 1o6v_A 105 ITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF-G--N-QVTDLKPLANLT 177 (466)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEE-E--E-SCCCCGGGTTCT
T ss_pred Chh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeec-C--C-cccCchhhccCC
Confidence 987 9999999999999999999986 899999999999998866554 4788888888743 2 2 122334488999
Q ss_pred CCCeeecccCchhhHHHHHhhhcccccccceecccCC----ccccccccccccccc-cccccccccccCCCccEEEeecc
Q 044931 703 RLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE----ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMS 777 (889)
Q Consensus 703 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~----~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~ 777 (889)
+|+.|+++++....+ ..+..+++|+.|.+.++.+.. ..+++|+.|+++++- ..++ .+..+ ++|+.|++++|
T Consensus 178 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n 253 (466)
T 1o6v_A 178 TLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANN 253 (466)
T ss_dssp TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSS
T ss_pred CCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCC
Confidence 999999999875222 236788899999998773332 446778888887643 3343 44444 77777777777
Q ss_pred CCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCC
Q 044931 778 RLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQ 857 (889)
Q Consensus 778 ~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~l 857 (889)
.+.+.. .++.+++|+.|++++|.+.+... +..+++|+.|++++|. +..++. ++.+++|+.|++++ ++++ .+
T Consensus 254 ~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~-n~l~-~~ 324 (466)
T 1o6v_A 254 QISNLA--PLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYF-NNIS-DI 324 (466)
T ss_dssp CCCCCG--GGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCS-SCCS-CC
T ss_pred ccccch--hhhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcC-CcCC-Cc
Confidence 765332 26666777777776665544221 4455556666665554 333322 34455555555555 3344 22
Q ss_pred CcchhhhhcccceEEeccC
Q 044931 858 PQGLQNLTNTLKEFVLTNM 876 (889)
Q Consensus 858 p~~l~~l~~~L~~L~l~~c 876 (889)
+. +..++ +|+.|++++|
T Consensus 325 ~~-~~~l~-~L~~L~l~~n 341 (466)
T 1o6v_A 325 SP-VSSLT-KLQRLFFYNN 341 (466)
T ss_dssp GG-GGGCT-TCCEEECCSS
T ss_pred hh-hccCc-cCCEeECCCC
Confidence 22 33444 4444444443
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.7e-24 Score=247.06 Aligned_cols=307 Identities=18% Similarity=0.116 Sum_probs=183.4
Q ss_pred cceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCCh
Q 044931 522 FAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSD 601 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~ 601 (889)
.+++++.+..+......+..+..+++|++|++++|.+.. ..+..| . .+++|++|+|++|.++.+|.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~-~-~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY------------LDISVF-K-FNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE------------EEGGGG-T-TCTTCCEEECCSSCCCEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC------------cChHHh-h-cccCCCEEecCCCceeecCc
Confidence 567778887555554434557778888888888887743 334444 4 78888888888888887776
Q ss_pred HHhccccCCcEEeCCCCCCcc--cccccCCCCCCcEEeecCCCcccCchhhhhcccc--cccccccccC---CCCCCCcc
Q 044931 602 DVIGKLLNLRYLGLRSTFIDS--LPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKL--QHLYLNWIHS---PIDGLSLS 674 (889)
Q Consensus 602 ~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L--~~L~l~~~~~---~~~~~~i~ 674 (889)
. .+++|++|+|++|.+.. +|..++++++|++|++++|.++. ..+..+++| ++|++++|.. ...|..++
T Consensus 87 -~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 -H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp -C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred -c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccccc
Confidence 3 78888888888888875 56788888888888888887764 245555565 6666666543 12222222
Q ss_pred cc--------------------------cccccc----------------------------------------------
Q 044931 675 SL--------------------------NNLQTL---------------------------------------------- 682 (889)
Q Consensus 675 ~l--------------------------~~L~~L---------------------------------------------- 682 (889)
.+ ++|+.|
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 21 111111
Q ss_pred --------cccccccC--CCccccCC-----------------------------------------------------C
Q 044931 683 --------WGLSIESY--TPFRQSDS-----------------------------------------------------T 699 (889)
Q Consensus 683 --------~~~~~~~~--~~~~~~~l-----------------------------------------------------~ 699 (889)
..+.+..+ .+..+..+ .
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 00111000 01111112 3
Q ss_pred CCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCC--------ccccccccccccccc-cc-cccccccccCCC
Q 044931 700 KWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGE--------ARVTTLQELYLRGSI-HS-FFDYGIEWNYPN 768 (889)
Q Consensus 700 ~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~--------~~~~~L~~L~l~~~~-~~-~p~~~~~~~~~~ 768 (889)
.+++|+.|+++++.. ...+..+..+++|+.|+++++.+.. ..+++|+.|+++++. .. +|...+..+ ++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-TT
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC-cc
Confidence 444555555555544 3333444455555555555442221 234555555555432 22 443112223 56
Q ss_pred ccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecc-cCcccccceeec
Q 044931 769 LKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVE-KGAMPRLRELEI 847 (889)
Q Consensus 769 L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~lp~L~~L~l 847 (889)
|+.|++++|.+++..+..+. ++|+.|+|++|.+. .++.....+++|+.|++++|. +..+|.. +..+++|+.|++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEEC
Confidence 66666666655433332222 57777777776665 344455689999999999997 6678876 888999999999
Q ss_pred ccccCCC
Q 044931 848 RSCNNLK 854 (889)
Q Consensus 848 ~~C~~L~ 854 (889)
++ |.+.
T Consensus 476 ~~-N~~~ 481 (520)
T 2z7x_B 476 HT-NPWD 481 (520)
T ss_dssp CS-SCBC
T ss_pred cC-CCCc
Confidence 99 6676
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-23 Score=246.91 Aligned_cols=282 Identities=15% Similarity=0.121 Sum_probs=239.1
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCchh-hhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 659 (889)
.+.++++|++++|.+..+|+..++++++|++|+|++|.+..+|+ .++++++|++|+|++|.++.+|+. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 67889999999999999999778999999999999999998764 899999999999999999988764 6899999999
Q ss_pred ccccccCCCCCCC-cccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccC
Q 044931 660 YLNWIHSPIDGLS-LSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYG 738 (889)
Q Consensus 660 ~l~~~~~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~ 738 (889)
++++|....+|.. ++.+++|++|. +..+......+..++.+++|+.|+++++....+ .+..+++|+.|+++++.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLS-MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEE-eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCccc
Confidence 9999987777766 48889999883 444444455566789999999999999875222 2566788999999888776
Q ss_pred C-ccccccccccccccc-cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCC
Q 044931 739 E-ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFP 816 (889)
Q Consensus 739 ~-~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~ 816 (889)
. ..+++|+.|+++++. ..+|. .+ +++|+.|+|++|.+++ ++.++.+++|+.|+|++|.+.+ ..+..++.++
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~-~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 278 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRG-PV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQ 278 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEEC-SC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCS
T ss_pred cccCCchhheeeccCCccccccc-cc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-CCHHHhcCcc
Confidence 6 677899999998753 55554 32 3799999999999874 5789999999999999888765 4456788999
Q ss_pred cccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 817 QLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 817 ~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
+|+.|+|++|. +..+|.....+|+|+.|++++ |.++ .+|..+..++ +|+.|++++|+
T Consensus 279 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~-N~l~-~i~~~~~~l~-~L~~L~L~~N~ 335 (597)
T 3oja_B 279 RLERLYISNNR-LVALNLYGQPIPTLKVLDLSH-NHLL-HVERNQPQFD-RLENLYLDHNS 335 (597)
T ss_dssp SCCEEECTTSC-CCEEECSSSCCTTCCEEECCS-SCCC-CCGGGHHHHT-TCSEEECCSSC
T ss_pred CCCEEECCCCC-CCCCCcccccCCCCcEEECCC-CCCC-ccCcccccCC-CCCEEECCCCC
Confidence 99999999987 677888888899999999999 7788 8999999999 99999999976
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=8.9e-24 Score=247.30 Aligned_cols=339 Identities=17% Similarity=0.173 Sum_probs=215.7
Q ss_pred ccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC
Q 044931 521 QFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS 600 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~ 600 (889)
+..++++.+..+......+..+..+++|++|++++|.+.. ..+..| . .+++|++|+|++|.+..++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------------~~~~~~-~-~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT------------IEGDAF-Y-SLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE------------ECTTTT-T-TCTTCCEEECTTSCCCSCC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc------------cChhhc-c-ccccCCEEECCCCccCccC
Confidence 3578899998666665556778999999999999998853 334445 5 8999999999999999999
Q ss_pred hHHhccccCCcEEeCCCCCCcc--cccccCCCCCCcEEeecCCC-cccCc-hhhhhcccccccccccccCC-CCCCCccc
Q 044931 601 DDVIGKLLNLRYLGLRSTFIDS--LPKSVGILPRLETLDVKHTK-LRFLP-DSIWKAKKLQHLYLNWIHSP-IDGLSLSS 675 (889)
Q Consensus 601 ~~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~~-~~~~~i~~ 675 (889)
+..|+++++|++|+|++|.+.. .|..++++++|++|++++|. +..+| ..+.++++|++|++++|... ..|..++.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 8679999999999999999984 46789999999999999996 77887 47899999999999988744 35667777
Q ss_pred ccccccccc---------------------cccccCC--Cc---cccCCCCCCCCCeeecccCch-hh----HHHHHhhh
Q 044931 676 LNNLQTLWG---------------------LSIESYT--PF---RQSDSTKWPRLIKLGVKCDSQ-MA----IEFIINLL 724 (889)
Q Consensus 676 l~~L~~L~~---------------------~~~~~~~--~~---~~~~l~~l~~L~~L~l~~~~~-~~----l~~~l~~l 724 (889)
+++|++|.. +++..+. +. .......+++|+.|.+.++.. .. +...+..+
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 666655521 1111110 00 111223456677777776653 22 22333455
Q ss_pred cccccccceeccc-----------CC-ccccccccccccccc-ccccc----ccccccCCCccEEEeeccCCCCCCchhh
Q 044931 725 VCARTDGLVEIEY-----------GE-ARVTTLQELYLRGSI-HSFFD----YGIEWNYPNLKILTLSMSRLVYDPMPLL 787 (889)
Q Consensus 725 ~~L~~L~l~~~~l-----------~~-~~~~~L~~L~l~~~~-~~~p~----~~~~~~~~~L~~L~L~~~~l~~~~~~~l 787 (889)
.+|+.+.+.++.+ .. ..+++|+.|.+.+.. ..... ..+...+++|+.|++++|.+...+...+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 6777777776521 11 334556666554421 11100 0001122566666666666543222223
Q ss_pred hcCCCCCeEEeecCccCCCcc--eeCCCCCCcccEEEccccCCCccee---cccCcccccceeecccccCCCCCCCcchh
Q 044931 788 EELAHLNILRLYRGAYLGEET--TCSSGGFPQLRVLKLWNLFSLEEWT---VEKGAMPRLRELEIRSCNNLKPPQPQGLQ 862 (889)
Q Consensus 788 ~~L~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~lp~L~~L~l~~C~~L~~~lp~~l~ 862 (889)
+.+++|+.|++++|.+.+..+ ....+.+++|+.|++++|. +..++ ..+..+++|+.|++++ |+++ .+|..+.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~-~lp~~~~ 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISR-NTFH-PMPDSCQ 407 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTT-CCCC-CCCSCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCC-CCCc-cCChhhc
Confidence 456666666666665544221 1224556666666666665 33332 2355566666666666 4566 5666666
Q ss_pred hhhcccceEEeccCc
Q 044931 863 NLTNTLKEFVLTNMP 877 (889)
Q Consensus 863 ~l~~~L~~L~l~~cp 877 (889)
.++ +|+.|++++|.
T Consensus 408 ~~~-~L~~L~Ls~N~ 421 (549)
T 2z81_A 408 WPE-KMRFLNLSSTG 421 (549)
T ss_dssp CCT-TCCEEECTTSC
T ss_pred ccc-cccEEECCCCC
Confidence 665 66666666543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=4.5e-23 Score=252.91 Aligned_cols=180 Identities=19% Similarity=0.102 Sum_probs=137.8
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..+++|.+..+......+..+.++++|++|++++|..... +.+..| . ++++|++|+|++|.+..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-----------i~~~~f-~-~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-----------IDKEAF-R-NLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-----------ECTTTT-S-SCTTCCEEECTTCCCCEE
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-----------cCHHHh-c-CCCCCCEEECCCCcCccc
Confidence 456789999997777666677899999999999999954321 334455 5 999999999999999987
Q ss_pred ChHHhccccCCcEEeCCCCCCcc-cccc--cCCCCCCcEEeecCCCcccCc--hhhhhcccccccccccccCC-CCCCCc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDS-LPKS--VGILPRLETLDVKHTKLRFLP--DSIWKAKKLQHLYLNWIHSP-IDGLSL 673 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~-~~~~~i 673 (889)
+++.|+++.+|++|+|++|.+.. +|.. ++++++|++|+|++|.+..++ ..++++++|++|++++|... ..+..+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 66599999999999999999985 5654 999999999999999988763 57999999999999998743 445566
Q ss_pred ccc--cccccccccccccCCCccccCCCCCCC------CCeeecccCc
Q 044931 674 SSL--NNLQTLWGLSIESYTPFRQSDSTKWPR------LIKLGVKCDS 713 (889)
Q Consensus 674 ~~l--~~L~~L~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~ 713 (889)
+.+ ++|+.|. +..+......+..++.+.+ |+.|+++++.
T Consensus 169 ~~l~~~~L~~L~-L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 169 EPLQGKTLSFFS-LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp HHHHHCSSCCCE-ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred ccccCCccceEE-CCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 666 6666663 3333333333444454444 8888888775
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=6.2e-23 Score=225.16 Aligned_cols=298 Identities=15% Similarity=0.097 Sum_probs=232.0
Q ss_pred ccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC
Q 044931 521 QFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS 600 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~ 600 (889)
...++++.+..+.... .+.+..+++|++|++++|.+.. ++. + . .+++|++|++++|.+..++
T Consensus 43 l~~L~~L~l~~~~i~~--~~~~~~~~~L~~L~l~~n~i~~-------------~~~-~-~-~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD-------------ISP-L-S-NLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp HTTCSEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCC-------------CGG-G-T-TCTTCCEEECCSSCCCCCG
T ss_pred cccccEEEEeCCcccc--chhhhhcCCccEEEccCCcccc-------------chh-h-h-cCCcCCEEEccCCcccCch
Confidence 3467888888555544 4558889999999999998753 222 3 4 9999999999999998864
Q ss_pred hHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccc
Q 044931 601 DDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQ 680 (889)
Q Consensus 601 ~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~ 680 (889)
.+.++++|++|++++|.+..+|. +..+++|++|++++|.....+..+..+++|++|++++|.....+. ++.+++|+
T Consensus 105 --~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 105 --ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLY 180 (347)
T ss_dssp --GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCS
T ss_pred --HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCC
Confidence 69999999999999999999986 999999999999999444444459999999999999987665544 66777777
Q ss_pred cccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCC----ccccccccccccccc-
Q 044931 681 TLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGE----ARVTTLQELYLRGSI- 754 (889)
Q Consensus 681 ~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~----~~~~~L~~L~l~~~~- 754 (889)
+|. +..+.......+..+++|+.|.+.++.. .... +..+++|+.|+++++.+.. ..+++|+.|+++++.
T Consensus 181 ~L~---l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 181 SLS---LNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EEE---CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEE---ccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCcc
Confidence 663 3332222333478899999999999875 2222 7788999999999874333 567899999999754
Q ss_pred cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceec
Q 044931 755 HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTV 834 (889)
Q Consensus 755 ~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 834 (889)
..++ .+..+ ++|+.|++++|.+.+. +.+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|+ +..++.
T Consensus 256 ~~~~--~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 256 SDIN--AVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CCCG--GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred CCCh--hHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCc-cccccC
Confidence 4444 56656 9999999999998753 678999999999999887755 334556789999999999998 555544
Q ss_pred ccCcccccceeecccccCCC
Q 044931 835 EKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 835 ~~~~lp~L~~L~l~~C~~L~ 854 (889)
+..+++|+.|++++ |.++
T Consensus 329 -~~~l~~L~~L~l~~-N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFAN-QVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSC-C---
T ss_pred -hhhhhccceeehhh-hccc
Confidence 78899999999999 5454
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.4e-23 Score=222.43 Aligned_cols=231 Identities=23% Similarity=0.224 Sum_probs=191.0
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
....++.|+|++|.+..+|+ .++++++|++|+|++|.+..+|..++++++|++|+|++|.++.+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCc
Q 044931 662 NWIH-SPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEA 740 (889)
Q Consensus 662 ~~~~-~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~ 740 (889)
++|. ....|..++... ....+..+++|+.|+++++
T Consensus 158 ~~n~~~~~~p~~~~~~~----------------~~~~~~~l~~L~~L~L~~n---------------------------- 193 (328)
T 4fcg_A 158 RACPELTELPEPLASTD----------------ASGEHQGLVNLQSLRLEWT---------------------------- 193 (328)
T ss_dssp EEETTCCCCCSCSEEEC-----------------CCCEEESTTCCEEEEEEE----------------------------
T ss_pred CCCCCccccChhHhhcc----------------chhhhccCCCCCEEECcCC----------------------------
Confidence 9875 344444433210 1112233444444444332
Q ss_pred cccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccE
Q 044931 741 RVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRV 820 (889)
Q Consensus 741 ~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 820 (889)
.+..+|. ++..+ ++|+.|+|++|.+.+ .++.++.+++|+.|+|++|.+.+ .++..++++++|+.
T Consensus 194 ------------~l~~lp~-~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 194 ------------GIRSLPA-SIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKR 257 (328)
T ss_dssp ------------CCCCCCG-GGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCE
T ss_pred ------------CcCcchH-hhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCE
Confidence 2345666 67767 999999999999874 56679999999999999888766 55667889999999
Q ss_pred EEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEecc
Q 044931 821 LKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTN 875 (889)
Q Consensus 821 L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~ 875 (889)
|++++|..+..+|..++.+++|+.|+|++|+.+. .+|..+.+++ +|+.+.+..
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~-~L~~l~l~~ 310 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLP-ANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-CCCGGGGGSC-TTCEEECCG
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-hccHHHhhcc-CceEEeCCH
Confidence 9999999899999999999999999999988777 9999999999 999998875
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6.4e-23 Score=232.50 Aligned_cols=295 Identities=17% Similarity=0.090 Sum_probs=164.3
Q ss_pred ccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 541 EWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 541 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
.+..+++|++|++++|.+.+ ++.+ . .+++|++|++++|.++.++ ++.+++|++|+|++|.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-------------~~~l--~-~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-------------MTGI--E-KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-------------CTTG--G-GCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCC
T ss_pred ChhHcCCCCEEEccCCCccc-------------Chhh--c-ccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCC
Confidence 34455666666666665532 1122 2 5566666666666665553 55666666666666666
Q ss_pred cccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCC
Q 044931 621 DSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTK 700 (889)
Q Consensus 621 ~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 700 (889)
+.+| ++++++|++|++++|+++.+| ++++++|++|++++|.....+ ++.+++|+.|.. ..+...+ ...++.
T Consensus 98 ~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l-~~n~~~~--~~~~~~ 168 (457)
T 3bz5_A 98 TNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC-HLNKKIT--KLDVTP 168 (457)
T ss_dssp SCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC-TTCSCCC--CCCCTT
T ss_pred ceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEEC-CCCCccc--cccccc
Confidence 6554 556666666666666666554 555666666666665543332 444555554421 1111011 113555
Q ss_pred CCCCCeeecccCchhhHHHHHhhhcccccccceecccC---Ccccccccccccccc-ccccccccccccCCCccEEEeec
Q 044931 701 WPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYG---EARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSM 776 (889)
Q Consensus 701 l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~---~~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~ 776 (889)
+++|+.|+++++....++ +..+++|+.|.+.++.+. ...+++|+.|+++++ +..+| +..+ ++|+.|++++
T Consensus 169 l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip---~~~l-~~L~~L~l~~ 242 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPL-TQLTYFDCSV 242 (457)
T ss_dssp CTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTC-TTCSEEECCS
T ss_pred CCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC---cccc-CCCCEEEeeC
Confidence 666666666665542221 445556666666554222 245677777777763 34444 3334 7788888888
Q ss_pred cCCCCCCchhhhcCC-------CCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceec--------ccCcccc
Q 044931 777 SRLVYDPMPLLEELA-------HLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTV--------EKGAMPR 841 (889)
Q Consensus 777 ~~l~~~~~~~l~~L~-------~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~lp~ 841 (889)
|.+.+.++..+.+|. +|+.|++++|...+ .++ .+.+++|+.|++++|..+..+|. .+..+++
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~-~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI-YFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC-EEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC-ccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 877665433332222 33344444443333 122 45678888888888876666553 2445677
Q ss_pred cceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 842 LRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 842 L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
|+.|++++ |+++ .+| +.+++ +|+.|+++++.
T Consensus 320 L~~L~L~~-N~l~-~l~--l~~l~-~L~~L~l~~N~ 350 (457)
T 3bz5_A 320 LVYLYLNN-TELT-ELD--VSHNT-KLKSLSCVNAH 350 (457)
T ss_dssp CCEEECTT-CCCS-CCC--CTTCT-TCSEEECCSSC
T ss_pred CCEEECCC-Cccc-ccc--cccCC-cCcEEECCCCC
Confidence 77777777 6677 454 67777 88888877644
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.4e-23 Score=239.42 Aligned_cols=315 Identities=17% Similarity=0.089 Sum_probs=238.3
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccC-CCChHHhccccCCcEEeCCCCCCccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKL-KLSDDVIGKLLNLRYLGLRSTFIDSL 623 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~l~~~~i~~l~~Lr~L~L~~~~i~~l 623 (889)
.++|++|++++|.+.. ..+..+ . .+++|++|++++|.+. .+++..|.++++|++|+|++|.+..+
T Consensus 29 ~~~l~~L~Ls~n~i~~------------~~~~~~-~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAE------------LNETSF-S-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CTTCCEEECCSSCCCE------------ECTTTT-S-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCccCEEEecCCccCc------------CChhHh-c-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 3789999999998853 334445 5 9999999999999986 56555899999999999999999866
Q ss_pred -ccccCCCCCCcEEeecCCCccc-Cchh--hhhcccccccccccccCCCC-CCC-cccccccccccccccccCCCccccC
Q 044931 624 -PKSVGILPRLETLDVKHTKLRF-LPDS--IWKAKKLQHLYLNWIHSPID-GLS-LSSLNNLQTLWGLSIESYTPFRQSD 697 (889)
Q Consensus 624 -p~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~-~~~-i~~l~~L~~L~~~~~~~~~~~~~~~ 697 (889)
|..++++++|++|++++|+++. +|.. +.++++|++|++++|..... |.. ++.+++|++|. +..+.........
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~ 173 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD-LTFNKVKSICEED 173 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE-CTTCCBSCCCTTT
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe-CCCCcccccChhh
Confidence 7889999999999999999985 4544 88999999999999986555 444 78888888883 4444434444555
Q ss_pred CCCC--CCCCeeecccCch-hh--------HHHHHhhhcccccccceecccCC---------cccccccccccccccc--
Q 044931 698 STKW--PRLIKLGVKCDSQ-MA--------IEFIINLLVCARTDGLVEIEYGE---------ARVTTLQELYLRGSIH-- 755 (889)
Q Consensus 698 l~~l--~~L~~L~l~~~~~-~~--------l~~~l~~l~~L~~L~l~~~~l~~---------~~~~~L~~L~l~~~~~-- 755 (889)
+..+ .+|+.|++.++.. .. ....+..+++|+.|+++++.+.. ...++|+.|.++++..
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 5555 6778888888763 11 11123355789999988763322 1236888888876420
Q ss_pred ------ccc---cccccc-cCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccc
Q 044931 756 ------SFF---DYGIEW-NYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWN 825 (889)
Q Consensus 756 ------~~p---~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 825 (889)
.++ ...+.. .+++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.. ..+..+.++++|+.|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCS
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCC
Confidence 010 001111 12689999999999988788889999999999999887764 3345678899999999999
Q ss_pred cCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 826 LFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 826 ~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
|......+..++.+++|+.|++++ |++++..|..+..++ +|+.|+++++.
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L~L~~N~ 382 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSY-NHIRALGDQSFLGLP-NLKELALDTNQ 382 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCS-SCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CccCCcChhHhcCcccCCEEECCC-CcccccChhhccccc-cccEEECCCCc
Confidence 975333466788999999999999 678845578899999 99999999854
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=8.2e-23 Score=245.53 Aligned_cols=264 Identities=19% Similarity=0.105 Sum_probs=171.4
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+.+++++.+..+......+..+.++++|++|++++|.+.. ..+..+ . .+++|++|+|++|.+..+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~-~-~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------------LEPELC-Q-KLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------------CCTTHH-H-HCTTCCEEECCSSCCCCC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------------cCHHHH-h-cccCcCEEECCCCccCcc
Confidence 44678889988666665545568889999999999988754 233344 4 888999999999999988
Q ss_pred ChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCc-hhhhhcccccccccccccCCCCCCC-c--c
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLP-DSIWKAKKLQHLYLNWIHSPIDGLS-L--S 674 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~-i--~ 674 (889)
|+..|+++.+|++|+|++|.+..+| ..++++++|++|++++|.+..++ ..+.++++|++|++++|.....+.. + .
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 8867999999999999999998876 57899999999999999888654 5678899999999998875544432 2 2
Q ss_pred cccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHh---hhcccccccceecccCC------ccc--
Q 044931 675 SLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIIN---LLVCARTDGLVEIEYGE------ARV-- 742 (889)
Q Consensus 675 ~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~---~l~~L~~L~l~~~~l~~------~~~-- 742 (889)
.+++|+.|. +..+......+..+..+.+|+.|.+.++.. ......+. ..++|+.|.+.++.+.. ..+
T Consensus 169 ~~~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 169 ANSSLKKLE-LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp TTCEESEEE-CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred ccccccEEE-CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 346666663 322332333444566677777777766653 22111111 23556666665542211 122
Q ss_pred ccccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEee
Q 044931 743 TTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLY 799 (889)
Q Consensus 743 ~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~ 799 (889)
++|+.|+++++ +..++..++..+ ++|+.|++++|.+.+..+..++.+++|+.|+++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred CCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 23666666653 233332244444 666666666666554444444455555555444
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=247.55 Aligned_cols=125 Identities=23% Similarity=0.147 Sum_probs=108.6
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.+++++|++++|.+.. ..+..| . ++++|++|+|++|.+..+++..|+++++|++|+|++|.++.+|
T Consensus 27 ~~~l~~L~Ls~n~l~~------------~~~~~~-~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRH------------LGSYSF-F-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp CSSCCEEECCSCCCCE------------ECTTTT-T-TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cccccEEEccCCccCc------------cChhHh-h-CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC
Confidence 3579999999998753 333344 5 9999999999999999888768999999999999999999876
Q ss_pred -cccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCC--CCCCccccccccccc
Q 044931 625 -KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPI--DGLSLSSLNNLQTLW 683 (889)
Q Consensus 625 -~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~~~i~~l~~L~~L~ 683 (889)
..++++++|++|++++|+++.+|. .++++++|++|++++|.... .|..++.+++|++|.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 689999999999999999999886 68999999999999987553 688899999999884
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.3e-22 Score=243.66 Aligned_cols=132 Identities=17% Similarity=0.075 Sum_probs=96.0
Q ss_pred cceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCCh
Q 044931 522 FAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSD 601 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~ 601 (889)
...+++.+..+......+..+..+++|++|++++|.+.. ..+..| . .+++|++|++++|.+..+++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------l~~~~~-~-~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ------------LSDKTF-A-FCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC------------CCTTTT-T-TCTTCSEEECCSSCCCCCCS
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc------------cChhhh-c-cCCCCCEEECCCCccCccCh
Confidence 456777777555555455567788888888888887753 333334 4 78888888888888887776
Q ss_pred HHhccccCCcEEeCCCCCCccc-ccccCCCCCCcEEeecCCCcccCchh-h--hhcccccccccccccCC
Q 044931 602 DVIGKLLNLRYLGLRSTFIDSL-PKSVGILPRLETLDVKHTKLRFLPDS-I--WKAKKLQHLYLNWIHSP 667 (889)
Q Consensus 602 ~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~~ 667 (889)
..|+++++|++|+|++|.+... |..++++++|++|++++|.++.++.. + ..+++|++|++++|...
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 5788888888888888887754 45677888888888888888777653 3 24577888888776533
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=248.62 Aligned_cols=308 Identities=17% Similarity=0.127 Sum_probs=220.7
Q ss_pred cccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcc-cCCCChHHhccccCCcEEeCCCCCCcc
Q 044931 544 WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVY-KLKLSDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 544 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
..++|++|++++|.+.. ..+..| . .+++|++|+|++|. +..+++..|+++++|++|+|++|.+..
T Consensus 22 lp~~l~~LdLs~N~i~~------------i~~~~~-~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT------------VTASSF-P-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp SCTTCCEEEEESCCCCE------------ECSSSC-S-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCcCEEECCCCcCCc------------cChhHC-c-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 56899999999998853 334445 5 99999999999995 446655589999999999999999996
Q ss_pred c-ccccCCCCCCcEEeecCCCccc-Cchh--hhhcccccccccccccCCCC--CCCcccccccccccccccccCCCcccc
Q 044931 623 L-PKSVGILPRLETLDVKHTKLRF-LPDS--IWKAKKLQHLYLNWIHSPID--GLSLSSLNNLQTLWGLSIESYTPFRQS 696 (889)
Q Consensus 623 l-p~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~--~~~i~~l~~L~~L~~~~~~~~~~~~~~ 696 (889)
+ |..++++++|++|+|++|.+.. +|.. +.++++|++|++++|..... +..++++++|++|. +..+........
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~-Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID-FSSNQIFLVCEH 166 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE-EESSCCCCCCSG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE-CCCCcCCeeCHH
Confidence 6 7899999999999999999885 5655 89999999999999885544 34688899998883 443433444455
Q ss_pred CCCCC--CCCCeeecccCch-hhHHHHHhhhc------ccccccceecccCC----------------------------
Q 044931 697 DSTKW--PRLIKLGVKCDSQ-MAIEFIINLLV------CARTDGLVEIEYGE---------------------------- 739 (889)
Q Consensus 697 ~l~~l--~~L~~L~l~~~~~-~~l~~~l~~l~------~L~~L~l~~~~l~~---------------------------- 739 (889)
.+..+ ++|+.|.+..+.. ...+..+..+. +|+.|+++++.+..
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 56666 7899999988764 32222222222 37777777541110
Q ss_pred ----------------cccccccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCc
Q 044931 740 ----------------ARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGA 802 (889)
Q Consensus 740 ----------------~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~ 802 (889)
..+++|+.|+++++ +..++...+..+ ++|+.|+|++|.+.+..+..++.+++|++|+|++|.
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 01256777777753 334333255555 888888888888876666778888888888888776
Q ss_pred cCCCcceeCCCCCCcccEEEccccCCCcce-ecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccC
Q 044931 803 YLGEETTCSSGGFPQLRVLKLWNLFSLEEW-TVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNM 876 (889)
Q Consensus 803 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~c 876 (889)
+.. ..+..+.++++|+.|++++|. +..+ +..+..+++|+.|++++ |.++ .++. ++ +|+.|+++++
T Consensus 326 l~~-~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~-N~l~-~i~~----~~-~L~~L~l~~N 391 (844)
T 3j0a_A 326 LGE-LYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRD-NALT-TIHF----IP-SIPDIFLSGN 391 (844)
T ss_dssp CSC-CCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEET-CCSC-CCSS----CC-SCSEEEEESC
T ss_pred CCc-cCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCC-CCCC-cccC----CC-CcchhccCCC
Confidence 644 334567778888888888886 4444 33567788888888887 6676 5543 55 6666666654
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=4.4e-23 Score=236.75 Aligned_cols=294 Identities=18% Similarity=0.104 Sum_probs=204.2
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..++.|.+..+......+..+..+++|++|++++|.+.. ..+..| . .+++|++|+|++|.+..+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~~~-~-~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA------------VEPGAF-N-NLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE------------ECTTTT-T-TCTTCCEEECCSSCCCSC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE------------eChhhh-h-CCccCCEEECCCCcCCcc
Confidence 45678999999777766666789999999999999998753 334455 5 999999999999999999
Q ss_pred ChHHhccccCCcEEeCCCCCCccc-ccccCCCCCCcEEeecCCCcccCc-hhhhhcccccccccccccCCCCCC-Ccccc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSL-PKSVGILPRLETLDVKHTKLRFLP-DSIWKAKKLQHLYLNWIHSPIDGL-SLSSL 676 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~-~i~~l 676 (889)
++..|+++++|++|+|++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.....+. .+..+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 986789999999999999999866 568999999999999999998764 578999999999999988665553 46777
Q ss_pred cccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCCcccccccccccccc-c
Q 044931 677 NNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-I 754 (889)
Q Consensus 677 ~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~ 754 (889)
++|+.|. +..+.........+..+++|+.|+++++.. ..+...... ..+|+.|+++++ +
T Consensus 176 ~~L~~L~-l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------~~~L~~L~l~~n~l 236 (477)
T 2id5_A 176 HGLIVLR-LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------------------GLNLTSLSITHCNL 236 (477)
T ss_dssp TTCCEEE-EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT------------------TCCCSEEEEESSCC
T ss_pred CCCcEEe-CCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc------------------CccccEEECcCCcc
Confidence 7877773 333333333445678888999999887653 222222222 224555555542 3
Q ss_pred cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceec
Q 044931 755 HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTV 834 (889)
Q Consensus 755 ~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 834 (889)
..+|...+..+ ++|+.|+|++|.+.......+..+++|+.|+|++|.+.. ..+..+.++++|+.|+|++|. +..++.
T Consensus 237 ~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 313 (477)
T 2id5_A 237 TAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQ-LTTLEE 313 (477)
T ss_dssp CSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSC-CSCCCG
T ss_pred cccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEECCCCc-CceeCH
Confidence 44443133333 666666666666655455556666666666666555543 223345556666666666664 334432
Q ss_pred -ccCcccccceeeccc
Q 044931 835 -EKGAMPRLRELEIRS 849 (889)
Q Consensus 835 -~~~~lp~L~~L~l~~ 849 (889)
.+..+++|+.|++++
T Consensus 314 ~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 314 SVFHSVGNLETLILDS 329 (477)
T ss_dssp GGBSCGGGCCEEECCS
T ss_pred hHcCCCcccCEEEccC
Confidence 345566666666666
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.4e-22 Score=237.10 Aligned_cols=335 Identities=16% Similarity=0.077 Sum_probs=177.8
Q ss_pred cceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC--
Q 044931 522 FAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL-- 599 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-- 599 (889)
...+++.+..+......+..+..+++|++|++++|.+... .+..+ . .+++|++|++++|.+..+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~~~~~-~-~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL------------SSSWF-G-PLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC------------CHHHH-T-TCTTCCEEECTTCCCSSSCS
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc------------CHHHh-c-cCCCCcEEECCCCcccccch
Confidence 4566777765555444445567777777777777776542 22323 3 677777777777776643
Q ss_pred ChHHhccccCCcEEeCCCCC-Ccccc-cccCCCCCCcEEeecCCCccc-Cchhhhh------------------------
Q 044931 600 SDDVIGKLLNLRYLGLRSTF-IDSLP-KSVGILPRLETLDVKHTKLRF-LPDSIWK------------------------ 652 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~-i~~lp-~~i~~L~~L~~L~L~~~~l~~-lp~~i~~------------------------ 652 (889)
+. .++++++|++|++++|. +..+| ..++++++|++|++++|.++. .|..+.+
T Consensus 116 ~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (549)
T 2z81_A 116 TS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194 (549)
T ss_dssp SC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred hh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence 34 56677777777777665 45555 356666777777776666553 3444444
Q ss_pred cccccccccccccCCCCC---CC-ccccccccccc-------------------------ccccccCCCc--------cc
Q 044931 653 AKKLQHLYLNWIHSPIDG---LS-LSSLNNLQTLW-------------------------GLSIESYTPF--------RQ 695 (889)
Q Consensus 653 L~~L~~L~l~~~~~~~~~---~~-i~~l~~L~~L~-------------------------~~~~~~~~~~--------~~ 695 (889)
+++|++|++++|.....+ .. ...+++|+.|. .+.+..+... ..
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 274 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence 556666666655433221 11 11122222221 0001000000 00
Q ss_pred cCCCCC-----------------------------CCCCeeecccCchhhHHHHH-hhhcccccccceecccC-------
Q 044931 696 SDSTKW-----------------------------PRLIKLGVKCDSQMAIEFII-NLLVCARTDGLVEIEYG------- 738 (889)
Q Consensus 696 ~~l~~l-----------------------------~~L~~L~l~~~~~~~l~~~l-~~l~~L~~L~l~~~~l~------- 738 (889)
..+..+ .+|+.|.+.++....++..+ ..+++|+.|+++++.+.
T Consensus 275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 354 (549)
T 2z81_A 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354 (549)
T ss_dssp TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccch
Confidence 001111 23333333333321222222 34555555555544111
Q ss_pred -C-cccccccccccccc-cccccc--ccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCc------
Q 044931 739 -E-ARVTTLQELYLRGS-IHSFFD--YGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEE------ 807 (889)
Q Consensus 739 -~-~~~~~L~~L~l~~~-~~~~p~--~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~------ 807 (889)
. ..+++|+.|+++++ +..++. ..+..+ ++|+.|++++|.+. ..+..++.+++|++|++++|.+....
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~ 432 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 432 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTT
T ss_pred hhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCC
Confidence 1 23445555555542 222221 022333 55555555555544 23333444445555555444332100
Q ss_pred ----------ceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 808 ----------TTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 808 ----------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
+......+++|++|++++|. +..+|. ...+++|+.|++++ |++++..|..+..++ +|+.|+++++|
T Consensus 433 L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L~l~~N~ 508 (549)
T 2z81_A 433 LEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISR-NQLKSVPDGIFDRLT-SLQKIWLHTNP 508 (549)
T ss_dssp CSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCS-SCCCCCCTTGGGGCT-TCCEEECCSSC
T ss_pred ceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCC-CccCCcCHHHHhcCc-ccCEEEecCCC
Confidence 00012478999999999997 667776 46799999999999 789844555689999 99999999865
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.6e-22 Score=236.95 Aligned_cols=326 Identities=15% Similarity=0.117 Sum_probs=221.7
Q ss_pred eeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHH
Q 044931 524 VRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDV 603 (889)
Q Consensus 524 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~ 603 (889)
.+++.+..+.... .|..+ .++|++|++++|.+.. ..+..| . .+++|++|+|++|.++.++++.
T Consensus 33 ~~~l~ls~~~L~~-ip~~~--~~~L~~L~Ls~N~i~~------------~~~~~~-~-~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDL--PPRTKALSLSQNSISE------------LRMPDI-S-FLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp CCEEECTTSCCCS-CCTTS--CTTCCEEECCSSCCCC------------CCGGGT-T-TCTTCCEEECCSCCCCEECTTT
T ss_pred CcEEEcCCCCCcc-CCCCC--CCCcCEEECCCCCccc------------cChhhh-c-cCCCccEEECCCCCCCcCCHHH
Confidence 3677777444443 34444 3899999999999864 333444 5 9999999999999999887668
Q ss_pred hccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCc--hhhhhcccccccccccccCCCCCCCccccccc--
Q 044931 604 IGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLP--DSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNL-- 679 (889)
Q Consensus 604 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L-- 679 (889)
|+++++|++|+|++|.++.+|.. .+++|++|++++|+++.+| ..++++++|++|++++|.... ..++.+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L 171 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHL 171 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCE
T ss_pred hCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhcee
Confidence 99999999999999999999977 8999999999999999765 789999999999999976543 356666666
Q ss_pred ccccccccccC--CCccccC--------------------------CCCCCCCCeeecccCch-----hhHHHHHhhhc-
Q 044931 680 QTLWGLSIESY--TPFRQSD--------------------------STKWPRLIKLGVKCDSQ-----MAIEFIINLLV- 725 (889)
Q Consensus 680 ~~L~~~~~~~~--~~~~~~~--------------------------l~~l~~L~~L~l~~~~~-----~~l~~~l~~l~- 725 (889)
++|. +..+.. ....+.. +..+++|+.|++.++.. ......+..++
T Consensus 172 ~~L~-L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 172 SCIL-LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEE-EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eEEE-eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 5552 222111 1111111 22455666777766531 11222233333
Q ss_pred --------------------------ccccccceecccCC---ccc-----cc---------------------------
Q 044931 726 --------------------------CARTDGLVEIEYGE---ARV-----TT--------------------------- 744 (889)
Q Consensus 726 --------------------------~L~~L~l~~~~l~~---~~~-----~~--------------------------- 744 (889)
+|+.|+++++.+.. ... ++
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 45555555442221 001 22
Q ss_pred --cccccccccc-cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCC-cceeCCCCCCcccE
Q 044931 745 --LQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGE-ETTCSSGGFPQLRV 820 (889)
Q Consensus 745 --L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~ 820 (889)
|+.|+++++. ... .+...+++|+.|++++|.+.+..+..++++++|+.|++++|.+.+. ..+..+..+++|+.
T Consensus 331 ~~L~~L~l~~n~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHM---VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCC---CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCcccc---cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 2333332211 100 0102348999999999999887888899999999999998887652 23456788999999
Q ss_pred EEccccCCCcceecc-cCc---------------------c-cccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 821 LKLWNLFSLEEWTVE-KGA---------------------M-PRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 821 L~l~~~~~l~~~~~~-~~~---------------------l-p~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
|++++|.....+|.. +.. + ++|+.|++++ |+++ .+|.++..++ +|+.|+++++.
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~-N~l~-~ip~~~~~l~-~L~~L~L~~N~ 484 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN-NRIM-SIPKDVTHLQ-ALQELNVASNQ 484 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCS-SCCC-CCCTTTTSSC-CCSEEECCSSC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCC-CcCc-ccChhhcCCC-CCCEEECCCCC
Confidence 999998854424432 222 2 5777777777 5777 7888777888 88888888753
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=6.6e-22 Score=235.74 Aligned_cols=340 Identities=18% Similarity=0.102 Sum_probs=222.9
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.|..+++|.+..+......+..+.++++|++|++++|.+.. +.+..| . ++++|++|+|++|.++.+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~------------i~~~~f-~-~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------IEDGAY-Q-SLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------------ECTTTT-T-TCTTCCEEECTTCCCCEE
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC------------cChhHh-c-CCCCCCEEEccCCcCCCC
Confidence 55678999999777776556679999999999999998853 445566 5 899999999999999999
Q ss_pred ChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCccc--CchhhhhcccccccccccccCCCC-CCCccc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRF--LPDSIWKAKKLQHLYLNWIHSPID-GLSLSS 675 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~-~~~i~~ 675 (889)
|+..|++|.+|++|+|++|.++.+|. .|++|++|++|++++|.++. +|..+..+++|++|++++|..... +..+..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 98789999999999999999998885 58999999999999998874 577889999999999988653322 111211
Q ss_pred ccccccc-------------------------------------------------cccc--------------------
Q 044931 676 LNNLQTL-------------------------------------------------WGLS-------------------- 686 (889)
Q Consensus 676 l~~L~~L-------------------------------------------------~~~~-------------------- 686 (889)
+.+++.+ ....
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 1111100 0000
Q ss_pred -------------------------------------cccCCC-------------------------------------
Q 044931 687 -------------------------------------IESYTP------------------------------------- 692 (889)
Q Consensus 687 -------------------------------------~~~~~~------------------------------------- 692 (889)
......
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 000000
Q ss_pred ------ccccCCCCCCCCCeeecccCch---hhHHHHHhhhcccccccceec---cc-----------------------
Q 044931 693 ------FRQSDSTKWPRLIKLGVKCDSQ---MAIEFIINLLVCARTDGLVEI---EY----------------------- 737 (889)
Q Consensus 693 ------~~~~~l~~l~~L~~L~l~~~~~---~~l~~~l~~l~~L~~L~l~~~---~l----------------------- 737 (889)
........+++|+.|.++.+.. .........+.+|+.|++..+ ..
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 0000011223333343333321 112223333344444443321 00
Q ss_pred ---CC-cccccccccccccc-ccccccccccccCCCccEEEeeccCCCC-CCchhhhcCCCCCeEEeecCccCCCcceeC
Q 044931 738 ---GE-ARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVY-DPMPLLEELAHLNILRLYRGAYLGEETTCS 811 (889)
Q Consensus 738 ---~~-~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~ 811 (889)
.. ..+++++.++++++ +...+...+... +.|+.|++++|.... ..+..++.+++|++|+|++|.+.+ ..+..
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~ 513 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTA 513 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTT
T ss_pred ccccccccccccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHH
Confidence 00 22233444444332 222222123333 788888888886433 345567889999999999887654 44556
Q ss_pred CCCCCcccEEEccccCCCcce-ecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 812 SGGFPQLRVLKLWNLFSLEEW-TVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 812 ~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
+.++++|++|+|++|. +..+ +..+..+++|+.|++++ |++++..|..+.+++++|+.|+++++|
T Consensus 514 f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 7889999999999997 4554 55678899999999999 888855667788885489999998733
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.3e-22 Score=214.58 Aligned_cols=248 Identities=19% Similarity=0.145 Sum_probs=149.3
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecC-cccC-CCChHHhccccCCcEEeCCCCCCc-c
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEG-VYKL-KLSDDVIGKLLNLRYLGLRSTFID-S 622 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~-~l~~~~i~~l~~Lr~L~L~~~~i~-~ 622 (889)
.+++.|++.++.+.+... .++. + . .+++|++|++++ |.+. .+|. .|+++++|++|+|++|.+. .
T Consensus 50 ~~l~~L~L~~~~l~~~~~---------~~~~-l-~-~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP---------IPSS-L-A-NLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEE---------CCGG-G-G-GCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCCccCCcc---------cChh-H-h-CCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCc
Confidence 566666666666642100 1222 2 3 666666666663 5555 3444 6666666666666666665 5
Q ss_pred cccccCCCCCCcEEeecCCCcc-cCchhhhhcccccccccccccCC-CCCCCcccccccccccccccccCCCccccCCCC
Q 044931 623 LPKSVGILPRLETLDVKHTKLR-FLPDSIWKAKKLQHLYLNWIHSP-IDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTK 700 (889)
Q Consensus 623 lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 700 (889)
+|..++++++|++|++++|.+. .+|..+.++++|++|++++|... ..|..++.+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~----------------------- 173 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS----------------------- 173 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----------------------
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-----------------------
Confidence 6666666666666666666666 55666666666666666665432 3333332222
Q ss_pred CCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCC
Q 044931 701 WPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLV 780 (889)
Q Consensus 701 l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~ 780 (889)
++|+.|+++++.. . ...|. .+..+ + |+.|++++|.+.
T Consensus 174 -~~L~~L~L~~N~l------------------------------------~---~~~~~-~~~~l-~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 174 -KLFTSMTISRNRL------------------------------------T---GKIPP-TFANL-N-LAFVDLSRNMLE 210 (313)
T ss_dssp -TTCCEEECCSSEE------------------------------------E---EECCG-GGGGC-C-CSEEECCSSEEE
T ss_pred -hcCcEEECcCCee------------------------------------e---ccCCh-HHhCC-c-ccEEECcCCccc
Confidence 0344444443310 0 12333 44444 4 777777777776
Q ss_pred CCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcc
Q 044931 781 YDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQG 860 (889)
Q Consensus 781 ~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~ 860 (889)
+..+..++.+++|+.|+|++|.+.+.. + .+..+++|++|++++|.....+|..+..+++|+.|++++ |++++.+|..
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~ 287 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQG 287 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS-SEEEEECCCS
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeec-C-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC-CcccccCCCC
Confidence 666667777777777777776665422 2 255677777777777775446677777777777777777 5666566664
Q ss_pred hhhhhcccceEEeccCc
Q 044931 861 LQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 861 l~~l~~~L~~L~l~~cp 877 (889)
.+++ +|+.+++.++|
T Consensus 288 -~~l~-~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQ-RFDVSAYANNK 302 (313)
T ss_dssp -TTGG-GSCGGGTCSSS
T ss_pred -cccc-ccChHHhcCCC
Confidence 6677 77777777765
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2.7e-21 Score=210.57 Aligned_cols=285 Identities=18% Similarity=0.115 Sum_probs=203.4
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccc-c
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSL-P 624 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~l-p 624 (889)
.+++.+.+.++.+...+ .. -.+.|++|++++|.+..+++..|+++++|++|+|++|.++.+ |
T Consensus 33 c~l~~l~~~~~~l~~ip------------~~-----~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVP------------KE-----ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95 (332)
T ss_dssp EETTEEECCSSCCSSCC------------SC-----CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred ccCCEEECCCCCccccC------------CC-----CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH
Confidence 47999999888775321 11 235789999999999888766899999999999999999876 6
Q ss_pred cccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCC-CcccccccccccccccccCC--CccccCCCCC
Q 044931 625 KSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGL-SLSSLNNLQTLWGLSIESYT--PFRQSDSTKW 701 (889)
Q Consensus 625 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~--~~~~~~l~~l 701 (889)
..++++++|++|++++|.++.+|..+. ++|++|++++|.....|. .++.+++|+.|. +..+... +.....+..+
T Consensus 96 ~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE-MGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE-CCSCCCBGGGSCTTSSCSC
T ss_pred hHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE-CCCCccccCCCCcccccCC
Confidence 789999999999999999999987765 789999999887665554 367777777773 2222221 1233445555
Q ss_pred CCCCeeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc-ccccccccccccCCCccEEEeeccCCC
Q 044931 702 PRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLV 780 (889)
Q Consensus 702 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~ 780 (889)
+|+.|+++++.... ++..-.++|+.|+++++ +..++...+..+ ++|+.|++++|.+.
T Consensus 173 -~L~~L~l~~n~l~~--------------------l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 173 -KLNYLRISEAKLTG--------------------IPKDLPETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIR 230 (332)
T ss_dssp -CCSCCBCCSSBCSS--------------------CCSSSCSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCC
T ss_pred -ccCEEECcCCCCCc--------------------cCccccCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCC
Confidence 67777776653210 11112357888888764 345543256666 89999999999988
Q ss_pred CCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceec-ccC------cccccceeecccccCC
Q 044931 781 YDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTV-EKG------AMPRLRELEIRSCNNL 853 (889)
Q Consensus 781 ~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~------~lp~L~~L~l~~C~~L 853 (889)
+..+..++.+++|+.|+|++|.+. .++..+..+++|+.|++++|. +..++. .+. .++.|+.|++.+++ +
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~ 306 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP-V 306 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS-S
T ss_pred cCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc-c
Confidence 777778899999999999988775 455567788999999999987 555543 222 25778999999844 4
Q ss_pred C--CCCCcchhhhhcccceEEeccCc
Q 044931 854 K--PPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 854 ~--~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
. ...|..+..++ +|+.++++++.
T Consensus 307 ~~~~~~~~~~~~l~-~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVT-DRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBC-CSTTEEC----
T ss_pred cccccCcccccccc-hhhhhhccccc
Confidence 3 24566788888 99999998875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=5.9e-21 Score=207.72 Aligned_cols=286 Identities=19% Similarity=0.155 Sum_probs=192.4
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccc-
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSL- 623 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~l- 623 (889)
..+++.+.++++..... +.. -.+.|++|++++|.++.+++..|+++++|++|+|++|.++.+
T Consensus 30 ~c~l~~l~~~~~~l~~l-------------p~~----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKV-------------PKD----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92 (330)
T ss_dssp EEETTEEECTTSCCCSC-------------CCS----CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC
T ss_pred cCCCeEEEecCCCcccc-------------Ccc----CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC
Confidence 34788888888776432 111 235788889998888888776788888999999988888876
Q ss_pred ccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCC-CcccccccccccccccccCC--CccccCCCC
Q 044931 624 PKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGL-SLSSLNNLQTLWGLSIESYT--PFRQSDSTK 700 (889)
Q Consensus 624 p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~--~~~~~~l~~ 700 (889)
|..++++++|++|++++|.++.+|..+. ++|++|++++|.....+. .++.+++|++|. +..+... +.....+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE-CCSSCCCGGGBCTTGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE-CCCCcCCccCcChhhccC
Confidence 6788888889999998888888887664 688888888876544433 355666666653 2222211 122334555
Q ss_pred CCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc-ccccccccccccCCCccEEEeeccCC
Q 044931 701 WPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRL 779 (889)
Q Consensus 701 l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l 779 (889)
+++|+.|+++++... .+.....++|+.|+++++ +..++..++..+ ++|+.|++++|.+
T Consensus 170 l~~L~~L~l~~n~l~--------------------~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l 228 (330)
T 1xku_A 170 MKKLSYIRIADTNIT--------------------TIPQGLPPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSI 228 (330)
T ss_dssp CTTCCEEECCSSCCC--------------------SCCSSCCTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCC
T ss_pred CCCcCEEECCCCccc--------------------cCCccccccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcC
Confidence 666666666555310 111112367888888764 344432256666 8899999999988
Q ss_pred CCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecc-cC------cccccceeecccccC
Q 044931 780 VYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVE-KG------AMPRLRELEIRSCNN 852 (889)
Q Consensus 780 ~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~------~lp~L~~L~l~~C~~ 852 (889)
.+..+..++.+++|+.|+|++|.+. .++..+..+++|++|++++|. +..++.. +. ..+.|+.|++.+ |.
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~-N~ 304 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS-NP 304 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS-SS
T ss_pred ceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeec-Cc
Confidence 7666667888899999999887765 455567788899999999887 5555432 21 247788888888 55
Q ss_pred CCC--CCCcchhhhhcccceEEeccC
Q 044931 853 LKP--PQPQGLQNLTNTLKEFVLTNM 876 (889)
Q Consensus 853 L~~--~lp~~l~~l~~~L~~L~l~~c 876 (889)
+.. ..|..+..++ +|+.++++++
T Consensus 305 ~~~~~i~~~~f~~~~-~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQPSTFRCVY-VRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCGGGGTTCC-CGGGEEC---
T ss_pred ccccccCcccccccc-ceeEEEeccc
Confidence 541 2345677777 8888888765
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.9e-21 Score=207.31 Aligned_cols=284 Identities=15% Similarity=0.092 Sum_probs=202.6
Q ss_pred ceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChH
Q 044931 523 AVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDD 602 (889)
Q Consensus 523 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~ 602 (889)
..+.+.+..+... ..+..+ .++|++|++++|.+.. ..+..+ . .+++|++|++++|.++.+++.
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~------------~~~~~~-~-~l~~L~~L~L~~n~l~~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISE------------LRKDDF-K-GLQHLYALVLVNNKISKIHEK 96 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCE------------ECTTTT-T-TCTTCCEEECCSSCCCEECGG
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCc------------cCHhHh-h-CCCCCcEEECCCCccCccCHh
Confidence 3556666533333 234434 5799999999998753 333445 5 999999999999999988666
Q ss_pred HhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccCC---CCCCCcccccc
Q 044931 603 VIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHSP---IDGLSLSSLNN 678 (889)
Q Consensus 603 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~---~~~~~i~~l~~ 678 (889)
.|+++++|++|+|++|.++.+|..+. ++|++|++++|.+..+|.. +.++++|++|++++|... ..+..++.+ +
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 89999999999999999999998776 8999999999999999864 888999999999998754 445556655 6
Q ss_pred cccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCCcccccccccccccc-ccc
Q 044931 679 LQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHS 756 (889)
Q Consensus 679 L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~ 756 (889)
|+.|. +..+.... .+..+ .++|+.|+++++.. ......+ ..+++|+.|+++++ +..
T Consensus 174 L~~L~-l~~n~l~~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l------------------~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 174 LNYLR-ISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDL------------------LRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CSCCB-CCSSBCSS-CCSSS--CSSCSCCBCCSSCCCCCCTTSS------------------TTCTTCSCCBCCSSCCCC
T ss_pred cCEEE-CcCCCCCc-cCccc--cCCCCEEECCCCcCCccCHHHh------------------cCCCCCCEEECCCCcCCc
Confidence 66652 22222111 22222 25777777777642 1111111 35677888888764 455
Q ss_pred cccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCC------CCCCcccEEEccccCCC-
Q 044931 757 FFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSS------GGFPQLRVLKLWNLFSL- 829 (889)
Q Consensus 757 ~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l- 829 (889)
++..++..+ ++|+.|++++|.+. ..+..++.+++|+.|++++|.+..... ..+ ..+++|+.|++.+|+..
T Consensus 232 ~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 232 IENGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV-NDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CCTTGGGGC-TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT-TSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CChhHhhCC-CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh-hHccccccccccccccceEeecCcccc
Confidence 554356666 99999999999987 566679999999999999888765322 111 12688999999999854
Q ss_pred -cceecccCcccccceeeccccc
Q 044931 830 -EEWTVEKGAMPRLRELEIRSCN 851 (889)
Q Consensus 830 -~~~~~~~~~lp~L~~L~l~~C~ 851 (889)
...+..+..+++|+.|++++|.
T Consensus 309 ~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCGGGGTTBCCSTTEEC----
T ss_pred cccCcccccccchhhhhhccccc
Confidence 2345667889999999999854
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=5.5e-21 Score=216.65 Aligned_cols=266 Identities=18% Similarity=0.098 Sum_probs=206.1
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.+++|++|++++|.+..+| .++.+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 7899999999999999886 5999999999999999999986 999999999999999999986 889999999999
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCC-
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGE- 739 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~- 739 (889)
++|.....| ++.+++|+.|. +..+.... . .++.+++|+.|++..+.. ..+ .+..+++|+.|+++++.+..
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~-l~~N~l~~--l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLN-CARNTLTE--I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEE-CTTSCCSC--C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCeec--CCCCCcCCEEE-CCCCccce--e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 999866654 77778887773 33333222 2 488999999999999864 333 46778999999999874433
Q ss_pred --ccccccccccccccc-cccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCC
Q 044931 740 --ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFP 816 (889)
Q Consensus 740 --~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~ 816 (889)
..+++|+.|+++++- ..++ +..+ ++|+.|++++|.+.+. + ++.+++|+.|++++|.+.+.. .+.++
T Consensus 186 ~l~~l~~L~~L~l~~N~l~~~~---l~~l-~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~----~~~l~ 254 (457)
T 3bz5_A 186 DVSQNKLLNRLNCDTNNITKLD---LNQN-IQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELD----VSTLS 254 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSCCC---CTTC-TTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCC----CTTCT
T ss_pred ccccCCCCCEEECcCCcCCeec---cccC-CCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcC----HHHCC
Confidence 667899999998753 4332 4445 9999999999999863 3 889999999999998887632 34566
Q ss_pred ccc----------EEEccccCCCcceecccCcccccceeecccccCCCCCCCcc--------hhhhhcccceEEeccC
Q 044931 817 QLR----------VLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQG--------LQNLTNTLKEFVLTNM 876 (889)
Q Consensus 817 ~L~----------~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~--------l~~l~~~L~~L~l~~c 876 (889)
+|+ .|++++|..+..+| .+.+++|+.|++++|+.+. .+|.. +.+++ +|+.|+++++
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~~~-~L~~L~L~~N 328 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQNP-KLVYLYLNNT 328 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTTCT-TCCEEECTTC
T ss_pred CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccc-eeccCCCcceEechhhcc-cCCEEECCCC
Confidence 555 45555565555555 4678999999999987655 55532 34555 6666666654
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=5.4e-21 Score=207.20 Aligned_cols=225 Identities=19% Similarity=0.190 Sum_probs=173.5
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.++++.|++.+|.+.. +++.++ .+++|++|+|++|.+..+|. .++++++|++|+|++|.+..+|
T Consensus 80 ~~~l~~L~L~~n~l~~------------lp~~l~---~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ------------FPDQAF---RLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALP 143 (328)
T ss_dssp STTCCEEEEESSCCSS------------CCSCGG---GGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCC
T ss_pred ccceeEEEccCCCchh------------cChhhh---hCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCc
Confidence 4678888998888752 333444 78999999999999998887 8999999999999999999999
Q ss_pred cccCCCCCCcEEeecCC-CcccCchhhhh---------cccccccccccccCCCCCCCcccccccccccccccccCCCcc
Q 044931 625 KSVGILPRLETLDVKHT-KLRFLPDSIWK---------AKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFR 694 (889)
Q Consensus 625 ~~i~~L~~L~~L~L~~~-~l~~lp~~i~~---------L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~ 694 (889)
..++++++|++|++++| .+..+|..+.. +++|++|++++|....+|..++.++
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~----------------- 206 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ----------------- 206 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCT-----------------
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCC-----------------
Confidence 99999999999999997 56678877654 7888888887776544444433333
Q ss_pred ccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEe
Q 044931 695 QSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTL 774 (889)
Q Consensus 695 ~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L 774 (889)
+|+.|+++++ .+..+|. .+..+ ++|+.|++
T Consensus 207 --------~L~~L~L~~N----------------------------------------~l~~l~~-~l~~l-~~L~~L~L 236 (328)
T 4fcg_A 207 --------NLKSLKIRNS----------------------------------------PLSALGP-AIHHL-PKLEELDL 236 (328)
T ss_dssp --------TCCEEEEESS----------------------------------------CCCCCCG-GGGGC-TTCCEEEC
T ss_pred --------CCCEEEccCC----------------------------------------CCCcCch-hhccC-CCCCEEEC
Confidence 3333333332 1123444 45555 88999999
Q ss_pred eccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCC
Q 044931 775 SMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 775 ~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~ 854 (889)
++|.+.+..+..++.+++|+.|+|++|...+ .++..+..+++|+.|+|++|+.+..+|..++.+++|+.+.+.. +.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~-~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP-HLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG-GGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH-HHHH
Confidence 9988887778888999999999999777765 4555678899999999999998899999999999999998876 4444
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=3.4e-20 Score=209.98 Aligned_cols=299 Identities=17% Similarity=0.140 Sum_probs=190.2
Q ss_pred ccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC
Q 044931 521 QFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS 600 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~ 600 (889)
+...+.+.+..+.... .+. ..++|++|++++|.+...+ . ..+.|++|++++|.++.+|
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~-----------------~-~~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALS-----------------D-LPPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC-----------------S-CCTTCCEEECCSSCCSSCC
T ss_pred cCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCccc-----------------C-CCCCCCEEECcCCCCCCCc
Confidence 3456777777554443 221 2478888888888764311 1 2257888888888888876
Q ss_pred hHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccc
Q 044931 601 DDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQ 680 (889)
Q Consensus 601 ~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~ 680 (889)
.|+++++|++|++++|.++.+|..+ .+|++|++++|+++.+| .++++++|++|++++|....+|... .+|+
T Consensus 148 --~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 --ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE 218 (454)
T ss_dssp --CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred --ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence 4888888888888888888887654 47888888888888887 5888888888888887765555433 3555
Q ss_pred cccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC--cccccccccccccc-cccc
Q 044931 681 TLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE--ARVTTLQELYLRGS-IHSF 757 (889)
Q Consensus 681 ~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~--~~~~~L~~L~l~~~-~~~~ 757 (889)
.|. +..+....+..++.+++|+.|+++++....++. ..++|+.|+++++.+.. ..+++|+.|+++++ +..+
T Consensus 219 ~L~---l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 219 SIV---AGNNILEELPELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp EEE---CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE
T ss_pred EEE---CcCCcCCcccccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcc
Confidence 552 222222233457788888888888776422211 23677888887764443 33467888888764 3444
Q ss_pred ccccccccCCCccEEEeeccCCCCCCchhhhcC-CCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceeccc
Q 044931 758 FDYGIEWNYPNLKILTLSMSRLVYDPMPLLEEL-AHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEK 836 (889)
Q Consensus 758 p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 836 (889)
|. .+++|+.|++++|.+.+ +..+ ++|+.|++++|.+.+ ++. .+++|+.|++++|. +..+|.
T Consensus 293 ~~-----~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp~---~~~~L~~L~L~~N~-l~~lp~-- 354 (454)
T 1jl5_A 293 SE-----LPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LPA---LPPRLERLIASFNH-LAEVPE-- 354 (454)
T ss_dssp SC-----CCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCCC--
T ss_pred cC-----cCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc--ccc---cCCcCCEEECCCCc-cccccc--
Confidence 43 33678888888887653 2233 478888888776654 221 25778888888775 556665
Q ss_pred CcccccceeecccccCCCC--CCCcchhhh-------------hcccceEEeccCc
Q 044931 837 GAMPRLRELEIRSCNNLKP--PQPQGLQNL-------------TNTLKEFVLTNMP 877 (889)
Q Consensus 837 ~~lp~L~~L~l~~C~~L~~--~lp~~l~~l-------------~~~L~~L~l~~cp 877 (889)
.+++|+.|++++ |++++ .+|.++.++ + +|+.|++++++
T Consensus 355 -~l~~L~~L~L~~-N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~-~L~~L~ls~N~ 407 (454)
T 1jl5_A 355 -LPQNLKQLHVEY-NPLREFPDIPESVEDLRMNSHLAEVPELPQ-NLKQLHVETNP 407 (454)
T ss_dssp -CCTTCCEEECCS-SCCSSCCCCCTTCCEEECCC----------------------
T ss_pred -hhhhccEEECCC-CCCCcCCCChHHHHhhhhcccccccccccC-cCCEEECCCCc
Confidence 467888888877 66774 466677666 6 78888887755
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.4e-20 Score=202.62 Aligned_cols=248 Identities=16% Similarity=0.103 Sum_probs=167.4
Q ss_pred cceeeeeeeeCCCCC--cCCCccccccccceeEeec-ccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccC-
Q 044931 522 FAVRRLATYLGVSTN--FIPSEWSWSWHLRSYVAFD-TRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKL- 597 (889)
Q Consensus 522 ~~~r~lsl~~~~~~~--~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~- 597 (889)
..++++.+..+.... ..+..+..+++|++|++++ |.+.+. ++..+ . .+++|++|+|++|.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~------------~p~~l-~-~l~~L~~L~Ls~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP------------IPPAI-A-KLTQLHYLYITHTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC------------CCGGG-G-GCTTCSEEEEEEECCEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc------------CChhH-h-cCCCCCEEECcCCeeCC
Confidence 468888888666654 5677899999999999995 766532 23334 4 8999999999999998
Q ss_pred CCChHHhccccCCcEEeCCCCCCc-ccccccCCCCCCcEEeecCCCcc-cCchhhhhcc-cccccccccccCC-CCCCCc
Q 044931 598 KLSDDVIGKLLNLRYLGLRSTFID-SLPKSVGILPRLETLDVKHTKLR-FLPDSIWKAK-KLQHLYLNWIHSP-IDGLSL 673 (889)
Q Consensus 598 ~l~~~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~-~~~~~i 673 (889)
.+|. .|+++++|++|+|++|.+. .+|..++++++|++|++++|.++ .+|..+.+++ +|++|++++|... ..|..+
T Consensus 116 ~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 116 AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 5666 8999999999999999998 78999999999999999999998 8999999998 9999999987643 344444
Q ss_pred ccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc
Q 044931 674 SSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS 753 (889)
Q Consensus 674 ~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~ 753 (889)
+.++ |+.|+++++.. .
T Consensus 195 ~~l~--------------------------L~~L~Ls~N~l-------------------------------~------- 210 (313)
T 1ogq_A 195 ANLN--------------------------LAFVDLSRNML-------------------------------E------- 210 (313)
T ss_dssp GGCC--------------------------CSEEECCSSEE-------------------------------E-------
T ss_pred hCCc--------------------------ccEEECcCCcc-------------------------------c-------
Confidence 3332 33344433310 0
Q ss_pred ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCccee
Q 044931 754 IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWT 833 (889)
Q Consensus 754 ~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 833 (889)
...|. .+..+ ++|+.|++++|.+.+ .++.+..+++|++|+|++|.+.+ .++..+..+++|+.|++++|.....+|
T Consensus 211 -~~~~~-~~~~l-~~L~~L~L~~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 211 -GDASV-LFGSD-KNTQKIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp -ECCGG-GCCTT-SCCSEEECCSSEECC-BGGGCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred -CcCCH-HHhcC-CCCCEEECCCCceee-ecCcccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCcccccCC
Confidence 01122 33333 556666666665542 22335555666666666555543 233345555666666666665333444
Q ss_pred cccCcccccceeecccccCCC
Q 044931 834 VEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 834 ~~~~~lp~L~~L~l~~C~~L~ 854 (889)
.. +.+++|+.|++.+++.+.
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEE
T ss_pred CC-ccccccChHHhcCCCCcc
Confidence 43 556666666666644454
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=4e-20 Score=201.10 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=201.6
Q ss_pred ceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChH
Q 044931 523 AVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDD 602 (889)
Q Consensus 523 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~ 602 (889)
..|.+.+...... ..+..+ .++++.|++++|.+.. ..+..+ . .+++|++|++++|.+..+++.
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~------------~~~~~~-~-~l~~L~~L~L~~n~l~~~~~~ 94 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITE------------IKDGDF-K-NLKNLHTLILINNKISKISPG 94 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCC------------BCTTTT-T-TCTTCCEEECCSSCCCCBCTT
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCE------------eChhhh-c-cCCCCCEEECCCCcCCeeCHH
Confidence 3455555522222 233333 4799999999998864 333344 5 899999999999999988555
Q ss_pred HhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCC---CCCCCcccccc
Q 044931 603 VIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSP---IDGLSLSSLNN 678 (889)
Q Consensus 603 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~---~~~~~i~~l~~ 678 (889)
.|+++++|++|+|++|.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|... ..+..++.+++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred HhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 89999999999999999999998776 799999999999998876 5888999999999998754 44556677777
Q ss_pred cccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCCcccccccccccccc-ccc
Q 044931 679 LQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHS 756 (889)
Q Consensus 679 L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~ 756 (889)
|+.|. +..+.... .+..+ .++|+.|+++++.. ...+..+ ..+++|+.|+++++ +..
T Consensus 173 L~~L~-l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~------------------~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 173 LSYIR-IADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASL------------------KGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CCEEE-CCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGG------------------TTCTTCCEEECCSSCCCE
T ss_pred cCEEE-CCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHh------------------cCCCCCCEEECCCCcCce
Confidence 77763 22222111 12222 27888888887753 2212222 24566777777764 344
Q ss_pred cccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCC------CCCCcccEEEccccCCCc
Q 044931 757 FFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSS------GGFPQLRVLKLWNLFSLE 830 (889)
Q Consensus 757 ~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l~ 830 (889)
++..++..+ ++|+.|++++|.+. ..+..+..+++|++|++++|.+..... ..+ ..+++|+.|++.+|+...
T Consensus 231 ~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~-~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 231 VDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS-NDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp ECTTTGGGS-TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT-TSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred eChhhccCC-CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh-hhcCCcccccccccccceEeecCcccc
Confidence 443256666 99999999999987 566778999999999999888765321 111 235889999999998432
Q ss_pred --ceecccCcccccceeeccc
Q 044931 831 --EWTVEKGAMPRLRELEIRS 849 (889)
Q Consensus 831 --~~~~~~~~lp~L~~L~l~~ 849 (889)
..|..+..+++|+.+++++
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC--
T ss_pred cccCccccccccceeEEEecc
Confidence 2245677889999999987
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=201.25 Aligned_cols=248 Identities=21% Similarity=0.205 Sum_probs=127.5
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCchh-hhhccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYL 661 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 661 (889)
+.|++|++++|.++.+++..|.++++|++|+|++|.++.++ ..++++++|++|++++|+++.+|.. +.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 36777777777777666656777777777777777777654 4577777777777777777777665 666777777777
Q ss_pred ccccCCCCCC--CcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC
Q 044931 662 NWIHSPIDGL--SLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE 739 (889)
Q Consensus 662 ~~~~~~~~~~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~ 739 (889)
++|....+|. .++.+++|++|..-............++.+++|+.|+++++.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-------------------------- 185 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-------------------------- 185 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--------------------------
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--------------------------
Confidence 7766544443 344455555442111111111122334444444444444332
Q ss_pred cccccccccccccccccc-ccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCccee--CCCCCC
Q 044931 740 ARVTTLQELYLRGSIHSF-FDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTC--SSGGFP 816 (889)
Q Consensus 740 ~~~~~L~~L~l~~~~~~~-p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~--~~~~~~ 816 (889)
+... |. ++..+ ++|+.|++++|.+.......++.+++|+.|++++|.+.+..+.. .....+
T Consensus 186 --------------l~~~~~~-~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 186 --------------LQSYEPK-SLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp --------------CCEECTT-TTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred --------------cCccCHH-HHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 1111 22 33333 55555555555543222222334555555555544443311110 111233
Q ss_pred cccEEEccccCCCc----ceecccCcccccceeecccccCCCCCCCcch-hhhhcccceEEeccC
Q 044931 817 QLRVLKLWNLFSLE----EWTVEKGAMPRLRELEIRSCNNLKPPQPQGL-QNLTNTLKEFVLTNM 876 (889)
Q Consensus 817 ~L~~L~l~~~~~l~----~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l-~~l~~~L~~L~l~~c 876 (889)
.++.+++.++.... .+|..+..+++|+.|++++ |+++ .+|.++ ..++ +|+.|+++++
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~-~i~~~~~~~l~-~L~~L~L~~N 311 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLK-SVPDGIFDRLT-SLQKIWLHTN 311 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCC-CCCTTTTTTCT-TCCEEECCSS
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCC-ccCHHHHhcCC-CCCEEEeeCC
Confidence 44445544443211 2344445555666666655 4555 555543 4555 6666666553
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=4.5e-20 Score=219.85 Aligned_cols=313 Identities=18% Similarity=0.135 Sum_probs=213.3
Q ss_pred ccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC
Q 044931 521 QFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS 600 (889)
Q Consensus 521 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~ 600 (889)
..+.+.|.+..+......+..+..+++|++|++++|.+.. ..+..| . ++++|++|+|++|.++.++
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~------------l~~~~f-~-~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------------LALGAF-S-GLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------------ECGGGG-T-TCTTCCEEECTTSCCCCST
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC------------CCHHHh-c-CCCCCCEEECCCCcCCCCC
Confidence 3568888888666665555678999999999999998853 445566 6 8999999999999999998
Q ss_pred hHHhccccCCcEEeCCCCCCcc--cccccCCCCCCcEEeecCCCcccCc-hhhhhccccccc----ccccccC-------
Q 044931 601 DDVIGKLLNLRYLGLRSTFIDS--LPKSVGILPRLETLDVKHTKLRFLP-DSIWKAKKLQHL----YLNWIHS------- 666 (889)
Q Consensus 601 ~~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L----~l~~~~~------- 666 (889)
+..|++|++|++|+|++|.+.. +|..++.+++|++|++++|+++.++ ..+..+.+++.+ +++.+..
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 8679999999999999999874 5788999999999999999888664 345444433321 1110000
Q ss_pred --------------------------------------------------------------------------------
Q 044931 667 -------------------------------------------------------------------------------- 666 (889)
Q Consensus 667 -------------------------------------------------------------------------------- 666 (889)
T Consensus 221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 300 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID 300 (635)
T ss_dssp TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence
Q ss_pred ----------------------------------------CCCC--------------------CCcccccccccccccc
Q 044931 667 ----------------------------------------PIDG--------------------LSLSSLNNLQTLWGLS 686 (889)
Q Consensus 667 ----------------------------------------~~~~--------------------~~i~~l~~L~~L~~~~ 686 (889)
...+ .....+++|+.| .
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L---~ 377 (635)
T 4g8a_A 301 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL---D 377 (635)
T ss_dssp TTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEE---E
T ss_pred hhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccc---h
Confidence 0000 000001111111 1
Q ss_pred cccCCC---------------------------ccccCCCCCCCCCeeecccCch--hhHHHHHhhhcccccccceeccc
Q 044931 687 IESYTP---------------------------FRQSDSTKWPRLIKLGVKCDSQ--MAIEFIINLLVCARTDGLVEIEY 737 (889)
Q Consensus 687 ~~~~~~---------------------------~~~~~l~~l~~L~~L~l~~~~~--~~l~~~l~~l~~L~~L~l~~~~l 737 (889)
...+.. .....+..+++|+.+.+..+.. ......+..+.+++.++++.+.+
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 111100 0112233455555555554432 11122344556666666665411
Q ss_pred -----CC-ccccccccccccccc--cc-cccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcc
Q 044931 738 -----GE-ARVTTLQELYLRGSI--HS-FFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEET 808 (889)
Q Consensus 738 -----~~-~~~~~L~~L~l~~~~--~~-~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~ 808 (889)
.. ..+++|+.|+++++- .. .|. .+..+ ++|+.|+|++|.+.+..+..+++|++|+.|+|++|.+.+ ..
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~ 534 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LD 534 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CC
T ss_pred ccccccccccchhhhhhhhhhcccccccCch-hhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CC
Confidence 22 567899999998752 33 444 66666 999999999999988888889999999999999888765 34
Q ss_pred eeCCCCCCcccEEEccccCCCcceecccCcc-cccceeecccccCCC
Q 044931 809 TCSSGGFPQLRVLKLWNLFSLEEWTVEKGAM-PRLRELEIRSCNNLK 854 (889)
Q Consensus 809 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-p~L~~L~l~~C~~L~ 854 (889)
+..+.++++|++|++++|......|..+..+ ++|+.|++++ |.+.
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~-Np~~ 580 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ-NDFA 580 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT-CCBC
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC-CCCc
Confidence 4567889999999999998555556677777 5899999998 5555
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=3.6e-19 Score=207.68 Aligned_cols=255 Identities=19% Similarity=0.083 Sum_probs=157.6
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
.++++|+++++.+... +.. -.++|+.|+|++|.++.+|. .+++|++|+|++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~l-------------p~~----l~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-------------PDC----LPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV 98 (622)
T ss_dssp HCCCEEECCSSCCSCC-------------CSC----CCTTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC
T ss_pred CCCcEEEecCCCcCcc-------------Chh----hCCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC
Confidence 4678888888777521 221 22577888888888877765 46778888888888888876
Q ss_pred ccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCC
Q 044931 626 SVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLI 705 (889)
Q Consensus 626 ~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~ 705 (889)
.+++|++|++++|+++.+|. .+++|+.|++++|....+|..+ ++|+.|. +..+... .+. ..+++|+
T Consensus 99 ---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~-Ls~N~l~--~l~--~~~~~L~ 164 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVLP---PGLQELS-VSDNQLA--SLP--ALPSELC 164 (622)
T ss_dssp ---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCCC---TTCCEEE-CCSSCCS--CCC--CCCTTCC
T ss_pred ---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCCC---CCCCEEE-CcCCcCC--CcC--CccCCCC
Confidence 56788888888888887776 5677888888877766666533 4555552 2222211 111 2345666
Q ss_pred eeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc-ccccccccccccCCCccEEEeeccCCCCCCc
Q 044931 706 KLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPM 784 (889)
Q Consensus 706 ~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~ 784 (889)
.|.+.++....++ ..+++|+.|+++++ +..+|. .+++|+.|++++|.+...+
T Consensus 165 ~L~L~~N~l~~l~---------------------~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~- 217 (622)
T 3g06_A 165 KLWAYNNQLTSLP---------------------MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP- 217 (622)
T ss_dssp EEECCSSCCSCCC---------------------CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC-
T ss_pred EEECCCCCCCCCc---------------------ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccC-
Confidence 6766665431111 23456666666653 344443 2266777777777665322
Q ss_pred hhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhh
Q 044931 785 PLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNL 864 (889)
Q Consensus 785 ~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l 864 (889)
..+++|+.|+|++|.+.. ++ ..+++|+.|++++|. +..+|. .+++|+.|++++ |+++ .+|..+.++
T Consensus 218 ---~~~~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~-N~L~-~lp~~l~~l 283 (622)
T 3g06_A 218 ---ALPSGLKELIVSGNRLTS--LP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYR-NQLT-RLPESLIHL 283 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCS-SCCC-SCCGGGGGS
T ss_pred ---CCCCCCCEEEccCCccCc--CC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCC-CCCC-cCCHHHhhc
Confidence 124667777777665543 22 445677777777764 455554 456777777776 5666 677777777
Q ss_pred hcccceEEeccCc
Q 044931 865 TNTLKEFVLTNMP 877 (889)
Q Consensus 865 ~~~L~~L~l~~cp 877 (889)
+ +|+.|+|+++|
T Consensus 284 ~-~L~~L~L~~N~ 295 (622)
T 3g06_A 284 S-SETTVNLEGNP 295 (622)
T ss_dssp C-TTCEEECCSCC
T ss_pred c-ccCEEEecCCC
Confidence 7 77777777665
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=5.4e-22 Score=226.79 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=31.6
Q ss_pred CceeeeEEEecCcccCCCChHHh-cccc----CCcEEeCCCCCCc-----ccccccCCCCCCcEEeecCCCcc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVI-GKLL----NLRYLGLRSTFID-----SLPKSVGILPRLETLDVKHTKLR 644 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i-~~l~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~ 644 (889)
.+++|++|+|++|.+.......+ ..+. +|++|+|++|.++ .+|..+.++++|++|++++|.+.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 45555666666555443211122 2233 4566666555554 34555555555666666555544
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=7.5e-19 Score=198.90 Aligned_cols=292 Identities=20% Similarity=0.126 Sum_probs=218.6
Q ss_pred eeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHH
Q 044931 524 VRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDV 603 (889)
Q Consensus 524 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~ 603 (889)
.+++.+..+.... .+. -.++|++|++++|.+.+.+ . .++.|++|++++|.+..++. .
T Consensus 73 l~~L~l~~~~l~~--lp~--~~~~L~~L~l~~n~l~~lp-----------------~-~~~~L~~L~l~~n~l~~l~~-~ 129 (454)
T 1jl5_A 73 AHELELNNLGLSS--LPE--LPPHLESLVASCNSLTELP-----------------E-LPQSLKSLLVDNNNLKALSD-L 129 (454)
T ss_dssp CSEEECTTSCCSC--CCS--CCTTCSEEECCSSCCSSCC-----------------C-CCTTCCEEECCSSCCSCCCS-C
T ss_pred CCEEEecCCcccc--CCC--CcCCCCEEEccCCcCCccc-----------------c-ccCCCcEEECCCCccCcccC-C
Confidence 4556665343332 111 2478999999999875321 2 55789999999999987765 2
Q ss_pred hccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCccccccccccc
Q 044931 604 IGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLW 683 (889)
Q Consensus 604 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~ 683 (889)
..+|++|++++|.++.+| .++++++|++|++++|+++.+|..+ .+|++|++++|....+| .++.+++|+.|.
T Consensus 130 ---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 130 ---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp ---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred ---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEE
Confidence 269999999999999999 6999999999999999999988654 58999999999877766 677888888773
Q ss_pred ccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCC--cccccccccccccc-ccccccc
Q 044931 684 GLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE--ARVTTLQELYLRGS-IHSFFDY 760 (889)
Q Consensus 684 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~--~~~~~L~~L~l~~~-~~~~p~~ 760 (889)
+..+... .+.. ..++|+.|+++++....++ .+..+++|+.|+++++.+.. ..+++|+.|+++++ +..+|.
T Consensus 202 -l~~N~l~--~l~~--~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~- 274 (454)
T 1jl5_A 202 -ADNNSLK--KLPD--LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE- 274 (454)
T ss_dssp -CCSSCCS--SCCC--CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC-
T ss_pred -CCCCcCC--cCCC--CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc-
Confidence 2222211 1111 2358999999998753333 36788999999999875544 34579999999875 455665
Q ss_pred cccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCC-CcccEEEccccCCCcceecccCcc
Q 044931 761 GIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGF-PQLRVLKLWNLFSLEEWTVEKGAM 839 (889)
Q Consensus 761 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l 839 (889)
.+++|+.|++++|.+.+.. . -.++|+.|++++|.+.+ + ..+ ++|+.|++++|. +..+|.. +
T Consensus 275 ----~~~~L~~L~ls~N~l~~l~--~--~~~~L~~L~l~~N~l~~--i----~~~~~~L~~L~Ls~N~-l~~lp~~---~ 336 (454)
T 1jl5_A 275 ----LPQSLTFLDVSENIFSGLS--E--LPPNLYYLNASSNEIRS--L----CDLPPSLEELNVSNNK-LIELPAL---P 336 (454)
T ss_dssp ----CCTTCCEEECCSSCCSEES--C--CCTTCCEEECCSSCCSE--E----CCCCTTCCEEECCSSC-CSCCCCC---C
T ss_pred ----ccCcCCEEECcCCccCccc--C--cCCcCCEEECcCCcCCc--c----cCCcCcCCEEECCCCc-ccccccc---C
Confidence 2389999999999987521 1 12699999999887754 1 234 599999999987 5566653 6
Q ss_pred cccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 840 PRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 840 p~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
++|+.|++++ ++++ .+|. .++ +|+.|++++++
T Consensus 337 ~~L~~L~L~~-N~l~-~lp~---~l~-~L~~L~L~~N~ 368 (454)
T 1jl5_A 337 PRLERLIASF-NHLA-EVPE---LPQ-NLKQLHVEYNP 368 (454)
T ss_dssp TTCCEEECCS-SCCS-CCCC---CCT-TCCEEECCSSC
T ss_pred CcCCEEECCC-Cccc-cccc---hhh-hccEEECCCCC
Confidence 8999999999 7899 8987 466 99999999865
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=6.2e-20 Score=198.19 Aligned_cols=278 Identities=17% Similarity=0.118 Sum_probs=197.6
Q ss_pred hhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhh
Q 044931 573 MITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWK 652 (889)
Q Consensus 573 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~ 652 (889)
.+..++ . .+++|+.|+|++|.+..+++..|+++++|++|+|++|.+..+++ +..+++|++|++++|.++.+|.
T Consensus 25 ~~~~~~-~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 25 ALASLR-Q-SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp HHHHHH-T-TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----
T ss_pred hHHHHh-c-cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----
Confidence 445556 5 78899999999999999887789999999999999999987765 9999999999999999988773
Q ss_pred cccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhccccccc
Q 044931 653 AKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDG 731 (889)
Q Consensus 653 L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~ 731 (889)
+++|++|++++|.....+. ..+++|++|. +..+.........++.+++|+.|+++++.. ......+.
T Consensus 98 ~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~-l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------- 165 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSC--SRGQGKKNIY-LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------- 165 (317)
T ss_dssp CTTCCEEECCSSCCSEEEE--CCCSSCEEEE-CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG---------
T ss_pred CCCcCEEECCCCccCCcCc--cccCCCCEEE-CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh---------
Confidence 4899999999987554432 2355566552 333332333344566777777777777643 11111110
Q ss_pred ceecccCCcccccccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCccee
Q 044931 732 LVEIEYGEARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTC 810 (889)
Q Consensus 732 l~~~~l~~~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~ 810 (889)
..+++|+.|+++++ +..+|. . ..+ ++|+.|+|++|.+.+ .++.+..+++|+.|+|++|.+.. ++.
T Consensus 166 --------~~l~~L~~L~L~~N~l~~~~~-~-~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~ 231 (317)
T 3o53_A 166 --------ASSDTLEHLNLQYNFIYDVKG-Q-VVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEK 231 (317)
T ss_dssp --------GGTTTCCEEECTTSCCCEEEC-C-CCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECT
T ss_pred --------hccCcCCEEECCCCcCccccc-c-ccc-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhh
Confidence 13467777777764 345553 2 224 999999999999875 44558899999999999887763 555
Q ss_pred CCCCCCcccEEEccccCCC-cceecccCcccccceeecccccCCCCCCCcchhhhh-cccceEEeccCchhHHHH
Q 044931 811 SSGGFPQLRVLKLWNLFSL-EEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLT-NTLKEFVLTNMPSTFGEA 883 (889)
Q Consensus 811 ~~~~~~~L~~L~l~~~~~l-~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~-~~L~~L~l~~cp~~~~~~ 883 (889)
.+..+++|+.|++++|+.. ..++..+..+++|+.|++.+|+.+++..|......+ ...........|..|...
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~~~~ 306 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCChhHHHH
Confidence 6788999999999999855 356777888999999999988888855554322211 012234555566666543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.4e-19 Score=192.67 Aligned_cols=105 Identities=19% Similarity=0.141 Sum_probs=58.1
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC---ChHHhccccCCcEEeCCCCCCcc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL---SDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
++|++|.+.+|.+.. ....+| . .+++|++|++++|.+... +. .+..+.+|++|+|++|.+..
T Consensus 28 ~~l~~L~L~~n~l~~------------i~~~~~-~-~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 28 SSATRLELESNKLQS------------LPHGVF-D-KLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp TTCCEEECCSSCCCC------------CCTTTT-T-TCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEECCSCSEEE
T ss_pred CCCCEEECCCCccCc------------cCHhHh-h-ccccCCEEECCCCccCcccCccc-ccccccccCEEECCCCcccc
Confidence 456666666655532 222333 3 556666666666655533 23 45555666666666666666
Q ss_pred cccccCCCCCCcEEeecCCCcccCch--hhhhccccccccccccc
Q 044931 623 LPKSVGILPRLETLDVKHTKLRFLPD--SIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 623 lp~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~ 665 (889)
+|..+..+++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 65556666666666666665555543 45555566666665543
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.4e-19 Score=206.96 Aligned_cols=267 Identities=19% Similarity=0.090 Sum_probs=195.5
Q ss_pred ceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChH
Q 044931 523 AVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDD 602 (889)
Q Consensus 523 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~ 602 (889)
..+.+.+..+... ..+..+. ++|++|++++|.+...+ . .+++|++|+|++|.++.+|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp-----------------~-~l~~L~~L~Ls~N~l~~lp~- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-----------------A-LPPELRTLEVSGNQLTSLPV- 98 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC-----------------C-CCTTCCEEEECSCCCSCCCC-
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC-----------------C-cCCCCCEEEcCCCcCCcCCC-
Confidence 4678888855554 3344443 89999999999875321 3 66789999999999998886
Q ss_pred HhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccc
Q 044931 603 VIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTL 682 (889)
Q Consensus 603 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L 682 (889)
.+++|++|+|++|.++.+|. .+.+|++|++++|+++.+|.. +++|++|++++|....+|..+ .+|+.|
T Consensus 99 ---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~---~~L~~L 166 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKL 166 (622)
T ss_dssp ---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred ---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCcc---CCCCEE
Confidence 78999999999999999987 678999999999999999975 489999999999877666543 445555
Q ss_pred cccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc-cccccccc
Q 044931 683 WGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHSFFDYG 761 (889)
Q Consensus 683 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~~p~~~ 761 (889)
. +..+. ...+. ..+++|+.|+++++....++ ..+++|+.|.++++ +..+|.
T Consensus 167 ~-L~~N~--l~~l~--~~~~~L~~L~Ls~N~l~~l~---------------------~~~~~L~~L~L~~N~l~~l~~-- 218 (622)
T 3g06_A 167 W-AYNNQ--LTSLP--MLPSGLQELSVSDNQLASLP---------------------TLPSELYKLWAYNNRLTSLPA-- 218 (622)
T ss_dssp E-CCSSC--CSCCC--CCCTTCCEEECCSSCCSCCC---------------------CCCTTCCEEECCSSCCSSCCC--
T ss_pred E-CCCCC--CCCCc--ccCCCCcEEECCCCCCCCCC---------------------CccchhhEEECcCCcccccCC--
Confidence 2 22222 11222 55688999999887421100 12457777777764 355554
Q ss_pred ccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccc
Q 044931 762 IEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPR 841 (889)
Q Consensus 762 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~ 841 (889)
.+++|+.|++++|.++..+ ..+++|+.|+|++|.+.. ++. .+++|+.|++++|. +..+|..+..+++
T Consensus 219 ---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~ 285 (622)
T 3g06_A 219 ---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSS 285 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CCSCCGGGGGSCT
T ss_pred ---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCC-CCcCCHHHhhccc
Confidence 2378999999999887522 567889999999887653 332 67889999999886 6678888888999
Q ss_pred cceeecccccCCCCCCCcchhhhh
Q 044931 842 LRELEIRSCNNLKPPQPQGLQNLT 865 (889)
Q Consensus 842 L~~L~l~~C~~L~~~lp~~l~~l~ 865 (889)
|+.|++++ |.+++..|..+..++
T Consensus 286 L~~L~L~~-N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 286 ETTVNLEG-NPLSERTLQALREIT 308 (622)
T ss_dssp TCEEECCS-CCCCHHHHHHHHHHH
T ss_pred cCEEEecC-CCCCCcCHHHHHhcc
Confidence 99999988 667745565555554
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.8e-19 Score=192.19 Aligned_cols=226 Identities=21% Similarity=0.167 Sum_probs=154.8
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccc---ccccCCCCCCcEEeecCCCcccCchhhhhcccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSL---PKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLY 660 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 660 (889)
++|+.|++++|.+..+++..|.++++|++|+|++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5688888888888888875578888888888888887755 5667778888888888888888887788888888888
Q ss_pred cccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCC
Q 044931 661 LNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGE 739 (889)
Q Consensus 661 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~ 739 (889)
+++|.....+. ...+..+++|+.|+++++.. ......+
T Consensus 108 l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------ 146 (306)
T 2z66_A 108 FQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIF------------------ 146 (306)
T ss_dssp CTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTT------------------
T ss_pred CCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhc------------------
Confidence 88765433332 01223334444444444321 1000000
Q ss_pred ccccccccccccccc-c--ccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCC
Q 044931 740 ARVTTLQELYLRGSI-H--SFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFP 816 (889)
Q Consensus 740 ~~~~~L~~L~l~~~~-~--~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~ 816 (889)
..+++|+.|+++++. . ..|. ++..+ ++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.. ..+..+..++
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 223 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPD-IFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLN 223 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS-CCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCT
T ss_pred ccCcCCCEEECCCCccccccchh-HHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcc
Confidence 123445555555432 2 2454 56656 889999999998887667788889999999998877755 2233467788
Q ss_pred cccEEEccccCCCcceecccCccc-ccceeecccccCCC
Q 044931 817 QLRVLKLWNLFSLEEWTVEKGAMP-RLRELEIRSCNNLK 854 (889)
Q Consensus 817 ~L~~L~l~~~~~l~~~~~~~~~lp-~L~~L~l~~C~~L~ 854 (889)
+|+.|++++|......+..+..+| +|+.|++++ |.+.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~-N~~~ 261 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ-NDFA 261 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT-CCEE
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccC-CCee
Confidence 999999998875555666777775 899999988 6666
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.7e-19 Score=188.30 Aligned_cols=246 Identities=19% Similarity=0.143 Sum_probs=116.1
Q ss_pred eeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccc-ccccCCCCCCcEEeecCCC-cccC-chhhhhccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSL-PKSVGILPRLETLDVKHTK-LRFL-PDSIWKAKKLQHLYL 661 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L~l 661 (889)
.|+.|++++|.+..+++..|.++++|++|+|++|.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 455555555555544443455555555555555555544 3445555555555555553 4444 334455555555555
Q ss_pred ccccCCCC-CCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCc
Q 044931 662 NWIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEA 740 (889)
Q Consensus 662 ~~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~ 740 (889)
++|..... |..++.+++|++|. +..+.........++.+++|+.|+++++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------------------------- 164 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLY-LQDNALQALPDDTFRDLGNLTHLFLHGNR--------------------------- 164 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC---------------------------
T ss_pred CCCcCCEECHhHhhCCcCCCEEE-CCCCcccccCHhHhccCCCccEEECCCCc---------------------------
Confidence 55442222 22233333333331 11111111111223334444444444331
Q ss_pred cccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccE
Q 044931 741 RVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRV 820 (889)
Q Consensus 741 ~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 820 (889)
+..+|..++..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.. ..+..+..+++|+.
T Consensus 165 -------------l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 165 -------------ISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQY 229 (285)
T ss_dssp -------------CCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCE
T ss_pred -------------ccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCE
Confidence 222332134444 677777777777665556666777777777777666554 22233556777777
Q ss_pred EEccccCCCcceecccCcccccceeecccccCCCCCCCcchhh--hhcccceEEeccC
Q 044931 821 LKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQN--LTNTLKEFVLTNM 876 (889)
Q Consensus 821 L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~--l~~~L~~L~l~~c 876 (889)
|++++|+.....+. ...+..|+.+.... +.+....|..+.. +. .+...++.+|
T Consensus 230 L~l~~N~~~c~~~~-~~~~~~l~~~~~~~-~~~~c~~p~~l~g~~l~-~l~~~~l~~C 284 (285)
T 1ozn_A 230 LRLNDNPWVCDCRA-RPLWAWLQKFRGSS-SEVPCSLPQRLAGRDLK-RLAANDLQGC 284 (285)
T ss_dssp EECCSSCEECSGGG-HHHHHHHHHCCSEE-CCCBEEESGGGTTCBGG-GSCGGGSCCC
T ss_pred EeccCCCccCCCCc-HHHHHHHHhccccc-CccccCCchHhCCcChh-hcCHHHhccC
Confidence 77777763221111 01122344444444 3344345554432 33 4555555555
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=196.82 Aligned_cols=251 Identities=16% Similarity=0.145 Sum_probs=172.0
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
++|++|++++|.+.. ..+..+ . .+++|+.|++++|.++.+++..|+++++|++|+|++|.++.+|.
T Consensus 52 ~~L~~L~l~~n~i~~------------~~~~~~-~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITY------------ISNSDL-Q-RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TTCCEEECTTSCCCE------------ECTTTT-T-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred ccCcEEECCCCcCcc------------cCHHHh-c-cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 478888888887643 223334 4 78888888888888887766578888888888888888888876
Q ss_pred c-cCCCCCCcEEeecCCCcccCch--hhhhccccccccccccc-CC-CCCCCcccccccccccccccccCCCccccCCCC
Q 044931 626 S-VGILPRLETLDVKHTKLRFLPD--SIWKAKKLQHLYLNWIH-SP-IDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTK 700 (889)
Q Consensus 626 ~-i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~-~~-~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 700 (889)
. ++++++|++|++++|+++.+|. .+.++++|++|++++|. .. ..+..++.+++|++|. +..+......+..++.
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE-IDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE-EEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE-CCCCCcCccCHHHHhc
Confidence 5 7888888888888888888876 57788888888888773 33 3345667777777763 3333333444667888
Q ss_pred CCCCCeeecccCch-hhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCC
Q 044931 701 WPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRL 779 (889)
Q Consensus 701 l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l 779 (889)
+++|+.|+++++.. ......+..+++|+.|+++++.+...+.. .++ . ...++.++.++++++.+
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------------~l~--~-~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS------------ELS--T-GETNSLIKKFTFRNVKI 261 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------CCCCCCEEEEESCBC
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc------------ccc--c-ccccchhhccccccccc
Confidence 88999999988876 33333445567777777765422221000 011 0 11236777888888877
Q ss_pred CCC----CchhhhcCCCCCeEEeecCccCCCcceeC-CCCCCcccEEEccccCC
Q 044931 780 VYD----PMPLLEELAHLNILRLYRGAYLGEETTCS-SGGFPQLRVLKLWNLFS 828 (889)
Q Consensus 780 ~~~----~~~~l~~L~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 828 (889)
.+. .+..++.+++|+.|+|++|.+.. ++.. +..+++|++|++++|+.
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCc
Confidence 643 34567889999999999887763 3333 47889999999999874
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.5e-18 Score=197.20 Aligned_cols=223 Identities=17% Similarity=0.115 Sum_probs=124.7
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
+++++|++++|.+.. ..+..| . .+++|++|+|++|.+..+++..|.++.+|++|+|++|.++.+|.
T Consensus 75 ~~l~~L~L~~n~i~~------------~~~~~~-~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM------------IQADTF-R-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp TTCSEEECCSSCCCE------------ECTTTT-T-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CCccEEECcCCcCce------------ECHHHc-C-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence 456666666665532 222333 3 56666666666666655554456666666666666666665553
Q ss_pred c-cCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCC
Q 044931 626 S-VGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPR 703 (889)
Q Consensus 626 ~-i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~ 703 (889)
. +.++++|++|+|++|+++.+|. .+.++++|++|++++|. .........+..+++
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYISEGAFEGLFN 197 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECTTTTTTCTT
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccChhhccCCCC
Confidence 3 5556666666666666655554 35556666666665432 111111123444555
Q ss_pred CCeeecccCchhhHHHHHhhhcccccccceecccCC-cccccccccccccc-ccccccccccccCCCccEEEeeccCCCC
Q 044931 704 LIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE-ARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVY 781 (889)
Q Consensus 704 L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~ 781 (889)
|+.|+++++.... ++. ..+++|+.|+++++ +..++..++..+ ++|+.|+|++|.+..
T Consensus 198 L~~L~L~~n~l~~--------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 198 LKYLNLGMCNIKD--------------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSL 256 (452)
T ss_dssp CCEEECTTSCCSS--------------------CCCCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCE
T ss_pred CCEEECCCCcccc--------------------cccccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCce
Confidence 5555555442100 001 23445555555543 233322255555 778888888887776
Q ss_pred CCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccC
Q 044931 782 DPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLF 827 (889)
Q Consensus 782 ~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (889)
..+..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|+
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSC
T ss_pred ECHHHhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCC
Confidence 666677778888888888776653 333345667788888887776
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=6.5e-19 Score=201.41 Aligned_cols=235 Identities=15% Similarity=0.052 Sum_probs=145.1
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.+++|+.|+|++|.+..+++..|+++++|++|+|++|.+..+++ ++.+++|++|+|++|.++.+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 66799999999999999887789999999999999999987765 9999999999999999998874 388999999
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCCc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGEA 740 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~~ 740 (889)
++|.....+.. . +++|+.|+++++.. ...+..+ .
T Consensus 107 ~~N~l~~~~~~--~-------------------------l~~L~~L~L~~N~l~~~~~~~~------------------~ 141 (487)
T 3oja_A 107 ANNNISRVSCS--R-------------------------GQGKKNIYLANNKITMLRDLDE------------------G 141 (487)
T ss_dssp CSSCCCCEEEC--C-------------------------CSSCEEEECCSSCCCSGGGBCG------------------G
T ss_pred cCCcCCCCCcc--c-------------------------cCCCCEEECCCCCCCCCCchhh------------------c
Confidence 98764433211 1 23344445444421 1000000 1
Q ss_pred ccccccccccccc-ccc-cccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcc
Q 044931 741 RVTTLQELYLRGS-IHS-FFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQL 818 (889)
Q Consensus 741 ~~~~L~~L~l~~~-~~~-~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L 818 (889)
.+++|+.|+++++ +.. .|. ++...+++|+.|+|++|.+++. +....+++|+.|+|++|.+.+ ++..+..+++|
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L 216 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGV 216 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTC
T ss_pred CCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC--CCHhHcCCCCc
Confidence 2233444444432 222 232 3332226666666666665432 333456666666666665543 22235556666
Q ss_pred cEEEccccCCCcceecccCcccccceeecccccCCC-CCCCcchhhhhcccceEEec
Q 044931 819 RVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLK-PPQPQGLQNLTNTLKEFVLT 874 (889)
Q Consensus 819 ~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~-~~lp~~l~~l~~~L~~L~l~ 874 (889)
+.|++++|. +..+|..++.+++|+.|++++ |.+. +.+|..+..++ .|+.+.+.
T Consensus 217 ~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~-N~l~c~~~~~~~~~l~-~L~~l~~~ 270 (487)
T 3oja_A 217 TWISLRNNK-LVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQ-RVQTVAKQ 270 (487)
T ss_dssp SEEECTTSC-CCEECTTCCCCTTCCEEECTT-CCBCHHHHHHHHTTCH-HHHHHHHH
T ss_pred cEEEecCCc-CcccchhhccCCCCCEEEcCC-CCCcCcchHHHHHhCC-CCcEEecc
Confidence 666666665 445665566666666666666 3333 24445555555 55555553
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.8e-18 Score=196.59 Aligned_cols=224 Identities=23% Similarity=0.190 Sum_probs=137.7
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCchh-hhhccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYL 661 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 661 (889)
++|+.|+|++|.+..+++..|+++++|++|+|++|.+..++ ..+.++++|++|+|++|+++.+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57888888888888776667888888888888888888665 6788888888888888888888765 677888888888
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEAR 741 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~ 741 (889)
++|....+|. ..+..+++|+.|++.++..
T Consensus 155 ~~N~l~~~~~------------------------~~~~~l~~L~~L~l~~~~~--------------------------- 183 (452)
T 3zyi_A 155 RNNPIESIPS------------------------YAFNRVPSLMRLDLGELKK--------------------------- 183 (452)
T ss_dssp CSCCCCEECT------------------------TTTTTCTTCCEEECCCCTT---------------------------
T ss_pred CCCCcceeCH------------------------hHHhcCCcccEEeCCCCCC---------------------------
Confidence 8765332221 2234555566666554310
Q ss_pred ccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 742 VTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 742 ~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
+..++...+..+ ++|+.|+|++|.+.. .+.+..+++|+.|+|++|.+.. ..+..+.++++|+.|
T Consensus 184 ------------l~~i~~~~~~~l-~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 247 (452)
T 3zyi_A 184 ------------LEYISEGAFEGL-FNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKL 247 (452)
T ss_dssp ------------CCEECTTTTTTC-TTCCEEECTTSCCSS--CCCCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEE
T ss_pred ------------ccccChhhccCC-CCCCEEECCCCcccc--cccccccccccEEECcCCcCcc-cCcccccCccCCCEE
Confidence 011111122233 556666666665542 2345556666666666555443 223345556666666
Q ss_pred EccccCCCcceecccCcccccceeecccccCCCCCCCc-chhhhhcccceEEeccCc
Q 044931 822 KLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQ-GLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 822 ~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~-~l~~l~~~L~~L~l~~cp 877 (889)
++++|......+..+..+++|+.|+|++ |+++ .+|. .+..++ +|+.|+|+++|
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~-~~~~~~~~~l~-~L~~L~L~~Np 301 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAH-NNLS-SLPHDLFTPLR-YLVELHLHHNP 301 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCS-SCCS-CCCTTSSTTCT-TCCEEECCSSC
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCC-CcCC-ccChHHhcccc-CCCEEEccCCC
Confidence 6666653222344455566666666666 5565 4443 345555 66666666543
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=195.49 Aligned_cols=222 Identities=15% Similarity=0.107 Sum_probs=132.7
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
++++.|++.+|.+.. ..+..| . .+++|++|+|++|.+..+++..|.++.+|++|+|++|.++.+|.
T Consensus 64 ~~l~~L~L~~n~i~~------------~~~~~~-~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI------------IKVNSF-K-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp TTCSEEECCSCCCCE------------ECTTTT-S-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CCCcEEEccCCcCCe------------eCHHHh-h-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 566666666666542 222333 3 66666677777666666665566666667777776666666654
Q ss_pred -ccCCCCCCcEEeecCCCcccCch-hhhhccccccccccccc-CCCCCCCcccccccccccccccccCCCccccCCCCCC
Q 044931 626 -SVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIH-SPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWP 702 (889)
Q Consensus 626 -~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~-~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 702 (889)
.+..+++|++|+|++|.++.+|. .+.++++|++|++++|. .... ....+..++
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i------------------------~~~~~~~l~ 185 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI------------------------SEGAFEGLS 185 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE------------------------CTTTTTTCS
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee------------------------Ccchhhccc
Confidence 46666667777776666666654 45566666666666532 1111 112234445
Q ss_pred CCCeeecccCchhhHHHHHhhhcccccccceecccCC-cccccccccccccc-ccccccccccccCCCccEEEeeccCCC
Q 044931 703 RLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGE-ARVTTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLV 780 (889)
Q Consensus 703 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-~~~~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~ 780 (889)
+|+.|+++++.... ++. ..+++|+.|+++++ +..++...+..+ ++|+.|+|++|.+.
T Consensus 186 ~L~~L~L~~n~l~~--------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 186 NLRYLNLAMCNLRE--------------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQ 244 (440)
T ss_dssp SCCEEECTTSCCSS--------------------CCCCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCC
T ss_pred ccCeecCCCCcCcc--------------------ccccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCcee
Confidence 55555555442100 000 23445555555543 233322255555 88888888888887
Q ss_pred CCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccC
Q 044931 781 YDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLF 827 (889)
Q Consensus 781 ~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (889)
...+..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|+
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSC
T ss_pred EEChhhhcCCCCCCEEECCCCCCCc-cChhHhccccCCCEEEcCCCC
Confidence 7667777888888888888776654 333445677888888888876
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=193.68 Aligned_cols=224 Identities=21% Similarity=0.191 Sum_probs=137.7
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCch-hhhhccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYL 661 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l 661 (889)
+++++|+|++|.+..+++..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|+++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56788888888888777667888888888888888888665 568888888888888888888876 4777888888888
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEAR 741 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~ 741 (889)
++|.....+. ..+..+++|+.|++.++..
T Consensus 144 ~~N~i~~~~~------------------------~~~~~l~~L~~L~l~~~~~--------------------------- 172 (440)
T 3zyj_A 144 RNNPIESIPS------------------------YAFNRIPSLRRLDLGELKR--------------------------- 172 (440)
T ss_dssp CSCCCCEECT------------------------TTTTTCTTCCEEECCCCTT---------------------------
T ss_pred CCCcccccCH------------------------HHhhhCcccCEeCCCCCCC---------------------------
Confidence 8765332221 1234445555555544310
Q ss_pred ccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 742 VTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 742 ~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
+..++...+..+ ++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+.. ..+..+.++++|+.|
T Consensus 173 ------------l~~i~~~~~~~l-~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 173 ------------LSYISEGAFEGL-SNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKL 236 (440)
T ss_dssp ------------CCEECTTTTTTC-SSCCEEECTTSCCSS--CCCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEE
T ss_pred ------------cceeCcchhhcc-cccCeecCCCCcCcc--ccccCCCcccCEEECCCCccCc-cChhhhccCccCCEE
Confidence 111121123333 666666666666542 2345666666666666555433 223445566666666
Q ss_pred EccccCCCcceecccCcccccceeecccccCCCCCCCc-chhhhhcccceEEeccCc
Q 044931 822 KLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQ-GLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 822 ~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~-~l~~l~~~L~~L~l~~cp 877 (889)
++++|......+..+..+++|+.|+|++ |+++ .+|. .+..++ +|+.|+|+++|
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~-~~~~~~~~~l~-~L~~L~L~~Np 290 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAH-NNLT-LLPHDLFTPLH-HLERIHLHHNP 290 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTT-SCCC-CCCTTTTSSCT-TCCEEECCSSC
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCC-CCCC-ccChhHhcccc-CCCEEEcCCCC
Confidence 6666653222244455666666666666 5566 4443 345566 66666666643
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=2.8e-19 Score=192.58 Aligned_cols=247 Identities=16% Similarity=0.128 Sum_probs=160.8
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccC--CCChHHhc-------cccCCcE
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKL--KLSDDVIG-------KLLNLRY 612 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~l~~~~i~-------~l~~Lr~ 612 (889)
....++|+.|.+.+|.+ . .+..+. . .|+.|+|++|.+. .++. .+. ++.+|++
T Consensus 39 ~~~~~~L~~l~l~~n~l-~------------~p~~~~---~--~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~ 99 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-A------------DLGQFT---D--IIKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQE 99 (312)
T ss_dssp EEEEEECTTHHHHCCTT-C------------CCHHHH---H--HHHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCE
T ss_pred EccCCCceeEeeccccc-c------------cHHHHH---H--HHhhcccccccccCCCcCH-HHHHHHHHhcCcCCccE
Confidence 56677888988888887 3 222333 2 2788889988875 3555 554 7899999
Q ss_pred EeCCCCCCc-cccccc--CCCCCCcEEeecCCCcccCchhhhhc-----ccccccccccccCCCCCCCcccccccccccc
Q 044931 613 LGLRSTFID-SLPKSV--GILPRLETLDVKHTKLRFLPDSIWKA-----KKLQHLYLNWIHSPIDGLSLSSLNNLQTLWG 684 (889)
Q Consensus 613 L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~ 684 (889)
|+|++|.++ .+|..+ +.+++|++|++++|.++.+|..+..+ ++|++|++++|.....+
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-------------- 165 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-------------- 165 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC--------------
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch--------------
Confidence 999999988 688776 88999999999999999888888887 88999999887643332
Q ss_pred cccccCCCccccCCCCCCCCCeeecccCch-hhHHHHHhhhcccccccceecccCCcccccccccccccccccccc-ccc
Q 044931 685 LSIESYTPFRQSDSTKWPRLIKLGVKCDSQ-MAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFD-YGI 762 (889)
Q Consensus 685 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~-~~~ 762 (889)
...++.+++|+.|+++++.. .... +|. ..+
T Consensus 166 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------------------~~~~~~~ 197 (312)
T 1wwl_A 166 ----------CEQVRVFPALSTLDLSDNPELGERG--------------------------------------LISALCP 197 (312)
T ss_dssp ----------TTTCCCCSSCCEEECCSCTTCHHHH--------------------------------------HHHHSCT
T ss_pred ----------HHHhccCCCCCEEECCCCCcCcchH--------------------------------------HHHHHHh
Confidence 12334455556666655532 1100 010 011
Q ss_pred cccCCCccEEEeeccCCCCC---CchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcc
Q 044931 763 EWNYPNLKILTLSMSRLVYD---PMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAM 839 (889)
Q Consensus 763 ~~~~~~L~~L~L~~~~l~~~---~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 839 (889)
..+ ++|+.|++++|.+... ....+..+++|+.|+|++|.+.+.........+++|++|++++|. +..+|..+.
T Consensus 198 ~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~-- 273 (312)
T 1wwl_A 198 LKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP-- 273 (312)
T ss_dssp TSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--
T ss_pred ccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--
Confidence 223 6677777777766521 112234667777777776666553322334456777777777776 456665544
Q ss_pred cccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 840 PRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 840 p~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
++|+.|++++ |+++ .+|. +..++ +|+.|+++++|
T Consensus 274 ~~L~~L~Ls~-N~l~-~~p~-~~~l~-~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSY-NRLD-RNPS-PDELP-QVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCS-SCCC-SCCC-TTTSC-EEEEEECTTCT
T ss_pred CCceEEECCC-CCCC-CChh-HhhCC-CCCEEeccCCC
Confidence 6777777777 6677 5565 67777 77777777765
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.3e-18 Score=187.71 Aligned_cols=237 Identities=15% Similarity=0.075 Sum_probs=138.3
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCchhhhhcccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLN 662 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 662 (889)
..++.++++++.+...+...+..+++|++|+|++|.++.++ ..++++++|++|+|++|.++.++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45778888888887766656778889999999999999776 689999999999999999987775 8899999999999
Q ss_pred cccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccc
Q 044931 663 WIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARV 742 (889)
Q Consensus 663 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~ 742 (889)
+|....++ ..++|++|. +..+...... ...+++|+.|+++++.
T Consensus 89 ~n~l~~l~----~~~~L~~L~-l~~n~l~~~~---~~~~~~L~~L~l~~N~----------------------------- 131 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLH-AANNNISRVS---CSRGQGKKNIYLANNK----------------------------- 131 (317)
T ss_dssp SSEEEEEE----ECTTCCEEE-CCSSCCSEEE---ECCCSSCEEEECCSSC-----------------------------
T ss_pred CCcccccc----CCCCcCEEE-CCCCccCCcC---ccccCCCCEEECCCCC-----------------------------
Confidence 87643322 224444442 1111111111 1123444444444432
Q ss_pred cccccccccccccccccccccccCCCccEEEeeccCCCCCCchhh-hcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 743 TTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLL-EELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 743 ~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
+..++...+..+ ++|+.|++++|.+....+..+ ..+++|++|+|++|.+... .....+++|+.|
T Consensus 132 -----------l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L 196 (317)
T 3o53_A 132 -----------ITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTL 196 (317)
T ss_dssp -----------CCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEE
T ss_pred -----------CCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEE
Confidence 122222133333 555555555555544333333 2455555555555544321 122235555555
Q ss_pred EccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 822 KLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 822 ~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
++++|. +..++..+..+++|+.|++++ |+++ .+|..+..++ +|+.|+++++|
T Consensus 197 ~Ls~N~-l~~l~~~~~~l~~L~~L~L~~-N~l~-~l~~~~~~l~-~L~~L~l~~N~ 248 (317)
T 3o53_A 197 DLSSNK-LAFMGPEFQSAAGVTWISLRN-NKLV-LIEKALRFSQ-NLEHFDLRGNG 248 (317)
T ss_dssp ECCSSC-CCEECGGGGGGTTCSEEECTT-SCCC-EECTTCCCCT-TCCEEECTTCC
T ss_pred ECCCCc-CCcchhhhcccCcccEEECcC-Cccc-chhhHhhcCC-CCCEEEccCCC
Confidence 555554 344444455555555555555 4455 4555555555 55555555544
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.9e-19 Score=210.99 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCcccEEEccccCCCc-ceecccCcccccceeecccccCCCCC-CCcchhhhhcccceEEeccCc
Q 044931 815 FPQLRVLKLWNLFSLE-EWTVEKGAMPRLRELEIRSCNNLKPP-QPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 815 ~~~L~~L~l~~~~~l~-~~~~~~~~lp~L~~L~l~~C~~L~~~-lp~~l~~l~~~L~~L~l~~cp 877 (889)
+|+|+.|++++|.... .++.....+++|+.|+|++|+ +++. ++..+..++ +|+.|++++|+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~-~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLP-SLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCS-SCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcC-ccCeeECcCCc
Confidence 4555555555554221 122233445555555555544 3311 222334455 55555555554
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.5e-19 Score=211.59 Aligned_cols=337 Identities=10% Similarity=-0.031 Sum_probs=230.3
Q ss_pred ceeeeeeeeCCCCCcCCCcccc-ccc-cceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC
Q 044931 523 AVRRLATYLGVSTNFIPSEWSW-SWH-LRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS 600 (889)
Q Consensus 523 ~~r~lsl~~~~~~~~~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~ 600 (889)
..+.+.+..+......+..+.. +++ |++|.+.++... ... .+..+. . .+++|++|+|++|.+....
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~--------~l~~~~-~-~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTD--------GLLSIV-T-HCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHH--------HHHHHH-H-HCTTCSEEECTTCEEECCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHH--------HHHHHH-h-hCCCCCEEECccccccCcc
Confidence 4566666633222211222233 334 999999887631 111 233344 4 7889999999999876542
Q ss_pred ----hHHhccccCCcEEeCCCCCCc-----ccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCC----
Q 044931 601 ----DDVIGKLLNLRYLGLRSTFID-----SLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSP---- 667 (889)
Q Consensus 601 ----~~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~---- 667 (889)
+..+..+++|++|+|++|.++ .++..+.++++|++|++++|.+..+|..+.++++|++|+++.+...
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchH
Confidence 225678899999999999875 4556677899999999999999999999999999999999864322
Q ss_pred CCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch--hhHHHHHhhhcccccccceec----ccCC--
Q 044931 668 IDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ--MAIEFIINLLVCARTDGLVEI----EYGE-- 739 (889)
Q Consensus 668 ~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~l~~~l~~l~~L~~L~l~~~----~l~~-- 739 (889)
..+..++.+++|+.|....+. ....+..+..+++|+.|+++++.. ..+...+..+++|+.|.+.++ .+..
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 233455666666666322221 233445567889999999999885 555566788999999999854 1222
Q ss_pred ccccccccccccc----------c--ccc--cccccccccCCCccEEEeeccCCCCCCchhhhc-CCCCCeEEee----c
Q 044931 740 ARVTTLQELYLRG----------S--IHS--FFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEE-LAHLNILRLY----R 800 (889)
Q Consensus 740 ~~~~~L~~L~l~~----------~--~~~--~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-L~~L~~L~L~----~ 800 (889)
..+++|++|++++ + +.. ++ .+...+++|++|+++.+.+++..+..++. +++|+.|++. .
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI--ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHH--HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 4578899999993 2 221 22 22233599999999888888777777776 9999999997 3
Q ss_pred CccCCC----cceeCCCCCCcccEEEccccCC-Cc-ceecc-cCcccccceeecccccCCCC-CCCcchhhhhcccceEE
Q 044931 801 GAYLGE----ETTCSSGGFPQLRVLKLWNLFS-LE-EWTVE-KGAMPRLRELEIRSCNNLKP-PQPQGLQNLTNTLKEFV 872 (889)
Q Consensus 801 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~-l~-~~~~~-~~~lp~L~~L~l~~C~~L~~-~lp~~l~~l~~~L~~L~ 872 (889)
|.+.+. .+.....++++|+.|++++|.. +. ..... ...+|+|+.|++++ +++++ .++..+..++ +|+.|+
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~-~L~~L~ 494 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY-VGESDEGLMEFSRGCP-NLQKLE 494 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS-CCSSHHHHHHHHTCCT-TCCEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC-CCCCHHHHHHHHhcCc-ccCeee
Confidence 344331 1222345689999999987653 22 12222 23489999999998 55762 2444556788 999999
Q ss_pred eccCc
Q 044931 873 LTNMP 877 (889)
Q Consensus 873 l~~cp 877 (889)
|++|+
T Consensus 495 l~~n~ 499 (592)
T 3ogk_B 495 MRGCC 499 (592)
T ss_dssp EESCC
T ss_pred ccCCC
Confidence 99998
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.4e-17 Score=173.89 Aligned_cols=76 Identities=14% Similarity=-0.014 Sum_probs=66.7
Q ss_pred eEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccC-chhhhhcccccccccccc
Q 044931 587 TVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFL-PDSIWKAKKLQHLYLNWI 664 (889)
Q Consensus 587 r~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~ 664 (889)
++++++++.++.+|. .+ ..+|++|+|++|.++.+| ..+.++++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678999999998887 33 569999999999999887 5689999999999999999987 667899999999999987
Q ss_pred c
Q 044931 665 H 665 (889)
Q Consensus 665 ~ 665 (889)
.
T Consensus 91 ~ 91 (285)
T 1ozn_A 91 A 91 (285)
T ss_dssp T
T ss_pred C
Confidence 5
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.2e-18 Score=197.12 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=172.0
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
..+++|++|++++|.+.. ..+..+ . .+++|++|+|++|.++..++ ++.+++|++|+|++|.++.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~------------~~~~~~-~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQ------------ISAADL-A-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94 (487)
T ss_dssp TTGGGCCEEECCSSCCCC------------CCGGGG-T-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE
T ss_pred ccCCCccEEEeeCCcCCC------------CCHHHH-h-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC
Confidence 355689999999998864 333344 5 89999999999999887665 8899999999999999988
Q ss_pred cccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCC-CCCcccccccccccccccccCCCccccCCC-C
Q 044931 623 LPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDST-K 700 (889)
Q Consensus 623 lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~-~ 700 (889)
+|.. ++|++|++++|.++.+|.. .+++|++|++++|..... |..++.+++|+.|. +..+...+..+..+. .
T Consensus 95 l~~~----~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 95 LLVG----PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD-LKLNEIDTVNFAELAAS 167 (487)
T ss_dssp EEEC----TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE-CTTSCCCEEEGGGGGGG
T ss_pred CCCC----CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE-CCCCCCCCcChHHHhhh
Confidence 8743 8899999999999888753 478899999998875433 44555555555552 222222222222222 3
Q ss_pred CCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCC
Q 044931 701 WPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLV 780 (889)
Q Consensus 701 l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~ 780 (889)
+++|+.|+++++ .+..+|. ... +++|+.|+|++|.++
T Consensus 168 l~~L~~L~Ls~N----------------------------------------~l~~~~~--~~~-l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 168 SDTLEHLNLQYN----------------------------------------FIYDVKG--QVV-FAKLKTLDLSSNKLA 204 (487)
T ss_dssp TTTCCEEECTTS----------------------------------------CCCEEEC--CCC-CTTCCEEECCSSCCC
T ss_pred CCcccEEecCCC----------------------------------------ccccccc--ccc-CCCCCEEECCCCCCC
Confidence 344444444333 1233332 222 389999999999987
Q ss_pred CCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCC-cceecccCcccccceeecccccCCC
Q 044931 781 YDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSL-EEWTVEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 781 ~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~lp~L~~L~l~~C~~L~ 854 (889)
+ .++.++.+++|+.|+|++|.+.+ ++..+..+++|+.|++++|+.. ..+|..+..++.|+.|.+..+..+.
T Consensus 205 ~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~ 276 (487)
T 3oja_A 205 F-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (487)
T ss_dssp E-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred C-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccccccc
Confidence 5 44558899999999999888764 5556778899999999999855 3566778889999999887544444
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=3.9e-18 Score=183.60 Aligned_cols=254 Identities=16% Similarity=0.100 Sum_probs=171.5
Q ss_pred eeeeeeeeCCCCCcCCCccccccccceeEeecccccCC-chhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCC-CCh
Q 044931 524 VRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGS-PAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLK-LSD 601 (889)
Q Consensus 524 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-l~~ 601 (889)
.+.+.+..+.. ..+..+... |+.|.+.+|.+... ...... ...-... .+++|++|+|++|.+.. +|.
T Consensus 45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~----~~~~~~~---~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRIL----FGALRVL---GISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHH----HHHHHHH---TTSCCCEEEEEEEBCBSCCCC
T ss_pred ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHH----HHHHHhc---CcCCccEEEccCCcccchhHH
Confidence 45555553333 223333333 99999999887321 111000 0011122 68899999999999984 555
Q ss_pred HHh--ccccCCcEEeCCCCCCcccccccCCC-----CCCcEEeecCCCcccCc-hhhhhcccccccccccccCCCCCCCc
Q 044931 602 DVI--GKLLNLRYLGLRSTFIDSLPKSVGIL-----PRLETLDVKHTKLRFLP-DSIWKAKKLQHLYLNWIHSPIDGLSL 673 (889)
Q Consensus 602 ~~i--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~i 673 (889)
.+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|++..+| ..++++++|++|++++|..... +
T Consensus 114 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~ 189 (312)
T 1wwl_A 114 -PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE---R 189 (312)
T ss_dssp -CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH---H
T ss_pred -HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc---h
Confidence 55 89999999999999999889888877 99999999999999887 6789999999999998752110 0
Q ss_pred ccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcccccccccccccc
Q 044931 674 SSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS 753 (889)
Q Consensus 674 ~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~ 753 (889)
+. . ....++.+++|+.|+++++....+
T Consensus 190 ~~------~-----------~~~~~~~l~~L~~L~L~~N~l~~~------------------------------------ 216 (312)
T 1wwl_A 190 GL------I-----------SALCPLKFPTLQVLALRNAGMETP------------------------------------ 216 (312)
T ss_dssp HH------H-----------HHSCTTSCTTCCEEECTTSCCCCH------------------------------------
T ss_pred HH------H-----------HHHHhccCCCCCEEECCCCcCcch------------------------------------
Confidence 00 0 000124566677777766532100
Q ss_pred ccccccccccccCCCccEEEeeccCCCCCC-chhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcce
Q 044931 754 IHSFFDYGIEWNYPNLKILTLSMSRLVYDP-MPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEW 832 (889)
Q Consensus 754 ~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 832 (889)
..++. ++...+++|+.|++++|.+.+.. .+.+..+++|+.|+|++|.+. .++.... ++|++|++++|. +..+
T Consensus 217 -~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~-l~~~ 289 (312)
T 1wwl_A 217 -SGVCS-ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNR-LDRN 289 (312)
T ss_dssp -HHHHH-HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSC-CCSC
T ss_pred -HHHHH-HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCC-CCCC
Confidence 01121 22112378888888888887654 355667889999999988776 3343333 899999999987 5666
Q ss_pred ecccCcccccceeecccccCCC
Q 044931 833 TVEKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 833 ~~~~~~lp~L~~L~l~~C~~L~ 854 (889)
|. +..+++|+.|++++ |.++
T Consensus 290 p~-~~~l~~L~~L~L~~-N~l~ 309 (312)
T 1wwl_A 290 PS-PDELPQVGNLSLKG-NPFL 309 (312)
T ss_dssp CC-TTTSCEEEEEECTT-CTTT
T ss_pred hh-HhhCCCCCEEeccC-CCCC
Confidence 66 78899999999998 7776
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=2e-19 Score=205.39 Aligned_cols=315 Identities=17% Similarity=0.048 Sum_probs=175.5
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCC-----CChHHhccccCCcEEeCCCCC
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLK-----LSDDVIGKLLNLRYLGLRSTF 619 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----l~~~~i~~l~~Lr~L~L~~~~ 619 (889)
.++|++|+++++.+... .+..++ . .+++|++|++++|.+.. ++. .+..+++|++|+|++|.
T Consensus 2 ~~~l~~L~Ls~~~l~~~-----------~~~~~~-~-~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~ 67 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDA-----------RWAELL-P-LLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNE 67 (461)
T ss_dssp CEEEEEEEEESCCCCHH-----------HHHHHH-H-HHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCC
T ss_pred CccceehhhhhcccCch-----------hHHHHH-h-hcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCc
Confidence 35789999998887421 233434 5 88899999999999873 344 78889999999999998
Q ss_pred Cccc-cccc-CCCC----CCcEEeecCCCcc-----cCchhhhhcccccccccccccCCCC-CCCc-----ccccccccc
Q 044931 620 IDSL-PKSV-GILP----RLETLDVKHTKLR-----FLPDSIWKAKKLQHLYLNWIHSPID-GLSL-----SSLNNLQTL 682 (889)
Q Consensus 620 i~~l-p~~i-~~L~----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~-~~~i-----~~l~~L~~L 682 (889)
+... +..+ ..+. +|++|++++|.+. .+|..+.++++|++|++++|..... +..+ ...++|++|
T Consensus 68 l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 147 (461)
T 1z7x_W 68 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147 (461)
T ss_dssp CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE
Confidence 8742 2222 3344 7999999999888 4678889999999999998763211 1111 113345555
Q ss_pred cccccccCCCc----cccCCCCCCCCCeeecccCch-hhHHHHHh-----hhcccccccceecccCC----------ccc
Q 044931 683 WGLSIESYTPF----RQSDSTKWPRLIKLGVKCDSQ-MAIEFIIN-----LLVCARTDGLVEIEYGE----------ARV 742 (889)
Q Consensus 683 ~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~-----~l~~L~~L~l~~~~l~~----------~~~ 742 (889)
.. ..+..... ....+..+++|+.|+++++.. ......+. ..++|+.|+++++.+.. ..+
T Consensus 148 ~L-~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 148 QL-EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp EC-TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred EC-CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 32 21211111 122334456666666666653 22111111 12355555555442211 123
Q ss_pred cccccccccccc-cc-----cccccccccCCCccEEEeeccCCCCC----CchhhhcCCCCCeEEee-------------
Q 044931 743 TTLQELYLRGSI-HS-----FFDYGIEWNYPNLKILTLSMSRLVYD----PMPLLEELAHLNILRLY------------- 799 (889)
Q Consensus 743 ~~L~~L~l~~~~-~~-----~p~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~L~~L~~L~L~------------- 799 (889)
++|+.|+++++. .. +.. .+...+++|+.|++++|.++.. .+..+..+++|+.|+++
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCP-GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHH-HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHH-HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 455555555421 11 101 1111124555555555544432 12233344455555554
Q ss_pred ----------------cCccCCCc---ceeCCCCCCcccEEEccccCCCcceecccC-----cccccceeecccccCCCC
Q 044931 800 ----------------RGAYLGEE---TTCSSGGFPQLRVLKLWNLFSLEEWTVEKG-----AMPRLRELEIRSCNNLKP 855 (889)
Q Consensus 800 ----------------~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~lp~L~~L~l~~C~~L~~ 855 (889)
+|.+.... ++..+..+++|+.|++++|......+..+. .+++|+.|++++ +++++
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~i~~ 384 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD-CDVSD 384 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCCH
T ss_pred HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC-CCCCh
Confidence 44433221 112223446777777777652221111111 156788888887 45653
Q ss_pred ----CCCcchhhhhcccceEEeccCc
Q 044931 856 ----PQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 856 ----~lp~~l~~l~~~L~~L~l~~cp 877 (889)
.+|..+..++ +|++|++++|+
T Consensus 385 ~~~~~l~~~l~~~~-~L~~L~l~~N~ 409 (461)
T 1z7x_W 385 SSCSSLAATLLANH-SLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHCC-CCCEEECCSSS
T ss_pred hhHHHHHHHHHhCC-CccEEECCCCC
Confidence 4566677777 88888888876
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.9e-16 Score=169.92 Aligned_cols=198 Identities=17% Similarity=0.130 Sum_probs=144.3
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.+++|+.|++++|.+..++ .+..+++|++|+|++|.+..+|. +..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 5677888888888877765 47788888888888888887776 888888888888888887775 5777888888888
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEAR 741 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~ 741 (889)
++|.....+. +..+++|+.|+++++.
T Consensus 115 ~~n~l~~~~~--------------------------l~~l~~L~~L~l~~n~---------------------------- 140 (308)
T 1h6u_A 115 TSTQITDVTP--------------------------LAGLSNLQVLYLDLNQ---------------------------- 140 (308)
T ss_dssp TTSCCCCCGG--------------------------GTTCTTCCEEECCSSC----------------------------
T ss_pred CCCCCCCchh--------------------------hcCCCCCCEEECCCCc----------------------------
Confidence 7764332211 2333444444544431
Q ss_pred ccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 742 VTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 742 ~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
+..++ .+..+ ++|+.|++++|.+.+. +.+..+++|+.|++++|.+.... .+..+++|+.|
T Consensus 141 ------------l~~~~--~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L 200 (308)
T 1h6u_A 141 ------------ITNIS--PLAGL-TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS---PLASLPNLIEV 200 (308)
T ss_dssp ------------CCCCG--GGGGC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEE
T ss_pred ------------cCcCc--cccCC-CCccEEEccCCcCCCC--hhhcCCCCCCEEECCCCccCcCh---hhcCCCCCCEE
Confidence 11222 23334 8999999999998743 33899999999999988876532 26789999999
Q ss_pred EccccCCCcceecccCcccccceeecccccCCCCCCCcch
Q 044931 822 KLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGL 861 (889)
Q Consensus 822 ~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l 861 (889)
++++|. +..++ .+..+++|+.|++++ +.++ ..|..+
T Consensus 201 ~L~~N~-l~~~~-~l~~l~~L~~L~l~~-N~i~-~~~~~~ 236 (308)
T 1h6u_A 201 HLKNNQ-ISDVS-PLANTSNLFIVTLTN-QTIT-NQPVFY 236 (308)
T ss_dssp ECTTSC-CCBCG-GGTTCTTCCEEEEEE-EEEE-CCCEEC
T ss_pred EccCCc-cCccc-cccCCCCCCEEEccC-Ceee-cCCeee
Confidence 999997 56665 378899999999999 6688 666543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=4.3e-17 Score=171.67 Aligned_cols=207 Identities=19% Similarity=0.146 Sum_probs=143.4
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchh-hhhcccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLY 660 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~ 660 (889)
.++.|+.|++++|.+..++ .++.+++|++|+|++|.+..+| .++++++|++|++++|.++.+|.. +.++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 6778888888888887665 4788888888888888888775 788888888888888888877754 57788888888
Q ss_pred cccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCc
Q 044931 661 LNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEA 740 (889)
Q Consensus 661 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~ 740 (889)
+++|.....+.. .++.+++|+.|+++++.
T Consensus 116 L~~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~--------------------------- 144 (272)
T 3rfs_A 116 LVENQLQSLPDG------------------------VFDKLTNLTYLNLAHNQ--------------------------- 144 (272)
T ss_dssp CTTSCCCCCCTT------------------------TTTTCTTCCEEECCSSC---------------------------
T ss_pred CCCCcCCccCHH------------------------HhccCCCCCEEECCCCc---------------------------
Confidence 887654333221 12334444444444331
Q ss_pred cccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccE
Q 044931 741 RVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRV 820 (889)
Q Consensus 741 ~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 820 (889)
+..+|..++..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+ ..+..+..+++|+.
T Consensus 145 -------------l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 145 -------------LQSLPKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQY 209 (272)
T ss_dssp -------------CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCE
T ss_pred -------------cCccCHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCE
Confidence 122232133444 788888888888776555567788888888888777654 33344567888888
Q ss_pred EEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhh
Q 044931 821 LKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLT 865 (889)
Q Consensus 821 L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~ 865 (889)
|++++|+. .+.+|+|+.|.++. +++.|.+|..++.++
T Consensus 210 L~l~~N~~-------~~~~~~l~~l~~~~-n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 210 IWLHDNPW-------DCTCPGIRYLSEWI-NKHSGVVRNSAGSVA 246 (272)
T ss_dssp EECCSSCB-------CCCTTTTHHHHHHH-HHTGGGBBCTTSCBC
T ss_pred EEccCCCc-------cccCcHHHHHHHHH-HhCCCcccCcccccC
Confidence 88888762 24577788888877 667767787776665
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=3e-16 Score=166.56 Aligned_cols=85 Identities=20% Similarity=0.022 Sum_probs=52.1
Q ss_pred CCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccceee
Q 044931 767 PNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLRELE 846 (889)
Q Consensus 767 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~ 846 (889)
++|+.|+|++|.+...+...+..+++|+.|+|++|.+.. .....+..+++|+.|++++|. +..+|..+..+++|+.|+
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEE
T ss_pred CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEE
Confidence 667777777776665555556667777777777665543 222234556667777776665 456666666666666666
Q ss_pred cccccCCC
Q 044931 847 IRSCNNLK 854 (889)
Q Consensus 847 l~~C~~L~ 854 (889)
+++ |.+.
T Consensus 202 L~~-Np~~ 208 (290)
T 1p9a_G 202 LHG-NPWL 208 (290)
T ss_dssp CCS-CCBC
T ss_pred eCC-CCcc
Confidence 666 4343
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=5.4e-16 Score=163.07 Aligned_cols=199 Identities=21% Similarity=0.232 Sum_probs=132.4
Q ss_pred eeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCchhh-hhcccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLPDSI-WKAKKLQHLYLN 662 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~l~ 662 (889)
.++.++++++.++.+|. .+. .+|++|+|++|.++.+|. .+.++++|++|++++|.++.+|..+ .++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 35677777777777766 443 467777777777777664 6777777777777777777777653 567777777777
Q ss_pred cccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccc
Q 044931 663 WIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARV 742 (889)
Q Consensus 663 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~ 742 (889)
+|.....|. ..+..+++|+.|+++++.
T Consensus 94 ~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n~----------------------------- 120 (270)
T 2o6q_A 94 DNKLQALPI------------------------GVFDQLVNLAELRLDRNQ----------------------------- 120 (270)
T ss_dssp SSCCCCCCT------------------------TTTTTCSSCCEEECCSSC-----------------------------
T ss_pred CCcCCcCCH------------------------hHcccccCCCEEECCCCc-----------------------------
Confidence 654332221 112233334444443321
Q ss_pred cccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEE
Q 044931 743 TTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLK 822 (889)
Q Consensus 743 ~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 822 (889)
+..+|...+..+ ++|+.|+|++|.+...+...++.+++|+.|+|++|.+.. ..+..+..+++|+.|+
T Consensus 121 -----------l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 121 -----------LKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLK 187 (270)
T ss_dssp -----------CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEE
T ss_pred -----------cCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEE
Confidence 112222134445 889999999998886666668889999999999777654 3333467788999999
Q ss_pred ccccCCCcceec-ccCcccccceeecccccCCC
Q 044931 823 LWNLFSLEEWTV-EKGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 823 l~~~~~l~~~~~-~~~~lp~L~~L~l~~C~~L~ 854 (889)
+++|. +..++. .+..+++|+.|++++ |.+.
T Consensus 188 L~~N~-l~~~~~~~~~~l~~L~~L~l~~-N~~~ 218 (270)
T 2o6q_A 188 LDNNQ-LKRVPEGAFDSLEKLKMLQLQE-NPWD 218 (270)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred CCCCc-CCcCCHHHhccccCCCEEEecC-CCee
Confidence 99886 555554 467788999999988 5554
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=2.8e-16 Score=168.47 Aligned_cols=200 Identities=17% Similarity=0.120 Sum_probs=154.3
Q ss_pred ccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 541 EWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 541 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
...++++|++|.+.++.+.. ++.+ . .+++|++|++++|.+..+++ +..+++|++|+|++|.+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-------------l~~~--~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT-------------IEGV--Q-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC-------------CTTG--G-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred cHHHcCCcCEEEeeCCCccC-------------chhh--h-ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 34568899999999998753 2333 3 88999999999999998876 99999999999999999
Q ss_pred cccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCC
Q 044931 621 DSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTK 700 (889)
Q Consensus 621 ~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 700 (889)
+.+| .+..+++|++|++++|.++.+|. +..+++|++|++++|.....+. +..
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--------------------------l~~ 149 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--------------------------LAG 149 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--------------------------GGG
T ss_pred CCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--------------------------ccC
Confidence 9986 79999999999999999999875 8999999999999876433321 223
Q ss_pred CCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCC
Q 044931 701 WPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLV 780 (889)
Q Consensus 701 l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~ 780 (889)
+++|+.|+++++. +..++ .+..+ ++|+.|++++|.+.
T Consensus 150 l~~L~~L~l~~n~----------------------------------------l~~~~--~l~~l-~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 150 LTNLQYLSIGNAQ----------------------------------------VSDLT--PLANL-SKLTTLKADDNKIS 186 (308)
T ss_dssp CTTCCEEECCSSC----------------------------------------CCCCG--GGTTC-TTCCEEECCSSCCC
T ss_pred CCCccEEEccCCc----------------------------------------CCCCh--hhcCC-CCCCEEECCCCccC
Confidence 4445555554431 11222 23334 89999999999986
Q ss_pred CCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecc
Q 044931 781 YDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVE 835 (889)
Q Consensus 781 ~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 835 (889)
+. +.+..+++|+.|+|++|.+.+.. .+..+++|+.|++++|+ +...|..
T Consensus 187 ~~--~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~-i~~~~~~ 235 (308)
T 1h6u_A 187 DI--SPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQT-ITNQPVF 235 (308)
T ss_dssp CC--GGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEE-EECCCEE
T ss_pred cC--hhhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCe-eecCCee
Confidence 43 34899999999999988886533 36889999999999998 4555443
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=1e-18 Score=206.36 Aligned_cols=339 Identities=16% Similarity=0.095 Sum_probs=178.0
Q ss_pred ceeeeeeeeCCCCCcCCCccc-cccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCCh
Q 044931 523 AVRRLATYLGVSTNFIPSEWS-WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSD 601 (889)
Q Consensus 523 ~~r~lsl~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~ 601 (889)
..+++.+..+......+..+. .+++|++|.+.+|..... ..++.+. . .+++|++|+|++|.+.....
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----------~~l~~~~-~-~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST----------DGLAAIA-A-TCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH----------HHHHHHH-H-HCTTCCEEECTTCEEECCCG
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH----------HHHHHHH-H-hCCCCCEEeCcCCccCCcch
Confidence 355666653332221122232 577888888887732110 0233444 4 67788888888887664332
Q ss_pred HHhc----cccCCcEEeCCCCC--Cc--ccccccCCCCCCcEEeecCC-CcccCchhhhhcccccccccccccCC-----
Q 044931 602 DVIG----KLLNLRYLGLRSTF--ID--SLPKSVGILPRLETLDVKHT-KLRFLPDSIWKAKKLQHLYLNWIHSP----- 667 (889)
Q Consensus 602 ~~i~----~l~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~----- 667 (889)
..+. .+++|++|+|++|. +. .++..+.++++|++|++++| .+..+|..+.++++|++|+++.+...
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 2233 56688888888775 22 23333445688888888887 66677777777888888876543210
Q ss_pred --CCCCCcccc------------------------cccccccccccccCCCc-cccCCCCCCCCCeeecccCch-hhHHH
Q 044931 668 --IDGLSLSSL------------------------NNLQTLWGLSIESYTPF-RQSDSTKWPRLIKLGVKCDSQ-MAIEF 719 (889)
Q Consensus 668 --~~~~~i~~l------------------------~~L~~L~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~-~~l~~ 719 (889)
..+..++++ ++|++|..-.+. .... ....+..+++|+.|.+.++-. ..+..
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 011122233 333333211111 1111 111133455566665555522 33333
Q ss_pred HHhhhcccccccceec---------ccC-----C--cccccccccccccc-ccc-cccccccccCCCccEEEee--c---
Q 044931 720 IINLLVCARTDGLVEI---------EYG-----E--ARVTTLQELYLRGS-IHS-FFDYGIEWNYPNLKILTLS--M--- 776 (889)
Q Consensus 720 ~l~~l~~L~~L~l~~~---------~l~-----~--~~~~~L~~L~l~~~-~~~-~p~~~~~~~~~~L~~L~L~--~--- 776 (889)
....+++|+.|++..+ .+. . ..+++|+.|.+.++ +.. .+. .+...+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~-~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH-HHHHHCTTCCEEEEEESSTTC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH-HHHhhCCCcceeEeecccCCC
Confidence 3344555666655221 111 0 12456666644331 111 111 222223777777777 2
Q ss_pred -cCCCCCCc-----hhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceeccc-Ccccccceeeccc
Q 044931 777 -SRLVYDPM-----PLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEK-GAMPRLRELEIRS 849 (889)
Q Consensus 777 -~~l~~~~~-----~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~lp~L~~L~l~~ 849 (889)
+.++..+. ..+..+++|+.|+|++ .+....+......+++|+.|++++|.........+ ..+|+|+.|+|++
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 23332211 1245677777777764 33332222112237889999998887433222222 5689999999999
Q ss_pred ccCCCCCC-CcchhhhhcccceEEeccCch
Q 044931 850 CNNLKPPQ-PQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 850 C~~L~~~l-p~~l~~l~~~L~~L~l~~cp~ 878 (889)
|+- ++.. +..+..++ +|+.|++++|+.
T Consensus 491 n~~-~~~~~~~~~~~l~-~L~~L~l~~~~~ 518 (594)
T 2p1m_B 491 CPF-GDKALLANASKLE-TMRSLWMSSCSV 518 (594)
T ss_dssp CSC-CHHHHHHTGGGGG-GSSEEEEESSCC
T ss_pred CCC-cHHHHHHHHHhCC-CCCEEeeeCCCC
Confidence 764 4222 22345688 999999999986
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=6.7e-16 Score=163.85 Aligned_cols=111 Identities=21% Similarity=0.092 Sum_probs=86.2
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID 621 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~ 621 (889)
+..+++++++.+.++.+...+ .. -.+.|++|+|++|.+..+++..|.++++|++|+|++|.++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip------------~~-----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 68 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP------------PD-----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC------------SC-----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred ccccCCccEEECCCCCCCcCC------------CC-----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC
Confidence 456778888888888775322 11 2356888899999888777667888899999999988888
Q ss_pred ccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCC
Q 044931 622 SLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDG 670 (889)
Q Consensus 622 ~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 670 (889)
.+|.. +.+++|++|++++|.++.+|..+..+++|++|++++|.....|
T Consensus 69 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~ 116 (290)
T 1p9a_G 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116 (290)
T ss_dssp EEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC
T ss_pred cccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC
Confidence 88754 7888899999998888888888888888888888887654433
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=4.4e-16 Score=163.94 Aligned_cols=213 Identities=21% Similarity=0.190 Sum_probs=163.7
Q ss_pred CccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCC
Q 044931 540 SEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTF 619 (889)
Q Consensus 540 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~ 619 (889)
.....+++|+.|.+.++.+.. ++.+ . .+++|++|++++|.+..++ .++++++|++|+|++|.
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~-------------~~~l--~-~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKS-------------VQGI--Q-YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCC-------------CTTG--G-GCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSC
T ss_pred cccccccceeeeeeCCCCccc-------------cccc--c-cCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCc
Confidence 446689999999999998753 3333 3 8999999999999998864 69999999999999999
Q ss_pred Ccccccc-cCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccC
Q 044931 620 IDSLPKS-VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSD 697 (889)
Q Consensus 620 i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~ 697 (889)
++.+|.. ++++++|++|++++|+++.+|.. +.++++|++|++++|.....|.. .
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------------~ 152 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------------------V 152 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------------T
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH------------------------H
Confidence 9988754 79999999999999999988765 78899999999998764433321 1
Q ss_pred CCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeecc
Q 044931 698 STKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMS 777 (889)
Q Consensus 698 l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~ 777 (889)
++.+++|+.|+++++. +..+|...+..+ ++|+.|++++|
T Consensus 153 ~~~l~~L~~L~l~~n~----------------------------------------l~~~~~~~~~~l-~~L~~L~L~~N 191 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQ----------------------------------------LQSLPEGVFDKL-TQLKDLRLYQN 191 (272)
T ss_dssp TTTCTTCCEEECCSSC----------------------------------------CCCCCTTTTTTC-TTCCEEECCSS
T ss_pred hccCccCCEEECCCCC----------------------------------------cCccCHHHhcCC-ccCCEEECCCC
Confidence 2334445555554431 122332134445 89999999999
Q ss_pred CCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCcccccc
Q 044931 778 RLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMPRLR 843 (889)
Q Consensus 778 ~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~ 843 (889)
.+.+..+..++.+++|+.|++++|.+. +.+|+|+.|.++.|.....+|..++.++...
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGGG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCcccccCCCC
Confidence 998777777899999999999988654 3477899999998887777888777766543
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=8e-18 Score=198.73 Aligned_cols=311 Identities=14% Similarity=0.091 Sum_probs=187.3
Q ss_pred cccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChH----HhccccCCcEEeCCCC-
Q 044931 544 WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDD----VIGKLLNLRYLGLRST- 618 (889)
Q Consensus 544 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~----~i~~l~~Lr~L~L~~~- 618 (889)
.+++|++|++.+|.+...... .+..+. . .+++|+.|++++|. ..+... .+.++++|++|+|++|
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~--------~l~~~~-~-~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGH--------WLSHFP-D-TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGG--------GGGGSC-T-TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred hCCCCCEEeCcCCccCCcchH--------HHHHHh-h-cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 566777777776664332211 233333 3 56667777777665 222211 2234566777777665
Q ss_pred CCcccccccCCCCCCcEEeecCC-------------------------------CcccCchhhhhcccccccccccccCC
Q 044931 619 FIDSLPKSVGILPRLETLDVKHT-------------------------------KLRFLPDSIWKAKKLQHLYLNWIHSP 667 (889)
Q Consensus 619 ~i~~lp~~i~~L~~L~~L~L~~~-------------------------------~l~~lp~~i~~L~~L~~L~l~~~~~~ 667 (889)
.+..+|..+.++++|+.|++..+ ....+|..+..+++|++|++++|...
T Consensus 223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 34455555555566666654332 22345555667899999999987622
Q ss_pred C--CCCCcccccccccccccccccCCCcccc-CCCCCCCCCeeeccc---------Cch--hhHHHHHhhhcccccccce
Q 044931 668 I--DGLSLSSLNNLQTLWGLSIESYTPFRQS-DSTKWPRLIKLGVKC---------DSQ--MAIEFIINLLVCARTDGLV 733 (889)
Q Consensus 668 ~--~~~~i~~l~~L~~L~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~---------~~~--~~l~~~l~~l~~L~~L~l~ 733 (889)
. ++..+..+++|++|....+ . ....+. ....+++|+.|++.. +.. ..+......+++|+.|.+.
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-I-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-G-HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-c-CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 1 1112446777777743322 1 111122 223578999998833 222 3344444568899999665
Q ss_pred ecccCC-------cccccccccccc--c-----ccccccc-c----cccccCCCccEEEeeccCCCCCCchhhhc-CCCC
Q 044931 734 EIEYGE-------ARVTTLQELYLR--G-----SIHSFFD-Y----GIEWNYPNLKILTLSMSRLVYDPMPLLEE-LAHL 793 (889)
Q Consensus 734 ~~~l~~-------~~~~~L~~L~l~--~-----~~~~~p~-~----~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-L~~L 793 (889)
.+.+.. ..+++|+.|++. + .+...|. . .+.. +++|+.|+|++ .+++..+..++. +++|
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 543322 247899999998 2 3332221 0 1233 48999999987 666666667766 9999
Q ss_pred CeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcce-ecccCcccccceeecccccCCCCCCCcchh----hhhccc
Q 044931 794 NILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEW-TVEKGAMPRLRELEIRSCNNLKPPQPQGLQ----NLTNTL 868 (889)
Q Consensus 794 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~----~l~~~L 868 (889)
+.|+|++|.+.+..+.....++|+|+.|++++|+..... ......+++|+.|++++|+. + +.++. .+| +|
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~---~~~~~~l~~~lp-~l 533 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-S---FGACKLLGQKMP-KL 533 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-B---HHHHHHHHHHCT-TE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-C---HHHHHHHHHhCC-CC
Confidence 999999888755444333356899999999999863222 22445689999999999874 4 34443 345 56
Q ss_pred ceEEec
Q 044931 869 KEFVLT 874 (889)
Q Consensus 869 ~~L~l~ 874 (889)
+...+.
T Consensus 534 ~i~~~~ 539 (594)
T 2p1m_B 534 NVEVID 539 (594)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 544444
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=2.6e-16 Score=162.36 Aligned_cols=198 Identities=15% Similarity=0.151 Sum_probs=122.6
Q ss_pred eeeEEEecCcccCCCChHHhccccCCcEEeCCCCC-Cccccc-ccCCCCCCcEEeecC-CCcccCch-hhhhcccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTF-IDSLPK-SVGILPRLETLDVKH-TKLRFLPD-SIWKAKKLQHLY 660 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~lp~-~i~~L~~L~~L~ 660 (889)
.|+.|++++|.++.+++..|+++++|++|++++|. ++.+|. .+.++++|++|++++ |+++.+|. .+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 57777788877777776667777888888887775 777764 577777888888877 67777764 456677777777
Q ss_pred cccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCc
Q 044931 661 LNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEA 740 (889)
Q Consensus 661 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~ 740 (889)
+++|....+|. ++.+++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L------------------------------------------------------------- 129 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYST------------------------------------------------------------- 129 (239)
T ss_dssp EEEECCCSCCC-CTTCCBC-------------------------------------------------------------
T ss_pred CCCCCCccccc-ccccccc-------------------------------------------------------------
Confidence 77654333321 1111111
Q ss_pred cccccccccccccccccccccccccCCCccEEEeecc-CCCCCCchhhhcCCCCC-eEEeecCccCCCcceeCCCCCCcc
Q 044931 741 RVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMS-RLVYDPMPLLEELAHLN-ILRLYRGAYLGEETTCSSGGFPQL 818 (889)
Q Consensus 741 ~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~L~~L~-~L~L~~~~~~~~~~~~~~~~~~~L 818 (889)
..|+.|++++| .+.......++.+++|+ .|++++|.+. .++......++|
T Consensus 130 --------------------------~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L 181 (239)
T 2xwt_C 130 --------------------------DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKL 181 (239)
T ss_dssp --------------------------CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCEE
T ss_pred --------------------------ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCCC
Confidence 11234555555 44433333455566666 6666655443 122222222677
Q ss_pred cEEEccccCCCccee-cccCcc-cccceeecccccCCCCCCCcchhhhhcccceEEeccCc
Q 044931 819 RVLKLWNLFSLEEWT-VEKGAM-PRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMP 877 (889)
Q Consensus 819 ~~L~l~~~~~l~~~~-~~~~~l-p~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp 877 (889)
+.|++++|+.+..++ ..+..+ ++|+.|++++ ++++ .+|.. .++ +|+.|.+.+++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~-~l~~~--~~~-~L~~L~l~~~~ 237 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVT-ALPSK--GLE-HLKELIARNTW 237 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCC-CCCCT--TCT-TCSEEECTTC-
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCC-Cccc-cCChh--Hhc-cCceeeccCcc
Confidence 788887775455654 345667 7888888887 7777 67765 566 77888877765
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=6.6e-17 Score=176.14 Aligned_cols=232 Identities=18% Similarity=0.155 Sum_probs=149.7
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc--cccccCCCCCCcEEeecCCCcc-cCchhhhhcccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS--LPKSVGILPRLETLDVKHTKLR-FLPDSIWKAKKLQHLY 660 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~ 660 (889)
+.++.|++++|.+...++ .+..+++|++|+|++|.+.. +|..+..+++|++|++++|.+. ..|..+.++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 567777788777776666 56677778888887777662 6667777778888888777766 4566677777777777
Q ss_pred cccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccC-ch--hhHHHHHhhhc-ccccccceecc
Q 044931 661 LNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCD-SQ--MAIEFIINLLV-CARTDGLVEIE 736 (889)
Q Consensus 661 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~--~~l~~~l~~l~-~L~~L~l~~~~ 736 (889)
+++|..... ......+..+++|+.|+++++ .. ..+...+..++ +|+.|
T Consensus 149 L~~~~~l~~----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L------ 200 (336)
T 2ast_B 149 LSGCSGFSE----------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL------ 200 (336)
T ss_dssp CTTCBSCCH----------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE------
T ss_pred CCCCCCCCH----------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE------
Confidence 777521100 001112334566777777776 43 23455555554 44444
Q ss_pred cCCccccccccccccccc-----cccccccccccCCCccEEEeeccC-CCCCCchhhhcCCCCCeEEeecCccCCCccee
Q 044931 737 YGEARVTTLQELYLRGSI-----HSFFDYGIEWNYPNLKILTLSMSR-LVYDPMPLLEELAHLNILRLYRGAYLGEETTC 810 (889)
Q Consensus 737 l~~~~~~~L~~L~l~~~~-----~~~p~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~ 810 (889)
+++++. ..+|. .+..+ ++|+.|++++|. +++..+..++++++|+.|++++|.........
T Consensus 201 ------------~l~~~~~~~~~~~l~~-~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 201 ------------NLSGYRKNLQKSDLST-LVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp ------------ECCSCGGGSCHHHHHH-HHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred ------------EeCCCcccCCHHHHHH-HHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 444431 23444 44445 999999999998 66677888999999999999987533222223
Q ss_pred CCCCCCcccEEEccccCCCcceecccCcc-cccceeecccccCCCCCCCcchhh
Q 044931 811 SSGGFPQLRVLKLWNLFSLEEWTVEKGAM-PRLRELEIRSCNNLKPPQPQGLQN 863 (889)
Q Consensus 811 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-p~L~~L~l~~C~~L~~~lp~~l~~ 863 (889)
.+..+|+|+.|++++| +..- .+..+ .+|..|+++ |+++++..|..+.+
T Consensus 267 ~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~-~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQIN-CSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEES-CCCSCCTTCSSCSS
T ss_pred HHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEe-cccCccccCCcccc
Confidence 4567999999999988 2211 12223 346777775 58888667765543
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.9e-15 Score=159.54 Aligned_cols=203 Identities=17% Similarity=0.036 Sum_probs=128.4
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCc-hhhhhccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLP-DSIWKAKKLQHLYL 661 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l 661 (889)
+.|++|++++|.++.+++..|.++++|++|+|++|.+..+|. .+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357788888888777766567778888888888887776654 6777888888888888777665 45777777888877
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEAR 741 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~ 741 (889)
++|.....+. ..++.+++|+.|+++++.
T Consensus 108 ~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n~---------------------------- 135 (276)
T 2z62_A 108 VETNLASLEN------------------------FPIGHLKTLKELNVAHNL---------------------------- 135 (276)
T ss_dssp TTSCCCCSTT------------------------CCCTTCTTCCEEECCSSC----------------------------
T ss_pred CCCCccccCc------------------------hhcccCCCCCEEECcCCc----------------------------
Confidence 7654322211 113344445555544431
Q ss_pred ccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCC----eEEeecCccCCCcceeCCCCCCc
Q 044931 742 VTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLN----ILRLYRGAYLGEETTCSSGGFPQ 817 (889)
Q Consensus 742 ~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~----~L~L~~~~~~~~~~~~~~~~~~~ 817 (889)
++. ..+|. ++..+ ++|+.|++++|.+.+.....+..+++|+ .|++++|.+.. ++......++
T Consensus 136 ---l~~-------~~l~~-~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~ 201 (276)
T 2z62_A 136 ---IQS-------FKLPE-YFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIR 201 (276)
T ss_dssp ---CCC-------CCCCG-GGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCC
T ss_pred ---cce-------ecCch-hhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc--cCccccCCCc
Confidence 000 01344 55555 7788888888877665555555555555 67777666543 2222333447
Q ss_pred ccEEEccccCCCcceecc-cCcccccceeecccccCCC
Q 044931 818 LRVLKLWNLFSLEEWTVE-KGAMPRLRELEIRSCNNLK 854 (889)
Q Consensus 818 L~~L~l~~~~~l~~~~~~-~~~lp~L~~L~l~~C~~L~ 854 (889)
|+.|++++|. +..++.. +..+++|+.|++++ |.+.
T Consensus 202 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-N~~~ 237 (276)
T 2z62_A 202 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT-NPWD 237 (276)
T ss_dssp EEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS-SCBC
T ss_pred ccEEECCCCc-eeecCHhHhcccccccEEEccC-Cccc
Confidence 8888888776 5555443 46677888888877 5555
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=1e-15 Score=161.65 Aligned_cols=124 Identities=23% Similarity=0.162 Sum_probs=101.2
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.++|++|++++|.+.. ..+..+ . .+++|++|++++|.+..+++..|.++++|++|+|++|.+..+|
T Consensus 27 ~~~l~~L~ls~n~l~~------------~~~~~~-~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRH------------LGSYSF-F-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp CTTCCEEECTTCCCCE------------ECTTTT-T-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCccEEECCCCcccc------------cCHhHh-c-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 3689999999998853 333344 5 8999999999999999888768999999999999999999776
Q ss_pred -cccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCC--CCCCcccccccccc
Q 044931 625 -KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPI--DGLSLSSLNNLQTL 682 (889)
Q Consensus 625 -~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~~~i~~l~~L~~L 682 (889)
..+.++++|++|++++|++..++. .+.++++|++|++++|.... +|..++.+++|++|
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 679999999999999999998876 68899999999999876443 34444444444443
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=6.2e-15 Score=154.94 Aligned_cols=198 Identities=21% Similarity=0.168 Sum_probs=129.0
Q ss_pred ccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccc
Q 044931 547 HLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKS 626 (889)
Q Consensus 547 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~ 626 (889)
++++++++++.+...+ .. -.+.|+.|++++|.+..+++..|+++++|++|+|++|.++.+|..
T Consensus 17 ~~~~l~~~~~~l~~ip-------------~~----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-------------SN----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp TTTEEECTTSCCSSCC-------------SC----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CCCEEEccCCCCCccC-------------CC----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 4667777777664321 11 224688889999988888876788889999999998888888765
Q ss_pred -cCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCC
Q 044931 627 -VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRL 704 (889)
Q Consensus 627 -i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L 704 (889)
+.++++|++|++++|.++.+|.. +..+++|++|++++|.....+. ..+..+++|
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L 135 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP------------------------RVFDSLTKL 135 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT------------------------TTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH------------------------HHhCcCcCC
Confidence 47788999999998888888754 5778888888888865433321 112334444
Q ss_pred CeeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCCCCCc
Q 044931 705 IKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPM 784 (889)
Q Consensus 705 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~ 784 (889)
+.|+++++. +..+|...+..+ ++|+.|+|++|.+....+
T Consensus 136 ~~L~Ls~n~----------------------------------------l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 136 TYLSLGYNE----------------------------------------LQSLPKGVFDKL-TSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CEEECCSSC----------------------------------------CCCCCTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCc----------------------------------------CCccCHhHccCC-cccceeEecCCcCcEeCh
Confidence 444444331 112222123334 677777777777665555
Q ss_pred hhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccC
Q 044931 785 PLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLF 827 (889)
Q Consensus 785 ~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (889)
..+..+++|+.|+|++|.+.. ..+..+..+++|+.|++++|+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCC
Confidence 556677777777777665543 222335566777777777766
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=9.1e-17 Score=178.62 Aligned_cols=267 Identities=18% Similarity=0.111 Sum_probs=167.3
Q ss_pred CceeeeEEEecCcccCCCChH----HhccccCCcEEeCCCCCCc----cccccc-------CCCCCCcEEeecCCCccc-
Q 044931 582 GFVLLTVLDLEGVYKLKLSDD----VIGKLLNLRYLGLRSTFID----SLPKSV-------GILPRLETLDVKHTKLRF- 645 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~----~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~l~~- 645 (889)
.+++|+.|+|++|.+...... .+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 778899999999988753221 4668899999999987555 344444 788999999999998876
Q ss_pred ----CchhhhhcccccccccccccCCCC-CCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCch--hhHH
Q 044931 646 ----LPDSIWKAKKLQHLYLNWIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQ--MAIE 718 (889)
Q Consensus 646 ----lp~~i~~L~~L~~L~l~~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~l~ 718 (889)
+|..+.++++|++|++++|..... +..+.. .|..+...... +..++|+.|+++++.. ..+.
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~l~~~~~~----------~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKA----------KNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHHHHHHH----------HTCCCCCEEECCSSCCTGGGHH
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--HHHHHhhhhhc----------ccCCCCcEEECCCCCCCcHHHH
Confidence 777888999999999988753211 111111 01111000000 0116788888887764 2222
Q ss_pred ---HHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCC----CCCchhhhcCC
Q 044931 719 ---FIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLV----YDPMPLLEELA 791 (889)
Q Consensus 719 ---~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~----~~~~~~l~~L~ 791 (889)
..+..+++|+.|.++++.+.. - |...-.|. ++..+ ++|+.|+|++|.++ ...+..+..++
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~--------~---g~~~l~~~-~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRP--------E---GIEHLLLE-GLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCH--------H---HHHHHHHT-TGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred HHHHHHHhCCCcCEEECcCCCCCH--------h---HHHHHHHH-HhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 455555555555554321110 0 00001222 44445 89999999999875 33456678899
Q ss_pred CCCeEEeecCccCCCc---ceeCC--CCCCcccEEEccccCCCc----ceeccc-CcccccceeecccccCCCCCCC--c
Q 044931 792 HLNILRLYRGAYLGEE---TTCSS--GGFPQLRVLKLWNLFSLE----EWTVEK-GAMPRLRELEIRSCNNLKPPQP--Q 859 (889)
Q Consensus 792 ~L~~L~L~~~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~l~----~~~~~~-~~lp~L~~L~l~~C~~L~~~lp--~ 859 (889)
+|+.|+|++|.+.... ++..+ +.+++|+.|+|++|.... .+|..+ ..+|+|+.|++++ |.+++..| .
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~-N~l~~~~~~~~ 323 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG-NRFSEEDDVVD 323 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT-SBSCTTSHHHH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC-CcCCcchhHHH
Confidence 9999999988765431 12222 458899999999987443 266655 5689999999998 66773332 2
Q ss_pred chh-hhhcccceEEecc
Q 044931 860 GLQ-NLTNTLKEFVLTN 875 (889)
Q Consensus 860 ~l~-~l~~~L~~L~l~~ 875 (889)
.+. .++ +++.+++..
T Consensus 324 ~l~~~l~-~~~~~~l~~ 339 (386)
T 2ca6_A 324 EIREVFS-TRGRGELDE 339 (386)
T ss_dssp HHHHHHH-HHTCCEECC
T ss_pred HHHHHhh-hcCcchhhh
Confidence 332 344 666666554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=163.54 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=55.8
Q ss_pred CceeeeEEEecCcccCCCChHHh--ccccCCcEEeCCCCCCcc-cc----cccCCCCCCcEEeecCCCcccCc-hhhhhc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVI--GKLLNLRYLGLRSTFIDS-LP----KSVGILPRLETLDVKHTKLRFLP-DSIWKA 653 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i--~~l~~Lr~L~L~~~~i~~-lp----~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L 653 (889)
.++.|+.|++++|.+....+..+ +.+.+|++|+|++|.+.. .| ..+..+++|++|++++|.+..+| ..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34557778888777765444355 777777777777777763 22 23456777777777777777665 356667
Q ss_pred cccccccccccc
Q 044931 654 KKLQHLYLNWIH 665 (889)
Q Consensus 654 ~~L~~L~l~~~~ 665 (889)
++|++|++++|.
T Consensus 169 ~~L~~L~Ls~N~ 180 (310)
T 4glp_A 169 PALTSLDLSDNP 180 (310)
T ss_dssp TTCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 777777777654
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=2e-15 Score=155.68 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=136.2
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcc-cCCCChHHhccccCCcEEeCCC-CCCcc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVY-KLKLSDDVIGKLLNLRYLGLRS-TFIDS 622 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l~~~~i~~l~~Lr~L~L~~-~~i~~ 622 (889)
.++|++|++.+|.+.. ..+..| . .+++|+.|++++|. ++.+++..|.++++|++|+|++ |.++.
T Consensus 30 ~~~l~~L~l~~n~l~~------------i~~~~~-~-~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRT------------IPSHAF-S-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp CTTCCEEEEESCCCSE------------ECTTTT-T-TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred CCcccEEEEeCCcceE------------ECHHHc-c-CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 3489999999998853 334455 5 89999999999997 8888876899999999999998 99998
Q ss_pred cc-cccCCCCCCcEEeecCCCcccCchhhhhccccc---ccccccc-cCCCCCCCcccccccccccccccccCCCccccC
Q 044931 623 LP-KSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQ---HLYLNWI-HSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSD 697 (889)
Q Consensus 623 lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~---~L~l~~~-~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~ 697 (889)
+| ..+.++++|++|++++|.++.+|. +..+++|+ +|++++| .....|. ..
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------------------------~~ 150 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV------------------------NA 150 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT------------------------TT
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc------------------------cc
Confidence 87 468899999999999999999997 88888888 9999886 3322221 11
Q ss_pred CCCCCCCC-eeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeec
Q 044931 698 STKWPRLI-KLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSM 776 (889)
Q Consensus 698 l~~l~~L~-~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~ 776 (889)
+..+++|+ .|+++++ .+..+|. ..... ++|+.|++++
T Consensus 151 ~~~l~~L~~~L~l~~n----------------------------------------~l~~i~~-~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNN----------------------------------------GFTSVQG-YAFNG-TKLDAVYLNK 188 (239)
T ss_dssp TTTTBSSEEEEECCSC----------------------------------------CCCEECT-TTTTT-CEEEEEECTT
T ss_pred ccchhcceeEEEcCCC----------------------------------------CCcccCH-hhcCC-CCCCEEEcCC
Confidence 22333333 4443322 1223333 22223 5778888888
Q ss_pred cC-CCCCCchhhhcC-CCCCeEEeecCccCCCcceeCCCCCCcccEEEccccC
Q 044931 777 SR-LVYDPMPLLEEL-AHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLF 827 (889)
Q Consensus 777 ~~-l~~~~~~~l~~L-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 827 (889)
|. +.......+..+ ++|+.|++++|.+.. ++ ...|++|+.|.+.++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~--~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LP--SKGLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CC--CTTCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc--CC--hhHhccCceeeccCcc
Confidence 74 664445556666 677777776665543 11 1256666666666543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=7.8e-15 Score=160.44 Aligned_cols=239 Identities=18% Similarity=0.094 Sum_probs=136.8
Q ss_pred eEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcc-cCch-hhhhcccccccc-cc
Q 044931 587 TVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLR-FLPD-SIWKAKKLQHLY-LN 662 (889)
Q Consensus 587 r~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~-~lp~-~i~~L~~L~~L~-l~ 662 (889)
++++.++++++.+|. .+ ..+|++|+|++|.|+.+|. .|.+|++|++|+|++|++. .+|. .+.++++|.++. +.
T Consensus 12 ~~v~C~~~~Lt~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 678889999999987 55 3589999999999999986 5899999999999999864 4665 356787776544 44
Q ss_pred cccCCCC-CCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcc
Q 044931 663 WIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEAR 741 (889)
Q Consensus 663 ~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~ 741 (889)
++....+ |..+..+++|+.|. +..+..............++..|.+..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~-l~~n~l~~~~~~~~~~~~~l~~l~l~~~----------------------------- 138 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLL-ISNTGIKHLPDVHKIHSLQKVLLDIQDN----------------------------- 138 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEE-EEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------------
T ss_pred CCcccccCchhhhhcccccccc-ccccccccCCchhhcccchhhhhhhccc-----------------------------
Confidence 4444333 34456666666552 2222111111111112222222222211
Q ss_pred ccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 742 VTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 742 ~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
..+..+|...+......++.|++++|.+.. .++......+|+.|.+.+++.........+.++++|+.|
T Consensus 139 ----------~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 139 ----------INIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp ----------TTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred ----------cccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 012223322333332456666666666653 223333445666666654444443333345666667777
Q ss_pred EccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEecc
Q 044931 822 KLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTN 875 (889)
Q Consensus 822 ~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~ 875 (889)
++++|. +..+|. +.+.+|+.|.+.+|++++ .+|. +..++ +|+.+++.+
T Consensus 208 dLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~-~lP~-l~~l~-~L~~l~l~~ 255 (350)
T 4ay9_X 208 DISRTR-IHSLPS--YGLENLKKLRARSTYNLK-KLPT-LEKLV-ALMEASLTY 255 (350)
T ss_dssp ECTTSC-CCCCCS--SSCTTCCEEECTTCTTCC-CCCC-TTTCC-SCCEEECSC
T ss_pred hcCCCC-cCccCh--hhhccchHhhhccCCCcC-cCCC-chhCc-ChhhCcCCC
Confidence 776664 555554 235666666666666666 6663 56666 666666654
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=2.4e-14 Score=151.99 Aligned_cols=169 Identities=20% Similarity=0.149 Sum_probs=115.2
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.++.|+.|++++|.+..++ .+..+++|++|+|++|.++.+|. ++++++|++|++++|.++.+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 5667777777777777664 37777788888888777777765 7777788888888777777653 777777777777
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEAR 741 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~ 741 (889)
++|....++ . +..+++|+.|+++++.
T Consensus 120 ~~n~i~~~~-~-------------------------l~~l~~L~~L~l~~n~---------------------------- 145 (291)
T 1h6t_A 120 EHNGISDIN-G-------------------------LVHLPQLESLYLGNNK---------------------------- 145 (291)
T ss_dssp TTSCCCCCG-G-------------------------GGGCTTCCEEECCSSC----------------------------
T ss_pred CCCcCCCCh-h-------------------------hcCCCCCCEEEccCCc----------------------------
Confidence 775432211 1 1223344444444331
Q ss_pred ccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 742 VTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 742 ~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
+..++ .+..+ ++|+.|++++|.+.+.. + +..+++|+.|++++|.+... + .+..+++|+.|
T Consensus 146 ------------l~~~~--~l~~l-~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~L~~N~i~~l--~-~l~~l~~L~~L 205 (291)
T 1h6t_A 146 ------------ITDIT--VLSRL-TKLDTLSLEDNQISDIV-P-LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVL 205 (291)
T ss_dssp ------------CCCCG--GGGGC-TTCSEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEE
T ss_pred ------------CCcch--hhccC-CCCCEEEccCCccccch-h-hcCCCccCEEECCCCcCCCC--h-hhccCCCCCEE
Confidence 11121 34445 88999999999887533 2 88999999999998877652 2 36788999999
Q ss_pred EccccCC
Q 044931 822 KLWNLFS 828 (889)
Q Consensus 822 ~l~~~~~ 828 (889)
++++|+.
T Consensus 206 ~l~~n~i 212 (291)
T 1h6t_A 206 ELFSQEC 212 (291)
T ss_dssp EEEEEEE
T ss_pred ECcCCcc
Confidence 9998873
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=2.2e-16 Score=175.45 Aligned_cols=117 Identities=11% Similarity=0.067 Sum_probs=89.5
Q ss_pred CCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCC----CChHH-------hccc
Q 044931 539 PSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLK----LSDDV-------IGKL 607 (889)
Q Consensus 539 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~----l~~~~-------i~~l 607 (889)
...+..+++|++|.+++|.+...... .+...+ . .+++|++|+|++|.+.. +|. . +..+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~--------~l~~~l-~-~~~~L~~L~Ls~~~~~~l~~~~~~-~~~~l~~~l~~~ 93 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAAR--------WLSENI-A-SKKDLEIAEFSDIFTGRVKDEIPE-ALRLLLQALLKC 93 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHH--------HHHHTT-T-TCTTCCEEECCSCCTTSCGGGSHH-HHHHHHHHHTTC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHH--------HHHHHH-H-hCCCccEEeCcccccCccccchhH-HHHHHHHHHhhC
Confidence 34466789999999999987532111 234445 5 89999999999986553 233 3 3789
Q ss_pred cCCcEEeCCCCCCcc-----cccccCCCCCCcEEeecCCCccc-----Cchhhhhc---------ccccccccccccC
Q 044931 608 LNLRYLGLRSTFIDS-----LPKSVGILPRLETLDVKHTKLRF-----LPDSIWKA---------KKLQHLYLNWIHS 666 (889)
Q Consensus 608 ~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~ 666 (889)
++|++|+|++|.+.. +|..+.++++|++|+|++|.+.. ++..+..+ ++|++|++++|..
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 999999999999886 78889999999999999998863 34445555 8999999998764
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.5e-15 Score=165.31 Aligned_cols=246 Identities=20% Similarity=0.166 Sum_probs=176.3
Q ss_pred ceeeeEEEecCcccCCCChHHhccc--cCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCccc--Cchhhhhcccccc
Q 044931 583 FVLLTVLDLEGVYKLKLSDDVIGKL--LNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRF--LPDSIWKAKKLQH 658 (889)
Q Consensus 583 l~~Lr~L~L~~~~i~~l~~~~i~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~ 658 (889)
-..++.|+++++.+. +..+..+ .+|++|++++|.+...+..+.++++|++|++++|.+.. +|..+..+++|++
T Consensus 46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 345889999999876 3378888 89999999999999887788899999999999998873 7888999999999
Q ss_pred cccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCc-h--hhHHHHHhhhcccccccceec
Q 044931 659 LYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDS-Q--MAIEFIINLLVCARTDGLVEI 735 (889)
Q Consensus 659 L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~--~~l~~~l~~l~~L~~L~l~~~ 735 (889)
|++++|.... ..+..++.+++|+.|+++++. . ..+...+..+++|+.|+++++
T Consensus 123 L~L~~~~l~~------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 123 LSLEGLRLSD------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp EECTTCBCCH------------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EeCcCcccCH------------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 9999864211 112234457788888888884 3 246666676666655555432
Q ss_pred ccCCccccccccccccccccccccccccccCC-CccEEEeecc--CCC-CCCchhhhcCCCCCeEEeecCccCCCcceeC
Q 044931 736 EYGEARVTTLQELYLRGSIHSFFDYGIEWNYP-NLKILTLSMS--RLV-YDPMPLLEELAHLNILRLYRGAYLGEETTCS 811 (889)
Q Consensus 736 ~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~-~L~~L~L~~~--~l~-~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~ 811 (889)
+.+.. ..++. .+..+ + +|+.|++++| .++ ...+..++++++|+.|++++|.......+..
T Consensus 179 -------~~l~~-------~~~~~-~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 179 -------FDFTE-------KHVQV-AVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp -------TTCCH-------HHHHH-HHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred -------CCcCh-------HHHHH-HHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 01110 01343 45555 7 9999999999 454 2334567899999999999888433344446
Q ss_pred CCCCCcccEEEccccCCCcc-eecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccC
Q 044931 812 SGGFPQLRVLKLWNLFSLEE-WTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNM 876 (889)
Q Consensus 812 ~~~~~~L~~L~l~~~~~l~~-~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~c 876 (889)
+..+++|+.|++++|..+.. ....++.+|+|+.|++++| +. ..++..+..+|+.|+++++
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~---~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VP---DGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SC---TTCHHHHHHHSTTSEESCC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cC---HHHHHHHHhhCcceEEecc
Confidence 77889999999999963322 1224678999999999997 44 2345566425778888764
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=3.8e-15 Score=163.83 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=71.8
Q ss_pred hhhhcccCCCceeeeEEEecCcccCCCCh----HHhcccc-CCcEEeCCCCCCccc-ccccCCC-----CCCcEEeecCC
Q 044931 573 MITAKSKRGGFVLLTVLDLEGVYKLKLSD----DVIGKLL-NLRYLGLRSTFIDSL-PKSVGIL-----PRLETLDVKHT 641 (889)
Q Consensus 573 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~ 641 (889)
.++.+. . ..++|+.|+|++|.+...+. ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|+|++|
T Consensus 13 ~~~~~~-~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 13 PVEEFT-S-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHHH-T-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHHH-h-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 444555 3 55669999999999998876 5788888 899999999998855 4556654 89999999999
Q ss_pred CcccCch-hhhh----c-ccccccccccccCC
Q 044931 642 KLRFLPD-SIWK----A-KKLQHLYLNWIHSP 667 (889)
Q Consensus 642 ~l~~lp~-~i~~----L-~~L~~L~l~~~~~~ 667 (889)
.++..+. .+.. + ++|++|++++|...
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 9886543 3443 4 89999999987643
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=152.08 Aligned_cols=85 Identities=19% Similarity=0.068 Sum_probs=40.5
Q ss_pred CceeeeEEEecCcccCCCCh----HHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCccc---Cch--hhh
Q 044931 582 GFVLLTVLDLEGVYKLKLSD----DVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRF---LPD--SIW 651 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~----~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~---lp~--~i~ 651 (889)
.+++|++|+|++|.+....+ ..+..+++|++|+|++|.+..+| ..++.+++|++|+|++|++.. +|. .+.
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 45555555555555543211 12334555555555555555443 345555555555555554432 221 123
Q ss_pred hcccccccccccccC
Q 044931 652 KAKKLQHLYLNWIHS 666 (889)
Q Consensus 652 ~L~~L~~L~l~~~~~ 666 (889)
++++|++|++++|..
T Consensus 195 ~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 195 KFPAIQNLALRNTGM 209 (310)
T ss_dssp SSCCCCSCBCCSSCC
T ss_pred cCCCCCEEECCCCCC
Confidence 455555555555443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1.2e-14 Score=154.33 Aligned_cols=195 Identities=18% Similarity=0.187 Sum_probs=148.9
Q ss_pred ceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccc
Q 044931 583 FVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLN 662 (889)
Q Consensus 583 l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 662 (889)
+..+..+.+..+.+..... +..+.+|++|++++|.+..+| .+..+++|++|++++|+++.+|. +.++++|++|+++
T Consensus 23 l~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence 3344445566666665543 678999999999999999996 58999999999999999999987 9999999999999
Q ss_pred cccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccc
Q 044931 663 WIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARV 742 (889)
Q Consensus 663 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~ 742 (889)
+|....++ .+..+++|+.|+++++.
T Consensus 99 ~n~l~~~~--------------------------~l~~l~~L~~L~L~~n~----------------------------- 123 (291)
T 1h6t_A 99 ENKVKDLS--------------------------SLKDLKKLKSLSLEHNG----------------------------- 123 (291)
T ss_dssp SSCCCCGG--------------------------GGTTCTTCCEEECTTSC-----------------------------
T ss_pred CCcCCCCh--------------------------hhccCCCCCEEECCCCc-----------------------------
Confidence 87543221 13445555666655442
Q ss_pred cccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEE
Q 044931 743 TTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLK 822 (889)
Q Consensus 743 ~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 822 (889)
+..++ .+..+ ++|+.|++++|.+.+. +.++.+++|+.|++++|.+.... + +..+++|+.|+
T Consensus 124 -----------i~~~~--~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 124 -----------ISDIN--GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLY 184 (291)
T ss_dssp -----------CCCCG--GGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEE
T ss_pred -----------CCCCh--hhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch-h--hcCCCccCEEE
Confidence 11122 34445 8999999999998753 78999999999999988876633 2 78899999999
Q ss_pred ccccCCCcceecccCcccccceeecccccCCCCCCCc
Q 044931 823 LWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQ 859 (889)
Q Consensus 823 l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~ 859 (889)
+++|. +..++. +..+++|+.|++++ +.+. ..|.
T Consensus 185 L~~N~-i~~l~~-l~~l~~L~~L~l~~-n~i~-~~~~ 217 (291)
T 1h6t_A 185 LSKNH-ISDLRA-LAGLKNLDVLELFS-QECL-NKPI 217 (291)
T ss_dssp CCSSC-CCBCGG-GTTCTTCSEEEEEE-EEEE-CCCE
T ss_pred CCCCc-CCCChh-hccCCCCCEEECcC-Cccc-CCcc
Confidence 99997 666764 78899999999999 6676 4553
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=7.4e-14 Score=160.79 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=136.6
Q ss_pred eeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWI 664 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 664 (889)
+|+.|+|++|.++.+|. .+ +++|++|+|++|.++.+| +.+++|++|++++|+++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~-~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD-NL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCS-CC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCH-hH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 78888999888888877 45 378899999998888888 457888999999888888887 554 8888888876
Q ss_pred cCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCccccc
Q 044931 665 HSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTT 744 (889)
Q Consensus 665 ~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~ 744 (889)
....+|. .+++|+.|+++++.
T Consensus 131 ~l~~lp~----------------------------~l~~L~~L~Ls~N~------------------------------- 151 (571)
T 3cvr_A 131 QLTMLPE----------------------------LPALLEYINADNNQ------------------------------- 151 (571)
T ss_dssp CCSCCCC----------------------------CCTTCCEEECCSSC-------------------------------
T ss_pred cCCCCCC----------------------------cCccccEEeCCCCc-------------------------------
Confidence 5433332 12344444444331
Q ss_pred cccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcc------
Q 044931 745 LQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQL------ 818 (889)
Q Consensus 745 L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L------ 818 (889)
+..+|. .+++|+.|+|++|.+++ .+. +. ++|+.|+|++|.+.. ++. +.. +|
T Consensus 152 ---------l~~lp~-----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~--lp~-~~~--~L~~~~~~ 208 (571)
T 3cvr_A 152 ---------LTMLPE-----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES--LPA-VPV--RNHHSEET 208 (571)
T ss_dssp ---------CSCCCC-----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS--CCC-CC----------C
T ss_pred ---------cCcCCC-----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc--hhh-HHH--hhhccccc
Confidence 122332 23788999999998875 333 54 899999999887763 333 322 66
Q ss_pred -cEEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhh
Q 044931 819 -RVLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLT 865 (889)
Q Consensus 819 -~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~ 865 (889)
+.|+|++|. +..+|..+..+++|+.|++++ |.+++.+|..+..++
T Consensus 209 L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 209 EIFFRCRENR-ITHIPENILSLDPTCTIILED-NPLSSRIRESLSQQT 254 (571)
T ss_dssp CEEEECCSSC-CCCCCGGGGGSCTTEEEECCS-SSCCHHHHHHHHHHH
T ss_pred ceEEecCCCc-ceecCHHHhcCCCCCEEEeeC-CcCCCcCHHHHHHhh
Confidence 999999997 678998888899999999999 778867888887776
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.7e-13 Score=142.17 Aligned_cols=176 Identities=19% Similarity=0.114 Sum_probs=121.4
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCch-hhhhccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYL 661 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l 661 (889)
...+.++++++.++.+|. .+. .+|++|+|++|.+..++. .+.++++|++|+|++|.++.++. .+.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 446778888888887776 444 578888888888876653 57788888888888888777654 3677888888888
Q ss_pred ccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecccCCcc
Q 044931 662 NWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEAR 741 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~ 741 (889)
++|.....|. ..+..+++|+.|+++++.
T Consensus 91 ~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~N~---------------------------- 118 (251)
T 3m19_A 91 ANNQLASLPL------------------------GVFDHLTQLDKLYLGGNQ---------------------------- 118 (251)
T ss_dssp TTSCCCCCCT------------------------TTTTTCTTCCEEECCSSC----------------------------
T ss_pred CCCcccccCh------------------------hHhcccCCCCEEEcCCCc----------------------------
Confidence 7765433221 112333444444444331
Q ss_pred ccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 742 VTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 742 ~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
+..+|...+..+ ++|+.|+|++|.+....+..++.+++|+.|+|++|.+.. ..+..+..+++|+.|
T Consensus 119 ------------l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 119 ------------LKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTI 184 (251)
T ss_dssp ------------CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred ------------CCCcChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEE
Confidence 122333133445 899999999999886666678999999999999887764 333456788999999
Q ss_pred EccccCC
Q 044931 822 KLWNLFS 828 (889)
Q Consensus 822 ~l~~~~~ 828 (889)
++++|+.
T Consensus 185 ~l~~N~~ 191 (251)
T 3m19_A 185 TLFGNQF 191 (251)
T ss_dssp ECCSCCB
T ss_pred EeeCCce
Confidence 9999874
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=9.6e-14 Score=151.74 Aligned_cols=219 Identities=13% Similarity=0.032 Sum_probs=128.7
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc-cccc-ccCCCCCCcE-EeecCCCcccCch-hhhhccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID-SLPK-SVGILPRLET-LDVKHTKLRFLPD-SIWKAKKLQHL 659 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~-~lp~-~i~~L~~L~~-L~L~~~~l~~lp~-~i~~L~~L~~L 659 (889)
++++.|+|++|.|+.+|++.|.+|++|++|+|++|.+. .+|. .+.+|++|+. +.+++|+++.+|. .+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 46788899999988888767888999999999888874 4653 5678888775 5555678888854 56788899999
Q ss_pred ccccccCCCCCCC-cccccccccccccccccCCCccccCCCCC-CCCCeeecccCchhhHHHHHhhhcccccccceeccc
Q 044931 660 YLNWIHSPIDGLS-LSSLNNLQTLWGLSIESYTPFRQSDSTKW-PRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIEY 737 (889)
Q Consensus 660 ~l~~~~~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l 737 (889)
++++|.....|.. +....++..|.....+.........+..+ ..++.|.++++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N------------------------- 164 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN------------------------- 164 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-------------------------
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-------------------------
Confidence 9988876555432 22333343342222121111111122222 12333444333
Q ss_pred CCccccccccccccccccccccccccccCCCccEEEeec-cCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCC
Q 044931 738 GEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSM-SRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFP 816 (889)
Q Consensus 738 ~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~ 816 (889)
.+..+|. ..... .+|+.|.+.+ |.+...+...++.+++|+.|+|++|.+.. ++ .+.|.
T Consensus 165 ---------------~i~~i~~-~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~--lp--~~~~~ 223 (350)
T 4ay9_X 165 ---------------GIQEIHN-SAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LP--SYGLE 223 (350)
T ss_dssp ---------------CCCEECT-TSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC--CC--SSSCT
T ss_pred ---------------cccCCCh-hhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc--cC--hhhhc
Confidence 2233443 22223 4566666654 34443333456667777777777665543 21 23466
Q ss_pred cccEEEccccCCCcceecccCcccccceeeccc
Q 044931 817 QLRVLKLWNLFSLEEWTVEKGAMPRLRELEIRS 849 (889)
Q Consensus 817 ~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~ 849 (889)
+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 224 ~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 666666666666666663 55667777776644
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.2e-13 Score=159.09 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=137.3
Q ss_pred ccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccc
Q 044931 547 HLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKS 626 (889)
Q Consensus 547 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~ 626 (889)
+|+.|++.+|.+.+.+ .. -+++|+.|+|++|.++.+| +.+++|++|+|++|.++.+|.
T Consensus 60 ~L~~L~Ls~n~L~~lp------------~~-----l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP------------DN-----LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE- 117 (571)
T ss_dssp TCSEEECCSSCCSCCC------------SC-----CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-
T ss_pred CccEEEeCCCCCCccC------------Hh-----HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-
Confidence 8899999998875422 11 2357999999999999887 457899999999999999998
Q ss_pred cCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCe
Q 044931 627 VGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIK 706 (889)
Q Consensus 627 i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 706 (889)
+++ +|++|+|++|+++.+|. .+++|++|++++|....+|. .+++|+.
T Consensus 118 l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----------------------------~l~~L~~ 164 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----------------------------LPTSLEV 164 (571)
T ss_dssp CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----------------------------CCTTCCE
T ss_pred hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----------------------------cCCCcCE
Confidence 766 99999999999999997 78999999999876443332 1234444
Q ss_pred eecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCCCCCchh
Q 044931 707 LGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPL 786 (889)
Q Consensus 707 L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 786 (889)
|+++++. +..+|. +.++|+.|+|++|.++. .+.
T Consensus 165 L~Ls~N~----------------------------------------L~~lp~-----l~~~L~~L~Ls~N~L~~-lp~- 197 (571)
T 3cvr_A 165 LSVRNNQ----------------------------------------LTFLPE-----LPESLEALDVSTNLLES-LPA- 197 (571)
T ss_dssp EECCSSC----------------------------------------CSCCCC-----CCTTCCEEECCSSCCSS-CCC-
T ss_pred EECCCCC----------------------------------------CCCcch-----hhCCCCEEECcCCCCCc-hhh-
Confidence 5544431 122342 12788899999998873 333
Q ss_pred hhcCCCC-------CeEEeecCccCCCcceeCCCCCCcccEEEccccCCCcceecccCccc
Q 044931 787 LEELAHL-------NILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWTVEKGAMP 840 (889)
Q Consensus 787 l~~L~~L-------~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp 840 (889)
+.. +| +.|+|++|.+.. ++..+..+++|+.|+|++|+.....|..+..++
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 433 66 999999888764 555666799999999999996666666555443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=5.7e-14 Score=163.63 Aligned_cols=80 Identities=20% Similarity=0.113 Sum_probs=45.6
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.++.|+.|++++|.+..++ .++.|++|++|+|++|.+..+|. ++.|++|+.|+|++|.+..+| .+..+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 4555555666666555554 25556666666666665555554 555666666666666555554 4555555666655
Q ss_pred cccc
Q 044931 662 NWIH 665 (889)
Q Consensus 662 ~~~~ 665 (889)
++|.
T Consensus 117 s~N~ 120 (605)
T 1m9s_A 117 EHNG 120 (605)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 5544
No 104
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.47 E-value=1.3e-14 Score=128.44 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHhhhhhccccccccC----cccchhh-----hhhhhhhhHHHHHHH
Q 044931 5 AFVSRLYNQLENLLREESTGSDPRFQEQVQEASRYLPSLEEFPEDDVGS----ASGVLLQ-----LQAVYLVEDVTDTLL 75 (889)
Q Consensus 5 ~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~----~~~~~~~-----~~~~yd~eD~lD~~~ 75 (889)
|+|+++++|+++++.+|+ .++.||++++++|+++|.+|++||.||+.+ .|+.++. ||+|||||||||+|.
T Consensus 1 a~v~~ll~KL~~ll~~E~-~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEF-KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp CTTCSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999 999999999999999999999999999886 4555543 999999999999999
Q ss_pred HHHHHH
Q 044931 76 VLKQFL 81 (889)
Q Consensus 76 ~~~~~~ 81 (889)
+ +...
T Consensus 80 ~-~~~~ 84 (115)
T 3qfl_A 80 V-QVDG 84 (115)
T ss_dssp H-HHHH
T ss_pred H-Hhcc
Confidence 9 7764
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.3e-13 Score=160.68 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=88.5
Q ss_pred ccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 541 EWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 541 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
....+++|+.|.+.+|.+.. ++.+ . .+++|+.|+|++|.+..+++ +..|++|++|+|++|.+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~-------------l~~l--~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS-------------VQGI--Q-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC-------------CTTG--G-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred chhcCCCCCEEECcCCCCCC-------------ChHH--c-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 35677888999998888753 2333 3 88899999999999988876 88999999999999999
Q ss_pred cccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCC
Q 044931 621 DSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSP 667 (889)
Q Consensus 621 ~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 667 (889)
..+| .++.|++|+.|+|++|.+..+| .+..|++|+.|++++|...
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred CCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC
Confidence 8876 7889999999999999888875 5888999999999887644
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=4.9e-13 Score=138.70 Aligned_cols=153 Identities=25% Similarity=0.253 Sum_probs=114.5
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP- 624 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp- 624 (889)
++++.|++.+|.+.. ..+..+ . .+++|++|+|++|.+..+++..|.++++|++|+|++|.++.+|
T Consensus 35 ~~l~~L~L~~n~l~~------------~~~~~~-~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT------------LSDATF-R-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCEEECTTSCCCC------------CCTTTT-T-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCEEEccCCCcCc------------cCHhHh-c-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 578888888888754 223334 4 7888888888888888877756888888888888888888776
Q ss_pred cccCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccCCCCCC-CcccccccccccccccccCCCccccCCCCCC
Q 044931 625 KSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHSPIDGL-SLSSLNNLQTLWGLSIESYTPFRQSDSTKWP 702 (889)
Q Consensus 625 ~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~ 702 (889)
..+..+++|++|+|++|+++.+|.. +..+++|++|++++|.....|. .++.+++|+.|. +..+.........+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS-LSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE-CCCCcCCccCHHHHhCCC
Confidence 4567888888888888888888765 5778888888888887665555 467777777773 333433443445677888
Q ss_pred CCCeeecccCc
Q 044931 703 RLIKLGVKCDS 713 (889)
Q Consensus 703 ~L~~L~l~~~~ 713 (889)
+|+.|++.++.
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 88888888775
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=3.8e-13 Score=135.20 Aligned_cols=76 Identities=25% Similarity=0.273 Sum_probs=48.2
Q ss_pred eEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccc-cCCCCCCcEEeecCCCcccCchh-hhhcccccccccccc
Q 044931 587 TVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKS-VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWI 664 (889)
Q Consensus 587 r~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 664 (889)
+.++++++.++.+|. .+ ..+|++|+|++|.++.+|.. +.++++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCC-CC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456666666666665 32 34677777777777766543 56677777777777777666653 456666666666654
Q ss_pred c
Q 044931 665 H 665 (889)
Q Consensus 665 ~ 665 (889)
.
T Consensus 87 ~ 87 (208)
T 2o6s_A 87 Q 87 (208)
T ss_dssp C
T ss_pred c
Confidence 3
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=5.9e-14 Score=154.27 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=156.4
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCce-eeeEEEecCcccCCCChHHhccc-----cCCcEEeCC
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFV-LLTVLDLEGVYKLKLSDDVIGKL-----LNLRYLGLR 616 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~l~~~~i~~l-----~~Lr~L~L~ 616 (889)
...++|++|++++|.+...... .+...+ . .++ +|++|+|++|.+.......+..+ .+|++|+|+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~l-~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTV--------ELIQAF-A-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHH--------HHHHHH-H-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred hCCCCceEEEccCCCCChHHHH--------HHHHHH-H-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 3455699999999988654432 122333 4 777 89999999999998766577776 999999999
Q ss_pred CCCCcccc-cc----cCCC-CCCcEEeecCCCcccCch-hhhh-----cccccccccccccCCCCCCCcccccccccccc
Q 044931 617 STFIDSLP-KS----VGIL-PRLETLDVKHTKLRFLPD-SIWK-----AKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWG 684 (889)
Q Consensus 617 ~~~i~~lp-~~----i~~L-~~L~~L~L~~~~l~~lp~-~i~~-----L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~ 684 (889)
+|.++..+ .. +..+ ++|++|++++|.++..+. .+.. .++|++|++++|..... +...
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--~~~~--------- 157 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--SSDE--------- 157 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--CHHH---------
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--HHHH---------
Confidence 99998554 32 5555 899999999999987764 3333 25899999998753211 0000
Q ss_pred cccccCCCccccCCCCCC-CCCeeecccCch-hhH----HHHHhhhcccccccceecccCCcccccccccccccc-ccc-
Q 044931 685 LSIESYTPFRQSDSTKWP-RLIKLGVKCDSQ-MAI----EFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGS-IHS- 756 (889)
Q Consensus 685 ~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~-~~l----~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~-~~~- 756 (889)
....+..++ +|+.|+++++.. ... ...+...+ ++|+.|+++++ +..
T Consensus 158 ---------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-----------------~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 158 ---------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP-----------------ASVTSLDLSANLLGLK 211 (362)
T ss_dssp ---------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC-----------------TTCCEEECTTSCGGGS
T ss_pred ---------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCC-----------------CCCCEEECCCCCCChh
Confidence 011112232 677888887764 222 22333331 24444444432 222
Q ss_pred ----cccccccccCCCccEEEeeccCCCCCCchh----hhcCCCCCeEEeecCccCCC------cceeCCCCCCcccEEE
Q 044931 757 ----FFDYGIEWNYPNLKILTLSMSRLVYDPMPL----LEELAHLNILRLYRGAYLGE------ETTCSSGGFPQLRVLK 822 (889)
Q Consensus 757 ----~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~----l~~L~~L~~L~L~~~~~~~~------~~~~~~~~~~~L~~L~ 822 (889)
++. .+...+++|+.|+|++|.+....... +..+++|+.|+|++|.+... .+...+..+++|+.|+
T Consensus 212 ~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 212 SYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp CHHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred HHHHHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 444 44444368999999999988665533 35678999999998763321 1223456788899999
Q ss_pred ccccCCCcc
Q 044931 823 LWNLFSLEE 831 (889)
Q Consensus 823 l~~~~~l~~ 831 (889)
+++|..-..
T Consensus 291 L~~N~l~~~ 299 (362)
T 3goz_A 291 KNGKEIHPS 299 (362)
T ss_dssp TTSCBCCGG
T ss_pred cCCCcCCCc
Confidence 998874333
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=2.2e-13 Score=142.16 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=51.0
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYL 661 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 661 (889)
.+..+..++++++.++.++ .+..+.+|++|++++|.++.+| .++.+++|++|++++|+++.+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3445555666666666554 3566666666666666666665 56666666666666666666665 666666666666
Q ss_pred ccccC
Q 044931 662 NWIHS 666 (889)
Q Consensus 662 ~~~~~ 666 (889)
++|..
T Consensus 93 ~~N~l 97 (263)
T 1xeu_A 93 NRNRL 97 (263)
T ss_dssp CSSCC
T ss_pred CCCcc
Confidence 66543
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=1.1e-14 Score=168.52 Aligned_cols=120 Identities=23% Similarity=0.224 Sum_probs=93.2
Q ss_pred ccccccccccc-ccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEE
Q 044931 743 TTLQELYLRGS-IHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVL 821 (889)
Q Consensus 743 ~~L~~L~l~~~-~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 821 (889)
..|+.|+++++ +..+| .++.+ ++|+.|+|++|.+. ..+..++.|++|+.|+|++|.+.+ ++ .++.+++|+.|
T Consensus 441 ~~L~~L~Ls~n~l~~lp--~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L 513 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLC--HLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL 513 (567)
T ss_dssp TTCSEEECTTSCCSSCC--CGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred cCceEEEecCCCCCCCc--Ccccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence 35777777764 45666 36666 89999999999987 667788999999999999888765 44 67889999999
Q ss_pred EccccCCCcce--ecccCcccccceeecccccCCCCCCCcch----hhhhcccceEEe
Q 044931 822 KLWNLFSLEEW--TVEKGAMPRLRELEIRSCNNLKPPQPQGL----QNLTNTLKEFVL 873 (889)
Q Consensus 822 ~l~~~~~l~~~--~~~~~~lp~L~~L~l~~C~~L~~~lp~~l----~~l~~~L~~L~l 873 (889)
+|++|. +..+ |..++.+++|+.|++++ |.++ .+|..+ ..+| +|+.|++
T Consensus 514 ~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~-N~l~-~~~~~~~~l~~~lp-~L~~L~l 567 (567)
T 1dce_A 514 LLCNNR-LQQSAAIQPLVSCPRLVLLNLQG-NSLC-QEEGIQERLAEMLP-SVSSILT 567 (567)
T ss_dssp ECCSSC-CCSSSTTGGGGGCTTCCEEECTT-SGGG-GSSSCTTHHHHHCT-TCSEEEC
T ss_pred ECCCCC-CCCCCCcHHHhcCCCCCEEEecC-CcCC-CCccHHHHHHHHCc-ccCccCC
Confidence 999987 5555 78888999999999998 7788 555433 3467 8888764
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=8.8e-13 Score=132.51 Aligned_cols=83 Identities=33% Similarity=0.420 Sum_probs=41.9
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccc-cCCCCCCcEEeecCCCcccCchh-hhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKS-VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 659 (889)
.+++|++|++++|.+..+++..|..+++|++|+|++|.++.+|.. +.++++|++|++++|+++.+|.. +.++++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 455555555555555554443345555555555555555544432 34555555555555555544433 3445555555
Q ss_pred ccccc
Q 044931 660 YLNWI 664 (889)
Q Consensus 660 ~l~~~ 664 (889)
++++|
T Consensus 130 ~l~~N 134 (208)
T 2o6s_A 130 RLYQN 134 (208)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55444
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.35 E-value=5.3e-11 Score=129.97 Aligned_cols=279 Identities=14% Similarity=0.118 Sum_probs=164.0
Q ss_pred cccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc------cHHH
Q 044931 169 EQEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA------KVRD 242 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~------~~~~ 242 (889)
.....||||+++++.|.+++..+ +++.|+|++|+|||||++++++. . + .+|+++.... +...
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREE 76 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHH
Confidence 34578999999999999998752 68999999999999999999984 2 2 6777765443 4556
Q ss_pred HHHHHHHHhhhh---------------hc-ccCCCCHHHHHHhHh------------hhh------------HHhHHHHH
Q 044931 243 VLIDILQQINDE---------------ML-VEASSPEEELASSLA------------TLT------------QQVWQVLR 282 (889)
Q Consensus 243 ~~~~i~~~l~~~---------------~~-~~~~~~~~~l~~~l~------------v~~------------~~~~~~l~ 282 (889)
++..+.+.+... .. +.......++...+. +++ .+.+..+.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 666666554320 00 001123333322221 111 11223333
Q ss_pred hhhccCCCCCCCcEEEEEcCCCCCc-cc---------ccccC-CCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCCh
Q 044931 283 NSLYYSSSKSRDGKIILTTSDENNI-PL---------EAKAA-GSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNS 351 (889)
Q Consensus 283 ~~l~~~~~~~~gs~iivTTR~~~~v-~~---------~~~~~-~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~ 351 (889)
..+... ++.++|+|++... + .. ...+. ...+++.+|+.+|+.+++..... ..+. .
T Consensus 157 ~~~~~~----~~~~~il~g~~~~-~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~-~~~~--------~ 222 (350)
T 2qen_A 157 YAYDSL----PNLKIILTGSEVG-LLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR-EVNL--------D 222 (350)
T ss_dssp HHHHHC----TTEEEEEEESSHH-HHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH-TTTC--------C
T ss_pred HHHHhc----CCeEEEEECCcHH-HHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH-HcCC--------C
Confidence 333322 4778999987643 2 11 11111 14789999999999999987643 2111 1
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHhhhhhcccCCChhhHH-HHHHhcccCCCchhhHHHHHHhhccc---cccchhhhhhh
Q 044931 352 ELVTFKERILKKCGGLPIRIVLLGGLLSATKGRNFQKWS-SVIERADVDKSDGWVSGLLALSYQEL---PSKLKPFFFYM 427 (889)
Q Consensus 352 ~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~~w~-~~l~~l~~~~~~~~i~~~l~~Sy~~L---~~~~k~cf~~~ 427 (889)
-..+.+..|++.|+|.|+++..++..+..... ...+. .+.+ .+...+.-.+..+ ++..+..+..+
T Consensus 223 ~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~l~~l~~~~~~~~~~l~~l 291 (350)
T 2qen_A 223 VPENEIEEAVELLDGIPGWLVVFGVEYLRNGD--FGRAMKRTLE---------VAKGLIMGELEELRRRSPRYVDILRAI 291 (350)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--HHHHHHHHHH---------HHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHhcccc--HhHHHHHHHH---------HHHHHHHHHHHHHHhCChhHHHHHHHH
Confidence 12356789999999999999999876533211 22221 1111 1112222222333 67788899888
Q ss_pred ccCCCCcccchhhhhhhhcccCCcCCCchhHHHHHHHHHHHhcceeeeccccCCCcceeec-ChhHHHhhh
Q 044931 428 WFFPRAFEIPVRRLICLWCTEPFVAPIDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCRL-PTVLYDVFS 497 (889)
Q Consensus 428 s~Fp~~~~i~~~~Li~~w~a~g~i~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~m-Hdlv~~~~~ 497 (889)
|. .. ++...+.....+. .- .........+++.|.+.+++.... ..|++ |.+++++.+
T Consensus 292 a~--g~--~~~~~l~~~~~~~-~~-~~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 292 AL--GY--NRWSLIRDYLAVK-GT-KIPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVLR 349 (350)
T ss_dssp HT--TC--CSHHHHHHHHHHT-TC-CCCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHHT
T ss_pred Hh--CC--CCHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHHc
Confidence 87 21 3444444332111 00 123456788999999999998652 13554 667777653
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.8e-12 Score=129.00 Aligned_cols=149 Identities=17% Similarity=0.111 Sum_probs=83.5
Q ss_pred ccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc
Q 044931 543 SWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS 622 (889)
Q Consensus 543 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~ 622 (889)
..+++|++|.+++|.+.. ++.+ . .+++|++|++++|.+..++ .+..+++|++|++++|.++.
T Consensus 41 ~~l~~L~~L~l~~n~i~~-------------l~~l--~-~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~ 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-------------LTGI--E-YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTS 102 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-------------CTTG--G-GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBG
T ss_pred hhcCCccEEeccCCCccC-------------hHHH--h-cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCc
Confidence 455666666666665531 1222 2 5666666666666554433 46666666666666666663
Q ss_pred -cccccCCCCCCcEEeecCCCccc-Cchhhhhccccccccccccc-CCCCCCCcccccccccccccccccCCCccccCCC
Q 044931 623 -LPKSVGILPRLETLDVKHTKLRF-LPDSIWKAKKLQHLYLNWIH-SPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDST 699 (889)
Q Consensus 623 -lp~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~-~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~ 699 (889)
.|..++.+++|++|++++|.++. .|..+..+++|++|++++|. ...+| .++.+++|+.|. +..+....+..+.
T Consensus 103 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~---l~~n~i~~~~~l~ 178 (197)
T 4ezg_A 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN---IQFDGVHDYRGIE 178 (197)
T ss_dssp GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE---CTTBCCCCCTTGG
T ss_pred ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE---CCCCCCcChHHhc
Confidence 45566666666666666666663 45556666666666666665 44433 344455554442 2221111223455
Q ss_pred CCCCCCeeecccCc
Q 044931 700 KWPRLIKLGVKCDS 713 (889)
Q Consensus 700 ~l~~L~~L~l~~~~ 713 (889)
.+++|+.|++.++.
T Consensus 179 ~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 DFPKLNQLYAFSQT 192 (197)
T ss_dssp GCSSCCEEEECBC-
T ss_pred cCCCCCEEEeeCcc
Confidence 66667777766653
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.33 E-value=3.7e-11 Score=134.47 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=163.4
Q ss_pred cccccchhhhHHHHHHHH-hcc--C--CCCceEEEE--ECCCCCcHHHHHHHHhcccccccc-----CC-ceEEEEeCCc
Q 044931 171 EINLVGLEEQINNLVSLL-IRE--H--NHNSQVIAI--VGEAGSGKTTLTRSVYDRVDVKRH-----FA-KRAWVRVRSE 237 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L-~~~--~--~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~~~-----F~-~~~wv~v~~~ 237 (889)
+..++||+++++.|.++| ... + . ..+.+.| +|++|+||||||+.+++. .... |+ .++|+.....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~-~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGL-SDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCB-CCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCC-CCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCC
Confidence 378999999999999998 431 1 1 3456666 999999999999999984 3321 23 3577877677
Q ss_pred ccHHHHHHHHHHHhhhhhcccCCCCHHHH----HHhHh------------hhh--------HHhHHHHHhhhccCCCCC-
Q 044931 238 AKVRDVLIDILQQINDEMLVEASSPEEEL----ASSLA------------TLT--------QQVWQVLRNSLYYSSSKS- 292 (889)
Q Consensus 238 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~l----~~~l~------------v~~--------~~~~~~l~~~l~~~~~~~- 292 (889)
.+...++..++.+++.... ........+ ...+. ++. .+.+..+...+......+
T Consensus 98 ~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQ-VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCC-CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 7888899999988865322 111222222 22221 111 122333333332220001
Q ss_pred -CCcEEEEEcCCCCCcccccc--------cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHH
Q 044931 293 -RDGKIILTTSDENNIPLEAK--------AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKK 363 (889)
Q Consensus 293 -~gs~iivTTR~~~~v~~~~~--------~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~ 363 (889)
.+..||+||+... +...+. .....+++++++.++++++|...+. ..... ... ..+....|++.
T Consensus 177 ~~~v~lI~~~~~~~-~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~-~~~~~--~~~----~~~~~~~i~~~ 248 (412)
T 1w5s_A 177 VNRIGFLLVASDVR-ALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAE-LGLRD--TVW----EPRHLELISDV 248 (412)
T ss_dssp CCBEEEEEEEEETH-HHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH-HHBCT--TSC----CHHHHHHHHHH
T ss_pred CceEEEEEEecccc-HHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH-hcCCC--CCC----ChHHHHHHHHH
Confidence 2345888887655 332111 1113399999999999999986542 11100 011 24567788888
Q ss_pred hC------CCchHHHHHhhhh---hcc---cCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhccCC
Q 044931 364 CG------GLPIRIVLLGGLL---SAT---KGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMWFFP 431 (889)
Q Consensus 364 c~------GlPLai~~~g~~L---~~~---~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp 431 (889)
|+ |.|..+..++... ... ..-+...+..++..... ...+.-++..||.+.+.++..++.+.
T Consensus 249 ~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 249 YGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp HCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 9997655544321 111 11113334444332210 23344567889999999998888654
Q ss_pred --CCcccchhhhhhhhc--c---cCCcCCCchhHHHHHHHHHHHhcceeeec
Q 044931 432 --RAFEIPVRRLICLWC--T---EPFVAPIDTDLAETYFEELVIRNLIHVTK 476 (889)
Q Consensus 432 --~~~~i~~~~Li~~w~--a---~g~i~~~~e~~~~~~l~~L~~rsll~~~~ 476 (889)
.+..++...+...+. + .|. ..........+++.|.+.+++....
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 322 LGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 233455544443331 1 121 1223455678999999999998764
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.3e-12 Score=156.22 Aligned_cols=106 Identities=25% Similarity=0.235 Sum_probs=81.2
Q ss_pred hhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhc
Q 044931 574 ITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKA 653 (889)
Q Consensus 574 ~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L 653 (889)
++..+ . .++.|++|+|++|.+..++. .+.++.+|++|+|++|.|+.+|..|++|++|++|+|++|.|+.+|..+++|
T Consensus 216 ~~~~~-~-~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSK-Y-DDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred Chhhh-c-cCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34444 4 88889999999999888888 777889999999999988888888889999999999999888888888889
Q ss_pred ccccccccccccCCCCCCCcccccccccc
Q 044931 654 KKLQHLYLNWIHSPIDGLSLSSLNNLQTL 682 (889)
Q Consensus 654 ~~L~~L~l~~~~~~~~~~~i~~l~~L~~L 682 (889)
++|++|+|++|....+|..++.+++|+.|
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCE
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEE
Confidence 99999999887655555444444444333
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=8.4e-12 Score=127.24 Aligned_cols=112 Identities=22% Similarity=0.167 Sum_probs=80.3
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.++|+.|++++|.+.. ..+..| . .+++|++|+|++|.+..+++..|..+++|++|+|++|.++.+|
T Consensus 39 ~~~L~~L~Ls~n~i~~------------~~~~~~-~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 39 PTNAQILYLHDNQITK------------LEPGVF-D-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp CTTCSEEECCSSCCCC------------CCTTTT-T-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCEEEcCCCccCc------------cCHHHh-h-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 4778888888777754 223344 4 7777888888888877777656677788888888888777776
Q ss_pred cc-cCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCC
Q 044931 625 KS-VGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDG 670 (889)
Q Consensus 625 ~~-i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 670 (889)
.. +..+++|++|+|++|+++.+|..+..+++|++|++++|....++
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence 44 56777888888888877777777777788888887776544333
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=8.4e-12 Score=120.58 Aligned_cols=137 Identities=19% Similarity=0.050 Sum_probs=107.3
Q ss_pred CccceeeeeeeeCCCC-CcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCC
Q 044931 520 PQFAVRRLATYLGVST-NFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLK 598 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 598 (889)
.+..++++.+..+... ...+..+..+++|+.|++++|.+.. . ..+ . .+++|++|++++|.+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------------~--~~~-~-~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------------V--SNL-P-KLPKLKKLELSENRIFG 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------------C--SSC-C-CCSSCCEEEEESCCCCS
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------------h--hhh-c-cCCCCCEEECcCCcCch
Confidence 4456788888755544 2344556888999999999998753 2 233 4 88999999999999887
Q ss_pred CChHHhccccCCcEEeCCCCCCcccc--cccCCCCCCcEEeecCCCcccCch----hhhhcccccccccccccCCCCCCC
Q 044931 599 LSDDVIGKLLNLRYLGLRSTFIDSLP--KSVGILPRLETLDVKHTKLRFLPD----SIWKAKKLQHLYLNWIHSPIDGLS 672 (889)
Q Consensus 599 l~~~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~~~~ 672 (889)
.++..+.++++|++|+|++|.++.+| ..++.+++|++|++++|.++.+|. .+..+++|++|++++|.....|..
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 34437778999999999999999876 688899999999999999988886 688899999999998876655543
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=4.5e-12 Score=129.25 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=116.8
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..++.+.+..+......+..+..+++|+.|++++|.+.. +.+..| . .+++|++|+|++|.++.+
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------i~~~~~-~-~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA------------LPVGVF-D-SLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTT-T-TCTTCCEEECCSSCCCCC
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC------------cChhhc-c-cCCCcCEEECCCCcCCcc
Confidence 45678899999777776666778899999999999999854 344555 5 899999999999999999
Q ss_pred ChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCC
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSP 667 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~ 667 (889)
++..|..+.+|++|+|++|.+..+|..+..+++|++|+|++|+++.+|. .+..+++|++|++.+|...
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8867899999999999999999999999999999999999999999985 4788999999999987643
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=3.8e-12 Score=126.59 Aligned_cols=131 Identities=15% Similarity=0.236 Sum_probs=105.0
Q ss_pred ccccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCccc
Q 044931 740 ARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLR 819 (889)
Q Consensus 740 ~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 819 (889)
..+++|+.|+++++....+. .+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+... .+..+..+++|+
T Consensus 63 ~~l~~L~~L~l~~n~~~~~~-~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~ 139 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHATNYN-PISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVN 139 (197)
T ss_dssp GGCTTCSEEEEESCCCSCCG-GGTTC-TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCC
T ss_pred hcCCCCCEEEccCCCCCcch-hhhcC-CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCC
Confidence 34667777888765433333 56666 9999999999999876788899999999999998877653 344567899999
Q ss_pred EEEccccCCCcceecccCcccccceeecccccCCCCCCCcchhhhhcccceEEeccCch
Q 044931 820 VLKLWNLFSLEEWTVEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLTNMPS 878 (889)
Q Consensus 820 ~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~~cp~ 878 (889)
.|++++|..+..++ .+..+++|+.|++++ +.++ .+| .+..++ +|+.|++++++-
T Consensus 140 ~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~-~~~-~l~~l~-~L~~L~l~~N~i 193 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVH-DYR-GIEDFP-KLNQLYAFSQTI 193 (197)
T ss_dssp EEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCC-CCT-TGGGCS-SCCEEEECBC--
T ss_pred EEEccCCCCccccH-hhcCCCCCCEEECCC-CCCc-ChH-HhccCC-CCCEEEeeCccc
Confidence 99999998677776 578899999999999 6788 677 788999 999999999773
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=3.6e-12 Score=132.91 Aligned_cols=147 Identities=17% Similarity=0.115 Sum_probs=95.9
Q ss_pred ccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 541 EWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 541 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
.+..+++|++|++.+|.+.. ++.+ . .+++|+.|+|++|.+..+++ ++++++|++|+|++|.+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-------------l~~l--~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-------------LAGM--Q-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-------------CTTG--G-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred chhhcCcCcEEECcCCCccc-------------chHH--h-hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 45667778888887776642 2222 3 67778888888888777765 77788888888888877
Q ss_pred cccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCC
Q 044931 621 DSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTK 700 (889)
Q Consensus 621 ~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 700 (889)
+.+|.... ++|++|++++|.++.+| .+.++++|++|++++|.....+ .++.+++|+.| ++..+.......+..
T Consensus 98 ~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L---~L~~N~i~~~~~l~~ 170 (263)
T 1xeu_A 98 KNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVL---DLHGNEITNTGGLTR 170 (263)
T ss_dssp SCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEE---ECTTSCCCBCTTSTT
T ss_pred CCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEE---ECCCCcCcchHHhcc
Confidence 77764333 77888888888777775 4777788888888777655443 45555555544 222222222245566
Q ss_pred CCCCCeeecccC
Q 044931 701 WPRLIKLGVKCD 712 (889)
Q Consensus 701 l~~L~~L~l~~~ 712 (889)
+++|+.|+++++
T Consensus 171 l~~L~~L~l~~N 182 (263)
T 1xeu_A 171 LKKVNWIDLTGQ 182 (263)
T ss_dssp CCCCCEEEEEEE
T ss_pred CCCCCEEeCCCC
Confidence 666666666654
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=1.5e-11 Score=124.55 Aligned_cols=110 Identities=22% Similarity=0.126 Sum_probs=73.5
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
++|+.|.+.+|.+.. +.+..| . .+++|++|+|++|.+..+++..|.++.+|++|+|++|.++.+|.
T Consensus 32 ~~l~~L~l~~n~i~~------------i~~~~~-~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV------------IPPGAF-S-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp TTCCEEECCSSCCCE------------ECTTSS-T-TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred cCCCEEECCCCcCCC------------cCHhHh-h-CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence 567777777776642 233344 4 67777777777777776654467777777777777777777765
Q ss_pred c-cCCCCCCcEEeecCCCcccCc-hhhhhcccccccccccccCCCC
Q 044931 626 S-VGILPRLETLDVKHTKLRFLP-DSIWKAKKLQHLYLNWIHSPID 669 (889)
Q Consensus 626 ~-i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~ 669 (889)
. +.++++|++|+|++|+++.++ ..+..+++|++|++++|.....
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 4 466777777777777777664 4566677777777777654433
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=1.6e-11 Score=124.20 Aligned_cols=127 Identities=15% Similarity=0.120 Sum_probs=63.7
Q ss_pred eeEEEecCcccCCCCh-HHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCchh-hhhcccccccccc
Q 044931 586 LTVLDLEGVYKLKLSD-DVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLN 662 (889)
Q Consensus 586 Lr~L~L~~~~i~~l~~-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~ 662 (889)
++.|+|++|.++.+++ ..|+++++|++|+|++|.++.+|. .+.++++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555554422 234555555555555555554443 455555555555555555554432 4455555555555
Q ss_pred cccCCCC-CCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCc
Q 044931 663 WIHSPID-GLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDS 713 (889)
Q Consensus 663 ~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 713 (889)
+|..... |..+..+++|+.| .+..+......+..+..+++|+.|++.++.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLL-SLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEE-ECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCeECHhHcCCCccCCEE-ECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 5543322 3344444444444 222222223334455666777777777665
No 123
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=1.9e-10 Score=125.88 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=160.9
Q ss_pred ccccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc-----ccHHHHH
Q 044931 170 QEINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE-----AKVRDVL 244 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~ 244 (889)
....||||+++++.|.+ +.. +++.|+|++|+|||||++++.+. ... ..+|+++... .+....+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHH
Confidence 45789999999999999 653 58999999999999999999984 322 3578887643 2344555
Q ss_pred HHHHHHhhhh-------------h----ccc----------CCCCHHHHHHhHh---------hhhHHh---------HH
Q 044931 245 IDILQQINDE-------------M----LVE----------ASSPEEELASSLA---------TLTQQV---------WQ 279 (889)
Q Consensus 245 ~~i~~~l~~~-------------~----~~~----------~~~~~~~l~~~l~---------v~~~~~---------~~ 279 (889)
..+.+.+... . .+. .......+...+. +.|+-. |.
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 5554444210 0 000 0123334433221 112111 11
Q ss_pred HHHhhhccCCCCCCCcEEEEEcCCCCCccc----------ccccC-CCeeeccCCChhhHHHHHHHHhcCCCccccCCCC
Q 044931 280 VLRNSLYYSSSKSRDGKIILTTSDENNIPL----------EAKAA-GSTLHVRRLNEEESWKLLLKRALLPRAAESDGLF 348 (889)
Q Consensus 280 ~l~~~l~~~~~~~~gs~iivTTR~~~~v~~----------~~~~~-~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~ 348 (889)
.+...+.+. ..+.++|+|+|... ... ..... ...+++.+|+.+|+.+++..... .... .
T Consensus 159 ~~l~~~~~~---~~~~~~i~~g~~~~-~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~-~~~~----~- 228 (357)
T 2fna_A 159 PALAYAYDN---LKRIKFIMSGSEMG-LLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ-EADI----D- 228 (357)
T ss_dssp HHHHHHHHH---CTTEEEEEEESSHH-HHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH-HHTC----C-
T ss_pred HHHHHHHHc---CCCeEEEEEcCchH-HHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH-HcCC----C-
Confidence 222222222 24678999998753 211 11111 15789999999999999987542 1111 1
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHHHhhhhhcccCCChhhHHH-HHHhcccCCCchhhHHHHH-Hhhc--cccccchhhh
Q 044931 349 NNSELVTFKERILKKCGGLPIRIVLLGGLLSATKGRNFQKWSS-VIERADVDKSDGWVSGLLA-LSYQ--ELPSKLKPFF 424 (889)
Q Consensus 349 ~~~~~~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~~~w~~-~l~~l~~~~~~~~i~~~l~-~Sy~--~L~~~~k~cf 424 (889)
+ ... ..|++.|+|.|+++..++..+..... ...|.. +.+... ..+...+. +.++ .||+..+..+
T Consensus 229 ~-~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~~~l 296 (357)
T 2fna_A 229 F-KDY----EVVYEKIGGIPGWLTYFGFIYLDNKN--LDFAINQTLEYAK-----KLILKEFENFLHGREIARKRYLNIM 296 (357)
T ss_dssp C-CCH----HHHHHHHCSCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHH-----HHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred C-CcH----HHHHHHhCCCHHHHHHHHHHHccccc--hHHHHHHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHH
Confidence 1 111 78999999999999999987654322 333321 111100 01111222 2211 6888899999
Q ss_pred hhhccCCCCcccchhhhhhhhc-ccCCcCCCchhHHHHHHHHHHHhcceeeeccccCCCcceee-cChhHHHhh
Q 044931 425 FYMWFFPRAFEIPVRRLICLWC-TEPFVAPIDTDLAETYFEELVIRNLIHVTKWRLDGTPKMCR-LPTVLYDVF 496 (889)
Q Consensus 425 ~~~s~Fp~~~~i~~~~Li~~w~-a~g~i~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~-mHdlv~~~~ 496 (889)
..+|. +. +...+..... ..|. .........+++.|++.+++.... ..|+ .|.+++++.
T Consensus 297 ~~la~---g~--~~~~l~~~~~~~~g~--~~~~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 297 RTLSK---CG--KWSDVKRALELEEGI--EISDSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHTT---CB--CHHHHHHHHHHHHCS--CCCHHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred HHHHc---CC--CHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 99998 21 3333332110 1120 123456788999999999997642 1355 477887764
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.25 E-value=1.2e-11 Score=125.12 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=113.2
Q ss_pred CccceeeeeeeeCCCCCcCCCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKL 599 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 599 (889)
.+..++.|.+..+......+..+..+++|+.|++++|.+.. ..+..| . .+++|++|+|++|.++.+
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~------------~~~~~~-~-~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE------------LAPDAF-Q-GLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE------------ECTTTT-T-TCSSCCEEECCSSCCCCC
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC------------cCHHHh-h-CCcCCCEEECCCCcCCcc
Confidence 34578899998666665555578899999999999998853 334555 5 999999999999999999
Q ss_pred ChHHhccccCCcEEeCCCCCCccc-ccccCCCCCCcEEeecCCCcccCchh-hhhccccccccccccc
Q 044931 600 SDDVIGKLLNLRYLGLRSTFIDSL-PKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIH 665 (889)
Q Consensus 600 ~~~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 665 (889)
++..|.++++|++|+|++|.++.+ |..+.++++|++|+|++|+++.+|.. +..+++|++|++++|.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 986789999999999999999977 46799999999999999999998864 8889999999999875
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=4.1e-12 Score=120.07 Aligned_cols=80 Identities=23% Similarity=0.141 Sum_probs=33.7
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc--cccCCCCCCcEEeecCCCcccCch----hhhhccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP--KSVGILPRLETLDVKHTKLRFLPD----SIWKAKK 655 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~ 655 (889)
.+++|++|++++|.+....+..++.+++|++|++++|.++.+| ..++.+++|++|++++|.++.+|. .+..+++
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 4444444444444444322213334444444444444444332 344444444444444444444433 2344444
Q ss_pred cccccc
Q 044931 656 LQHLYL 661 (889)
Q Consensus 656 L~~L~l 661 (889)
|++|++
T Consensus 142 L~~L~l 147 (149)
T 2je0_A 142 LTYLDG 147 (149)
T ss_dssp CCEETT
T ss_pred cccccC
Confidence 444443
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=1.8e-11 Score=134.19 Aligned_cols=82 Identities=23% Similarity=0.256 Sum_probs=58.9
Q ss_pred eeeEEEecCcccCCCChHHhc-cccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCch-hhhhccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDDVIG-KLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYL 661 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~~i~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l 661 (889)
.++.|+|++|.++.+++..+. ++.+|++|+|++|.|..+| ..+.++++|++|+|++|+++.+|. .+..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 467777777777777664555 7777777777777777666 357777777777777777777665 3667777777777
Q ss_pred ccccC
Q 044931 662 NWIHS 666 (889)
Q Consensus 662 ~~~~~ 666 (889)
++|..
T Consensus 120 ~~N~i 124 (361)
T 2xot_A 120 YNNHI 124 (361)
T ss_dssp CSSCC
T ss_pred CCCcc
Confidence 77653
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=123.46 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=77.0
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
..++.|.+++|.+.... ....| . .+++|++|+|++|.++.+++..|.++.+|++|+|++|.++.+|.
T Consensus 32 ~~~~~L~L~~N~l~~~~-----------~~~~~-~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLE-----------ATGIF-K-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp TTCSEEECCSSCCCEEC-----------CCCCG-G-GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCCEEEcCCCcCCccC-----------chhhh-c-cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 34566777766654210 12233 3 66677777777777766665566777777777777777766654
Q ss_pred -ccCCCCCCcEEeecCCCcccC-chhhhhcccccccccccccCCCC-CCCcccccccccc
Q 044931 626 -SVGILPRLETLDVKHTKLRFL-PDSIWKAKKLQHLYLNWIHSPID-GLSLSSLNNLQTL 682 (889)
Q Consensus 626 -~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~-~~~i~~l~~L~~L 682 (889)
.+.++++|++|+|++|+++.+ |..+..+++|++|++++|..... |..+..+++|+.|
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 366677777777777766665 34566677777777776664443 4555666666655
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=4.9e-12 Score=123.25 Aligned_cols=109 Identities=19% Similarity=0.116 Sum_probs=63.9
Q ss_pred cccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCc
Q 044931 542 WSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFID 621 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~ 621 (889)
+..+++|+.|++.+|.+.. ++.+. . ..++|++|++++|.++.+ + .++.+++|++|+|++|.++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-------------i~~~~-~-~~~~L~~L~Ls~N~l~~~-~-~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-------------IENLG-A-TLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-------------CCCGG-G-GTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCC
T ss_pred cCCcCCceEEEeeCCCCch-------------hHHhh-h-cCCCCCEEECCCCCCCcc-c-ccccCCCCCEEECCCCccc
Confidence 4455566666666665532 12222 1 223666666666666655 3 4666666666666666666
Q ss_pred cccccc-CCCCCCcEEeecCCCcccCch--hhhhcccccccccccccCC
Q 044931 622 SLPKSV-GILPRLETLDVKHTKLRFLPD--SIWKAKKLQHLYLNWIHSP 667 (889)
Q Consensus 622 ~lp~~i-~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~ 667 (889)
.+|+.+ +.+++|++|++++|.+..+|. .+..+++|++|++++|...
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 666444 666666666666666666665 5666666666666665443
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.2e-11 Score=119.48 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=48.7
Q ss_pred CceeeeEEEecCcccC--CCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCccc-Cchhhhhcccccc
Q 044931 582 GFVLLTVLDLEGVYKL--KLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRF-LPDSIWKAKKLQH 658 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~--~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~ 658 (889)
..+.|+.|++++|.+. .+|. .+..+++|++|+|++|.++.+ ..++.+++|++|++++|.++. +|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3455666666666655 4544 455666666666666666555 455666666666666666555 4544555666666
Q ss_pred cccccccC
Q 044931 659 LYLNWIHS 666 (889)
Q Consensus 659 L~l~~~~~ 666 (889)
|++++|..
T Consensus 100 L~Ls~N~l 107 (168)
T 2ell_A 100 LNLSGNKL 107 (168)
T ss_dssp EECBSSSC
T ss_pred EeccCCcc
Confidence 66665543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=2.7e-12 Score=153.47 Aligned_cols=121 Identities=17% Similarity=0.017 Sum_probs=84.7
Q ss_pred EEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCC
Q 044931 589 LDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPI 668 (889)
Q Consensus 589 L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 668 (889)
+++++|.+. ++++.+..+.+|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..+++|++|++|+|++|....
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 344445554 3444899999999999999999999999999999999999999999999999999999999999998778
Q ss_pred CCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccC
Q 044931 669 DGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCD 712 (889)
Q Consensus 669 ~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 712 (889)
+|..++.|++|+.|. +..+.. ...+..++.|++|+.|+++++
T Consensus 285 lp~~~~~l~~L~~L~-L~~N~l-~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 285 LPAELGSCFQLKYFY-FFDNMV-TTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCSSGGGGTTCSEEE-CCSSCC-CCCCSSTTSCTTCCCEECTTS
T ss_pred cChhhcCCCCCCEEE-CCCCCC-CccChhhhcCCCccEEeCCCC
Confidence 888888888877773 322222 223344555555555555544
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=2.6e-11 Score=114.47 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=105.0
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcc-c
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDS-L 623 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~-l 623 (889)
.++|+.|++++|.+... .++..+ . .+++|++|++++|.+..+ . .++.+++|++|+|++|.+.. +
T Consensus 16 ~~~l~~L~l~~n~l~~~-----------~~~~~~-~-~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~ 80 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG-----------KLEGLT-D-EFEELEFLSTINVGLTSI-A-NLPKLNKLKKLELSDNRVSGGL 80 (149)
T ss_dssp GGGCSEEECTTCBCBTT-----------BCCSCC-T-TCTTCCEEECTTSCCCCC-T-TCCCCTTCCEEECCSSCCCSCT
T ss_pred CccCeEEEccCCcCChh-----------HHHHHH-h-hcCCCcEEECcCCCCCCc-h-hhhcCCCCCEEECCCCcccchH
Confidence 47899999999987510 233444 5 899999999999999988 4 79999999999999999997 8
Q ss_pred ccccCCCCCCcEEeecCCCcccCc--hhhhhcccccccccccccCCCCCC----Cccccccccccc
Q 044931 624 PKSVGILPRLETLDVKHTKLRFLP--DSIWKAKKLQHLYLNWIHSPIDGL----SLSSLNNLQTLW 683 (889)
Q Consensus 624 p~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~----~i~~l~~L~~L~ 683 (889)
|..++.+++|++|++++|.++.+| ..+..+++|++|++++|.....|. .++.+++|+.|.
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 888888999999999999999876 789999999999999998766665 577788888773
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=4.7e-11 Score=116.21 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=107.0
Q ss_pred CccceeeeeeeeCCCCCcCCCcccccc-ccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCC
Q 044931 520 PQFAVRRLATYLGVSTNFIPSEWSWSW-HLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLK 598 (889)
Q Consensus 520 ~~~~~r~lsl~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 598 (889)
...+.+.+.+..+.... .+.+..+. +|+.|++++|.+.. ++ .+ . .+++|++|++++|.++.
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-------------~~-~l-~-~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-------------LD-GF-P-LLRRLKTLLVNNNRICR 78 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-------------EC-CC-C-CCSSCCEEECCSSCCCE
T ss_pred CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-------------cc-cc-c-cCCCCCEEECCCCcccc
Confidence 34567888888555554 24455555 99999999998852 22 33 4 89999999999999999
Q ss_pred CChHHhccccCCcEEeCCCCCCccccc--ccCCCCCCcEEeecCCCcccCchh----hhhccccccccccccc
Q 044931 599 LSDDVIGKLLNLRYLGLRSTFIDSLPK--SVGILPRLETLDVKHTKLRFLPDS----IWKAKKLQHLYLNWIH 665 (889)
Q Consensus 599 l~~~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 665 (889)
+|+..++.+++|++|+|++|.++.+|. .++.+++|++|++++|.+..+|.. +..+++|+.|+++++.
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 887456999999999999999999997 899999999999999999999985 8999999999998864
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=6.6e-11 Score=129.70 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=46.8
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccC-chhhhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFL-PDSIWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L 659 (889)
.+++|+.|+|++|.+..+++..|.++++|++|+|++|.++.+|. .+.++++|++|+|++|++..+ |..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 44555555555555555544345555555555555555554443 345555555555555555544 2345555555555
Q ss_pred ccccccCCCCCC
Q 044931 660 YLNWIHSPIDGL 671 (889)
Q Consensus 660 ~l~~~~~~~~~~ 671 (889)
++++|....+|.
T Consensus 142 ~L~~N~l~~l~~ 153 (361)
T 2xot_A 142 YLSQNQISRFPV 153 (361)
T ss_dssp ECCSSCCCSCCG
T ss_pred ECCCCcCCeeCH
Confidence 555555444443
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=8.5e-11 Score=127.10 Aligned_cols=101 Identities=13% Similarity=0.002 Sum_probs=76.8
Q ss_pred ccccccccccc-cccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCC-eEEeecCccCCCcceeCCCCCCccc
Q 044931 742 VTTLQELYLRG-SIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLN-ILRLYRGAYLGEETTCSSGGFPQLR 819 (889)
Q Consensus 742 ~~~L~~L~l~~-~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~ 819 (889)
+++|+.+++.+ .+..+|...|... .+|+.|+|.++ +.......+.+|++|+ .+.+.. ... ......+.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCC
Confidence 67888888887 4778887444444 99999999997 6656677889999999 999984 332 22345678899999
Q ss_pred EEEccccCCCcceec-ccCcccccceeec
Q 044931 820 VLKLWNLFSLEEWTV-EKGAMPRLRELEI 847 (889)
Q Consensus 820 ~L~l~~~~~l~~~~~-~~~~lp~L~~L~l 847 (889)
.|++.++. +..++. .+..+++|+.|+.
T Consensus 301 ~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 99998776 666654 6778888988864
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.2e-10 Score=134.86 Aligned_cols=94 Identities=24% Similarity=0.220 Sum_probs=47.4
Q ss_pred eeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhccccccccccccc
Q 044931 586 LTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 586 Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 665 (889)
|++|+|++|.++.+|. |++|++|++|+|++|.++.+|..+++|++|++|+|++|.++.+| .++++++|++|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 4455555555554442 45555555555555555555555555555555555555555554 45555555555555544
Q ss_pred CCCC--CCCcccccccccc
Q 044931 666 SPID--GLSLSSLNNLQTL 682 (889)
Q Consensus 666 ~~~~--~~~i~~l~~L~~L 682 (889)
.... |..++.+++|+.|
T Consensus 520 l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEE
T ss_pred CCCCCCcHHHhcCCCCCEE
Confidence 3333 4444444444444
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.10 E-value=5.9e-09 Score=115.27 Aligned_cols=283 Identities=13% Similarity=0.089 Sum_probs=165.6
Q ss_pred ccccchhhhHHHHHHHHhcc-CCCCceEEEEECCCCCcHHHHHHHHhcccccccc--------CCceEEEEeCCcc-cHH
Q 044931 172 INLVGLEEQINNLVSLLIRE-HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH--------FAKRAWVRVRSEA-KVR 241 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~v~~~~-~~~ 241 (889)
..++||+++++++.++|... .....+.+.|+|++|+||||||+.+++. .... ....+|++..... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 78999999999999888652 1114578999999999999999999983 3222 2346777776666 778
Q ss_pred HHHHHHHHHhhhhhcccCCCCHHH----HHHhHh-------hhhHHhH-----HHH-HhhhccCCCCCCCcEEEEEcCCC
Q 044931 242 DVLIDILQQINDEMLVEASSPEEE----LASSLA-------TLTQQVW-----QVL-RNSLYYSSSKSRDGKIILTTSDE 304 (889)
Q Consensus 242 ~~~~~i~~~l~~~~~~~~~~~~~~----l~~~l~-------v~~~~~~-----~~l-~~~l~~~~~~~~gs~iivTTR~~ 304 (889)
.++..++.++.....+........ +...+. +++.+.. ..+ ...+... ..+..||+||+..
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---DANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---SSCEEEEEECSST
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---CcceEEEEEECCC
Confidence 888888888743322111111122 222221 2222211 222 3333333 2577899999875
Q ss_pred C---CcccccccC-CCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhC---CCch-HHHHHhh
Q 044931 305 N---NIPLEAKAA-GSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCG---GLPI-RIVLLGG 376 (889)
Q Consensus 305 ~---~v~~~~~~~-~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPL-ai~~~g~ 376 (889)
. .+....... ...+++++++.++..++|...+. ..... ...+ .+....|++.++ |.|. |+.++-.
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~-~~~~~--~~~~----~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE-YGLIK--GTYD----DEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH-HTSCT--TSCC----SHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH-hhccc--CCcC----HHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3 022211111 14899999999999999998853 11000 1122 234556777777 8876 4444333
Q ss_pred hh--h-cccCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhccCCCCcccchhhhhhhhcccCCcCC
Q 044931 377 LL--S-ATKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMWFFPRAFEIPVRRLICLWCTEPFVAP 453 (889)
Q Consensus 377 ~L--~-~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp~~~~i~~~~Li~~w~a~g~i~~ 453 (889)
.. . ....-+.+.+..+++... ...+..++..|+.+.+..+..++....+-.+. +.....--..| ...
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~--------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~ 317 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYE--------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP 317 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHH--------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh--------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC
Confidence 22 1 111113677777766432 24567778899988887777676511101111 11111111223 123
Q ss_pred CchhHHHHHHHHHHHhcceeeec
Q 044931 454 IDTDLAETYFEELVIRNLIHVTK 476 (889)
Q Consensus 454 ~~e~~~~~~l~~L~~rsll~~~~ 476 (889)
........+++.|..+++++...
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEe
Confidence 34566789999999999998754
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=6.6e-11 Score=127.95 Aligned_cols=288 Identities=14% Similarity=0.004 Sum_probs=162.5
Q ss_pred cccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccc
Q 044931 544 WSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSL 623 (889)
Q Consensus 544 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~l 623 (889)
...+++.|.+.++-.. . .+..+. . .+++|++|||++|.+..... .-+.+..++++.+..+ .+
T Consensus 23 ~~~~l~~L~l~g~i~~----~--------~~~~l~-~-~l~~L~~LdLs~n~i~~~~~-~~~~~~~~~~~~~~~~---~I 84 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA----E--------DFRHLR-D-EFPSLKVLDISNAEIKMYSG-KAGTYPNGKFYIYMAN---FV 84 (329)
T ss_dssp HHHHCSEEEEEEEECH----H--------HHHHHH-H-SCTTCCEEEEEEEEECCEEE-SSSSSGGGCCEEECTT---EE
T ss_pred hhCceeEEEEeccccH----H--------HHHHHH-H-hhccCeEEecCcceeEEecC-cccccccccccccccc---cc
Confidence 5788999999986331 1 233333 2 37889999999999871111 0112222344444433 22
Q ss_pred c-cccCC--------CCCCcEEeecCCCcccCch-hhhhcccccccccccccCC-CCCCCcccccccccccccccc---c
Q 044931 624 P-KSVGI--------LPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSP-IDGLSLSSLNNLQTLWGLSIE---S 689 (889)
Q Consensus 624 p-~~i~~--------L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~---~ 689 (889)
| ..|.+ +.+|+.|+|.+ +++.++. .+..+++|+.|++..+... ..+..+....++..+..-... .
T Consensus 85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 85 PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc
Confidence 2 23444 66666666666 5555554 3555666666666555432 222223333333322100000 0
Q ss_pred CCCccccCCCCCCCCC-eeecccCchhhHHHHHhhhcccccccceecccCCccccccccccccccccccccccccccCCC
Q 044931 690 YTPFRQSDSTKWPRLI-KLGVKCDSQMAIEFIINLLVCARTDGLVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPN 768 (889)
Q Consensus 690 ~~~~~~~~l~~l~~L~-~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~ 768 (889)
........+..+.+|+ .+.+..... +...+... ...+.++..+.+.|.+.......+...|++
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~~--l~~~~~~~--------------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~ 227 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMGK--LEDEIMKA--------------GLQPRDINFLTIEGKLDNADFKLIRDYMPN 227 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTCC--HHHHHHHT--------------TCCGGGCSEEEEEECCCHHHHHHHHHHCTT
T ss_pred cccccccccccccccceeEEecCCCc--HHHHHhhc--------------ccCccccceEEEeeeecHHHHHHHHHhcCC
Confidence 0000011122333344 333322211 11111100 012345566666664422111022233599
Q ss_pred ccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCccc-EEEccccCCCccee-cccCcccccceee
Q 044931 769 LKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLR-VLKLWNLFSLEEWT-VEKGAMPRLRELE 846 (889)
Q Consensus 769 L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~lp~L~~L~ 846 (889)
|+.|+|++|.+.......+.+|++|+.|+|.+| . .......+.++++|+ .|.+.+ .+..++ ..+..|++|+.|+
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEE
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEE
Confidence 999999999988777778999999999999865 3 223345678899999 999987 467774 5688899999999
Q ss_pred cccccCCCCCCCc-chhhhhcccceEEe
Q 044931 847 IRSCNNLKPPQPQ-GLQNLTNTLKEFVL 873 (889)
Q Consensus 847 l~~C~~L~~~lp~-~l~~l~~~L~~L~l 873 (889)
+.. ++++ .++. .+.+++ +|+.|+.
T Consensus 304 l~~-n~i~-~I~~~aF~~~~-~L~~ly~ 328 (329)
T 3sb4_A 304 ATG-DKIT-TLGDELFGNGV-PSKLIYK 328 (329)
T ss_dssp ECS-SCCC-EECTTTTCTTC-CCCEEEC
T ss_pred eCC-CccC-ccchhhhcCCc-chhhhcc
Confidence 988 8888 7766 678898 9998863
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=3.1e-10 Score=112.07 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=49.0
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCchh-hhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 659 (889)
.+++|+.|+|++|.++.+++..|.++.+|++|+|++|.++.+|. .+.++++|++|+|++|.++.+|.. +..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence 55666666666666665555456666666666666666665543 455666666666666666655543 4556666666
Q ss_pred ccccc
Q 044931 660 YLNWI 664 (889)
Q Consensus 660 ~l~~~ 664 (889)
++++|
T Consensus 132 ~L~~N 136 (193)
T 2wfh_A 132 AIGAN 136 (193)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 66554
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=3.1e-10 Score=112.07 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=60.5
Q ss_pred eeeEEEecCcccCCCChH-HhccccCCcEEeCCCCCCccc-ccccCCCCCCcEEeecCCCcccCchh-hhhccccccccc
Q 044931 585 LLTVLDLEGVYKLKLSDD-VIGKLLNLRYLGLRSTFIDSL-PKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYL 661 (889)
Q Consensus 585 ~Lr~L~L~~~~i~~l~~~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 661 (889)
.|++|++++|.+..+++. .|+.+++|++|+|++|.++.+ |..+.++++|++|+|++|+++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 677788888877777652 377778888888888877766 56777788888888888877776553 667777777777
Q ss_pred ccccC
Q 044931 662 NWIHS 666 (889)
Q Consensus 662 ~~~~~ 666 (889)
++|..
T Consensus 110 ~~N~l 114 (192)
T 1w8a_A 110 YDNQI 114 (192)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 77653
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=7.1e-10 Score=109.46 Aligned_cols=105 Identities=18% Similarity=0.110 Sum_probs=79.1
Q ss_pred ceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-ccc
Q 044931 549 RSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSV 627 (889)
Q Consensus 549 r~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i 627 (889)
+++++.++.+... +.. -.+.|+.|+|++|.++.+|. .|.++.+|++|+|++|.|+.+| ..|
T Consensus 13 ~~l~~~~~~l~~i------------p~~-----~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKGLKVL------------PKG-----IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp TEEECTTSCCSSC------------CSC-----CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred CEEEcCCCCCCcC------------CCC-----CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHc
Confidence 6677777766431 212 22468888888888888886 8888888888888888888776 458
Q ss_pred CCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCCCCC
Q 044931 628 GILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPIDGL 671 (889)
Q Consensus 628 ~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~ 671 (889)
.++++|++|+|++|.++.+|. .+..+++|++|++++|....+|.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 888888888888888888765 57788888888888876554443
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=3.5e-10 Score=111.65 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=91.6
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhh-hcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMIT-AKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.++++|.+.+|.+.. ..+ ..+ . .+++|++|+|++|.++.+++..|+++.+|++|+|++|.++.+|
T Consensus 29 ~~l~~L~l~~n~i~~------------~~~~~~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 94 (192)
T 1w8a_A 29 LHTTELLLNDNELGR------------ISSDGLF-G-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94 (192)
T ss_dssp TTCSEEECCSCCCCS------------BCCSCSG-G-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC
T ss_pred CCCCEEECCCCcCCc------------cCCcccc-c-cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC
Confidence 389999999998853 222 234 5 8999999999999999886658999999999999999999876
Q ss_pred c-ccCCCCCCcEEeecCCCcccC-chhhhhcccccccccccccC
Q 044931 625 K-SVGILPRLETLDVKHTKLRFL-PDSIWKAKKLQHLYLNWIHS 666 (889)
Q Consensus 625 ~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 666 (889)
. .+.++++|++|+|++|+++.+ |..+..+++|++|++++|..
T Consensus 95 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5 489999999999999999976 66788999999999998763
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=6.4e-10 Score=108.23 Aligned_cols=108 Identities=23% Similarity=0.258 Sum_probs=78.4
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.++|++|.+++|.+.. ..+..+ . .+++|++|++++|.++.+++..++.+.+|++|+|++|.++.+|
T Consensus 27 ~~~l~~L~l~~n~l~~------------~~~~~~-~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 27 PSSATRLELESNKLQS------------LPHGVF-D-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp CTTCSEEECCSSCCCC------------CCTTTT-T-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCcEEEeCCCcccE------------eCHHHh-c-CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence 3577888888877653 233344 4 7778888888888887777655677888888888888887776
Q ss_pred cc-cCCCCCCcEEeecCCCcccCchh-hhhcccccccccccccC
Q 044931 625 KS-VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIHS 666 (889)
Q Consensus 625 ~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 666 (889)
.. +.++++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 54 57788888888888887777765 36678888888877643
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.03 E-value=2.7e-08 Score=110.03 Aligned_cols=285 Identities=13% Similarity=0.071 Sum_probs=165.7
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCCceEEEEECCCCCcHHHHHHHHhcccccccc------CCceEEEEeCCcccHHHH
Q 044931 172 INLVGLEEQINNLVSLLIRE--HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH------FAKRAWVRVRSEAKVRDV 243 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~v~~~~~~~~~ 243 (889)
+.++||+++++++..++... .. ..+.+.|+|++|+||||||+.+++. .... --..+|++.....+...+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~-~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGE-KPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSC-CCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC-CCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 78999999999999999653 22 5678999999999999999999983 3221 124677887777788888
Q ss_pred HHHHHHHhhhhhcccCCCCHHHHHH----hHh---------hhhHH-------hHHHHHhhhccCCCC--CCCcEEEEEc
Q 044931 244 LIDILQQINDEMLVEASSPEEELAS----SLA---------TLTQQ-------VWQVLRNSLYYSSSK--SRDGKIILTT 301 (889)
Q Consensus 244 ~~~i~~~l~~~~~~~~~~~~~~l~~----~l~---------v~~~~-------~~~~l~~~l~~~~~~--~~gs~iivTT 301 (889)
+..++.+++.... .......++.. .+. +++.+ ..+.+...+...... ..+..+|.||
T Consensus 96 ~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 96 ASAIAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 8999888855322 12222333222 221 22111 112222222111000 1255788888
Q ss_pred CCCC---CcccccccCC--CeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhC---CCch-HHH
Q 044931 302 SDEN---NIPLEAKAAG--STLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCG---GLPI-RIV 372 (889)
Q Consensus 302 R~~~---~v~~~~~~~~--~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPL-ai~ 372 (889)
+... .+........ ..+.+++++.++..+++...+. ..... ...+ .+....|++.++ |.|- |+.
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~-~~~~~--~~~~----~~~~~~l~~~~~~~~G~~r~~~~ 247 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE-EAFNP--GVLD----PDVVPLCAALAAREHGDARRALD 247 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH-HHBCT--TTBC----SSHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH-hhccC--CCCC----HHHHHHHHHHHHHhccCHHHHHH
Confidence 7763 1211111111 4789999999999999998753 10000 1122 234567777777 9993 333
Q ss_pred HHhhhhh-----cccCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhc-cCCCCcccchhhhhhhh-
Q 044931 373 LLGGLLS-----ATKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMW-FFPRAFEIPVRRLICLW- 445 (889)
Q Consensus 373 ~~g~~L~-----~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s-~Fp~~~~i~~~~Li~~w- 445 (889)
++..... ....-+.+.+..++.... ...+.-++..||.+.+..+..++ ++-....+....+.+..
T Consensus 248 ~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~--------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 248 LLRVAGEIAERRREERVRREHVYSARAEIE--------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHHH--------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHh--------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 3332221 111112566666665432 23456678889988887776666 44322244444333322
Q ss_pred ---cccCCcCCCchhHHHHHHHHHHHhcceeeec
Q 044931 446 ---CTEPFVAPIDTDLAETYFEELVIRNLIHVTK 476 (889)
Q Consensus 446 ---~a~g~i~~~~e~~~~~~l~~L~~rsll~~~~ 476 (889)
-..| ...........+++.|...++++...
T Consensus 320 ~~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTLG-LEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcC-CCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 1123 22334567889999999999998754
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=3.5e-10 Score=109.64 Aligned_cols=93 Identities=25% Similarity=0.278 Sum_probs=74.1
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccc-cCCCCCCcEEeecCCCcccCchh-hhhccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKS-VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYL 661 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 661 (889)
+.|++|+|++|.+..+++..|+++++|++|+|++|.++.+|.. +.++++|++|+|++|+|+.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5788888888888888665788888888888888888888865 57888888888888888888875 778888888888
Q ss_pred ccccCCCCCCCcccc
Q 044931 662 NWIHSPIDGLSLSSL 676 (889)
Q Consensus 662 ~~~~~~~~~~~i~~l 676 (889)
++|.....+..+..+
T Consensus 113 ~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 113 YNNPWDCECRDIMYL 127 (174)
T ss_dssp CSSCBCTTBGGGHHH
T ss_pred CCCCcccccccHHHH
Confidence 887765555444433
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=3.8e-08 Score=108.87 Aligned_cols=308 Identities=13% Similarity=0.096 Sum_probs=174.6
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCCceEEEEECCCCCcHHHHHHHHhccccccccC-CceEEEEeCCcccHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIRE---HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF-AKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i 247 (889)
+.++||+++++.+.+++... ..+..+.+.|+|.+|+||||||+.+++. ..... ..++|++.+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999999763 2112348999999999999999999983 33321 246677777777788888888
Q ss_pred HHHhhhhhcccCCCCHHHHHHhHh-------------hhh-----HHhHHHHHhhhccCCCCC---CCcEEEEEcCCCCC
Q 044931 248 LQQINDEMLVEASSPEEELASSLA-------------TLT-----QQVWQVLRNSLYYSSSKS---RDGKIILTTSDENN 306 (889)
Q Consensus 248 ~~~l~~~~~~~~~~~~~~l~~~l~-------------v~~-----~~~~~~l~~~l~~~~~~~---~gs~iivTTR~~~~ 306 (889)
+..++.... ........+.+.+. +++ .+....+...+.... . .+..||+||+...
T Consensus 95 ~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~--~~~~~~~~iI~~~~~~~- 170 (389)
T 1fnn_A 95 ARSLNIPFP-RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD--KLGAFRIALVIVGHNDA- 170 (389)
T ss_dssp HHHTTCCCC-SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH--HHSSCCEEEEEEESSTH-
T ss_pred HHHhCccCC-CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC--CCCcCCEEEEEEECCch-
Confidence 888754321 12223333332221 221 233444444442210 1 3667888888763
Q ss_pred ccccccc------CCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHh---------CCCchHH
Q 044931 307 IPLEAKA------AGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKC---------GGLPIRI 371 (889)
Q Consensus 307 v~~~~~~------~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c---------~GlPLai 371 (889)
....+.. ....+.+.+++.++..+++...+. ..... ... ..+....|++.+ +|.|-.+
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~-~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK-AGLAE--GSY----SEDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH-HHBCT--TSS----CHHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH-hhcCC--CCC----CHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 2222111 114799999999999999988764 21100 111 245667888888 7887544
Q ss_pred HHHhhhhh------cccCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhccCC---CCcccchhhhh
Q 044931 372 VLLGGLLS------ATKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMWFFP---RAFEIPVRRLI 442 (889)
Q Consensus 372 ~~~g~~L~------~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp---~~~~i~~~~Li 442 (889)
..+..... ....-+.+....+...... ..+.-.+..||.+.+.++..++.+. .+..+....+.
T Consensus 244 ~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 315 (389)
T 1fnn_A 244 IDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF--------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAE 315 (389)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC--------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh--------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHH
Confidence 43332211 1111113333333332211 1223345678888887777777554 22245555555
Q ss_pred hhhcc----cCCcCCCchhHHHHHHHHHHHhcceeeecc----ccCCCcceeec----ChhHHHhhhhhhh
Q 044931 443 CLWCT----EPFVAPIDTDLAETYFEELVIRNLIHVTKW----RLDGTPKMCRL----PTVLYDVFSPEAA 501 (889)
Q Consensus 443 ~~w~a----~g~i~~~~e~~~~~~l~~L~~rsll~~~~~----~~~~~~~~~~m----Hdlv~~~~~~~~~ 501 (889)
..+.. .|.. .........++++|..++++..... ...|....+++ |+++..+...+..
T Consensus 316 ~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 316 ESYKIVCEEYGER-PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HHHHHHHHHTTCC-CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 54432 2321 2244667889999999999987653 11233333333 4555555544443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=1.4e-11 Score=122.60 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccCchhhhhcccccccccccccCCCCCCCccccc
Q 044931 598 KLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHLYLNWIHSPIDGLSLSSLN 677 (889)
Q Consensus 598 ~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~ 677 (889)
.+|. .++.+++|++|+|++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++|....+| .++.++
T Consensus 39 ~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 3444 6666777777777777666666 666677777777777766667666666677777777766654444 455555
Q ss_pred ccccccccccccCCCc-cccCCCCCCCCCeeecccCch
Q 044931 678 NLQTLWGLSIESYTPF-RQSDSTKWPRLIKLGVKCDSQ 714 (889)
Q Consensus 678 ~L~~L~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 714 (889)
+|+.|. +..+..... .+..+..+++|+.|++.++..
T Consensus 116 ~L~~L~-l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 116 NLRVLY-MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEE-ESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCEEE-CCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 555552 222221111 123467788888888888764
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=1.7e-09 Score=105.14 Aligned_cols=90 Identities=29% Similarity=0.247 Sum_probs=73.4
Q ss_pred CceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccc-cCCCCCCcEEeecCCCcccCchh-hhhccccccc
Q 044931 582 GFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKS-VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 659 (889)
-.+.|+.|++++|.+..+++..++.+.+|++|+|++|.++.+|.. ++++++|++|++++|+++.+|.. +..+++|++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 346788999999998888875678899999999999999888754 68899999999999998888765 5788999999
Q ss_pred ccccccCCCCCC
Q 044931 660 YLNWIHSPIDGL 671 (889)
Q Consensus 660 ~l~~~~~~~~~~ 671 (889)
++++|....+|.
T Consensus 106 ~l~~N~l~~~~~ 117 (177)
T 2o6r_A 106 ALDTNQLKSVPD 117 (177)
T ss_dssp ECCSSCCSCCCT
T ss_pred ECcCCcceEeCH
Confidence 998876554443
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.97 E-value=3e-09 Score=109.36 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=113.1
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc-------------------CCceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-------------------FAKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 232 (889)
.+++||+..++.+..++.... ..+.+.|+|.+|+||||||+.+++....... +...+.+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC--CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 569999999999999998754 3458999999999999999999874221111 1111222
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccc
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAK 312 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~ 312 (889)
..... .....+..+++.+.......... --+.+.+.-++.+.++.+...+... ..+.++|+||+....+.....
T Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--vlviDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 101 DAASR-TKVEDTRDLLDNVQYAPARGRFK--VYLIDEVHMLSRHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp ETTCG-GGHHHHHHHHHSCCCSCSSSSSE--EEEEETGGGSCHHHHHHHHHHHHSC---CTTEEEEEEESCGGGSCHHHH
T ss_pred cCccc-ccHHHHHHHHHHhhhchhcCCce--EEEEECcccccHHHHHHHHHHHhcC---CCceEEEEEeCChHhCCHHHH
Confidence 22221 12223333433332111000000 0000000012334566666666555 567888998876542332222
Q ss_pred cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 044931 313 AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLL 378 (889)
Q Consensus 313 ~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 378 (889)
.....+++++++.++..+++...+. .... .. ..+....|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~-~~~~----~~----~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILN-EEHI----AH----EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHH-HTTC----CB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHH-hcCC----CC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2226799999999999999998875 3221 11 23557789999999999988776544
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=9.4e-10 Score=106.17 Aligned_cols=86 Identities=24% Similarity=0.276 Sum_probs=67.1
Q ss_pred eeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccccc-cCCCCCCcEEeecCCCcccCchh-hhhccccccccc
Q 044931 584 VLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPKS-VGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYL 661 (889)
Q Consensus 584 ~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 661 (889)
+.|++|+|++|.++.+++..|+++.+|++|+|++|.++.+|.. +.++++|++|+|++|+++.+|.. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 5678888888888887665788888888888888888877754 57888888888888888888764 777888888888
Q ss_pred ccccCCCC
Q 044931 662 NWIHSPID 669 (889)
Q Consensus 662 ~~~~~~~~ 669 (889)
++|.....
T Consensus 110 ~~N~~~c~ 117 (170)
T 3g39_A 110 LNNPWDCA 117 (170)
T ss_dssp CSSCBCTT
T ss_pred CCCCCCCC
Confidence 87764433
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.94 E-value=1.1e-11 Score=123.39 Aligned_cols=107 Identities=20% Similarity=0.131 Sum_probs=64.2
Q ss_pred ccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCC
Q 044931 541 EWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFI 620 (889)
Q Consensus 541 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i 620 (889)
.+..+++|++|++++|.+.. ++ .+ . .+++|+.|++++|.+..+|. .+..+++|++|+|++|.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-------------l~-~~-~-~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-------------IS-SL-S-GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQI 105 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-------------CC-CH-H-HHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEEC
T ss_pred HHhcCCCCCEEECCCCCCcc-------------cc-cc-c-cCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcC
Confidence 45556666666666665542 12 12 2 55666666666666666655 555666666666666666
Q ss_pred cccccccCCCCCCcEEeecCCCcccCch--hhhhccccccccccccc
Q 044931 621 DSLPKSVGILPRLETLDVKHTKLRFLPD--SIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 621 ~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~ 665 (889)
+.+| .++++++|++|++++|+++.+|. .+..+++|++|++++|.
T Consensus 106 ~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 106 ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 6665 46666666666666666665543 45666666666666654
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.94 E-value=4.4e-08 Score=108.16 Aligned_cols=282 Identities=16% Similarity=0.100 Sum_probs=158.9
Q ss_pred ccccchhhhHHHHHHHHhcc--CCCCceEEEEECCCCCcHHHHHHHHhccccccccC---CceEEEEeCCcccHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIRE--HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF---AKRAWVRVRSEAKVRDVLID 246 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~~~~~ 246 (889)
..|+||+++++.+.+++... .. ..+.+.|+|++|+||||||+.+++ .....+ ...+|+......+...++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~-~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE-KPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC-CCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 78999999999999999853 22 567899999999999999999998 444443 24667776666666777777
Q ss_pred HHHHhhhhhcccCCCCHHHHHH----hHh---------hhhHH---------hHHHHHhhhccCCCCCCCcEEEEEcCCC
Q 044931 247 ILQQINDEMLVEASSPEEELAS----SLA---------TLTQQ---------VWQVLRNSLYYSSSKSRDGKIILTTSDE 304 (889)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~l~~----~l~---------v~~~~---------~~~~l~~~l~~~~~~~~gs~iivTTR~~ 304 (889)
++.+++.... .......++.. .+. +++.+ .+..+...+... ...+..+|+||+..
T Consensus 97 i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 97 LLESLDVKVP-FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--NKSKISFIGITNDV 173 (386)
T ss_dssp HTTTTSCCCC-SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC--CC--EEEEEEESCG
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc--CCCeEEEEEEECCC
Confidence 7766643221 11122222222 111 22221 222233323211 02356678888765
Q ss_pred CCcccccc----cC--CCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhC---CCchHH-HHH
Q 044931 305 NNIPLEAK----AA--GSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCG---GLPIRI-VLL 374 (889)
Q Consensus 305 ~~v~~~~~----~~--~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPLai-~~~ 374 (889)
. ....+. .. ...+.+++++.++..+++...+. ..... ... ..+....|++.++ |.|..+ .++
T Consensus 174 ~-~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~-~~~~~--~~~----~~~~~~~l~~~~~~~~G~~r~~~~ll 245 (386)
T 2qby_A 174 K-FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ-MAFKP--GVL----PDNVIKLCAALAAREHGDARRALDLL 245 (386)
T ss_dssp G-GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH-HHBCS--SCS----CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred C-hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH-hhccC--CCC----CHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4 222111 11 14799999999999999998653 11100 112 2345566777776 998844 333
Q ss_pred hhhhh-----cccCCChhhHHHHHHhcccCCCchhhHHHHHHhhccccccchhhhhhhccCCC-C-cccchhhhhhhh--
Q 044931 375 GGLLS-----ATKGRNFQKWSSVIERADVDKSDGWVSGLLALSYQELPSKLKPFFFYMWFFPR-A-FEIPVRRLICLW-- 445 (889)
Q Consensus 375 g~~L~-----~~~~~~~~~w~~~l~~l~~~~~~~~i~~~l~~Sy~~L~~~~k~cf~~~s~Fp~-~-~~i~~~~Li~~w-- 445 (889)
..... ....-+.+.+..++.... ...+.-++..||...+..+..++...+ + ..+....+...+
T Consensus 246 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~--------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~ 317 (386)
T 2qby_A 246 RVSGEIAERMKDTKVKEEYVYMAKEEIE--------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLN 317 (386)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHH--------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHh--------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHH
Confidence 32221 111112555555554322 235666778888887777776663221 1 123333332211
Q ss_pred --cccCCcCCCchhHHHHHHHHHHHhcceeeec
Q 044931 446 --CTEPFVAPIDTDLAETYFEELVIRNLIHVTK 476 (889)
Q Consensus 446 --~a~g~i~~~~e~~~~~~l~~L~~rsll~~~~ 476 (889)
-..| +..........+++.|...++++...
T Consensus 318 ~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 318 ICKKLG-VEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHT-CCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHhcC-CCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1112 11223456778999999999998753
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=5.4e-09 Score=101.14 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=82.9
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCccccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK 625 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~ 625 (889)
++|+.|++++|.+.. ..+..| . .+++|++|+|++|.++.+|+..|.++++|++|+|++|.|+.+|.
T Consensus 33 ~~L~~L~Ls~N~l~~------------~~~~~~-~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~ 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK------------LEPGVF-D-HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98 (174)
T ss_dssp TTCSEEECCSSCCCC------------CCTTTT-T-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEEeCCCCccc------------cCHHHh-c-CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH
Confidence 899999999999864 334455 5 89999999999999999998667999999999999999999987
Q ss_pred c-cCCCCCCcEEeecCCCcccCchhhhhcc
Q 044931 626 S-VGILPRLETLDVKHTKLRFLPDSIWKAK 654 (889)
Q Consensus 626 ~-i~~L~~L~~L~L~~~~l~~lp~~i~~L~ 654 (889)
. +.++++|++|+|++|.+...|..+..+.
T Consensus 99 ~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp TTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred HHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 5 9999999999999999998876665544
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=5.6e-08 Score=107.32 Aligned_cols=245 Identities=12% Similarity=0.076 Sum_probs=149.3
Q ss_pred hhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCchhhh
Q 044931 573 MITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPDSIW 651 (889)
Q Consensus 573 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~ 651 (889)
+....| . ++ .|+.+.+.++ ++.+....|.++ +|+.+.|.. .++.++ ..|.++.+|+.+++.+|+++.+|....
T Consensus 127 I~~~aF-~-~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 127 IPKDAF-R-NS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp ECTTTT-T-TC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred ehHhhc-c-cC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence 334455 4 54 6888888765 666666667774 688888875 566665 567888888888888888888887655
Q ss_pred hcccccccccccccCCCCCCCcccccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhccccccc
Q 044931 652 KAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDG 731 (889)
Q Consensus 652 ~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 731 (889)
...+|+.+.+..+-.......+..+.+|+++ .+... ++.+
T Consensus 201 ~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l-------------------------~l~~~--------------l~~I- 240 (401)
T 4fdw_A 201 VYAGIEEVLLPVTLKEIGSQAFLKTSQLKTI-------------------------EIPEN--------------VSTI- 240 (401)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCCE-------------------------ECCTT--------------CCEE-
T ss_pred eecccCEEEeCCchheehhhHhhCCCCCCEE-------------------------ecCCC--------------ccCc-
Confidence 5677777777643222222233334444433 33211 0000
Q ss_pred ceecccCCccccccccccccccccccccccccccCCCccEEEeeccCCC-----CCCchhhhcCCCCCeEEeecCccCCC
Q 044931 732 LVEIEYGEARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLV-----YDPMPLLEELAHLNILRLYRGAYLGE 806 (889)
Q Consensus 732 l~~~~l~~~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~-----~~~~~~l~~L~~L~~L~L~~~~~~~~ 806 (889)
.-..-...+|+.+.+...+..++...+.. |++|+.+.+.++.+. ......+..|++|+.+.|. +....
T Consensus 241 ----~~~aF~~~~L~~i~lp~~i~~I~~~aF~~-c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~- 313 (401)
T 4fdw_A 241 ----GQEAFRESGITTVKLPNGVTNIASRAFYY-CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI- 313 (401)
T ss_dssp ----CTTTTTTCCCSEEEEETTCCEECTTTTTT-CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-
T ss_pred ----cccccccCCccEEEeCCCccEEChhHhhC-CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-
Confidence 00000013455666655555555523433 488888888877653 2344567788899999887 33321
Q ss_pred cceeCCCCCCcccEEEccccCCCccee-cccCcccccceeecccccCCCCCCCc-chhhhhcccceEEecc
Q 044931 807 ETTCSSGGFPQLRVLKLWNLFSLEEWT-VEKGAMPRLRELEIRSCNNLKPPQPQ-GLQNLTNTLKEFVLTN 875 (889)
Q Consensus 807 ~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~lp~L~~L~l~~C~~L~~~lp~-~l~~l~~~L~~L~l~~ 875 (889)
.....+.++++|+.+.|..+ +..+. ..+..+ +|+.|.+.+ +.+. .++. .+..++.+++.|.+..
T Consensus 314 I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~-n~~~-~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEG-TTPP-QVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECC-SSCC-BCCCSSCCCSCTTCCEEEECG
T ss_pred EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcC-CCCc-ccccccccCCCCCccEEEeCH
Confidence 22345677888999998654 56653 356677 899999988 6666 4443 4555654677887765
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=8e-08 Score=106.09 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=83.2
Q ss_pred CCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCC
Q 044931 539 PSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRST 618 (889)
Q Consensus 539 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~ 618 (889)
...+.++ +|+++.+..+-.. +-...| . ++ .|+.+.+.+ .+..+....|.+|.+|+.++|..|
T Consensus 129 ~~aF~~~-~L~~i~l~~~i~~-------------I~~~aF-~-~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEGLKS-------------IGDMAF-F-NS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp TTTTTTC-CCSEEECCTTCCE-------------ECTTTT-T-TC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS
T ss_pred HhhcccC-CccEEEeCCCccE-------------ECHHhc-C-CC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC
Confidence 4456665 7999998766221 344556 4 54 699999986 677777778999999999999999
Q ss_pred CCcccccccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccc
Q 044931 619 FIDSLPKSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWI 664 (889)
Q Consensus 619 ~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 664 (889)
.++.+|...-...+|+.+.+.. +++.++. .+.++++|+.+.+..+
T Consensus 191 ~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 191 KITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT
T ss_pred cceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC
Confidence 9999997655579999999975 4777765 5778999999999763
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=1.4e-08 Score=97.90 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=79.9
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
.++|+.|++++|.+.. ..+..| . .+++|++|+|++|.++.+++..|.++++|++|+|++|.++.+|
T Consensus 29 ~~~l~~L~L~~N~i~~------------~~~~~~-~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 29 PTTTQVLYLYDNQITK------------LEPGVF-D-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp CTTCSEEECCSSCCCC------------CCTTTT-T-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCcEEEcCCCcCCc------------cChhhh-c-CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence 4889999999999865 334455 5 8999999999999999999867899999999999999999998
Q ss_pred c-ccCCCCCCcEEeecCCCcccCchhhh
Q 044931 625 K-SVGILPRLETLDVKHTKLRFLPDSIW 651 (889)
Q Consensus 625 ~-~i~~L~~L~~L~L~~~~l~~lp~~i~ 651 (889)
. .+.++++|++|+|++|.+...+..+.
T Consensus 95 ~~~~~~l~~L~~L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNNPWDCACSDIL 122 (170)
T ss_dssp TTTTTTCTTCCEEECCSSCBCTTBGGGH
T ss_pred HHHhcCCCCCCEEEeCCCCCCCCchhHH
Confidence 6 48999999999999998876654433
No 156
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.76 E-value=7.7e-08 Score=97.13 Aligned_cols=187 Identities=15% Similarity=0.133 Sum_probs=107.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-cCC-ceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-HFA-KRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.+++|+++.++.+.+++.... .+.+.|+|.+|+|||+||+.+++. ... .+. ..+.+..+.......+... +.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK-IK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC---CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH-HH
T ss_pred HHHcCcHHHHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH-HH
Confidence 569999999999999998753 334999999999999999999883 322 222 2334444444343333222 22
Q ss_pred HhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHH
Q 044931 250 QINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESW 329 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~ 329 (889)
.+............--+.+.+.-...+.++.+...+... ..+.++|+||+....+...+......+++.+++.++..
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY---SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK 167 (226)
T ss_dssp HHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc---CCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence 221110000000000000000011123344555555544 45778999988654232222222257899999999999
Q ss_pred HHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 044931 330 KLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGG 376 (889)
Q Consensus 330 ~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~ 376 (889)
+++.+.+. ..+. .. ..+....|++.++|.|..+..+..
T Consensus 168 ~~l~~~~~-~~~~----~~----~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 168 KRLLEICE-KEGV----KI----TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHHHH-HHTC----CB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-HcCC----CC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99998774 2221 11 134567888999999986554443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=5.8e-08 Score=105.58 Aligned_cols=84 Identities=24% Similarity=0.163 Sum_probs=44.1
Q ss_pred CceeeeEEEecC-cccCCCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcccCchhhhhccccccc
Q 044931 582 GFVLLTVLDLEG-VYKLKLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLRFLPDSIWKAKKLQHL 659 (889)
Q Consensus 582 ~l~~Lr~L~L~~-~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 659 (889)
.+++|+.|+|++ |.+..+++..|++|.+|++|+|++|.|+.+|+ .|.+|++|+.|+|++|+|+.+|..+....+|+.|
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEE
Confidence 555555555554 55555554455555555555555555554432 3455555555555555555555443333235555
Q ss_pred cccccc
Q 044931 660 YLNWIH 665 (889)
Q Consensus 660 ~l~~~~ 665 (889)
++.+|.
T Consensus 109 ~l~~N~ 114 (347)
T 2ifg_A 109 VLSGNP 114 (347)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 555543
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=1.6e-07 Score=100.81 Aligned_cols=183 Identities=18% Similarity=0.194 Sum_probs=109.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-cCC-ceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-HFA-KRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.+++|++..++.+.+++.... .+.+.|+|.+|+||||+|+.+++. ... .+. ..++++.+...... .++++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 94 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN---MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGID-VVRNQIK 94 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC---CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHH-HHHTHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChH-HHHHHHH
Confidence 569999999999999988653 234899999999999999999983 322 122 24455444433332 2333444
Q ss_pred HhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCC
Q 044931 250 QINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRL 323 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L 323 (889)
.+.....+-... ..++- + .....++.+...+... ..++++|+||+....+..........+++.++
T Consensus 95 ~~~~~~~~~~~~-----~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 95 HFAQKKLHLPPG-----KHKIVILDEADSMTAGAQQALRRTMELY---SNSTRFAFACNQSNKIIEPLQSQCAILRYSKL 166 (323)
T ss_dssp HHHHBCCCCCTT-----CCEEEEEESGGGSCHHHHHTTHHHHHHT---TTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred HHHhccccCCCC-----CceEEEEECcccCCHHHHHHHHHHHhcc---CCCceEEEEeCChhhchhHHHhhceEEeecCC
Confidence 333110000000 00010 1 1123455555555554 45778888887654233333222368999999
Q ss_pred ChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch-HHHHHhhh
Q 044931 324 NEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI-RIVLLGGL 377 (889)
Q Consensus 324 ~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~g~~ 377 (889)
+.++..+++...+. ..+. .. ..+....|++.++|.|. |+..+...
T Consensus 167 ~~~~~~~~l~~~~~-~~~~----~~----~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 167 SDEDVLKRLLQIIK-LEDV----KY----TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CHHHHHHHHHHHHH-HHTC----CB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999998764 2211 11 13556789999999995 45555443
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.46 E-value=2.8e-07 Score=99.04 Aligned_cols=188 Identities=14% Similarity=0.051 Sum_probs=100.9
Q ss_pred ccccchhhhHHHHHHHHhccC--CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREH--NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.++||++..++.+..++.... ......|.|+|.+|+|||++|+.+++ .... ..+++..+......++...+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHHHHHHTT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHHHHHHHH
Confidence 579999999999988886421 11346789999999999999999988 3322 2345544433333333322211
Q ss_pred Hhhhhhc---cc-CCCCHHHHHHhH-hhhhHHhHHHHHhhhccCCC-------CCCCcEEEEEcCCCCCcccccccCC-C
Q 044931 250 QINDEML---VE-ASSPEEELASSL-ATLTQQVWQVLRNSLYYSSS-------KSRDGKIILTTSDENNIPLEAKAAG-S 316 (889)
Q Consensus 250 ~l~~~~~---~~-~~~~~~~l~~~l-~v~~~~~~~~l~~~l~~~~~-------~~~gs~iivTTR~~~~v~~~~~~~~-~ 316 (889)
.+..... ++ ...... .+..+ ++.+..... .+..... ..++.++|.||.....+...+.... .
T Consensus 87 ~~~~~~~l~lDEi~~l~~~-~~~~L~~~l~~~~~~----~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~ 161 (324)
T 1hqc_A 87 SLEEGDILFIDEIHRLSRQ-AEEHLYPAMEDFVMD----IVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI 161 (324)
T ss_dssp TCCTTCEEEETTTTSCCHH-HHHHHHHHHHHSEEE----ECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSC
T ss_pred hccCCCEEEEECCcccccc-hHHHHHHHHHhhhhH----HhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccE
Confidence 0111100 11 122211 11111 111110000 0000000 0123566766664431322222221 5
Q ss_pred eeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 044931 317 TLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGLL 378 (889)
Q Consensus 317 ~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~L 378 (889)
.+.+.+++.+|..+++.+.+. .... .. ..+....|++.++|.|-.+..+...+
T Consensus 162 ~i~l~~~~~~e~~~~l~~~~~-~~~~----~~----~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 162 VEHLEYYTPEELAQGVMRDAR-LLGV----RI----TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHH-TTTC----CC----CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHH-hcCC----CC----CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 789999999999999998875 3221 12 23567789999999998877665443
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=7.9e-08 Score=104.15 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=96.7
Q ss_pred ccccccccccccccc-cccccccccccCCCccEEEeeccCCCCCCchhhh--cCCCCCeEEeec--CccCCCc-c-----
Q 044931 740 ARVTTLQELYLRGSI-HSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLE--ELAHLNILRLYR--GAYLGEE-T----- 808 (889)
Q Consensus 740 ~~~~~L~~L~l~~~~-~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~L~~L~~L~L~~--~~~~~~~-~----- 808 (889)
.++|+|++|.|+|+. ..++. + .. ++|+.|+|..|.+.......+. .+|+|+.|+|+. +...+.. +
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred hcCCCCcEEEEeCCCCceecc--c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 356788888887753 33442 2 23 8999999999988766666665 799999999963 2222211 1
Q ss_pred eeCCCCCCcccEEEccccCCCccee---cccCcccccceeecccccCCCC----CCCcchhhhhcccceEEeccCc--hh
Q 044931 809 TCSSGGFPQLRVLKLWNLFSLEEWT---VEKGAMPRLRELEIRSCNNLKP----PQPQGLQNLTNTLKEFVLTNMP--ST 879 (889)
Q Consensus 809 ~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~lp~L~~L~l~~C~~L~~----~lp~~l~~l~~~L~~L~l~~cp--~~ 879 (889)
......||+|+.|.|.+|......+ .....+|+|++|+|+. |.+.+ .++.++.+++ +|+.|+|++|+ +.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIK-HLKFINMKYNYLSDE 322 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHT-TCSEEECCSBBCCHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCC-cceEEECCCCcCCHH
Confidence 1122469999999999987543221 1224689999999986 77873 2566678899 99999999876 33
Q ss_pred HHHHHhh
Q 044931 880 FGEAVES 886 (889)
Q Consensus 880 ~~~~~~~ 886 (889)
..+.+.+
T Consensus 323 ~~~~l~~ 329 (362)
T 2ra8_A 323 MKKELQK 329 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.44 E-value=5.8e-07 Score=99.46 Aligned_cols=301 Identities=10% Similarity=-0.018 Sum_probs=168.1
Q ss_pred CCccccccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCC
Q 044931 539 PSEWSWSWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRST 618 (889)
Q Consensus 539 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~ 618 (889)
...|.+|.+|+++.+..+-.. +-...| . +|++|+.+++.++ ++.+....|.++..|+.+.+..+
T Consensus 64 ~~AF~~c~~L~~i~lp~~i~~-------------I~~~aF-~-~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPSTVRE-------------IGEFAF-E-NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp TTTTTTCTTEEEEECCTTCCE-------------ECTTTT-T-TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred HHHhhCCCCceEEEeCCCccC-------------cchhHh-h-CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 345777888888887644211 334455 5 7788888888654 55555556777777776665432
Q ss_pred ---------------------CCccc-ccccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCCCCCCccc
Q 044931 619 ---------------------FIDSL-PKSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPIDGLSLSS 675 (889)
Q Consensus 619 ---------------------~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~i~~ 675 (889)
.+..+ ...+.++.+|+.+.+..+ +..++. .+.++.+|+.+.+..+-.......+..
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~ 206 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAE 206 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTT
T ss_pred eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhcc
Confidence 01111 134667778888888654 344543 466678888887765432223334455
Q ss_pred ccccccccccccccCCCccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceec--cc--CC-ccccccccccc
Q 044931 676 LNNLQTLWGLSIESYTPFRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEI--EY--GE-ARVTTLQELYL 750 (889)
Q Consensus 676 l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~--~l--~~-~~~~~L~~L~l 750 (889)
...|+.+.. ...............+|+.+.+...-...-...+..+..|+.+.+... .+ .. ..++.++.+..
T Consensus 207 ~~~L~~i~~---~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 207 CILLENMEF---PNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp CTTCCBCCC---CTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred ccccceeec---CCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 555554421 111111111122334566555543211111112334455555555432 11 11 34555555544
Q ss_pred cccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCc
Q 044931 751 RGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLE 830 (889)
Q Consensus 751 ~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 830 (889)
... .++...+. .+.+|+.+.+..+ +.......+.++.+|+.+.|..+ .. ..-...+.++++|+.+.+..+ +.
T Consensus 284 ~~~--~i~~~~F~-~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~--l~ 355 (394)
T 4fs7_A 284 GSV--IVPEKTFY-GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS--LR 355 (394)
T ss_dssp CSS--EECTTTTT-TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT--CC
T ss_pred Cce--eecccccc-ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc--cc
Confidence 332 23331222 3488999988765 44344566788999999998632 21 122345677889999999754 56
Q ss_pred cee-cccCcccccceeecccccCCCCCCCcchhhhhcccceE
Q 044931 831 EWT-VEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEF 871 (889)
Q Consensus 831 ~~~-~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L 871 (889)
.+. ..+..|++|+.+.+.. .++ .+...+.+++ +|+.+
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~--~~~-~~~~~F~~c~-~L~~I 393 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPK--RLE-QYRYDFEDTT-KFKWI 393 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEG--GGG-GGGGGBCTTC-EEEEE
T ss_pred EehHHHhhCCCCCCEEEECC--CCE-EhhheecCCC-CCcEE
Confidence 664 3577889999999864 455 5555677777 77765
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=3.7e-08 Score=107.70 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=58.6
Q ss_pred cccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCC-hHHhccccCCcEEeCCCCCCcccc
Q 044931 546 WHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLS-DDVIGKLLNLRYLGLRSTFIDSLP 624 (889)
Q Consensus 546 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~-~~~i~~l~~Lr~L~L~~~~i~~lp 624 (889)
++|++|++++|.+....+. .+...+.. ..+.|+.|+|++|.+.... ......+.+|++|+|++|.++...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~--------~l~~~L~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT--------VVAAVLGS-GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH--------HHHHHHSS-CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred hhCCEEEecCCCCCHHHHH--------HHHHHHhh-CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence 4566777776665322111 12222202 3357777777777765211 112234566777777777665321
Q ss_pred -----ccc-CCCCCCcEEeecCCCccc-----Cchhhhhcccccccccccc
Q 044931 625 -----KSV-GILPRLETLDVKHTKLRF-----LPDSIWKAKKLQHLYLNWI 664 (889)
Q Consensus 625 -----~~i-~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 664 (889)
..+ ...++|++|+|++|.++. ++..+..+++|++|++++|
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 112 235667777777776653 3444455666666666664
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=4.3e-07 Score=98.63 Aligned_cols=95 Identities=16% Similarity=0.019 Sum_probs=80.2
Q ss_pred CCCccccccccceeEeec-ccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCC
Q 044931 538 IPSEWSWSWHLRSYVAFD-TRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLR 616 (889)
Q Consensus 538 ~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~ 616 (889)
.|. +..+++|+.|++++ |.+.. ..+..| . .+++|+.|+|++|.++.+++..|++|.+|++|+|+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~------------~~~~~~-~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQH------------LELRDL-R-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCE------------ECGGGS-C-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCC------------cChhHh-c-cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 344 88889999999996 88753 444556 5 99999999999999999888789999999999999
Q ss_pred CCCCcccccccCCCCCCcEEeecCCCcccCc
Q 044931 617 STFIDSLPKSVGILPRLETLDVKHTKLRFLP 647 (889)
Q Consensus 617 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp 647 (889)
+|.+..+|..+.....|+.|+|.+|.+....
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999999976655555999999999887543
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=9.4e-07 Score=95.01 Aligned_cols=188 Identities=17% Similarity=0.125 Sum_probs=106.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccccc-CC-ceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-FA-KRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.+++|+++.++.+..++..+. ...+.|+|.+|+||||+|+.+++. .... +. ..+.+..+....... +...+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS---MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINV-IREKVK 98 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC---CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHT-THHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC---CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHH-HHHHHH
Confidence 459999999999999988763 345899999999999999999983 3221 11 233444443322221 122222
Q ss_pred HhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhhHH
Q 044931 250 QINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEESW 329 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~ 329 (889)
.+............--+.+...-...+.++.+...+... ..++++|+||.....+..........+++.+++.++..
T Consensus 99 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~---~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 99 EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 175 (327)
T ss_dssp HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHH
T ss_pred HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc---CCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHH
Confidence 211100000000000000000011123455555555554 45788888887654222222222257899999999999
Q ss_pred HHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 044931 330 KLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLGGL 377 (889)
Q Consensus 330 ~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g~~ 377 (889)
+++...+. ..+. .-..+....|++.++|.|..+..+...
T Consensus 176 ~~l~~~~~-~~~~--------~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 176 KRLRYIAE-NEGL--------ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HHHHHHHH-TTTC--------EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH-hcCC--------CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99998875 3221 112356678889999999866554433
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=6.3e-08 Score=105.82 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=79.2
Q ss_pred ccccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCCCChHHh-----ccccCCcEEeCCCCC
Q 044931 545 SWHLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLKLSDDVI-----GKLLNLRYLGLRSTF 619 (889)
Q Consensus 545 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i-----~~l~~Lr~L~L~~~~ 619 (889)
+++|++|++++|.+... .+..++ . .+++|+.|+|++|.+.......+ ....+|++|+|++|.
T Consensus 100 ~~~L~~L~Ls~n~l~~~-----------~~~~l~-~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 100 RHALDEVNLASCQLDPA-----------GLRTLL-P-VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp SSCEEEEECTTCCCCHH-----------HHHHTH-H-HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCCceEEEecCCCCCHH-----------HHHHHH-H-HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 36899999999977421 233344 4 66789999999998864333233 245789999999998
Q ss_pred Ccc-----cccccCCCCCCcEEeecCCCccc-----Cchhhhhccccccccccccc
Q 044931 620 IDS-----LPKSVGILPRLETLDVKHTKLRF-----LPDSIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 620 i~~-----lp~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 665 (889)
++. ++..+..+++|++|+|++|.+.. ++..+...++|++|++++|.
T Consensus 167 l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 167 LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 864 55666788899999999998773 35566777889999998875
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=4.6e-07 Score=86.01 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=67.8
Q ss_pred CCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCC----CCcccEEEccccCCCcce-ecccCcccc
Q 044931 767 PNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGG----FPQLRVLKLWNLFSLEEW-TVEKGAMPR 841 (889)
Q Consensus 767 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~-~~~~~~lp~ 841 (889)
.+|+.|++++|.++...+..+..|++|+.|+|++|....+.-...+.. .++|++|+|++|+.++.- -..+..+|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999988888889999999999999886544332222333 357999999999876542 223567899
Q ss_pred cceeecccccCCC
Q 044931 842 LRELEIRSCNNLK 854 (889)
Q Consensus 842 L~~L~l~~C~~L~ 854 (889)
|+.|+|++|++++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999999888
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.12 E-value=6.2e-06 Score=90.35 Aligned_cols=181 Identities=16% Similarity=0.171 Sum_probs=103.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccC-------------------CceEEE
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF-------------------AKRAWV 232 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-------------------~~~~wv 232 (889)
.+++|++..++.+...+.... ....+.|+|.+|+||||+|+.+.+...-...+ ...+.+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC--CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred hhccCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 459999999999999997653 34578999999999999999998732111111 011222
Q ss_pred EeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCC
Q 044931 233 RVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENN 306 (889)
Q Consensus 233 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~ 306 (889)
..+..... +.+++++..+...... .. .++- ++ +...++.+...+... ..+..+|++|.....
T Consensus 94 ~~~~~~~~-~~~~~l~~~~~~~~~~-~~-------~~vliiDe~~~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 94 DAASRTKV-EDTRDLLDNVQYAPAR-GR-------FKVYLIDEVHMLSRHSFNALLKTLEEP---PEHVKFLLATTDPQK 161 (373)
T ss_dssp ETTCSCCS-SCHHHHHHHTTSCCSS-SS-------SEEEEEECGGGSCHHHHHHHHHHHHSC---CSSEEEEEEESCGGG
T ss_pred cccccCCH-HHHHHHHHHHhhcccc-CC-------eEEEEEECcchhcHHHHHHHHHHHhcC---CCceEEEEEeCChHh
Confidence 22111000 0112222222110000 00 0000 11 223455566666554 456677777765432
Q ss_pred cccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 307 IPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 307 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
+...+......+++.+++.++..+++.+.+. ..+. .. ..+....|++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~-~~~~----~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILN-EEHI----AH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-HHTC----CB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 3332322236799999999999999987764 2211 11 13456789999999998776654
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.10 E-value=1.5e-05 Score=87.93 Aligned_cols=280 Identities=12% Similarity=0.047 Sum_probs=149.8
Q ss_pred hcccCCCceeeeEEEecCcccCCCChHHhccccCCcEEeCCCCCCcccc-cccCCCCCCcEEeecCCCcccCc-------
Q 044931 576 AKSKRGGFVLLTVLDLEGVYKLKLSDDVIGKLLNLRYLGLRSTFIDSLP-KSVGILPRLETLDVKHTKLRFLP------- 647 (889)
Q Consensus 576 ~~~~~~~l~~Lr~L~L~~~~i~~l~~~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp------- 647 (889)
..| . ++.+|+.+.+.. .++.+....|.+|.+|+.++|..+ ++.++ ..+.++.+|+.+.+..+ +..+.
T Consensus 65 ~AF-~-~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAF-Q-GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTT-T-TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHh-h-CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 445 5 889999999975 477777778999999999999764 56554 45777777777666433 22221
Q ss_pred ----------------hhhhhcccccccccccccCCCCCCCcccccccccccccccccC-CCccccCCCCCCCCCeeecc
Q 044931 648 ----------------DSIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESY-TPFRQSDSTKWPRLIKLGVK 710 (889)
Q Consensus 648 ----------------~~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~-~~~~~~~l~~l~~L~~L~l~ 710 (889)
..+.++.+|+.+.+...........+..+.+|+.+. +... .......+.++..|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~---l~~~~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIK---LPRNLKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCC---CCTTCCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEE---cCCCceEeCchhhccccccceeecC
Confidence 123344555555554322222222233344444331 1110 01111223344444444433
Q ss_pred cCchhhHHHHHhhhcccccccceec--ccC--C-ccccccccccccccccccccccccccCCCccEEEeeccCCCCCCch
Q 044931 711 CDSQMAIEFIINLLVCARTDGLVEI--EYG--E-ARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMP 785 (889)
Q Consensus 711 ~~~~~~l~~~l~~l~~L~~L~l~~~--~l~--~-~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~ 785 (889)
.... .+........+|+.+.+... .++ . ..+..|+.+.+......+....+. .+..++.+.+....+ .-.
T Consensus 217 ~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~-~~~~l~~~~~~~~~i---~~~ 291 (394)
T 4fs7_A 217 NSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFY-NCSGLKKVIYGSVIV---PEK 291 (394)
T ss_dssp TTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTT-TCTTCCEEEECSSEE---CTT
T ss_pred CCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccc-cccccceeccCceee---ccc
Confidence 2211 00000111223333333221 111 1 344555555555444444331222 236666665554432 223
Q ss_pred hhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCccee-cccCcccccceeecccccCCCCCCCc-chhh
Q 044931 786 LLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWT-VEKGAMPRLRELEIRSCNNLKPPQPQ-GLQN 863 (889)
Q Consensus 786 ~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~lp~L~~L~l~~C~~L~~~lp~-~l~~ 863 (889)
.+..+.+|+.+.+..+ ... .-...+.++++|+.+.|..+ ++.+. ..+..|.+|+.+.+.. +++ .++. .+..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~--~l~-~I~~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL--SLR-KIGANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT--TCC-EECTTTBTT
T ss_pred cccccccccccccccc-cce-echhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc--ccc-EehHHHhhC
Confidence 4567888888888633 211 12234667789999998643 56664 4577789999999965 366 5554 5778
Q ss_pred hhcccceEEeccC
Q 044931 864 LTNTLKEFVLTNM 876 (889)
Q Consensus 864 l~~~L~~L~l~~c 876 (889)
++ +|+.+.+.+.
T Consensus 365 C~-~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CI-NLKKVELPKR 376 (394)
T ss_dssp CT-TCCEEEEEGG
T ss_pred CC-CCCEEEECCC
Confidence 88 9999998653
No 169
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=9.5e-06 Score=87.73 Aligned_cols=79 Identities=23% Similarity=0.169 Sum_probs=52.4
Q ss_pred CceeeeEEEecCcccC----------CCChHHhccccCCcEEeCCCCCCcccccccCCCCCCcEEeecCCCcccC-chhh
Q 044931 582 GFVLLTVLDLEGVYKL----------KLSDDVIGKLLNLRYLGLRSTFIDSLPKSVGILPRLETLDVKHTKLRFL-PDSI 650 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~----------~l~~~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~i 650 (889)
.+++|+.|.+.+.... .+.+ .+..+++|+.|+|+++.-..+|. +. +++|++|+|..|.+..- ...+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 5667777777554321 2333 67788899999998873234554 43 88999999988876521 1233
Q ss_pred h--hccccccccccc
Q 044931 651 W--KAKKLQHLYLNW 663 (889)
Q Consensus 651 ~--~L~~L~~L~l~~ 663 (889)
. .+++|++|+|+.
T Consensus 214 ~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHSBCTTCCEEEEEC
T ss_pred HHccCCCCcEEEEec
Confidence 3 688899998853
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=1.8e-05 Score=87.34 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=68.1
Q ss_pred ccccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCccc
Q 044931 740 ARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLR 819 (889)
Q Consensus 740 ~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 819 (889)
..+.+|+.+.+......+....+. .+++|+.+.+... +.......+.+|.+|+.+.|..+ .. ..-...+.++.+|+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~-~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFM-NCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCC
T ss_pred eecccccEEecccccceecCcccc-cccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCC
Confidence 456677777776555445442222 3477888877543 33344456777888888888632 21 11123466777888
Q ss_pred EEEccccCCCccee-cccCcccccceeecccccCCCCCCCcchhhhhcccceEEec
Q 044931 820 VLKLWNLFSLEEWT-VEKGAMPRLRELEIRSCNNLKPPQPQGLQNLTNTLKEFVLT 874 (889)
Q Consensus 820 ~L~l~~~~~l~~~~-~~~~~lp~L~~L~l~~C~~L~~~lp~~l~~l~~~L~~L~l~ 874 (889)
.+.|..+ +..+. ..+..|++|+.+++.+ +... + ..+.... +|+.+.+.
T Consensus 338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~-~~~~--~-~~~~~~~-~L~~i~i~ 386 (394)
T 4gt6_A 338 RIAIPSS--VTKIPESAFSNCTALNNIEYSG-SRSQ--W-NAISTDS-GLQNLPVA 386 (394)
T ss_dssp EEEECTT--CCBCCGGGGTTCTTCCEEEESS-CHHH--H-HTCBCCC-CC------
T ss_pred EEEECcc--cCEEhHhHhhCCCCCCEEEECC-ceee--h-hhhhccC-CCCEEEeC
Confidence 8888643 45553 3567788888888766 3221 1 2233444 56665553
No 171
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=4.2e-06 Score=81.48 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=83.0
Q ss_pred cccccccceeEeecc-cccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCC-----CChHHhccccCCcEEeC
Q 044931 542 WSWSWHLRSYVAFDT-RIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLK-----LSDDVIGKLLNLRYLGL 615 (889)
Q Consensus 542 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----l~~~~i~~l~~Lr~L~L 615 (889)
+...+.|++|++++| .+...... .+...+ . ..+.|++|+|++|.+.. +.. .+...++|++|+|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~--------~l~~~L-~-~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L 100 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLK--------ACAEAL-K-TNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNV 100 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHH--------HHHHHH-T-TCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEEC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHH--------HHHHHH-H-hCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEEC
Confidence 456788999999988 66421111 223333 4 67889999999999763 222 5666789999999
Q ss_pred CCCCCcc-----cccccCCCCCCcEEee--cCCCccc-----Cchhhhhccccccccccccc
Q 044931 616 RSTFIDS-----LPKSVGILPRLETLDV--KHTKLRF-----LPDSIWKAKKLQHLYLNWIH 665 (889)
Q Consensus 616 ~~~~i~~-----lp~~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 665 (889)
++|.|.. +...+...++|++|+| ++|.+.. +...+...++|++|++++|.
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 9998874 5677888889999999 7788773 45566677889999998764
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.92 E-value=7.2e-05 Score=80.55 Aligned_cols=178 Identities=19% Similarity=0.114 Sum_probs=96.2
Q ss_pred cccccchhhhHHHHHHHHhccC--CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHH
Q 044931 171 EINLVGLEEQINNLVSLLIREH--NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 248 (889)
-.+++|++..++.+..++.... ......|.|+|.+|+|||+||+.+++ +.... .+.++.+..... .-+...+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~-~~~~~~~ 101 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKS-GDLAAIL 101 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSH-HHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccch-hHHHHHH
Confidence 3679999999999999987641 11456789999999999999999987 33222 223333222222 2222222
Q ss_pred HHhhhhhc---cc-CCCCHHHHHHhHhhhhHHhHHHHHhhhccCC---------------CCCCCcEEEEEcCCCCCccc
Q 044931 249 QQINDEML---VE-ASSPEEELASSLATLTQQVWQVLRNSLYYSS---------------SKSRDGKIILTTSDENNIPL 309 (889)
Q Consensus 249 ~~l~~~~~---~~-~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~---------------~~~~gs~iivTTR~~~~v~~ 309 (889)
........ ++ .....+ . ...+...+.... ...++..+|.+|.....+..
T Consensus 102 ~~~~~~~vl~lDEi~~l~~~-~-----------~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~ 169 (338)
T 3pfi_A 102 TNLSEGDILFIDEIHRLSPA-I-----------EEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSN 169 (338)
T ss_dssp HTCCTTCEEEEETGGGCCHH-H-----------HHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCH
T ss_pred HhccCCCEEEEechhhcCHH-H-----------HHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCH
Confidence 22111100 11 112111 1 111222221110 00113456666654331222
Q ss_pred ccccC-CCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 310 EAKAA-GSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 310 ~~~~~-~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.+... ...+.+.+++.++...++.+.+. .... .-..+....|++.+.|.|-.+..+.
T Consensus 170 ~L~~R~~~~i~l~~~~~~e~~~il~~~~~-~~~~--------~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 170 PLRDRFGMQFRLEFYKDSELALILQKAAL-KLNK--------TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHH-HTTC--------EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHhhcCEEeeCCCcCHHHHHHHHHHHHH-hcCC--------CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 12111 15799999999999999998775 2221 1224566778889999985554433
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.88 E-value=1.2e-05 Score=85.87 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=102.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccc-cccCC-ceEEEEeCCccc---HHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV-KRHFA-KRAWVRVRSEAK---VRDVLID 246 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~v~~~~~---~~~~~~~ 246 (889)
.+++|++..++.+.+++..+. ...+.|+|.+|+|||++|+.+++. . ...+. ..+.++.+.... ..+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN---IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC---CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCTTTSSHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC---CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccChHHHHHHHHH
Confidence 469999999999999987653 334899999999999999999883 2 11121 233344443222 2222222
Q ss_pred HHHHhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeec
Q 044931 247 ILQQINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHV 320 (889)
Q Consensus 247 i~~~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l 320 (889)
.......... . ..+- ++ ..+..+.+...+... ..+.++|+||.....+...+......+++
T Consensus 92 ~~~~~~~~~~---~-------~~vliiDe~~~l~~~~~~~L~~~le~~---~~~~~~i~~~~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 92 FARTAPIGGA---P-------FKIIFLDEADALTADAQAALRRTMEMY---SKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp HHHSCCSSSC---C-------CEEEEEETGGGSCHHHHHTTGGGTSSS---SSSEEEEEEESCGGGSCHHHHTTCEEEEC
T ss_pred HHhcCCCCCC---C-------ceEEEEeCCCcCCHHHHHHHHHHHHhc---CCCCeEEEEeCChhhcchHHHhhCeEEEe
Confidence 2211100000 0 0000 11 123344455555443 45678888876544233222222367999
Q ss_pred cCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 321 RRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 321 ~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.+++.++..+++...+. ..+. .. ..+....|++.++|.+..+..+.
T Consensus 159 ~~~~~~~~~~~l~~~~~-~~~~----~i----~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICE-KEGV----KI----TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CCCCHHHHHHHHHHHHH-TTCC----CB----CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999988875 3221 12 23456788889999987654443
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=7.5e-05 Score=80.92 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=103.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCC-ceEEEEeCCcccHHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA-KRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
.+++|+++.++.+..++.... ...+.|+|.+|+||||+|+.+.+.......+. ....+..+...... .+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN---LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREKVKN 112 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT---CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC---CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHHHHH
Confidence 569999999999999988763 23389999999999999999988421111122 23334333322222 22222222
Q ss_pred hhhhhcccCCCCHHHHH----HhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeec
Q 044931 251 INDEMLVEASSPEEELA----SSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHV 320 (889)
Q Consensus 251 l~~~~~~~~~~~~~~l~----~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l 320 (889)
+................ ..+- ++ .......+...+... ....++|++|.....+..........+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 113 FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY---SGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred HhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc---CCCceEEEEeCchhhCcchhhccCceEEe
Confidence 21110000000000000 0000 11 123344455555444 44667777775543132222222257899
Q ss_pred cCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 321 RRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 321 ~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
.+++.++....+...+. ..+. ..+ .+....|++.++|.|-.+..+
T Consensus 190 ~~~~~~~~~~~l~~~~~-~~~~----~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 190 KALDASNAIDRLRFISE-QENV----KCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCHHHHHHHHHHHHH-TTTC----CCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HhCC----CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998775 3221 122 456778999999999765444
No 175
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.81 E-value=0.00016 Score=79.68 Aligned_cols=299 Identities=11% Similarity=0.043 Sum_probs=165.1
Q ss_pred Ccccccc-ccceeEeecccccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcc---cCCCChHHhccccCCcEEeC
Q 044931 540 SEWSWSW-HLRSYVAFDTRIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVY---KLKLSDDVIGKLLNLRYLGL 615 (889)
Q Consensus 540 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~l~~~~i~~l~~Lr~L~L 615 (889)
..|.++. .|+++.+..+-.. +-...| . ++.+|+.+.+..+. ++.+....|.++.+|+.+.+
T Consensus 57 ~aF~~~~~~L~sI~iP~svt~-------------Ig~~AF-~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~ 121 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTVTE-------------IGSNAF-Y-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPI 121 (394)
T ss_dssp TTTTTCCSCCCEEEECTTCCE-------------ECTTTT-T-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGG
T ss_pred hhccCCCCcCEEEEECCCeeE-------------EhHHHh-h-CCccCceEeecCCCCCeeeEechhhchhcccceeecc
Confidence 3456664 5888888654221 334455 5 78888888887663 55666667778888887777
Q ss_pred CCCCCcccc-cccCCCCCCcEEeecCCCcccCch-hhhhcccccccccccccCCCCCCCcccccccccccccccccC-CC
Q 044931 616 RSTFIDSLP-KSVGILPRLETLDVKHTKLRFLPD-SIWKAKKLQHLYLNWIHSPIDGLSLSSLNNLQTLWGLSIESY-TP 692 (889)
Q Consensus 616 ~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~-~~ 692 (889)
..+ ++.++ ..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+...-.......+. -.+|+.+. +... ..
T Consensus 122 ~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~---ip~~~~~ 195 (394)
T 4gt6_A 122 LDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIH---IPAKVTR 195 (394)
T ss_dssp GTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEE---ECTTCCE
T ss_pred CCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccceeeEecccccc-ccceeEEE---ECCcccc
Confidence 554 45554 45677888888888543 444443 45667777777765432111111121 12333331 1110 01
Q ss_pred ccccCCCCCCCCCeeecccCchhhHHHHHhhhcccccccceecc-----cCC-ccccccccccccccccccccccccccC
Q 044931 693 FRQSDSTKWPRLIKLGVKCDSQMAIEFIINLLVCARTDGLVEIE-----YGE-ARVTTLQELYLRGSIHSFFDYGIEWNY 766 (889)
Q Consensus 693 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~-----l~~-~~~~~L~~L~l~~~~~~~p~~~~~~~~ 766 (889)
.....+..+.+|........... .....-...+. +.. .....+..+.+...+..+....+. .|
T Consensus 196 i~~~af~~c~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~-~c 264 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSESYP----------AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFD-SC 264 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSSSC----------BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTT-TC
T ss_pred cccchhhhccccceecccccccc----------cccceeecccccccccccccccccccceEEcCCcceEcccceee-ec
Confidence 11122334444443333221100 00000000000 000 111223333333333333331222 34
Q ss_pred CCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCccee-cccCccccccee
Q 044931 767 PNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWT-VEKGAMPRLREL 845 (889)
Q Consensus 767 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~lp~L~~L 845 (889)
.+|+.+.+..... ......+.++++|+.+.+. +... ......+.++++|+.+.|..+ ++.+. ..+..|.+|+.+
T Consensus 265 ~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 265 AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp SSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred ccccEEecccccc-eecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEE
Confidence 8899999876542 2445567889999999996 3222 122345677899999999753 66664 457789999999
Q ss_pred ecccccCCCCCCCc-chhhhhcccceEEeccCchh
Q 044931 846 EIRSCNNLKPPQPQ-GLQNLTNTLKEFVLTNMPST 879 (889)
Q Consensus 846 ~l~~C~~L~~~lp~-~l~~l~~~L~~L~l~~cp~~ 879 (889)
.|-. +++ .++. .+.+++ +|+.+.+.+....
T Consensus 340 ~ip~--sv~-~I~~~aF~~C~-~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 340 AIPS--SVT-KIPESAFSNCT-ALNNIEYSGSRSQ 370 (394)
T ss_dssp EECT--TCC-BCCGGGGTTCT-TCCEEEESSCHHH
T ss_pred EECc--ccC-EEhHhHhhCCC-CCCEEEECCceee
Confidence 9954 577 6765 578899 9999999986543
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=5.2e-06 Score=78.74 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=65.7
Q ss_pred CCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCccee-cccCc----ccccceeecccccCCCCCCCcchhhhh
Q 044931 791 AHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWT-VEKGA----MPRLRELEIRSCNNLKPPQPQGLQNLT 865 (889)
Q Consensus 791 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~----lp~L~~L~l~~C~~L~~~lp~~l~~l~ 865 (889)
.+|+.|+++++.++...+. .+.++++|+.|+|++|..++... ..+.. +++|+.|+|++|+++++.--..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4799999998886665553 45789999999999998776532 12333 468999999999999832223456788
Q ss_pred cccceEEeccCch
Q 044931 866 NTLKEFVLTNMPS 878 (889)
Q Consensus 866 ~~L~~L~l~~cp~ 878 (889)
+|+.|+|++||.
T Consensus 140 -~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 -NLKYLFLSDLPG 151 (176)
T ss_dssp -TCCEEEEESCTT
T ss_pred -CCCEEECCCCCC
Confidence 999999999984
No 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=2e-05 Score=80.64 Aligned_cols=80 Identities=23% Similarity=0.184 Sum_probs=62.3
Q ss_pred CceeeeEEEecCcccCCCCh--HHhccccCCcEEeCCCCCCcccccccCCCC--CCcEEeecCCCccc-Cc-------hh
Q 044931 582 GFVLLTVLDLEGVYKLKLSD--DVIGKLLNLRYLGLRSTFIDSLPKSVGILP--RLETLDVKHTKLRF-LP-------DS 649 (889)
Q Consensus 582 ~l~~Lr~L~L~~~~i~~l~~--~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~l~~-lp-------~~ 649 (889)
.++.|+.|+|++|.+..++. ..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.+.. +| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 77889999999999886542 26778999999999999998773 455555 89999999998763 44 23
Q ss_pred hhhcccccccccc
Q 044931 650 IWKAKKLQHLYLN 662 (889)
Q Consensus 650 i~~L~~L~~L~l~ 662 (889)
+..+++|+.|+-.
T Consensus 247 l~~~P~L~~LDg~ 259 (267)
T 3rw6_A 247 RERFPKLLRLDGH 259 (267)
T ss_dssp HHHCTTCCEESSC
T ss_pred HHHCcccCeECCc
Confidence 6678888888754
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.64 E-value=0.00034 Score=70.97 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=89.7
Q ss_pred ccccchh---hhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHH
Q 044931 172 INLVGLE---EQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 172 ~~~vGr~---~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 248 (889)
.+|+|.+ ..++.+..+.... ..+.+.|+|.+|+||||||+.+++ ........+.|+..+...+. +.+++
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~---~~~~~ 99 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI---STALL 99 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS---CGGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH---HHHHH
Confidence 4577633 4555666655543 347899999999999999999998 34333345667766543211 01111
Q ss_pred HHhhhhhccc-CCCCHHHHHHhHhhhhHHh-HHHHHhh---hccCCCCCCCcEEEEEcCCCCC-cc---cc----cccCC
Q 044931 249 QQINDEMLVE-ASSPEEELASSLATLTQQV-WQVLRNS---LYYSSSKSRDGKIILTTSDENN-IP---LE----AKAAG 315 (889)
Q Consensus 249 ~~l~~~~~~~-~~~~~~~l~~~l~v~~~~~-~~~l~~~---l~~~~~~~~gs~iivTTR~~~~-v~---~~----~~~~~ 315 (889)
+.+.....-- ++. +. +..... .+.+... .... ...++|+||+.... .. .. +...
T Consensus 100 ~~~~~~~vliiDe~--~~------~~~~~~~~~~l~~~l~~~~~~----~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~- 166 (242)
T 3bos_A 100 EGLEQFDLICIDDV--DA------VAGHPLWEEAIFDLYNRVAEQ----KRGSLIVSASASPMEAGFVLPDLVSRMHWG- 166 (242)
T ss_dssp TTGGGSSEEEEETG--GG------GTTCHHHHHHHHHHHHHHHHH----CSCEEEEEESSCTTTTTCCCHHHHHHHHHS-
T ss_pred HhccCCCEEEEecc--cc------ccCCHHHHHHHHHHHHHHHHc----CCCeEEEEcCCCHHHHHHhhhhhhhHhhcC-
Confidence 1111100000 000 00 000000 1112221 1111 12247777764320 11 11 1111
Q ss_pred CeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 316 STLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 316 ~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
..+++.+++.++..+++...+. .... .. ..+....|++.++|.+-.+..+-
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~-~~~~----~~----~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAA-MRGL----QL----PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHH-HTTC----CC----CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHH-HcCC----CC----CHHHHHHHHHHccCCHHHHHHHH
Confidence 5789999999999999998774 2221 12 24556788889999886665443
No 179
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00049 Score=72.20 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=93.9
Q ss_pred cccccccchhhhHHHHHHHHhccC-CCCceEEEEECCCCCcHHHHHHHHhccccccc---cCC--ceEEEEeCCcccHHH
Q 044931 169 EQEINLVGLEEQINNLVSLLIREH-NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR---HFA--KRAWVRVRSEAKVRD 242 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wv~v~~~~~~~~ 242 (889)
.+...+.||++++++|...|...- ......+-|+|.+|.|||++|+.|++...... ... ..+.|+.....+...
T Consensus 17 ~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 17 QKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred CCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 334558999999999998887631 12567889999999999999999998432211 111 245666666678888
Q ss_pred HHHHHHHHhhhhhcccCCCCHHHHH---HhH---h-------------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCC
Q 044931 243 VLIDILQQINDEMLVEASSPEEELA---SSL---A-------------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSD 303 (889)
Q Consensus 243 ~~~~i~~~l~~~~~~~~~~~~~~l~---~~l---~-------------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~ 303 (889)
++..|++++.+.... .....+.+. ..+ . +...+....+.. ++... .....||.++..
T Consensus 97 ~~~~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~-~~~~~--~s~~~vI~i~n~ 172 (318)
T 3te6_A 97 LYEKIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEK-WISSK--NSKLSIICVGGH 172 (318)
T ss_dssp HHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHH-HHHCS--SCCEEEEEECCS
T ss_pred HHHHHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHh-ccccc--CCcEEEEEEecC
Confidence 999999998654221 112223332 221 1 111222222222 12110 112234444554
Q ss_pred CCCcccc-cc-----cC-CCeeeccCCChhhHHHHHHHHhc
Q 044931 304 ENNIPLE-AK-----AA-GSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 304 ~~~v~~~-~~-----~~-~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
.+ .... .. .. ...+.+.+++.+|-.+++.+++.
T Consensus 173 ~d-~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 173 NV-TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp SC-CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cc-cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 43 2221 11 11 14688999999999999998764
No 180
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.60 E-value=0.00053 Score=74.99 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=49.3
Q ss_pred cccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccE
Q 044931 741 RVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRV 820 (889)
Q Consensus 741 ~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 820 (889)
.+..|+.+.+...+..+....+.. +.+|+.+.+..+ +.......+..|++|+.+.+.++.... .....+.++++|+.
T Consensus 238 ~~~~L~~i~lp~~v~~I~~~aF~~-~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 238 GMKALDEIAIPKNVTSIGSFLLQN-CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSS 314 (379)
T ss_dssp TCSSCCEEEECTTCCEECTTTTTT-CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCE
T ss_pred CCccceEEEcCCCccEeCccccce-eehhcccccccc-ceeccccccccccccccccccccccce-ehhhhhcCCCCCCE
Confidence 344555555554444444312222 356666666443 222333445566666666665332211 11233455566666
Q ss_pred EEccccCCCcceec-ccCcccccceeec
Q 044931 821 LKLWNLFSLEEWTV-EKGAMPRLRELEI 847 (889)
Q Consensus 821 L~l~~~~~l~~~~~-~~~~lp~L~~L~l 847 (889)
+.|..+ ++.+.. .+..|++|+.+.|
T Consensus 315 i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred EEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 666532 444432 3455566666655
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=0.00036 Score=75.57 Aligned_cols=190 Identities=18% Similarity=0.174 Sum_probs=98.2
Q ss_pred ccccchhhhHHHHHHHH-hccCCCCceEEEEECCCCCcHHHHHHHHhccc---cccc-cCC-------------------
Q 044931 172 INLVGLEEQINNLVSLL-IREHNHNSQVIAIVGEAGSGKTTLTRSVYDRV---DVKR-HFA------------------- 227 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L-~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-~F~------------------- 227 (889)
.+++|.+..++.+..++ ..+. ... +.|+|..|+||||+|+.+.+.. .... .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~--~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD--LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC--CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC--CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 56899999999999888 4432 233 9999999999999999887621 0000 000
Q ss_pred -ceEEEEeCCcc-cHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh---h-----hhHHhHHHHHhhhccCCCCCCCcEE
Q 044931 228 -KRAWVRVRSEA-KVRDVLIDILQQINDEMLVEASSPEEELASSLA---T-----LTQQVWQVLRNSLYYSSSKSRDGKI 297 (889)
Q Consensus 228 -~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~---v-----~~~~~~~~l~~~l~~~~~~~~gs~i 297 (889)
..+.+..+... ......++++..+.....-........+...-+ + .+.+..+.+...+... ..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~---~~~~~~ 167 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY---SKNIRL 167 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS---TTTEEE
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh---cCCCEE
Confidence 01122211110 000123333333321110000000000000000 1 1123344455555443 346778
Q ss_pred EEEcCCCCCcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 298 ILTTSDENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 298 ivTTR~~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
|+||.+...+..........+++++++.++..+.+.+.+. ..+. ..+ ..+....|++.++|.+-.+..+.
T Consensus 168 Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~-~~~~----~~~---~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVT-NERI----QLE---TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH-HHTC----EEC---CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHH-HcCC----CCC---cHHHHHHHHHHcCCCHHHHHHHH
Confidence 8877765424333333336799999999999999988774 2221 011 03456778889999886554444
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=0.00053 Score=78.12 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=98.1
Q ss_pred ccccchhhhHHHHHHHHhccC--------------CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 172 INLVGLEEQINNLVSLLIREH--------------NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~--------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.+++|+++.++++.++|.... .+..+.+.|+|.+|+||||+|+.+++. . .+ .++.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 679999999999999997521 013478999999999999999999983 3 12 2334444443
Q ss_pred ccHHHHHHHHHHHhhhhhcccCC-CCHHH-----HHHhHh-hhhH--------HhHHHHHhhhccCCCCCCCcEEEEEcC
Q 044931 238 AKVRDVLIDILQQINDEMLVEAS-SPEEE-----LASSLA-TLTQ--------QVWQVLRNSLYYSSSKSRDGKIILTTS 302 (889)
Q Consensus 238 ~~~~~~~~~i~~~l~~~~~~~~~-~~~~~-----l~~~l~-v~~~--------~~~~~l~~~l~~~~~~~~gs~iivTTR 302 (889)
... ..+...+............ ..... -...+- +++. ..+..+...+... +..||+++.
T Consensus 114 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-----~~~iIli~~ 187 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-----STPLILICN 187 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-----SSCEEEEES
T ss_pred chH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-----CCCEEEEEc
Confidence 332 2222222211110000000 00000 000000 1111 1234444444433 334555554
Q ss_pred CCC-CcccccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCC-CchHHHHHhhh
Q 044931 303 DEN-NIPLEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGG-LPIRIVLLGGL 377 (889)
Q Consensus 303 ~~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~g~~ 377 (889)
... ............+++++++.++..+.+...+. .... ..+ .+....|++.++| ++-|+..+...
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~-~~~~----~i~----~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI-REKF----KLD----PNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH-HHTC----CCC----TTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH-HcCC----CCC----HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 322 01111222225789999999999999988775 3221 122 2345678888998 55566665443
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.44 E-value=0.003 Score=68.21 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=96.8
Q ss_pred cccccchhhhHHHHHHHHhcc---------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCccc--
Q 044931 171 EINLVGLEEQINNLVSLLIRE---------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAK-- 239 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-- 239 (889)
-.+++|.+..++.|.+.+... .....+.|.|+|.+|+|||+||+.+++ ..... .+.++.+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGAT---FFSISASSLTSKW 157 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTCE---EEEEEGGGGCCSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCCe---EEEEehHHhhccc
Confidence 357999999999999887531 011457899999999999999999988 33221 23444433211
Q ss_pred ---HHHHHHHHHHHhhhhhccc-CCCCHHHHHHhH----hhhhHHhHHHHHhhhccCC-CCCCCcEEEEEcCCCCCcccc
Q 044931 240 ---VRDVLIDILQQINDEMLVE-ASSPEEELASSL----ATLTQQVWQVLRNSLYYSS-SKSRDGKIILTTSDENNIPLE 310 (889)
Q Consensus 240 ---~~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l----~v~~~~~~~~l~~~l~~~~-~~~~gs~iivTTR~~~~v~~~ 310 (889)
.....+.+..........- --+..+.+...- .-........+...+.... ....+..||.||.....+...
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 2233333333222111000 000111110000 0001111222333222210 002244556567554313222
Q ss_pred cccC-CCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCC-CchHHHHHh
Q 044931 311 AKAA-GSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGG-LPIRIVLLG 375 (889)
Q Consensus 311 ~~~~-~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~g 375 (889)
.... ...+.+...+.++..+++...+. .... .. ..+....|++.+.| .+-.|..+.
T Consensus 238 l~~Rf~~~i~i~~p~~~~r~~il~~~~~-~~~~----~l----~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 238 ARRRLVKRLYIPLPEASARKQIVINLMS-KEQC----CL----SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHH-TSCB----CC----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHhhCceEEEeCCcCHHHHHHHHHHHHh-hcCC----Cc----cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2111 14678899999999999988774 2211 11 13456778888888 455565554
No 184
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.44 E-value=0.0009 Score=69.89 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=83.8
Q ss_pred cccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc--
Q 044931 171 EINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA-- 238 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-- 238 (889)
-.+++|.++.++.|.+.+... +....+-+.|+|.+|+|||+||+.+++. .... .+.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~~ 90 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVKK 90 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHHh
Confidence 467999999999999888542 0014567999999999999999999983 3222 2223322211
Q ss_pred ---cHHHHHHHHHHHhhhhhccc-CCCCHHHHHHhHh----hhh---HHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCc
Q 044931 239 ---KVRDVLIDILQQINDEMLVE-ASSPEEELASSLA----TLT---QQVWQVLRNSLYYSSSKSRDGKIILTTSDENNI 307 (889)
Q Consensus 239 ---~~~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l~----v~~---~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v 307 (889)
.....+..+..........- --+..+.+...-. -.+ ......+...+... ....+..||.||.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF-DARGDVKIIGATNRPDIL 169 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT-CSSSSEEEEEECSCGGGB
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC-CCCCCEEEEEeCCCchhc
Confidence 12233344443332221100 0001111110000 000 01112222222111 002356788888765422
Q ss_pred cccccc---CCCeeeccCCChhhHHHHHHHHhc
Q 044931 308 PLEAKA---AGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 308 ~~~~~~---~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
...... ....+.++..+.++-.++|...+.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 221111 114688999999999999998875
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.40 E-value=0.0023 Score=65.74 Aligned_cols=184 Identities=9% Similarity=0.048 Sum_probs=89.5
Q ss_pred ccccchhhhHHHHHHHHhc---cCC------CCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc----
Q 044931 172 INLVGLEEQINNLVSLLIR---EHN------HNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA---- 238 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~---~~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~---- 238 (889)
.+++|.++.++.|.+++.. ... ...+-|.|+|.+|+|||++|+.+++ ..... .+.+..+.-.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEVIG 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhhcc
Confidence 5789999988887766532 110 2345688999999999999999998 33222 2334333211
Q ss_pred -cHHHHHHHHHHHhhhhhccc-CCCCHHHHHHhH--------hhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcc
Q 044931 239 -KVRDVLIDILQQINDEMLVE-ASSPEEELASSL--------ATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIP 308 (889)
Q Consensus 239 -~~~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l--------~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~ 308 (889)
.....+..++.........- --+..+.+...- ..........+...+.... ...+..||.||.....+.
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADILD 159 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-TTCCEEEEEEESCGGGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-CCCCEEEEecCCChhhcC
Confidence 11223333443332211100 000000010000 0000011122222222210 023556666775543121
Q ss_pred cccc---cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch
Q 044931 309 LEAK---AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI 369 (889)
Q Consensus 309 ~~~~---~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 369 (889)
.... -....+.++..+.++-.+++...+. .... . .........+++.+.|.+-
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~-~~~~------~-~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLK-SLKL------T-QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH-HTTC------C-BTHHHHHHHHHHTCTTCCH
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH-hCCC------C-cchhhHHHHHHHHCCCCCH
Confidence 1111 1125678999999999999988764 2221 1 2222234678888888754
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.38 E-value=0.00076 Score=75.03 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=81.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCc--eEEEEeCCcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh--
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAK--RAWVRVRSEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-- 271 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-- 271 (889)
...+.|+|.+|+||||||+.+++ .....+.. +++++.. .+..++...+.... ...+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~-------~~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK-------LNEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC-------HHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc-------HHHHHHHhcCC
Confidence 56799999999999999999998 45444432 4455432 22333333322110 111111110
Q ss_pred -----hhhH-------HhHHHHHhhhccCCCCCCCcEEEEEcCCCCC--------cccccccCCCeeeccCCChhhHHHH
Q 044931 272 -----TLTQ-------QVWQVLRNSLYYSSSKSRDGKIILTTSDENN--------IPLEAKAAGSTLHVRRLNEEESWKL 331 (889)
Q Consensus 272 -----v~~~-------~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~--------v~~~~~~~~~~~~l~~L~~~es~~L 331 (889)
+++. ...+.+...+.... ..|..||+||.+... +...+... .++.+++++.++-.++
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~--~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g-~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDEETRKSI 271 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHH--TTTCEEEEEESSCGGGCSSCCHHHHHHHHSS-BCCBCCCCCHHHHHHH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHH--HCCCeEEEEECCCHHHHHHHHHHHHhhccCC-eEEEeCCCCHHHHHHH
Confidence 1111 11222333221100 246789998886420 11112222 5789999999999999
Q ss_pred HHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 044931 332 LLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIV 372 (889)
Q Consensus 332 f~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 372 (889)
+.+.+. .... ..+ + +....|++.++|.+-.+.
T Consensus 272 L~~~~~-~~~~----~i~-~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 272 ARKMLE-IEHG----ELP-E---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHH-HHTC----CCC-T---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHH-HcCC----CCC-H---HHHHHHHHhcCCCHHHHH
Confidence 998874 2221 222 2 335677888888875443
No 187
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=0.00016 Score=70.36 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=39.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..++||+++++++.+++... ..+.+.|+|.+|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999874 3466889999999999999999883
No 188
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.34 E-value=0.00046 Score=76.69 Aligned_cols=185 Identities=11% Similarity=0.098 Sum_probs=91.0
Q ss_pred ccccchhhhH---HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHH
Q 044931 172 INLVGLEEQI---NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDIL 248 (889)
Q Consensus 172 ~~~vGr~~~~---~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 248 (889)
.++||.+..+ ..+...+... .+..+.|+|.+|+||||||+.+.+ .....| .-++... ..... ++.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~---~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f---~~l~a~~-~~~~~-ir~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG---HLHSMILWGPPGTGKTTLAEVIAR--YANADV---ERISAVT-SGVKE-IREAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT---CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE---EEEETTT-CCHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC---CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEEecc-CCHHH-HHHHH
Confidence 5689999888 6777777765 447899999999999999999998 333322 1122211 12222 22222
Q ss_pred HHhhhhhcccCCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC-CcccccccCCCeeeccCCChhh
Q 044931 249 QQINDEMLVEASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN-NIPLEAKAAGSTLHVRRLNEEE 327 (889)
Q Consensus 249 ~~l~~~~~~~~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~-~v~~~~~~~~~~~~l~~L~~~e 327 (889)
............ . --+.+.+.-.+....+.+...+..+ .-.-|..||.+.. .+...+.....++.+.+++.++
T Consensus 96 ~~a~~~~~~~~~-~-iLfIDEI~~l~~~~q~~LL~~le~~----~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~ed 169 (447)
T 3pvs_A 96 ERARQNRNAGRR-T-ILFVDEVHRFNKSQQDAFLPHIEDG----TITFIGATTENPSFELNSALLSRARVYLLKSLSTED 169 (447)
T ss_dssp HHHHHHHHTTCC-E-EEEEETTTCC------CCHHHHHTT----SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHH
T ss_pred HHHHHhhhcCCC-c-EEEEeChhhhCHHHHHHHHHHHhcC----ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHH
Confidence 221111000000 0 0000000001112233444444433 1222333555542 0222222222578899999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 044931 328 SWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLL 374 (889)
Q Consensus 328 s~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 374 (889)
-..++.+.+. .....- ......-..+....|++.++|.+-.+..+
T Consensus 170 i~~il~~~l~-~~~~~~-~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 170 IEQVLTQAME-DKTRGY-GGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHHHHHHHHH-CTTTSS-TTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHH-HHhhhh-ccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 9999988875 211000 00000122455677888888887654433
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.32 E-value=0.00064 Score=73.09 Aligned_cols=176 Identities=10% Similarity=0.116 Sum_probs=96.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccc-cCC-ceEEEEeCCcccHHHHHHHHHH
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKR-HFA-KRAWVRVRSEAKVRDVLIDILQ 249 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~v~~~~~~~~~~~~i~~ 249 (889)
.+++|.+..++.|...+..+. +..+.++|..|+||||+|+.+.+. +.. .+. .+.-++.+.......+ ++++.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~---~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~i-r~~i~ 98 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK---LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVV-RNQIK 98 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC---CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHH-HTHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHH-HHHHH
Confidence 458899999999888887653 334899999999999999999883 221 111 1223333332233222 22333
Q ss_pred HhhhhhcccCCCCHHHHHHhHh-hh-----hHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCC
Q 044931 250 QINDEMLVEASSPEEELASSLA-TL-----TQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRL 323 (889)
Q Consensus 250 ~l~~~~~~~~~~~~~~l~~~l~-v~-----~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L 323 (889)
.+.....+-.. . .++. ++ ..+..+.+...+... ....++|++|.....+..........+++.++
T Consensus 99 ~~~~~~~~~~~-~-----~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l 169 (340)
T 1sxj_C 99 DFASTRQIFSK-G-----FKLIILDEADAMTNAAQNALRRVIERY---TKNTRFCVLANYAHKLTPALLSQCTRFRFQPL 169 (340)
T ss_dssp HHHHBCCSSSC-S-----CEEEEETTGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred HHHhhcccCCC-C-----ceEEEEeCCCCCCHHHHHHHHHHHhcC---CCCeEEEEEecCccccchhHHhhceeEeccCC
Confidence 22211100000 0 0010 11 123344455554443 34567777775433122222222257889999
Q ss_pred ChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 324 NEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 324 ~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
+.++..+.+...+. .... ..+ .+..+.|++.++|-+--+
T Consensus 170 ~~~~~~~~l~~~~~-~~~~----~i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 170 PQEAIERRIANVLV-HEKL----KLS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CHHHHHHHHHHHHH-TTTC----CBC----HHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHH-HcCC----CCC----HHHHHHHHHHcCCCHHHH
Confidence 99999988887764 2221 122 345678888899988644
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.30 E-value=0.0017 Score=68.64 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=82.4
Q ss_pred ccccchhhhHHHHHHHHhccC------------CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc--
Q 044931 172 INLVGLEEQINNLVSLLIREH------------NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE-- 237 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-- 237 (889)
.+++|.++.++.|.+++.... ......+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 469999999999887765310 124557999999999999999988873221111111223333211
Q ss_pred c-----cHHHHHHHHHHHhhhhhc--cc-CCC---CHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCC---
Q 044931 238 A-----KVRDVLIDILQQINDEML--VE-ASS---PEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSD--- 303 (889)
Q Consensus 238 ~-----~~~~~~~~i~~~l~~~~~--~~-~~~---~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~--- 303 (889)
. ....-...++........ ++ ... ..+ .-+..+....+...+... ..+..||.||..
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~------~~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENN---RDDLVVILAGYADRM 181 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHHH
T ss_pred hhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCc------ccccHHHHHHHHHHHhcC---CCCEEEEEeCChHHH
Confidence 0 011112222222211100 00 000 000 000223334455555544 456778888753
Q ss_pred -------CCCcccccccCCCeeeccCCChhhHHHHHHHHhc
Q 044931 304 -------ENNIPLEAKAAGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 304 -------~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
+. +...+. ..+.+++++.++-.+++...+.
T Consensus 182 ~~~~~~~~~-l~~R~~---~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 182 ENFFQSNPG-FRSRIA---HHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHSTT-HHHHEE---EEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHH-HHHhCC---eEEEcCCcCHHHHHHHHHHHHH
Confidence 23 333322 6789999999999999988775
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.24 E-value=0.0039 Score=66.39 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=79.9
Q ss_pred HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHhhhhhcccCC
Q 044931 181 INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQINDEMLVEAS 260 (889)
Q Consensus 181 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 260 (889)
...+..++..... ....+.|+|.+|+||||||+.+++. ....-..+++++.. ++...+...+...
T Consensus 23 ~~~~~~~~~~~~~-~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 23 YEVVKEALENLGS-LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHTTTT-SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHhCcCC-CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC------
Confidence 3445554444322 3567999999999999999999983 32221134455432 2233333322211
Q ss_pred CCHHHHHHhHh------hhhH-------HhHHHHHhhhccCCCCCCCcEEEEEcCCCCC----ccc----ccccCCCeee
Q 044931 261 SPEEELASSLA------TLTQ-------QVWQVLRNSLYYSSSKSRDGKIILTTSDENN----IPL----EAKAAGSTLH 319 (889)
Q Consensus 261 ~~~~~l~~~l~------v~~~-------~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~----v~~----~~~~~~~~~~ 319 (889)
.......... +++. ...+.+...+.... ..|..||+||..... +.. .+... .+++
T Consensus 88 -~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~--~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~-~~i~ 163 (324)
T 1l8q_A 88 -TINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY--LLEKQIILASDRHPQKLDGVSDRLVSRFEGG-ILVE 163 (324)
T ss_dssp -CHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH--HTTCEEEEEESSCGGGCTTSCHHHHHHHHTS-EEEE
T ss_pred -cHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHH--HCCCeEEEEecCChHHHHHhhhHhhhcccCc-eEEE
Confidence 0111111111 1111 11122222221100 235678888865420 111 11111 5689
Q ss_pred ccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCch
Q 044931 320 VRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPI 369 (889)
Q Consensus 320 l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 369 (889)
+++ +.++-.+++...+. .... ..+ .+....|++.+ |.+-
T Consensus 164 l~~-~~~e~~~il~~~~~-~~~~----~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLK-EFNL----ELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp CCC-CHHHHHHHHHHHHH-HTTC----CCC----HHHHHHHHHHC-SSHH
T ss_pred eCC-CHHHHHHHHHHHHH-hcCC----CCC----HHHHHHHHHhC-CCHH
Confidence 999 99999999998875 3221 222 34456777777 6553
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.23 E-value=0.00048 Score=73.53 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.+++|.++.++.+.+++.... ...++.+.|.+|+|||++|+.+.+. ... ..+.++.+.. .. +.+.+.+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~--~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~-~~-~~i~~~~~~~ 96 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK--IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDC-KI-DFVRGPLTNF 96 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC--CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTC-CH-HHHHTHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC--CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEccccc-CH-HHHHHHHHHH
Confidence 679999999999999998654 3467888889999999999999983 321 2345554442 22 2333333332
Q ss_pred hhhhc----cc----CCCCHHHHHHhHhhhh-HHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccC
Q 044931 252 NDEML----VE----ASSPEEELASSLATLT-QQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRR 322 (889)
Q Consensus 252 ~~~~~----~~----~~~~~~~l~~~l~v~~-~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~ 322 (889)
..... .. ++.. ... .+..+.+...+... ..+.++|+||.....+..........+++++
T Consensus 97 ~~~~~~~~~~~vliiDEi~---------~l~~~~~~~~L~~~le~~---~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~ 164 (324)
T 3u61_B 97 ASAASFDGRQKVIVIDEFD---------RSGLAESQRHLRSFMEAY---SSNCSIIITANNIDGIIKPLQSRCRVITFGQ 164 (324)
T ss_dssp HHBCCCSSCEEEEEEESCC---------CGGGHHHHHHHHHHHHHH---GGGCEEEEEESSGGGSCTTHHHHSEEEECCC
T ss_pred HhhcccCCCCeEEEEECCc---------ccCcHHHHHHHHHHHHhC---CCCcEEEEEeCCccccCHHHHhhCcEEEeCC
Confidence 21110 00 0000 011 22233343333332 2356788887654312222222225789999
Q ss_pred CChhhHHHH-------HHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 044931 323 LNEEESWKL-------LLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRI 371 (889)
Q Consensus 323 L~~~es~~L-------f~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 371 (889)
++.++-.++ +...+. ..+ ...+ + .+....|++.++|.+-.+
T Consensus 165 ~~~~e~~~il~~~~~~l~~~~~-~~~----~~~~-~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 165 PTDEDKIEMMKQMIRRLTEICK-HEG----IAIA-D--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHT----CCBS-C--HHHHHHHHHHTCSCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HcC----CCCC-c--HHHHHHHHHhCCCCHHHH
Confidence 998884333 222222 111 1111 1 256677888888876543
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.22 E-value=0.0014 Score=70.01 Aligned_cols=169 Identities=12% Similarity=0.102 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc--------------------ccCCceEEEEeC--
Q 044931 178 EEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK--------------------RHFAKRAWVRVR-- 235 (889)
Q Consensus 178 ~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~v~-- 235 (889)
++..+.+...+..+. -...+.++|..|+||||+|+.+.+...-. .++| ..++...
T Consensus 8 ~~~~~~l~~~i~~~~--~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~ 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR--GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG 84 (334)
T ss_dssp HHHHHHHHHHHHTTC--CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT
T ss_pred HHHHHHHHHHHHcCC--cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc
Confidence 445566777666543 35679999999999999999987631110 1122 3344432
Q ss_pred -CcccHHHHHHHHHHHhhhhhcccCCCCHHHHHHhHh-h-----hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcc
Q 044931 236 -SEAKVRDVLIDILQQINDEMLVEASSPEEELASSLA-T-----LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIP 308 (889)
Q Consensus 236 -~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-v-----~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~ 308 (889)
....+.+ .+++.+.+...... .. .++. + .+.+..+.+...+... ..++.+|++|.+.+.+.
T Consensus 85 ~~~~~i~~-ir~l~~~~~~~~~~-~~-------~kvviIdead~l~~~a~naLLk~lEep---~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 85 KNTLGVDA-VREVTEKLNEHARL-GG-------AKVVWVTDAALLTDAAANALLKTLEEP---PAETWFFLATREPERLL 152 (334)
T ss_dssp CSSBCHHH-HHHHHHHTTSCCTT-SS-------CEEEEESCGGGBCHHHHHHHHHHHTSC---CTTEEEEEEESCGGGSC
T ss_pred CCCCCHHH-HHHHHHHHhhcccc-CC-------cEEEEECchhhcCHHHHHHHHHHhcCC---CCCeEEEEEeCChHhCc
Confidence 2233322 34444444321100 00 0000 1 1223445566666554 45677777776654244
Q ss_pred cccccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 044931 309 LEAKAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGLPIRIVLLG 375 (889)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~g 375 (889)
.........+++.+++.++..+.+.+... - + .+.+..+++.++|.|..+..+.
T Consensus 153 ~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-~---------~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 153 ATLRSRCRLHYLAPPPEQYAVTWLSREVT-M---------S----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHCC-C---------C----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred HHHhhcceeeeCCCCCHHHHHHHHHHhcC-C---------C----HHHHHHHHHHcCCCHHHHHHHh
Confidence 33333336899999999999998887652 1 1 2345678899999997765544
No 194
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.22 E-value=0.004 Score=64.39 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=36.1
Q ss_pred ccccchhhhHHHHHH-------HHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVS-------LLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..++|.+..++++.. .+........+.+.|+|.+|+|||+||+.+++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 568888888777666 333222225678999999999999999999983
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.22 E-value=0.0036 Score=67.93 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=37.2
Q ss_pred cccccchhhhHHH---HHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINN---LVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-+++||++..++. +.+.+..... ..+.+.|+|.+|+|||++|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~-~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI-AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC-TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999998776 4455554432 3468999999999999999999983
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.20 E-value=0.00023 Score=68.93 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=39.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..++||+++++.+.+.+... ..+.+.|+|.+|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~---~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR---TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS---SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC---CCCceEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999774 3466789999999999999999883
No 197
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.15 E-value=0.00026 Score=72.39 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=55.1
Q ss_pred CCCccEEEeeccCCCCC--CchhhhcCCCCCeEEeecCccCCCcceeCCCCCCcccEEEccccCCCccee-------ccc
Q 044931 766 YPNLKILTLSMSRLVYD--PMPLLEELAHLNILRLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEWT-------VEK 836 (889)
Q Consensus 766 ~~~L~~L~L~~~~l~~~--~~~~l~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~ 836 (889)
+++|+.|+|++|.+.+. .+..++.+++|+.|+|++|.+.+..-...+.++ +|+.|.|++|+....+| ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 48899999999988753 235567899999999998888664222223333 88888888888544333 124
Q ss_pred Ccccccceeec
Q 044931 837 GAMPRLRELEI 847 (889)
Q Consensus 837 ~~lp~L~~L~l 847 (889)
..||+|+.|+=
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 55777777654
No 198
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.12 E-value=0.0028 Score=69.16 Aligned_cols=106 Identities=8% Similarity=-0.039 Sum_probs=69.3
Q ss_pred hhhcccccccceec--cc--CC-ccccccccccccccccccccccccccCCCccEEEeeccCCCCCCchhhhcCCCCCeE
Q 044931 722 NLLVCARTDGLVEI--EY--GE-ARVTTLQELYLRGSIHSFFDYGIEWNYPNLKILTLSMSRLVYDPMPLLEELAHLNIL 796 (889)
Q Consensus 722 ~~l~~L~~L~l~~~--~l--~~-~~~~~L~~L~l~~~~~~~p~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~L~~L~~L 796 (889)
..+..|+.+.+... .+ .. ..+.+|+.+.+...+..++...+. .|.+|+.+.+.++.+.......+.+|.+|+.+
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~-~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCS-GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTT-TCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred cCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccc-cccccccccccccccceehhhhhcCCCCCCEE
Confidence 34455665555432 11 12 557788888887777667662333 45999999999887765666788999999999
Q ss_pred EeecCccCCCcceeCCCCCCcccEEEccccCCCcce
Q 044931 797 RLYRGAYLGEETTCSSGGFPQLRVLKLWNLFSLEEW 832 (889)
Q Consensus 797 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 832 (889)
.|..+ ... .-...+.++++|+.+.+..+ ++.+
T Consensus 316 ~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~--v~~I 347 (379)
T 4h09_A 316 TLPTA-LKT-IQVYAFKNCKALSTISYPKS--ITLI 347 (379)
T ss_dssp ECCTT-CCE-ECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred EcCcc-ccE-EHHHHhhCCCCCCEEEECCc--cCEE
Confidence 99733 211 11235667788888887543 4444
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.09 E-value=0.0026 Score=61.20 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 177 LEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+.++.+.+++..-.......+.|+|.+|+||||||+.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555555554432223478999999999999999999983
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.06 E-value=0.00025 Score=68.81 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=68.6
Q ss_pred hhhhcccCCCceeeeEEEecCc-ccCC-----CChHHhccccCCcEEeCCCCCCcc-----cccccCCCCCCcEEeecCC
Q 044931 573 MITAKSKRGGFVLLTVLDLEGV-YKLK-----LSDDVIGKLLNLRYLGLRSTFIDS-----LPKSVGILPRLETLDVKHT 641 (889)
Q Consensus 573 ~~~~~~~~~~l~~Lr~L~L~~~-~i~~-----l~~~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~ 641 (889)
.+...+ . ..+.|+.|+|++| .+.. +.. .+...++|++|+|++|.|.. +...+...++|++|+|++|
T Consensus 27 ~l~~~l-~-~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 27 TLKRIQ-N-NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHH-T-TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHH-h-cCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 344444 5 7889999999999 7763 233 66778899999999998863 4556667789999999999
Q ss_pred Cccc-----Cchhhhhccccccccc--cccc
Q 044931 642 KLRF-----LPDSIWKAKKLQHLYL--NWIH 665 (889)
Q Consensus 642 ~l~~-----lp~~i~~L~~L~~L~l--~~~~ 665 (889)
.|.. +...+...++|++|++ ++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 8873 4566777788999999 5543
No 201
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.00 E-value=0.0033 Score=66.81 Aligned_cols=188 Identities=11% Similarity=0.083 Sum_probs=94.8
Q ss_pred cccccchhhhHHHHHHHHhcc---------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc----
Q 044931 171 EINLVGLEEQINNLVSLLIRE---------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE---- 237 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---- 237 (889)
-.+++|.++.++.|.+.+... .....+-|.|+|.+|+|||+||+++++ .....| +.++.+.-
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~~l~~~~ 91 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSSDLVSKW 91 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHHHHHTTT
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchHHHhhcc
Confidence 367999999999999888311 111346799999999999999999998 333222 22332211
Q ss_pred -ccHHHHHHHHHHHhhhhhc-----cc-CC--CCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcc
Q 044931 238 -AKVRDVLIDILQQINDEML-----VE-AS--SPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIP 308 (889)
Q Consensus 238 -~~~~~~~~~i~~~l~~~~~-----~~-~~--~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~ 308 (889)
-.....++.+......... ++ .. .....-... ........+...+........+..||.||.....+.
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------C---CTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcch---HHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 1122333333333222110 00 00 000000000 000112222222221100134566666776544122
Q ss_pred cccc-cCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCC-chHHHHHh
Q 044931 309 LEAK-AAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGL-PIRIVLLG 375 (889)
Q Consensus 309 ~~~~-~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~g 375 (889)
..+. -....+.+...+.++-.++|..++. .... ..+ ......|++.+.|. +-.|..+.
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~-~~~~----~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVG-DTPC----VLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHT-TCCC----CCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhc-cCCC----CCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 1111 1125678899999999999998875 3221 111 33456788888774 44444443
No 202
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.0087 Score=63.45 Aligned_cols=184 Identities=11% Similarity=0.063 Sum_probs=94.8
Q ss_pred cccccchhhhHHHHHHHHhcc---------CCCCceEEEEECCCCCcHHHHHHHHhccccc-cccCCceEEEEeCCcc--
Q 044931 171 EINLVGLEEQINNLVSLLIRE---------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDV-KRHFAKRAWVRVRSEA-- 238 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~-- 238 (889)
-.+++|.++.++.|.+.+... .....+-|.|+|.+|+|||+||+++++. . ... .+.++.+.-.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~~i~~~~l~~~ 85 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANNST---FFSISSSDLVSK 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTSCE---EEEEECCSSCCS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCCCc---EEEEEhHHHHhh
Confidence 367999999999888877421 0113467999999999999999999983 3 111 2223322211
Q ss_pred ---cHHHHHHHHHHHhhhhhc-----cc-C------CCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCC
Q 044931 239 ---KVRDVLIDILQQINDEML-----VE-A------SSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSD 303 (889)
Q Consensus 239 ---~~~~~~~~i~~~l~~~~~-----~~-~------~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~ 303 (889)
.....++.+......... ++ + ....... .......+...+........+..||.||..
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~-------~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA-------ARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTH-------HHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchH-------HHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 123334444433322111 00 0 0000000 001112222222221000234556666765
Q ss_pred CCCccccccc-CCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCC-chHHHHHh
Q 044931 304 ENNIPLEAKA-AGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGL-PIRIVLLG 375 (889)
Q Consensus 304 ~~~v~~~~~~-~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~g 375 (889)
...+...+.. ....+.+...+.++-.++|..+.. .... .. .......|++.+.|. +-.|..+.
T Consensus 159 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-~~~~----~l----~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 159 PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG-TTQN----SL----TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-TCCB----CC----CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh-cCCC----CC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4423222211 125688899999999999988774 2211 11 134556788888887 44455544
No 203
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.89 E-value=0.0094 Score=65.15 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=38.8
Q ss_pred cccccchhhhHHHHHHHHhccC---------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIREH---------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|.+..++.|.+++.... ....+-|.|+|.+|+|||+||+.+++
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999998884310 01346799999999999999999988
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.86 E-value=0.032 Score=61.98 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=39.5
Q ss_pred ccccccchhhhHHHHHHHHhcc---------CCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 170 QEINLVGLEEQINNLVSLLIRE---------HNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.+++|.+..++.|.+.+... .....+-|.|+|.+|+|||+||+.+++.
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999998887321 1113578999999999999999999983
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.83 E-value=0.0008 Score=62.21 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=36.6
Q ss_pred cccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 173 NLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
++||++..++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 589999999999998865432 2345789999999999999999983
No 206
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.71 E-value=0.019 Score=61.73 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=92.3
Q ss_pred cccccchhhhHHHHHHHHhcc---------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc----
Q 044931 171 EINLVGLEEQINNLVSLLIRE---------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE---- 237 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---- 237 (889)
-.+++|.+..++.|.+.+... .....+-|.|+|.+|+|||+||+++++. ....| +.+..+.-
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~~l~~~~ 124 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKW 124 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHHHHHSCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHHHHhhhh
Confidence 357999999999999887421 1112356889999999999999999983 32222 22222111
Q ss_pred -ccHHHHHHHHHHHhhhhhc-----cc-CCCCHH--HHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcc
Q 044931 238 -AKVRDVLIDILQQINDEML-----VE-ASSPEE--ELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIP 308 (889)
Q Consensus 238 -~~~~~~~~~i~~~l~~~~~-----~~-~~~~~~--~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~ 308 (889)
-.....++.+......... ++ ...... .-... ........+...+........+..||.||.....+.
T Consensus 125 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~---~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp ---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CT---HHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcch---HHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 0112333344333221111 11 000000 00000 000011122222211100023555666776543122
Q ss_pred ccc-ccCCCeeeccCCChhhHHHHHHHHhcCCCccccCCCCCChhHHHHHHHHHHHhCCC-chHHHHHh
Q 044931 309 LEA-KAAGSTLHVRRLNEEESWKLLLKRALLPRAAESDGLFNNSELVTFKERILKKCGGL-PIRIVLLG 375 (889)
Q Consensus 309 ~~~-~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~g 375 (889)
..+ .-....+.+...+.++-.+++..+.. .... ..+ ......|++.+.|. +-.|..+.
T Consensus 202 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~-~~~~----~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 202 SAIRRRFERRIYIPLPDLAARTTMFEINVG-DTPS----VLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHT-TSCB----CCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHcccCEEEEeCCcCHHHHHHHHHHHHh-hCCC----CCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 211 11125678899999999999998875 3211 111 33456788888884 44454444
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.023 Score=61.10 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=85.9
Q ss_pred cccccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 169 EQEINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
+.-.++.|.++.+++|.+.+.-+ +-..++=|.++|.+|.|||.||+++++ .....| +.|..+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhh
Confidence 33467899999998887776431 113456789999999999999999998 333332 334433322
Q ss_pred -----cHHHHHHHHHHHhhhhhc-----cc-C---------CCC-HHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEE
Q 044931 239 -----KVRDVLIDILQQINDEML-----VE-A---------SSP-EEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKI 297 (889)
Q Consensus 239 -----~~~~~~~~i~~~l~~~~~-----~~-~---------~~~-~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~i 297 (889)
.....++++........+ ++ + ... ..... .....+...+... ....+-.|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~--------~~l~~lL~~lDg~-~~~~~V~v 290 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ--------RTMLELLNQLDGF-ETSKNIKI 290 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHH--------HHHHHHHHHHHTT-TCCCCEEE
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHH--------HHHHHHHHhhhcc-CCCCCeEE
Confidence 123444455444332221 11 0 000 00111 1112222222221 11335567
Q ss_pred EEEcCCCCCccccc-c--cCCCeeeccCCChhhHHHHHHHHhc
Q 044931 298 ILTTSDENNIPLEA-K--AAGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 298 ivTTR~~~~v~~~~-~--~~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
|.||...+.+-..+ . -....+++..-+.++-.++|+.+..
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 333 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR 333 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc
Confidence 77887766232222 1 2237889999999999999988775
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.02 Score=62.69 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=83.5
Q ss_pred cccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc--
Q 044931 171 EINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA-- 238 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-- 238 (889)
-.++.|.++.+++|.+.+... +-..++=|.++|.+|.|||+||+++++ .....| +.+..+.-.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~sk 254 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVDK 254 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCCS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhccc
Confidence 357889999988887776431 113467899999999999999999998 333322 334433322
Q ss_pred ---cHHHHHHHHHHHhhhhhc-----cc-C----------CCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEE
Q 044931 239 ---KVRDVLIDILQQINDEML-----VE-A----------SSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIIL 299 (889)
Q Consensus 239 ---~~~~~~~~i~~~l~~~~~-----~~-~----------~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iiv 299 (889)
.....++.+........+ ++ + ........ .....+...+... ....+..||.
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~--------~~l~~lL~~lDg~-~~~~~vivI~ 325 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQ--------RTLMELLTQMDGF-DNLGQTKIIM 325 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHH--------HHHHHHHHHHHSS-SCTTSSEEEE
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHH--------HHHHHHHHHhhcc-cCCCCeEEEE
Confidence 123344444443322211 01 0 00000111 1122233333222 1123567888
Q ss_pred EcCCCCCccccc-cc--CCCeeeccCCChhhHHHHHHHHhc
Q 044931 300 TTSDENNIPLEA-KA--AGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 300 TTR~~~~v~~~~-~~--~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
||-..+.+-..+ .. ....+++..-+.++-.++|+.+..
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhc
Confidence 887665232222 11 125688888888888889987765
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.03 Score=61.13 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=84.5
Q ss_pred cccccccchhhhHHHHHHHHhc----c------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 169 EQEINLVGLEEQINNLVSLLIR----E------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~----~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
..-.++.|.++.+++|.+.+.. . +-..++=|.+||.+|.|||.||+++++ .....| +.++.+.-.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~ 252 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLV 252 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhh
Confidence 3346789999999998876532 1 113567899999999999999999998 333322 333333221
Q ss_pred -----cHHHHHHHHHHHhhhhhccc-CCCCHHHHHHhHh----h---hhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCC
Q 044931 239 -----KVRDVLIDILQQINDEMLVE-ASSPEEELASSLA----T---LTQQVWQVLRNSLYYSSSKSRDGKIILTTSDEN 305 (889)
Q Consensus 239 -----~~~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l~----v---~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~ 305 (889)
.....++.+........+.- .-...+.+...-. - ........+...+.... ...+-.||.||...+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-SDDRVKVLAATNRVD 331 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-SSCSSEEEEECSSCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-CCCCEEEEEeCCCch
Confidence 12334444444332221100 0001111111000 0 00011223333333221 123445666887766
Q ss_pred Cccccc-cc--CCCeeeccCCChhhHHHHHHHHhc
Q 044931 306 NIPLEA-KA--AGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 306 ~v~~~~-~~--~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
.+-..+ .. ....+++..-+.++-.++|+.+..
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc
Confidence 232222 11 115688888888888888887764
No 210
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.36 E-value=0.0011 Score=61.21 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=35.0
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-+++|++..++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4689999999999888865322 2345789999999999999999983
No 211
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.0084 Score=62.81 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=84.3
Q ss_pred chhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccc-ccccCCceEEEEeCC-cccHHHHHHHHHHHhhh
Q 044931 176 GLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVD-VKRHFAKRAWVRVRS-EAKVRDVLIDILQQIND 253 (889)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~ 253 (889)
|-++.++.+...+..+. ..+..++|..|+||||+|+.+.+.-. .........++..+. ...+.+ .+++++.+..
T Consensus 1 g~~~~~~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhh
Confidence 34556667777776653 57899999999999999999987311 111122345565543 333333 3445554432
Q ss_pred hhcccCCCCHHHHHHhHh------hhhHHhHHHHHhhhccCCCCCCCcEEEEEcCCCCCcccccccCCCeeeccCCChhh
Q 044931 254 EMLVEASSPEEELASSLA------TLTQQVWQVLRNSLYYSSSKSRDGKIILTTSDENNIPLEAKAAGSTLHVRRLNEEE 327 (889)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~------v~~~~~~~~l~~~l~~~~~~~~gs~iivTTR~~~~v~~~~~~~~~~~~l~~L~~~e 327 (889)
... .. ..++. -.+.+..+.+...+... .+.+.+|++|.+...+....... .++++++++++
T Consensus 77 ~p~--~~------~~kvviIdead~lt~~a~naLLk~LEep---~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~ 143 (305)
T 2gno_A 77 SPE--LY------TRKYVIVHDCERMTQQAANAFLKALEEP---PEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKE 143 (305)
T ss_dssp CCS--SS------SSEEEEETTGGGBCHHHHHHTHHHHHSC---CTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHH
T ss_pred ccc--cC------CceEEEeccHHHhCHHHHHHHHHHHhCC---CCCeEEEEEECChHhChHHHHce--eEeCCCCCHHH
Confidence 211 00 00111 12234566677777655 55778877775554244444433 89999999999
Q ss_pred HHHHHHHHh
Q 044931 328 SWKLLLKRA 336 (889)
Q Consensus 328 s~~Lf~~~a 336 (889)
..+.+.+..
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888765
No 212
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.062 Score=58.65 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=82.6
Q ss_pred ccccchhhhHHHHHHHHhc----c------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc---
Q 044931 172 INLVGLEEQINNLVSLLIR----E------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA--- 238 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~----~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--- 238 (889)
.++.|.++.+++|.+.+.. . +-..++=|.++|.+|.|||+||+++++ +....| +.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~sk~ 283 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQKY 283 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCCCS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhccc
Confidence 5789999999988876532 1 113567899999999999999999998 333332 333333221
Q ss_pred --cHHHHHHHHHHHhhhhhc-----cc--------C--CCC-HHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEEE
Q 044931 239 --KVRDVLIDILQQINDEML-----VE--------A--SSP-EEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIILT 300 (889)
Q Consensus 239 --~~~~~~~~i~~~l~~~~~-----~~--------~--~~~-~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iivT 300 (889)
.....++.+......... ++ . ... ..... .....+...+... ....+-.||.|
T Consensus 284 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~--------~~l~~lL~~lDg~-~~~~~ViVIaA 354 (467)
T 4b4t_H 284 VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQ--------RTMLELITQLDGF-DPRGNIKVMFA 354 (467)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHH--------HHHHHHHHHHHSS-CCTTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHH--------HHHHHHHHHhhcc-CCCCcEEEEeC
Confidence 123444444444332211 00 0 000 00000 1111222222221 01234456778
Q ss_pred cCCCCCcccccc---cCCCeeeccCCChhhHHHHHHHHhc
Q 044931 301 TSDENNIPLEAK---AAGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 301 TR~~~~v~~~~~---~~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
|-..+.+-..+. -....+++..-+.++-.++|+.+..
T Consensus 355 TNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~ 394 (467)
T 4b4t_H 355 TNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSK 394 (467)
T ss_dssp CSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHT
T ss_pred CCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhc
Confidence 866652322221 1236788888899999999988775
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.071 Score=57.58 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=81.6
Q ss_pred cccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc--
Q 044931 171 EINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA-- 238 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~-- 238 (889)
-.++.|.++.+++|.+.+... +-...+=|.++|.+|.|||.||+++++ .....| +.++.+.-.
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~sk 255 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELIQK 255 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGCCS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhhhc
Confidence 357889999998888776431 113467799999999999999999998 333332 233332221
Q ss_pred ---cHHHHHHHHHHHhhhhhc-----cc-----------CCCCHHHHHHhHhhhhHHhHHHHHhhhccCCCCCCCcEEEE
Q 044931 239 ---KVRDVLIDILQQINDEML-----VE-----------ASSPEEELASSLATLTQQVWQVLRNSLYYSSSKSRDGKIIL 299 (889)
Q Consensus 239 ---~~~~~~~~i~~~l~~~~~-----~~-----------~~~~~~~l~~~l~v~~~~~~~~l~~~l~~~~~~~~gs~iiv 299 (889)
.....++.+........+ ++ .......... ....+...+... ....+-.||.
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~--------~l~~LL~~lDg~-~~~~~ViVIa 326 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQR--------TMLELLNQLDGF-DDRGDVKVIM 326 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHH--------HHHHHHHHHHHC-CCSSSEEEEE
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHH--------HHHHHHHHhhCc-CCCCCEEEEE
Confidence 233444444444332211 00 0000111111 111222222111 0023556777
Q ss_pred EcCCCCCcccccc-c--CCCeeeccCCChhhHHHHHHHHhc
Q 044931 300 TTSDENNIPLEAK-A--AGSTLHVRRLNEEESWKLLLKRAL 337 (889)
Q Consensus 300 TTR~~~~v~~~~~-~--~~~~~~l~~L~~~es~~Lf~~~a~ 337 (889)
||-..+.+-..+- . .+..+++..-+.++-.++|..+..
T Consensus 327 ATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~ 367 (437)
T 4b4t_I 327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS 367 (437)
T ss_dssp EESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT
T ss_pred eCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc
Confidence 8876662322221 1 115677888888888899988774
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.21 E-value=0.03 Score=67.02 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=38.4
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.+|||+++++.+.+.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~---~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC---CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998753 24478999999999999999988
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.21 E-value=0.0048 Score=60.47 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhccCCC-CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 179 EQINNLVSLLIREHNH-NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 179 ~~~~~l~~~L~~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
+.++.+.+++...... ..+.+.|+|.+|+|||+||+.+++ ........++|++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 3455666666554321 126899999999999999999998 44333345666654
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.19 E-value=0.0033 Score=70.55 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=38.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.+|||+++++.+.+.|.... ..-+.|+|.+|+|||++|+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~---~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT---KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS---SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998743 24567999999999999999988
No 217
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.00 E-value=0.0067 Score=59.42 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=34.8
Q ss_pred chhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 176 GLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|++.++.|.+.+.........+|+|.|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3666778888888764333568999999999999999999886
No 218
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.95 E-value=0.0066 Score=63.76 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=38.5
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|.++.++.|.+++... .-...+.|.|+|.+|+|||+||+.+++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 56999999999988887542 112456799999999999999999998
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.94 E-value=0.0076 Score=61.96 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..++|.+..+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4589999999998887765332 2356889999999999999999983
No 220
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.89 E-value=0.0069 Score=63.50 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=38.8
Q ss_pred cccccchhhhHHHHHHHHhccC---------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIREH---------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|.+..++.+.+++.... ....+.|.|+|.+|+||||+|+.+++
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3579999999999998874310 01346899999999999999999998
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.63 E-value=0.0069 Score=63.81 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=38.6
Q ss_pred cccccchhhhHHHHHHHHhcc-----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIRE-----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..++|.++.++.+...+... .......+.|+|.+|+|||++|+.+.+
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999888651 001345688999999999999999988
No 222
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.62 E-value=0.0083 Score=64.03 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=37.6
Q ss_pred ccccchhhhHHHHHHHHhcc---CCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIRE---HNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..++|.+..++.+...+... +. ....+.|+|.+|+||||||+.+++.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGE-VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTC-CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 56889888888877776543 22 4567999999999999999999983
No 223
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.51 E-value=0.0093 Score=62.60 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=38.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+.++|++..+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC-CCCcEEEECCCCchHHHHHHHHHH
Confidence 4689999999999998876433 335678999999999999999988
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.37 E-value=0.047 Score=65.29 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=38.7
Q ss_pred ccccchhhhHHHHHHHHhccCC------CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHN------HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~------~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.+..++.+...+..... .....+.++|.+|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999888875421 1233799999999999999999988
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.33 E-value=0.014 Score=61.40 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=38.7
Q ss_pred ccccchhhhHHHHHHHHhccCC------CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHN------HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~------~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.+..++.+...+..... .....+.|+|.+|+|||++|+.+++
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 5689999999999888876421 1245899999999999999999998
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.32 E-value=0.016 Score=59.20 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=35.6
Q ss_pred cccccchhhhHHHHHHHHhc---cC------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIR---EH------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~---~~------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|.+..++++.+.+.. .. ....+-|.|+|.+|+||||||+.+++
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 36799999888877665432 11 01234588999999999999999988
No 227
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.17 E-value=0.015 Score=57.18 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=29.0
Q ss_pred hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 180 QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.++|.+.+..... ...+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~-~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQP-GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCC-SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44556566554322 568999999999999999999887
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.16 E-value=0.011 Score=71.87 Aligned_cols=45 Identities=27% Similarity=0.567 Sum_probs=38.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.+|||++++..+.+.|.... ..-+.++|.+|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~---~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT---KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS---CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999997753 345789999999999999999883
No 229
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.12 E-value=0.013 Score=62.48 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=37.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|+++.++.+...+.... -+.++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~-----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG-----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC-----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC-----eEEEECCCCCcHHHHHHHHHH
Confidence 578999999999988887653 488999999999999999988
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.00 E-value=0.012 Score=60.67 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=36.2
Q ss_pred ccccchhhhHHHHHHHHhccC---------CCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREH---------NHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+++|.++.++.+.+.+..-. ....+-|.|+|.+|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 569999999888887665210 012334789999999999999999983
No 231
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.97 E-value=0.018 Score=69.05 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=38.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|||+++++.+.+.|.... ..-+.|+|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~---~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS---SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC---CCCeEEEcCCCCCHHHHHHHHHH
Confidence 469999999999999998753 34578999999999999999987
No 232
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.85 E-value=0.018 Score=64.57 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=37.8
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+||+++.++.+...+..+. -|.|+|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~-----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE-----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC-----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC-----eeEeecCchHHHHHHHHHHHHH
Confidence 679999999999888887653 4889999999999999999983
No 233
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.74 E-value=0.015 Score=55.19 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=18.9
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 044931 197 QVIAIVGEAGSGKTTLTRSV 216 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v 216 (889)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 234
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.74 E-value=0.021 Score=63.92 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=38.6
Q ss_pred ccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|.+..+++|.+++... +....+-|.|+|.+|.|||++|+.+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 56999999999998888643 011456789999999999999999988
No 235
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.61 E-value=0.025 Score=61.13 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=37.1
Q ss_pred ccccchhhhHHHHHHHHhcc------------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIRE------------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.+..++.+...+... .......|.++|.+|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999998888311 001345789999999999999999998
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.57 E-value=0.017 Score=55.14 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.52 E-value=0.03 Score=62.49 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=36.7
Q ss_pred cccccchhhhHHHHHHHH---hccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLL---IREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L---~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..+++|.++.++.+..++ ..... ..+-+.++|.+|+|||+||+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~-~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKM-AGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC-TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCC-CCCeEEEECCCcCCHHHHHHHHHHH
Confidence 377999999988655444 33322 3467889999999999999999983
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.51 E-value=0.036 Score=56.39 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=33.5
Q ss_pred ccccchhhhHHHHHHHHhccCC---------CCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHN---------HNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+++|.++.+.++.+....-.. .-.+-+.|+|.+|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5689988777666554432110 01123899999999999999999983
No 239
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.50 E-value=0.05 Score=48.78 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=35.2
Q ss_pred EEEecCcccC--CCChHHhccccCCcEEeCCCCCCccccc-ccCCCCCCcEEeecCCCcc
Q 044931 588 VLDLEGVYKL--KLSDDVIGKLLNLRYLGLRSTFIDSLPK-SVGILPRLETLDVKHTKLR 644 (889)
Q Consensus 588 ~L~L~~~~i~--~l~~~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~ 644 (889)
+++.+++.++ .+|. .+. .+|++|+|++|.|+.+|. .+..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777766 6665 222 257777777777777764 3566777777777777544
No 240
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.49 E-value=0.02 Score=60.14 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=28.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
+.+||+|.|-|||||||.|..+.-- ....=..+.-|.+...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPK 87 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 6799999999999999988777652 2221124556666543
No 241
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.037 Score=60.39 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=39.0
Q ss_pred ccccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 170 QEINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.++.|.++.+++|.+.+... +-...+=|.++|.+|.|||+||+++++
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999888876431 113466799999999999999999998
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.43 E-value=0.02 Score=55.81 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 243
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.41 E-value=0.044 Score=49.13 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=45.2
Q ss_pred cEEeCCCCCCc--ccccccCCCCCCcEEeecCCCcccCchh-hhhccccccccccccc
Q 044931 611 RYLGLRSTFID--SLPKSVGILPRLETLDVKHTKLRFLPDS-IWKAKKLQHLYLNWIH 665 (889)
Q Consensus 611 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 665 (889)
..++.+++.++ .+|..+. .+|++|+|++|+|+.+|.+ +..+++|+.|+|.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 47888999998 9997653 5799999999999999875 6779999999999865
No 244
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.39 E-value=0.019 Score=54.28 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 245
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.38 E-value=0.022 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.37 E-value=0.023 Score=54.86 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+|+|+|+.|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999987
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.34 E-value=0.032 Score=58.80 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=32.9
Q ss_pred ccchhhhHHHHHHHHhccC-CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 174 LVGLEEQINNLVSLLIREH-NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+.+.-.+++++.+...- .+....|.|+|++|+||||+|+.++.
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3556666777777765321 12456799999999999999999887
No 248
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.32 E-value=0.041 Score=57.05 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|..|+||||||+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999998877
No 249
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.14 E-value=0.019 Score=53.09 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=27.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
..++|+|..|+|||||++.+++.... ..+ .++++....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHH
Confidence 68999999999999999999984221 111 256665543
No 250
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.14 E-value=0.045 Score=56.53 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=35.5
Q ss_pred cccccccchhhhHHHHHHHHhccCC---------CCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 169 EQEINLVGLEEQINNLVSLLIREHN---------HNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..-.+++|.++.++++.+....-.. .-.+-|.|+|.+|+||||||+.+++.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 3346799998877776655432110 01123899999999999999999983
No 251
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.09 E-value=0.043 Score=52.81 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=63.7
Q ss_pred cccccceeEeecc-cccCCchhHHHHHHhhhhhhcccCCCceeeeEEEecCcccCC----CChHHhccccCCcEEeCCCC
Q 044931 544 WSWHLRSYVAFDT-RIQGSPAIEIYVFLDKMITAKSKRGGFVLLTVLDLEGVYKLK----LSDDVIGKLLNLRYLGLRST 618 (889)
Q Consensus 544 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~----l~~~~i~~l~~Lr~L~L~~~ 618 (889)
+-+.|++|++.++ .+...... .+...+ . .-..|+.|+|++|.+.. .....+..-..|++|+|++|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~--------~la~aL-~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIR--------SLIEAA-C-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHH--------HHHHHH-T-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHH--------HHHHHH-h-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3457788888764 44211111 122222 3 55678888888888762 12225556677888888888
Q ss_pred CCc-----ccccccCCCCCCcEEeecCCCc---c-----cCchhhhhccccccccccc
Q 044931 619 FID-----SLPKSVGILPRLETLDVKHTKL---R-----FLPDSIWKAKKLQHLYLNW 663 (889)
Q Consensus 619 ~i~-----~lp~~i~~L~~L~~L~L~~~~l---~-----~lp~~i~~L~~L~~L~l~~ 663 (889)
.|. .+-..+..-+.|+.|+|++|.. . .+-..+..=+.|+.|++..
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 776 2334555666788888876532 2 1223344445677776654
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.06 E-value=0.023 Score=53.93 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|+|+.|+||||+|+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 253
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.04 E-value=0.032 Score=57.49 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=33.6
Q ss_pred cccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.++.|.++.+++|.+.+... +-...+=+.|+|.+|.||||||+.++.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 356889998888887755321 001112399999999999999999998
No 254
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.95 E-value=0.055 Score=56.72 Aligned_cols=56 Identities=11% Similarity=0.210 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcccccc-ccCCceEEEEe
Q 044931 177 LEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDRVDVK-RHFAKRAWVRV 234 (889)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v 234 (889)
+...++.+.+++..........+.|+|.+|+|||+||..+++. .. ..-..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 3445556666666533212467899999999999999999984 33 22234555544
No 255
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.95 E-value=0.027 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 256
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.89 E-value=0.042 Score=59.62 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=36.5
Q ss_pred ccccchhhhHHHHHHHHhc----c-----------------------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIR----E-----------------------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~----~-----------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.++.++.|...+.. . .......|.++|.+|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 5689999999988887721 0 001235688999999999999999998
No 257
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.86 E-value=0.054 Score=56.78 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=30.9
Q ss_pred cchhhhHHHHHHHHhccC-CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 175 VGLEEQINNLVSLLIREH-NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 175 vGr~~~~~~l~~~L~~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|-...+..+...+.... ...+.+|+|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444554544444432 23677999999999999999999876
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.78 E-value=0.026 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|..|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 259
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.76 E-value=0.037 Score=53.93 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|+.|.||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 260
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.76 E-value=0.034 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.++.+.++|.+|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999999983
No 261
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.74 E-value=0.034 Score=56.57 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|..|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999877
No 262
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.73 E-value=0.061 Score=54.23 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 179 EQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+.++......... ...+|+|.|++|+||||+|+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 13 DLLNELKRRYACLSK-PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHTS-CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcEEEEECCCCCCHHHHHHHHHH
Confidence 334444444443332 567899999999999999999986
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.72 E-value=0.034 Score=53.16 Aligned_cols=23 Identities=13% Similarity=0.505 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-++++|+|..|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.70 E-value=0.034 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 265
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.68 E-value=0.098 Score=51.58 Aligned_cols=44 Identities=23% Similarity=0.123 Sum_probs=32.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDV 243 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 243 (889)
.-.++.|+|.+|+||||||..+.. . .-..++|++....++...+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~ 62 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERL 62 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHH
Confidence 446999999999999999999987 1 1236788887765555443
No 266
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.66 E-value=0.035 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.65 E-value=0.059 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.64 E-value=0.036 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 269
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.63 E-value=0.06 Score=59.80 Aligned_cols=48 Identities=31% Similarity=0.375 Sum_probs=35.8
Q ss_pred cccccchhhhHHHHHHHHhccC---------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIREH---------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|.++.++++.+.+..-. ....+-|.|+|.+|.|||+||+.+++
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3569999998877776654211 01234588999999999999999998
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.62 E-value=0.038 Score=53.86 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|+.|+||||||+.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999987
No 271
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.62 E-value=0.033 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 272
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.56 E-value=0.034 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 273
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.53 E-value=0.048 Score=55.46 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhccCC--CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 179 EQINNLVSLLIREHN--HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 179 ~~~~~l~~~L~~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+.+...+..... ....+|.|+|.+|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334444444443321 3567999999999999999999987
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.53 E-value=0.036 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.52 E-value=0.049 Score=65.21 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=39.4
Q ss_pred ccccccchhhhHHHHHHHHhcc----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 170 QEINLVGLEEQINNLVSLLIRE----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|.++.+++|.+++... .-.....|.|+|.+|+||||||+.+.+
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3467999999999998888641 012456799999999999999999988
No 276
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.51 E-value=0.091 Score=51.49 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.47 E-value=0.042 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.43 E-value=0.041 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=20.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 347999999999999999998664
No 279
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.38 E-value=0.035 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 280
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.37 E-value=0.045 Score=53.67 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.37 E-value=0.044 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999975
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.37 E-value=0.066 Score=53.18 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 179 EQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 24 ~~a~~~r~~~~~~---~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNKH---GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHT---TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555554432 5688999999999999999998874
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.35 E-value=0.043 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 284
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.34 E-value=0.04 Score=53.75 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 285
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.34 E-value=0.046 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.31 E-value=0.04 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 287
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.29 E-value=0.14 Score=51.27 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=33.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccc----cCCceEEEEeCCcccHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKR----HFAKRAWVRVRSEAKVRD 242 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~ 242 (889)
.-.++.|+|.+|+||||||+.+........ .-..++|++....++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~ 74 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 74 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH
Confidence 346999999999999999999887321111 124688988776544443
No 288
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.27 E-value=0.045 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 289
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.26 E-value=0.046 Score=55.85 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.24 E-value=0.043 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 291
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.23 E-value=0.036 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 292
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.23 E-value=0.046 Score=58.54 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=33.6
Q ss_pred ccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+++|.+..+..+...+.... ..-|.|+|.+|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~---~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG---IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG---GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC---CceEEEECCCCccHHHHHHHHHHh
Confidence 559999887666544444322 234889999999999999999873
No 293
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.21 E-value=0.051 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+|.|+|++|+||||+|+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999883
No 294
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.21 E-value=0.063 Score=58.77 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=37.4
Q ss_pred cccccchhhhHHHHHHHHhcc-----------CCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIRE-----------HNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+..++|.++.++.|...+... .....+-|.++|.+|+||||+|+.+..
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 367899999998887777432 001345689999999999999999988
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.19 E-value=0.045 Score=55.60 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999999987
No 296
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.16 E-value=0.067 Score=52.90 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 176 GLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.++..+.+.+.+... ..++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~---~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES---GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH---TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc---CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555555555433 5689999999999999999998874
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.14 E-value=0.041 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.13 E-value=0.049 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|+|..|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.11 E-value=0.054 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 300
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.01 E-value=0.13 Score=53.57 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHhccC-----CCCceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 178 EEQINNLVSLLIREH-----NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 178 ~~~~~~l~~~L~~~~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
..-.+.|.+.|.... .....+|+|+|.+|+||||++..++. .....-..+.++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEcc
Confidence 334455666664321 12568999999999999999999987 33322223455544
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.99 E-value=0.057 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|..|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 347999999999999999999987
No 302
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.98 E-value=0.054 Score=51.63 Aligned_cols=22 Identities=50% Similarity=0.797 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 303
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.97 E-value=0.044 Score=51.81 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 304
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.97 E-value=0.054 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|+|..|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
No 305
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.97 E-value=0.052 Score=53.33 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.97 E-value=0.055 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.96 E-value=0.054 Score=50.81 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 308
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.96 E-value=0.14 Score=53.70 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=27.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
..++|+|+|.+|+||||++..+.. .....=..++++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeC
Confidence 568999999999999999999887 33332223455544
No 309
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.91 E-value=0.055 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 310
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.85 E-value=0.086 Score=54.71 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=27.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.-+++.|+|++|+||||||.++... .-..++|+++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence 3467889999999999999999873 1224667777
No 311
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.84 E-value=0.048 Score=52.44 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.82 E-value=0.06 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.78 E-value=0.065 Score=52.71 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+||.|.|.+|+||||.|+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999999987
No 314
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.75 E-value=0.042 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=17.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.75 E-value=0.052 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.68 E-value=0.056 Score=53.77 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 317
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.68 E-value=0.14 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 318
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.68 E-value=0.12 Score=55.49 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 181 INNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 181 ~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+.+.+..... ...+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~-~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSG-NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCC-CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555544333 678999999999999999999876
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.65 E-value=0.061 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 320
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.62 E-value=0.087 Score=58.87 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=35.5
Q ss_pred cccccchhhhHHHHHHHHhc---cC------CCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 171 EINLVGLEEQINNLVSLLIR---EH------NHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~---~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-.+++|.++.+.++.+.... .. ..-.+-|.|+|.+|.||||||+.+++.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46799999887776665432 11 011234899999999999999999983
No 321
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.59 E-value=0.15 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.51 E-value=0.073 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 568999999999999999999887
No 323
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.50 E-value=0.061 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 324
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.50 E-value=0.15 Score=53.61 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+++|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 325
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.49 E-value=0.12 Score=53.79 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=28.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
...+++|+|..|+||||+++.++. ..+. -.+.+++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag--~l~~-~~g~V~l~g~d~ 138 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH--RLKN-EGTKVLMAAGDT 138 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH--HHHH-TTCCEEEECCCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHH-cCCeEEEEeecc
Confidence 457999999999999999999987 3332 234444443333
No 326
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.41 E-value=0.15 Score=60.07 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=39.5
Q ss_pred cccccccchhhhHHHHHHHHhc----cC------CCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 169 EQEINLVGLEEQINNLVSLLIR----EH------NHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~----~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.-.++.|.++.+++|.+++.- .+ ...++-|.++|.+|.|||+||+++++.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3446788999998888877632 11 134677999999999999999999993
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.41 E-value=0.064 Score=51.74 Aligned_cols=21 Identities=48% Similarity=0.771 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 328
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.41 E-value=0.07 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 329
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.37 E-value=0.062 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.683 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.++++|+|..|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.34 E-value=0.071 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
....|.|.|++|+||||+|+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 331
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.32 E-value=0.067 Score=51.50 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=61.2
Q ss_pred hhhhcccCCCceeeeEEEecCc-ccCC-----CChHHhccccCCcEEeCCCCCCc-----ccccccCCCCCCcEEeecCC
Q 044931 573 MITAKSKRGGFVLLTVLDLEGV-YKLK-----LSDDVIGKLLNLRYLGLRSTFID-----SLPKSVGILPRLETLDVKHT 641 (889)
Q Consensus 573 ~~~~~~~~~~l~~Lr~L~L~~~-~i~~-----l~~~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~ 641 (889)
.+..+. . .-+.|+.|+|+++ .+.. +-. .+..-.+|+.|+|++|.|. .+-..+..-+.|++|+|++|
T Consensus 32 ~l~~ll-~-~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 32 CINRLR-E-DDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHH-T-TCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHH-h-cCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 344444 4 6678999999986 6542 223 5667789999999999886 34455566788999999999
Q ss_pred Cccc-----Cchhhhhcccccccccccc
Q 044931 642 KLRF-----LPDSIWKAKKLQHLYLNWI 664 (889)
Q Consensus 642 ~l~~-----lp~~i~~L~~L~~L~l~~~ 664 (889)
.|.. +-..+..-+.|++|+++++
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8872 2333444455778877653
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.27 E-value=0.054 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
|.|.|+|..|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 333
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.27 E-value=0.17 Score=55.86 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=29.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
...+|+|+|..|+|||||++.+.. ..+. -.+.+++.....+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTF 332 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTT
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhh-cCCeEEEecCccc
Confidence 467999999999999999999987 3332 2345555443433
No 334
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.25 E-value=0.29 Score=52.04 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=39.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccc----cCCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKR----HFAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.-.++.|+|.+|+||||||..++....... .-..++|++....++..++.. +++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 457999999999999999999887422211 123688999888777665443 34443
No 335
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.21 E-value=0.21 Score=52.68 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=38.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccccc----CCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH----FAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.-.++.|+|.+|+||||||..+......... -..++|++....++..++.. +++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 4479999999999999999998763221111 23688999888777665543 34444
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.15 E-value=0.067 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
....|.|.|++|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 337
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.13 E-value=0.17 Score=53.83 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=28.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
...+|+|+|..|+||||+++.++. ..+.. .+.+.+...+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag--~l~~~-~G~V~l~g~D~ 195 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH--RLKNE-GTKVLMAAGDT 195 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH--HHHHT-TCCEEEECCCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh--hcccc-CCEEEEecccc
Confidence 467999999999999999999987 33322 34444443333
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.03 E-value=0.087 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 339
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.02 E-value=0.083 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|.+|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999987
No 340
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.01 E-value=0.11 Score=49.99 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=27.9
Q ss_pred hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 180 QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-+..+..++..-. ....+.|+|.+|.||||+|..+++.
T Consensus 44 f~~~l~~~~~~iP--kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGTP--KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTCT--TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--cccEEEEECCCCCCHHHHHHHHHHH
Confidence 3556666665321 3357999999999999999998873
No 341
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.01 E-value=0.081 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 347999999999999999999987
No 342
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.00 E-value=0.21 Score=49.50 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=29.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccc---c-cCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVK---R-HFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~ 237 (889)
.-.+++|+|..|+|||||++.+....... . .-...+|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 34799999999999999999997521111 1 1234778766543
No 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.99 E-value=0.093 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999876
No 344
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.96 E-value=0.15 Score=54.15 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=34.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
.-+++.|+|.+|+||||||.++... ....=..++|++....++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH
Confidence 4579999999999999999999873 32222357899887766653
No 345
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.95 E-value=0.22 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+.+|.|+|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 346
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.93 E-value=0.087 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999973
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.90 E-value=0.077 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|..|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 348
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.89 E-value=0.14 Score=56.19 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=34.0
Q ss_pred HHHHHHHHhccC------CCCceEEEEECCCCCcHHHHHHHHhcccccccc-CCceEEEEeC
Q 044931 181 INNLVSLLIREH------NHNSQVIAIVGEAGSGKTTLTRSVYDRVDVKRH-FAKRAWVRVR 235 (889)
Q Consensus 181 ~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v~ 235 (889)
.+++.++|.... ....++|.|+|.||+||||+|..+... .... =..++-|+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 445555554321 125789999999999999999998873 3332 1234555544
No 349
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.84 E-value=0.095 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.80 E-value=0.099 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 351
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.79 E-value=0.095 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 352
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.77 E-value=0.096 Score=50.53 Aligned_cols=24 Identities=13% Similarity=0.569 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|+|+|..|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 347899999999999999999986
No 353
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.75 E-value=0.11 Score=59.99 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=37.3
Q ss_pred cccccchhhhHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHH
T ss_pred cceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhc
Confidence 367999999988888877754 4699999999999999999988
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.74 E-value=0.075 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
....|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 355
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.73 E-value=0.29 Score=51.42 Aligned_cols=52 Identities=8% Similarity=0.108 Sum_probs=37.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQ 250 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 250 (889)
.-.++.|.|.+|+||||||..+..+...+. ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 447899999999999999999876422222 568888765 3555666666544
No 356
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.72 E-value=0.11 Score=48.17 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999987
No 357
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.70 E-value=0.087 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|+|+|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 358
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.68 E-value=0.13 Score=54.80 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=33.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV 240 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 240 (889)
.-+++.|+|.+|+||||||.++... ....=..++|++....++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccH
Confidence 4479999999999999999998873 3222236889998777664
No 359
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.66 E-value=0.077 Score=53.58 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 360
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.65 E-value=0.1 Score=49.60 Aligned_cols=24 Identities=25% Similarity=0.453 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|+.|+||||+|+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 361
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.60 E-value=0.15 Score=53.41 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=30.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCccc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAK 239 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 239 (889)
..++|+|+|-||+||||+|..+... ....=..++-|+.....+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCC
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 5789999999999999999988773 322212466676655433
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.56 E-value=0.16 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999987
No 363
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.56 E-value=0.089 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 364
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.47 E-value=0.092 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.+++|+|..|+|||||++.+...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999999873
No 365
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.45 E-value=0.13 Score=54.72 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=33.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKV 240 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 240 (889)
.-+++.|+|.+|+||||||.++... ....=..++|++....++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCH
Confidence 4579999999999999999998863 3222246889988876654
No 366
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.41 E-value=0.24 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887
No 367
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.38 E-value=0.23 Score=51.64 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=28.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCC-ceEEEEeCC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA-KRAWVRVRS 236 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~ 236 (889)
.-.+++|+|.+|+|||||++.+... ....-. .++|+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC
Confidence 3469999999999999999998873 322223 466776543
No 368
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.35 E-value=0.23 Score=52.39 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=39.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccc---------cC-----CceEEEEeCCcccHHHHHHHHHHHh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKR---------HF-----AKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++..++.. +++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHc
Confidence 457999999999999999999876322211 11 3688999888877766553 34444
No 369
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.34 E-value=0.099 Score=51.51 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 370
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.27 E-value=0.21 Score=51.84 Aligned_cols=38 Identities=32% Similarity=0.283 Sum_probs=27.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeC
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVR 235 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 235 (889)
.++|+|+|.+|+||||++..+... ....=..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 679999999999999999998873 33222245566553
No 371
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.25 E-value=0.22 Score=49.54 Aligned_cols=25 Identities=48% Similarity=0.684 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+|+|.|..|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999883
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.20 E-value=0.052 Score=53.45 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|+|.|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999977
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.16 E-value=0.14 Score=50.82 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=27.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
-.+++|+|.+|+|||||++.+... ....=..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc
Confidence 368999999999999999999863 222223466765543
No 374
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.13 Score=49.31 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
....|+|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998874
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.13 E-value=0.11 Score=51.27 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 376
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.01 E-value=0.12 Score=52.25 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=27.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVR 235 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 235 (889)
.-.+++|+|..|+|||||++.+...-.. ..-...+|+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 3479999999999999999998842111 122345666543
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.98 E-value=0.13 Score=50.78 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 447999999999999999999987
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.92 E-value=0.07 Score=50.38 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999876
No 379
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.91 E-value=0.13 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
. .+++|+|..|+|||||.+.+..
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 6 8999999999999999999987
No 380
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.86 E-value=0.15 Score=55.96 Aligned_cols=25 Identities=40% Similarity=0.503 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..++|+|+|.+|+||||+|..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998873
No 381
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.86 E-value=0.14 Score=52.12 Aligned_cols=24 Identities=50% Similarity=0.634 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 382
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.85 E-value=0.12 Score=58.78 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=36.6
Q ss_pred cccccchhhhHHHHHHHHhccC---CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 171 EINLVGLEEQINNLVSLLIREH---NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+++|.++..+.+.+.+.-.. .....++.|+|.+|+||||||+.++.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4568998888887766554221 11356899999999999999999987
No 383
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.83 E-value=0.17 Score=50.63 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=26.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|+|||||.+.+.. ......+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G---l~~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC---LDKPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc---CCCCCceEEEE
Confidence 346899999999999999999987 22223455555
No 384
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.82 E-value=0.12 Score=50.45 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|+|.|..|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 385
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.80 E-value=0.13 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 386
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.62 E-value=0.17 Score=50.76 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=29.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.-.++.|.|.+|+||||||..+... ....=..++|++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 3468999999999999999887663 2222236778876543
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.60 E-value=0.14 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
....|.|.|+.|+||||+|+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.55 E-value=0.13 Score=53.97 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|.|..|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.51 E-value=0.18 Score=51.24 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=26.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|+|||||.+.+..- .....+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl---~~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL---EKPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 3469999999999999999999872 2223355554
No 390
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.50 E-value=0.18 Score=60.33 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=38.0
Q ss_pred ccccchhhhHHHHHHHHhccCC------CCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREHN------HNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~------~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.++.++.+...+..... .....+.++|.+|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 5689999999998888764321 1334799999999999999999988
No 391
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.49 E-value=0.19 Score=51.52 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999987
No 392
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.49 E-value=0.26 Score=52.86 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=26.5
Q ss_pred HHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 182 NNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 182 ~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+.+.+...-. ..++++|+|..|.|||||++.+..
T Consensus 156 ~~~l~~~~~~i~-~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIP-KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCT-TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccC-CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433322 457999999999999999999987
No 393
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.48 E-value=0.21 Score=50.89 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=26.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|.|||||++.+.. ......+.+++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G---l~~p~~G~I~~ 70 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG---YLSPSHGECHL 70 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS---SSCCSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc---CCCCCCcEEEE
Confidence 346899999999999999999987 22223455555
No 394
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.46 E-value=0.4 Score=51.93 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=36.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccc----cCCceEEEEeCCcccHHHHHHHHHHHhh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKR----HFAKRAWVRVRSEAKVRDVLIDILQQIN 252 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 252 (889)
.-.++.|+|.+|+|||||+..++-...... .-..++|++....++...+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 447999999999999999997653111111 2235889987766555433 33455443
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.45 E-value=0.24 Score=52.82 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=31.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccC---C-ceEEEEeCCcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHF---A-KRAWVRVRSEA 238 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~-~~~wv~v~~~~ 238 (889)
.-.++.|+|..|+|||||+..+.......... . .++|++....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 45899999999999999999988732111111 2 35898876654
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.45 E-value=0.14 Score=50.82 Aligned_cols=23 Identities=39% Similarity=0.679 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 397
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.39 E-value=0.14 Score=50.79 Aligned_cols=21 Identities=48% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 398
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.36 E-value=0.18 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.++.|+|.+|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 37999999999999999999876
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.28 E-value=0.13 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.24 E-value=0.23 Score=49.97 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=26.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|.|||||.+.+..- .....+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 61 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF---YQPTAGEITI 61 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS---SCCSBSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 3479999999999999999999872 2233455554
No 401
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.23 E-value=0.23 Score=51.57 Aligned_cols=37 Identities=27% Similarity=0.208 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.++++|+|.+|+||||++..++.- ....=..+.++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecC
Confidence 378999999999999999999873 3322223455544
No 402
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.22 E-value=0.14 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 403
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.20 E-value=0.1 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=16.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHh-c
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVY-D 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~-~ 218 (889)
-.+++|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 404
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.18 E-value=0.21 Score=51.77 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=28.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
.++|+|.|-||+||||+|..+... ....=..++-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 478999999999999999988773 3222124556666544
No 405
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.16 E-value=0.21 Score=51.07 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=27.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSE 237 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 237 (889)
++|+|.|-||+||||+|..+... ....=..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 68888999999999999988773 3222124666666543
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.10 E-value=0.14 Score=50.42 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 407
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.99 E-value=0.16 Score=48.51 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 408
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.98 E-value=0.16 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.97 E-value=0.16 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999977
No 410
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.96 E-value=0.13 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 411
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.95 E-value=0.22 Score=50.18 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=25.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
-.+++|+|..|.|||||.+.+..- .....+.+++
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~p~~G~I~i 68 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF---YIPENGQVLI 68 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 368999999999999999999872 2223455555
No 412
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.91 E-value=0.17 Score=50.57 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 413
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.87 E-value=0.29 Score=47.51 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=29.4
Q ss_pred eEEEEE-CCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 197 QVIAIV-GEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 197 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
++|+|+ +-||+||||+|..+... ....=..++-|+.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCHH
Confidence 688898 57999999999998773 33222246667766554443
No 414
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.86 E-value=0.2 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.|+|+.|+||||||..+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999998
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.86 E-value=0.17 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 416
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.80 E-value=0.2 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 417
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.79 E-value=0.18 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999999999999873
No 418
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.78 E-value=0.23 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=26.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|+|||||.+.++.- .....+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl---~~p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL---IKPSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 3469999999999999999999872 2223355554
No 419
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.77 E-value=0.15 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 420
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.70 E-value=0.5 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-..|.|.|..|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 421
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.70 E-value=0.23 Score=50.78 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=26.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|+|||||.+.+..- .....+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl---~~p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL---YQPTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC---CCCCCCEEEE
Confidence 4469999999999999999999872 2223455555
No 422
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.65 E-value=0.17 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 447999999999999999999987
No 423
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.62 E-value=0.18 Score=49.23 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
+|.|.|.+|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 424
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.62 E-value=0.23 Score=53.14 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=34.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
.-+++.|+|.+|+||||||..+... ....-..++|++....++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH
Confidence 4468999999999999999998773 32222468999988776643
No 425
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.58 E-value=0.18 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 426
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.57 E-value=0.18 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 427
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.50 E-value=0.19 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999997
No 428
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.49 E-value=0.17 Score=48.68 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999998874
No 429
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.49 E-value=0.21 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+-|+|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998874
No 430
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.48 E-value=0.31 Score=47.82 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=25.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
.|.+.|.||+||||+|..+.... ....++ +.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCC
Confidence 47788999999999998888732 223333 44455543
No 431
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.47 E-value=0.32 Score=54.30 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=20.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 432
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.44 E-value=0.18 Score=51.16 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 433
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.40 E-value=0.41 Score=46.76 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=28.6
Q ss_pred EEEEE-CCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 198 VIAIV-GEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 198 vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
+|+|+ +-||+||||+|..+... ....- .++-|+.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCCCCCHH
Confidence 67775 67999999999998873 33332 67777776654443
No 434
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.37 E-value=0.25 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999987
No 435
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.23 E-value=0.32 Score=50.21 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=36.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccC--CceEEEEeCCcccHHHHHHHHHHHhhhh
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHF--AKRAWVRVRSEAKVRDVLIDILQQINDE 254 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 254 (889)
++-|+|.+|+||||||.++... ....+ ..++||+....++.. .+++++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd 81 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVD 81 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCC
Confidence 7899999999999999988773 33332 358899988877753 25666543
No 436
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.17 E-value=0.2 Score=51.07 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||.+.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999999998
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.07 E-value=0.2 Score=50.91 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=26.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEE
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWV 232 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 232 (889)
.-.+++|+|..|+|||||.+.+.. -.. . .+.+++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G--l~~-~-~G~I~i 78 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR--FYD-A-EGDIKI 78 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT--SSC-C-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc--cCC-C-CeEEEE
Confidence 346999999999999999999987 232 2 455554
No 438
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.03 E-value=0.54 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 668999999999999999999875
No 439
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.99 E-value=0.21 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999987
No 440
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.98 E-value=0.19 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 441
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.90 E-value=0.31 Score=49.51 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 347999999999999999999876
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.84 E-value=0.24 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.++|.|.|..|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.79 E-value=0.12 Score=53.46 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=18.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999887
No 444
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.77 E-value=0.2 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 445
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.73 E-value=0.22 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 446
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.71 E-value=0.4 Score=48.34 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=29.5
Q ss_pred hHHHHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 180 QINNLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-...+..||..... ...-|.++|.+|.|||.+|.++.+
T Consensus 89 ~~~~l~~~l~~~~~-~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 89 AASVFLGWATKKFG-KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHHTTCST-TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CCcEEEEECCCCCCHHHHHHHHHh
Confidence 34557777776522 345799999999999999999987
No 447
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.70 E-value=0.27 Score=53.34 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=26.1
Q ss_pred HHHHHHhccCCCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 183 NLVSLLIREHNHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 183 ~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
++.+.|..... ...+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~-~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDS-SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHH-CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhccc-CCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444443322 456999999999999999999987
No 448
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.65 E-value=0.22 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|.|||||.+.+..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999987
No 449
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.65 E-value=0.33 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 450
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.55 E-value=0.27 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.52 E-value=0.24 Score=49.76 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...|+|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 452
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.51 E-value=0.32 Score=58.85 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=38.1
Q ss_pred ccccchhhhHHHHHHHHhccC------CCCceEEEEECCCCCcHHHHHHHHhc
Q 044931 172 INLVGLEEQINNLVSLLIREH------NHNSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.+..++.+...+.... ......+.|+|..|+|||++|+.+.+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999888886532 11235899999999999999999988
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.48 E-value=0.59 Score=46.01 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
....|.|.|..|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999984
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.44 E-value=0.28 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.|+|..|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 455
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.41 E-value=0.43 Score=47.19 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=18.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-..|.|.|..|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999883
No 456
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.35 E-value=0.5 Score=50.16 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=31.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcccccc--ccCCceEEEEeCCcccHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVK--RHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~~~ 241 (889)
..+++.+.|.||+||||+|..+.. ... ..=..++-|+.....+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCChH
Confidence 468999999999999999998876 333 222246667666544443
No 457
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.33 E-value=0.22 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999764
No 458
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.29 E-value=0.25 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998764
No 459
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.25 E-value=0.24 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998874
No 460
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.25 E-value=0.33 Score=46.06 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 461
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.23 E-value=0.23 Score=47.43 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999764
No 462
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.23 E-value=0.56 Score=49.48 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=31.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
..+++.+.|-||+||||+|..+.. .....=..++-|+.....+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCChh
Confidence 457888899999999999998876 333322346667766554443
No 463
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.17 E-value=0.74 Score=48.46 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=36.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHHHHHh
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDILQQI 251 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 251 (889)
.-.++.|.|.+|+||||+|..++.+... .=..++|++.. .+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 3468999999999999999998874322 21356777664 35566666665543
No 464
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.09 E-value=0.28 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 447899999999999999999987
No 465
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.07 E-value=0.67 Score=44.74 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=30.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHHHHHHHH
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVRDVLIDI 247 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 247 (889)
.|+|-|.-|+||||.++.+++ ..+..-..+++..-.......+.++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~ 49 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKI 49 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHH
Confidence 478899999999999999988 444433344444443333333444443
No 466
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.02 E-value=0.4 Score=52.19 Aligned_cols=37 Identities=27% Similarity=0.208 Sum_probs=26.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEe
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRV 234 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 234 (889)
.++|+|+|.+|+||||++..+... ....=..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeec
Confidence 479999999999999999998873 3332223445544
No 467
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.01 E-value=0.49 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+++|+|.+|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999975
No 468
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.98 E-value=0.61 Score=46.38 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEE
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVR 233 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 233 (889)
...|.|.|..|+||||+++.+.+... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999988422 23344344443
No 469
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.91 E-value=0.4 Score=51.65 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=30.7
Q ss_pred CCceEEEEEC-CCCCcHHHHHHHHhccccccccCCceEEEEeCCcc
Q 044931 194 HNSQVIAIVG-EAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEA 238 (889)
Q Consensus 194 ~~~~vi~I~G-~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 238 (889)
...++|+|+| -||+||||+|..+.. .....=..++-|+.....
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~--~La~~g~rVlliD~D~~~ 184 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI--AHANMGKKVFYLNIEQCG 184 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH--HHHHHTCCEEEEECCTTC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEECCCCC
Confidence 3679999987 899999999998877 333322356777776433
No 470
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.89 E-value=0.17 Score=58.25 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=34.2
Q ss_pred ccccchhhhHHHHHHHHhccCC--------CCceEEEEECCCCCcHHHHHHHHhcc
Q 044931 172 INLVGLEEQINNLVSLLIREHN--------HNSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
+.++|.+..+..+.-.|..+.. .+-.-|.++|.+|+|||+||+.+.+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 5688888877766555554421 00115889999999999999999873
No 471
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.75 E-value=0.29 Score=45.62 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999864
No 472
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.62 E-value=0.3 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999764
No 473
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.59 E-value=0.35 Score=48.58 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=28.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCC
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRS 236 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 236 (889)
.-.++.|.|.+|+||||+|.+++.+ .....-..+++++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC
Confidence 3468999999999999999886542 2222234566776654
No 474
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.58 E-value=0.4 Score=48.19 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=28.1
Q ss_pred EEEECCCCCcHHHHHHHHhccccccccCCceEEEEeCCcccHH
Q 044931 199 IAIVGEAGSGKTTLTRSVYDRVDVKRHFAKRAWVRVRSEAKVR 241 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 241 (889)
|+|.|-||+||||+|..+... ....=..++-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~--la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKI--MASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHH--HTTTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCcChH
Confidence 677999999999999998873 32221346667665544443
No 475
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.56 E-value=0.29 Score=49.70 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 476
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.55 E-value=0.29 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-|+|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.49 E-value=0.27 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.44 E-value=0.31 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
-+.|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999987
No 479
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.43 E-value=0.35 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998864
No 480
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.37 E-value=0.73 Score=45.06 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..|.|.|..|+||||+++.+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 481
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.35 E-value=0.29 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998764
No 482
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.33 E-value=0.26 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 483
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.30 E-value=0.3 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||...+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999887664
No 484
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.24 E-value=0.23 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
....|+|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 485
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.08 E-value=0.32 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998775
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.07 E-value=0.28 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Q 044931 196 SQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 196 ~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998774
No 487
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.95 E-value=0.32 Score=46.41 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||...+.++
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45889999999999999888764
No 488
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.93 E-value=0.32 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998764
No 489
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.92 E-value=0.32 Score=44.97 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988764
No 490
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.88 E-value=0.33 Score=45.75 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
..--|+|+|.+|+|||||...+.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999999875
No 491
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.79 E-value=0.36 Score=54.44 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 492
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.76 E-value=0.37 Score=47.21 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHhcc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
....|.|+|.+|+|||||+..+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998874
No 493
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.75 E-value=1 Score=43.64 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=23.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhccccccccCC
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDRVDVKRHFA 227 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 227 (889)
+.|+|-|.-|+||||+++.+.+ .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 5789999999999999999988 4444443
No 494
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=86.72 E-value=0.45 Score=45.93 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
.-|+|+|.+|+|||||...+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999863
No 495
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.71 E-value=0.33 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
..++|.|++|+||||+|+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.70 E-value=0.33 Score=44.89 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcc
Q 044931 199 IAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 199 i~I~G~gGiGKTtLA~~v~~~ 219 (889)
|+|+|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998763
No 497
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.69 E-value=0.37 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYDR 219 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~~ 219 (889)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.68 E-value=0.31 Score=47.94 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 044931 197 QVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 197 ~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 499
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.62 E-value=0.29 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCcHHHHHHHHhc
Q 044931 195 NSQVIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 195 ~~~vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.-.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 447999999999999999999986
No 500
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.61 E-value=0.32 Score=49.64 Aligned_cols=21 Identities=38% Similarity=0.770 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 044931 198 VIAIVGEAGSGKTTLTRSVYD 218 (889)
Q Consensus 198 vi~I~G~gGiGKTtLA~~v~~ 218 (889)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
Done!