Query 044932
Match_columns 689
No_of_seqs 504 out of 2442
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 7E-165 1E-169 1337.0 30.7 481 196-684 1-506 (506)
2 PF03141 Methyltransf_29: Puta 99.9 5.8E-24 1.3E-28 233.7 10.5 205 225-450 294-506 (506)
3 COG2226 UbiE Methylase involve 99.7 6.4E-17 1.4E-21 165.8 13.2 138 308-451 51-238 (238)
4 PLN02336 phosphoethanolamine N 99.7 2.8E-16 6E-21 173.1 10.7 300 309-649 38-369 (475)
5 PF01209 Ubie_methyltran: ubiE 99.6 5.1E-16 1.1E-20 158.2 7.6 97 308-410 47-153 (233)
6 PF08241 Methyltransf_11: Meth 99.6 1.1E-15 2.3E-20 128.9 7.5 90 313-408 1-95 (95)
7 PLN02233 ubiquinone biosynthes 99.6 8.8E-15 1.9E-19 150.7 14.3 136 308-449 73-260 (261)
8 TIGR02752 MenG_heptapren 2-hep 99.5 1.2E-12 2.7E-17 130.2 16.4 136 309-450 46-231 (231)
9 PRK10258 biotin biosynthesis p 99.5 2.3E-13 4.9E-18 137.7 10.4 99 308-412 42-142 (251)
10 PRK05785 hypothetical protein; 99.5 7.1E-13 1.5E-17 134.1 13.9 133 309-451 52-225 (226)
11 PRK14103 trans-aconitate 2-met 99.4 5.9E-13 1.3E-17 135.6 10.2 96 308-412 29-128 (255)
12 PLN02244 tocopherol O-methyltr 99.4 1.3E-12 2.7E-17 139.7 13.1 102 308-411 118-224 (340)
13 PTZ00098 phosphoethanolamine N 99.4 1.6E-12 3.5E-17 134.2 12.9 99 308-411 52-157 (263)
14 PF13489 Methyltransf_23: Meth 99.4 6.1E-13 1.3E-17 123.0 8.3 129 292-434 9-160 (161)
15 KOG1540 Ubiquinone biosynthesi 99.4 2.7E-12 5.9E-17 132.5 12.5 97 308-410 100-214 (296)
16 PRK11088 rrmA 23S rRNA methylt 99.4 2.7E-12 5.8E-17 132.5 10.6 92 309-413 86-184 (272)
17 PLN02396 hexaprenyldihydroxybe 99.4 2.8E-12 6.1E-17 136.9 11.1 98 309-412 132-237 (322)
18 PRK11036 putative S-adenosyl-L 99.3 9.5E-12 2.1E-16 127.0 12.7 97 308-410 44-149 (255)
19 PRK01683 trans-aconitate 2-met 99.3 2E-11 4.4E-16 123.9 13.9 118 308-432 31-153 (258)
20 TIGR00477 tehB tellurite resis 99.3 1.3E-11 2.8E-16 121.9 12.0 124 309-436 31-168 (195)
21 PRK11207 tellurite resistance 99.3 1.8E-11 3.8E-16 121.1 12.7 122 309-435 31-168 (197)
22 PLN02336 phosphoethanolamine N 99.3 3.3E-11 7.1E-16 133.1 15.1 98 308-411 266-370 (475)
23 PRK15068 tRNA mo(5)U34 methylt 99.3 1.4E-11 3E-16 131.2 10.5 109 294-410 112-226 (322)
24 PRK00107 gidB 16S rRNA methylt 99.3 1E-10 2.3E-15 116.0 15.5 132 309-450 46-186 (187)
25 PF13847 Methyltransf_31: Meth 99.2 3.7E-11 8E-16 113.0 10.6 98 308-412 3-112 (152)
26 PRK08317 hypothetical protein; 99.2 6.2E-11 1.4E-15 116.1 12.6 111 291-411 6-125 (241)
27 PF12847 Methyltransf_18: Meth 99.2 3E-11 6.5E-16 106.4 8.9 96 309-410 2-111 (112)
28 TIGR02072 BioC biotin biosynth 99.2 6.1E-11 1.3E-15 116.6 11.8 98 309-412 35-137 (240)
29 COG2227 UbiG 2-polyprenyl-3-me 99.2 2.1E-11 4.5E-16 125.2 8.6 106 308-415 59-166 (243)
30 TIGR00452 methyltransferase, p 99.2 7E-11 1.5E-15 125.9 12.8 124 308-435 121-271 (314)
31 PLN02490 MPBQ/MSBQ methyltrans 99.2 7.1E-11 1.5E-15 127.1 12.6 122 308-435 113-254 (340)
32 PRK12335 tellurite resistance 99.2 1.2E-10 2.5E-15 121.6 11.8 122 310-435 122-257 (287)
33 PRK00216 ubiE ubiquinone/menaq 99.2 4.7E-10 1E-14 110.7 15.1 137 309-451 52-239 (239)
34 PF13649 Methyltransf_25: Meth 99.2 1.7E-11 3.8E-16 107.7 4.4 88 312-404 1-101 (101)
35 PRK11873 arsM arsenite S-adeno 99.2 8.8E-11 1.9E-15 120.5 9.9 98 308-411 77-184 (272)
36 smart00138 MeTrc Methyltransfe 99.2 1.2E-10 2.5E-15 120.8 9.9 100 308-412 99-244 (264)
37 TIGR00138 gidB 16S rRNA methyl 99.1 6.3E-10 1.4E-14 109.5 14.2 123 309-438 43-170 (181)
38 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 5E-10 1.1E-14 109.4 13.4 97 308-410 39-143 (223)
39 TIGR03587 Pse_Me-ase pseudamin 99.1 2.7E-10 5.8E-15 114.0 11.0 108 292-410 30-142 (204)
40 TIGR00740 methyltransferase, p 99.1 1.8E-10 3.8E-15 116.3 9.7 97 308-412 53-163 (239)
41 smart00828 PKS_MT Methyltransf 99.1 3.9E-10 8.4E-15 111.9 12.0 118 311-435 2-142 (224)
42 KOG4300 Predicted methyltransf 99.1 1.2E-10 2.6E-15 117.6 8.3 125 285-412 53-184 (252)
43 PF07021 MetW: Methionine bios 99.1 1.7E-10 3.7E-15 115.3 9.0 103 294-412 5-111 (193)
44 PRK06922 hypothetical protein; 99.1 2.3E-10 5E-15 131.3 10.3 98 309-411 419-538 (677)
45 PF08003 Methyltransf_9: Prote 99.1 5.2E-10 1.1E-14 118.6 12.0 142 283-434 96-264 (315)
46 PRK15451 tRNA cmo(5)U34 methyl 99.1 3.7E-10 8E-15 115.3 10.4 96 308-411 56-165 (247)
47 PRK00121 trmB tRNA (guanine-N( 99.1 5.4E-10 1.2E-14 111.1 10.4 117 309-433 41-177 (202)
48 PF05148 Methyltransf_8: Hypot 99.1 1.2E-09 2.5E-14 110.8 12.8 126 309-452 73-199 (219)
49 PF08242 Methyltransf_12: Meth 99.1 5.6E-11 1.2E-15 103.5 3.0 92 313-406 1-99 (99)
50 PF02353 CMAS: Mycolic acid cy 99.1 1.3E-09 2.7E-14 114.2 12.9 122 277-410 35-166 (273)
51 PF05401 NodS: Nodulation prot 99.0 4.2E-09 9E-14 105.9 14.1 140 308-453 43-199 (201)
52 PRK00517 prmA ribosomal protei 99.0 9.1E-09 2E-13 105.4 16.8 124 308-450 119-249 (250)
53 TIGR00537 hemK_rel_arch HemK-r 99.0 6.5E-09 1.4E-13 100.6 14.8 120 309-437 20-165 (179)
54 TIGR02021 BchM-ChlM magnesium 99.0 4.8E-09 1E-13 104.5 13.9 121 308-436 55-205 (219)
55 TIGR02081 metW methionine bios 99.0 3.4E-09 7.4E-14 104.0 12.6 88 309-403 14-105 (194)
56 PRK08287 cobalt-precorrin-6Y C 99.0 7.6E-09 1.6E-13 100.8 14.6 113 309-434 32-153 (187)
57 COG4976 Predicted methyltransf 99.0 4.7E-10 1E-14 114.9 6.1 135 296-437 114-265 (287)
58 PRK11705 cyclopropane fatty ac 99.0 2.1E-09 4.5E-14 117.3 11.7 109 291-411 154-268 (383)
59 PRK06202 hypothetical protein; 99.0 1.2E-09 2.7E-14 109.8 9.1 96 308-411 60-167 (232)
60 TIGR00406 prmA ribosomal prote 99.0 5.3E-09 1.1E-13 109.6 14.1 114 309-434 160-280 (288)
61 PRK11188 rrmJ 23S rRNA methylt 99.0 2.4E-09 5.2E-14 107.5 11.0 92 309-412 52-167 (209)
62 KOG3045 Predicted RNA methylas 99.0 3.5E-09 7.7E-14 110.0 11.7 125 309-452 181-305 (325)
63 TIGR00091 tRNA (guanine-N(7)-) 99.0 2.5E-09 5.5E-14 105.5 10.2 122 309-433 17-154 (194)
64 PF03848 TehB: Tellurite resis 99.0 2.6E-09 5.6E-14 107.0 10.2 125 309-437 31-169 (192)
65 KOG3010 Methyltransferase [Gen 98.9 2.4E-09 5.2E-14 110.2 8.8 114 309-431 34-158 (261)
66 PRK04266 fibrillarin; Provisio 98.9 2.1E-08 4.6E-13 102.3 15.1 122 309-437 73-210 (226)
67 TIGR03534 RF_mod_PrmC protein- 98.9 2.5E-08 5.4E-13 100.0 14.9 118 309-435 88-239 (251)
68 COG2264 PrmA Ribosomal protein 98.9 2.1E-08 4.5E-13 106.5 14.6 123 308-437 162-288 (300)
69 PF06325 PrmA: Ribosomal prote 98.9 1.9E-08 4E-13 106.8 14.1 130 309-450 162-294 (295)
70 TIGR02469 CbiT precorrin-6Y C5 98.9 1E-08 2.2E-13 91.1 10.1 93 309-410 20-122 (124)
71 TIGR03840 TMPT_Se_Te thiopurin 98.9 1E-08 2.2E-13 103.7 11.1 96 309-409 35-151 (213)
72 PRK05134 bifunctional 3-demeth 98.9 2.7E-08 5.9E-13 99.6 14.0 97 309-411 49-152 (233)
73 PRK07580 Mg-protoporphyrin IX 98.9 2.9E-08 6.4E-13 98.4 13.6 93 308-408 63-164 (230)
74 PRK14121 tRNA (guanine-N(7)-)- 98.9 8.4E-09 1.8E-13 113.0 10.4 103 309-413 123-238 (390)
75 PLN02585 magnesium protoporphy 98.9 2.9E-08 6.3E-13 106.1 13.9 91 309-408 145-248 (315)
76 KOG1541 Predicted protein carb 98.9 8.5E-09 1.9E-13 105.2 9.3 116 308-430 50-180 (270)
77 TIGR01983 UbiG ubiquinone bios 98.9 2.7E-08 5.9E-13 98.5 12.7 97 309-411 46-150 (224)
78 KOG1270 Methyltransferases [Co 98.8 3.7E-09 8.1E-14 110.0 6.5 95 309-412 90-197 (282)
79 PRK14968 putative methyltransf 98.8 7E-08 1.5E-12 92.3 14.9 119 309-435 24-171 (188)
80 PLN03075 nicotianamine synthas 98.8 1.8E-08 3.9E-13 107.0 11.6 142 308-453 123-277 (296)
81 COG2230 Cfa Cyclopropane fatty 98.8 1.4E-08 3.1E-13 107.0 10.5 127 275-411 43-177 (283)
82 COG4106 Tam Trans-aconitate me 98.8 1.1E-08 2.4E-13 104.2 9.0 118 308-432 30-152 (257)
83 PLN02232 ubiquinone biosynthes 98.8 1.2E-08 2.6E-13 98.1 8.6 110 333-448 2-158 (160)
84 PRK13944 protein-L-isoaspartat 98.8 2.6E-08 5.7E-13 99.2 11.3 91 309-411 73-174 (205)
85 TIGR01177 conserved hypothetic 98.8 1.6E-08 3.5E-13 107.6 9.8 121 308-435 182-313 (329)
86 PTZ00146 fibrillarin; Provisio 98.8 3.1E-08 6.8E-13 104.9 10.2 122 308-436 132-270 (293)
87 PRK14967 putative methyltransf 98.8 9E-08 1.9E-12 96.2 12.9 115 309-432 37-179 (223)
88 PRK13255 thiopurine S-methyltr 98.8 4.4E-08 9.6E-13 99.4 10.7 95 309-408 38-153 (218)
89 TIGR02716 C20_methyl_CrtF C-20 98.7 4E-08 8.7E-13 103.0 10.1 96 308-411 149-255 (306)
90 PRK13942 protein-L-isoaspartat 98.7 4.8E-08 1E-12 98.1 9.9 91 308-410 76-176 (212)
91 TIGR03438 probable methyltrans 98.7 6.8E-08 1.5E-12 101.9 10.7 97 309-410 64-177 (301)
92 PRK00377 cbiT cobalt-precorrin 98.7 2.2E-07 4.9E-12 91.8 13.7 113 308-431 40-164 (198)
93 TIGR00080 pimt protein-L-isoas 98.7 1.5E-07 3.3E-12 94.1 11.7 91 308-410 77-177 (215)
94 TIGR00438 rrmJ cell division p 98.7 1.2E-07 2.5E-12 92.8 10.2 92 309-411 33-147 (188)
95 PRK14966 unknown domain/N5-glu 98.7 7.2E-07 1.6E-11 98.8 17.3 133 310-450 253-418 (423)
96 cd02440 AdoMet_MTases S-adenos 98.7 1.1E-07 2.4E-12 78.6 8.3 94 311-409 1-103 (107)
97 PRK09328 N5-glutamine S-adenos 98.6 3.9E-07 8.5E-12 93.1 14.0 118 309-435 109-260 (275)
98 PRK09489 rsmC 16S ribosomal RN 98.6 1.8E-07 3.9E-12 100.9 11.5 95 310-412 198-305 (342)
99 PF05175 MTS: Methyltransferas 98.6 5.4E-07 1.2E-11 87.3 13.6 97 309-412 32-142 (170)
100 PF13659 Methyltransf_26: Meth 98.6 6.4E-08 1.4E-12 86.1 5.7 97 310-411 2-116 (117)
101 TIGR00536 hemK_fam HemK family 98.6 1E-06 2.2E-11 92.1 14.2 131 310-449 116-281 (284)
102 PRK07402 precorrin-6B methylas 98.5 2.3E-06 4.9E-11 84.3 15.2 95 308-412 40-144 (196)
103 PRK15001 SAM-dependent 23S rib 98.5 4.9E-07 1.1E-11 99.0 10.5 107 295-411 219-341 (378)
104 PRK10901 16S rRNA methyltransf 98.5 4.8E-07 1E-11 99.9 10.4 119 308-427 244-390 (427)
105 PRK00312 pcm protein-L-isoaspa 98.5 9.5E-07 2.1E-11 87.8 10.5 92 308-411 78-176 (212)
106 PF05219 DREV: DREV methyltran 98.5 8.3E-07 1.8E-11 92.8 10.3 121 278-410 64-188 (265)
107 TIGR03533 L3_gln_methyl protei 98.4 1.5E-06 3.2E-11 91.4 12.1 116 309-434 122-271 (284)
108 TIGR00563 rsmB ribosomal RNA s 98.4 1.2E-06 2.6E-11 96.7 10.9 119 308-427 238-386 (426)
109 TIGR03704 PrmC_rel_meth putati 98.4 6.8E-06 1.5E-10 85.0 15.7 117 309-435 87-238 (251)
110 PRK14901 16S rRNA methyltransf 98.4 3.4E-06 7.4E-11 93.4 14.4 123 308-431 252-407 (434)
111 PRK14904 16S rRNA methyltransf 98.4 3.5E-06 7.5E-11 93.7 13.1 117 309-427 251-395 (445)
112 COG0500 SmtA SAM-dependent met 98.3 2.9E-06 6.3E-11 70.6 9.2 95 312-413 52-158 (257)
113 PRK04457 spermidine synthase; 98.3 9.6E-06 2.1E-10 84.5 15.1 112 291-410 52-177 (262)
114 KOG1271 Methyltransferases [Ge 98.3 3.5E-06 7.6E-11 84.4 11.0 121 310-434 69-202 (227)
115 PRK00811 spermidine synthase; 98.3 3.8E-06 8.3E-11 88.3 11.9 99 308-412 76-193 (283)
116 PRK11805 N5-glutamine S-adenos 98.3 3.1E-06 6.8E-11 90.1 11.3 111 310-430 135-279 (307)
117 PRK01544 bifunctional N5-gluta 98.3 5.8E-06 1.2E-10 93.7 13.6 283 309-661 139-475 (506)
118 PF03291 Pox_MCEL: mRNA cappin 98.3 2.7E-06 5.8E-11 91.8 9.7 101 308-413 62-189 (331)
119 PRK13256 thiopurine S-methyltr 98.3 4.3E-06 9.3E-11 86.0 10.6 96 309-410 44-163 (226)
120 PF02390 Methyltransf_4: Putat 98.3 4.3E-06 9.3E-11 83.7 9.8 120 310-433 19-156 (195)
121 PRK13943 protein-L-isoaspartat 98.3 3.4E-06 7.4E-11 90.7 9.7 91 309-411 81-181 (322)
122 COG2813 RsmC 16S RNA G1207 met 98.2 1.5E-05 3.2E-10 85.1 13.9 106 293-411 147-267 (300)
123 PF06080 DUF938: Protein of un 98.2 1.2E-05 2.6E-10 81.6 12.6 153 290-450 12-204 (204)
124 KOG2940 Predicted methyltransf 98.2 5.4E-07 1.2E-11 92.8 2.7 125 308-438 72-228 (325)
125 KOG2361 Predicted methyltransf 98.2 3.4E-06 7.4E-11 87.4 8.3 98 310-412 73-185 (264)
126 COG2890 HemK Methylase of poly 98.2 2.2E-05 4.7E-10 82.8 14.5 131 311-450 113-276 (280)
127 PF00891 Methyltransf_2: O-met 98.2 4.9E-06 1.1E-10 84.2 9.2 94 308-411 100-200 (241)
128 TIGR00446 nop2p NOL1/NOP2/sun 98.2 7.1E-06 1.5E-10 85.2 10.5 119 308-427 71-217 (264)
129 PRK14903 16S rRNA methyltransf 98.2 5.4E-06 1.2E-10 92.1 10.2 118 308-426 237-383 (431)
130 COG4123 Predicted O-methyltran 98.2 5.7E-06 1.2E-10 86.2 9.1 135 285-433 27-190 (248)
131 smart00650 rADc Ribosomal RNA 98.2 7.9E-06 1.7E-10 78.8 9.0 94 308-410 13-113 (169)
132 COG0220 Predicted S-adenosylme 98.1 8.6E-06 1.9E-10 83.8 9.5 106 310-417 50-171 (227)
133 PHA03411 putative methyltransf 98.1 1.6E-05 3.4E-10 84.1 11.3 118 309-432 65-209 (279)
134 KOG1975 mRNA cap methyltransfe 98.1 6.5E-06 1.4E-10 88.3 8.4 102 308-414 117-241 (389)
135 TIGR00478 tly hemolysin TlyA f 98.1 5.2E-05 1.1E-09 78.1 13.7 90 308-412 75-173 (228)
136 PF05724 TPMT: Thiopurine S-me 98.1 2.1E-05 4.6E-10 80.2 10.6 120 308-434 37-187 (218)
137 PHA03412 putative methyltransf 98.1 1.3E-05 2.7E-10 83.3 9.0 91 309-405 50-158 (241)
138 PRK14902 16S rRNA methyltransf 98.1 1.6E-05 3.4E-10 88.4 10.2 118 308-427 250-397 (444)
139 PRK01581 speE spermidine synth 98.1 5.5E-05 1.2E-09 82.9 14.0 119 308-432 150-292 (374)
140 TIGR00417 speE spermidine synt 98.0 4.4E-05 9.5E-10 79.5 12.2 99 308-412 72-188 (270)
141 PLN02781 Probable caffeoyl-CoA 98.0 3.1E-05 6.7E-10 79.4 9.7 109 290-410 57-178 (234)
142 PF01135 PCMT: Protein-L-isoas 98.0 1.3E-05 2.8E-10 81.4 6.6 91 308-411 72-173 (209)
143 PRK01544 bifunctional N5-gluta 97.9 5.5E-05 1.2E-09 85.8 11.2 122 308-432 347-483 (506)
144 PRK03612 spermidine synthase; 97.9 0.00011 2.4E-09 83.6 13.5 117 308-430 297-437 (521)
145 PLN02366 spermidine synthase 97.9 6.5E-05 1.4E-09 80.4 10.9 99 308-412 91-208 (308)
146 PF05891 Methyltransf_PK: AdoM 97.9 3.6E-05 7.8E-10 78.9 8.2 129 308-438 55-202 (218)
147 COG2242 CobL Precorrin-6B meth 97.9 0.00035 7.6E-09 70.3 14.8 113 308-430 34-153 (187)
148 KOG2899 Predicted methyltransf 97.9 3.2E-05 7E-10 80.5 7.5 100 308-412 58-211 (288)
149 PRK11783 rlmL 23S rRNA m(2)G24 97.9 8.4E-05 1.8E-09 87.4 11.7 117 309-433 539-676 (702)
150 PRK13168 rumA 23S rRNA m(5)U19 97.8 8.9E-05 1.9E-09 82.5 11.1 113 309-434 298-421 (443)
151 PRK03522 rumB 23S rRNA methylu 97.8 8.3E-05 1.8E-09 79.1 10.3 115 309-433 174-292 (315)
152 PRK10611 chemotaxis methyltran 97.8 8.5E-05 1.8E-09 79.0 10.3 98 310-412 117-264 (287)
153 COG2518 Pcm Protein-L-isoaspar 97.8 7.7E-05 1.7E-09 76.1 8.7 91 308-411 72-170 (209)
154 COG2521 Predicted archaeal met 97.8 5.6E-05 1.2E-09 78.5 7.5 141 290-437 118-277 (287)
155 PF08241 Methyltransf_11: Meth 97.8 4.4E-06 9.6E-11 70.3 -0.5 89 551-647 1-95 (95)
156 PF01739 CheR: CheR methyltran 97.8 3.1E-05 6.6E-10 78.0 5.4 100 308-412 31-177 (196)
157 KOG1331 Predicted methyltransf 97.8 1.4E-05 3.1E-10 84.4 3.1 96 309-410 46-143 (293)
158 PRK10909 rsmD 16S rRNA m(2)G96 97.7 0.00038 8.2E-09 70.3 11.8 131 309-452 54-192 (199)
159 PRK15128 23S rRNA m(5)C1962 me 97.7 0.00022 4.8E-09 78.9 11.0 99 309-412 221-341 (396)
160 TIGR00479 rumA 23S rRNA (uraci 97.7 0.00033 7.1E-09 77.5 12.1 113 309-433 293-416 (431)
161 PF12147 Methyltransf_20: Puta 97.7 0.00037 8E-09 74.4 11.5 141 308-450 135-311 (311)
162 KOG1269 SAM-dependent methyltr 97.6 7.1E-05 1.5E-09 82.0 5.8 99 310-410 112-215 (364)
163 COG1041 Predicted DNA modifica 97.6 0.00037 8E-09 75.8 10.8 116 308-435 197-328 (347)
164 KOG1499 Protein arginine N-met 97.6 0.00017 3.8E-09 78.2 8.1 117 284-409 38-166 (346)
165 PF10294 Methyltransf_16: Puta 97.6 0.00024 5.3E-09 69.5 8.3 102 308-413 45-159 (173)
166 COG2519 GCD14 tRNA(1-methylade 97.5 0.001 2.2E-08 69.8 12.6 111 308-432 94-215 (256)
167 TIGR02085 meth_trns_rumB 23S r 97.5 0.0014 3.1E-08 71.6 13.9 116 309-434 234-353 (374)
168 PLN02672 methionine S-methyltr 97.5 0.00076 1.6E-08 82.6 12.5 116 309-433 119-299 (1082)
169 PRK04148 hypothetical protein; 97.5 0.00041 8.8E-09 66.5 7.9 82 309-400 17-101 (134)
170 PF11968 DUF3321: Putative met 97.4 0.0011 2.4E-08 68.2 11.0 128 310-453 53-195 (219)
171 KOG2904 Predicted methyltransf 97.4 0.0013 2.7E-08 70.0 11.6 97 310-411 150-286 (328)
172 PF08704 GCD14: tRNA methyltra 97.4 0.001 2.2E-08 69.6 10.8 113 308-433 40-167 (247)
173 PRK11727 23S rRNA mA1618 methy 97.4 0.00055 1.2E-08 74.0 8.9 88 290-379 92-196 (321)
174 PF01728 FtsJ: FtsJ-like methy 97.4 0.00037 8E-09 67.7 6.9 102 308-412 23-141 (181)
175 PRK00274 ksgA 16S ribosomal RN 97.3 0.00048 1E-08 72.0 7.3 67 308-379 42-112 (272)
176 PLN02476 O-methyltransferase 97.3 0.00092 2E-08 71.0 9.3 97 309-410 119-228 (278)
177 TIGR00755 ksgA dimethyladenosi 97.3 0.0013 2.8E-08 67.8 9.6 64 308-378 29-100 (253)
178 PRK14896 ksgA 16S ribosomal RN 97.2 0.0012 2.6E-08 68.5 8.7 65 308-379 29-98 (258)
179 PRK00107 gidB 16S rRNA methylt 97.2 0.00072 1.6E-08 67.6 6.5 146 527-685 28-187 (187)
180 PRK11933 yebU rRNA (cytosine-C 97.2 0.0034 7.5E-08 71.1 12.3 119 308-428 113-261 (470)
181 PF02527 GidB: rRNA small subu 97.2 0.0088 1.9E-07 59.9 13.9 135 290-435 33-173 (184)
182 PF01596 Methyltransf_3: O-met 97.1 0.001 2.2E-08 67.6 7.1 98 309-411 46-156 (205)
183 COG1352 CheR Methylase of chem 97.1 0.00096 2.1E-08 70.5 7.2 129 281-414 67-245 (268)
184 COG4122 Predicted O-methyltran 97.1 0.0023 4.9E-08 66.0 9.3 106 289-410 47-166 (219)
185 PF01170 UPF0020: Putative RNA 97.1 0.0015 3.3E-08 64.5 7.7 117 308-435 28-169 (179)
186 KOG3987 Uncharacterized conser 97.1 0.00037 8E-09 71.5 3.3 121 277-409 83-206 (288)
187 PF07942 N2227: N2227-like pro 97.0 0.0075 1.6E-07 64.0 12.7 144 291-437 39-242 (270)
188 COG2263 Predicted RNA methylas 97.0 0.0031 6.7E-08 63.9 9.1 115 308-434 45-165 (198)
189 PF13489 Methyltransf_23: Meth 97.0 0.00011 2.3E-09 68.1 -1.2 95 546-651 22-117 (161)
190 PF02475 Met_10: Met-10+ like- 96.9 0.0027 5.8E-08 64.4 8.0 122 273-407 72-199 (200)
191 PLN02823 spermine synthase 96.9 0.0098 2.1E-07 64.8 12.6 98 308-411 103-221 (336)
192 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.8 0.0093 2E-07 62.8 11.3 66 371-436 157-238 (256)
193 PRK04338 N(2),N(2)-dimethylgua 96.8 0.0025 5.4E-08 70.3 7.2 96 310-411 59-159 (382)
194 PF05185 PRMT5: PRMT5 arginine 96.8 0.0064 1.4E-07 68.5 10.0 95 309-407 187-294 (448)
195 KOG3191 Predicted N6-DNA-methy 96.7 0.022 4.7E-07 57.8 12.0 132 309-444 44-200 (209)
196 PLN02233 ubiquinone biosynthes 96.7 0.0011 2.5E-08 68.8 3.1 112 526-649 59-182 (261)
197 smart00828 PKS_MT Methyltransf 96.7 0.00037 8.1E-09 69.4 -0.5 93 549-650 2-105 (224)
198 PLN02244 tocopherol O-methyltr 96.7 0.00072 1.6E-08 72.9 1.6 95 547-649 119-223 (340)
199 PLN02589 caffeoyl-CoA O-methyl 96.5 0.0067 1.5E-07 63.4 7.7 97 309-410 80-190 (247)
200 TIGR02752 MenG_heptapren 2-hep 96.5 0.0012 2.6E-08 66.1 2.0 114 525-650 30-152 (231)
201 PRK00536 speE spermidine synth 96.5 0.017 3.6E-07 61.1 10.3 111 291-415 57-176 (262)
202 TIGR00095 RNA methyltransferas 96.4 0.015 3.3E-07 58.0 8.8 100 309-412 50-161 (189)
203 PRK10258 biotin biosynthesis p 96.3 0.0024 5.2E-08 65.0 3.0 113 528-649 26-140 (251)
204 TIGR00537 hemK_rel_arch HemK-r 96.3 0.0056 1.2E-07 59.5 5.1 118 548-672 21-164 (179)
205 KOG3178 Hydroxyindole-O-methyl 96.3 0.01 2.2E-07 64.8 7.4 95 308-411 177-276 (342)
206 COG0144 Sun tRNA and rRNA cyto 96.2 0.018 3.8E-07 63.0 9.0 119 308-427 156-306 (355)
207 KOG2352 Predicted spermine/spe 96.2 0.015 3.2E-07 65.9 8.5 96 311-411 51-162 (482)
208 PTZ00338 dimethyladenosine tra 96.1 0.015 3.2E-07 62.2 7.5 65 308-379 36-108 (294)
209 KOG1661 Protein-L-isoaspartate 96.1 0.016 3.4E-07 59.9 7.1 92 309-412 83-195 (237)
210 COG1189 Predicted rRNA methyla 96.1 0.13 2.9E-06 53.9 13.9 118 308-435 79-222 (245)
211 PF02384 N6_Mtase: N-6 DNA Met 96.0 0.012 2.6E-07 61.9 6.5 156 293-453 35-235 (311)
212 PRK08287 cobalt-precorrin-6Y C 96.0 0.0062 1.4E-07 59.6 4.1 118 538-667 25-150 (187)
213 COG4627 Uncharacterized protei 96.0 0.0027 5.8E-08 62.8 1.4 50 363-412 38-88 (185)
214 PTZ00098 phosphoethanolamine N 95.9 0.0015 3.2E-08 68.1 -0.9 104 540-650 48-157 (263)
215 PF02353 CMAS: Mycolic acid cy 95.9 0.0017 3.6E-08 68.6 -0.7 108 535-648 53-165 (273)
216 PF09243 Rsm22: Mitochondrial 95.9 0.072 1.6E-06 56.2 11.5 110 291-413 20-142 (274)
217 KOG1663 O-methyltransferase [S 95.9 0.067 1.4E-06 55.8 10.7 97 309-410 74-183 (237)
218 COG0421 SpeE Spermidine syntha 95.8 0.087 1.9E-06 56.3 11.9 114 291-413 61-193 (282)
219 TIGR02143 trmA_only tRNA (urac 95.8 0.03 6.6E-07 61.0 8.6 106 311-433 200-330 (353)
220 PRK15001 SAM-dependent 23S rib 95.8 0.22 4.9E-06 55.3 15.3 129 548-684 230-373 (378)
221 PRK11760 putative 23S rRNA C24 95.8 0.051 1.1E-06 59.7 10.0 91 308-411 211-306 (357)
222 PRK05031 tRNA (uracil-5-)-meth 95.8 0.031 6.7E-07 61.1 8.4 113 310-433 208-339 (362)
223 PRK11207 tellurite resistance 95.7 0.0022 4.8E-08 63.8 -0.5 93 548-647 32-132 (197)
224 PRK14103 trans-aconitate 2-met 95.7 0.0049 1.1E-07 63.3 1.9 103 536-648 21-125 (255)
225 PF01209 Ubie_methyltran: ubiE 95.7 0.0022 4.8E-08 66.1 -0.8 114 526-649 33-153 (233)
226 COG1092 Predicted SAM-dependen 95.7 0.029 6.2E-07 62.5 7.7 103 309-416 218-342 (393)
227 PRK00121 trmB tRNA (guanine-N( 95.5 0.0062 1.4E-07 60.9 1.6 122 547-671 41-179 (202)
228 PRK08317 hypothetical protein; 95.5 0.0052 1.1E-07 60.4 1.0 96 548-649 21-124 (241)
229 TIGR00438 rrmJ cell division p 95.5 0.013 2.8E-07 57.4 3.8 123 548-683 34-186 (188)
230 TIGR02987 met_A_Alw26 type II 95.5 0.037 8.1E-07 63.0 8.0 24 392-415 177-201 (524)
231 PF03602 Cons_hypoth95: Conser 95.4 0.047 1E-06 54.5 7.3 127 309-449 43-183 (183)
232 PRK00517 prmA ribosomal protei 95.2 0.023 5E-07 58.6 4.8 110 548-671 121-236 (250)
233 TIGR00138 gidB 16S rRNA methyl 95.2 0.0076 1.7E-07 59.7 1.2 132 526-671 25-165 (181)
234 PRK11036 putative S-adenosyl-L 95.1 0.0055 1.2E-07 63.0 -0.0 94 548-648 46-148 (255)
235 TIGR00477 tehB tellurite resis 95.1 0.0066 1.4E-07 60.3 0.5 93 548-647 32-131 (195)
236 COG2265 TrmA SAM-dependent met 95.1 0.13 2.9E-06 58.0 10.5 101 308-415 293-401 (432)
237 PRK15068 tRNA mo(5)U34 methylt 95.1 0.0086 1.9E-07 64.5 1.1 93 548-648 124-225 (322)
238 COG3963 Phospholipid N-methylt 95.0 0.066 1.4E-06 53.8 7.1 102 302-411 43-157 (194)
239 COG0357 GidB Predicted S-adeno 95.0 0.57 1.2E-05 48.5 14.2 121 309-437 68-195 (215)
240 KOG1500 Protein arginine N-met 95.0 0.16 3.5E-06 55.7 10.6 117 308-431 177-307 (517)
241 TIGR00452 methyltransferase, p 95.0 0.017 3.6E-07 62.4 3.1 94 548-648 123-224 (314)
242 TIGR03439 methyl_EasF probable 95.0 0.1 2.2E-06 56.6 9.1 110 290-410 64-197 (319)
243 PRK11705 cyclopropane fatty ac 95.0 0.0095 2.1E-07 65.7 1.2 101 540-649 163-267 (383)
244 PRK13699 putative methylase; P 95.0 0.064 1.4E-06 55.2 7.2 72 368-452 16-101 (227)
245 COG3897 Predicted methyltransf 94.9 0.067 1.5E-06 54.8 6.9 100 308-413 79-182 (218)
246 TIGR02072 BioC biotin biosynth 94.9 0.012 2.5E-07 58.2 1.4 97 548-649 36-135 (240)
247 PF01564 Spermine_synth: Sperm 94.8 0.089 1.9E-06 54.8 7.8 135 290-432 60-215 (246)
248 PRK00377 cbiT cobalt-precorrin 94.7 0.028 6E-07 55.8 3.7 143 520-671 14-168 (198)
249 PRK01683 trans-aconitate 2-met 94.7 0.013 2.8E-07 59.9 1.1 103 536-648 23-129 (258)
250 PF12847 Methyltransf_18: Meth 94.7 0.0075 1.6E-07 53.1 -0.5 96 549-649 4-111 (112)
251 PRK12335 tellurite resistance 94.5 0.011 2.4E-07 62.1 0.4 92 549-647 123-221 (287)
252 KOG3201 Uncharacterized conser 94.5 0.029 6.2E-07 56.1 3.1 123 309-435 30-164 (201)
253 TIGR00406 prmA ribosomal prote 94.5 0.023 5E-07 60.0 2.6 111 548-668 161-278 (288)
254 PRK11783 rlmL 23S rRNA m(2)G24 94.5 0.21 4.4E-06 59.4 10.6 122 548-671 540-678 (702)
255 TIGR01934 MenG_MenH_UbiE ubiqu 94.4 0.013 2.8E-07 57.5 0.4 96 548-649 41-143 (223)
256 COG0293 FtsJ 23S rRNA methylas 94.3 0.22 4.7E-06 51.2 8.9 96 308-412 45-161 (205)
257 TIGR00308 TRM1 tRNA(guanine-26 94.2 0.11 2.5E-06 57.4 7.3 95 310-410 46-147 (374)
258 COG2226 UbiE Methylase involve 94.1 0.027 5.8E-07 58.9 2.1 112 525-649 36-156 (238)
259 PRK05134 bifunctional 3-demeth 94.1 0.014 2.9E-07 58.8 -0.1 94 549-649 51-151 (233)
260 PRK05785 hypothetical protein; 94.0 0.029 6.4E-07 57.3 2.2 105 526-643 35-141 (226)
261 PF00891 Methyltransf_2: O-met 94.0 0.011 2.5E-07 59.9 -0.9 101 542-650 96-200 (241)
262 PF05958 tRNA_U5-meth_tr: tRNA 93.9 0.76 1.7E-05 50.3 12.9 110 311-433 199-329 (352)
263 TIGR03534 RF_mod_PrmC protein- 93.9 0.043 9.4E-07 55.2 3.0 116 548-667 89-235 (251)
264 KOG3420 Predicted RNA methylas 93.8 0.1 2.2E-06 51.6 5.2 67 308-379 48-121 (185)
265 PRK09328 N5-glutamine S-adenos 93.8 0.12 2.6E-06 53.1 6.1 133 548-684 110-275 (275)
266 PF13679 Methyltransf_32: Meth 93.8 0.16 3.4E-06 48.1 6.4 51 289-339 6-64 (141)
267 PF08123 DOT1: Histone methyla 93.8 0.17 3.7E-06 51.7 7.0 101 308-411 42-158 (205)
268 PLN02396 hexaprenyldihydroxybe 93.7 0.016 3.4E-07 62.8 -0.4 95 548-649 133-235 (322)
269 PRK11088 rrmA 23S rRNA methylt 93.7 0.037 8.1E-07 57.6 2.3 102 547-660 86-193 (272)
270 TIGR01983 UbiG ubiquinone bios 93.7 0.018 3.9E-07 57.2 -0.1 93 547-649 46-149 (224)
271 PF05401 NodS: Nodulation prot 93.7 0.0098 2.1E-07 60.6 -1.9 100 541-649 38-146 (201)
272 COG2520 Predicted methyltransf 93.7 0.76 1.6E-05 50.6 12.2 137 282-430 168-313 (341)
273 PLN02668 indole-3-acetate carb 93.6 0.24 5.1E-06 55.3 8.4 20 368-388 158-177 (386)
274 PTZ00146 fibrillarin; Provisio 93.6 0.024 5.2E-07 60.9 0.6 102 539-648 127-236 (293)
275 PF10672 Methyltrans_SAM: S-ad 93.4 0.27 6E-06 52.7 8.2 100 309-413 124-241 (286)
276 PF08242 Methyltransf_12: Meth 93.3 0.022 4.7E-07 49.6 -0.2 90 551-645 1-99 (99)
277 PLN02490 MPBQ/MSBQ methyltrans 93.3 0.037 8.1E-07 60.5 1.5 96 548-649 115-215 (340)
278 PF01269 Fibrillarin: Fibrilla 93.2 0.35 7.5E-06 50.5 8.2 96 308-411 73-179 (229)
279 PRK11188 rrmJ 23S rRNA methylt 93.1 0.067 1.5E-06 54.1 2.9 127 548-684 53-206 (209)
280 PRK14968 putative methyltransf 93.0 0.12 2.6E-06 49.6 4.4 117 548-670 25-170 (188)
281 PRK11873 arsM arsenite S-adeno 92.8 0.035 7.6E-07 57.4 0.5 44 602-649 140-183 (272)
282 PRK13944 protein-L-isoaspartat 92.8 0.041 9E-07 55.1 0.9 90 548-648 74-172 (205)
283 TIGR02716 C20_methyl_CrtF C-20 92.8 0.035 7.6E-07 58.6 0.4 99 545-649 148-254 (306)
284 TIGR00740 methyltransferase, p 92.7 0.029 6.4E-07 57.0 -0.3 96 548-650 55-162 (239)
285 PF04816 DUF633: Family of unk 92.6 0.48 1E-05 48.4 8.2 116 312-436 1-123 (205)
286 COG5459 Predicted rRNA methyla 92.6 0.18 4E-06 55.7 5.4 113 293-412 102-227 (484)
287 TIGR00091 tRNA (guanine-N(7)-) 92.5 0.064 1.4E-06 53.2 1.8 113 548-663 18-147 (194)
288 smart00138 MeTrc Methyltransfe 92.4 0.063 1.4E-06 56.3 1.7 130 519-653 71-246 (264)
289 PRK09489 rsmC 16S ribosomal RN 92.4 0.083 1.8E-06 57.7 2.7 129 549-685 199-337 (342)
290 PRK11805 N5-glutamine S-adenos 92.3 0.076 1.6E-06 57.0 2.1 129 548-684 135-296 (307)
291 COG4798 Predicted methyltransf 92.3 1 2.2E-05 46.6 10.0 126 308-435 48-203 (238)
292 cd02440 AdoMet_MTases S-adenos 92.2 0.056 1.2E-06 44.4 0.8 95 549-648 1-103 (107)
293 KOG3115 Methyltransferase-like 92.1 0.26 5.5E-06 51.1 5.5 96 311-412 63-185 (249)
294 KOG2915 tRNA(1-methyladenosine 92.1 2.3 5E-05 45.9 12.6 126 293-434 94-232 (314)
295 PF03059 NAS: Nicotianamine sy 92.0 1.4 3E-05 47.3 11.1 138 309-452 121-273 (276)
296 KOG1122 tRNA and rRNA cytosine 91.7 0.92 2E-05 51.2 9.7 124 308-433 241-396 (460)
297 PRK00050 16S rRNA m(4)C1402 me 91.6 0.23 5E-06 53.5 4.7 39 309-352 20-63 (296)
298 COG0030 KsgA Dimethyladenosine 91.4 0.5 1.1E-05 50.2 6.9 66 309-379 31-102 (259)
299 PRK13942 protein-L-isoaspartat 91.3 0.084 1.8E-06 53.3 1.1 91 548-648 78-175 (212)
300 TIGR00536 hemK_fam HemK family 91.3 0.16 3.4E-06 53.6 3.1 134 548-685 116-283 (284)
301 PRK15451 tRNA cmo(5)U34 methyl 91.3 0.074 1.6E-06 54.7 0.7 97 548-650 58-165 (247)
302 PRK11524 putative methyltransf 91.1 0.53 1.1E-05 49.7 6.9 46 368-413 23-83 (284)
303 KOG0820 Ribosomal RNA adenine 91.0 0.56 1.2E-05 50.5 6.8 64 308-378 58-129 (315)
304 PRK14967 putative methyltransf 90.9 0.14 3.1E-06 51.7 2.3 119 548-670 38-181 (223)
305 KOG1709 Guanidinoacetate methy 90.9 0.98 2.1E-05 47.3 8.3 96 308-410 101-206 (271)
306 PF01189 Nol1_Nop2_Fmu: NOL1/N 90.8 0.087 1.9E-06 55.9 0.7 120 308-428 85-238 (283)
307 TIGR02469 CbiT precorrin-6Y C5 90.7 0.12 2.6E-06 45.8 1.4 96 540-648 15-121 (124)
308 COG0742 N6-adenine-specific me 90.7 3.3 7.1E-05 42.2 11.7 125 309-450 44-185 (187)
309 PF01728 FtsJ: FtsJ-like methy 90.6 1.1 2.4E-05 43.6 8.1 141 542-684 19-180 (181)
310 TIGR03704 PrmC_rel_meth putati 90.6 0.14 3E-06 53.4 1.9 126 548-675 88-242 (251)
311 TIGR00080 pimt protein-L-isoas 90.5 0.11 2.4E-06 52.2 1.1 87 548-648 79-176 (215)
312 TIGR03533 L3_gln_methyl protei 90.4 0.15 3.3E-06 54.0 2.1 114 548-666 123-267 (284)
313 PRK00216 ubiE ubiquinone/menaq 89.9 0.12 2.6E-06 51.2 0.8 95 548-649 53-158 (239)
314 PF13578 Methyltransf_24: Meth 89.8 0.094 2E-06 46.5 -0.1 94 313-410 1-105 (106)
315 PRK06922 hypothetical protein; 89.8 0.088 1.9E-06 62.1 -0.4 100 548-650 420-538 (677)
316 PRK07402 precorrin-6B methylas 89.7 0.31 6.8E-06 48.1 3.5 37 629-665 122-159 (196)
317 COG1064 AdhP Zn-dependent alco 88.9 1.5 3.2E-05 48.3 8.3 90 308-412 166-261 (339)
318 PF13847 Methyltransf_31: Meth 88.5 0.12 2.6E-06 48.7 -0.3 97 548-651 5-112 (152)
319 PLN02232 ubiquinone biosynthes 88.4 0.13 2.8E-06 49.7 -0.2 49 598-650 34-82 (160)
320 PRK06202 hypothetical protein; 88.2 0.2 4.4E-06 50.6 1.0 100 546-649 60-166 (232)
321 TIGR01444 fkbM_fam methyltrans 87.9 0.6 1.3E-05 43.1 3.9 29 311-339 1-33 (143)
322 KOG2187 tRNA uracil-5-methyltr 87.8 1.2 2.7E-05 51.3 6.9 48 308-356 383-432 (534)
323 COG2384 Predicted SAM-dependen 87.4 14 0.00029 38.9 13.6 139 311-458 19-166 (226)
324 PRK04266 fibrillarin; Provisio 87.3 0.14 3E-06 52.8 -0.7 96 540-647 68-174 (226)
325 PF01861 DUF43: Protein of unk 87.1 8.5 0.00018 40.8 12.1 123 308-435 44-176 (243)
326 KOG2798 Putative trehalase [Ca 86.3 4.1 8.8E-05 44.9 9.5 65 371-436 258-336 (369)
327 PF06859 Bin3: Bicoid-interact 86.0 0.31 6.6E-06 45.7 0.8 41 372-412 1-46 (110)
328 PRK04457 spermidine synthase; 85.6 1.1 2.3E-05 47.2 4.7 135 546-684 66-216 (262)
329 PRK00312 pcm protein-L-isoaspa 85.5 0.52 1.1E-05 47.1 2.3 86 548-648 80-174 (212)
330 PRK14966 unknown domain/N5-glu 85.5 0.84 1.8E-05 51.6 4.1 153 523-685 236-419 (423)
331 KOG2793 Putative N2,N2-dimethy 85.3 9.8 0.00021 40.4 11.5 97 309-412 87-201 (248)
332 COG4262 Predicted spermidine s 85.2 5.6 0.00012 44.7 10.0 164 278-450 260-451 (508)
333 TIGR02081 metW methionine bios 85.1 0.38 8.3E-06 47.4 1.1 91 549-648 16-108 (194)
334 PF06325 PrmA: Ribosomal prote 84.2 0.96 2.1E-05 48.8 3.7 128 548-685 163-295 (295)
335 KOG1540 Ubiquinone biosynthesi 83.7 0.73 1.6E-05 49.2 2.5 98 547-649 101-214 (296)
336 PRK14121 tRNA (guanine-N(7)-)- 83.2 0.86 1.9E-05 51.0 2.9 111 548-663 124-250 (390)
337 PF00398 RrnaAD: Ribosomal RNA 83.1 3.7 7.9E-05 42.9 7.3 31 308-338 30-62 (262)
338 PF09445 Methyltransf_15: RNA 82.9 1.3 2.8E-05 44.1 3.7 30 310-339 1-32 (163)
339 COG0116 Predicted N6-adenine-s 82.6 4.4 9.6E-05 45.4 8.0 109 304-414 188-348 (381)
340 COG1889 NOP1 Fibrillarin-like 81.9 7.9 0.00017 40.4 8.9 97 308-411 76-181 (231)
341 KOG2198 tRNA cytosine-5-methyl 81.8 11 0.00023 42.3 10.5 118 291-410 137-296 (375)
342 PF01555 N6_N4_Mtase: DNA meth 81.2 1.8 3.8E-05 42.3 4.0 53 388-451 34-87 (231)
343 TIGR00417 speE spermidine synt 80.3 2.1 4.6E-05 44.9 4.4 98 546-648 72-185 (270)
344 cd08283 FDH_like_1 Glutathione 80.2 7.9 0.00017 42.1 8.9 98 309-412 185-308 (386)
345 PRK07580 Mg-protoporphyrin IX 79.5 1.1 2.3E-05 44.7 1.9 99 547-650 64-167 (230)
346 PF02390 Methyltransf_4: Putat 79.5 0.79 1.7E-05 46.2 0.9 112 549-664 20-149 (195)
347 COG2890 HemK Methylase of poly 79.4 2.6 5.7E-05 44.9 4.8 149 523-684 94-276 (280)
348 TIGR01177 conserved hypothetic 79.3 1.3 2.8E-05 47.8 2.5 113 549-666 185-309 (329)
349 PF05971 Methyltransf_10: Prot 79.3 4.8 0.0001 43.8 6.7 114 275-393 67-195 (299)
350 cd08254 hydroxyacyl_CoA_DH 6-h 78.2 9.6 0.00021 39.5 8.4 91 309-411 166-264 (338)
351 PF10354 DUF2431: Domain of un 77.3 25 0.00055 34.8 10.6 115 315-434 3-149 (166)
352 PLN02781 Probable caffeoyl-CoA 77.3 1.2 2.7E-05 45.8 1.6 71 606-685 142-233 (234)
353 PF07091 FmrO: Ribosomal RNA m 76.9 6.8 0.00015 41.7 6.9 119 308-432 105-239 (251)
354 COG1063 Tdh Threonine dehydrog 76.8 8.2 0.00018 42.1 7.8 89 311-412 171-271 (350)
355 PF05219 DREV: DREV methyltran 76.1 1.2 2.6E-05 47.5 1.1 90 546-648 94-187 (265)
356 PF05175 MTS: Methyltransferas 75.8 1.1 2.5E-05 43.5 0.8 118 547-671 32-160 (170)
357 TIGR02021 BchM-ChlM magnesium 75.8 1.5 3.2E-05 44.0 1.6 100 547-654 56-163 (219)
358 COG2813 RsmC 16S RNA G1207 met 75.7 35 0.00075 37.4 11.9 139 536-685 150-300 (300)
359 PRK09880 L-idonate 5-dehydroge 74.0 13 0.00029 39.5 8.3 91 309-411 170-267 (343)
360 PF03269 DUF268: Caenorhabditi 73.0 2.6 5.5E-05 42.5 2.4 41 371-412 62-113 (177)
361 COG0500 SmtA SAM-dependent met 72.9 3.2 7E-05 34.4 2.7 96 550-652 52-158 (257)
362 TIGR00563 rsmB ribosomal RNA s 72.2 3.2 7E-05 46.4 3.3 115 540-659 234-385 (426)
363 PF03848 TehB: Tellurite resis 71.0 1.2 2.7E-05 45.2 -0.3 93 549-648 33-132 (192)
364 PF03492 Methyltransf_7: SAM d 70.7 12 0.00027 40.9 7.3 78 308-387 16-121 (334)
365 COG0286 HsdM Type I restrictio 70.1 37 0.00081 39.2 11.2 123 282-415 166-331 (489)
366 TIGR03438 probable methyltrans 69.4 1.4 3.1E-05 46.9 -0.2 98 548-648 65-176 (301)
367 cd00315 Cyt_C5_DNA_methylase C 68.3 9.7 0.00021 40.2 5.7 116 311-433 2-139 (275)
368 COG3129 Predicted SAM-dependen 68.3 13 0.00029 39.6 6.5 123 274-401 41-179 (292)
369 PF13649 Methyltransf_25: Meth 67.4 0.3 6.5E-06 42.9 -4.9 91 550-643 1-101 (101)
370 PRK09424 pntA NAD(P) transhydr 66.7 30 0.00065 40.3 9.6 98 308-411 164-286 (509)
371 PF00107 ADH_zinc_N: Zinc-bind 66.6 9.3 0.0002 34.5 4.5 83 318-412 1-91 (130)
372 COG2230 Cfa Cyclopropane fatty 65.7 2.6 5.6E-05 45.4 0.8 104 537-648 65-175 (283)
373 COG4076 Predicted RNA methylas 64.9 12 0.00026 38.8 5.3 89 310-407 34-132 (252)
374 PRK14902 16S rRNA methyltransf 64.8 1.6 3.5E-05 49.0 -1.0 99 548-648 252-378 (444)
375 PRK00811 spermidine synthase; 64.3 3.4 7.4E-05 43.9 1.4 99 546-648 76-190 (283)
376 COG4627 Uncharacterized protei 63.5 1 2.2E-05 45.1 -2.5 44 603-648 42-85 (185)
377 TIGR00446 nop2p NOL1/NOP2/sun 63.4 3.2 6.9E-05 43.5 1.0 108 549-659 74-216 (264)
378 PF05148 Methyltransf_8: Hypot 63.0 17 0.00037 38.1 6.1 109 548-674 74-186 (219)
379 PF04672 Methyltransf_19: S-ad 63.0 43 0.00094 36.1 9.3 98 308-411 68-191 (267)
380 KOG1099 SAM-dependent methyltr 61.8 12 0.00027 39.8 4.8 93 308-409 41-162 (294)
381 KOG3010 Methyltransferase [Gen 61.7 3.1 6.7E-05 44.2 0.5 113 546-667 33-158 (261)
382 PF06962 rRNA_methylase: Putat 61.4 25 0.00055 34.4 6.6 94 331-429 2-114 (140)
383 KOG1596 Fibrillarin and relate 60.6 33 0.00071 37.0 7.7 97 309-413 157-264 (317)
384 COG4976 Predicted methyltransf 60.5 1.7 3.8E-05 46.0 -1.5 100 542-648 121-224 (287)
385 TIGR03587 Pse_Me-ase pseudamin 60.5 3.5 7.7E-05 41.7 0.7 95 547-649 44-142 (204)
386 cd08230 glucose_DH Glucose deh 60.3 36 0.00079 36.3 8.3 91 309-411 173-270 (355)
387 cd08245 CAD Cinnamyl alcohol d 59.3 42 0.00092 34.9 8.4 91 309-411 163-257 (330)
388 PF13659 Methyltransf_26: Meth 58.2 0.76 1.6E-05 40.8 -4.1 95 549-647 3-113 (117)
389 TIGR02822 adh_fam_2 zinc-bindi 57.9 64 0.0014 34.4 9.6 86 309-411 166-255 (329)
390 cd08237 ribitol-5-phosphate_DH 57.4 34 0.00075 36.6 7.5 86 309-410 164-256 (341)
391 PLN02366 spermidine synthase 57.0 5.3 0.00012 43.3 1.4 101 546-648 91-205 (308)
392 PF04989 CmcI: Cephalosporin h 56.7 16 0.00035 37.9 4.6 117 284-412 16-149 (206)
393 PRK13943 protein-L-isoaspartat 55.6 4.2 9.1E-05 44.4 0.3 26 539-566 75-100 (322)
394 PRK01581 speE spermidine synth 55.5 11 0.00023 42.4 3.3 103 546-650 150-269 (374)
395 cd08234 threonine_DH_like L-th 55.2 45 0.00097 34.7 7.8 90 309-411 160-258 (334)
396 PRK14904 16S rRNA methyltransf 54.5 7.9 0.00017 43.6 2.2 20 630-649 358-377 (445)
397 KOG3045 Predicted RNA methylas 54.4 9 0.00019 41.4 2.4 105 549-672 183-290 (325)
398 PRK01747 mnmC bifunctional tRN 54.3 39 0.00085 39.9 8.0 55 371-434 165-224 (662)
399 PRK14903 16S rRNA methyltransf 52.9 7.2 0.00016 44.0 1.6 103 540-648 233-365 (431)
400 cd05188 MDR Medium chain reduc 52.9 69 0.0015 31.6 8.4 93 308-412 134-234 (271)
401 PF07757 AdoMet_MTase: Predict 51.9 9.7 0.00021 36.0 2.0 28 309-336 59-86 (112)
402 PF14740 DUF4471: Domain of un 50.8 21 0.00045 38.8 4.5 59 368-433 219-285 (289)
403 cd08232 idonate-5-DH L-idonate 49.8 61 0.0013 34.0 7.8 90 309-410 166-262 (339)
404 PF10294 Methyltransf_16: Puta 49.3 2.6 5.7E-05 41.4 -2.3 97 545-648 44-155 (173)
405 PLN02586 probable cinnamyl alc 49.0 47 0.001 36.0 7.0 91 309-411 184-279 (360)
406 PF00145 DNA_methylase: C-5 cy 48.6 52 0.0011 34.1 7.0 115 311-434 2-139 (335)
407 TIGR00675 dcm DNA-methyltransf 47.6 1.2E+02 0.0025 32.9 9.7 27 312-338 1-30 (315)
408 PRK10901 16S rRNA methyltransf 46.5 10 0.00022 42.5 1.5 100 548-648 246-371 (427)
409 KOG2904 Predicted methyltransf 45.5 55 0.0012 35.9 6.6 157 524-684 129-327 (328)
410 KOG2361 Predicted methyltransf 45.5 6.4 0.00014 42.0 -0.3 45 604-650 140-184 (264)
411 PF04147 Nop14: Nop14-like fam 44.9 19 0.00041 44.3 3.5 10 182-192 418-427 (840)
412 PRK11524 putative methyltransf 43.5 42 0.00091 35.6 5.5 40 308-352 208-249 (284)
413 PF03514 GRAS: GRAS domain fam 43.5 78 0.0017 35.3 7.7 102 308-409 110-243 (374)
414 PRK13255 thiopurine S-methyltr 43.4 9.6 0.00021 39.2 0.6 94 549-647 40-153 (218)
415 TIGR03201 dearomat_had 6-hydro 42.9 99 0.0021 33.0 8.2 91 309-412 167-274 (349)
416 KOG4589 Cell division protein 42.2 24 0.00052 36.7 3.2 95 308-411 69-185 (232)
417 COG0863 DNA modification methy 41.3 54 0.0012 34.0 5.8 52 389-453 78-129 (302)
418 PRK14901 16S rRNA methyltransf 40.6 8.6 0.00019 43.2 -0.2 55 629-683 364-429 (434)
419 TIGR03451 mycoS_dep_FDH mycoth 40.2 1.2E+02 0.0025 32.6 8.3 91 309-412 177-278 (358)
420 KOG1227 Putative methyltransfe 39.9 24 0.00052 38.9 2.9 130 264-405 154-290 (351)
421 cd08255 2-desacetyl-2-hydroxye 39.8 1.3E+02 0.0028 30.5 8.1 89 309-411 98-191 (277)
422 PHA01634 hypothetical protein 38.7 41 0.00089 33.1 4.0 31 308-338 28-61 (156)
423 PLN03075 nicotianamine synthas 38.6 18 0.0004 39.3 1.9 134 546-685 123-275 (296)
424 PF04445 SAM_MT: Putative SAM- 38.6 65 0.0014 34.1 5.8 68 310-379 77-158 (234)
425 PLN02476 O-methyltransferase 38.2 30 0.00066 37.3 3.4 128 545-685 117-278 (278)
426 KOG1832 HIV-1 Vpr-binding prot 38.1 17 0.00037 44.8 1.7 14 135-148 1461-1474(1516)
427 TIGR03366 HpnZ_proposed putati 38.0 1E+02 0.0022 31.9 7.2 89 309-410 121-218 (280)
428 COG2264 PrmA Ribosomal protein 37.7 51 0.0011 36.1 5.0 129 546-684 162-298 (300)
429 TIGR03840 TMPT_Se_Te thiopurin 37.3 14 0.0003 37.8 0.7 21 548-568 36-56 (213)
430 TIGR01202 bchC 2-desacetyl-2-h 37.3 99 0.0021 32.6 7.1 82 310-411 146-232 (308)
431 cd08281 liver_ADH_like1 Zinc-d 37.1 1.1E+02 0.0024 33.0 7.5 91 309-411 192-291 (371)
432 PF11899 DUF3419: Protein of u 36.8 39 0.00084 38.0 4.1 42 368-410 291-334 (380)
433 KOG2539 Mitochondrial/chloropl 36.5 76 0.0017 36.9 6.3 100 309-413 201-318 (491)
434 COG0220 Predicted S-adenosylme 35.3 30 0.00064 36.2 2.7 111 548-663 50-180 (227)
435 KOG2920 Predicted methyltransf 35.1 46 0.00099 36.2 4.1 58 277-337 87-148 (282)
436 PF08003 Methyltransf_9: Prote 35.1 24 0.00053 38.8 2.1 96 547-648 116-218 (315)
437 PF01555 N6_N4_Mtase: DNA meth 34.9 58 0.0013 31.7 4.6 32 308-339 191-224 (231)
438 TIGR00561 pntA NAD(P) transhyd 34.2 97 0.0021 36.3 6.8 93 309-407 164-281 (511)
439 COG2227 UbiG 2-polyprenyl-3-me 33.9 17 0.00037 38.6 0.7 93 550-649 63-161 (243)
440 PLN02178 cinnamyl-alcohol dehy 33.7 1.2E+02 0.0026 33.3 7.2 91 309-411 179-274 (375)
441 PRK10742 putative methyltransf 33.6 84 0.0018 33.7 5.7 40 311-352 91-132 (250)
442 PF01739 CheR: CheR methyltran 33.6 7.9 0.00017 39.4 -1.8 55 595-652 124-178 (196)
443 KOG4300 Predicted methyltransf 33.6 10 0.00023 39.8 -0.9 43 606-652 143-185 (252)
444 COG2521 Predicted archaeal met 33.5 15 0.00032 39.3 0.2 130 546-684 134-286 (287)
445 cd08261 Zn_ADH7 Alcohol dehydr 33.2 1.8E+02 0.0039 30.5 8.2 90 309-410 160-258 (337)
446 cd08239 THR_DH_like L-threonin 33.0 1.5E+02 0.0033 31.1 7.7 91 309-411 164-263 (339)
447 cd05278 FDH_like Formaldehyde 33.0 1.1E+02 0.0024 32.1 6.5 89 309-410 168-267 (347)
448 PRK10611 chemotaxis methyltran 32.8 12 0.00026 40.4 -0.7 45 606-652 221-265 (287)
449 PF05430 Methyltransf_30: S-ad 32.5 1.5E+02 0.0032 28.2 6.7 54 391-451 71-124 (124)
450 COG2242 CobL Precorrin-6B meth 32.3 66 0.0014 33.1 4.5 115 537-668 27-156 (187)
451 COG1568 Predicted methyltransf 32.1 2.2E+02 0.0047 31.6 8.5 119 309-433 153-284 (354)
452 PRK13699 putative methylase; P 31.7 89 0.0019 32.4 5.5 32 308-339 163-196 (227)
453 TIGR02825 B4_12hDH leukotriene 31.6 2.4E+02 0.0052 29.5 8.8 90 309-411 139-238 (325)
454 PLN03154 putative allyl alcoho 31.4 1.8E+02 0.0039 31.4 8.0 90 309-411 159-259 (348)
455 KOG0024 Sorbitol dehydrogenase 31.2 98 0.0021 34.7 5.9 91 308-411 169-274 (354)
456 KOG2651 rRNA adenine N-6-methy 30.3 88 0.0019 35.8 5.4 30 308-337 153-185 (476)
457 KOG1098 Putative SAM-dependent 29.9 62 0.0013 38.9 4.3 32 308-339 44-80 (780)
458 COG0270 Dcm Site-specific DNA 29.9 3.2E+02 0.007 29.7 9.6 116 309-431 3-141 (328)
459 cd00401 AdoHcyase S-adenosyl-L 29.7 2.4E+02 0.0052 32.2 8.9 86 308-412 201-291 (413)
460 PF02527 GidB: rRNA small subu 29.4 48 0.0011 33.5 3.1 136 523-669 26-171 (184)
461 cd08285 NADP_ADH NADP(H)-depen 28.5 2.7E+02 0.0058 29.6 8.6 89 309-410 167-266 (351)
462 COG4122 Predicted O-methyltran 28.4 54 0.0012 34.3 3.2 130 545-685 58-218 (219)
463 COG4301 Uncharacterized conser 27.7 1.6E+02 0.0035 32.1 6.6 102 309-411 79-194 (321)
464 PF13051 DUF3912: Protein of u 27.4 17 0.00037 30.8 -0.4 16 586-601 50-66 (68)
465 PLN02740 Alcohol dehydrogenase 27.2 2.3E+02 0.005 30.9 8.0 91 309-411 199-301 (381)
466 PRK03612 spermidine synthase; 27.1 65 0.0014 37.4 3.9 115 546-669 297-440 (521)
467 PF01795 Methyltransf_5: MraW 26.8 1E+02 0.0022 34.0 5.1 55 308-380 20-78 (310)
468 PLN02827 Alcohol dehydrogenase 25.9 2.6E+02 0.0057 30.5 8.2 91 309-411 194-296 (378)
469 TIGR00006 S-adenosyl-methyltra 24.2 1.2E+02 0.0025 33.4 5.0 39 309-352 21-63 (305)
470 TIGR00479 rumA 23S rRNA (uraci 24.2 43 0.00092 37.5 1.7 113 548-670 294-417 (431)
471 PLN02585 magnesium protoporphy 24.0 49 0.0011 36.1 2.1 72 548-622 146-226 (315)
472 COG0287 TyrA Prephenate dehydr 24.0 2E+02 0.0043 31.1 6.6 87 310-406 4-94 (279)
473 PRK10309 galactitol-1-phosphat 23.5 3.1E+02 0.0067 29.1 8.0 89 309-411 161-261 (347)
474 PRK05476 S-adenosyl-L-homocyst 22.3 5.4E+02 0.012 29.6 9.9 87 309-414 212-303 (425)
475 KOG1501 Arginine N-methyltrans 22.1 1.6E+02 0.0034 34.5 5.5 29 310-338 68-99 (636)
476 KOG0350 DEAD-box ATP-dependent 21.5 42 0.00092 39.3 1.1 8 613-620 540-547 (620)
477 KOG2730 Methylase [General fun 21.4 55 0.0012 34.9 1.8 31 309-339 95-127 (263)
478 PRK11933 yebU rRNA (cytosine-C 21.1 92 0.002 36.0 3.6 106 541-648 110-241 (470)
479 cd08241 QOR1 Quinone oxidoredu 21.0 4.9E+02 0.011 26.2 8.5 88 309-410 140-238 (323)
480 KOG1562 Spermidine synthase [A 20.9 1.6E+02 0.0035 32.7 5.1 99 308-411 121-237 (337)
481 cd08236 sugar_DH NAD(P)-depend 20.8 3.7E+02 0.0081 28.2 7.9 91 309-411 160-259 (343)
482 PF07021 MetW: Methionine bios 20.8 33 0.00071 35.3 0.0 91 549-648 16-108 (193)
483 cd08294 leukotriene_B4_DH_like 20.8 3.6E+02 0.0078 27.9 7.7 89 309-410 144-241 (329)
484 PF02254 TrkA_N: TrkA-N domain 20.5 5.9E+02 0.013 22.4 9.1 85 317-412 4-98 (116)
485 PF06080 DUF938: Protein of un 20.5 25 0.00054 36.5 -0.9 94 549-648 28-140 (204)
486 PF01596 Methyltransf_3: O-met 20.5 2E+02 0.0043 29.6 5.5 132 545-685 44-205 (205)
487 TIGR00853 pts-lac PTS system, 20.4 1.5E+02 0.0034 26.7 4.2 75 310-407 4-78 (95)
488 cd08295 double_bond_reductase_ 20.3 4.5E+02 0.0098 27.7 8.4 88 308-410 151-251 (338)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=6.7e-165 Score=1337.00 Aligned_cols=481 Identities=49% Similarity=0.964 Sum_probs=458.7
Q ss_pred CcccCCCchhhccC---CccccccccCCCC--CCCCccccCCCCCCCCCCCCChhhhhhccccCCChhhhhhhcccccee
Q 044932 196 NYIPCIDNESGFGK---FQSYRHTERSCPR--SHLMCLVPLPHAGYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLV 270 (689)
Q Consensus 196 ~y~PC~D~~~~~~~---~~~~~~~ER~Cp~--~~~~Clvp~P~~~y~~P~pWP~srd~~W~~Nvp~~~L~~~k~~q~W~~ 270 (689)
|||||+|+.+++++ +.+++|||||||+ ++++||||+|+ +|+.|++||+|||++||+|+||++|+++|++|||++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~-gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~ 79 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPK-GYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVR 79 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCc-cCCCCCCCCcccceeeecccCchHHhhhccccccee
Confidence 79999999999976 4667899999999 68999999999 999999999999999999999999999999999999
Q ss_pred ccCceeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHH
Q 044932 271 ESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVAL 350 (689)
Q Consensus 271 ~~g~~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~ 350 (689)
++|++|.|||||++|++||++|+++|.+++|.+.+++.+|++||+|||+|+||++|++++|++|+++|.|.+++++|+|+
T Consensus 80 ~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal 159 (506)
T PF03141_consen 80 VEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL 159 (506)
T ss_pred ecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh
Confidence 99999999999999999999999999999996567778999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc-------hhHHHHHHH
Q 044932 351 ERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS-------IEEEEALTT 423 (689)
Q Consensus 351 eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~-------le~~~~ie~ 423 (689)
+||++++++++++++||||+++||+|||++|+++|+.+.+.+|.|++|||||||||+++.|+.+ ...|..|+.
T Consensus 160 eRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~ 239 (506)
T PF03141_consen 160 ERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMED 239 (506)
T ss_pred hcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999866 246789999
Q ss_pred HHHhcceeEEEeeccccCceeEEEEEeCCCchhHhhhhC-CCCCCCCCCCCCCCccccccccccccCCccccccCCCCCC
Q 044932 424 LTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRK-KNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPE 502 (689)
Q Consensus 424 La~~l~W~~v~~~~~~~g~~~i~IwqKp~~~~cy~~r~~-~~p~~C~~~~d~d~~Wy~~l~~Ci~~~p~~~~~~~~~~~~ 502 (689)
++++|||++++++.+ ++|||||.+++||.+|+. +.||+|+.++|||++||++|++||||+|+..+..+++|++
T Consensus 240 l~~~lCW~~va~~~~------~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~ 313 (506)
T PF03141_consen 240 LAKSLCWKKVAEKGD------TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLP 313 (506)
T ss_pred HHHHHHHHHheeeCC------EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCC
Confidence 999999999998877 899999999999999986 8999999899999999999999999999987777888999
Q ss_pred CCccccccCCCccCc-------hhhhhhhhHHHHHHHHHhh-hcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEe
Q 044932 503 EWPKRLETYPDWLND-------KEKLSSDTRHWKAIVDRSY-LTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNV 574 (689)
Q Consensus 503 ~wP~Rl~~~p~rl~~-------~e~f~~D~~~W~~~v~~~y-~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNv 574 (689)
+||+||+++|+||.+ .+.|.+||++|+++|++|| +..+.+++++||||||||||||||||||+++|||||||
T Consensus 314 ~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNV 393 (506)
T PF03141_consen 314 KWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNV 393 (506)
T ss_pred CChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEe
Confidence 999999999999985 7999999999999999755 33456999999999999999999999999999999999
Q ss_pred ccCCCCCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhH
Q 044932 575 VPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEIL 654 (689)
Q Consensus 575 vp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l 654 (689)
||+.++|||+|||||||||+||||||+|||||||||||||+||||.|++||+| +||||||||||||||++||||++++|
T Consensus 394 VP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~-~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 394 VPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM-EDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred cccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH-HHHHHHhHhhcCCCceEEEeccHHHH
Confidence 99999999999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred HHHHHHHhhcceeEEEeecCC----CceEEEEEe
Q 044932 655 DPLEGILRSLHWEIRMTYAQD----KEGILCAQK 684 (689)
Q Consensus 655 ~~v~~i~~~lrW~~~~~~~~~----~E~iL~~~K 684 (689)
++|++|+++|||+++++++++ +||||||+|
T Consensus 473 ~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 473 EKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999998876 799999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.90 E-value=5.8e-24 Score=233.74 Aligned_cols=205 Identities=26% Similarity=0.451 Sum_probs=165.5
Q ss_pred CCccccCCCC----CCCCCCCCChhhhhhccccCCChhhhhhhccccceeccCceeecCCCCcccchhHHHHHHHHHhhc
Q 044932 225 LMCLVPLPHA----GYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMV 300 (689)
Q Consensus 225 ~~Clvp~P~~----~y~~P~pWP~srd~~W~~Nvp~~~L~~~k~~q~W~~~~g~~~~Fpgggt~F~~ga~~Yid~L~~~L 300 (689)
..||+++|.. +...+.+||+|+ ++++++|...... .-....|..+...|+..+.+|...+.-
T Consensus 294 ~~Cit~~p~~~~~~~~~~~~~WP~RL------~~~P~rl~~~~~~------g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~-- 359 (506)
T PF03141_consen 294 EACITPLPEVSSEIAGGWLPKWPERL------NAVPPRLSSGSIP------GISPEEFKEDTKHWKKRVSHYKKLLGL-- 359 (506)
T ss_pred hhhcCcCCcccccccccCCCCChhhh------ccCchhhhcCCcC------CCCHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 7899999984 467899999999 7788888752211 112457888999999999999876652
Q ss_pred ccccCCCCCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 301 PDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 301 p~l~~G~~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
.+.++ .+|+||||++|+|+|||+|.+..|++|++.|.. ..+.+.++++||+.++++... +.+++-+++||+||+..
T Consensus 360 -~i~~~-~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIydRGLIG~yhDWC-E~fsTYPRTYDLlHA~~ 435 (506)
T PF03141_consen 360 -AIKWG-RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYDRGLIGVYHDWC-EAFSTYPRTYDLLHADG 435 (506)
T ss_pred -ccccc-ceeeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhhcccchhccchh-hccCCCCcchhheehhh
Confidence 24565 799999999999999999999999999999984 468999999999999998652 45654349999999875
Q ss_pred ccccccc--cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc--cCceeEEEEEe
Q 044932 381 CSITWHA--HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE--ISEMGVKIYQK 450 (689)
Q Consensus 381 cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~--~g~~~i~IwqK 450 (689)
.+..|.. +...+|.||+|||||||+++|++...++.. ++.++++|+|+....+.+. .+.+.|+++||
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~---v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEK---VKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHH---HHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 4333321 346899999999999999999999887765 8899999999998777765 34688999997
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=6.4e-17 Score=165.81 Aligned_cols=138 Identities=21% Similarity=0.236 Sum_probs=107.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC-----cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP-----AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~-----~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
++.+|||||||||.++..++.. .|+++|+++ .|+..|++|-.. ..+..++++.|||+|+|||+|+|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~-----~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE-----SMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCH-----HHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence 4679999999999999888753 489999875 688888887332 33456788999999999999999
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCC--C--------------------------------ch-------hH
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH--D--------------------------------SI-------EE 417 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~--~--------------------------------~l-------e~ 417 (689)
++.+ ++..|...+|+||+|||||||.+++.+.. . ++ ..
T Consensus 126 ~fgl-rnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~ 204 (238)
T COG2226 126 SFGL-RNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPD 204 (238)
T ss_pred eehh-hcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCC
Confidence 8654 45779999999999999999999987521 0 00 01
Q ss_pred HHHHHHHHHhcceeEEEeeccccCceeEEEEEeC
Q 044932 418 EEALTTLTASICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 418 ~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
++.+.......+|..+.....++|.+++.+.+|+
T Consensus 205 ~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 205 QEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238 (238)
T ss_pred HHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence 3467778888999988766666777778877774
No 4
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=2.8e-16 Score=173.06 Aligned_cols=300 Identities=16% Similarity=0.156 Sum_probs=157.4
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc-C-CC-cEEecCCC--CCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER-G-FP-AVVSPLGN--RRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR-G-L~-~i~~~~dt--~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.+..+ + .+ ..+...+. ..+||++++||+|+|..+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~-----~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIE-----SVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH-----HHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 468999999999999888864 589999876 455555432 1 11 22333343 357899999999999865
Q ss_pred ccccccc--HHHHHHHHHhccCCCcEEEEEcCC--------------CchhHHHHHHHHHHhcceeEEEeeccccCceeE
Q 044932 382 SITWHAH--GGKLLLEMNRILRPSGYFILSTKH--------------DSIEEEEALTTLTASICWNILAHKTDEISEMGV 445 (689)
Q Consensus 382 li~W~~d--~~~aL~EI~RVLRPGG~fVIsdp~--------------~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i 445 (689)
+.+ ..+ ...+|.++.|+|||||++++.+.. .++. ...+..+....++......... ..
T Consensus 113 l~~-l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~----~~ 186 (475)
T PLN02336 113 LMY-LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYRE-PRFYTKVFKECHTRDEDGNSFE----LS 186 (475)
T ss_pred HHh-CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecC-hHHHHHHHHHheeccCCCCEEE----EE
Confidence 544 333 468999999999999999997522 1111 2345566666666543221110 11
Q ss_pred EEEEeCCCchhHhhhhCCCCCCCCCCCCCCCccccccccccccCCccccccCCCCCCCCccccccCCCccCchhhhhhhh
Q 044932 446 KIYQKPESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDT 525 (689)
Q Consensus 446 ~IwqKp~~~~cy~~r~~~~p~~C~~~~d~d~~Wy~~l~~Ci~~~p~~~~~~~~~~~~~wP~Rl~~~p~rl~~~e~f~~D~ 525 (689)
...-++.+ -|.+.+.+..-+|.....-+..=...+..++.. +.-.++.|...+.|....
T Consensus 187 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~y~~~~i~~~~~f~g~~ 245 (475)
T PLN02336 187 LVGCKCIG--AYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDN-------------------VQYKSSGILRYERVFGEG 245 (475)
T ss_pred EEEeechh--hhhhccCCcceEEEEEEeecCCcchhHHHHhhh-------------------hccccccHHHHHHHhCCC
Confidence 22222221 233322222222321111010000222233321 111111121111111000
Q ss_pred HHHHHHHH--HhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc--cc---chh-hc
Q 044932 526 RHWKAIVD--RSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR--GL---VGI-YH 596 (689)
Q Consensus 526 ~~W~~~v~--~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R--GL---ig~-yh 596 (689)
-.+...|. ..++..+.++ .-..|+|+++|.|+++..|....-+ +|+=++-. .-|.+.-.+ |+ |-+ ..
T Consensus 246 ~~v~~~v~~te~l~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 246 FVSTGGLETTKEFVDKLDLK--PGQKVLDVGCGIGGGDFYMAENFDV--HVVGIDLSVNMISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred CCCCchHHHHHHHHHhcCCC--CCCEEEEEeccCCHHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence 00000000 1122222333 2357999999999998888764211 23333322 222221111 11 111 23
Q ss_pred cccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 597 DWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 597 dwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|+.+ .+..+.+||+|.+.++|-...+. ..+|-||-|+|+|||.++|.|
T Consensus 322 d~~~-~~~~~~~fD~I~s~~~l~h~~d~----~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 322 DCTK-KTYPDNSFDVIYSRDTILHIQDK----PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred Cccc-CCCCCCCEEEEEECCcccccCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence 4333 23234689999999888776543 457899999999999999875
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=5.1e-16 Score=158.23 Aligned_cols=97 Identities=23% Similarity=0.384 Sum_probs=69.9
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----CC-CcEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----GF-PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----GL-~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
.+.+|||+|||||.++..|+.. .|+++|+++ .|++.|.++ +. ...+...+++.|||+|++||+|+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~-----~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP-----GMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H-----HHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH-----HHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEE
Confidence 3569999999999998887653 488999875 678877765 33 33455678899999999999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|++.+.+ ..|...+|.|++|||||||+|+|.+
T Consensus 122 ~~fglrn-~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 122 CSFGLRN-FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EES-GGG--SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhHHh-hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 9876543 5688999999999999999999875
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=1.1e-15 Score=128.87 Aligned_cols=90 Identities=23% Similarity=0.396 Sum_probs=70.5
Q ss_pred EEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCCCCCCCCcceEEeccccccccc
Q 044932 313 LEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 313 LDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~ 387 (689)
||+|||+|.++..|+++ .|+++|+++ .+++.++++.... .+...+...+||++++||+|+|..++ +|..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~-~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVL-HHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHG-GGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCccccccccccccccce-eecc
Confidence 89999999999988876 388888764 6788888764332 25566788999999999999987655 4458
Q ss_pred cHHHHHHHHHhccCCCcEEEE
Q 044932 388 HGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 388 d~~~aL~EI~RVLRPGG~fVI 408 (689)
+...+|.|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 899999999999999999986
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=8.8e-15 Score=150.73 Aligned_cols=136 Identities=21% Similarity=0.141 Sum_probs=99.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcC-------C-CcEEecCCCCCCCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERG-------F-PAVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRG-------L-~~i~~~~dt~~LPFpD~SFD 374 (689)
...+|||+|||+|.++..|+.. .|+|+|+++ .|++.|.++. . ...+...+...+||++++||
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~-----~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS-----EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEe
Confidence 3568999999999988777642 589999876 5777776542 1 23355667789999999999
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--------c-------------------------------h
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--------S-------------------------------I 415 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--------~-------------------------------l 415 (689)
+|+|+.++ ++..++..+|.|+.|+|||||+|++.+... . +
T Consensus 148 ~V~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 148 AITMGYGL-RNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EEEEeccc-ccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 99987654 456789999999999999999999985220 0 0
Q ss_pred hHHHHHHHHHHhcceeEEEeeccccCceeEEEEE
Q 044932 416 EEEEALTTLTASICWNILAHKTDEISEMGVKIYQ 449 (689)
Q Consensus 416 e~~~~ie~La~~l~W~~v~~~~~~~g~~~i~Iwq 449 (689)
...+++..+++..+|+.+......++...+.+.+
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 0224677889999998877665555555555543
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=1.2e-12 Score=130.22 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=99.8
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..|+.. .|+++|+++. |++.|.++ ++. ..+...+...+||++++||+|++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN-----MLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEE
Confidence 468999999999998877642 5899998863 45444432 333 23344566778899999999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--ch--------------------------h------------HH
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--SI--------------------------E------------EE 418 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--~l--------------------------e------------~~ 418 (689)
... ++|..+...+|.++.|+|+|||++++.++.. .. . ..
T Consensus 121 ~~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (231)
T TIGR02752 121 GFG-LRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGM 199 (231)
T ss_pred ecc-cccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCH
Confidence 654 4667788899999999999999999876421 00 0 01
Q ss_pred HHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 419 EALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 419 ~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
.++..+++..+|..+......++..++.+.+|
T Consensus 200 ~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 200 DELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 45788899999998776666667777887776
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.46 E-value=2.3e-13 Score=137.74 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=81.3
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
...+|||+|||+|.++..|... .|+++|+++ .|++.|.++.....+...+...+||++++||+|+++. .++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhh
Confidence 3568999999999998888754 589999875 6788887775433345567788999999999999875 4578
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..++..+|.++.|+|||||+|+++...
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 889999999999999999999999754
No 10
>PRK05785 hypothetical protein; Provisional
Probab=99.46 E-value=7.1e-13 Score=134.15 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=94.7
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||||.++..|+.. .|+|+|+++ .|++.|.++. . ....+.+.+||++++||+|+|+..+ +|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~-----~Ml~~a~~~~-~--~~~~d~~~lp~~d~sfD~v~~~~~l-~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE-----NMLKMNLVAD-D--KVVGSFEALPFRDKSFDVVMSSFAL-HA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH-----HHHHHHHhcc-c--eEEechhhCCCCCCCEEEEEecChh-hc
Confidence 468999999999998888764 588998875 6888887763 2 2345668899999999999998754 66
Q ss_pred cccHHHHHHHHHhccCCCc-EEEEEcCCC------------------------------chh-------HHHHHHHHHHh
Q 044932 386 HAHGGKLLLEMNRILRPSG-YFILSTKHD------------------------------SIE-------EEEALTTLTAS 427 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG-~fVIsdp~~------------------------------~le-------~~~~ie~La~~ 427 (689)
..++..+|+|++|||||.+ .+.++.|.. ++. ..+++.++++.
T Consensus 123 ~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred cCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7899999999999999954 333333220 000 12456666666
Q ss_pred cceeEEEeeccccCceeEEEEEeC
Q 044932 428 ICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 428 l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
.+ ..+..+..++|.+++.+.+|.
T Consensus 203 ~~-~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 203 YA-DIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred Hh-CceEEEEccccEEEEEEEeeC
Confidence 42 445555667788888888774
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=5.9e-13 Score=135.60 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=77.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||||||+|.++..|+.. .|+|+|+++ .|++.|.++++.... .+...++ ++++||+|+|..+ +
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~~~~~~--~d~~~~~-~~~~fD~v~~~~~-l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERGVDART--GDVRDWK-PKPDTDVVVSNAA-L 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcCCcEEE--cChhhCC-CCCCceEEEEehh-h
Confidence 3578999999999998888753 589999875 688888887765443 4555664 5689999999754 5
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||..++..+|.++.|+|||||+|++..+.
T Consensus 100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 77889999999999999999999998654
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.42 E-value=1.3e-12 Score=139.68 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=77.6
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||||||+|.++..|+. ..|+|+|+++.+.. ...+.+.+.++. ..+...|...+||++++||+|+|..++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~-~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAA-RANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHH-HHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 457899999999999888875 36999999874221 112223334553 345667778899999999999997665
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.| ..+...+|.|+.|+|||||+|+|.+.
T Consensus 197 ~h-~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EH-MPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hc-cCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 44 56888999999999999999999764
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=1.6e-12 Score=134.22 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCC---CcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGF---PAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL---~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
+..+|||||||+|.++..|+. ..|+++|+++ .|++.|.++.. ...+...+...+||++++||+|++..+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~-----~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICE-----KMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCH-----HHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 356899999999998887764 3589999875 57777776522 233445666778999999999998766
Q ss_pred ccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++|+. .+...+|.++.|+|||||+|++.+.
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 65644 3778999999999999999999875
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.40 E-value=6.1e-13 Score=122.99 Aligned_cols=129 Identities=26% Similarity=0.523 Sum_probs=89.5
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCC
Q 044932 292 YLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFP 369 (689)
Q Consensus 292 Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFp 369 (689)
+.+.+..+++.+ ....+|||+|||+|.++..|... .|+++|+++. ++.. +.. .....+....+++
T Consensus 9 ~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~-----~~~~---~~~--~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPRL---KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQ-----MIEK---RNV--VFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTCT---TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHH-----HHHH---TTS--EEEEEECHTHHCH
T ss_pred HHHHHHHHhccc---CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH-----HHhh---hhh--hhhhhhhhhhhcc
Confidence 344454444322 14579999999999999888766 5889998763 3333 222 2222222345578
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch---------------------hHHHHHHHHHHhc
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI---------------------EEEEALTTLTASI 428 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l---------------------e~~~~ie~La~~l 428 (689)
+++||+|+|..+ ++|..++..+|.++.|+|||||+++++++.... ...+.+..+++..
T Consensus 76 ~~~fD~i~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 154 (161)
T PF13489_consen 76 DGSFDLIICNDV-LEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA 154 (161)
T ss_dssp SSSEEEEEEESS-GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred ccchhhHhhHHH-HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence 899999999854 566889999999999999999999999874210 0124677778887
Q ss_pred ceeEEE
Q 044932 429 CWNILA 434 (689)
Q Consensus 429 ~W~~v~ 434 (689)
+|+.+.
T Consensus 155 G~~iv~ 160 (161)
T PF13489_consen 155 GFEIVE 160 (161)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 777653
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=2.7e-12 Score=132.52 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=76.1
Q ss_pred CCCeEEEECCccchhHHHhhc----------CCeEEEEcCCcccHHHHHHHHHHc----CCCc----EEecCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA----------KEVLTLTVGLKDDLVDLAQVALER----GFPA----VVSPLGNRRLPFP 369 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----------~~V~gmDIsp~D~seamlq~A~eR----GL~~----i~~~~dt~~LPFp 369 (689)
...++|||+||||..|..+++ ..|+++||+|. |+..+.+| ++.. .+...|++.|||+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~-----mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH-----MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH-----HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 458999999999998877763 24899999874 55555444 4433 2445689999999
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|++||+.+.++..-. ..++.++|+|++|||||||+|.+.+
T Consensus 175 d~s~D~yTiafGIRN-~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRN-VTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEecceec-CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999998765444 4478899999999999999999875
No 16
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.36 E-value=2.7e-12 Score=132.48 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCeEEEECCccchhHHHhhcC-------CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK-------EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-------~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..|+.. .|+|+|+++ .|++.|.++.....+.+.+...+||++++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 467999999999998877642 378888875 68888877754455566677889999999999997542
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+ ..+.|+.|+|||||+|++..+..
T Consensus 161 --~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 --P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred --C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 2 35789999999999999988764
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.36 E-value=2.8e-12 Score=136.86 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=77.0
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
..+|||||||+|.++..|+.. .|+|+|+++ .|++.|+++ ++ ...+...+.+.+|+++++||+|+|..
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~-----~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVD-----KNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 468999999999999888764 589999876 466666543 21 23344556678898889999999976
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++ ++..++..+|.++.|+|||||.|+|++..
T Consensus 207 vL-eHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 207 VI-EHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HH-HhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 54 55778999999999999999999998643
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=9.5e-12 Score=126.98 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCCC-CCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRRL-PFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~L-PFpD~SFDlVhc 378 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++ |+. ..+...+...+ ++++++||+|+|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~-----~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSA-----EMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCH-----HHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 3568999999999999888865 488999876 455555543 442 23344454555 367799999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..+ ++|..++..+|.++.|+|||||+|++..
T Consensus 119 ~~v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 119 HAV-LEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhH-HHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 754 4567789999999999999999998864
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=2e-11 Score=123.88 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .|++.|.++.-...+...+...++ ++++||+|+|+.+ +
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~-----~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP-----AMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-L 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-h
Confidence 357899999999999888774 3599999875 578888776433334445555554 4579999998764 5
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhcceeE
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASICWNI 432 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l~W~~ 432 (689)
+|..+...+|.++.|+|||||+|++..+.... .....+.+++....|..
T Consensus 104 ~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 77888999999999999999999998654321 12223555555555654
No 20
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.31 E-value=1.3e-11 Score=121.88 Aligned_cols=124 Identities=14% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||+|||+|.++.+|+.+ .|+++|+++.... ...+.+...++.......+...++++ ++||+|+|+.++.+..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~-~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIA-SVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHH-HHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 358999999999999888865 5999999874221 12223344566544444454455665 6899999876543322
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEc-----------CCCchhHHHHHHHHHHhcceeEEEee
Q 044932 387 -AHGGKLLLEMNRILRPSGYFILST-----------KHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 387 -~d~~~aL~EI~RVLRPGG~fVIsd-----------p~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
.+...++.+++|+|+|||++++.. +.+++....++.+++. .|+.+...
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 345689999999999999966542 1123334455666665 47776553
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=1.8e-11 Score=121.12 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=80.2
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||+|.++.+|+.+ .|+++|+++..+. ...+.+...++. ......+...++++ ++||+|+|..++ +|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~-~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~-~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIA-NLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL-MF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch-hh
Confidence 358999999999999999875 5899999874221 112223334554 23344555566675 689999998654 33
Q ss_pred cc--cHHHHHHHHHhccCCCcEEEEEc-C----------CCchhHHHHHHHHHHhcceeEEEe
Q 044932 386 HA--HGGKLLLEMNRILRPSGYFILST-K----------HDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 386 ~~--d~~~aL~EI~RVLRPGG~fVIsd-p----------~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
.. +...++.++.|+|||||++++.. . +.+.....++.+++. +|..+..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 32 45789999999999999965532 1 112223345666665 7887654
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=3.3e-11 Score=133.10 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=76.7
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc--CC--CcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER--GF--PAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR--GL--~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||||||+|.++..|+. ..|+|+|+++ .|+..|.++ +. ...+...+...+||++++||+|+|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~-----~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV-----NMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCH-----HHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 356899999999998877764 3589999875 466666554 22 23455667777889999999999876
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++. |..++..+|.+++|+|||||+|++.+.
T Consensus 341 ~l~-h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 341 TIL-HIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccc-ccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 554 467899999999999999999999864
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=1.4e-11 Score=131.25 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred HHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH-c--CCCcEEecCCCCCCC
Q 044932 294 ESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE-R--GFPAVVSPLGNRRLP 367 (689)
Q Consensus 294 d~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e-R--GL~~i~~~~dt~~LP 367 (689)
+.+...++.+ ..++|||||||+|.++.+|+.. .|+|+|.++.+.. +.+.... . .....+...+...+|
T Consensus 112 ~~l~~~l~~l----~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~--q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 112 DRVLPHLSPL----KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLC--QFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred HHHHHhhCCC----CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH--HHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 4445455433 3479999999999999888764 3889997764221 1111111 1 123445556778889
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+ +++||+|+|..++. +..++..+|.+++|+|+|||.|++.+
T Consensus 186 ~-~~~FD~V~s~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLY-HRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 78999999976654 46788999999999999999999874
No 24
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=1e-10 Score=115.98 Aligned_cols=132 Identities=20% Similarity=0.135 Sum_probs=91.4
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..++. ..|+++|+++.... ...+.+.+.++. ..+...+...+++ +++||+|+|.. .
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~-~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIA-FLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHH-HHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c-
Confidence 46899999999988776653 35999998764221 112223334554 3344555566666 68999999753 1
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeecccc----CceeEEEEEe
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEI----SEMGVKIYQK 450 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~----g~~~i~IwqK 450 (689)
.+...++.++.|+|||||+|++....... ..+.+++..++|.+..+...++ ++-++.|.||
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 25668999999999999999999766433 3488889999999766554432 3455777776
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.24 E-value=3.7e-11 Score=112.98 Aligned_cols=98 Identities=19% Similarity=0.353 Sum_probs=76.7
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCC--CCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLP--FPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LP--FpD~SFDl 375 (689)
...+|||+|||+|.++..|+. ..++++|+++ .|++.|.. .++. ..+...+...++ |+ +.||+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~-----~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE-----EMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH-----HHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH-----HHHHHhhcccccccccccceEEeehhccccccC-CCeeE
Confidence 356899999999999888872 3599999986 45555554 4665 445566666677 77 89999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|++...+ ++..++..+|.++.|+|++||.+++.+..
T Consensus 77 I~~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVL-HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCch-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9987554 56778889999999999999999999876
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.24 E-value=6.2e-11 Score=116.05 Aligned_cols=111 Identities=24% Similarity=0.353 Sum_probs=81.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPL 361 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~ 361 (689)
.|.+.+...+. +. ...+|||+|||+|.++..++. ..|+++|+++ .+++.|.++ +....+...
T Consensus 6 ~~~~~~~~~~~-~~---~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~-----~~~~~a~~~~~~~~~~~~~~~~ 76 (241)
T PRK08317 6 RYRARTFELLA-VQ---PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE-----AMLALAKERAAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHcC-CC---CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH-----HHHHHHHHHhhCCCCceEEEec
Confidence 44555555544 22 357899999999998877764 2588999876 456666554 222334455
Q ss_pred CCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+...+|+++++||+|++..++ ++..++..+|.++.++|+|||++++.++
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVL-QHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ccccCCCCCCCceEEEEechh-hccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 667788999999999987654 4466889999999999999999999875
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.24 E-value=3e-11 Score=106.44 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=67.6
Q ss_pred CCeEEEECCccchhHHHhhc--C--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCC-CCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA--K--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGN-RRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~--~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt-~~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++.+|+. . .|+++|++|. +++.|.++ +. ...+...+. ....+. ..||+|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPE-----MLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHH-----HHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEE
Confidence 36899999999999888876 3 5999999874 44444443 22 233444444 333344 5699999
Q ss_pred ecc-cccccc--ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDG-CSITWH--AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~-cli~W~--~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.. +..++. ++...+|..+.+.|+|||+|+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 987 332221 356788999999999999999975
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.23 E-value=6.1e-11 Score=116.56 Aligned_cols=98 Identities=23% Similarity=0.344 Sum_probs=76.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..|+.. .++++|+++ .++..+..+..+ ..+...+...+|+++++||+|+|..+ +
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-L 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-h
Confidence 468999999999998887753 478888865 566666665322 23445566788899999999998754 4
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|..++..+|.++.|+|+|||+|++..+.
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 67778999999999999999999998754
No 29
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.23 E-value=2.1e-11 Score=125.23 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=80.6
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
...+|||||||.|.++..|+.. .|+|+|+++..+.. ....|.+.|+...+....++.|-...++||+|+|..++.|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~-Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH- 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEV-AKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH- 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHH-HHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc-
Confidence 3568999999999999888865 59999987643321 1223344566655655555666665689999999877655
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
.+++..+++...+.|||||.+++++....+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 889999999999999999999999977443
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.23 E-value=7e-11 Score=125.91 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc-C--CCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER-G--FPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR-G--L~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..++|||||||+|.++..++.. .|+|+|.++.+. .+.+.+... + ....+...+...+|+. .+||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml--~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL--CQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH--HHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 3579999999999988777654 378888776322 111222221 1 1223344556677765 58999999876
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCC-----------C--c--------hhHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKH-----------D--S--------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-----------~--~--------le~~~~ie~La~~l~W~~v~~ 435 (689)
+.| ..++..+|.+++|+|||||.|++.+.. . + +.....+..++++.||+.+..
T Consensus 198 L~H-~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 198 LYH-RKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI 271 (314)
T ss_pred hhc-cCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence 655 578899999999999999999987421 0 0 012346778888889987643
No 31
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.22 E-value=7.1e-11 Score=127.14 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=88.2
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcC--CCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERG--FPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRG--L~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||||||+|.++..++. ..|+++|+++ .|++.|.++. ....+...+...+||++++||+|++...
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~-----~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP-----HQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 346899999999998776653 3588999875 5666666542 1122345566788999999999998754
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCC--c------------hhHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHD--S------------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--~------------le~~~~ie~La~~l~W~~v~~ 435 (689)
+ ++..++..+|.|+.|+|||||++++..+.. . ....+++.++++..+|+.+..
T Consensus 188 L-~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 188 I-EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred h-hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 4 545678899999999999999998875421 1 012356778888888887654
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.19 E-value=1.2e-10 Score=121.57 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=82.0
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc-
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH- 386 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~- 386 (689)
.+|||+|||+|.++.+|+.. .|+++|+++..+ ..+.+.+...++.......+....++ +++||+|+|..++.+..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai-~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSL-ENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 48999999999999888764 599999987422 22233444556654444455444455 58999999876543322
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcC-----------CCchhHHHHHHHHHHhcceeEEEe
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTK-----------HDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp-----------~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
++...+|.++.|+|+|||++++... ...+....++.++... |+.+..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 2456899999999999999766421 1222344567777764 887754
No 33
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.18 E-value=4.7e-10 Score=110.71 Aligned_cols=137 Identities=20% Similarity=0.271 Sum_probs=96.3
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++..++. ..++++|+++ .+++.+.++ ++ ...+...+...+++++++||+|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE-----GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH-----HHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 46899999999998776653 4588999876 345555443 12 23344556667788888999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--c--h------------------------------------hH
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--S--I------------------------------------EE 417 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--~--l------------------------------------e~ 417 (689)
++.++ ++..++..+|.++.++|+|||++++.+... . . ..
T Consensus 127 ~~~~l-~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (239)
T PRK00216 127 IAFGL-RNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPD 205 (239)
T ss_pred Eeccc-ccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCC
Confidence 87554 445678899999999999999998864310 0 0 01
Q ss_pred HHHHHHHHHhcceeEEEeeccccCceeEEEEEeC
Q 044932 418 EEALTTLTASICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 418 ~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
...+..+++..+|+.+.......+-..+.+.+||
T Consensus 206 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 206 QEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 1347778888999887766655566667777775
No 34
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.18 E-value=1.7e-11 Score=107.71 Aligned_cols=88 Identities=27% Similarity=0.500 Sum_probs=66.7
Q ss_pred EEEECCccchhHHHhhc-------CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 312 VLEIGSADLSFVASLLA-------KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 312 VLDVGCGtGsfaa~La~-------~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
|||+|||+|..+..++. ..++++|+++ .|+..|.++ ++...+...|...+|+.+++||+|+|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~-----~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP-----EMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H-----HHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH-----HHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcC
Confidence 79999999998877663 3588999875 577777665 4677777888888999999999999976
Q ss_pred cccccc--ccHHHHHHHHHhccCCCc
Q 044932 381 CSITWH--AHGGKLLLEMNRILRPSG 404 (689)
Q Consensus 381 cli~W~--~d~~~aL~EI~RVLRPGG 404 (689)
+.+++. .....+|.++.++|||||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 644433 245789999999999998
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.17 E-value=8.8e-11 Score=120.50 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=73.3
Q ss_pred CCCeEEEECCccchhHHHhh---cC--CeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLL---AK--EVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~--~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..++ .. .|+++|+++ .|++.|+++ ++.. .+...+...+||++++||+|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~-----~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP-----EMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH-----HHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEE
Confidence 35799999999997654333 22 489999876 456665543 4432 334456678899999999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+. +.+++..+...+|.|+.|+|||||+|++++.
T Consensus 152 ~~-~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 152 SN-CVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred Ec-CcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 76 4556677888999999999999999999763
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.15 E-value=1.2e-10 Score=120.85 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=71.6
Q ss_pred CCCeEEEECCccch----hHHHhhc---------CCeEEEEcCCcccHHHHHHHHHHc--------CCC-----------
Q 044932 308 NIRVVLEIGSADLS----FVASLLA---------KEVLTLTVGLKDDLVDLAQVALER--------GFP----------- 355 (689)
Q Consensus 308 ~~R~VLDVGCGtGs----faa~La~---------~~V~gmDIsp~D~seamlq~A~eR--------GL~----------- 355 (689)
...+|||+|||||. +|..|++ ..|+|+|+++ .|++.|++. +++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~-----~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL-----KALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH-----HHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 34689999999995 4444432 2488999876 577777653 111
Q ss_pred -------------cEEecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 356 -------------AVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 356 -------------~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..+...+...+|+++++||+|+|..+++++. ++...+|.+++|+|+|||+|++....
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 2234556667778889999999987666543 24458999999999999999997654
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.15 E-value=6.3e-10 Score=109.48 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=79.0
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..|+. ..|+++|+++.+.. ...+.+.+.++. ..+...+...++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~-~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVA-FLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHH-HHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 46899999999988776652 35999998874321 111222334554 3344555556543 57999998753 2
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeecc
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTD 438 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~ 438 (689)
+ +...++..+.|+|+|||.+++........+...+.+-+...+.+.+..+.-
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 2 455788999999999999999876655444333333444466666655443
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.15 E-value=5e-10 Score=109.41 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=72.7
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..++.. .++++|+++ .++..+.++. ....+...+...+|+++++||+|+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~-----~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~ 113 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS-----EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIA 113 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH-----HHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEe
Confidence 3578999999999988777642 588888875 4555555542 12334455666788888899999987
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..+ ++..++..+|.++.++|+|||++++.+
T Consensus 114 ~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 114 FGL-RNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eee-CCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 543 445678899999999999999999865
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.13 E-value=2.7e-10 Score=114.02 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=75.7
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC
Q 044932 292 YLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP 367 (689)
Q Consensus 292 Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP 367 (689)
++..+.+.+..+. ...+|||+|||+|.++..|+.. .++|+|+++ .|++.|+++.....+...+... |
T Consensus 30 ~~~~~~~~l~~~~---~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~~~~~~~~~d~~~-~ 100 (204)
T TIGR03587 30 KLAMFARALNRLP---KIASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYLPNINIIQGSLFD-P 100 (204)
T ss_pred HHHHHHHHHHhcC---CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhCCCCcEEEeeccC-C
Confidence 3444444443222 3468999999999988877643 489999875 5788887753222333444445 8
Q ss_pred CCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|++++||+|+|..++.|+. .+...++.|+.|++ +++++|.+
T Consensus 101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999999999987766643 24578999999998 57888875
No 40
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.13 E-value=1.8e-10 Score=116.34 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCCeEEEECCccchhHHHhhc------CCeEEEEcCCcccHHHHHHHHHHc----C--CCcEEecCCCCCCCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA------KEVLTLTVGLKDDLVDLAQVALER----G--FPAVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~------~~V~gmDIsp~D~seamlq~A~eR----G--L~~i~~~~dt~~LPFpD~SFDl 375 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .|+..|.++ + ....+...+...+|++ .||+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~-----~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ-----PMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH-----HHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCE
Confidence 346899999999998877654 2489999876 466666553 2 2234555666777776 5899
Q ss_pred EEeccccccccc--cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHA--HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|...+ ||.. +...+|.++.|+|+|||.|+++++.
T Consensus 126 v~~~~~l-~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 126 VILNFTL-QFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred Eeeecch-hhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 9887654 4442 4578999999999999999999763
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.13 E-value=3.9e-10 Score=111.93 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=82.3
Q ss_pred eEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCCCCCCCCCcceEEecc
Q 044932 311 VVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
+|||||||+|.++..++. ..|+++|+++ .++..|.+ .|+.. .+...+....|++ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~-----~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISP-----EQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHH
Confidence 699999999998877764 3588999876 45555544 34432 3334455555776 5899999865
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCC-------------chhHHHHHHHHHHhcceeEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHD-------------SIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~-------------~le~~~~ie~La~~l~W~~v~~ 435 (689)
++ ++..+...+|.++.|+|||||+|++.+... +......+..++...++..+..
T Consensus 76 ~l-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 76 VI-HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HH-HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 44 445678899999999999999999986421 0112245667777788877643
No 42
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=117.63 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=80.1
Q ss_pred cchhHHHHHHHHHhhcccc--cCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcE-E
Q 044932 285 FKGGVLHYLESIEEMVPDI--EWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAV-V 358 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l--~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i-~ 358 (689)
+...++.|...|-.-+-.+ +.+ -..||+||||||..-.++-. ..|+.+|-++.+..-+...++..+-+... +
T Consensus 53 yne~~~~ykrelFs~i~~~~gk~~--K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~f 130 (252)
T KOG4300|consen 53 YNEIADSYKRELFSGIYYFLGKSG--KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERF 130 (252)
T ss_pred HHHHHHHHHHHHHhhhHHHhcccC--ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEE
Confidence 4455667755443321111 122 23589999999975545442 24666665554322111122222333333 4
Q ss_pred ecCCCCCCC-CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 359 SPLGNRRLP-FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 359 ~~~dt~~LP-FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+++.+.|| ++|+|+|.|+|..|+-. +.++.+.|.|+.|+|||||++++....
T Consensus 131 vva~ge~l~~l~d~s~DtVV~TlvLCS-ve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 131 VVADGENLPQLADGSYDTVVCTLVLCS-VEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeechhcCcccccCCeeeEEEEEEEec-cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 466778999 89999999999865433 569999999999999999999998765
No 43
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.12 E-value=1.7e-10 Score=115.34 Aligned_cols=103 Identities=23% Similarity=0.291 Sum_probs=81.1
Q ss_pred HHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-CC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC-CC
Q 044932 294 ESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-KE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP-FP 369 (689)
Q Consensus 294 d~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP-Fp 369 (689)
+.|.++++ +..+|||+|||.|.+.++|.+ ++ ..|+++++ +.+..+.+||++.+.+.++. .|+ |+
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~-----~~v~~cv~rGv~Viq~Dld~-gL~~f~ 72 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP-----DNVAACVARGVSVIQGDLDE-GLADFP 72 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH-----HHHHHHHHcCCCEEECCHHH-hHhhCC
Confidence 45666665 347899999999999999986 44 56677654 56888899999988877664 454 99
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|++||.|+++..+-+ ..+|..+|.||.|| |...+++-|.
T Consensus 73 d~sFD~VIlsqtLQ~-~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 73 DQSFDYVILSQTLQA-VRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred CCCccEEehHhHHHh-HhHHHHHHHHHHHh---cCeEEEEecC
Confidence 999999999876654 56889999999888 6688888776
No 44
>PRK06922 hypothetical protein; Provisional
Probab=99.10 E-value=2.3e-10 Score=131.33 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCC--CCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLP--FPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LP--FpD~SFDlVhc 378 (689)
..+|||+|||+|.++..|+. ..|+|+|+++ .|++.|.++ +....+...+...+| |++++||+|++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~-----~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE-----NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 46899999999998776653 3699999886 456665543 333334445666777 88999999998
Q ss_pred cccccccc------------ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWH------------AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~------------~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.++.+|. .+...+|.++.|+|||||+|++.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 75443331 2457899999999999999999874
No 45
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.10 E-value=5.2e-10 Score=118.56 Aligned_cols=142 Identities=22% Similarity=0.291 Sum_probs=99.1
Q ss_pred cccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHc-CCCcEE
Q 044932 283 SEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALER-GFPAVV 358 (689)
Q Consensus 283 t~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eR-GL~~i~ 358 (689)
+.|..... ++.|...++.+ .+++|||||||.|.++.+|+.++ |+|+|-++. .-.+-.++.+- |....+
T Consensus 96 tEWrSd~K--W~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~ 167 (315)
T PF08003_consen 96 TEWRSDWK--WDRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPV 167 (315)
T ss_pred ccccccch--HHHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccE
Confidence 45544443 56677777655 46899999999999999998764 777765542 22222222221 222222
Q ss_pred --ecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC------------CC---------ch
Q 044932 359 --SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK------------HD---------SI 415 (689)
Q Consensus 359 --~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp------------~~---------~l 415 (689)
..++.+.||. .++||+|+|.++++| ..+|-..|.++...|||||.+++.+- .. ++
T Consensus 168 ~~lplgvE~Lp~-~~~FDtVF~MGVLYH-rr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi 245 (315)
T PF08003_consen 168 FELPLGVEDLPN-LGAFDTVFSMGVLYH-RRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI 245 (315)
T ss_pred EEcCcchhhccc-cCCcCEEEEeeehhc-cCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence 2356788888 689999999988877 78999999999999999999998642 10 01
Q ss_pred hHHHHHHHHHHhcceeEEE
Q 044932 416 EEEEALTTLTASICWNILA 434 (689)
Q Consensus 416 e~~~~ie~La~~l~W~~v~ 434 (689)
.....+...+++.+|+.+.
T Consensus 246 Ps~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 246 PSVAALKNWLERAGFKDVR 264 (315)
T ss_pred CCHHHHHHHHHHcCCceEE
Confidence 2346788999999998764
No 46
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.09 E-value=3.7e-10 Score=115.28 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCeEEEECCccchhHHHhhc------CCeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA------KEVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~------~~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDl 375 (689)
...+|||||||+|.++..|+. ..|+++|+++ .|++.|+++ ++ ...+...+...+|++ .||+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~-----~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP-----AMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH-----HHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCE
Confidence 346899999999998876654 2589999876 466666554 33 234455566677776 4999
Q ss_pred EEeccccccccc--cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCSITWHA--HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+|..++ ++.. +...+|.++.|+|||||.|++++.
T Consensus 129 vv~~~~l-~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTL-QFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHH-HhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9987554 3332 346799999999999999999874
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.08 E-value=5.4e-10 Score=111.12 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCC-CCCC--CCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGN-RRLP--FPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt-~~LP--FpD~SFDlV 376 (689)
..+|||+|||+|.++..|+. ..|+++|+++. |++.|.+ .++. ..+...++ ..++ +++++||+|
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~-----~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEP-----GVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechH-----HHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 56899999999998877764 25999999874 4444433 3443 33445565 5666 888999999
Q ss_pred Eeccccccccc--------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 377 HCDGCSITWHA--------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 377 hcs~cli~W~~--------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
++..+ .+|.. ....+|.++.|+|||||+|++........ ..+.+.++..+|...
T Consensus 116 ~~~~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 116 YLNFP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA--EYMLEVLSAEGGFLV 177 (202)
T ss_pred EEECC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH--HHHHHHHHhCccccc
Confidence 98643 24432 13578999999999999999987653221 235555666666443
No 48
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.08 E-value=1.2e-09 Score=110.76 Aligned_cols=126 Identities=13% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCeEEEECCccchhHHHhhc-CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA-KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~ 387 (689)
..+|-|+|||.+.+|..+.. ..|...|+.+.. + .+...|+..+|++|+++|++++...++ ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n--------------~-~Vtacdia~vPL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN--------------P-RVTACDIANVPLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SS--------------T-TEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCC--------------C-CEEEecCccCcCCCCceeEEEEEhhhh--CC
Confidence 46899999999999977653 358888876421 1 234567789999999999998754443 34
Q ss_pred cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 388 HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 388 d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
+...+|.|.+|||||||.|+|.+...-+...+.+...++++||+....+. ....-.+..++|..
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~-~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE-SNKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc-CCCeEEEEEEEEcC
Confidence 66799999999999999999998765555556677889999999987543 33455677888865
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.08 E-value=5.6e-11 Score=103.54 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=49.6
Q ss_pred EEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC--CCCCCCcceEEeccccccc
Q 044932 313 LEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL--PFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 313 LDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L--PFpD~SFDlVhcs~cli~W 385 (689)
||+|||+|.++..++.. .++++|+++.+...+. +...+.+.. .....+....+ ..+.++||+|+++.++ +|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl-~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERAR-ERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL-HH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTC-CCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT-S-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH-hh
Confidence 89999999988777654 4899999986431111 111222211 11122222121 1222699999988654 55
Q ss_pred cccHHHHHHHHHhccCCCcEE
Q 044932 386 HAHGGKLLLEMNRILRPSGYF 406 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~f 406 (689)
.++...+|..+.++|||||+|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 688999999999999999986
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.06 E-value=1.3e-09 Score=114.16 Aligned_cols=122 Identities=22% Similarity=0.269 Sum_probs=75.9
Q ss_pred ecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHH---
Q 044932 277 TFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVAL--- 350 (689)
Q Consensus 277 ~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~--- 350 (689)
.|+.+..........-++.+.+.+. ++ ++.+|||||||.|+++.+++.+ .|+|+.+|+ .|.+.|.
T Consensus 35 ~~~~~~~~Le~AQ~~k~~~~~~~~~-l~---~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~-----~Q~~~a~~~~ 105 (273)
T PF02353_consen 35 YFDEGDDTLEEAQERKLDLLCEKLG-LK---PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE-----EQAEYARERI 105 (273)
T ss_dssp --SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H-----HHHHHHHHHH
T ss_pred ecCCchhhHHHHHHHHHHHHHHHhC-CC---CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH-----HHHHHHHHHH
Confidence 4566555555555554555555543 33 4579999999999999998865 577787765 4555554
Q ss_pred -HcCCCc--EEecCCCCCCCCCCCCcceEEeccccccc-cccHHHHHHHHHhccCCCcEEEEEc
Q 044932 351 -ERGFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSITW-HAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 351 -eRGL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~W-~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++|+.. .+...|...++ .+||.|++..++-|. ..+...+|..+.|+|+|||.+++..
T Consensus 106 ~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 106 REAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp HCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred HhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 457653 33344444443 399999987655443 2466799999999999999999864
No 51
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.02 E-value=4.2e-09 Score=105.90 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=83.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc--CCCcE-EecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER--GFPAV-VSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR--GL~~i-~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
.++++||+|||.|.|+..|+.+ .++++|+++ .+++.|++| +.+.+ +...+... .+|.+.||+|+++..+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~-----~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISP-----RALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVL 116 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H-----HHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-G
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCH-----HHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHh
Confidence 6789999999999999999986 589999875 578888887 33332 33333222 3688999999999776
Q ss_pred ccccc--cHHHHHHHHHhccCCCcEEEEEcCCCch-------hHHHHHHHHHHhcceeEEEe--eccccC-ceeEEEEEe
Q 044932 383 ITWHA--HGGKLLLEMNRILRPSGYFILSTKHDSI-------EEEEALTTLTASICWNILAH--KTDEIS-EMGVKIYQK 450 (689)
Q Consensus 383 i~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~~~l-------e~~~~ie~La~~l~W~~v~~--~~~~~g-~~~i~IwqK 450 (689)
+.+.+ +...++..+...|+|||.|++....+.. .--+.|.++++..-=++-.. .+...+ ..-++-++|
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRN 196 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE-
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecC
Confidence 65543 4567899999999999999998754211 11234556655543322111 111112 234666777
Q ss_pred CCC
Q 044932 451 PES 453 (689)
Q Consensus 451 p~~ 453 (689)
|.+
T Consensus 197 ~~~ 199 (201)
T PF05401_consen 197 PVS 199 (201)
T ss_dssp -SS
T ss_pred CcC
Confidence 654
No 52
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=9.1e-09 Score=105.45 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=80.9
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+|||+|.++.+++.. .|+++|+++. +++.|.++ ++...+ .++..+.+||+|+|..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~-----~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani 187 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ-----AVEAARENAELNGVELNV------YLPQGDLKADVIVANI 187 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH-----HHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcC
Confidence 3578999999999887766543 3899999874 45554443 432111 1223334899999853
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
.. .....++.++.|+|||||+|++++... .....+...+...+|..+..... ++-..++++|
T Consensus 188 ~~----~~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~~--~~W~~~~~~~ 249 (250)
T PRK00517 188 LA----NPLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVLER--GEWVALVGKK 249 (250)
T ss_pred cH----HHHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEEEe--CCEEEEEEEe
Confidence 21 123468899999999999999997542 22345777888889988754432 3333445554
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.02 E-value=6.5e-09 Score=100.64 Aligned_cols=120 Identities=18% Similarity=0.060 Sum_probs=78.6
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++...+...+.... ..++||+|++....
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPF-----AVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDVILFNPPY 92 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHH-----HHHHHHHHHHHcCCceEEEEcccccc--cCCcccEEEECCCC
Confidence 357999999999998888765 4899998874 4444433 344333344443333 24699999986433
Q ss_pred cccccc--------------------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeec
Q 044932 383 ITWHAH--------------------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 383 i~W~~d--------------------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
++.... ...+|.++.|+|+|||.+++..+...- ...+..+++..+|.......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--EPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--hHHHHHHHHhCCCeEEEEEE
Confidence 221110 246799999999999999998754321 12366778888888765443
No 54
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.01 E-value=4.8e-09 Score=104.49 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=82.9
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++.+|+.. .|+|+|+++ .|+..|+++ +. ...+...+...++ ++||+|++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~-----~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISE-----QMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEh
Confidence 3578999999999999888764 588999876 456666554 22 2334445555544 799999987
Q ss_pred ccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCCch---------------------hHHHHHHHHHHhcceeEEEee
Q 044932 380 GCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHDSI---------------------EEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 380 ~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~l---------------------e~~~~ie~La~~l~W~~v~~~ 436 (689)
..++++. .+...++.++.|++++++++.+....... ...+.+..+++..+|+++...
T Consensus 127 ~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 127 DVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred hHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 6655543 34578899999999988777765322100 122457788888888877553
No 55
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.00 E-value=3.4e-09 Score=103.99 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC-CCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-PFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-PFpD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..|+.. .++++|+++ .++..|..+++......+. ..+ ++++++||+|+|+.+ ++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~-----~~i~~a~~~~~~~~~~d~~-~~l~~~~~~sfD~Vi~~~~-l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ-----DGVLACVARGVNVIQGDLD-EGLEAFPDKSFDYVILSQT-LQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH-----HHHHHHHHcCCeEEEEEhh-hcccccCCCCcCEEEEhhH-hH
Confidence 358999999999998888643 467888764 5777777777655444332 224 488899999999764 45
Q ss_pred ccccHHHHHHHHHhccCCC
Q 044932 385 WHAHGGKLLLEMNRILRPS 403 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPG 403 (689)
|..++..+|.|+.|+++++
T Consensus 87 ~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred cCcCHHHHHHHHHHhCCeE
Confidence 6778999999999987753
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.00 E-value=7.6e-09 Score=100.84 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=75.5
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++.. .+...+. ..+++ .+||+|++.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~-----~~~~a~~n~~~~~~~~i~~~~~d~-~~~~~-~~~D~v~~~ 104 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPD-----ALRLIKENRQRFGCGNIDIIPGEA-PIELP-GKADAIFIG 104 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHhCCCCeEEEecCc-hhhcC-cCCCEEEEC
Confidence 46899999999999877764 25899999874 4444432 34432 2333332 23454 689999986
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
... . ....++.++.++|+|||+|++.... ......+..+++..+|..+.
T Consensus 105 ~~~-~---~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 105 GSG-G---NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCc-c---CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 432 1 3457899999999999999987532 12234466788888886543
No 57
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.99 E-value=4.7e-10 Score=114.86 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=98.8
Q ss_pred HHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC-CC-CCCC
Q 044932 296 IEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR-LP-FPSG 371 (689)
Q Consensus 296 L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~-LP-FpD~ 371 (689)
|.+||.....| ..+++||+|||||.++..|... .++|+||| ++|+..|.++|+--.+.+.+... ++ ..+.
T Consensus 114 l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS-----~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 114 LAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDMADRLTGVDIS-----ENMLAKAHEKGLYDTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred HHHHHHhccCC-ccceeeecccCcCcccHhHHHHHhhccCCchh-----HHHHHHHHhccchHHHHHHHHHHHhhhccCC
Confidence 34444433434 5899999999999999888764 57888875 68999999998754444333221 22 4468
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC-------------CchhHHHHHHHHHHhcceeEEEeec
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH-------------DSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-------------~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
.||+|.+..++ ++..+.+.++.-+.+.|.|||.|++|... .+-..+..+..++..-+++++....
T Consensus 188 r~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 188 RFDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred cccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 99999987554 45778889999999999999999999532 1112346788999999999987644
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.99 E-value=2.1e-09 Score=117.27 Aligned_cols=109 Identities=25% Similarity=0.305 Sum_probs=74.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc--CCCcEEecCCCCC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER--GFPAVVSPLGNRR 365 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR--GL~~i~~~~dt~~ 365 (689)
..++.|.+.+. +. +..+|||||||+|.++.+++.. .|+++|+++ .|++.|.++ ++...+...+...
T Consensus 154 ~k~~~l~~~l~-l~---~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~ 224 (383)
T PRK11705 154 AKLDLICRKLQ-LK---PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRD 224 (383)
T ss_pred HHHHHHHHHhC-CC---CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhh
Confidence 34455544443 22 3578999999999999888753 588888875 577777765 3333333344433
Q ss_pred CCCCCCCcceEEeccccccc-cccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 366 LPFPSGVFDAIHCDGCSITW-HAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 366 LPFpD~SFDlVhcs~cli~W-~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ +++||+|++...+.|. ..+...+|.++.|+|||||++++...
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 4799999986544332 13457899999999999999999764
No 59
>PRK06202 hypothetical protein; Provisional
Probab=98.99 E-value=1.2e-09 Score=109.77 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=68.5
Q ss_pred CCCeEEEECCccchhHHHhhc--------CCeEEEEcCCcccHHHHHHHHHHcCC--CcEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA--------KEVLTLTVGLKDDLVDLAQVALERGF--PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--------~~V~gmDIsp~D~seamlq~A~eRGL--~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
+..+|||+|||+|.++..|+. ..|+|+|+++ .|++.|.++.. ...+...+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP-----RAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH-----HHHHHHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 456899999999998777653 2588898876 57777776521 12233344556778889999999
Q ss_pred eccccccccccH--HHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAHG--GKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+.++ ||..++ ..+|.|+.|+|| |.+++.+.
T Consensus 135 ~~~~l-hh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 135 SNHFL-HHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ECCee-ecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 98765 445443 479999999999 56666654
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.99 E-value=5.3e-09 Score=109.58 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=75.0
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++.+++.. .|+++|+++. +++.|++ .++...+.......+++.+++||+|+|...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~-----al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL-----AVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL 234 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH-----HHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC
Confidence 478999999999987666543 5899999874 4444443 344332222111133455789999998532
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.+ ....++.++.|+|||||+|+++.... .....+.+.+++. |..+.
T Consensus 235 -~~---~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 235 -AE---VIKELYPQFSRLVKPGGWLILSGILE--TQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred -HH---HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHHHHHHHHcc-Cceee
Confidence 11 23478999999999999999998642 2234466666665 76654
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.99 E-value=2.4e-09 Score=107.51 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=63.9
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC--------CCCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL--------PFPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L--------PFpD~SFDl 375 (689)
..+|||+|||+|.++..++.. .|+++|+++. ... .++ .+...|...+ ++++.+||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~---~~v--~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPI---VGV--DFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCC---CCc--EEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 468999999999998777643 4999999861 111 122 2334444443 367889999
Q ss_pred EEeccccccccccH-----------HHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHAHG-----------GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~d~-----------~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|..+ .+|..++ ..+|.++.|+|||||.|++....
T Consensus 121 V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 121 VMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred EecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 998643 2333221 46899999999999999997644
No 62
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.97 E-value=3.5e-09 Score=109.97 Aligned_cols=125 Identities=12% Similarity=0.175 Sum_probs=93.5
Q ss_pred CCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAH 388 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d 388 (689)
...|-|+|||.|.+|. -....|+.+|+.+.. ..+...|+.++|++|+|.|++++...+ ...+
T Consensus 181 ~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~---------------~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS-SERHKVHSFDLVAVN---------------ERVIACDMRNVPLEDESVDVAVFCLSL--MGTN 242 (325)
T ss_pred ceEEEecccchhhhhh-ccccceeeeeeecCC---------------CceeeccccCCcCccCcccEEEeeHhh--hccc
Confidence 4689999999998765 223468999986531 123456778899999999999863322 3457
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 389 GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 389 ~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
...++.|++|||+|||.++|..-..-+.+...+.+.+..|||..... .......++..++|+.
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~-d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK-DVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh-hhhcceEEEEEEecCC
Confidence 78999999999999999999987665555556888899999988654 3334556678888865
No 63
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.97 E-value=2.5e-09 Score=105.49 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=77.2
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC---CCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP---FPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP---FpD~SFDlVhcs~ 380 (689)
..+|||||||+|.++..|+.. .|+++|+++... ..+...+...++.. .+...++..++ +++++||.|++..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 468999999999998877753 589999876422 11222233345543 34445554443 6678999998753
Q ss_pred ccccccccH--------HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 381 CSITWHAHG--------GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 381 cli~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
-.+|.... ..+|.++.|+|||||.|++.+....... ..++.+...-+|+.+
T Consensus 96 -pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~-~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 96 -PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFE-DMLKVLSENDLFENT 154 (194)
T ss_pred -CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHhCCCeEec
Confidence 23554321 4689999999999999999876643222 113334444446654
No 64
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.97 E-value=2.6e-09 Score=106.99 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=83.8
Q ss_pred CCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..++||+|||.|..+.+|+.++ |+++|+++.-. +...+.|.+++++......|.....++ +.||+|+++.++.+..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al-~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVAL-EKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHH-HHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHH-HHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 3589999999999999999775 99999998533 345667777888876666665555665 7899998764443322
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEcC-----------CCchhHHHHHHHHHHhcceeEEEeec
Q 044932 387 -AHGGKLLLEMNRILRPSGYFILSTK-----------HDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 387 -~d~~~aL~EI~RVLRPGG~fVIsdp-----------~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
+....++..|...|+|||++++... ..++....++..... +|+++....
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 3346789999999999999988431 122223234555555 698876533
No 65
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.93 E-value=2.4e-09 Score=110.23 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred CCeEEEECCccchhHHH-hhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcEEec-----CCCCCCCCC--CCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVAS-LLA--KEVLTLTVGLKDDLVDLAQVALERGFPAVVSP-----LGNRRLPFP--SGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~-La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~-----~dt~~LPFp--D~SFDlVhc 378 (689)
-+.++|+|||+| .++. +++ ..|+|+|++ ++|+++|.+. .+..+.. .+..-.++- ++|.|||+|
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~~k~VIatD~s-----~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEHYKEVIATDVS-----EAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred cceEEEeccCCC-cchHHHHHhhhhheeecCC-----HHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehh
Confidence 458999999999 5544 444 369999986 4799988764 2333321 112223443 899999999
Q ss_pred ccccccccccHHHHHHHHHhccCCCc-EEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSG-YFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG-~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
+.|+ ||. |...+++++.||||+.| .+++-...+..-.+.+...+..+++|+
T Consensus 107 Aqa~-HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 107 AQAV-HWF-DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhH-Hhh-chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 9885 777 67789999999999877 666665443333344566777777776
No 66
>PRK04266 fibrillarin; Provisional
Probab=98.92 E-value=2.1e-08 Score=102.32 Aligned_cols=122 Identities=19% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCC----CCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRR----LPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~----LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..|+.. .|+++|+++.+.. .+.+.|.++ ++..+ ..+... .+++ .+||+|++.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~-~l~~~a~~~~nv~~i--~~D~~~~~~~~~l~-~~~D~i~~d 148 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR-ELLEVAEERKNIIPI--LADARKPERYAHVV-EKVDVIYQD 148 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH-HHHHHhhhcCCcEEE--ECCCCCcchhhhcc-ccCCEEEEC
Confidence 468999999999998888764 4999999874331 233344443 22222 223322 2334 569999864
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC------CCc-hhHHHHHHHHHHhcceeEEEeec
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK------HDS-IEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp------~~~-le~~~~ie~La~~l~W~~v~~~~ 437 (689)
.. .+| ....+|.++.|+|||||+|+|..+ ... ..........++..+++.+...+
T Consensus 149 ~~-~p~--~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 149 VA-QPN--QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CC-Chh--HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 22 121 223568999999999999999522 100 11112344777888998876544
No 67
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.91 E-value=2.5e-08 Score=100.02 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=77.5
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .++++|+++. +++.|. ..++. ..+...+... ++++++||+|+|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPE-----ALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEEC
Confidence 458999999999998888753 5889998864 344333 34554 2333444433 5677899999984
Q ss_pred ccccc------ccc-------------------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 380 GCSIT------WHA-------------------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 380 ~cli~------W~~-------------------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.-.+. +.. ....++.++.++|+|||.+++...... ...+.+++...+|..+.
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~---~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQ---GEAVRALFEAAGFADVE 238 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccH---HHHHHHHHHhCCCCceE
Confidence 21110 000 013568899999999999999765422 23477788888886654
Q ss_pred e
Q 044932 435 H 435 (689)
Q Consensus 435 ~ 435 (689)
.
T Consensus 239 ~ 239 (251)
T TIGR03534 239 T 239 (251)
T ss_pred E
Confidence 3
No 68
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.1e-08 Score=106.53 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=78.2
Q ss_pred CCCeEEEECCccchhHHHhh--cC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCC-CCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLL--AK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPS-GVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD-~SFDlVhcs~cli 383 (689)
++++|||+|||+|-++.+.+ +. .|+|+|++|.-+ .+...-|...++...........+.++. +.||+|+|.- +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI--L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI--L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh--h
Confidence 46899999999998765544 44 499999998422 2333444445666322111112233444 5999999852 1
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeec
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
- .-...+..++.+.|||||++++|+--.. ..+.+.+.+.+-+|.+.....
T Consensus 239 A--~vl~~La~~~~~~lkpgg~lIlSGIl~~--q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 239 A--EVLVELAPDIKRLLKPGGRLILSGILED--QAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred H--HHHHHHHHHHHHHcCCCceEEEEeehHh--HHHHHHHHHHhCCCeEeEEEe
Confidence 1 1123677899999999999999984321 223466666677898876543
No 69
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.90 E-value=1.9e-08 Score=106.77 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=82.6
Q ss_pred CCeEEEECCccchhH--HHhhcC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFV--ASLLAK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfa--a~La~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||+|-++ +++++. .|+++|++|.- -..+.+-+...|+...+.+.. ...++...||+|++.-. .
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~A-v~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~--~- 235 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLA-VEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL--A- 235 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHH-HHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES---H-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHH-HHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC--H-
Confidence 579999999999765 444444 59999999952 234445555567766554332 22344689999997521 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
.-...++..+.++|+|||+|++|+-... ..+.+.+.++. +|.......+ ++-..+++||
T Consensus 236 -~vL~~l~~~~~~~l~~~G~lIlSGIl~~--~~~~v~~a~~~-g~~~~~~~~~--~~W~~l~~~K 294 (295)
T PF06325_consen 236 -DVLLELAPDIASLLKPGGYLILSGILEE--QEDEVIEAYKQ-GFELVEEREE--GEWVALVFKK 294 (295)
T ss_dssp -HHHHHHHHHCHHHEEEEEEEEEEEEEGG--GHHHHHHHHHT-TEEEEEEEEE--TTEEEEEEEE
T ss_pred -HHHHHHHHHHHHhhCCCCEEEEccccHH--HHHHHHHHHHC-CCEEEEEEEE--CCEEEEEEEe
Confidence 1123567788999999999999986432 23346666676 9988765443 4445566666
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.89 E-value=1e-08 Score=91.11 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCC-cEEecCCCCC-CCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFP-AVVSPLGNRR-LPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~-~i~~~~dt~~-LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|. ..++. ..+...+... +++...+||+|++
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE-----ALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFI 94 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH-----HHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEE
Confidence 468999999999998887753 4889998764 444433 23443 2233333322 4444469999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..+.. ....++.++.|+|+|||+|++..
T Consensus 95 ~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 65322 23489999999999999999864
No 71
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.89 E-value=1e-08 Score=103.69 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=65.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHH-HHHcCCC----------------cEEecCCCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQV-ALERGFP----------------AVVSPLGNRRLPFP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~-A~eRGL~----------------~i~~~~dt~~LPFp 369 (689)
..+|||+|||.|..+.+|+++ .|+|+|+|+. +++. +.+.++. ..+.+.|...++..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~-----Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI-----AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH-----HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 468999999999999999976 5999999874 3333 3333432 23344555444432
Q ss_pred -CCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEE
Q 044932 370 -SGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 370 -D~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIs 409 (689)
...||+|+...++++... ....++..|.++|||||++++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 357999987655554332 3467899999999999975554
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.88 E-value=2.7e-08 Score=99.56 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCC-CCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LP-FpD~SFDlVhcs~c 381 (689)
..+|||||||+|.++..+... .|+++|+++. ++..|.++ ++...+...+...++ ..++.||+|+|+..
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEE-----NIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 568999999999998877754 4888888763 44444432 443344444444443 45689999998754
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ ++..++..+|..+.++|+|||++++..+
T Consensus 124 l-~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 L-EHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred h-hccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4 3456788999999999999999999864
No 73
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.87 E-value=2.9e-08 Score=98.41 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=64.1
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
+..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++ ++ ...+...+ +++.+++||+|+|.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~-----~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~ 134 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISP-----QMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCL 134 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCH-----HHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEc
Confidence 3568999999999999888754 488999876 456666553 33 12233333 56667899999998
Q ss_pred ccccccc-ccHHHHHHHHHhccCCCcEEEE
Q 044932 380 GCSITWH-AHGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 380 ~cli~W~-~d~~~aL~EI~RVLRPGG~fVI 408 (689)
.+++||. .+...++.++.+++++++.+.+
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 7665544 2446788999998865555443
No 74
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.86 E-value=8.4e-09 Score=112.99 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCC--CCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRL--PFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~L--PFpD~SFDlVhcs~c 381 (689)
...+||||||+|.++..++.. .++|+|+++..+ ..+.+.+..+|+..+ +...|+..+ ++++++||.|++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF- 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF- 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-
Confidence 458999999999999888853 699999987533 233444555676554 334455433 58899999999764
Q ss_pred cccccccH------HHHHHHHHhccCCCcEEEEEcCCC
Q 044932 382 SITWHAHG------GKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 382 li~W~~d~------~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
-.+|.... ..+|.++.|+|+|||.+.+.+-..
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 35675432 478999999999999999987553
No 75
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.85 E-value=2.9e-08 Score=106.08 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC----------CCcEEecCCCCCCCCCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG----------FPAVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG----------L~~i~~~~dt~~LPFpD~SFDlV 376 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++. ....+...+. +..+++||+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~-----~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l~~~fD~V 216 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISA-----AMVAEAERRAKEALAALPPEVLPKFEANDL---ESLSGKYDTV 216 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcccccccccceEEEEcch---hhcCCCcCEE
Confidence 468999999999999888865 489999876 4666666542 1122333333 2236899999
Q ss_pred EeccccccccccH-HHHHHHHHhccCCCcEEEE
Q 044932 377 HCDGCSITWHAHG-GKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 377 hcs~cli~W~~d~-~~aL~EI~RVLRPGG~fVI 408 (689)
+|..+++|+..+. ..++..+.+ |.+||.++.
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 9987776654332 335555655 456665443
No 76
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.85 E-value=8.5e-09 Score=105.23 Aligned_cols=116 Identities=15% Similarity=0.256 Sum_probs=85.1
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+-|||||||+|.-+..|.+.+ .+|+|||| .|+..|.++-+.+. ...++ +-|||+.++||.|++.. .+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSp-----sML~~a~~~e~egdlil~DMG-~GlpfrpGtFDg~ISIS-Av 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISP-----SMLEQAVERELEGDLILCDMG-EGLPFRPGTFDGVISIS-AV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCH-----HHHHHHHHhhhhcCeeeeecC-CCCCCCCCccceEEEee-ee
Confidence 46789999999998888887653 78999987 58888887755543 33444 78999999999998642 23
Q ss_pred cccc-------cH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcce
Q 044932 384 TWHA-------HG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICW 430 (689)
Q Consensus 384 ~W~~-------d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W 430 (689)
.|.- +| ..++.-++.+|++|+..++.-.+..-...+.|...+...+|
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 4431 22 34677799999999999999888765554556656666555
No 77
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.85 E-value=2.7e-08 Score=98.47 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCC-CcEEecCCCCCCCCC-CCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGF-PAVVSPLGNRRLPFP-SGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL-~~i~~~~dt~~LPFp-D~SFDlVhcs~ 380 (689)
..+|||+|||+|.++..++.. .++++|+++. ++..+.+ .++ ...+...+...++.. .++||+|++..
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEE-----NIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 568999999999988777643 4888888763 4444443 233 233444454455543 37999999875
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. +++..++..+|.++.++|+|||+++++..
T Consensus 121 ~-l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 121 V-LEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred H-HHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 4 45567888999999999999999998764
No 78
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.85 E-value=3.7e-09 Score=109.98 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CCc-------E--EecCCCCCCCCCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FPA-------V--VSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~~-------i--~~~~dt~~LPFpD~SFDl 375 (689)
+++|||+|||+|.++..|+.. .|+|+|++. .|+..|.+.. .|. . +.+.+.+. +. +.||+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~-----~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--~~-~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASD-----DMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--LT-GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccH-----HHHHHHHHhhhcCchhccccceeeehhhcchhh--cc-cccce
Confidence 478999999999999888864 588888764 5777776641 111 1 11112222 22 45999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|+.++.| ..++..++.-+.+.|||||.++|++-.
T Consensus 162 VvcsevleH-V~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 162 VVCSEVLEH-VKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeHHHHHH-HhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999987765 789999999999999999999999754
No 79
>PRK14968 putative methyltransferase; Provisional
Probab=98.84 E-value=7e-08 Score=92.32 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=76.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHH----HcCCC---cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVAL----ERGFP---AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~----eRGL~---~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .|+++|+++. ++..++ ..++. ..+...+... ++++.+||+|++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPY-----AVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHH-----HHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEEC
Confidence 468999999999998877754 6889998864 344432 22333 2233333322 4566799999875
Q ss_pred ccccccc--------------------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 380 GCSITWH--------------------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~cli~W~--------------------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
.-..+.. .....++.++.++|+|||.+++..+... ....+..++...+|+....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--GEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--CHHHHHHHHHHCCCeeeee
Confidence 3221100 0124578999999999999988765321 1234777888889977554
No 80
>PLN03075 nicotianamine synthase; Provisional
Probab=98.84 E-value=1.8e-08 Score=106.95 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=88.5
Q ss_pred CCCeEEEECCccchhHHHhh-----c-CCeEEEEcCCcccHHHHHHHHHH-cCCC--cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLL-----A-KEVLTLTVGLKDDLVDLAQVALE-RGFP--AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La-----~-~~V~gmDIsp~D~seamlq~A~e-RGL~--~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..++|||||||.|.+++.++ . ..++++|+++.... .+.+.+.. .++. ..+...+...++-..+.||+|+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~-~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAND-VARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHH-HHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 46899999999886543322 1 24889999874222 11222211 3443 33455555444323478999999
Q ss_pred cccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHH-HHHHhcceeEEEeeccccC-ceeEEEEEeCCC
Q 044932 379 DGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHDSIEE-EEALT-TLTASICWNILAHKTDEIS-EMGVKIYQKPES 453 (689)
Q Consensus 379 s~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie-~La~~l~W~~v~~~~~~~g-~~~i~IwqKp~~ 453 (689)
. +++.|. .++..+|..+.|+|+|||+|++...+..+.- +..+. ...+ +|+....-.-+.. .+.+.+.||+..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEEEEeecC
Confidence 8 788875 6889999999999999999999986543320 00010 1122 8988765332222 245888998753
No 81
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=1.4e-08 Score=106.99 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=85.1
Q ss_pred eeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHH---
Q 044932 275 YLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQV--- 348 (689)
Q Consensus 275 ~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~--- 348 (689)
.-.|+............-++.+.+.+. ++ ++.+|||||||.|+++.+++.. .|+|+++|+ +|...
T Consensus 43 cayf~~~~~tL~eAQ~~k~~~~~~kl~-L~---~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~-----~Q~~~~~~ 113 (283)
T COG2230 43 CAYFEDPDMTLEEAQRAKLDLILEKLG-LK---PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE-----EQLAYAEK 113 (283)
T ss_pred eEEeCCCCCChHHHHHHHHHHHHHhcC-CC---CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH-----HHHHHHHH
Confidence 346777765445554455666666554 44 4689999999999999888854 578888876 34444
Q ss_pred -HHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 349 -ALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 349 -A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.++|+...+.+. .+..+.....||-|++....-|.. .+...+|.-++++|+|||.+++-+-
T Consensus 114 r~~~~gl~~~v~v~-l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 114 RIAARGLEDNVEVR-LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred HHHHcCCCcccEEE-eccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 4455776222111 123333345699999876554432 3567899999999999999998764
No 82
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=104.25 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=94.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..++|.|+|||+|..+..|+.+ .|+|+|-| .+|+..|++|.....+...|.... -|...+|+++++ ..+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS-----~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaN-Avl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSS-----PAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFAN-AVL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCC-----HHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhh-hhh
Confidence 5789999999999988888764 57888765 479999999988777765555443 356899999875 567
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHhcceeE
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTASICWNI 432 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~l~W~~ 432 (689)
+|.++...+|.-+.-.|.|||.+.+..|....+ ....|.+.++..-|..
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~ 152 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQ 152 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhh
Confidence 899999999999999999999999999865433 2356888888887754
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.82 E-value=1.2e-08 Score=98.09 Aligned_cols=110 Identities=20% Similarity=0.142 Sum_probs=78.4
Q ss_pred EEEcCCcccHHHHHHHHHHcC-------C-CcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCc
Q 044932 333 TLTVGLKDDLVDLAQVALERG-------F-PAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSG 404 (689)
Q Consensus 333 gmDIsp~D~seamlq~A~eRG-------L-~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG 404 (689)
|+|+| +.|++.|.+|. . ...+...+...|||++++||+|++..++ +|..++..+|.|++|+|||||
T Consensus 2 GvD~S-----~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 2 GLDFS-----SEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred eEcCC-----HHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCe
Confidence 56765 46888886541 1 2345566788999999999999987654 556789999999999999999
Q ss_pred EEEEEcCCC--------------------------------ch-------hHHHHHHHHHHhcceeEEEeeccccCceeE
Q 044932 405 YFILSTKHD--------------------------------SI-------EEEEALTTLTASICWNILAHKTDEISEMGV 445 (689)
Q Consensus 405 ~fVIsdp~~--------------------------------~l-------e~~~~ie~La~~l~W~~v~~~~~~~g~~~i 445 (689)
+|++.+... ++ ...+++..+++..+|+.+......++.+++
T Consensus 76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~ 155 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGN 155 (160)
T ss_pred EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHe
Confidence 999875210 00 012467778888889877766666666555
Q ss_pred EEE
Q 044932 446 KIY 448 (689)
Q Consensus 446 ~Iw 448 (689)
.+.
T Consensus 156 ~~~ 158 (160)
T PLN02232 156 LVA 158 (160)
T ss_pred eEe
Confidence 543
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.82 E-value=2.6e-08 Score=99.22 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.+++.|+. ..|+++|+++. +++.|. ..++. ..+...+....+...++||+|+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~-----~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKE-----LAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 46899999999998876653 25899998864 444443 33543 2344445544434557999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.... + .+..++.|+|+|||+|++...
T Consensus 148 ~~~~~-~------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 148 VTAAA-S------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EccCc-c------hhhHHHHHhcCcCcEEEEEEc
Confidence 87543 2 344689999999999988654
No 85
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.80 E-value=1.6e-08 Score=107.64 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCCeEEEECCccchhHHHh--hcCCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEecc----
Q 044932 308 NIRVVLEIGSADLSFVASL--LAKEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHCDG---- 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~L--a~~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhcs~---- 380 (689)
+..+|||.|||+|.++..+ ....|+|+|+++.+... +...+...|+.. .+...|...+|+++++||+|++..
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~-a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAG-ARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHH-HHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 3568999999999986543 34569999998753321 111222335543 345667788999889999999841
Q ss_pred -cccccc---ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 381 -CSITWH---AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 381 -cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
....-+ .....+|.++.|+|+|||++++..+... .+..+++..+| ++..
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VVKR 313 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-chhe
Confidence 111100 1135799999999999999999887642 25567888899 6543
No 86
>PTZ00146 fibrillarin; Provisional
Probab=98.76 E-value=3.1e-08 Score=104.94 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=78.6
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCC---CCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRR---LPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~---LPFpD~SFDlVhc 378 (689)
...+|||+|||+|.++..+++. .|+++|+++.. ...++..|..+ ++..++. |+.. ++++..+||+|++
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r~NI~~I~~--Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKRPNIVPIIE--DARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhcCCCEEEEC--CccChhhhhcccCCCCEEEE
Confidence 3468999999999998888753 39999998742 23577777665 4433333 3321 2223468999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch------hH--HHHHHHHHHhcceeEEEee
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI------EE--EEALTTLTASICWNILAHK 436 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l------e~--~~~ie~La~~l~W~~v~~~ 436 (689)
... .+ .+...++.++.|+|||||+|+|....... +. .+++ +.++..+|+.+.+.
T Consensus 209 Dva-~p--dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~e~v 270 (293)
T PTZ00146 209 DVA-QP--DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPKEQL 270 (293)
T ss_pred eCC-Cc--chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceEEEE
Confidence 643 22 23446677999999999999996432111 00 0234 55677788876543
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=98.76 E-value=9e-08 Score=96.23 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++...+...+... .+++++||+|+|..-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~-----~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npP 110 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR-----AVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPP 110 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH-----HHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCC
Confidence 468999999999988777653 5899999874 4443333 35544444444322 356789999998531
Q ss_pred ccc--------------ccc------cHHHHHHHHHhccCCCcEEEEEcCCC-chhHHHHHHHHHHhcceeE
Q 044932 382 SIT--------------WHA------HGGKLLLEMNRILRPSGYFILSTKHD-SIEEEEALTTLTASICWNI 432 (689)
Q Consensus 382 li~--------------W~~------d~~~aL~EI~RVLRPGG~fVIsdp~~-~le~~~~ie~La~~l~W~~ 432 (689)
.++ |.. ....++.++.++|||||+|++..... ... .+..+++..+|..
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~---~~~~~l~~~g~~~ 179 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE---RTLTRLSEAGLDA 179 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH---HHHHHHHHCCCCe
Confidence 111 100 02357788999999999999865432 221 2344455556643
No 88
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=4.4e-08 Score=99.38 Aligned_cols=95 Identities=15% Similarity=0.008 Sum_probs=65.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHH-HHHcCCCc----------------EEecCCCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQV-ALERGFPA----------------VVSPLGNRRLPFP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~-A~eRGL~~----------------i~~~~dt~~LPFp 369 (689)
..+|||+|||.|..+.+|+++ .|+|+|+++. +++. +.++++.. .+...|...++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~-----Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL-----AVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHH-----HHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 358999999999999999976 5999999874 3333 34555532 2234454444322
Q ss_pred -CCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEE
Q 044932 370 -SGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 370 -D~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVI 408 (689)
...||+|+...++++.. .....++..|.++|+|||++++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 25899999655444432 2346899999999999996444
No 89
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.74 E-value=4e-08 Score=103.02 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHH----HHcCCCcE--EecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVA----LERGFPAV--VSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A----~eRGL~~i--~~~~dt~~LPFpD~SFDlVh 377 (689)
+.++|||||||+|.++..++.+ .++++|+ | .+++.| .+.|+... +...|....+++ .+|+|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~-----~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~ 220 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-P-----GAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVL 220 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-H-----HHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEE
Confidence 4579999999999998887754 3778886 3 234443 34455432 334455455676 379998
Q ss_pred ecccccccccc-HHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAH-GGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d-~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+++++++|..+ ...+|.+++|+|+|||+|+|.+.
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 87766666543 35799999999999999999864
No 90
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.73 E-value=4.8e-08 Score=98.09 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||||||+|.+++.|+. ..|+++|+++. +++.|.++ |+. ..+...+....+++++.||+|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~-----~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE-----LAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEE
Confidence 357899999999998876653 25899998763 44444432 443 3344455555555678999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+... .+ .+...+.+.|||||.|++-.
T Consensus 151 ~~~~-~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAA-GP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCC-cc------cchHHHHHhhCCCcEEEEEE
Confidence 8643 23 34457788999999998854
No 91
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.70 E-value=6.8e-08 Score=101.90 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc------CCCcEEecCCCCC-CCCCCCC---c
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER------GFPAVVSPLGNRR-LPFPSGV---F 373 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR------GL~~i~~~~dt~~-LPFpD~S---F 373 (689)
..+|||+|||+|.++..|+. ..|+++|+|+ .|++.|.++ ++.......|... ++++... .
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~-----~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISA-----DALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH-----HHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCC
Confidence 46899999999998877764 3588999876 466655543 2322223344433 4454332 2
Q ss_pred ceEEecccccccc--ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 374 DAIHCDGCSITWH--AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 374 DlVhcs~cli~W~--~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+++++....+.+. .+...+|.+++++|+|||+|+|..
T Consensus 139 ~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3333332233322 234578999999999999999875
No 92
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.70 E-value=2.2e-07 Score=91.77 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecCCCCC-CCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPLGNRR-LPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~dt~~-LPFpD~SFDl 375 (689)
...+|||+|||+|.++..++. ..|+++|+++. +++.|. ..++. ..+...+... ++..+..||+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~-----~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEK-----AINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 346899999999998876532 35899999874 444433 33432 2232334333 3333468999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
|++... ..+...+|.++.|+|+|||++++.... .+....+..+++.++|.
T Consensus 115 V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 115 IFIGGG----SEKLKEIISASWEIIKKGGRIVIDAIL--LETVNNALSALENIGFN 164 (198)
T ss_pred EEECCC----cccHHHHHHHHHHHcCCCcEEEEEeec--HHHHHHHHHHHHHcCCC
Confidence 987431 235568999999999999999985442 22233455666777774
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.68 E-value=1.5e-07 Score=94.08 Aligned_cols=91 Identities=21% Similarity=0.158 Sum_probs=61.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.+++.|+.. .|+++|+++. +++.|++ .|+.. .+...+....+.....||+|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~-----~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPE-----LAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH-----HHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEE
Confidence 3568999999999998877643 2899998864 4444433 35532 233444443333446899999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.... + .+...+.+.|+|||+|++..
T Consensus 152 ~~~~~-~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAG-P------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCc-c------cccHHHHHhcCcCcEEEEEE
Confidence 76432 2 34567889999999999864
No 94
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.66 E-value=1.2e-07 Score=92.82 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=60.8
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC--------CCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP--------FPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP--------FpD~SFDl 375 (689)
..+|||+|||+|.++..++.. .|+++|+++.. ...++. +...+....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~--~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVD--FIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCce--EEEeeCCChhHHHHHHHHhCCCCccE
Confidence 568999999999987766532 38999998731 112332 2223333322 56789999
Q ss_pred EEecccc---cccccc-------HHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCS---ITWHAH-------GGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cl---i~W~~d-------~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+|..+. -.|..+ ...+|.++.++|+|||+|++...
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9985321 112211 25789999999999999999653
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.66 E-value=7.2e-07 Score=98.85 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=83.0
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCC-CCCcceEEecc
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFP-SGVFDAIHCDG 380 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFp-D~SFDlVhcs~ 380 (689)
.+|||+|||+|.++..|+. ..|+++|+++. |++.|++ .++...+...|.....++ .++||+|+|.-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~-----ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPP-----ALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECC
Confidence 5899999999999877763 35899999864 5555543 344444444443222232 46899999853
Q ss_pred cccc------------------cc--ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee
Q 044932 381 CSIT------------------WH--AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 381 cli~------------------W~--~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
-.++ +. .++ ..++.++.+.|+|||++++...... .+.+.+++...+|..+...
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q---~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ---GAAVRGVLAENGFSGVETL 404 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH---HHHHHHHHHHCCCcEEEEE
Confidence 1111 00 011 2456667789999999988665432 2357888888899766554
Q ss_pred ccccCceeEEEEEe
Q 044932 437 TDEISEMGVKIYQK 450 (689)
Q Consensus 437 ~~~~g~~~i~IwqK 450 (689)
.+-.+...+.+.++
T Consensus 405 kDl~G~dR~v~~~~ 418 (423)
T PRK14966 405 PDLAGLDRVTLGKY 418 (423)
T ss_pred EcCCCCcEEEEEEE
Confidence 54445455555554
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.65 E-value=1.1e-07 Score=78.61 Aligned_cols=94 Identities=21% Similarity=0.244 Sum_probs=63.0
Q ss_pred eEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHH---HcC-C-CcEEecCCCCCCC-CCCCCcceEEeccc
Q 044932 311 VVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVAL---ERG-F-PAVVSPLGNRRLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~---eRG-L-~~i~~~~dt~~LP-FpD~SFDlVhcs~c 381 (689)
+|||+|||+|.++..++. ..++++|+++. ++..+. ..+ . ...+...+....+ +....||+|++...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV-----ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999887775 35888988763 333333 111 1 1222233333332 24578999998765
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
..++......++..+.++|+|||++++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4322456678999999999999999986
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.65 E-value=3.9e-07 Score=93.12 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc---CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER---GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR---GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.++ +. ...+...+. ..++++++||+|+|.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~-----~l~~a~~n~~~~~~~~i~~~~~d~-~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE-----ALAVARRNAKHGLGARVEFLQGDW-FEPLPGGRFDLIVSN 182 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHhCCCCcEEEEEccc-cCcCCCCceeEEEEC
Confidence 46899999999998887764 35899998763 45554443 21 222333333 123446899999984
Q ss_pred ccccc-------------cc------------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 380 GCSIT-------------WH------------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 380 ~cli~-------------W~------------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.-.+. +. .....++.++.++|+|||++++...... ...+..++...+|..+.
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~---~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ---GEAVRALLAAAGFADVE 259 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH---HHHHHHHHHhCCCceeE
Confidence 21110 00 0124577888899999999999654322 23477788888886544
Q ss_pred e
Q 044932 435 H 435 (689)
Q Consensus 435 ~ 435 (689)
.
T Consensus 260 ~ 260 (275)
T PRK09328 260 T 260 (275)
T ss_pred E
Confidence 3
No 98
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.63 E-value=1.8e-07 Score=100.94 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=66.1
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
.+|||+|||+|.++..++.. .|+++|+++. ++..|. ..++...+...+. +...++.||+|+|...
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~-----Al~~A~~nl~~n~l~~~~~~~D~--~~~~~~~fDlIvsNPP 270 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAA-----ALESSRATLAANGLEGEVFASNV--FSDIKGRFDMIISNPP 270 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCEEEEccc--ccccCCCccEEEECCC
Confidence 47999999999999887753 5889998764 444443 3455554443333 2233589999998643
Q ss_pred ccccc-----ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SITWH-----AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+ |+. .....++.++.|+|+|||.|+|....
T Consensus 271 F-H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 271 F-HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred c-cCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 2 221 13468899999999999999987653
No 99
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.63 E-value=5.4e-07 Score=87.26 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=63.5
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|. ..++. ..+...|. --++++..||+|+|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~-----a~~~a~~n~~~n~~~~v~~~~~d~-~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPD-----ALELAKRNAERNGLENVEVVQSDL-FEALPDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHH-----HHHHHHHHHHHTTCTTEEEEESST-TTTCCTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHH-----HHHHHHHHHHhcCccccccccccc-cccccccceeEEEEc
Confidence 468999999999988887753 3899998863 444443 34555 33333332 123447999999985
Q ss_pred cccccccc-----cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 380 GCSITWHA-----HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 380 ~cli~W~~-----d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
-=. +... -...++.+..+.|+|||.|++....
T Consensus 106 PP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 106 PPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp --S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cch-hcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 211 1111 1357889999999999999776544
No 100
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.59 E-value=6.4e-08 Score=86.12 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=64.0
Q ss_pred CeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH----cCC--CcEEecCCCCCCC--CCCCCcceEEe
Q 044932 310 RVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE----RGF--PAVVSPLGNRRLP--FPSGVFDAIHC 378 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e----RGL--~~i~~~~dt~~LP--FpD~SFDlVhc 378 (689)
.+|||+|||+|.++.+++. ..++++|++|. .++.|+. .++ ...+...|...++ +++++||+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~-----~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPE-----AVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHH-----HHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHH-----HHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 4799999999998766653 56999999874 3444433 233 2344455544443 78899999998
Q ss_pred cccccccc-------ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWH-------AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~-------~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.--..... .....++.++.|+|||||.+++..+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 63222111 0124779999999999999998754
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.55 E-value=1e-06 Score=92.15 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=80.3
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEec
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++. ..+...+.. -++++..||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~-----al~~a~~n~~~~~~~~~v~~~~~d~~-~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPD-----ALAVAEENAEKNQLEHRVEFIQSNLF-EPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEECchh-ccCcCCCccEEEEC
Confidence 5899999999998887774 35999998863 4444443 3543 233333332 24555689999984
Q ss_pred cc------------cccccc------------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHH-hcceeEEE
Q 044932 380 GC------------SITWHA------------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTA-SICWNILA 434 (689)
Q Consensus 380 ~c------------li~W~~------------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~-~l~W~~v~ 434 (689)
-- ...|.+ ....++.++.++|+|||+|++....... ..+.+++. ..+|..+.
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIKFTWYDVE 266 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhcCCCceeE
Confidence 10 011111 1235788899999999999987765432 23666666 46786554
Q ss_pred eeccccCceeEEEEE
Q 044932 435 HKTDEISEMGVKIYQ 449 (689)
Q Consensus 435 ~~~~~~g~~~i~Iwq 449 (689)
...+-.+...+.+.+
T Consensus 267 ~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 267 NGRDLNGKERVVLGF 281 (284)
T ss_pred EecCCCCCceEEEEE
Confidence 434433434444443
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.53 E-value=2.3e-06 Score=84.31 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=61.4
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHH----HcCCCc-EEecCCCCC-CCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVAL----ERGFPA-VVSPLGNRR-LPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~----eRGL~~-i~~~~dt~~-LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..++. ..|+++|++|. +++.|. +.++.. .+...++.. ++.....+|.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~-----~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEE-----VVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 346899999999999877753 35999999874 344333 235432 233333321 222223467765
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
... ..+...+|.++.|+|+|||+|++....
T Consensus 115 ~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 115 IEG-----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEC-----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 421 123468999999999999999998764
No 103
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.50 E-value=4.9e-07 Score=99.04 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=67.3
Q ss_pred HHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCC----cEEecCC
Q 044932 295 SIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFP----AVVSPLG 362 (689)
Q Consensus 295 ~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~----~i~~~~d 362 (689)
+|.+.+|. . ...+|||+|||+|.++..++.. .|+++|+++ .+++.|.+. +.. ..+...+
T Consensus 219 llL~~lp~-~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~-----~Av~~A~~N~~~n~~~~~~~v~~~~~D 289 (378)
T PRK15001 219 FFMQHLPE-N---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP-----MAVASSRLNVETNMPEALDRCEFMINN 289 (378)
T ss_pred HHHHhCCc-c---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHHHHcCcccCceEEEEEcc
Confidence 45555552 1 2358999999999999888753 589999876 355555432 221 1222222
Q ss_pred CCCCCCCCCCcceEEecccccc---cc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 363 NRRLPFPSGVFDAIHCDGCSIT---WH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~---W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
... .++..+||+|+|.-.+.. .. .....+|.++.|+|+|||.|++...
T Consensus 290 ~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 290 ALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred ccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 211 234568999999632211 01 1124789999999999999999863
No 104
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=4.8e-07 Score=99.89 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC--CCCCCcceEEe---
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP--FPSGVFDAIHC--- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP--FpD~SFDlVhc--- 378 (689)
...+|||+|||+|..+..++.. .|+++|+++.... .+.+.+...|+...+...|+..++ ++.++||+|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~-~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLE-RVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3568999999999988777642 5899998874221 122222333655455555665554 45678999984
Q ss_pred -cccc-------ccccccH----------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHh
Q 044932 379 -DGCS-------ITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTAS 427 (689)
Q Consensus 379 -s~cl-------i~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~ 427 (689)
+... +.|.... ..+|..+.++|||||++++++-.-.. +....+..++++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 3211 1232222 26899999999999999998743322 222335555544
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.46 E-value=9.5e-07 Score=87.83 Aligned_cols=92 Identities=20% Similarity=0.112 Sum_probs=60.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
+..+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++.. .+...+......+.++||+|++..
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~-----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIK-----TLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCH-----HHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc
Confidence 3578999999999988766543 588999875 344444432 4432 233333322111347899999864
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. .+ .+..++.+.|+|||.+++...
T Consensus 153 ~-~~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 A-AP------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-ch------hhhHHHHHhcCCCcEEEEEEc
Confidence 3 22 345678899999999998765
No 106
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.45 E-value=8.3e-07 Score=92.75 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=85.9
Q ss_pred cCCCCcccchhHHHHHHHHHhhcccccCC--CCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC
Q 044932 278 FPQNQSEFKGGVLHYLESIEEMVPDIEWG--KNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG 353 (689)
Q Consensus 278 Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G--~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG 353 (689)
+-|.|.||--...+|.++|..- ...+. ....++||||+|.|..+..|+.. .|.+..+|+ .|.....+||
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~--~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~-----~Mr~rL~~kg 136 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRIS--GFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASP-----PMRWRLSKKG 136 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhh--ccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCH-----HHHHHHHhCC
Confidence 4567778776667776665521 11121 14578999999999999998763 688888775 5777777888
Q ss_pred CCcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 354 FPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 354 L~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.... +.....-.+..||+|.|.. ++.=+.+|..+|.+|++.|+|+|++++..
T Consensus 137 ~~vl----~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 137 FTVL----DIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CeEE----ehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 7533 1112222356899999864 44446788999999999999999999984
No 107
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.45 E-value=1.5e-06 Score=91.43 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|++ .++. ..+...|.. -++++++||+|+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~-----al~~A~~n~~~~~~~~~i~~~~~D~~-~~~~~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPD-----ALAVAEINIERHGLEDRVTLIQSDLF-AALPGRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEECchh-hccCCCCccEEEE
Confidence 468999999999998888753 5899999864 4444443 3553 223334432 1355678999998
Q ss_pred cc-----ccc-----ccccc--------------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 379 DG-----CSI-----TWHAH--------------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 379 s~-----cli-----~W~~d--------------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.- ..+ .+..+ ...++.++.++|+|||++++...... ..+..++...+|.-..
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~----~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM----EALEEAYPDVPFTWLE 271 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH----HHHHHHHHhCCCceee
Confidence 41 000 00001 13568899999999999998766422 3466777766654443
No 108
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.41 E-value=1.2e-06 Score=96.69 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=72.9
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEE--ecCCCCCCCC--CCCCcceEEe-
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVV--SPLGNRRLPF--PSGVFDAIHC- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~--~~~dt~~LPF--pD~SFDlVhc- 378 (689)
...+|||+|||+|+.+..++. ..|+++|+++... ..+.+.+...|+...+ ...+...+++ ++++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 347899999999998876654 3599999887422 1222223334665323 3344444444 5688999984
Q ss_pred ---cc-ccc------ccccc----------HHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHh
Q 044932 379 ---DG-CSI------TWHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTAS 427 (689)
Q Consensus 379 ---s~-cli------~W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~ 427 (689)
+. ..+ .|... ...+|.++.|+|||||+|++++-.-..+ ....+..+++.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 32 111 12211 2468999999999999999997543332 22335555554
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.41 E-value=6.8e-06 Score=85.01 Aligned_cols=117 Identities=18% Similarity=0.130 Sum_probs=72.3
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCC-CCCC-CCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNR-RLPF-PSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~-~LPF-pD~SFDlVhc 378 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++ .+...|.. .++- ..+.||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~-----al~~A~~N~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPA-----AVRCARRNLADAGG--TVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCC--EEEEeechhhcchhcCCCEeEEEE
Confidence 35899999999999877763 25899998874 4444443 233 22223322 1221 1257999997
Q ss_pred cccccc------------cc---------ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 379 DGCSIT------------WH---------AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 379 s~cli~------------W~---------~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.-=.++ ++ .+. ..++..+.++|+|||+|++....... ..+..++...+|...
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~---~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA---PLAVEAFARAGLIAR 236 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH---HHHHHHHHHCCCCce
Confidence 521110 00 011 25666777999999999998765433 347777877788664
Q ss_pred Ee
Q 044932 434 AH 435 (689)
Q Consensus 434 ~~ 435 (689)
..
T Consensus 237 ~~ 238 (251)
T TIGR03704 237 VA 238 (251)
T ss_pred ee
Confidence 43
No 110
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=3.4e-06 Score=93.43 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=75.6
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC----CCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP----FPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP----FpD~SFDlVh 377 (689)
...+|||+|||+|..+..++.. .|+++|+++... ..+.+.+...|+.. .+...|+..++ +.+++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3468999999999988766542 489999876422 12222233346643 34455665555 5568999998
Q ss_pred e----cc-cccc------cccc----------HHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHhc-cee
Q 044932 378 C----DG-CSIT------WHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTASI-CWN 431 (689)
Q Consensus 378 c----s~-cli~------W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~l-~W~ 431 (689)
+ ++ ..+. |... ...+|.++.++|||||+|+.++-.-..+ ....+..+++.. .|+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 5 32 1111 2111 2467999999999999999887443332 233455666554 454
No 111
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=3.5e-06 Score=93.66 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=73.7
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEe----
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHC---- 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhc---- 378 (689)
..+|||+|||+|..+..++. ..|+++|+++... ....+.+.+.|+.. .+...++..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 46899999999987766553 2599999987432 12223333446653 34455555554 5678999984
Q ss_pred cccc-------ccccccH----------HHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHh
Q 044932 379 DGCS-------ITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTAS 427 (689)
Q Consensus 379 s~cl-------i~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~ 427 (689)
+... +.|...+ ..+|.++.++|||||++++++-.-..++ ...+..+++.
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 3211 1233222 2589999999999999999985433332 3345566654
No 112
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.35 E-value=2.9e-06 Score=70.64 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=63.5
Q ss_pred EEEECCccch--hHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC----CC-cEEecCCCC--CCCCCC-CCcceEEec
Q 044932 312 VLEIGSADLS--FVASLLAK--EVLTLTVGLKDDLVDLAQVALERG----FP-AVVSPLGNR--RLPFPS-GVFDAIHCD 379 (689)
Q Consensus 312 VLDVGCGtGs--faa~La~~--~V~gmDIsp~D~seamlq~A~eRG----L~-~i~~~~dt~--~LPFpD-~SFDlVhcs 379 (689)
+||+|||+|. +...+... .++++|+++. ++..+.... .. ..+...+.. .+||.+ ..||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPE-----MLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHH-----HHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 44444443 5677777653 333333222 11 122333333 378887 499999 76
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.+..++.. ....+.++.|+|+|+|.+++.....
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 126 LLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 66655444 6789999999999999999987653
No 113
>PRK04457 spermidine synthase; Provisional
Probab=98.34 E-value=9.6e-06 Score=84.48 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=70.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc-CCC-----cEEec
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER-GFP-----AVVSP 360 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR-GL~-----~i~~~ 360 (689)
.|...+...+.. . ...++|||||||+|.++.+++. ..|+++|++| .+++.|.+. +.+ ..+..
T Consensus 52 ~y~~~m~~~l~~-~--~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp-----~vi~~A~~~f~~~~~~~rv~v~~ 123 (262)
T PRK04457 52 AYTRAMMGFLLF-N--PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP-----QVIAVARNHFELPENGERFEVIE 123 (262)
T ss_pred HHHHHHHHHHhc-C--CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHHHcCCCCCCCceEEEE
Confidence 566655443321 1 1467899999999999887764 2589999886 467777664 221 22333
Q ss_pred CCCCC-CCCCCCCcceEEeccc---cccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 361 LGNRR-LPFPSGVFDAIHCDGC---SITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 361 ~dt~~-LPFpD~SFDlVhcs~c---li~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.|+.. ++-...+||+|++... .++.+..-..++.++.++|+|||.|++..
T Consensus 124 ~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 124 ADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 44321 2212368999987421 11111122589999999999999999853
No 114
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.34 E-value=3.5e-06 Score=84.44 Aligned_cols=121 Identities=19% Similarity=0.267 Sum_probs=79.4
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEeccc--
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGC-- 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~c-- 381 (689)
.+|||+|||.|.+...|+.. ..+|+|.++.-+ +-+..+|.+++++ ..+.++|...-.|-.+.||+|+--..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 48999999999999889864 378899887522 2233455566777 44556665443566788998874211
Q ss_pred ccccc-----ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 382 SITWH-----AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 li~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.|..+ ..+..++--+.++|+|||+|+|..=.... ++|.+.....++....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---DELVEEFENFNFEYLS 202 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH---HHHHHHHhcCCeEEEE
Confidence 11111 12346788899999999999998765433 3355666666665543
No 115
>PRK00811 spermidine synthase; Provisional
Probab=98.33 E-value=3.8e-06 Score=88.27 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC----CcEEecCCCCC-CCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF----PAVVSPLGNRR-LPFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL----~~i~~~~dt~~-LPFpD~S 372 (689)
..++||+||||+|.++..++.+ .|+++++++ .+++.|++. +. ...+...|+.. +...+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-----~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-----RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-----HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 4689999999999999888764 378888876 455555542 11 12233344322 2334689
Q ss_pred cceEEecccccccccc----HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 373 FDAIHCDGCSITWHAH----GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 373 FDlVhcs~cli~W~~d----~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|++... -++... ...++..+.|+|+|||.+++....
T Consensus 151 yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 151 FDVIIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred ccEEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999997432 222211 246788999999999999987544
No 116
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.33 E-value=3.1e-06 Score=90.08 Aligned_cols=111 Identities=13% Similarity=0.137 Sum_probs=70.3
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEec
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++. ..+...|... ++++++||+|+|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~-----al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPD-----ALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 58999999999998887743 5899999874 4444433 3543 2333344321 3456789999985
Q ss_pred ccc------------ccccc--------c----HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcce
Q 044932 380 GCS------------ITWHA--------H----GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICW 430 (689)
Q Consensus 380 ~cl------------i~W~~--------d----~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W 430 (689)
--. +.+.+ + ...++.++.++|+|||++++..... +..+..++...++
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----~~~~~~~~~~~~~ 279 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----RVHLEEAYPDVPF 279 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----HHHHHHHHhhCCC
Confidence 100 01110 1 1367889999999999999975543 2236666665544
No 117
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.31 E-value=5.8e-06 Score=93.67 Aligned_cols=283 Identities=19% Similarity=0.197 Sum_probs=144.8
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++.. .+...+.. -+++.++||+|+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~-----al~~A~~N~~~~~l~~~v~~~~~D~~-~~~~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLD-----AIEVAKSNAIKYEVTDRIQIIHSNWF-ENIEKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHH-----HHHHHHHHHHHcCCccceeeeecchh-hhCcCCCccEEEE
Confidence 45899999999998877763 35999999863 4444443 34432 22223321 1345678999998
Q ss_pred cccccc-------------cc--------ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 379 DGCSIT-------------WH--------AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 379 s~cli~-------------W~--------~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.--.+. +. .+. ..++.++.++|+|||.|++..... ..+.+..++...+|..+
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHhcCCCce
Confidence 421110 00 011 235678889999999999865432 22357777777788654
Q ss_pred EeeccccCceeEEEEEe-CCCchhHhhhhCCCCCCCCCCCCCCCccccccccccccCCccccccCCCCCCCCccccccCC
Q 044932 434 AHKTDEISEMGVKIYQK-PESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYP 512 (689)
Q Consensus 434 ~~~~~~~g~~~i~IwqK-p~~~~cy~~r~~~~p~~C~~~~d~d~~Wy~~l~~Ci~~~p~~~~~~~~~~~~~wP~Rl~~~p 512 (689)
....+-.|...+++.-- .++. -|..|+.. ++.... .+ .+-.-||.-+-
T Consensus 290 ~~~~D~~g~~R~v~~~~~~~~r-s~~rr~g~------------------------~~~~~q-~~--~~e~~~p~~~i--- 338 (506)
T PRK01544 290 SVYKDLQGHSRVILISPINLNR-SYARRIGK------------------------SLSGVQ-QN--LLDNELPKYLF--- 338 (506)
T ss_pred EEEecCCCCceEEEeccccCCc-ceeccCCC------------------------CCCHHH-HH--HHHhhhhhhCC---
Confidence 33222112111111110 0000 00000000 000000 00 00112333221
Q ss_pred CccCchhhhhhhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-----CCchhhhh
Q 044932 513 DWLNDKEKLSSDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-----PDTLPVIY 587 (689)
Q Consensus 513 ~rl~~~e~f~~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-----~~tL~vI~ 587 (689)
+.+ + + ++ ..-..++|+++|.|+|.++|....-- .|++=+.- -..+..+.
T Consensus 339 ----~~e--------------k-----l-f~-~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~ 392 (506)
T PRK01544 339 ----SKE--------------K-----L-VN-EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAG 392 (506)
T ss_pred ----CHH--------------H-----h-CC-CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHH
Confidence 000 0 0 12 23578999999999999999754211 13332221 12344556
Q ss_pred ccccchhhccccCCC----CCCC-ccchhhccccccc-cc------cCCcCCccceeeeeccccccCcEEEEe-CchhhH
Q 044932 588 DRGLVGIYHDWCESF----GTYP-RSYDLLHADHLFS-RL------KSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEIL 654 (689)
Q Consensus 588 ~RGLig~yhdwce~f----~typ-rTyDLlHa~~lfs-~~------~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l 654 (689)
.+||-.+.. +|..+ ..|| .+.|-||-. |. .| +.|=- -...|-+|-|+|+|||.+.++ |..++.
T Consensus 393 ~~~l~N~~~-~~~~~~~~~~~~~~~sv~~i~i~--FPDPWpKkrh~krRl~-~~~fl~~~~~~Lk~gG~i~~~TD~~~y~ 468 (506)
T PRK01544 393 EQNITNFLL-FPNNLDLILNDLPNNSLDGIYIL--FPDPWIKNKQKKKRIF-NKERLKILQDKLKDNGNLVFASDIENYF 468 (506)
T ss_pred HcCCCeEEE-EcCCHHHHHHhcCcccccEEEEE--CCCCCCCCCCcccccc-CHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 666533321 23222 2233 556665532 22 23 33333 256788999999999999888 666666
Q ss_pred HHHHHHH
Q 044932 655 DPLEGIL 661 (689)
Q Consensus 655 ~~v~~i~ 661 (689)
..+...+
T Consensus 469 ~~~~~~~ 475 (506)
T PRK01544 469 YEAIELI 475 (506)
T ss_pred HHHHHHH
Confidence 6554444
No 118
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.29 E-value=2.7e-06 Score=91.79 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=60.2
Q ss_pred CCCeEEEECCccch-hHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcC---------------CCcEEecCCC--C---
Q 044932 308 NIRVVLEIGSADLS-FVASLLA--KEVLTLTVGLKDDLVDLAQVALERG---------------FPAVVSPLGN--R--- 364 (689)
Q Consensus 308 ~~R~VLDVGCGtGs-faa~La~--~~V~gmDIsp~D~seamlq~A~eRG---------------L~~i~~~~dt--~--- 364 (689)
...+|||||||-|+ +.-+... ..++|+|++.. .++.|.+|- ..+.+...|. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~-----si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEE-----SIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HH-----HHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHH-----HHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 46799999999886 4444433 24889999864 333444331 2223333332 1
Q ss_pred -CCCCCCCCcceEEeccccccccc---cHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 365 -RLPFPSGVFDAIHCDGCSITWHA---HGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 365 -~LPFpD~SFDlVhcs~cli~W~~---d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.++.....||+|-|.++++.-.. ....+|..+...|||||+|+.+.|..
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 22333459999999765533222 23468999999999999999999864
No 119
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.28 E-value=4.3e-06 Score=85.97 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=66.6
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH-----------------cCCCcEEecCCCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE-----------------RGFPAVVSPLGNRRLPFP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e-----------------RGL~~i~~~~dt~~LPFp 369 (689)
..+||+.|||.|.-+.+|++. .|+|+|+|+. .++.+.+ ++....+.+.|.-.|+..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~-----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK-----AVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHH-----HHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 468999999999999999876 5999999874 2333222 233344555665556532
Q ss_pred ---CCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 370 ---SGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 370 ---D~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
-+.||+|+-. .|.++ ......+..-|.++|+|||.+++..
T Consensus 119 ~~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2589998743 34444 2345789999999999999888763
No 120
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.26 E-value=4.3e-06 Score=83.67 Aligned_cols=120 Identities=22% Similarity=0.307 Sum_probs=75.1
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEE-ecCCCCC-CC--CCCCCcceEEeccc
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVV-SPLGNRR-LP--FPSGVFDAIHCDGC 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~-~~~dt~~-LP--FpD~SFDlVhcs~c 381 (689)
..+||||||.|.|...++. ..++|+++...-+ ...+..+..+++..+. ...++.. |+ ++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 4899999999999888874 4689999887433 3445556666877653 3344433 22 56799999986532
Q ss_pred ccccccc--------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHh--cceeEE
Q 044932 382 SITWHAH--------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTAS--ICWNIL 433 (689)
Q Consensus 382 li~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~--l~W~~v 433 (689)
-||... -..+|.++.|+|+|||.|.+.+-...+.. .+.+.+.. -+|+.+
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~--~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAE--WMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHH--HHHHHHHHHSTTEEEE
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHH--HHHHHHHhcCcCeEEc
Confidence 244421 14789999999999999999876543322 13333333 466655
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.26 E-value=3.4e-06 Score=90.67 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=61.2
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.+++.++.. .|+++|+++. +++.|++ .|+.. .+...+....+.....||+|++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~-----~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK-----ICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEE
Confidence 468999999999998877642 3889998863 4444443 35542 2334454444444578999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.... + .....+.++|+|||.+++...
T Consensus 156 ~~g~-~------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 156 TVGV-D------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CCch-H------HhHHHHHHhcCCCCEEEEEeC
Confidence 6322 2 234467889999999988653
No 122
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.5e-05 Score=85.06 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=69.2
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNR 364 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~ 364 (689)
.+.|.+.+|. .. ..+|||+|||.|-+++.|+.. .++-+|++. .+++.|++ .++.......+..
T Consensus 147 S~lLl~~l~~-~~---~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~-----~Av~~ar~Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 147 SRLLLETLPP-DL---GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA-----RAVESARKNLAANGVENTEVWASNL 217 (300)
T ss_pred HHHHHHhCCc-cC---CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH-----HHHHHHHHhHHHcCCCccEEEEecc
Confidence 4556666663 22 238999999999999988864 466667654 45555544 3555421112223
Q ss_pred CCCCCCCCcceEEeccccccccc-------cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 365 RLPFPSGVFDAIHCDGCSITWHA-------HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~cli~W~~-------d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
-.+..+ +||+|+|.- |+|. -...++.+..+.|++||.|.|...
T Consensus 218 ~~~v~~-kfd~IisNP---Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 YEPVEG-KFDLIISNP---PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccc-cccEEEeCC---CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 445554 999999863 2222 123788999999999999988775
No 123
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.24 E-value=1.2e-05 Score=81.65 Aligned_cols=153 Identities=21% Similarity=0.275 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--Ce--EEEEcCCcccHHHHHHHHHHcCCCcEEe--cCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EV--LTLTVGLKDDLVDLAQVALERGFPAVVS--PLGN 363 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V--~gmDIsp~D~seamlq~A~eRGL~~i~~--~~dt 363 (689)
+..++.|.++++. ...+||+||||||..+.+++.. .+ ...|+++... ....+.+.+.+++.+.. .+|.
T Consensus 12 ~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 12 DPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeec
Confidence 3556777777762 1226999999999988777753 11 2233333210 11222234445543321 1222
Q ss_pred CC--CC------CCCCCcceEEeccc--cccccccHHHHHHHHHhccCCCcEEEEEcCC---------Cc----------
Q 044932 364 RR--LP------FPSGVFDAIHCDGC--SITWHAHGGKLLLEMNRILRPSGYFILSTKH---------DS---------- 414 (689)
Q Consensus 364 ~~--LP------FpD~SFDlVhcs~c--li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~---------~~---------- 414 (689)
.. .| +...+||+|+|... .++|. .-..+|.+..++|+|||.|++-+|- ..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 22 22 23569999998742 23332 3467899999999999999998752 00
Q ss_pred -----hhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 415 -----IEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 415 -----le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
+.+.+.+..++...++.......-. ..+.++||+|
T Consensus 165 dp~~GiRD~e~v~~lA~~~GL~l~~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 165 DPEWGIRDIEDVEALAAAHGLELEEDIDMP-ANNLLLVFRK 204 (204)
T ss_pred CCCcCccCHHHHHHHHHHCCCccCcccccC-CCCeEEEEeC
Confidence 0122568999999999875432211 2345888887
No 124
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.23 E-value=5.4e-07 Score=92.78 Aligned_cols=125 Identities=17% Similarity=0.244 Sum_probs=94.5
Q ss_pred CCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHc---CCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALER---GFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eR---GL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
....++|||||.|..+..|...+ ++-||.+ ..|++.++.. ++...+.+.|.+.|+|.+++||+|+++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS-----~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl- 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTS-----YDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL- 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecc-----hHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-
Confidence 45689999999999999998875 4666655 4677776654 4555667888899999999999999774
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCc-----------------------h---hHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDS-----------------------I---EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~-----------------------l---e~~~~ie~La~~l~W~~v~~ 435 (689)
.+||..+....+..+.-.|||.|.|+-+.-... + -....+-.|+.+.+|..+..
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 569999999999999999999999997742210 0 11234666777778877666
Q ss_pred ecc
Q 044932 436 KTD 438 (689)
Q Consensus 436 ~~~ 438 (689)
+++
T Consensus 226 DtD 228 (325)
T KOG2940|consen 226 DTD 228 (325)
T ss_pred ccc
Confidence 555
No 125
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=3.4e-06 Score=87.42 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=66.9
Q ss_pred CeEEEECCccchhHHHhhcC------CeEEEEcCCcccHHHHHHHHHHcC------CCcEEecCCCC--CCCCCCCCcce
Q 044932 310 RVVLEIGSADLSFVASLLAK------EVLTLTVGLKDDLVDLAQVALERG------FPAVVSPLGNR--RLPFPSGVFDA 375 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~------~V~gmDIsp~D~seamlq~A~eRG------L~~i~~~~dt~--~LPFpD~SFDl 375 (689)
.+||+||||.|....-|+.. .|.+.|++|. ++....++. ..+.+..++.. .-|...+++|+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcccceeccchhccCCCCcCccce
Confidence 38999999999865545432 3888898874 444444331 12222333332 33567799999
Q ss_pred EEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|++.+++..-+ +....++..++|+|||||.+++.|-.
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 99887664433 34568999999999999999999743
No 126
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.2e-05 Score=82.83 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=79.6
Q ss_pred eEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 311 VVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
+|||||||+|..|.+|+.. .|+++|++|. +++.|. ..|+...+......--++. +.||+|+|+-=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~-----Al~~A~~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPD-----ALALARENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHH-----HHHHHHHHHHHcCCccEEEEeeecccccC-CceeEEEeCCCC
Confidence 7999999999998888753 5999999873 444444 3465222221111111233 489999985211
Q ss_pred cccc--------------------cc----HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcc-eeEEEeec
Q 044932 383 ITWH--------------------AH----GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASIC-WNILAHKT 437 (689)
Q Consensus 383 i~W~--------------------~d----~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~-W~~v~~~~ 437 (689)
++-. .+ ...++.++.++|+|||.+++....... ..+.++....+ +..+....
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHHhcCCceEEEEEe
Confidence 1100 01 124677899999999999998765433 34778888888 44443333
Q ss_pred cccCceeEEEEEe
Q 044932 438 DEISEMGVKIYQK 450 (689)
Q Consensus 438 ~~~g~~~i~IwqK 450 (689)
+-++...+.+.++
T Consensus 264 d~~g~~rv~~~~~ 276 (280)
T COG2890 264 DLFGRDRVVLAKL 276 (280)
T ss_pred cCCCceEEEEEEe
Confidence 3344444555443
No 127
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.21 E-value=4.9e-06 Score=84.22 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=67.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
+.++|||||+|+|.++..++.+ .++.+|+ +..++.+.+ .-...+...|.. -|+|. +|+++..+++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 5689999999999999888753 4777776 345555555 222334344443 56784 99999998888
Q ss_pred cccc-cHHHHHHHHHhccCCC--cEEEEEcC
Q 044932 384 TWHA-HGGKLLLEMNRILRPS--GYFILSTK 411 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPG--G~fVIsdp 411 (689)
.|.+ +-..+|+.+++.|+|| |.++|.+.
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 8875 3468899999999999 99999874
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.21 E-value=7.1e-06 Score=85.23 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=72.0
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEe---
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHC--- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhc--- 378 (689)
...+|||+|||+|..+..++. ..|+++|+++... ..+.+.+...|+.. .+...|+..++...+.||.|++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 346899999999998876653 2489999886422 11222233346543 3344555556655677999985
Q ss_pred -ccc-cc--------cccc--------cHHHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHh
Q 044932 379 -DGC-SI--------TWHA--------HGGKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTAS 427 (689)
Q Consensus 379 -s~c-li--------~W~~--------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~ 427 (689)
+.. .+ .|.. .-..+|..+.++|||||+++.++-.-..++ ..-++.+++.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 211 00 1111 113488899999999999999975433332 3345555543
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.21 E-value=5.4e-06 Score=92.08 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=72.9
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC-CCCCCcceEEe--
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP-FPSGVFDAIHC-- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP-FpD~SFDlVhc-- 378 (689)
...+|||+|||+|+.+.+++. ..|+++|+++... ..+.+.+.+.|+.. .+...|+..++ +.+++||+|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 346899999999987766553 2499999986422 12223333446653 34456666666 55689999986
Q ss_pred --ccc-ccc------cccc----------HHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHH
Q 044932 379 --DGC-SIT------WHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTA 426 (689)
Q Consensus 379 --s~c-li~------W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~ 426 (689)
+.. .+. |... -..+|..+.++|||||++++++-.-..+ ....++.+++
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 211 111 1111 1356889999999999999987543332 2233555544
No 130
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.18 E-value=5.7e-06 Score=86.18 Aligned_cols=135 Identities=15% Similarity=0.233 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCc
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFPA 356 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~ 356 (689)
|.-+.+.- .|..+++.. ...+|||+|||+|..+..|+.+ .+.++++.+. +.++|.+. ++..
T Consensus 27 ~~~~~Dai--LL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~-----~a~~A~~nv~ln~l~~ 95 (248)
T COG4123 27 FRYGTDAI--LLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEE-----AAEMAQRNVALNPLEE 95 (248)
T ss_pred cccccHHH--HHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHH-----HHHHHHHHHHhCcchh
Confidence 44455533 355555421 3578999999999998888865 4888988763 44454432 2222
Q ss_pred E--EecCCCCCC--CCCCCCcceEEecc---------cc------ccc--cccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 357 V--VSPLGNRRL--PFPSGVFDAIHCDG---------CS------ITW--HAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 357 i--~~~~dt~~L--PFpD~SFDlVhcs~---------cl------i~W--~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
. +...|...+ ++.-.+||+|+|.- |- -+| .-+.+..++-..++|||||+|++.-++..+
T Consensus 96 ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl 175 (248)
T COG4123 96 RIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL 175 (248)
T ss_pred ceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH
Confidence 2 233343222 23334899999951 00 001 113456778888999999999999998655
Q ss_pred hHHHHHHHHHHhcceeEE
Q 044932 416 EEEEALTTLTASICWNIL 433 (689)
Q Consensus 416 e~~~~ie~La~~l~W~~v 433 (689)
.+ +.+++.++.|...
T Consensus 176 ~e---i~~~l~~~~~~~k 190 (248)
T COG4123 176 AE---IIELLKSYNLEPK 190 (248)
T ss_pred HH---HHHHHHhcCCCce
Confidence 43 7788888888764
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.16 E-value=7.9e-06 Score=78.80 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--C-CcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--F-PAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L-~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||+|||+|.++..++.+ .|+++|+++ .+++.+.++- . ...+...|...+++++..||.|++..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~-----~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-- 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDP-----RLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-- 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCH-----HHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC--
Confidence 3468999999999999988865 589999886 3555555441 1 23344566778888887899998642
Q ss_pred ccccccHHHHHHHHHh--ccCCCcEEEEEc
Q 044932 383 ITWHAHGGKLLLEMNR--ILRPSGYFILST 410 (689)
Q Consensus 383 i~W~~d~~~aL~EI~R--VLRPGG~fVIsd 410 (689)
+++.. ...+..+.. .+.++|+|++.-
T Consensus 86 -Py~~~-~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 86 -PYNIS-TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred -CcccH-HHHHHHHHhcCCCcceEEEEEEH
Confidence 32211 123333332 245888888874
No 132
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.15 E-value=8.6e-06 Score=83.78 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=78.4
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCC-CcEEecCCCCCC-C--CCCCCcceEEeccc
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGF-PAVVSPLGNRRL-P--FPSGVFDAIHCDGC 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL-~~i~~~~dt~~L-P--FpD~SFDlVhcs~c 381 (689)
..+||||||.|.|...++.. +++||++... ....++..+.+.++ ...+...|+..+ . ++++|+|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~-~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP-GVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999888864 5899998764 33566777888899 655665665332 2 56669999986543
Q ss_pred cccccccH--------HHHHHHHHhccCCCcEEEEEcCCCchhH
Q 044932 382 SITWHAHG--------GKLLLEMNRILRPSGYFILSTKHDSIEE 417 (689)
Q Consensus 382 li~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~le~ 417 (689)
-+|+... ...|.++.|+|+|||.|.+.+-...+..
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e 171 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFE 171 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHH
Confidence 3676422 4789999999999999999887654433
No 133
>PHA03411 putative methyltransferase; Provisional
Probab=98.13 E-value=1.6e-05 Score=84.13 Aligned_cols=118 Identities=8% Similarity=0.011 Sum_probs=75.9
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..++. ..|+++|+++ .|++.|+++-....+...|...++ .+.+||+|++.-...+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence 35899999999998876654 3589999886 577777665222334445555443 3478999998422211
Q ss_pred --------cccc-----------HHHHHHHHHhccCCCcEEEEEc--CCCch--hHHHHHHHHHHhcceeE
Q 044932 385 --------WHAH-----------GGKLLLEMNRILRPSGYFILST--KHDSI--EEEEALTTLTASICWNI 432 (689)
Q Consensus 385 --------W~~d-----------~~~aL~EI~RVLRPGG~fVIsd--p~~~l--e~~~~ie~La~~l~W~~ 432 (689)
|... ....+....++|+|+|.+++.- .+-+. ...+++..+++..++..
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 1001 2467788899999999776652 22111 12356778888888865
No 134
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.13 E-value=6.5e-06 Score=88.33 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc-----------CCCcEEecCCC------CCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER-----------GFPAVVSPLGN------RRLP 367 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR-----------GL~~i~~~~dt------~~LP 367 (689)
.+..+||+|||-|+=....-.. .++++||+... ++.|..| -.++.+.++|. ..++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevS-----I~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVS-----INQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhcc-----HHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 4578999999999743332222 47899998643 3333332 12334444442 4567
Q ss_pred CCCCCcceEEecccccc-cc--ccHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 368 FPSGVFDAIHCDGCSIT-WH--AHGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~-W~--~d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
++|.+||+|-|.+|++. |. +....+|+.+.+.|||||+||-+.|...
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 88888999999766422 32 2345789999999999999999988754
No 135
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.09 E-value=5.2e-05 Score=78.10 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCC-----CCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNR-----RLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~-----~LPFpD~SFDlVhc 378 (689)
...+|||+|||||.|+..|+.. .|+++|+++. |+...+....... +...+.. .++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~-----~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN-----QLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH-----HHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3578999999999999988865 4899998763 4443333222211 2222222 22212236777766
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+.+ ..|..+.+.|+| |.+++...|
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcCh
Confidence 542 368899999999 888876554
No 136
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.07 E-value=2.1e-05 Score=80.16 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=74.4
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHH-HHcCCCc----------------EEecCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVA-LERGFPA----------------VVSPLGNRRLPF 368 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A-~eRGL~~----------------i~~~~dt~~LPF 368 (689)
...+||..|||.|.-..+|++++ |+|+|+|+ .+++.+ .++++.. .+.+.|.-.++-
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP-----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H-----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH-----HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 34589999999999888888764 99999986 345554 4444311 112333333332
Q ss_pred CC-CCcceEEe--ccccccccccHHHHHHHHHhccCCCcEEEEEc--C-------CCchhHHHHHHHHHHhcceeEEE
Q 044932 369 PS-GVFDAIHC--DGCSITWHAHGGKLLLEMNRILRPSGYFILST--K-------HDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 369 pD-~SFDlVhc--s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd--p-------~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.+ +.||+|+= +.|.++ ......+..-|.++|+|||.+++.. . |++.-..+++.++.. -+|++..
T Consensus 112 ~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred hhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence 22 47999983 456666 4566789999999999999944432 1 122223456888877 5776643
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=98.07 E-value=1.3e-05 Score=83.31 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=58.5
Q ss_pred CCeEEEECCccchhHHHhhc-------CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc-
Q 044932 309 IRVVLEIGSADLSFVASLLA-------KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG- 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-------~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~- 380 (689)
..+|||+|||+|.++..++. ..|+++|+++ .+++.|++......+...|....++ +.+||+|++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~-----~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH-----TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH-----HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 35899999999999876653 2588999876 4667776543233444455544455 47999999851
Q ss_pred -cccc---cc------ccHHHHHHHHHhccCCCcE
Q 044932 381 -CSIT---WH------AHGGKLLLEMNRILRPSGY 405 (689)
Q Consensus 381 -cli~---W~------~d~~~aL~EI~RVLRPGG~ 405 (689)
.-+. +. .-...++....|+|+||+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1001 00 0123477788888887775
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.07 E-value=1.6e-05 Score=88.35 Aligned_cols=118 Identities=22% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCC--CCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRL--PFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~L--PFpD~SFDlVhcs 379 (689)
+..+|||+|||+|.++..++. ..|+++|+++... ..+.+.+...|+.. .+...|...+ +++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 346899999999998877664 2489999886422 11222233346543 3334555444 245 789999863
Q ss_pred c-cc----------ccccccH----------HHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHh
Q 044932 380 G-CS----------ITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTAS 427 (689)
Q Consensus 380 ~-cl----------i~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~ 427 (689)
. |. +.|.... ..+|.++.|+|||||++++++-.-..++ ...+..+++.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 1 11 1121111 2578999999999999998875433322 2335555554
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=98.06 E-value=5.5e-05 Score=82.93 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc--------C-C---CcEEecCCCCC-CCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER--------G-F---PAVVSPLGNRR-LPFPS 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR--------G-L---~~i~~~~dt~~-LPFpD 370 (689)
..++||++|||+|..+..++.. .|+++|+++ .+++.|+.. + + ...+...|+.. ++-.+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-----eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-----SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 5689999999999887777754 478888876 577777751 1 1 12223334322 33345
Q ss_pred CCcceEEecccccccc-----ccHHHHHHHHHhccCCCcEEEEEcCCCchh--HHHHHHHHHHhcceeE
Q 044932 371 GVFDAIHCDGCSITWH-----AHGGKLLLEMNRILRPSGYFILSTKHDSIE--EEEALTTLTASICWNI 432 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~~~le--~~~~ie~La~~l~W~~ 432 (689)
+.||+|++.... +.. ..-..++..+.+.|+|||.|++........ ....+...++..++..
T Consensus 225 ~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 225 SLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 789999975211 100 112468899999999999999886543221 1122444455554443
No 140
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.03 E-value=4.4e-05 Score=79.54 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-----C-C---CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-----G-F---PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-----G-L---~~i~~~~dt~~-LPFpD~SF 373 (689)
..++||+||||+|.++..++.. .|+++|+++. +++.|.+. + + ...+...|+.. +....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~-----vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK-----VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH-----HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 4569999999999988777653 4888888763 44444442 1 0 11122233211 11224799
Q ss_pred ceEEecccccccccc----HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHAH----GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~d----~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|++... .++... ...++..+.++|+|||.+++....
T Consensus 147 DvIi~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 147 DVIIVDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred cEEEEeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 99987532 111111 346788999999999999998554
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.98 E-value=3.1e-05 Score=79.41 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLG 362 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~d 362 (689)
..++..|.++. ..++|||+|||+|.-+.+|+. ..|+++|+++... ....+.+.+.|+.. .+...+
T Consensus 57 g~~L~~l~~~~-------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gd 128 (234)
T PLN02781 57 GLFLSMLVKIM-------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSD 128 (234)
T ss_pred HHHHHHHHHHh-------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcc
Confidence 34555555442 357899999999975544432 2599999987422 12222233346542 233333
Q ss_pred CCC-CC-----CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 363 NRR-LP-----FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 363 t~~-LP-----FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.. |+ .++.+||+|++-.. ......++.++.++|||||.+++..
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 321 22 12478999986421 1233478899999999999999754
No 142
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.97 E-value=1.3e-05 Score=81.39 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=55.1
Q ss_pred CCCeEEEECCccchhHHHhhc---C--CeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCC-CCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K--EVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPF-PSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~--~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPF-pD~SFDlV 376 (689)
+..+|||||||+|.+++.|+. . .|+++++.+. .++.|.++ ++.. .+...|.. ..+ ....||.|
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~-----l~~~A~~~l~~~~~~nv~~~~gdg~-~g~~~~apfD~I 145 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE-----LAERARRNLARLGIDNVEVVVGDGS-EGWPEEAPFDRI 145 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH-----HHHHHHHHHHHHTTHSEEEEES-GG-GTTGGG-SEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH-----HHHHHHHHHHHhccCceeEEEcchh-hccccCCCcCEE
Confidence 457999999999998876653 2 3788888763 33333332 5533 23333432 223 23689999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++.... . ..-..+.+.|++||++++-..
T Consensus 146 ~v~~a~-~------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 146 IVTAAV-P------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EESSBB-S------S--HHHHHTEEEEEEEEEEES
T ss_pred EEeecc-c------hHHHHHHHhcCCCcEEEEEEc
Confidence 986433 2 233567788999999998654
No 143
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.92 E-value=5.5e-05 Score=85.82 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEe-cCCCCCC--CCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVS-PLGNRRL--PFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~-~~dt~~L--PFpD~SFDlVhcs~ 380 (689)
....+||||||.|.|...++.. .++|+++...-. ..++..+.++++..... ..+...+ -|+++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4578999999999998888753 689999876422 33445556667765432 2232212 27899999998754
Q ss_pred cccccccc--------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeE
Q 044932 381 CSITWHAH--------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 381 cli~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~ 432 (689)
- -||... -..+|.++.|+|+|||.|.+.+-...+..+ .++.+.+.-+|+.
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~-~~~~~~~~~~f~~ 483 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE-AIELIQQNGNFEI 483 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH-HHHHHHhCCCeEe
Confidence 2 356431 147899999999999999998765433322 1333333334554
No 144
>PRK03612 spermidine synthase; Provisional
Probab=97.91 E-value=0.00011 Score=83.58 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-C--------C--C-cEEecCCCCC-CCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-G--------F--P-AVVSPLGNRR-LPFPS 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-G--------L--~-~i~~~~dt~~-LPFpD 370 (689)
..++|||+|||+|..+..++.+ .|+++|+++ .+++.|++. . + + ..+...|... +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~-----~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP-----AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH-----HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 4678999999999988777654 488888876 577777662 1 1 1 1223334322 22234
Q ss_pred CCcceEEecccccccccc-----HHHHHHHHHhccCCCcEEEEEcCCCch--hHHHHHHHHHHhcce
Q 044932 371 GVFDAIHCDGCSITWHAH-----GGKLLLEMNRILRPSGYFILSTKHDSI--EEEEALTTLTASICW 430 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d-----~~~aL~EI~RVLRPGG~fVIsdp~~~l--e~~~~ie~La~~l~W 430 (689)
++||+|++.. ..++... ...++..+.++|+|||.+++...+... .....+.+.++..++
T Consensus 372 ~~fDvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 7999999753 2222211 135788999999999999997654332 222345566666667
No 145
>PLN02366 spermidine synthase
Probab=97.91 E-value=6.5e-05 Score=80.44 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC---CcEEecCCCCC-C-CCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF---PAVVSPLGNRR-L-PFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL---~~i~~~~dt~~-L-PFpD~S 372 (689)
..++||+||||.|.++..++.+ .|+++++++ .+++.|++. ++ ...+...|+.. + ..+++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~-----~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK-----MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 4689999999999998888764 367778775 455555543 11 12233334311 1 123578
Q ss_pred cceEEecccccccccc----HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 373 FDAIHCDGCSITWHAH----GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 373 FDlVhcs~cli~W~~d----~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|++-. .-++... -..++..+.++|+|||.+++....
T Consensus 166 yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 166 YDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred CCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 99999742 2222211 236789999999999999886543
No 146
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.89 E-value=3.6e-05 Score=78.86 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=80.7
Q ss_pred CCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcC-----CCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERG-----FPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRG-----L~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...++||.|||.|..+..|+-.-.-.+|+.. ..+..++.|.+.- -...+...+.+..--+.+.||+|+|--|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVE--p~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVE--PVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEE--S-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEec--cCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4678999999999999877654333445442 2356777777531 11223344444443334799999998888
Q ss_pred ccccc-cHHHHHHHHHhccCCCcEEEEEcCC---C----------chhHHHHHHHHHHhcceeEEEeecc
Q 044932 383 ITWHA-HGGKLLLEMNRILRPSGYFILSTKH---D----------SIEEEEALTTLTASICWNILAHKTD 438 (689)
Q Consensus 383 i~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~---~----------~le~~~~ie~La~~l~W~~v~~~~~ 438 (689)
.|.++ +.-.+|.-....|+|+|+++|-+.. + +......+.+|.+..+++++....+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 77553 5578899999999999999997521 1 1112457999999999999887655
No 147
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.88 E-value=0.00035 Score=70.28 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCeEEEECCccchhHHHhh--c--CCeEEEEcCCcccHHHHHHHHHH-cCCCcEEec-CCC-CCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLL--A--KEVLTLTVGLKDDLVDLAQVALE-RGFPAVVSP-LGN-RRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~--~~V~gmDIsp~D~seamlq~A~e-RGL~~i~~~-~dt-~~LPFpD~SFDlVhcs~ 380 (689)
+..+++|||||||+.+..++ . ..|++++-++. ....++...+ -|++....+ .++ ..|+=.+ +||.|+...
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 45799999999999887666 2 25888887653 1223333333 366654332 222 3333222 899998765
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcce
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICW 430 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W 430 (689)
. .+...+|.-....|||||++++..-. ++....+.+.++.+++
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGG 153 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCC
Confidence 3 13458899999999999999997643 2333335566777788
No 148
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=3.2e-05 Score=80.49 Aligned_cols=100 Identities=20% Similarity=0.351 Sum_probs=66.4
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcC---------CC----cE----Ee-------
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERG---------FP----AV----VS------- 359 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRG---------L~----~i----~~------- 359 (689)
....+|||||-.|.+++.++. +.|+|+||++. .++.|.+.- +. +. +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~-----LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV-----LIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHH-----HHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 356799999999998887774 46999999874 455555421 00 00 00
Q ss_pred --------------------cCCCC-CCCCCCCCcceEEecc----ccccccccH-HHHHHHHHhccCCCcEEEEEcCC
Q 044932 360 --------------------PLGNR-RLPFPSGVFDAIHCDG----CSITWHAHG-GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 360 --------------------~~dt~-~LPFpD~SFDlVhcs~----cli~W~~d~-~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++... -|-+....||+|.|-. .++.|+++. -.+|.-+.|.|.|||+|++-..+
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP 211 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence 00000 0112356799999852 455676554 57899999999999999987654
No 149
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.86 E-value=8.4e-05 Score=87.36 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=70.9
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC---cEEecCCCCC-CCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP---AVVSPLGNRR-LPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~---~i~~~~dt~~-LPFpD~SFDlVh 377 (689)
.++|||+|||+|.|+.+++.. .|+++|+++. +++.|.+ .|+. ..+...|... |.-..++||+|+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~-----al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNT-----YLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEE
Confidence 478999999999999887753 3899998864 4444433 3553 2333344311 111147899999
Q ss_pred eccccc----------cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 378 CDGCSI----------TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 378 cs~cli----------~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+.--.+ ....+...++..+.++|+|||.|+++.-...... ....+...++...
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~---~~~~~~~~g~~~~ 676 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM---DEEGLAKLGLKAE 676 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh---hHHHHHhCCCeEE
Confidence 841100 0011234677888999999999998765433322 1344555566553
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.85 E-value=8.9e-05 Score=82.45 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCC----CCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNR----RLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~----~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++..|+.. .|+++|+++. |++.|.+ .++. ..+...+.. .+++++++||+|+
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~-----al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEA-----MVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHH-----HHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 468999999999999888754 5899998874 4444443 3553 233334432 3457678899998
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
+.- +... ....+..+.+ |+|++.++++..+..+.. .+..|. ..+|++..
T Consensus 373 ~dP---Pr~g-~~~~~~~l~~-~~~~~ivyvSCnp~tlaR--Dl~~L~-~~gY~l~~ 421 (443)
T PRK13168 373 LDP---PRAG-AAEVMQALAK-LGPKRIVYVSCNPATLAR--DAGVLV-EAGYRLKR 421 (443)
T ss_pred ECc---CCcC-hHHHHHHHHh-cCCCeEEEEEeChHHhhc--cHHHHh-hCCcEEEE
Confidence 742 2111 2245555555 699999999987654321 244443 34676643
No 151
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.84 E-value=8.3e-05 Score=79.11 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=69.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCC-CCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPF-PSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPF-pD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..|+.. .|+++|+++... +...+.+...++. ..+...+...+.. .++.||+|++.- +
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av-~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP---P 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAI-ACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP---P 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---C
Confidence 468999999999999988865 599999887422 1222333344664 3344455444322 346799998751 1
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.. .....+.++..-++|++.++++..+..+.. .+..+ -+|++.
T Consensus 250 r~-G~~~~~~~~l~~~~~~~ivyvsc~p~t~~r--d~~~l---~~y~~~ 292 (315)
T PRK03522 250 RR-GIGKELCDYLSQMAPRFILYSSCNAQTMAK--DLAHL---PGYRIE 292 (315)
T ss_pred CC-CccHHHHHHHHHcCCCeEEEEECCcccchh--HHhhc---cCcEEE
Confidence 11 111344455555789999999987765432 23333 367664
No 152
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.84 E-value=8.5e-05 Score=78.97 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=64.6
Q ss_pred CeEEEECCccch----hHHHhhc--------CCeEEEEcCCcccHHHHHHHHHHc--------CCCc-------------
Q 044932 310 RVVLEIGSADLS----FVASLLA--------KEVLTLTVGLKDDLVDLAQVALER--------GFPA------------- 356 (689)
Q Consensus 310 R~VLDVGCGtGs----faa~La~--------~~V~gmDIsp~D~seamlq~A~eR--------GL~~------------- 356 (689)
-+|+.+||.||. +|..|.+ ..|+|+||++ .+++.|++- +++.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~-----~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~ 191 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT-----EVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGP 191 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH-----HHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCC
Confidence 589999999994 4444433 2488888876 455555431 1110
Q ss_pred ---------------EEecCCCCCCCCC-CCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 357 ---------------VVSPLGNRRLPFP-SGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 357 ---------------i~~~~dt~~LPFp-D~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+...+....||+ .+.||+|+|..+++++.. ....++..+.+.|+|||+|++....
T Consensus 192 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 192 HEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 1112222232443 589999999877777543 4578999999999999999887654
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.7e-05 Score=76.09 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=58.9
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCcE-EecCCCCCCCCCC-CCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPAV-VSPLGNRRLPFPS-GVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~i-~~~~dt~~LPFpD-~SFDlVhcs 379 (689)
...+||+||||+|..++.|+.. .|++++..+ ...+.|+++ |+..+ +...|. ..-|+. ..||.|++.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~-----~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~~~~aPyD~I~Vt 145 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIE-----ELAEQARRNLETLGYENVTVRHGDG-SKGWPEEAPYDRIIVT 145 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcH-----HHHHHHHHHHHHcCCCceEEEECCc-ccCCCCCCCcCEEEEe
Confidence 4579999999999988877753 688888765 344555443 65433 333332 333544 789999875
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
... + .+=.-+.+-|+|||++++-.-
T Consensus 146 aaa-~------~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 146 AAA-P------EVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ecc-C------CCCHHHHHhcccCCEEEEEEc
Confidence 432 2 111245567999999998654
No 154
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.78 E-value=5.6e-05 Score=78.46 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHH----cCCCc---EEe
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALE----RGFPA---VVS 359 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~e----RGL~~---i~~ 359 (689)
+.|.+.+.+.-. .+.. ...+|||.+.|-|.+|+.-+.++ |+++..+|. .++.|.- +++.. .+.
T Consensus 118 dP~~Dt~~Kv~~-V~~~-~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~-----VLeLa~lNPwSr~l~~~~i~ii 190 (287)
T COG2521 118 DPLEDTLAKVEL-VKVK-RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN-----VLELAKLNPWSRELFEIAIKII 190 (287)
T ss_pred CcHHHHHhhhhe-eccc-cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC-----eEEeeccCCCCccccccccEEe
Confidence 445555554311 1221 45789999999999988777654 677776663 3444432 22211 111
Q ss_pred cCCCCCC--CCCCCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEc-CCC--c--hhHHHHHHHHHHhcce
Q 044932 360 PLGNRRL--PFPSGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILST-KHD--S--IEEEEALTTLTASICW 430 (689)
Q Consensus 360 ~~dt~~L--PFpD~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd-p~~--~--le~~~~ie~La~~l~W 430 (689)
..|+..+ .|+|.|||+|+-- +.++.-.-.-..+..|++|||||||.++--. .|. + +.-+..+.+.+.+.+|
T Consensus 191 lGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF 270 (287)
T COG2521 191 LGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGF 270 (287)
T ss_pred cccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCc
Confidence 1222111 3889999998631 2111111133578999999999999887654 232 1 1234567788899999
Q ss_pred eEEEeec
Q 044932 431 NILAHKT 437 (689)
Q Consensus 431 ~~v~~~~ 437 (689)
.++....
T Consensus 271 ~~v~~~~ 277 (287)
T COG2521 271 EVVKKVR 277 (287)
T ss_pred eeeeeeh
Confidence 9776543
No 155
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.77 E-value=4.4e-06 Score=70.30 Aligned_cols=89 Identities=25% Similarity=0.403 Sum_probs=59.5
Q ss_pred eecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhc----cccchhhccccCCCCCCCccchhhccccccccccCC
Q 044932 551 MDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYD----RGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 551 mDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~----RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
||+++|.|-+++.|.+. +.= |+-++.. ..+...-+ .++- +.+.=-+.++..+.+||+|++.++|..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~---v~~~D~~~~~~~~~~~~~~~~~~~-~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGAS---VTGIDISEEMLEQARKRLKNEGVS-FRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCE---EEEEES-HHHHHHHHHHTTTSTEE-EEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCE---EEEEeCCHHHHHHHHhcccccCch-heeehHHhCccccccccccccccceeec---
Confidence 79999999999999887 432 2222221 22222222 2222 3333356667778999999999999987
Q ss_pred cCCccceeeeeccccccCcEEEE
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~ii 647 (689)
.+ ...+|-||-|+|||||+++|
T Consensus 74 ~~-~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ED-PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SH-HHHHHHHHHHHEEEEEEEEE
T ss_pred cC-HHHHHHHHHHHcCcCeEEeC
Confidence 34 46789999999999999986
No 156
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.77 E-value=3.1e-05 Score=78.00 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCeEEEECCccch----hHHHhhc---------CCeEEEEcCCcccHHHHHHHHHHc--------CCCc----------
Q 044932 308 NIRVVLEIGSADLS----FVASLLA---------KEVLTLTVGLKDDLVDLAQVALER--------GFPA---------- 356 (689)
Q Consensus 308 ~~R~VLDVGCGtGs----faa~La~---------~~V~gmDIsp~D~seamlq~A~eR--------GL~~---------- 356 (689)
..-+|+-+||++|. +|..|.+ ..|+|.|+++ .+++.|++- +++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~-----~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~ 105 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP-----SALEKARAGIYPERSLRGLPPAYLRRYFTER 105 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H-----HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH-----HHHHHHHhCCCCHHHHhhhHHHHHHHhcccc
Confidence 45689999999994 4444443 1478888875 466666541 2221
Q ss_pred ---------------EEecCCCCCCCCCCCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 357 ---------------VVSPLGNRRLPFPSGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 357 ---------------i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+...+....+.+.+.||+|+|-.++|.+.. ....++.-+++.|+|||+|++....
T Consensus 106 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 106 DGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp -CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred CCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 0111222222334589999999888887653 3468999999999999999998754
No 157
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.76 E-value=1.4e-05 Score=84.44 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc--
Q 044932 309 IRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-- 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-- 386 (689)
...+||+|||.|....---...+++.|++- ..+..|...|.. .....|+..+||++.+||.++...+..||.
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~-----~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCT-----GLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhh-----hhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 467999999999643221112367777653 345555544432 344567889999999999998765544433
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 387 AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.....+|.|+.|+|||||...|..
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 245789999999999999876654
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.69 E-value=0.00038 Score=70.25 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCC-CCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNR-RLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~-~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..++. ..|+++++++.-. ....+-+...++. ..+...|.. .++....+||+|++.-
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~-~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP--- 129 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVA-QQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP--- 129 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC---
Confidence 35899999999999975432 3588999876421 1111122223443 223333322 2332345799998752
Q ss_pred ccccc-HHHHHHHHH--hccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 384 TWHAH-GGKLLLEMN--RILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 384 ~W~~d-~~~aL~EI~--RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
++... ...++.-+. .+|+|+|++++......- +..+. -.|+.+..+. .|...+.+|+++.
T Consensus 130 Py~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~-----~~~~~--~~~~~~~~k~--yG~s~~~~~~~~~ 192 (199)
T PRK10909 130 PFRKGLLEETINLLEDNGWLADEALIYVESEVENG-----LPTVP--ANWQLHREKV--AGQVAYRLYIREA 192 (199)
T ss_pred CCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCCC-----cccCC--CccEEEEEec--CCCEEEEEEEECC
Confidence 22221 223344333 358999999998765311 11111 2476654443 4666788898753
No 159
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.69 E-value=0.00022 Score=78.85 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHH----HcCCC---cEEecCCCCCC-C-C--CCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVAL----ERGFP---AVVSPLGNRRL-P-F--PSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~----eRGL~---~i~~~~dt~~L-P-F--pD~SFD 374 (689)
.++|||+|||+|.|+.+++.. .|+++|+++. +++.|. ..|+. ..+...|.... . + ..++||
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~-----al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE-----ALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 478999999999988654422 5899998874 344433 33553 23333443221 1 1 246899
Q ss_pred eEEeccccc-ccc-------ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 375 AIHCDGCSI-TWH-------AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 375 lVhcs~cli-~W~-------~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|++.--.+ .-. .....++.-..++|+|||+|++..-.
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999752110 000 01223445577999999999986543
No 160
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.68 E-value=0.00033 Score=77.47 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCC----CCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNR----RLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~----~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .++.. .+...+.. .+++.+++||+|+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~-----av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPE-----SVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHH-----HHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999988753 5899998864 4444433 35543 23333432 2345567899998
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+.--. ..-...++..+.+ |+|++.++++..+..+.. .+..+ ...+|.+.
T Consensus 368 ~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlar--d~~~l-~~~gy~~~ 416 (431)
T TIGR00479 368 LDPPR---KGCAAEVLRTIIE-LKPERIVYVSCNPATLAR--DLEFL-CKEGYGIT 416 (431)
T ss_pred ECcCC---CCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHH--HHHHH-HHCCeeEE
Confidence 64211 0012356666555 899999999876644321 13333 34467553
No 161
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.65 E-value=0.00037 Score=74.40 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=92.6
Q ss_pred CCCeEEEECCccchhHHH-hhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCC---CCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVAS-LLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGN---RRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~-La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt---~~LPFpD~SFDlV 376 (689)
..-+||||.||.|..-.- |.. ..|.-.|++|..+ +.-.+.+.++|+..+ +...|+ ..+.--+-..+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 456899999999985432 222 2467778887543 344566788998765 333332 2222113456888
Q ss_pred Eecccccccccc---HHHHHHHHHhccCCCcEEEEEcCC--Cch--------------------hHHHHHHHHHHhccee
Q 044932 377 HCDGCSITWHAH---GGKLLLEMNRILRPSGYFILSTKH--DSI--------------------EEEEALTTLTASICWN 431 (689)
Q Consensus 377 hcs~cli~W~~d---~~~aL~EI~RVLRPGG~fVIsdp~--~~l--------------------e~~~~ie~La~~l~W~ 431 (689)
+.+... ...+| ....|.-+.++|.|||++|.+..| +.+ ..+.+|.+|+...+|.
T Consensus 214 iVsGL~-ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 214 IVSGLY-ELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEecch-hhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 876533 32233 245788999999999999999743 111 1356899999999999
Q ss_pred EEEeeccccCceeEEEEEe
Q 044932 432 ILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 432 ~v~~~~~~~g~~~i~IwqK 450 (689)
++.+.-+..|...|.+.+|
T Consensus 293 K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 293 KIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred hhhheeccCCceEEEeecC
Confidence 8887777767666766654
No 162
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.62 E-value=7.1e-05 Score=81.97 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=67.5
Q ss_pred CeEEEECCccchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCCCCCCCCcceEEecccccc
Q 044932 310 RVVLEIGSADLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..++|+|||.|....+.. ..++++++.++......+.. +...++.. .+...+....||+|++||.+-+....-
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~-~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~- 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANEL-AKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC- 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHH-HHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc-
Confidence 378999999998665544 45788888887533222211 11122211 123334567899999999998764332
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.+++..++.|++|||+|||+++..+
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeHH
Confidence 25588899999999999999999864
No 163
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00037 Score=75.82 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=80.9
Q ss_pred CCCeEEEECCccchhH--HHhhcCCeEEEEcCCcccHHHHHHHHHHc----CCCcE--EecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFV--ASLLAKEVLTLTVGLKDDLVDLAQVALER----GFPAV--VSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~~~V~gmDIsp~D~seamlq~A~eR----GL~~i--~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+..|||==||||+|. +.|.+..++|.|++ ..|++-|... ++... +...|+..|||++++||.|.|-
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did-----~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDID-----ERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCceEeecchH-----HHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 3468999999999976 55777888999876 4576666543 33332 3344889999999999999873
Q ss_pred c-----cccccc---ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 380 G-----CSITWH---AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~-----cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
- ..+.-. .--..+|..+.++|++||++++..+-..+ ..+..++|+++..
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~-------~~~~~~~f~v~~~ 328 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPR-------HELEELGFKVLGR 328 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcch-------hhHhhcCceEEEE
Confidence 1 111100 11357899999999999999999883322 2356678877654
No 164
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.59 E-value=0.00017 Score=78.15 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=70.8
Q ss_pred ccchhH--HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEE
Q 044932 284 EFKGGV--LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVV 358 (689)
Q Consensus 284 ~F~~ga--~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~ 358 (689)
|..+.+ .+|-+.+.+--..+ ..++|||||||||.++..-+. +.|++++.+. +..-..+.+...++..++
T Consensus 38 ML~D~VRt~aYr~~i~~n~~lf----~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii 111 (346)
T KOG1499|consen 38 MLKDSVRTLAYRNAILQNKHLF----KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVI 111 (346)
T ss_pred HHhhhhhHHHHHHHHhcchhhc----CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceE
Confidence 344444 46666554321112 357999999999986654443 4588888764 334455566667776655
Q ss_pred ecCC--CC--CCCCCCCCcceEEec---cccccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 359 SPLG--NR--RLPFPSGVFDAIHCD---GCSITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 359 ~~~d--t~--~LPFpD~SFDlVhcs---~cli~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
.+.. .+ .|| -..+|+|++- .|++. ..-...+|.-=++-|+|||.++=+
T Consensus 112 ~vi~gkvEdi~LP--~eKVDiIvSEWMGy~Ll~-EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 112 TVIKGKVEDIELP--VEKVDIIVSEWMGYFLLY-ESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred EEeecceEEEecC--ccceeEEeehhhhHHHHH-hhhhhhhhhhhhhccCCCceEccc
Confidence 4322 22 456 5799999874 23322 112235566667999999988643
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.57 E-value=0.00024 Score=69.54 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=57.4
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCC---C--cEEecCC-CCCC--C-CCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGF---P--AVVSPLG-NRRL--P-FPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL---~--~i~~~~d-t~~L--P-FpD~SFD 374 (689)
..++||++|||+|..+..++. ..|+..|..+ . ...++...+++. . ..+..++ ...+ . +....||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~-l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--V-LELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---H-HHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--h-hHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 467999999999965544433 3688899876 2 233333333321 1 1122221 0111 1 2346899
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+|+++-|++. ......++.=+.++|+|+|.++++.+..
T Consensus 122 ~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999988764 5556788888999999999988887653
No 166
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.001 Score=69.79 Aligned_cols=111 Identities=21% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CCCc--EEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GFPA--VVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL~~--i~~~~dt~~LPFpD~SFDlV 376 (689)
.+.+|||.|.|+|.++++|+. -.|++.++-+ ..++.|++. |+.. .+...|....-++ ..||+|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~-----d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE-----DFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH-----HHHHHHHHHHHHhccccceEEEeccccccccc-cccCEE
Confidence 457999999999999999983 2488888754 455555543 4433 2223444333355 499999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~ 432 (689)
+.- .++|-.+|.-+..+|+|||.+++-.|-. +.-....+.++..||..
T Consensus 168 ~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 168 FLD------LPDPWNVLEHVSDALKPGGVVVVYSPTV--EQVEKTVEALRERGFVD 215 (256)
T ss_pred EEc------CCChHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhcCccc
Confidence 753 2367799999999999999999998852 22222333444457754
No 167
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.50 E-value=0.0014 Score=71.65 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=68.1
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC-CCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL-PFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L-PFpD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..++.. .|+++|+++... +.+.+.+...++. ..+...+...+ +-....||+|++.- +
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av-~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP---P 309 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAI-ACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP---P 309 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHH-HHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC---C
Confidence 468999999999999888754 589999987422 1222223334553 23444443322 11124699998741 1
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
...-...++..+. -++|++.++++..+..+.. .+..| .+|++..
T Consensus 310 r~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaR--Dl~~L---~gy~l~~ 353 (374)
T TIGR02085 310 RRGIGKELCDYLS-QMAPKFILYSSCNAQTMAK--DIAEL---SGYQIER 353 (374)
T ss_pred CCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHH--HHHHh---cCceEEE
Confidence 1111124444444 4799999999987765432 24444 4677643
No 168
>PLN02672 methionine S-methyltransferase
Probab=97.48 E-value=0.00076 Score=82.65 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CC-----------------CcEEecCCC
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GF-----------------PAVVSPLGN 363 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL-----------------~~i~~~~dt 363 (689)
..+|||+|||+|.++..|+. ..|+++|+++. +++.|.+. ++ ...+...|.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~-----Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl 193 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPR-----AVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL 193 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCcccccccccccccccccccEEEEECch
Confidence 35899999999998887764 25999999874 44444321 21 122333332
Q ss_pred CCCCCCC--CCcceEEecccccc-------------------------cc--------ccH----HHHHHHHHhccCCCc
Q 044932 364 RRLPFPS--GVFDAIHCDGCSIT-------------------------WH--------AHG----GKLLLEMNRILRPSG 404 (689)
Q Consensus 364 ~~LPFpD--~SFDlVhcs~cli~-------------------------W~--------~d~----~~aL~EI~RVLRPGG 404 (689)
.. ++.+ ..||+|++.-=.|. +. .++ ..++.+..++|+|||
T Consensus 194 ~~-~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG 272 (1082)
T PLN02672 194 LG-YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG 272 (1082)
T ss_pred hh-hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence 21 2332 36999998411000 00 111 357788889999999
Q ss_pred EEEEEcCCCchhHHHHHH-HHHHhcceeEE
Q 044932 405 YFILSTKHDSIEEEEALT-TLTASICWNIL 433 (689)
Q Consensus 405 ~fVIsdp~~~le~~~~ie-~La~~l~W~~v 433 (689)
++++-.-...- +.+. ++++..+|..+
T Consensus 273 ~l~lEiG~~q~---~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 273 IMIFNMGGRPG---QAVCERLFERRGFRIT 299 (1082)
T ss_pred EEEEEECccHH---HHHHHHHHHHCCCCee
Confidence 99987654322 3466 58887777653
No 169
>PRK04148 hypothetical protein; Provisional
Probab=97.46 E-value=0.00041 Score=66.49 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=54.5
Q ss_pred CCeEEEECCccch-hHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLS-FVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGs-faa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
.++|||||||+|. ++..|.+. .|+++|++| ..++.|.++++.+....+-.-.+-+ -..+|+|.+.+.-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~~~v~dDlf~p~~~~-y~~a~liysirpp--- 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGLNAFVDDLFNPNLEI-YKNAKLIYSIRPP--- 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCCeEEECcCCCCCHHH-HhcCCEEEEeCCC---
Confidence 4789999999995 88888765 599999886 4678888888776665432222222 2579999877632
Q ss_pred cccHHHHHHHHHhcc
Q 044932 386 HAHGGKLLLEMNRIL 400 (689)
Q Consensus 386 ~~d~~~aL~EI~RVL 400 (689)
.+....+.++.+-+
T Consensus 88 -~el~~~~~~la~~~ 101 (134)
T PRK04148 88 -RDLQPFILELAKKI 101 (134)
T ss_pred -HHHHHHHHHHHHHc
Confidence 23334555555543
No 170
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.42 E-value=0.0011 Score=68.19 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=84.2
Q ss_pred CeEEEECCccchhHHHhhc-CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC-CCCCCcceEEeccccccccc
Q 044932 310 RVVLEIGSADLSFVASLLA-KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP-FPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~-~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP-FpD~SFDlVhcs~cli~W~~ 387 (689)
-++|||||=.......-.. ..|+.+|+.+... ++ ....+=...|| -+++.||+|.|+.+ +.+.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~-----------~I--~qqDFm~rplp~~~~e~FdvIs~SLV-LNfVP 118 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP-----------GI--LQQDFMERPLPKNESEKFDVISLSLV-LNFVP 118 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC-----------Cc--eeeccccCCCCCCcccceeEEEEEEE-EeeCC
Confidence 5899999985543322211 2489999987421 11 11112112233 24789999999864 35555
Q ss_pred cH---HHHHHHHHhccCCCcE-----EEEEcCCCch-----hHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCC
Q 044932 388 HG---GKLLLEMNRILRPSGY-----FILSTKHDSI-----EEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 388 d~---~~aL~EI~RVLRPGG~-----fVIsdp~~~l-----e~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
++ +..|.-+++.|+|+|. |+|..|.... ...+.+..++.++||..+..+. .......+|+|...
T Consensus 119 ~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~--~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 119 DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKK--SKKLAYWLFRKSGK 195 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEe--cCeEEEEEEeecCC
Confidence 44 7899999999999999 8888776433 1345688999999999886643 34555667887543
No 171
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.0013 Score=69.96 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=60.1
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEec----CC---CCCCCCCCCCcc
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSP----LG---NRRLPFPSGVFD 374 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~----~d---t~~LPFpD~SFD 374 (689)
..+||+|||+|..+..|+. ..|+++|+++. ++..|.+. ++.+.+.+ +. ....|..++.+|
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~-----Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA-----AIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHH-----HHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 4799999999988777663 35889998763 44444432 34333221 11 133456689999
Q ss_pred eEEeccccccc------------ccc-------------HHHHHHHHHhccCCCcEEEEEcC
Q 044932 375 AIHCDGCSITW------------HAH-------------GGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 375 lVhcs~cli~W------------~~d-------------~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+++|.--.+.- .++ .-.++.=.-|.|+|||.+.+..-
T Consensus 225 llvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 225 LLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred EEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99985211110 000 11345567799999999999864
No 172
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.41 E-value=0.001 Score=69.58 Aligned_cols=113 Identities=21% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCCCCCC---CCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRRLPFP---SGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~LPFp---D~SF 373 (689)
++.+||+.|.|+|+++.+|+. . .|++.++.. ..++.|.+ .|+.. .+...|...-.|+ +..|
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~-----~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE-----DRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH-----HHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH-----HHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 457999999999999888874 2 488888754 34444443 36642 3333443333342 3689
Q ss_pred ceEEeccccccccccHHHHHHHHHhcc-CCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 374 DAIHCDGCSITWHAHGGKLLLEMNRIL-RPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 374 DlVhcs~cli~W~~d~~~aL~EI~RVL-RPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
|+|+.- .++|-.++.-+.++| ||||++++..|- ++.....-+.++..+|..+
T Consensus 115 DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 115 DAVFLD------LPDPWEAIPHAKRALKKPGGRICCFSPC--IEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEEEEE------SSSGGGGHHHHHHHE-EEEEEEEEEESS--HHHHHHHHHHHHHTTEEEE
T ss_pred cEEEEe------CCCHHHHHHHHHHHHhcCCceEEEECCC--HHHHHHHHHHHHHCCCeee
Confidence 999753 235557999999999 999999999875 3333334445666788765
No 173
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.40 E-value=0.00055 Score=73.96 Aligned_cols=88 Identities=14% Similarity=0.245 Sum_probs=48.9
Q ss_pred HHHHHHHHhhccc-----ccCCCCCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc-CCCcEEe
Q 044932 290 LHYLESIEEMVPD-----IEWGKNIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER-GFPAVVS 359 (689)
Q Consensus 290 ~~Yid~L~~~Lp~-----l~~G~~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR-GL~~i~~ 359 (689)
-.|+..|..++.. +..+ ...+|||||||+|.+...|+. ..++++|+++.....+ ...+... ++...+.
T Consensus 92 ~~Yi~~l~dll~~~~~~~~p~~-~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A-~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVIPRG-ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASA-QAIISANPGLNGAIR 169 (321)
T ss_pred HHHHHHHHHHhcccccccCCCC-CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH-HHHHHhccCCcCcEE
Confidence 4677767666531 1112 356899999999976655543 3589999987422211 1222223 3443221
Q ss_pred ---cCCCCCC----CCCCCCcceEEec
Q 044932 360 ---PLGNRRL----PFPSGVFDAIHCD 379 (689)
Q Consensus 360 ---~~dt~~L----PFpD~SFDlVhcs 379 (689)
..+...+ -.++..||+|+|.
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeC
Confidence 1111111 1346799999986
No 174
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.39 E-value=0.00037 Score=67.67 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=52.6
Q ss_pred CCCeEEEECCccchhHHHhhcCC-----eEEEEcCCcccHHHHHHHHHHcCCCcEEecCC-C-CCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE-----VLTLTVGLKDDLVDLAQVALERGFPAVVSPLG-N-RRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~-----V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d-t-~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+||++|+|+.+++.+. |+|+|+.+.... ..+... +|-........ . ..++-....||+|+|-.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeee--ecccchhhHHHhhhhhccccccCcceecccc
Confidence 46899999999999999888653 889999874211 000000 00000000000 0 11111127999999853
Q ss_pred c---cccccccH-------HHHHHHHHhccCCCcEEEEEcCC
Q 044932 381 C---SITWHAHG-------GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 381 c---li~W~~d~-------~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+ .-++..+. ..+|.-+...|+|||.|++-.-.
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 11111111 23344455789999998886543
No 175
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.32 E-value=0.00048 Score=71.97 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=45.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..|+.+ .|+++|+++ .|++.+.++. -...+...|...+++++-.+|.|++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~-----~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDR-----DLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCH-----HHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 3468999999999999888864 589999886 4566655432 12334455666777764335777654
No 176
>PLN02476 O-methyltransferase
Probab=97.32 E-value=0.00092 Score=70.98 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=62.0
Q ss_pred CCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCC-CCCC-C----CCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGN-RRLP-F----PSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt-~~LP-F----pD~SFDl 375 (689)
.++|||||+|+|..+.+++. . .|+++|.++... ....+...+.|+.. .+...++ .-|+ + .+++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 57999999999998877764 2 388999887421 22223333446642 2222332 1122 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|+.-. +-.+-..++..+.+.|+|||.+++..
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 98642 12234578889999999999999874
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.26 E-value=0.0013 Score=67.76 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCCCCcc---eEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPSGVFD---AIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD~SFD---lVhc 378 (689)
+..+|||+|||+|.++..|+.. .|+++|+++ .+++.+.++- -...+...|...+|++ +|| +|++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~-----~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvs 100 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP-----RLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVS 100 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH-----HHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEE
Confidence 4578999999999999988864 488999876 3555554431 1233445566677766 566 5554
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.22 E-value=0.0012 Score=68.51 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=46.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++..|+.. .|+++|+++ .+++.+.++- .. ..+...|...++++ .||.|+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~-----~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDP-----RLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH-----HHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 3578999999999999888865 589999876 4555555431 12 23445566777776 48999875
No 179
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.19 E-value=0.00072 Score=67.56 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCCC-Cch----hhhhcccc--chhhccc
Q 044932 527 HWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAP-DTL----PVIYDRGL--VGIYHDW 598 (689)
Q Consensus 527 ~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~-~tL----~vI~~RGL--ig~yhdw 598 (689)
.|++++-.+..-.--++. =..|+|+++|+|.++.+|.. .+- ..|+-++.. .-+ ..+-..|+ |-+++.-
T Consensus 28 ~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d 103 (187)
T PRK00107 28 LWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 899888532211111222 24699999999998887753 221 235555442 211 12223343 4445555
Q ss_pred cCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEEee--c---
Q 044932 599 CESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTY--A--- 673 (689)
Q Consensus 599 ce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~~--~--- 673 (689)
.+.+.. +.+||+|-+..+ .. +.+++-++-|+|||||.+++-+.......+..++..+.|...... .
T Consensus 104 ~~~~~~-~~~fDlV~~~~~-------~~-~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 104 AEEFGQ-EEKFDVVTSRAV-------AS-LSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred HhhCCC-CCCccEEEEccc-------cC-HHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 555655 679999988642 23 367788899999999999999988999999999999999865432 1
Q ss_pred -CCCceEEEEEec
Q 044932 674 -QDKEGILCAQKT 685 (689)
Q Consensus 674 -~~~E~iL~~~K~ 685 (689)
+++-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 223446666664
No 180
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.16 E-value=0.0034 Score=71.08 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCC--CCCCCcceEE--
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLP--FPSGVFDAIH-- 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LP--FpD~SFDlVh-- 377 (689)
...+|||++||.|+=+.+|+. . .|++.|+++.-. ..+.+.+.+-|+..+ +...|...++ ++ ..||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~-~~fD~ILvD 190 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSNVALTHFDGRVFGAALP-ETFDAILLD 190 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCchhhhhhhch-hhcCeEEEc
Confidence 457899999999985544443 2 388899887422 222333333477653 3345554442 44 6899999
Q ss_pred --ecccc---------ccccccH--------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhc
Q 044932 378 --CDGCS---------ITWHAHG--------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASI 428 (689)
Q Consensus 378 --cs~cl---------i~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l 428 (689)
|+.-- ..|.... ..+|....+.|||||+++.++=.-.. +...-++.+++..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 55211 1222111 35788889999999999998744323 2333455555553
No 181
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.16 E-value=0.0088 Score=59.94 Aligned_cols=135 Identities=22% Similarity=0.156 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhH----HHhhcCCeEEEEcCCcccHHHHHHH-HHHcCCCcE-EecCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFV----ASLLAKEVLTLTVGLKDDLVDLAQV-ALERGFPAV-VSPLGN 363 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfa----a~La~~~V~gmDIsp~D~seamlq~-A~eRGL~~i-~~~~dt 363 (689)
.+++|.|.- ++.+... ..++||||+|.|-=| ..+-+..++-+|-...- .+.++. +.+-|+..+ +.....
T Consensus 33 ~Hi~DSL~~-~~~~~~~--~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK--~~FL~~~~~~L~L~nv~v~~~R~ 107 (184)
T PF02527_consen 33 RHILDSLAL-LPFLPDF--GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKK--VAFLKEVVRELGLSNVEVINGRA 107 (184)
T ss_dssp HHHHHHHGG-GGCS-CC--CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHH--HHHHHHHHHHHT-SSEEEEES-H
T ss_pred HHHHHHHHh-hhhhccC--CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchH--HHHHHHHHHHhCCCCEEEEEeee
Confidence 366666542 3333322 227999999999533 33334568888865431 233433 344577743 333333
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+. +....+||+|++- ..- ....++.-+.+.|+|||++++.--+...++....+.....++++....
T Consensus 108 E~-~~~~~~fd~v~aR-Av~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 108 EE-PEYRESFDVVTAR-AVA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp HH-TTTTT-EEEEEEE-SSS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred cc-cccCCCccEEEee-hhc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeee
Confidence 33 4456899999874 332 344778888889999999988866555555444555666666665543
No 182
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.14 E-value=0.001 Score=67.59 Aligned_cols=98 Identities=20% Similarity=0.149 Sum_probs=61.7
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCCC-CCC-----CCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGNR-RLP-----FPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt~-~LP-----FpD~SFDl 375 (689)
.++||+|||++|.-+.+|+. ..|++++++|... ..+.+.....|+... +...++. -|+ .+.+.||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 57999999999987777763 2489999887422 222233334465432 2223321 111 12368999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+.-. +-.+-..++..+.+.|+|||.+++...
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 98642 122345788889999999999999853
No 183
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.14 E-value=0.00096 Score=70.49 Aligned_cols=129 Identities=20% Similarity=0.276 Sum_probs=76.0
Q ss_pred CCcccchhHHHHHHHHHhhcccccC-C-CCCCeEEEECCccch----hHHHhhc---------CCeEEEEcCCcccHHHH
Q 044932 281 NQSEFKGGVLHYLESIEEMVPDIEW-G-KNIRVVLEIGSADLS----FVASLLA---------KEVLTLTVGLKDDLVDL 345 (689)
Q Consensus 281 ggt~F~~ga~~Yid~L~~~Lp~l~~-G-~~~R~VLDVGCGtGs----faa~La~---------~~V~gmDIsp~D~seam 345 (689)
.-|.|+....++..+-...+|.+-. . ++.-+|+-+||+||. +|..|.+ ..|+|.||+. ..
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~-----~~ 141 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL-----SV 141 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH-----HH
Confidence 3455666666554333334443211 1 135689999999994 4444432 1377888765 34
Q ss_pred HHHHHH---------cCCCcE-------------Ee------------cCCCCCCCCCCCCcceEEeccccccccc-cHH
Q 044932 346 AQVALE---------RGFPAV-------------VS------------PLGNRRLPFPSGVFDAIHCDGCSITWHA-HGG 390 (689)
Q Consensus 346 lq~A~e---------RGL~~i-------------~~------------~~dt~~LPFpD~SFDlVhcs~cli~W~~-d~~ 390 (689)
++.|.. ++++.. +. ..+...-++..+.||+|+|-.++|-+.. ...
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~ 221 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQE 221 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHH
Confidence 554432 222211 00 1111111213478999999877776553 346
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCc
Q 044932 391 KLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 391 ~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
.++..++..|+|||+|++......
T Consensus 222 ~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 222 RILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred HHHHHHHHHhCCCCEEEEccCccc
Confidence 899999999999999999876543
No 184
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.11 E-value=0.0023 Score=65.99 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEe
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVS 359 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~ 359 (689)
...|+..|.++. +.++||+||.+.|.-+.+|+. ..++++|+++. +.+.|++ -|+...+.
T Consensus 47 ~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e-----~~~~A~~n~~~ag~~~~i~ 114 (219)
T COG4122 47 TGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEE-----RAEIARENLAEAGVDDRIE 114 (219)
T ss_pred HHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHH-----HHHHHHHHHHHcCCcceEE
Confidence 345666666542 367899999999987777663 23889998874 4444443 36554321
Q ss_pred --c-CCCC-CCC-CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 360 --P-LGNR-RLP-FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 360 --~-~dt~-~LP-FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
. .++. .|- +..++||+|+.-. +-.+-..+|....++|||||.+++..
T Consensus 115 ~~~~gdal~~l~~~~~~~fDliFIDa----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 115 LLLGGDALDVLSRLLDGSFDLVFIDA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEecCcHHHHHHhccCCCccEEEEeC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 2 2321 111 4568999998531 12233489999999999999999874
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.09 E-value=0.0015 Score=64.47 Aligned_cols=117 Identities=19% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCeEEEECCccchhHH--HhhcC--C---------eEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVA--SLLAK--E---------VLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRLPFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa--~La~~--~---------V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~LPFpD~S 372 (689)
....|||-=||+|++.. ++... . ++|.|+++.... .+.+-+...|+.. .+...|...||+++++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~-~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR-GARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH-HHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHH-HHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 35689999999999763 33332 2 569999875332 2222233345543 3446677889988899
Q ss_pred cceEEeccccccccc------c----HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 373 FDAIHCDGCSITWHA------H----GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 373 FDlVhcs~cli~W~~------d----~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
||+|+|.- +|-. + -..++.++.|+|+|...+++..... ++.++....|.....
T Consensus 107 ~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~-------~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 107 VDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRE-------LEKALGLKGWRKRKL 169 (179)
T ss_dssp SCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCC-------HHHHHTSTTSEEEEE
T ss_pred CCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-------HHHHhcchhhceEEE
Confidence 99999851 2221 1 1357899999999944444444432 345566667766543
No 186
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.09 E-value=0.00037 Score=71.48 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=81.4
Q ss_pred ecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC
Q 044932 277 TFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF 354 (689)
Q Consensus 277 ~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL 354 (689)
.|-|.|.||--.-+.+.++|.---| .|+....++||+|+|.|..+..++.. .|.+..+| ..|+......+.
T Consensus 83 G~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS-----~tMr~rL~kk~y 155 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-----WTMRDRLKKKNY 155 (288)
T ss_pred cccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-----HHHHHHHhhcCC
Confidence 4778888887666666555542223 46656689999999999998888764 35555543 457666666664
Q ss_pred CcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCC-CcEEEEE
Q 044932 355 PAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRP-SGYFILS 409 (689)
Q Consensus 355 ~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRP-GG~fVIs 409 (689)
...- ..+-. -.|=.||+|.|.. ++.=+.++.++|..|+-||+| .|.+|++
T Consensus 156 nVl~-~~ew~---~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 156 NVLT-EIEWL---QTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceee-ehhhh---hcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 3321 11111 1245699999863 334355788999999999999 8998887
No 187
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.04 E-value=0.0075 Score=63.98 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=87.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHc----C---C-CcEEe-
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALER----G---F-PAVVS- 359 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eR----G---L-~~i~~- 359 (689)
..++.|.+++|........-+||==|||.|.++-.++..+ +.|.++|-.|. -+-.+++.. + + |.+..
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFML--LASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHH--HHHHHHHcccCCCCcEEEecceecc
Confidence 4456676766631111234589999999999998887654 77777765432 122333332 0 0 00000
Q ss_pred ---------------------------------cCCCCCCCCCC---CCcceEEeccccccccccHHHHHHHHHhccCCC
Q 044932 360 ---------------------------------PLGNRRLPFPS---GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPS 403 (689)
Q Consensus 360 ---------------------------------~~dt~~LPFpD---~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPG 403 (689)
..|-..+.-++ ++||.|+..+ .|.-..+.-.+|..|.++||||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccC
Confidence 00001111122 6999987542 3443346678999999999999
Q ss_pred cEEEEEcCC-----Cc-------h-hHHHHHHHHHHhcceeEEEeec
Q 044932 404 GYFILSTKH-----DS-------I-EEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 404 G~fVIsdp~-----~~-------l-e~~~~ie~La~~l~W~~v~~~~ 437 (689)
|++|=.+|- +. + ..++++..+++.++|+.+....
T Consensus 196 G~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 GYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 988877763 21 2 2467899999999999876543
No 188
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0031 Score=63.88 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCCeEEEECCccchhH--HHhhc-CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc---c
Q 044932 308 NIRVVLEIGSADLSFV--ASLLA-KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG---C 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~-~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~---c 381 (689)
.+++|||+|||||.++ +++++ ..|+++|++|. ..+...+.+.+-+....+...|..+ .++.||.++..- .
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~-a~ei~r~N~~~l~g~v~f~~~dv~~---~~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE-ALEIARANAEELLGDVEFVVADVSD---FRGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH-HHHHHHHHHHhhCCceEEEEcchhh---cCCccceEEECCCCcc
Confidence 3578999999999864 56666 46999999884 1122222222212223344444433 247788777541 1
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
-.. +.|. .+|.-..++- -++.+....- ..+.++..+...+..++.
T Consensus 121 ~~r-haDr-~Fl~~Ale~s----~vVYsiH~a~--~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRR-HADR-PFLLKALEIS----DVVYSIHKAG--SRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccc-cCCH-HHHHHHHHhh----heEEEeeccc--cHHHHHHHHHhcCCeEEE
Confidence 111 2232 2333333332 2333332211 223466777777766653
No 189
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.01 E-value=0.00011 Score=68.14 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=65.3
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-CchhhhhccccchhhccccCCCCCCCccchhhccccccccccCC
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
.-.+|||+++|.|.|+..|...+. .|+-++.. ..+.. +-....-++-.+. ...+++||+|.+.++|....+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~d- 93 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLPD- 93 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSSH-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhccc-
Confidence 345899999999999999988766 34433332 12221 1111221211111 235789999999999998774
Q ss_pred cCCccceeeeeccccccCcEEEEeCch
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRDKV 651 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD~~ 651 (689)
...+|-+|=|+|+|||+++|.+..
T Consensus 94 ---~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 ---PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 367899999999999999999754
No 190
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.94 E-value=0.0027 Score=64.44 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=70.3
Q ss_pred CceeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc--C--CeEEEEcCCcccHHHHHHH
Q 044932 273 GEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA--K--EVLTLTVGLKDDLVDLAQV 348 (689)
Q Consensus 273 g~~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~--~--~V~gmDIsp~D~seamlq~ 348 (689)
|=.|.+.-.-.+|..+...-...|.+++. ...+|||+-||.|.|+..++. . .|+++|+.|. .-+-+.+-
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~-a~~~L~~N 144 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD-AVEYLKEN 144 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH-HHHHHHHH
Confidence 33444555567888887655555655432 357999999999999877765 2 4999999984 22344444
Q ss_pred HHHcCCCcE--EecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEE
Q 044932 349 ALERGFPAV--VSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 349 A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
+...++... ....|...++- ...||-|++.. .+ .-..+|..+.+++++||.+.
T Consensus 145 i~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHTT-TTTEEEEES-GGG----TT-EEEEEE----TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--hH---HHHHHHHHHHHHhcCCcEEE
Confidence 455565543 33456555543 68999888642 11 22357888999999999875
No 191
>PLN02823 spermine synthase
Probab=96.92 E-value=0.0098 Score=64.76 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC-C--------CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG-F--------PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG-L--------~~i~~~~dt~~-LPFpD~SF 373 (689)
..++||-||+|.|..+..++.. .|++++++| .+++.|++.- . ...+...|+.. |.-.+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~-----~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ-----EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 4689999999999988877653 378888876 4666666531 1 11222333311 22345789
Q ss_pred ceEEecccccccc------ccHHHHHH-HHHhccCCCcEEEEEcC
Q 044932 374 DAIHCDGCSITWH------AHGGKLLL-EMNRILRPSGYFILSTK 411 (689)
Q Consensus 374 DlVhcs~cli~W~------~d~~~aL~-EI~RVLRPGG~fVIsdp 411 (689)
|+|++-. .-++. -.-..++. .+.+.|+|||.|++...
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9999742 11111 01235676 78999999999988753
No 192
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.84 E-value=0.0093 Score=62.83 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCcceEEeccccccccccH---HHHHHHHHhccCCCcEEEEEcCC-------------CchhHHHHHHHHHHhcceeEEE
Q 044932 371 GVFDAIHCDGCSITWHAHG---GKLLLEMNRILRPSGYFILSTKH-------------DSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~---~~aL~EI~RVLRPGG~fVIsdp~-------------~~le~~~~ie~La~~l~W~~v~ 434 (689)
..||+|+++.|+---..+. ..+++.+.++|||||+|++..-- ......+.+++.++..++.+..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 3599999888764433343 47899999999999999998532 1112446688888999998765
Q ss_pred ee
Q 044932 435 HK 436 (689)
Q Consensus 435 ~~ 436 (689)
..
T Consensus 237 ~~ 238 (256)
T PF01234_consen 237 LE 238 (256)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.82 E-value=0.0025 Score=70.34 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=60.9
Q ss_pred CeEEEECCccchhHHHhhc-C---CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCCCCCCCcceEEecccccc
Q 044932 310 RVVLEIGSADLSFVASLLA-K---EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~-~---~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
.+|||++||+|.++..++. . .|+++|+++.-. +.+..-+...++... +...|+..+......||+|.+.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 4799999999999988753 2 489999987421 111222233455433 44444433221146799998642
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. ..+..+|....+.++|||+++++.+
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 1 2234677776788999999999953
No 194
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.76 E-value=0.0064 Score=68.53 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=55.6
Q ss_pred CCeEEEECCccchhHHHhh--------cCCeEEEEcCCcccHHHHH-HHHHHcCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLL--------AKEVLTLTVGLKDDLVDLA-QVALERGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La--------~~~V~gmDIsp~D~seaml-q~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
..+|||||||+|-+....+ ...|+++.-+|. ....+ +.+...+.. ..+...+++.+..| ..+|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~--A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN--AVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH--HHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh--HHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEE
Confidence 4689999999998653222 235889987763 11222 222445543 33444566776666 5999998
Q ss_pred ec--cccccccccHHHHHHHHHhccCCCcEEE
Q 044932 378 CD--GCSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 378 cs--~cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
+- +.+.. .+-....|.-..|.|||||.++
T Consensus 264 SElLGsfg~-nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGD-NELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBT-TTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccc-cccCHHHHHHHHhhcCCCCEEe
Confidence 63 11111 2223357888999999999876
No 195
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.022 Score=57.80 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=77.7
Q ss_pred CCeEEEECCccchhHHHhhcC---C--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccc-
Q 044932 309 IRVVLEIGSADLSFVASLLAK---E--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS- 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl- 382 (689)
...+|+||||+|-....|+.. + ..+.|++|. .....+..|+..+........|... .+..++.|+++...-.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~-A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE-ALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH-HHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcC
Confidence 567999999999877777653 2 567899885 3356667777665543222111100 1223788887653211
Q ss_pred -------------cccc--ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCce
Q 044932 383 -------------ITWH--AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEM 443 (689)
Q Consensus 383 -------------i~W~--~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~ 443 (689)
..|. .+. ..+|..+.-+|.|-|.|++..-..... .++-.+++.-+|..........+.+
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKKGYGVRIAMQRKAGGE 199 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhcccceeEEEEEecCCc
Confidence 1132 122 245667778889999999987654432 2355577788886644333333333
Q ss_pred e
Q 044932 444 G 444 (689)
Q Consensus 444 ~ 444 (689)
.
T Consensus 200 ~ 200 (209)
T KOG3191|consen 200 T 200 (209)
T ss_pred e
Confidence 3
No 196
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.67 E-value=0.0011 Score=68.83 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCC-Cchhhhhcc-------cc--ch
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-DTLPVIYDR-------GL--VG 593 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~tL~vI~~R-------GL--ig 593 (689)
..|++.+.+ + +.+..+ ..|+|.++|.|.++..|... +-+ +|+-++-. +-|...-+| +. |-
T Consensus 59 ~~~r~~~~~-~---~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 59 RIWKRMAVS-W---SGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHHHH-H---hCCCCC--CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeE
Confidence 568776542 2 233322 46999999999999888653 212 34444432 334333322 11 22
Q ss_pred hhccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 594 IYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 594 ~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.+.-.+.++.-+.+||+|.+...|.... + ...+|-||-|+|+|||.++|-|
T Consensus 131 ~~~~d~~~lp~~~~sfD~V~~~~~l~~~~---d-~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 131 WIEGDATDLPFDDCYFDAITMGYGLRNVV---D-RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEcccccCCCCCCCEeEEEEecccccCC---C-HHHHHHHHHHHcCcCcEEEEEE
Confidence 23333566765557999999888777654 3 3567999999999999998875
No 197
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.67 E-value=0.00037 Score=69.38 Aligned_cols=93 Identities=25% Similarity=0.431 Sum_probs=59.9
Q ss_pred EEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchh----hhhccccch---hhc-cccCCCCCCCccchhhccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLP----VIYDRGLVG---IYH-DWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~----vI~~RGLig---~yh-dwce~f~typrTyDLlHa~~l 617 (689)
.|+|+++|.|+++..|... .+- |+-++- ++.+. .+-..|+-+ +++ |..+ . .+|.+||+|++.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~---v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQ---LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHHH
Confidence 5999999999999888653 222 222221 22222 222345422 222 2222 1 35789999999998
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
|....+ ...+|-++.|+|+|||++++.+-
T Consensus 77 l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIKD----KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCCC----HHHHHHHHHHHcCCCCEEEEEEc
Confidence 877644 24678899999999999998763
No 198
>PLN02244 tocopherol O-methyltransferase
Probab=96.67 E-value=0.00072 Score=72.93 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=60.0
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCch----hhhhccccch---hh-ccccCCCCCCCccchhhcccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTL----PVIYDRGLVG---IY-HDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL----~vI~~RGLig---~y-hdwce~f~typrTyDLlHa~~ 616 (689)
-..|+|+++|.|+++..|... .. +|+=++- ++-+ ..+-.+|+.. .. .|. +.++.-+.+||+|.+..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 457999999999999988764 22 2222221 1111 1223334422 11 132 33444568999999987
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+..+.++ ..+|-||-|+|+|||.++|-+
T Consensus 195 ~~~h~~d~----~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPDK----RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence 77665542 347889999999999999853
No 199
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.54 E-value=0.0067 Score=63.40 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCC-CCCC-C-----CCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGN-RRLP-F-----PSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt-~~LP-F-----pD~SFD 374 (689)
.++||+||+++|.-+.+|+. ..|+++++++... ..+.+...+.|+... +...++ +.|| + ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 57899999999987666653 2489999876321 112222233465432 222222 1222 1 136999
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+|+.-. +...-..++..+.+.|+|||.+++..
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 998642 12233467777889999999998864
No 200
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.52 E-value=0.0012 Score=66.07 Aligned_cols=114 Identities=18% Similarity=0.328 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhh----hhcccc--chhh
Q 044932 525 TRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPV----IYDRGL--VGIY 595 (689)
Q Consensus 525 ~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~v----I~~RGL--ig~y 595 (689)
...|+..+-. .+.+..+ ..|+|+++|.|.++..|.+. +- .+|+=++- ++.+.. +...++ +-+.
T Consensus 30 ~~~~~~~~l~----~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~ 101 (231)
T TIGR02752 30 HKKWRKDTMK----RMNVQAG--TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101 (231)
T ss_pred hHHHHHHHHH----hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEE
Confidence 4566655432 2344433 46999999999999888653 11 01222222 122211 112232 1222
Q ss_pred ccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 596 HDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 596 hdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
+.=.+.++.-+.+||+|++...|....+. ..+|-|+-|+|+|||++++-+.
T Consensus 102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDY----MQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EechhcCCCCCCCccEEEEecccccCCCH----HHHHHHHHHHcCcCeEEEEEEC
Confidence 22223344334799999988776554332 3467889999999999998763
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=96.50 E-value=0.017 Score=61.11 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=69.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC--
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-- 366 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-- 366 (689)
-|.+.| -.+|.+.. +..++||=||-|.|..+..++.+ .|+-+||++ ..++.+++- +|.....++.-++
T Consensus 57 iYHEmL-vHppl~~h-~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~-lP~~~~~~~DpRv~l 128 (262)
T PRK00536 57 IESELL-AHMGGCTK-KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISF-FPHFHEVKNNKNFTH 128 (262)
T ss_pred hHHHHH-HHHHHhhC-CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHH-CHHHHHhhcCCCEEE
Confidence 444434 34443332 36899999999999999888876 488888875 455555542 1110000110000
Q ss_pred --CC---CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 367 --PF---PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 367 --PF---pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
-+ ..++||+|++-. + .....+..+.|+|+|||.++.......+
T Consensus 129 ~~~~~~~~~~~fDVIIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 129 AKQLLDLDIKKYDLIICLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred eehhhhccCCcCCEEEEcC-C-----CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 01 237899998642 2 2347789999999999999998765543
No 202
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.37 E-value=0.015 Score=58.00 Aligned_cols=100 Identities=15% Similarity=0.025 Sum_probs=54.5
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCC-CCCC-C-CC-CCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGN-RRLP-F-PS-GVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt-~~LP-F-pD-~SFDlVhcs 379 (689)
..+|||++||+|.++..++.+ .|+++|+++... ....+-+...++. ..+...|. ..|. + .. ..||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999888765 488899876421 1111222223443 22333333 1121 1 12 247888753
Q ss_pred cccccccc-cHHHHHHHH--HhccCCCcEEEEEcCC
Q 044932 380 GCSITWHA-HGGKLLLEM--NRILRPSGYFILSTKH 412 (689)
Q Consensus 380 ~cli~W~~-d~~~aL~EI--~RVLRPGG~fVIsdp~ 412 (689)
- ++.. ....+|.-+ ..+|+++|.+++..+.
T Consensus 129 P---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 P---PFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred c---CCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 1 1111 112333322 4579999988887554
No 203
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.34 E-value=0.0024 Score=65.05 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=67.6
Q ss_pred HHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcccc-chhhccccCCCCCC
Q 044932 528 WKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGL-VGIYHDWCESFGTY 605 (689)
Q Consensus 528 W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGL-ig~yhdwce~f~ty 605 (689)
+++.+....+..|.. .....|+|+++|.|.++..|..... .|+-++- +.-|...-.++- +...+.=.+.++..
T Consensus 26 ~q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 26 LQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCC
Confidence 344444334443432 3456799999999999988876532 2333332 233332223321 11122223556666
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.+||+|-++..|.. .. + +..+|-||-|+|+|||.+++-.
T Consensus 101 ~~~fD~V~s~~~l~~-~~--d-~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 101 TATFDLAWSNLAVQW-CG--N-LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CCcEEEEEECchhhh-cC--C-HHHHHHHHHHHcCCCeEEEEEe
Confidence 789999987766542 22 2 3568999999999999999873
No 204
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.30 E-value=0.0056 Score=59.47 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=72.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhh----hhccccchh--hccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPV----IYDRGLVGI--YHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~v----I~~RGLig~--yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
+.|+|+++|.|.++.+|..... .|+-++- +..+.. +...|+-.. .-|+.+ ..+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4599999999999988887543 3443332 222211 111222111 123333 34679999987755532
Q ss_pred cc------------------CCcCCccceeeeeccccccCcEEEEeCchhh-HHHHHHHHhhcceeEEEee
Q 044932 621 LK------------------SRCRQPVSIVVEMDRILRPGGWAIVRDKVEI-LDPLEGILRSLHWEIRMTY 672 (689)
Q Consensus 621 ~~------------------~~c~~~~~illEmDRILRP~G~~iirD~~~~-l~~v~~i~~~lrW~~~~~~ 672 (689)
.. .+.. +..+|-++.|+|+|||.+++-+...- ...+..+++...|+.++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKV-IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHH-HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 21 1122 36678899999999999988765554 6677777777778877653
No 205
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.29 E-value=0.01 Score=64.84 Aligned_cols=95 Identities=21% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH--cCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE--RGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e--RGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
.....+|+|.|.|..+..++.. .|-+++++...+ ++.|.. .|+....+++ -+.+|=. |+|++-.|+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v----~~~a~~~~~gV~~v~gdm-fq~~P~~----daI~mkWiLh 247 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFV----LAAAPYLAPGVEHVAGDM-FQDTPKG----DAIWMKWILH 247 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHH----HhhhhhhcCCcceecccc-cccCCCc----CeEEEEeecc
Confidence 3678999999999988777653 477788765322 333322 2333223222 1334433 4999999999
Q ss_pred cccc-cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 384 TWHA-HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
||.+ +-.++|+....-|+|||.+++-+.
T Consensus 248 dwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9985 557899999999999999999864
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.018 Score=63.04 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=69.1
Q ss_pred CCCeEEEECCccchhHHHhhc---C--C-eEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC--CCCC-CcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K--E-VLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP--FPSG-VFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~--~-V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP--FpD~-SFDlVh 377 (689)
.+.+|||+.++.|+=+.+|+. . . |+++|+++.-. ..+...+.+-|+.. .....|+..++ ++.. .||.|+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 457999999999974444432 2 2 58999887422 23333344447775 33445554443 2323 599998
Q ss_pred ----eccc-------cccccccH----------HHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHh
Q 044932 378 ----CDGC-------SITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTAS 427 (689)
Q Consensus 378 ----cs~c-------li~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~ 427 (689)
|+.. -+-|...+ ..+|....++|||||.++.++=.-..+ ...-+..+++.
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 4321 11132221 257788899999999999997432222 22335455544
No 207
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.20 E-value=0.015 Score=65.86 Aligned_cols=96 Identities=21% Similarity=0.295 Sum_probs=66.1
Q ss_pred eEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC---CCc-EEecCCCCCCCCCCCCcceEEeccccc
Q 044932 311 VVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG---FPA-VVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG---L~~-i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
++|-+|||--.+...|.+. .|+.+|+|+..+ ..+..++ -+. .+...+...+.|+|.|||+|+.-..+-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V-----~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVV-----AAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHH-----HHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 8999999999888777754 588899987533 2222332 222 234567788999999999998643211
Q ss_pred c---------ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 384 T---------WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 384 ~---------W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ |.......+.|+.|||+|||+++..+-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1 122234678899999999998776543
No 208
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.11 E-value=0.015 Score=62.23 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=43.1
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++..|+.. .|+++|+++. +++.+.++ +. ...+...|....+++ .||+|+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~-----li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR-----MVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHH-----HHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 3468999999999999888764 5999999864 44444432 21 123344455454544 68988764
No 209
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.016 Score=59.86 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=56.7
Q ss_pred CCeEEEECCccchhHHHhh---c-CCe--EEEEcCCcccHHHHHHHHHHc---CC------------CcEEecCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLL---A-KEV--LTLTVGLKDDLVDLAQVALER---GF------------PAVVSPLGNRRLP 367 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La---~-~~V--~gmDIsp~D~seamlq~A~eR---GL------------~~i~~~~dt~~LP 367 (689)
+...||+|.|+|.+++.+. . .+. .|++.-| +.++.+.+. -+ ...+.+.|....-
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~-----eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP-----ELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhH-----HHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 4679999999998765443 2 233 6666544 333333321 11 1122244444443
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
-+...||.|||.... . ....++...|+|||.+++-.-+
T Consensus 158 ~e~a~YDaIhvGAaa-~------~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAA-S------ELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred CccCCcceEEEccCc-c------ccHHHHHHhhccCCeEEEeecc
Confidence 456789999996322 2 5677888899999999986543
No 210
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.13 Score=53.93 Aligned_cols=118 Identities=23% Similarity=0.268 Sum_probs=77.3
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEE-ecCCCCCC---CCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVV-SPLGNRRL---PFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~-~~~dt~~L---PFpD~SFDlVhcs~ 380 (689)
..+++||+|+-||+|+..|+++ .|+++|+.-. |+.--++.....+. ...+...| -|. ...|+++|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~-----Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG-----QLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC-----ccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 4689999999999999999876 4999998653 33322332222221 11222222 133 3678998753
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCc------------h-------hHHHHHHHHHHhcceeEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS------------I-------EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~------------l-------e~~~~ie~La~~l~W~~v~~ 435 (689)
.+|. ...+|-.+..+|.|+|.++....|.+ . .-...+..++...+|....-
T Consensus 153 SFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 153 SFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3333 44899999999999999998865521 1 11246888899999988654
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.05 E-value=0.012 Score=61.94 Aligned_cols=156 Identities=11% Similarity=0.148 Sum_probs=79.5
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----------CCeEEEEcCCcccHHHHHHHHHHcCCCcE---E
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----------KEVLTLTVGLKDDLVDLAQVALERGFPAV---V 358 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----------~~V~gmDIsp~D~seamlq~A~eRGL~~i---~ 358 (689)
.++|.+++.. . ...+|||-+||+|+|..++.. ..++|+|+++....-+.+..+. +|+... +
T Consensus 35 ~~l~~~~~~~-~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i 109 (311)
T PF02384_consen 35 VDLMVKLLNP-K---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEE
T ss_pred HHHHHhhhhc-c---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccc
Confidence 3455555531 1 346899999999998765543 3588999987433222222222 232221 2
Q ss_pred ecCCCCCCC-CC-CCCcceEEec--cccccc-----------c-------ccHHHHHHHHHhccCCCcEEEEEcCCCchh
Q 044932 359 SPLGNRRLP-FP-SGVFDAIHCD--GCSITW-----------H-------AHGGKLLLEMNRILRPSGYFILSTKHDSIE 416 (689)
Q Consensus 359 ~~~dt~~LP-Fp-D~SFDlVhcs--~cli~W-----------~-------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le 416 (689)
...++...+ +. ...||+|++. +....| . .....++.-+.+.|++||++++..|...+.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~ 189 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF 189 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence 333432222 22 5789999874 111111 0 011246777999999999999988876542
Q ss_pred ---HHHHHHHHHHhcce-eEEEee-cccc----CceeEEEEEeCCC
Q 044932 417 ---EEEALTTLTASICW-NILAHK-TDEI----SEMGVKIYQKPES 453 (689)
Q Consensus 417 ---~~~~ie~La~~l~W-~~v~~~-~~~~----g~~~i~IwqKp~~ 453 (689)
....+++.+-.-++ ..+..- ...+ -...|++++|...
T Consensus 190 ~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 190 SSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp GSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred ccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 22346544433333 332221 1111 1345777887653
No 212
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.04 E-value=0.0062 Score=59.56 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=68.9
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhh----hccccchhhcccc-CCCCCCCccch
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVI----YDRGLVGIYHDWC-ESFGTYPRSYD 610 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI----~~RGLig~yhdwc-e~f~typrTyD 610 (689)
..|.+.. -.+|+|+++|.|.++.++... +- .+|+-++- +..+... -..|+-.+ .-.| ..+..++..||
T Consensus 25 ~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~i-~~~~~d~~~~~~~~~D 99 (187)
T PRK08287 25 SKLELHR--AKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGNI-DIIPGEAPIELPGKAD 99 (187)
T ss_pred HhcCCCC--CCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCe-EEEecCchhhcCcCCC
Confidence 3344443 347999999999998877542 21 12322222 1122111 11122110 0001 11234567899
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhccee
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWE 667 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~ 667 (689)
+|.+++.+. . +..++-++-|+|+|||.+++-+ ..+-..++..+++...+.
T Consensus 100 ~v~~~~~~~------~-~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 100 AIFIGGSGG------N-LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred EEEECCCcc------C-HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 998776432 3 3567778899999999999976 455677788888877774
No 213
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.0027 Score=62.77 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=40.8
Q ss_pred CCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 363 NRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+..++|.|+|.|+|.|..++-|.. .....+++|.+|+|||||++-++.|.
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 356789999999999876555533 35568999999999999999999875
No 214
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.93 E-value=0.0015 Score=68.05 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=59.2
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhcc----ccchhhccccCCCCCCCccchhhc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDR----GLVGIYHDWCESFGTYPRSYDLLH 613 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~R----GLig~yhdwce~f~typrTyDLlH 613 (689)
+.++.+ ..|+|+++|+|+++..|... .. +|+-++. ++.+...-.| ..|-+.+.=+...+.-+.+||+|+
T Consensus 48 l~l~~~--~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~ 122 (263)
T PTZ00098 48 IELNEN--SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIY 122 (263)
T ss_pred CCCCCC--CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEE
Confidence 444433 35999999999998888543 22 2332222 1222222211 112111111122233347999999
Q ss_pred cccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 614 a~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
+...|-... ..+ ...+|-++-|+|+|||+++|.|-
T Consensus 123 s~~~l~h~~-~~d-~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 123 SRDAILHLS-YAD-KKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EhhhHHhCC-HHH-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 976654432 113 24578899999999999999863
No 215
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.90 E-value=0.0017 Score=68.60 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=68.1
Q ss_pred hhhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCch----hhhhccccchhhccccCCCCCCCccc
Q 044932 535 SYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTL----PVIYDRGLVGIYHDWCESFGTYPRSY 609 (689)
Q Consensus 535 ~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL----~vI~~RGLig~yhdwce~f~typrTy 609 (689)
.+...+++++|. .|||+++|.||||-.+..+ .+=|.=|.- +++.+ .-|-++||-+.-.=-|.-+..+|-+|
T Consensus 53 ~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 53 LLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 456677888875 8999999999999999877 664432221 22333 34668887654333334444555599
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|-|=+-++|-+.... . ....+-.+.|+|+|||.+++.
T Consensus 129 D~IvSi~~~Ehvg~~-~-~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRK-N-YPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCGG-G-HHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcChh-H-HHHHHHHHHHhcCCCcEEEEE
Confidence 999999998876432 2 245688999999999999987
No 216
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.90 E-value=0.072 Score=56.21 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=59.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH--cCCCcEEe----
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE--RGFPAVVS---- 359 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e--RGL~~i~~---- 359 (689)
.-+..|...+|.+ ..++|||+|||+|....+..+ ..++.+|.++ .|++++.. +..+....
T Consensus 20 ~vl~El~~r~p~f----~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~-----~~~~l~~~l~~~~~~~~~~~~~ 90 (274)
T PF09243_consen 20 RVLSELRKRLPDF----RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP-----EMLELAKRLLRAGPNNRNAEWR 90 (274)
T ss_pred HHHHHHHHhCcCC----CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH-----HHHHHHHHHHhcccccccchhh
Confidence 3345555555543 367999999999974433332 2466677654 45555433 22221111
Q ss_pred -cCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 360 -PLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 360 -~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
..-...+++. ..|+|++++.+.+.. .....++..+.+.+.+ +++|.++..
T Consensus 91 ~~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 91 RVLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred hhhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 1111223444 339999987664422 2234555566565655 888887754
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.87 E-value=0.067 Score=55.82 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCeEEEECCccchhH--HHhh--cC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEe--cCCC-CCCC-----CCCCCcce
Q 044932 309 IRVVLEIGSADLSFV--ASLL--AK-EVLTLTVGLKDDLVDLAQVALERGFPAVVS--PLGN-RRLP-----FPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfa--a~La--~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~--~~dt-~~LP-----FpD~SFDl 375 (689)
.+++||||.=||.-+ .+|+ +. .|+++|+++... +-..++....|+.-.+. ...+ +.|+ ...++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 578999998888533 3332 33 499999987422 22234444445432211 1111 1111 45789999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++.- +|-.+-..++.+.-|+||+||.+++.-
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 9753 344444578899999999999999864
No 218
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.087 Score=56.29 Aligned_cols=114 Identities=19% Similarity=0.208 Sum_probs=70.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC-CCc--------E
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG-FPA--------V 357 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG-L~~--------i 357 (689)
.|.. +..++|.+..+ ..++||=||-|.|+.+..++.. .++.++|+| +.++.|++.- ... .
T Consensus 61 ~yhE-ml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-----~Vi~~ar~~l~~~~~~~~dpRv~ 133 (282)
T COG0421 61 IYHE-MLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-----AVIELARKYLPEPSGGADDPRVE 133 (282)
T ss_pred HHHH-HHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-----HHHHHHHHhccCcccccCCCceE
Confidence 3433 33445544444 4589999999999999888865 478888876 5677776641 111 1
Q ss_pred EecCCCCC-CC-CCCCCcceEEeccccccccc----cHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 358 VSPLGNRR-LP-FPSGVFDAIHCDGCSITWHA----HGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 358 ~~~~dt~~-LP-FpD~SFDlVhcs~cli~W~~----d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+...|... +. ++ .+||+|++-. .-+-.+ .-..++..++|.|+++|.++......
T Consensus 134 i~i~Dg~~~v~~~~-~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 134 IIIDDGVEFLRDCE-EKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred EEeccHHHHHHhCC-CcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 11112111 11 33 4899998631 111000 11578999999999999999985443
No 219
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.83 E-value=0.03 Score=61.04 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=61.0
Q ss_pred eEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCC-CC-------C---C---
Q 044932 311 VVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRR-LP-------F---P--- 369 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~-LP-------F---p--- 369 (689)
+|||++||+|.|+..|+.. .|+++|+++. +++.|.+ .++.. .+...+... ++ + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~-----av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKP-----SVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 5999999999999988753 5999998864 4444443 45532 233333222 11 1 0
Q ss_pred --CCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 370 --SGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 370 --D~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
...||+|+.- +.-+ ...++.-+ ++|++.++++..+..+.. .+..|.+. |++.
T Consensus 275 ~~~~~~d~v~lDPPR~G~-----~~~~l~~l---~~~~~ivYvsC~p~tlaR--Dl~~L~~~--Y~l~ 330 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL-----DPDTCKLV---QAYERILYISCNPETLKA--NLEQLSET--HRVE 330 (353)
T ss_pred cccCCCCEEEECCCCCCC-----cHHHHHHH---HcCCcEEEEEcCHHHHHH--HHHHHhcC--cEEE
Confidence 1237988753 1111 12344444 448999999988754432 25555433 6654
No 220
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.81 E-value=0.22 Score=55.25 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=72.4
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhh----hccc-----cchhhccccCCCCCC-Cccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVI----YDRG-----LVGIYHDWCESFGTY-PRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI----~~RG-----Lig~yhdwce~f~ty-prTyDLlHa~ 615 (689)
..|+|+++|+|-.+.+|... |-. .|+=++.. ..+... -.-| -+-++ +...++.. +.+||+|=++
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 47999999999999888653 211 12222211 111000 0001 12222 23334444 3489999887
Q ss_pred cccccccC-CcCCccceeeeeccccccCcEEEEe--CchhhHHHHHHHHhhcceeEEEeecCCCceEEEEEe
Q 044932 616 HLFSRLKS-RCRQPVSIVVEMDRILRPGGWAIVR--DKVEILDPLEGILRSLHWEIRMTYAQDKEGILCAQK 684 (689)
Q Consensus 616 ~lfs~~~~-~c~~~~~illEmDRILRP~G~~iir--D~~~~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K 684 (689)
--|..... .-.+...++-+.-|+|+|||.+||- -..++..+++++.. ++++.....+=.||-|+|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence 66643211 1122245677889999999998886 34456666666443 445554444567887777
No 221
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.79 E-value=0.051 Score=59.69 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC-CCCCCCCcceEEecccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR-LPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~-LPFpD~SFDlVhcs~cli~ 384 (689)
.+.++||+||++|+|+..|+.++ |+++|..+- .......+ .......+.-+ .|- .+.||+|+|-.+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l------~~~L~~~~-~V~h~~~d~fr~~p~-~~~vDwvVcDmv--- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM------AQSLMDTG-QVEHLRADGFKFRPP-RKNVDWLVCDMV--- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc------CHhhhCCC-CEEEEeccCcccCCC-CCCCCEEEEecc---
Confidence 46799999999999999999876 888886542 12222221 12222222222 222 578999998643
Q ss_pred ccccHHHHHHHHHhccCCC--cEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPS--GYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPG--G~fVIsdp 411 (689)
..|..++.-|.+-|..| ..+|+.-.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 24566777777777665 45666543
No 222
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.77 E-value=0.031 Score=61.14 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=62.5
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCC-CC-C--------------CC
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRR-LP-F--------------PS 370 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~-LP-F--------------pD 370 (689)
.+|||++||+|.|+..|+.. .|+++|+++... +.+.+-+...++.. .+...+... ++ + ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai-~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSV-AAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988753 599999887422 12222233345542 233333222 11 1 02
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
..||+|+.-- +-..-...++.-+. +|++.++++..+..+. ..+..+.+ +|.+.
T Consensus 287 ~~~D~v~lDP---PR~G~~~~~l~~l~---~~~~ivyvSC~p~tla--rDl~~L~~--gY~l~ 339 (362)
T PRK05031 287 YNFSTIFVDP---PRAGLDDETLKLVQ---AYERILYISCNPETLC--ENLETLSQ--THKVE 339 (362)
T ss_pred CCCCEEEECC---CCCCCcHHHHHHHH---ccCCEEEEEeCHHHHH--HHHHHHcC--CcEEE
Confidence 2589998631 10001123444443 4799999998774432 22555543 67664
No 223
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.73 E-value=0.0022 Score=63.76 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=59.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchh----hhhccccc---hhhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLP----VIYDRGLV---GIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~----vI~~RGLi---g~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
-.|+|+++|.|.++..|.++. + +|+-++.. .-+. .+..+|+- ..-.|+.+ + .++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 469999999999999998764 2 34444432 2221 12334442 22234433 2 2478899999988875
Q ss_pred cccCCcCCccceeeeeccccccCcEEEE
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
... .-. +..++-+|-|.|+|||++++
T Consensus 107 ~~~-~~~-~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE-AKT-IPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC-HHH-HHHHHHHHHHHcCCCcEEEE
Confidence 432 223 25678999999999999654
No 224
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.73 E-value=0.0049 Score=63.28 Aligned_cols=103 Identities=17% Similarity=0.303 Sum_probs=64.5
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccccchhhccccCCCCCCCccchhhc
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLH 613 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f~typrTyDLlH 613 (689)
++..+....+ ..|+|+++|.|.++.+|... |-. .|+=++- +..+...-.+++ -+.+.--+.+. .+.+||+|+
T Consensus 21 ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~--~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~ 94 (255)
T PRK14103 21 LLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGA--VIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVV 94 (255)
T ss_pred HHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEE
Confidence 3444444333 67999999999999998764 111 2333332 344444444542 12221123332 346899999
Q ss_pred cccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 614 a~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+..+|-...+ ...+|-++-|+|+|||+++|-
T Consensus 95 ~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 95 SNAALQWVPE----HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EehhhhhCCC----HHHHHHHHHHhCCCCcEEEEE
Confidence 9998876543 245788999999999999985
No 225
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.68 E-value=0.0022 Score=66.08 Aligned_cols=114 Identities=23% Similarity=0.314 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----ccc--hhhccc
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GLV--GIYHDW 598 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GLi--g~yhdw 598 (689)
+.|++.+.+ .. ....+. .|+|+.+|+|-++..|...-----.|+-++-. +-|.+.-.| |+. =..+.=
T Consensus 33 ~~wr~~~~~-~~---~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~d 106 (233)
T PF01209_consen 33 RRWRRKLIK-LL---GLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGD 106 (233)
T ss_dssp ----SHHHH-HH---T--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-B
T ss_pred HHHHHHHHh-cc---CCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcC
Confidence 689987764 22 222232 79999999999988886531111134444432 444433332 332 222233
Q ss_pred cCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 599 CESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 599 ce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.|.+|.-..|||.|=....|-... + ..-.|-||=|||||||.++|=|
T Consensus 107 a~~lp~~d~sfD~v~~~fglrn~~---d-~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 107 AEDLPFPDNSFDAVTCSFGLRNFP---D-RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TTB--S-TT-EEEEEEES-GGG-S---S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcCCCCceeEEEHHhhHHhhC---C-HHHHHHHHHHHcCCCeEEEEee
Confidence 677887789999998776665543 4 3567899999999999988765
No 226
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.66 E-value=0.029 Score=62.50 Aligned_cols=103 Identities=19% Similarity=0.119 Sum_probs=66.1
Q ss_pred CCeEEEECCccchhHHHhh--cC-CeEEEEcCCcccHHHHHHHHHHc----CCCc---EEecCCC-CCCCC---CCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLL--AK-EVLTLTVGLKDDLVDLAQVALER----GFPA---VVSPLGN-RRLPF---PSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La--~~-~V~gmDIsp~D~seamlq~A~eR----GL~~---i~~~~dt-~~LPF---pD~SFD 374 (689)
+++|||+=|=||+|+.+.+ +. .|+.||+|. ..++.|.+. |+.. .+...|. .-|.. ....||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~-----~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK-----RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccH-----HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 5799999999999886554 44 699999875 455665553 5532 2223332 11111 234999
Q ss_pred eEEec-----cc-ccccc--ccHHHHHHHHHhccCCCcEEEEEcCCCchh
Q 044932 375 AIHCD-----GC-SITWH--AHGGKLLLEMNRILRPSGYFILSTKHDSIE 416 (689)
Q Consensus 375 lVhcs-----~c-li~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~~~le 416 (689)
+|+.- +. ...|. .+...++....++|+|||.++++.-...+.
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 99862 10 00121 244578889999999999999998665443
No 227
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.50 E-value=0.0062 Score=60.91 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=72.6
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhh----hhcccc--chhhc-cccCCCC--CCCccchhhccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPV----IYDRGL--VGIYH-DWCESFG--TYPRSYDLLHAD 615 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~v----I~~RGL--ig~yh-dwce~f~--typrTyDLlHa~ 615 (689)
-.+|+|+++|.|.++..|... +- .+|+-++- +..+.. +...|+ |-+.+ |+.+.|+ .-+.+||+|-..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 467999999999999888653 21 12333332 112211 111232 11122 2213344 236789998764
Q ss_pred cccc-----cccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeEEEe
Q 044932 616 HLFS-----RLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 616 ~lfs-----~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
.... ....+.. ...+|-++-|+|+|||.++|. +...++..+...+..-.|.+++.
T Consensus 119 ~~~p~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 119 FPDPWPKKRHHKRRLV-QPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred CCCCCCCccccccccC-CHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 3221 1112223 256789999999999999886 67778888888887777877744
No 228
>PRK08317 hypothetical protein; Provisional
Probab=95.49 E-value=0.0052 Score=60.39 Aligned_cols=96 Identities=27% Similarity=0.334 Sum_probs=58.7
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCC-CCchhhhhcc--ccchhh----ccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA-PDTLPVIYDR--GLVGIY----HDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~-~~tL~vI~~R--GLig~y----hdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|+++|.|.++..|...- -- -+|+-++. ++.+...-.+ +.-... .|.. .++.-+.+||+||+..+|.
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhh
Confidence 479999999999998886531 00 02332222 2333333333 110111 1221 2233357999999999988
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
...+. ..++-++-|+|+|||++++-+
T Consensus 99 ~~~~~----~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 99 HLEDP----ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ccCCH----HHHHHHHHHHhcCCcEEEEEe
Confidence 77653 446889999999999998754
No 229
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.49 E-value=0.013 Score=57.44 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=66.2
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccchhhccccCCC-------CCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESF-------GTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f-------~typrTyDLlHa~ 615 (689)
.+|+|+++|.|+++.++... .|+..=.-|. +. ..|+--+..|..+.. .+-+.++|+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~-----~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM-----KP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc-----cc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999998766432 2443222221 10 012222223444321 0224578887654
Q ss_pred cccc---c-----ccCCcCCccceeeeeccccccCcEEEEe-Cc----hhhHHHHHHHHhhcceeEEEe-e----cCCCc
Q 044932 616 HLFS---R-----LKSRCRQPVSIVVEMDRILRPGGWAIVR-DK----VEILDPLEGILRSLHWEIRMT-Y----AQDKE 677 (689)
Q Consensus 616 ~lfs---~-----~~~~c~~~~~illEmDRILRP~G~~iir-D~----~~~l~~v~~i~~~lrW~~~~~-~----~~~~E 677 (689)
+... . ....+. +..+|-++-|+|+|||.+++- .. .+++..++. . -|.+.+. + ..+.|
T Consensus 106 ~~~~~~g~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~-~~~~~~~~~~~~~~~~~~ 180 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDL-VELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---L-FEKVKVTKPQASRKRSAE 180 (188)
T ss_pred CCCCCCCCccccHHHHHHH-HHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---h-hceEEEeCCCCCCcccce
Confidence 3211 1 111122 256788999999999999983 22 234444443 2 2555554 2 13468
Q ss_pred eEEEEE
Q 044932 678 GILCAQ 683 (689)
Q Consensus 678 ~iL~~~ 683 (689)
.+|||.
T Consensus 181 ~~~~~~ 186 (188)
T TIGR00438 181 VYIVAK 186 (188)
T ss_pred EEEEEe
Confidence 999985
No 230
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.48 E-value=0.037 Score=63.02 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHH-HHhccCCCcEEEEEcCCCch
Q 044932 392 LLLE-MNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 392 aL~E-I~RVLRPGG~fVIsdp~~~l 415 (689)
++.| ..+.|+|||++.+..|...+
T Consensus 177 ~f~~~~~~lL~~~G~~~~I~P~s~l 201 (524)
T TIGR02987 177 VFEEISLEIANKNGYVSIISPASWL 201 (524)
T ss_pred HHHHHHHHhcCCCCEEEEEEChHHh
Confidence 3445 58999999999999887654
No 231
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.37 E-value=0.047 Score=54.53 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHH-HHHcCCCc--EEecCCC----CCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQV-ALERGFPA--VVSPLGN----RRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~-A~eRGL~~--i~~~~dt----~~LPFpD~SFDlVhc 378 (689)
..+|||+=||+|.+|...+.++ |+.++.++.- ...++. +..-++.. .+...|. .++......||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a--~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKA--IKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHH--HHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHH--HHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4689999999999998777654 8888887631 122222 22224443 2222332 112124689999987
Q ss_pred ccccccccccH--HHHHHHHH--hccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEE
Q 044932 379 DGCSITWHAHG--GKLLLEMN--RILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQ 449 (689)
Q Consensus 379 s~cli~W~~d~--~~aL~EI~--RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~Iwq 449 (689)
-- |+.... ..+|.-+. .+|+++|.+++-.....-. . ...-+|..+.++. -|...+.+||
T Consensus 121 DP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~-----~--~~~~~~~~~~~r~--yG~t~~~~~~ 183 (183)
T PF03602_consen 121 DP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKEDL-----P--ESPGNWELIKERK--YGDTKLSFYQ 183 (183)
T ss_dssp -----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSSS--------SEETTEEEEEEEE--ETTEEEEEEE
T ss_pred CC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCCC-----c--cCCCCEEEEEEec--CCCEEEEEEC
Confidence 42 233222 45666665 8999999999987543110 0 1123577665543 2555677765
No 232
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.23 E-value=0.023 Score=58.61 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=63.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhh----hhccccchhhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPV----IYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~v----I~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|+++|.|..+.++.....- .|+-++- +.-+.. +-..|+-...+ +..-..+||+|.++-+...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~-- 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP-- 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH--
Confidence 57999999999888777654321 1222221 111211 11223210001 1001117999987643321
Q ss_pred CCcCCccceeeeeccccccCcEEEEeCchh-hHHHHHHHHhhcceeEEEe
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRDKVE-ILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD~~~-~l~~v~~i~~~lrW~~~~~ 671 (689)
+..++-++-|+|+|||++|+.+-.. -...+...+....+.....
T Consensus 192 -----~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 -----LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 2345678999999999999986433 4566777777777776544
No 233
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.21 E-value=0.0076 Score=59.67 Aligned_cols=132 Identities=18% Similarity=0.213 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCCC-Cchh----hhhcccc--chhhcc
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAP-DTLP----VIYDRGL--VGIYHD 597 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~-~tL~----vI~~RGL--ig~yhd 597 (689)
..|++++-......-.+. =.+|+|+++|.|.++..|.. .+- ..|+-++.. +.+. .+...|+ |-+.+.
T Consensus 25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 477777754321100122 25799999999987665542 111 123333322 2221 1222343 222221
Q ss_pred ccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhh-cceeEEEe
Q 044932 598 WCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRS-LHWEIRMT 671 (689)
Q Consensus 598 wce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~-lrW~~~~~ 671 (689)
=.+.+ ..+.+||+|-+.+ + .. +.+++-.+.|+|+|||.+++........++..+... -.|.....
T Consensus 100 d~~~~-~~~~~fD~I~s~~-~------~~-~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAEDF-QHEEQFDVITSRA-L------AS-LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chhhc-cccCCccEEEehh-h------hC-HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 12223 2467999998765 2 23 256677789999999999999888888888888744 34666544
No 234
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.14 E-value=0.0055 Score=62.98 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=60.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hccccch---hhc-cccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGLVG---IYH-DWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGLig---~yh-dwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++..|..... +|+-++. +..|... -..|+.. +.+ |..+--+..+.+||+|.+.++|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999987642 3444443 2333222 2234422 111 1111112356899999999998
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
....+. ..+|-++-|+|+|||.++|-
T Consensus 123 ~~~~~~----~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVADP----KSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhCCH----HHHHHHHHHHcCCCeEEEEE
Confidence 765433 45788999999999999874
No 235
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.14 E-value=0.0066 Score=60.35 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=58.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hccccc--hhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGLV--GIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGLi--g~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|+|+++|+|.++..|..+. + .|+-++.. +.+..+ -..|+- ..-.|. ..++ ++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g-~--~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG-Y--DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC-C--eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhcc-ccCCCCEEEEeccccc
Confidence 479999999999998887754 3 45555542 333221 223431 111122 1222 4678999999888864
Q ss_pred ccCCcCCccceeeeeccccccCcEEEE
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
.. .-. +..++-++.|.|+|||+++|
T Consensus 107 ~~-~~~-~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-AGR-VPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-HHH-HHHHHHHHHHHhCCCcEEEE
Confidence 32 223 35788999999999998544
No 236
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.13 Score=57.97 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=67.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCC---CCCCcceEEec--
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPF---PSGVFDAIHCD-- 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPF---pD~SFDlVhcs-- 379 (689)
+..+|||+=||.|.|+..|+.+ .|+|+++++..+ +++.+-|...|+.. .+...+++++.- ....||.|+.-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV-~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAV-EAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHH-HHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 3568999999999999999964 699999998543 34445555667664 344455444432 33588999863
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
|.-.. ..++..+.+ ++|-..++||..|..+
T Consensus 372 R~G~~-----~~~lk~l~~-~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 372 RAGAD-----REVLKQLAK-LKPKRIVYVSCNPATL 401 (432)
T ss_pred CCCCC-----HHHHHHHHh-cCCCcEEEEeCCHHHH
Confidence 22211 245555555 4788899999877544
No 237
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=95.05 E-value=0.0086 Score=64.49 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCCC-Cchh---hhhc-ccc---chhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHAP-DTLP---VIYD-RGL---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~~-~tL~---vI~~-RGL---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
+.|+|+++|.|.|+.+|.... -. |+=++.. ..+- .+.. .+. |-+.+.=-+.++. +.+||+|++.+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~---V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKL---VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCE---EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 579999999999999887643 22 2223311 1110 0000 000 1111111234555 8999999999987
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
-+.. + ...+|-++-|+|+|||.++|.
T Consensus 200 ~H~~---d-p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHRR---S-PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hccC---C-HHHHHHHHHHhcCCCcEEEEE
Confidence 6533 4 356899999999999999986
No 238
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.04 E-value=0.066 Score=53.78 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=64.0
Q ss_pred cccCCCCCCeEEEECCccchhHHHhhcCC-----eEEEEcCCcccHHHHHHHHHHc--CCCcEEecCCCCCC-----CCC
Q 044932 302 DIEWGKNIRVVLEIGSADLSFVASLLAKE-----VLTLTVGLKDDLVDLAQVALER--GFPAVVSPLGNRRL-----PFP 369 (689)
Q Consensus 302 ~l~~G~~~R~VLDVGCGtGsfaa~La~~~-----V~gmDIsp~D~seamlq~A~eR--GL~~i~~~~dt~~L-----PFp 369 (689)
.+.+. .+..||++|.|||-++.+++.++ ++++..++. ......++ +.. +...++..| -+.
T Consensus 43 ~I~pe-sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d-----F~~~L~~~~p~~~--ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 43 VIDPE-SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD-----FVCHLNQLYPGVN--IINGDAFDLRTTLGEHK 114 (194)
T ss_pred ccCcc-cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH-----HHHHHHHhCCCcc--ccccchhhHHHHHhhcC
Confidence 34443 56789999999999999988764 677777663 22222222 221 112222222 267
Q ss_pred CCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 370 SGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.-||.|+|..-+..+.. -.-.+|..+.--|++||-|+-..-
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 889999998632222111 224678888999999999987653
No 239
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.04 E-value=0.57 Score=48.47 Aligned_cols=121 Identities=14% Similarity=0.032 Sum_probs=68.6
Q ss_pred CCeEEEECCccchhHHH----hhcCCeEEEEcCCcccHHHHHHHHH-HcCCCc-EEecCCCCCCCCCCCC-cceEEeccc
Q 044932 309 IRVVLEIGSADLSFVAS----LLAKEVLTLTVGLKDDLVDLAQVAL-ERGFPA-VVSPLGNRRLPFPSGV-FDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~----La~~~V~gmDIsp~D~seamlq~A~-eRGL~~-i~~~~dt~~LPFpD~S-FDlVhcs~c 381 (689)
..+++|||.|.|-=|.- ..+.+|+-+|-... --+.++.+. +-|++. .+...-++.+.- +.. ||+|+|-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRA- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRA- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeeh-
Confidence 47899999999964432 23445777775443 124454443 457773 333333333321 122 99998642
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeec
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
+- ....++.=....||+||++++.--....+...+.+......++.......
T Consensus 144 va----~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 144 VA----SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred cc----chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 21 22244444567899999886544333334445567777777777665443
No 240
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.03 E-value=0.16 Score=55.75 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCeEEEECCccchhH--HHhhc-CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecC--CCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFV--ASLLA-KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPL--GNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~-~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~--dt~~LPFpD~SFDlVhc 378 (689)
..+.|||+|||.|.+. ++.++ +.|.++..+ .|.+.|+.. .+...+.++ -.+.+-+| ...|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS------~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS------EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh------HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 4689999999999754 33333 468888754 466666543 233223322 23566677 78999986
Q ss_pred ccc-cccccccHHHHHHHHHhccCCCcEEEEEcCC----CchhHHHHHHHHHHhccee
Q 044932 379 DGC-SITWHAHGGKLLLEMNRILRPSGYFILSTKH----DSIEEEEALTTLTASICWN 431 (689)
Q Consensus 379 s~c-li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~----~~le~~~~ie~La~~l~W~ 431 (689)
--. .+-..+.......-.+|-|+|.|..+=.... ++-.++-.++...++.-|-
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 421 1111222233444567999999987643211 1222333455556666664
No 241
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=95.00 E-value=0.017 Score=62.44 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=57.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCC-chhh-hhcc------ccchhhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPD-TLPV-IYDR------GLVGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~-tL~v-I~~R------GLig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
+.|+|.++|.|.|+.+|.....- .|+-++... -+.. -+-| +.+.+..-=-+.++. +.+||+|-+.++|-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 68999999999998888765421 234333221 1100 0011 111111111123333 34899999999886
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEe
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+.. + +.++|-||-|+|||||.++|.
T Consensus 200 H~~---d-p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HRK---S-PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ccC---C-HHHHHHHHHHhcCCCCEEEEE
Confidence 643 4 367899999999999999985
No 242
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.00 E-value=0.1 Score=56.63 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHH----hhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCcE
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVAS----LLAK----EVLTLTVGLKDDLVDLAQVALER----GFPAV 357 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~----La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~i 357 (689)
+.+...|.+.++ ...+++|+|||.|.=+.. |... ..+++|||. ++++.+.++ .++.+
T Consensus 64 ~~~~~~Ia~~i~------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~-----~~L~~a~~~L~~~~~p~l 132 (319)
T TIGR03439 64 KKHSSDIAASIP------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR-----SELQRTLAELPLGNFSHV 132 (319)
T ss_pred HHHHHHHHHhcC------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH-----HHHHHHHHhhhhccCCCe
Confidence 345555555544 235799999999974433 3222 367788775 455554432 23321
Q ss_pred -E----ecCC-C-CCCCC--CCCCcceEEecccccc-cc-ccHHHHHHHHHh-ccCCCcEEEEEc
Q 044932 358 -V----SPLG-N-RRLPF--PSGVFDAIHCDGCSIT-WH-AHGGKLLLEMNR-ILRPSGYFILST 410 (689)
Q Consensus 358 -~----~~~d-t-~~LPF--pD~SFDlVhcs~cli~-W~-~d~~~aL~EI~R-VLRPGG~fVIsd 410 (689)
+ +.+. . ..||= ......+++..+..+. +. .....+|..+++ .|+|||.|+|..
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 1111 1 11321 1235677776543333 11 233578899999 999999999974
No 243
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.98 E-value=0.0095 Score=65.68 Aligned_cols=101 Identities=19% Similarity=0.311 Sum_probs=62.6
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhcc--ccchhhccccCCCCCCCccchhhccc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDR--GLVGIYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~R--GLig~yhdwce~f~typrTyDLlHa~ 615 (689)
++++++ ..|+|+++|.|++|..|... ++ .|+-++- +.-+...-+| |+ ++ +=.+..+...+.+||+|.+.
T Consensus 163 l~l~~g--~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 163 LQLKPG--MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred hCCCCC--CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEe
Confidence 455544 36999999999999888753 43 2333332 2333333332 22 11 10112222336789999999
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++|..... -. ...++-++.|+|+|||.++|.+
T Consensus 236 ~~~ehvg~-~~-~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 236 GMFEHVGP-KN-YRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CchhhCCh-HH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 88876532 22 2467889999999999999863
No 244
>PRK13699 putative methylase; Provisional
Probab=94.97 E-value=0.064 Score=55.22 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCCCCcceEEecc--cc-cc------c-----cccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 368 FPSGVFDAIHCDG--CS-IT------W-----HAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 368 FpD~SFDlVhcs~--cl-i~------W-----~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+||+|+|+|+..- .. .. + .+-....+.|+.|||||||.+++........ .+..+++..+|...
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~---~~~~al~~~GF~l~ 92 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD---RFMAAWKNAGFSVV 92 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH---HHHHHHHHCCCEEe
Confidence 6788888887641 10 00 0 0002478899999999999998765433222 24455677788764
Q ss_pred EeeccccCceeEEEEEeCC
Q 044932 434 AHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 434 ~~~~~~~g~~~i~IwqKp~ 452 (689)
. ..||.|+.
T Consensus 93 ~----------~IiW~K~~ 101 (227)
T PRK13699 93 G----------HLVFTKNY 101 (227)
T ss_pred e----------EEEEECCC
Confidence 3 36899864
No 245
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.90 E-value=0.067 Score=54.84 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCeEEEECCccchh--HHHhhcC-CeEEEEcCCcccHHHHHHH-HHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSF--VASLLAK-EVLTLTVGLKDDLVDLAQV-ALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsf--aa~La~~-~V~gmDIsp~D~seamlq~-A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..++|||+|.|.|.. ++++++. .|+..|+.|.- ...+.. |...|+...+... .+-+.+..||+|+.+...+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~--~~ai~lNa~angv~i~~~~~---d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL--EQAIRLNAAANGVSILFTHA---DLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHH--HHHhhcchhhccceeEEeec---cccCCCcceeEEEeeceec
Confidence 357999999999964 4445443 48888988741 122222 3334544333322 2224779999999875544
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
. +.....++.=..|+...|-.+++.+|+.
T Consensus 154 ~-~~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 154 N-HTEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred C-chHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 4 2233456664445555555666667653
No 246
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.87 E-value=0.012 Score=58.19 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=58.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcccc--chhhccccCCCCCCCccchhhccccccccccCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGL--VGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGL--ig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
..|||.++|.|.|...|..... -..|+-++. +.-+.....+.- +-.++.=.+.++..+.+||+|.+.++|....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence 5699999999999998875420 000122221 111111111100 0111111234455678999999998886543
Q ss_pred cCCccceeeeeccccccCcEEEEeC
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD 649 (689)
+ ...+|-++-|+|+|||++++..
T Consensus 113 -~-~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 -D-LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -C-HHHHHHHHHHHcCCCcEEEEEe
Confidence 3 3568999999999999999864
No 247
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.82 E-value=0.089 Score=54.77 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-----C----CCc
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-----G----FPA 356 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-----G----L~~ 356 (689)
..|.+.|.. +|.+.. ...++||=||-|.|+.+..++.. .|++++++| ..++.|++- . -..
T Consensus 60 ~~y~e~l~h-~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-----~Vv~~a~~~f~~~~~~~~d~r~ 132 (246)
T PF01564_consen 60 FIYHEMLVH-PPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-----EVVELARKYFPEFSEGLDDPRV 132 (246)
T ss_dssp HHHHHHHHH-HHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-----HHHHHHHHHTHHHHTTGGSTTE
T ss_pred HHHHHHHhh-hHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-----HHHHHHHHhchhhccccCCCce
Confidence 466665543 232221 25789999999999999888864 488888876 345555432 1 112
Q ss_pred EEecCCCCC-CC-CCCCCcceEEeccccccccc----cHHHHHHHHHhccCCCcEEEEEcCCCchh--HHHHHHHHHHhc
Q 044932 357 VVSPLGNRR-LP-FPSGVFDAIHCDGCSITWHA----HGGKLLLEMNRILRPSGYFILSTKHDSIE--EEEALTTLTASI 428 (689)
Q Consensus 357 i~~~~dt~~-LP-FpD~SFDlVhcs~cli~W~~----d~~~aL~EI~RVLRPGG~fVIsdp~~~le--~~~~ie~La~~l 428 (689)
.+...|+.. |- ...+.||+|+.-... +... --..++..+.|+|+|||.+++........ ....+...++..
T Consensus 133 ~i~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 133 RIIIGDGRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEESTHHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred EEEEhhhHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 233333211 00 122289999863211 1111 12478999999999999999986433222 223344445554
Q ss_pred ceeE
Q 044932 429 CWNI 432 (689)
Q Consensus 429 ~W~~ 432 (689)
.-.+
T Consensus 212 F~~v 215 (246)
T PF01564_consen 212 FPQV 215 (246)
T ss_dssp SSEE
T ss_pred CCce
Confidence 4433
No 248
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.74 E-value=0.028 Score=55.81 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=76.8
Q ss_pred hhhh--hhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hccccc
Q 044932 520 KLSS--DTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGLV 592 (689)
Q Consensus 520 ~f~~--D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGLi 592 (689)
.|.. +--.|+..|..--+..+.+..+ -.|+||++|.|.|+.++...-----+|+-++. +.-+..+ -.-|+.
T Consensus 14 ~~~~~~~~~~t~~~~r~~~l~~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~ 91 (198)
T PRK00377 14 EFERDEEIPMTKEEIRALALSKLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL 91 (198)
T ss_pred HHccCCCCCCCHHHHHHHHHHHcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 4543 3347777776422333444433 36999999999997765321000012333332 1122211 111221
Q ss_pred h---h-hccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhccee
Q 044932 593 G---I-YHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWE 667 (689)
Q Consensus 593 g---~-yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~ 667 (689)
. + -.|..+.++.++-.||+|...+ .... +..+|-++-|+|+|||.+++. -..+.+.++...++.+.++
T Consensus 92 ~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~-~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 92 NNIVLIKGEAPEILFTINEKFDRIFIGG------GSEK-LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred CCeEEEEechhhhHhhcCCCCCEEEECC------Cccc-HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 1 1 1233333334445688876543 1123 356788899999999999983 2455677777777766666
Q ss_pred EEEe
Q 044932 668 IRMT 671 (689)
Q Consensus 668 ~~~~ 671 (689)
..+.
T Consensus 165 ~~~~ 168 (198)
T PRK00377 165 LEIT 168 (198)
T ss_pred eEEE
Confidence 5544
No 249
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=94.67 E-value=0.013 Score=59.93 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=59.4
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcccc--chhhccccCCCCCCCccchh
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDRGL--VGIYHDWCESFGTYPRSYDL 611 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~RGL--ig~yhdwce~f~typrTyDL 611 (689)
++..+.+. .-.+|+|+++|.|.|+..|... +- -+|+=++-. .-+...-.+ + +.++..=.+.+ ..+.+||+
T Consensus 23 ll~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~~~~-~~~~~fD~ 96 (258)
T PRK01683 23 LLARVPLE--NPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSR-LPDCQFVEADIASW-QPPQALDL 96 (258)
T ss_pred HHhhCCCc--CCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHh-CCCCeEEECchhcc-CCCCCccE
Confidence 34444443 3468999999999999888653 11 112222221 111111111 1 11111111122 13569999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+++..|....+ ...+|-+|-|+|+|||.+++.
T Consensus 97 v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLPD----HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 999998865443 245789999999999999985
No 250
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.67 E-value=0.0075 Score=53.07 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=56.4
Q ss_pred EEeecCCcchhHHHHhcc--CCceEEEeccCCC-CCchhhhh----ccccchhh----ccccCCCCCCCccchhhcccc-
Q 044932 549 NVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHA-PDTLPVIY----DRGLVGIY----HDWCESFGTYPRSYDLLHADH- 616 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~--~~vWVMNvvp~~~-~~tL~vI~----~RGLig~y----hdwce~f~typrTyDLlHa~~- 616 (689)
.|+|+++|.|.++.+|.. ...= |+-++- |..+...- ..++-.-. .|+ ......+..||+|.+.+
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSG
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCC
Confidence 589999999999999987 3322 333332 22222211 12222222 233 22245555699999999
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+..+.+... ...+|=.+-+.|+|||+++|.+
T Consensus 80 ~~~~~~~~~~-~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDE-RRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhH-HHHHHHHHHHhcCCCcEEEEEE
Confidence 2222222222 2445777889999999999974
No 251
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.54 E-value=0.011 Score=62.09 Aligned_cols=92 Identities=21% Similarity=0.316 Sum_probs=59.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchh----hhhccccchhhccccCCCC--CCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLP----VIYDRGLVGIYHDWCESFG--TYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~----vI~~RGLig~yhdwce~f~--typrTyDLlHa~~lfs~~ 621 (689)
+|+|+++|.|.+|..|..... .|+-++.. ..+. .+...|+ .+ +-.+..+. ..+..||+|-+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~v-~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-NI-RTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-ce-EEEEechhcccccCCccEEEEcchhhhC
Confidence 699999999999998877652 34444432 2222 2233455 21 11121121 137899999999888654
Q ss_pred cCCcCCccceeeeeccccccCcEEEE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
. .-. +..++-+|-|+|+|||++++
T Consensus 198 ~-~~~-~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 198 N-RER-IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred C-HHH-HHHHHHHHHHhcCCCcEEEE
Confidence 3 334 36789999999999999554
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.029 Score=56.09 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=75.6
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEec-------CCCCCCCCCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSP-------LGNRRLPFPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~-------~dt~~LPFpD~SFDlV 376 (689)
++.||++|.|.-+++..|... .|+..|-.. .+...++.+.-++....+.. .-+.++-...++||+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 478999999987777666542 466665432 33344454444431111110 0111222345799999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+|+.|+.. .+....++.-|.+.|||.|..+++.|..-..- +.+...+...+|.+...
T Consensus 108 laADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL-~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 108 LAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPRRGQSL-QKFLDEVGTVGFTVCLE 164 (201)
T ss_pred EeccchhH-HHHHHHHHHHHHHHhCcccceeEecCcccchH-HHHHHHHHhceeEEEec
Confidence 99999753 55667888999999999999999988632211 12445566667766544
No 253
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.51 E-value=0.023 Score=60.04 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=62.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----ccccchhhccccC-CCCCCCccchhhccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGLVGIYHDWCE-SFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGLig~yhdwce-~f~typrTyDLlHa~~lfs~~ 621 (689)
..|||+++|.|.++.++...+.. .|+-++-. ..+.... ..|+-......+. .....+..||+|.++.+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 57999999999988777654321 23333321 2221111 1122112222222 22234568999999765432
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeCch-hhHHHHHHHHhhcceeE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRDKV-EILDPLEGILRSLHWEI 668 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD~~-~~l~~v~~i~~~lrW~~ 668 (689)
+..++-++-|+|+|||++++..-. +-...|...+++. |+.
T Consensus 238 ------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 238 ------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred ------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 245677899999999999997532 2334445544444 654
No 254
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.47 E-value=0.21 Score=59.45 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=69.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hccccch-----hhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGLVG-----IYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGLig-----~yhdwce~f~typrTyDLlHa~~l 617 (689)
+.|+|+.+|+|+|+.++.....- .|+-++.. ..|... ..-|+-+ +-.|..+-+..+.++||||=.+-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57999999999999888765432 14444432 222211 1112210 112332222234678999866521
Q ss_pred cccccCC-------cCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEEe
Q 044932 618 FSRLKSR-------CRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 618 fs~~~~~-------c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
+-.-... ......++-..=|+|+|||.+++--...-+......+..-.+.+++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 1100000 00013455556789999999999876666666677777778888776
No 255
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.40 E-value=0.013 Score=57.50 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=57.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccc-----cchhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRG-----LVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RG-----Lig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
.+|+|+++|.|.++.++... +. --+++-++. +..+..+-.+. +--+..|..+ ++.-+.+||+|+..+.+..
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCC
Confidence 57999999999999888643 11 001222222 12223332222 1111222222 3333568999998777654
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.. . +..+|-++-++|+|||++++-+
T Consensus 119 ~~---~-~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 VT---D-IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cc---c-HHHHHHHHHHHcCCCcEEEEEE
Confidence 33 3 2567889999999999999864
No 256
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.22 Score=51.20 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCeEEEECCccchhHHHhhc---C--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCC---C-CCC--CCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG---N-RRL--PFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d---t-~~L--PFpD~SFDlV 376 (689)
...+|+|+||-.|+|+..++. . .|+++|+.|.+..+ |+..+...+- + ..| -+....+|+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------GVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------CceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 357899999999999876654 2 28999998854422 2222222111 0 000 1344457999
Q ss_pred Eecc---cccccccc------HHH-HHHHHHhccCCCcEEEEEcCC
Q 044932 377 HCDG---CSITWHAH------GGK-LLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 377 hcs~---cli~W~~d------~~~-aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|-. ..-+|.-| ... ++.=..++|+|||.|++..-.
T Consensus 116 ~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 116 LSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred EecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 8631 11122222 122 333345699999999998643
No 257
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.20 E-value=0.11 Score=57.42 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=61.1
Q ss_pred CeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC-CCCCCCcceEEecccc
Q 044932 310 RVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL-PFPSGVFDAIHCDGCS 382 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L-PFpD~SFDlVhcs~cl 382 (689)
-+|||+-||+|.++.+++.. .|+++|++|.-. +.+.+-+...++. ..+...|+..+ ......||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 37999999999999887753 389999988421 2222223333443 22333343222 11235799997532
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+ ..+..+|..+.+.+++||+++++.
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 1 234578999999999999999984
No 258
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.11 E-value=0.027 Score=58.86 Aligned_cols=112 Identities=23% Similarity=0.270 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCC--ceEEEeccCCC-CCchhhhhccc----cchh--h
Q 044932 525 TRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQK--IWVMNVVPVHA-PDTLPVIYDRG----LVGI--Y 595 (689)
Q Consensus 525 ~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~--vWVMNvvp~~~-~~tL~vI~~RG----Lig~--y 595 (689)
...|++.+-. .+++.+| -+|||..+|+|=+|.++.+.- -+ |+=++- ++-|.+--+|- +.++ -
T Consensus 36 ~~~Wr~~~i~----~~~~~~g--~~vLDva~GTGd~a~~~~k~~g~g~---v~~~D~s~~ML~~a~~k~~~~~~~~i~fv 106 (238)
T COG2226 36 HRLWRRALIS----LLGIKPG--DKVLDVACGTGDMALLLAKSVGTGE---VVGLDISESMLEVAREKLKKKGVQNVEFV 106 (238)
T ss_pred hHHHHHHHHH----hhCCCCC--CEEEEecCCccHHHHHHHHhcCCce---EEEEECCHHHHHHHHHHhhccCccceEEE
Confidence 3689988753 1222222 359999999999999997642 23 333332 24454444332 2221 2
Q ss_pred ccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 596 HDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 596 hdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+-==|.+|+-++|+|++=.+..|-... + +.-.|=||-|||+|||.+++=+
T Consensus 107 ~~dAe~LPf~D~sFD~vt~~fglrnv~---d-~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 107 VGDAENLPFPDNSFDAVTISFGLRNVT---D-IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred EechhhCCCCCCccCEEEeeehhhcCC---C-HHHHHHHHHHhhcCCeEEEEEE
Confidence 444578999999999998887776654 4 3668999999999999877765
No 259
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=94.09 E-value=0.014 Score=58.75 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=59.9
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----cccchhh--ccccCCCCCCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGLVGIY--HDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGLig~y--hdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.|||+++|.|.|+..|.... .+|+=++.. +.+...-. -|+...+ .++.+-....+-+||+|.+.++|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 49999999999998887654 244444432 22221111 1321222 22332222244689999999888866
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeC
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+. ..+|-.+.|+|+|||.+++..
T Consensus 128 ~~~----~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 128 PDP----ASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred CCH----HHHHHHHHHHcCCCcEEEEEe
Confidence 543 456889999999999999874
No 260
>PRK05785 hypothetical protein; Provisional
Probab=94.04 E-value=0.029 Score=57.28 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-CchhhhhccccchhhccccCCCC
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESFG 603 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f~ 603 (689)
..|++.+-+.+...+. . -..|||..+|+|-++..|... +. +|+-++-. +-|.+--.++ ...+.-.+.++
T Consensus 35 ~~wr~~~~~~l~~~~~-~---~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKYCG-R---PKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHhcC-C---CCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 5688876542322111 1 247999999999999888765 22 45555543 3333322232 22345567777
Q ss_pred CCCccchhhccccccccccCCcCCccceeeeeccccccCc
Q 044932 604 TYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGG 643 (689)
Q Consensus 604 typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G 643 (689)
.-+.+||+|-+...+-... + ++..|-||-|+|||.+
T Consensus 106 ~~d~sfD~v~~~~~l~~~~---d-~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASD---N-IEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhccC---C-HHHHHHHHHHHhcCce
Confidence 7789999999987765433 4 3568999999999953
No 261
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.02 E-value=0.011 Score=59.89 Aligned_cols=101 Identities=21% Similarity=0.329 Sum_probs=65.4
Q ss_pred CCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCCCCchhhhhccccchhhccccCCCCCCCccchhhcccccccc
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
.++..++.|+|.++|.|.|++++.. .|=. .++-.+-|..+..+.... .+-.-=..-|.++|. ||++...++|..
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~--rv~~~~gd~f~~~P~-~D~~~l~~vLh~ 170 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEAD--RVEFVPGDFFDPLPV-ADVYLLRHVLHD 170 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTT--TEEEEES-TTTCCSS-ESEEEEESSGGG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhcccccc--ccccccccHHhhhcc-ccceeeehhhhh
Confidence 5677899999999999999999964 2311 122223333333222210 111111223577888 999999999999
Q ss_pred ccCC-cCCccceeeeeccccccC--cEEEEeCc
Q 044932 621 LKSR-CRQPVSIVVEMDRILRPG--GWAIVRDK 650 (689)
Q Consensus 621 ~~~~-c~~~~~illEmDRILRP~--G~~iirD~ 650 (689)
|.+. |. .||--+=+.|+|| |.|+|-|.
T Consensus 171 ~~d~~~~---~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 171 WSDEDCV---KILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-HHHHH---HHHHHHHHHSEECTTEEEEEEEE
T ss_pred cchHHHH---HHHHHHHHHhCCCCCCeEEEEee
Confidence 9864 54 4888899999999 99998864
No 262
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.92 E-value=0.76 Score=50.29 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=58.2
Q ss_pred eEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCC----------------CCCCC
Q 044932 311 VVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRL----------------PFPSG 371 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~L----------------PFpD~ 371 (689)
.|||+-||+|.|+..|+.. .|+|+++++..+ ..+..-|...++... +..+++..+ .....
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av-~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 277 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAV-EDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSF 277 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHH-HHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCT
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHH-HHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhc
Confidence 7999999999999999875 599999876422 233334445566543 222222111 12234
Q ss_pred CcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 372 VFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 372 SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.||+|+.- |..+. ..++.-+. ++.=.++||.-|..+.. .+..|.+ +|++.
T Consensus 278 ~~d~vilDPPR~G~~-----~~~~~~~~---~~~~ivYvSCnP~tlaR--Dl~~L~~--~y~~~ 329 (352)
T PF05958_consen 278 KFDAVILDPPRAGLD-----EKVIELIK---KLKRIVYVSCNPATLAR--DLKILKE--GYKLE 329 (352)
T ss_dssp TESEEEE---TT-SC-----HHHHHHHH---HSSEEEEEES-HHHHHH--HHHHHHC--CEEEE
T ss_pred CCCEEEEcCCCCCch-----HHHHHHHh---cCCeEEEEECCHHHHHH--HHHHHhh--cCEEE
Confidence 67888652 22211 13333333 34568888877654422 2555544 67764
No 263
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.90 E-value=0.043 Score=55.23 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=68.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchh----hhhcccc--chhhccccCCCCCC-Cccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLP----VIYDRGL--VGIYHDWCESFGTY-PRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~----vI~~RGL--ig~yhdwce~f~ty-prTyDLlHa~~lf 618 (689)
..|+|+++|.|.|+.+|... +-+ +|+-++. +..+. .+-..|+ +-+++ +..+..+ +..||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCC
Confidence 36999999999999998764 211 2333332 12221 1122333 11222 2222333 4689999886544
Q ss_pred cccc------CCcC----------------CccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhccee
Q 044932 619 SRLK------SRCR----------------QPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWE 667 (689)
Q Consensus 619 s~~~------~~c~----------------~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~ 667 (689)
.... ..+. ....++-++-|+|+|||.+++.-...-...++.++....|.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFA 235 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCC
Confidence 3211 0000 00235667889999999999987666677888888776674
No 264
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.1 Score=51.58 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCCeEEEECCccchhH--HHhhc-CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFV--ASLLA-KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~-~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+..++|+|||.|-+. ..+.+ ..|+|+||+|. +++++... -+...+...+...+-+.-+.||.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpe-----ALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPE-----ALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHH-----HHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 3578999999999754 33333 35999999873 44444332 333333444445555666889988754
No 265
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.79 E-value=0.12 Score=53.08 Aligned_cols=133 Identities=20% Similarity=0.341 Sum_probs=73.4
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcc---ccc---h-hhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDR---GLV---G-IYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~R---GLi---g-~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|... +-+ +|+-++.. ..+...-.+ ++. - +-.|+-+.+. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 36999999999999988753 212 23333321 222211111 111 1 1124433332 4789999775333
Q ss_pred ccccC----------------------CcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhccee-EEEe-ecC
Q 044932 619 SRLKS----------------------RCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWE-IRMT-YAQ 674 (689)
Q Consensus 619 s~~~~----------------------~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~-~~~~-~~~ 674 (689)
..... .......++-++-++|+|||++++--...--..++.++....+. +.+. |-.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLA 265 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCC
Confidence 21110 00111334556669999999999964444445677777655553 3332 555
Q ss_pred CCceEEEEEe
Q 044932 675 DKEGILCAQK 684 (689)
Q Consensus 675 ~~E~iL~~~K 684 (689)
+.+++++++|
T Consensus 266 ~~~r~~~~~~ 275 (275)
T PRK09328 266 GRDRVVLGRR 275 (275)
T ss_pred CCceEEEEEC
Confidence 6788988864
No 266
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.79 E-value=0.16 Score=48.13 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----C---CeEEEEcCCc
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----K---EVLTLTVGLK 339 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~---~V~gmDIsp~ 339 (689)
+..+...|..++..........+|+|+|||-|.++..|+. . .|+++|..+.
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES 64 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence 3444455555433211112567999999999998877765 2 5889998774
No 267
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.75 E-value=0.17 Score=51.66 Aligned_cols=101 Identities=18% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCCeEEEECCccchhH--HHhh-cCC-eEEEEcCCccc--HHHHHHHHHH----cCCC---cEEecCCCCCCCCCC---C
Q 044932 308 NIRVVLEIGSADLSFV--ASLL-AKE-VLTLTVGLKDD--LVDLAQVALE----RGFP---AVVSPLGNRRLPFPS---G 371 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La-~~~-V~gmDIsp~D~--seamlq~A~e----RGL~---~i~~~~dt~~LPFpD---~ 371 (689)
+..+.+|+|||.|... ++|. ... ++|+.+.+.-. +..+++...+ .|.. ..+...|....++.. .
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 4579999999999742 3333 333 89999887421 1122222221 1321 112222211111100 2
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.-|+|+|.... |.++.-..|.++..-||||-++| +..
T Consensus 122 ~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 122 DADVVFVNNTC--FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp C-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred CCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 35888876322 34456678889999999887765 543
No 268
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=93.74 E-value=0.016 Score=62.77 Aligned_cols=95 Identities=13% Similarity=0.172 Sum_probs=64.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc---chhhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL---VGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL---ig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|.++|.|.|+.+|..... +|+-++.. .-+.+.-.+ ++ |-..+.=.+.++..+.+||+|=+.++|.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3699999999999998876532 34444443 333333222 12 1122222355565668999999999888
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+..+. ..+|-+|=|+|+|||.++|..
T Consensus 210 Hv~d~----~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVANP----AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence 77643 457889999999999999874
No 269
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=93.73 E-value=0.037 Score=57.62 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=58.3
Q ss_pred eeEEeecCCcchhHHHHhccC--Cc-eEEEeccCCC-CCchhhhhccc-cchhhccccCCCCCCCccchhhccccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ--KI-WVMNVVPVHA-PDTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~--~v-WVMNvvp~~~-~~tL~vI~~RG-Lig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
-.+|+|+++|.|.+++.|... .. . .+|+-++- ++.+.....|. -+...+---+.+++-+.+||+|.+. |+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~-~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~--~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITT-MQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI--YA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccC-CeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe--cC--
Confidence 356999999999999988643 11 1 13444443 24444333332 1111111113345446789999753 32
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeCch-hhHHHHHHH
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRDKV-EILDPLEGI 660 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD~~-~~l~~v~~i 660 (689)
. ..+-|+-|+|+|||++|+.... ..+..++.+
T Consensus 161 ----~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ----P---CKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ----C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 1 1356899999999999987432 244444444
No 270
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=93.72 E-value=0.018 Score=57.23 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=56.9
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----ccc--c----hhhccccCCCCCCCccchhhccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGL--V----GIYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGL--i----g~yhdwce~f~typrTyDLlHa~ 615 (689)
--+|+|+++|.|.|+..|..... .|+=++.. ..+...-. -|+ + +-..+|. ...|.+||+|.+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA---EKGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---cCCCCCccEEEeh
Confidence 34799999999999888865431 12222221 11111111 122 1 2222222 1236799999999
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++|....+ ...+|-++-++|+|+|.+++.+
T Consensus 120 ~~l~~~~~----~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 120 EVLEHVPD----PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hHHHhCCC----HHHHHHHHHHhcCCCcEEEEEe
Confidence 88876543 2457889999999999999875
No 271
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=93.72 E-value=0.0098 Score=60.62 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=65.8
Q ss_pred CCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCC---CCch----hhhhccccchhhccccCCCCCCCccchh
Q 044932 541 GIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA---PDTL----PVIYDRGLVGIYHDWCESFGTYPRSYDL 611 (689)
Q Consensus 541 ~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~---~~tL----~vI~~RGLig~yhdwce~f~typrTyDL 611 (689)
.+...+|+++++.+++.|-|.+.|..+ .+.++-++|..- ...| .|-+.++-| .+. .-+.+|||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv------p~~--~P~~~FDL 109 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV------PEF--WPEGRFDL 109 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T------TT-----SS-EEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC------CCC--CCCCCeeE
Confidence 467789999999999999999999764 577777766431 0000 122333322 221 24789999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
||.+-+|--+.+.-. +..++-.|...|+|||.+|+-.
T Consensus 110 IV~SEVlYYL~~~~~-L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 110 IVLSEVLYYLDDAED-LRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEEES-GGGSSSHHH-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEehHhHcCCCHHH-HHHHHHHHHHHhCCCCEEEEEE
Confidence 999999987766555 3667788889999999999974
No 272
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.67 E-value=0.76 Score=50.61 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=84.1
Q ss_pred CcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--C-eEEEEcCCcccHHHHHHHHHHcCCCcE-
Q 044932 282 QSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--E-VLTLTVGLKDDLVDLAQVALERGFPAV- 357 (689)
Q Consensus 282 gt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~-V~gmDIsp~D~seamlq~A~eRGL~~i- 357 (689)
-.||..+...=-..+.++.. .+.+||||=||.|.|+.-++.. . |+++|++|. .-.-+.+-++-.++...
T Consensus 168 Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~-A~~~L~eNi~LN~v~~~v 240 (341)
T COG2520 168 KVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPD-AVEYLKENIRLNKVEGRV 240 (341)
T ss_pred HeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHH-HHHHHHHHHHhcCcccee
Confidence 35565555422334444432 3579999999999998776643 3 999999994 22233333444455543
Q ss_pred -EecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchh----HHHHHHHHHHhcce
Q 044932 358 -VSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIE----EEEALTTLTASICW 430 (689)
Q Consensus 358 -~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le----~~~~ie~La~~l~W 430 (689)
...+|+...+..-+.||-|+...- . .-..++-...+.|++||.+.+-.....-. ....+...+.+++.
T Consensus 241 ~~i~gD~rev~~~~~~aDrIim~~p--~---~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 241 EPILGDAREVAPELGVADRIIMGLP--K---SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred eEEeccHHHhhhccccCCEEEeCCC--C---cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 224555555554489999986531 1 22368888889999999988765432211 23457777777655
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.63 E-value=0.24 Score=55.30 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=16.5
Q ss_pred CCCCCcceEEecccccccccc
Q 044932 368 FPSGVFDAIHCDGCSITWHAH 388 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d 388 (689)
||++|.+++|++.+ +||...
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~ 177 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQ 177 (386)
T ss_pred cCCCceEEEEeecc-ceeccc
Confidence 89999999998855 589753
No 274
>PTZ00146 fibrillarin; Provisional
Probab=93.57 E-value=0.024 Score=60.85 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=58.1
Q ss_pred ccCCCCCCeeEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhcc-ccchhhccccCCC--CCCCccch
Q 044932 539 GLGIDWSKIRNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDR-GLVGIYHDWCESF--GTYPRSYD 610 (689)
Q Consensus 539 ~l~~~~~~iRNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~R-GLig~yhdwce~f--~typrTyD 610 (689)
.|.+.++. .|||+.|+.|+|+..|.+. .|+-+-+-|....+.|.+.-.| +++.+..|-+.+. ...+-++|
T Consensus 127 ~l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 127 NIPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eeccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCC
Confidence 34566664 6999999999988877653 2544332221111233333332 5666666765431 11123567
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+|=++-. ..+.. .-+++++.|+|+|+|.++|-
T Consensus 205 vV~~Dva---~pdq~---~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 205 VIFADVA---QPDQA---RIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEEeCC---CcchH---HHHHHHHHHhccCCCEEEEE
Confidence 7633321 11111 23567999999999999984
No 275
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.41 E-value=0.27 Score=52.69 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCCc---EEecCCCCC-CC-C-CCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFPA---VVSPLGNRR-LP-F-PSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~~---i~~~~dt~~-LP-F-pD~SFDl 375 (689)
.++|||+=|=||+|+.+.+.. .|+.+|.|. .+++.|.+ .|+.. .+...|.-. |. + ..+.||+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~-----~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK-----RALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-H-----HHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH-----HHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 579999999999998765433 488888764 45555544 35431 222233210 10 0 2468999
Q ss_pred EEec-----cccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 376 IHCD-----GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 376 Vhcs-----~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
|++- .....-..+-..++.-..++|+|||+++++.-..
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9973 1110101234567888899999999998776443
No 276
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=93.31 E-value=0.022 Score=49.64 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=43.2
Q ss_pred eecCCcchhHHHHhccCCceEEEeccCCC-CCchh----hhhccccc---hhhccccCCCCCCC-ccchhhccccccccc
Q 044932 551 MDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLP----VIYDRGLV---GIYHDWCESFGTYP-RSYDLLHADHLFSRL 621 (689)
Q Consensus 551 mDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~----vI~~RGLi---g~yhdwce~f~typ-rTyDLlHa~~lfs~~ 621 (689)
||.++|.|.++..|.+.- --..++=++- ++-|. -+.+.+.. =+..+--+.+...+ .+||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 699999999999997652 1222332222 22221 11111210 01112223334444 599999999999988
Q ss_pred cCCcCCccceeeeeccccccCcEE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWA 645 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~ 645 (689)
. + +..+|-.+-++|+|||.+
T Consensus 80 ~---~-~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---D-IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-----HHHHHHHHTTT-TSS-EE
T ss_pred h---h-HHHHHHHHHHHcCCCCCC
Confidence 2 3 356788999999999985
No 277
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=93.31 E-value=0.037 Score=60.49 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=58.8
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccc---cchhhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRG---LVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RG---Lig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|+++|.|.++.+|... +- -+|+=++. ++.|...-++. =|-+.+.-.+.++.-+.+||+|-+.+.|..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 46999999999988777542 11 12332332 22333222221 01223322344555568999998888776655
Q ss_pred CCcCCccceeeeeccccccCcEEEEeC
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+. ..+|-|+-|+|+|||.++|-+
T Consensus 193 d~----~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 193 DP----QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CH----HHHHHHHHHhcCCCcEEEEEE
Confidence 43 347889999999999987753
No 278
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.18 E-value=0.35 Score=50.49 Aligned_cols=96 Identities=23% Similarity=0.296 Sum_probs=63.6
Q ss_pred CCCeEEEECCccchhHHHhh---c-C-CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCC-----CCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLL---A-K-EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLP-----FPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~-~-~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LP-----FpD~SFDlV 376 (689)
++.+||-+|+.+|.....+. + . .|+++.++|... ...+..|.+| ++..++..+ +.| +- ..+|+|
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~NIiPIl~DA---r~P~~Y~~lv-~~VDvI 147 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRPNIIPILEDA---RHPEKYRMLV-EMVDVI 147 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHSTTEEEEES-T---TSGGGGTTTS---EEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCCceeeeeccC---CChHHhhccc-ccccEE
Confidence 35789999999998665554 3 3 389999999633 5778888888 333344422 333 33 489999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++- ... ......++..+...||+||+|+|+..
T Consensus 148 ~~D-VaQ--p~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 148 FQD-VAQ--PDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEE--SS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eec-CCC--hHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 864 221 22345677788899999999999854
No 279
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=93.10 E-value=0.067 Score=54.14 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=65.1
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccchhhccccC---------CCCCCCccchhhc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCE---------SFGTYPRSYDLLH 613 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce---------~f~typrTyDLlH 613 (689)
..|||.+||.|+|+..|.+. .|-.+-.-|. +.+ .|+.-+-.|... .|. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 36999999999997666442 1222222221 111 121111112221 121 45788888
Q ss_pred cccccccccCCc-C------CccceeeeeccccccCcEEEEe-----CchhhHHHHHHHHhhcceeEEEee-cCCCceEE
Q 044932 614 ADHLFSRLKSRC-R------QPVSIVVEMDRILRPGGWAIVR-----DKVEILDPLEGILRSLHWEIRMTY-AQDKEGIL 680 (689)
Q Consensus 614 a~~lfs~~~~~c-~------~~~~illEmDRILRP~G~~iir-----D~~~~l~~v~~i~~~lrW~~~~~~-~~~~E~iL 680 (689)
++.......... + +.+.+|-++=|+|+|||.++|- +-.+++..+++.....+.---... ....|.++
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~ 202 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYI 202 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEE
Confidence 765332211110 0 0145788999999999999994 234455555444333333100000 13468899
Q ss_pred EEEe
Q 044932 681 CAQK 684 (689)
Q Consensus 681 ~~~K 684 (689)
+|..
T Consensus 203 ~~~~ 206 (209)
T PRK11188 203 VATG 206 (209)
T ss_pred Eeec
Confidence 9863
No 280
>PRK14968 putative methyltransferase; Provisional
Probab=93.04 E-value=0.12 Score=49.56 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=70.6
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh---------hccccchhhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI---------YDRGLVGIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI---------~~RGLig~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|.... -+|+-++- ++.+... -.||+.-+-+|+.+.|. +.+||+|=++.-
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~d~vi~n~p 99 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--GDKFDVILFNPP 99 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--ccCceEEEECCC
Confidence 469999999999999987663 23444433 2333222 12223334566666553 347999855544
Q ss_pred ccccc------------------CCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEE
Q 044932 618 FSRLK------------------SRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 618 fs~~~------------------~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~ 670 (689)
|.... .... +..++-++.|+|+|+|.+++=- ...-...+...+....|.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREV-IDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHH-HHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 32210 0111 2457889999999999876642 223456677788877887644
No 281
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=92.85 E-value=0.035 Score=57.39 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 602 FGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 602 f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++..+.+||+|+++.+|....+ ...+|-|+=|+|||||.++|-|
T Consensus 140 l~~~~~~fD~Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 140 LPVADNSVDVIISNCVINLSPD----KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCCCCCceeEEEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 4444579999999888765432 2457889999999999999964
No 282
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.78 E-value=0.041 Score=55.12 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=51.1
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccc---hhhc-cccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLV---GIYH-DWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLi---g~yh-dwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.+++.|... .|.-+-+.|.-..-.-.-+...|+- -+++ |-.+.++. ..+||+|.+++.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 36999999999999877542 2333333322110000122233432 2222 44443332 3689999988765
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
... .=++-|+|+|||.+++-
T Consensus 153 ~~~----------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI----------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred chh----------hHHHHHhcCcCcEEEEE
Confidence 322 12455899999999884
No 283
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=92.78 E-value=0.035 Score=58.62 Aligned_cols=99 Identities=13% Similarity=0.263 Sum_probs=62.1
Q ss_pred CCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchh----hhhccccchhhccccCCC--CCCCccchhhccccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLP----VIYDRGLVGIYHDWCESF--GTYPRSYDLLHADHL 617 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~----vI~~RGLig~yhdwce~f--~typrTyDLlHa~~l 617 (689)
...+.|+|+++|.|.++.++... |-. +|+-++-|..+. .+-+.|+-+-.+-.+-.| ..+| .+|++-..++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhh
Confidence 45679999999999999888654 311 233333333332 234456544332233222 2355 4798877777
Q ss_pred cccccCC-cCCccceeeeeccccccCcEEEEeC
Q 044932 618 FSRLKSR-CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 618 fs~~~~~-c~~~~~illEmDRILRP~G~~iirD 649 (689)
+-.+.+. |. .||-++-|.|+|||.++|-|
T Consensus 225 lh~~~~~~~~---~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 225 LYSANEQLST---IMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhcCChHHHH---HHHHHHHHhcCCCCEEEEEE
Confidence 6655432 33 47889999999999998875
No 284
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=92.73 E-value=0.029 Score=56.95 Aligned_cols=96 Identities=10% Similarity=0.162 Sum_probs=56.1
Q ss_pred eEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhc----cccc---h-hhccccCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYD----RGLV---G-IYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~----RGLi---g-~yhdwce~f~typrTyDLlHa~ 615 (689)
..|+|+++|.|.++.+|... +-+ +|+-++- ++-|...-. .++. - +..|+++ ++ + ..+|+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 46999999999999888653 322 2333332 222222111 1211 0 1113322 11 2 358888877
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
..|...... . ...+|-+|-|+|+|||.++|.|.
T Consensus 130 ~~l~~~~~~-~-~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPE-D-RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHH-H-HHHHHHHHHHhcCCCeEEEEeec
Confidence 776654321 2 14578999999999999999974
No 285
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.61 E-value=0.48 Score=48.44 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred EEEECCccchhHHHhhcCC----eEEEEcCCcccHHHHHHHHHHcCCCcEE--ecCCCCCCCCCCCC-cceEEecccccc
Q 044932 312 VLEIGSADLSFVASLLAKE----VLTLTVGLKDDLVDLAQVALERGFPAVV--SPLGNRRLPFPSGV-FDAIHCDGCSIT 384 (689)
Q Consensus 312 VLDVGCGtGsfaa~La~~~----V~gmDIsp~D~seamlq~A~eRGL~~i~--~~~dt~~LPFpD~S-FDlVhcs~cli~ 384 (689)
|.||||--|.++.+|+..+ ++++||++.-. ....+.....|+...+ ...|... +++.+. .|.|+.++.--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999764 88999987532 2333334445654322 2223211 244443 788876542100
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
--..+|......++..-.|++..... ...+...+...+|..+...
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~~----~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNTH----AYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS-----HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCCC----hHHHHHHHHHCCCEEEEeE
Confidence 11256666677777777888876543 2348889999999987654
No 286
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.58 E-value=0.18 Score=55.67 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEE-----ecCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVV-----SPLG 362 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~-----~~~d 362 (689)
++.|....|++ ...+|||+|.|.|.-+.++-+. .++.+..+|. ...+-.-.++.+.... ....
T Consensus 102 L~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~---lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 102 LDELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA---LRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH---HHHHHHHHHhhcccccCCCCCCccc
Confidence 34444445544 3467999999999644433221 2333333331 0111111122221110 1111
Q ss_pred CCCCCCC-CCCcceEEecccccccc-c-cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 363 NRRLPFP-SGVFDAIHCDGCSITWH-A-HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 363 t~~LPFp-D~SFDlVhcs~cli~W~-~-d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..++++| ...|++|+...-+++-- + .....+.-+..+|+|||.|+|.++.
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 2345544 35777777654444411 1 1234777888999999999999865
No 287
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=92.51 E-value=0.064 Score=53.25 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=63.9
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cch----hhhhccccchhhccccCCC----CCCC-ccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTL----PVIYDRGLVGIYHDWCESF----GTYP-RSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL----~vI~~RGLig~yhdwce~f----~typ-rTyDLlHa~~ 616 (689)
+.|+|.++|.|.|+.+|... |- .||+=++-. .-| .-+-..||-.+..=-|... ..+| .++|+|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999888754 21 133333321 111 1122333322211112221 1244 3888887653
Q ss_pred ccc-----cccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhh
Q 044932 617 LFS-----RLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRS 663 (689)
Q Consensus 617 lfs-----~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~ 663 (689)
-.- +.+.|... ..+|-++=|+|+|||.+++. |..+....+...+..
T Consensus 96 pdpw~k~~h~~~r~~~-~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQ-PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CCcCCCCCccccccCC-HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 111 11234442 56788999999999999887 666666666555544
No 288
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.45 E-value=0.063 Score=56.25 Aligned_cols=130 Identities=13% Similarity=0.229 Sum_probs=77.0
Q ss_pred hhhhhhhHHHHHHHHHhhhccc--CCCCCCeeEEeecCCcchh----HHHHhccC-C---ceEEEeccCCCC-Cchhhhh
Q 044932 519 EKLSSDTRHWKAIVDRSYLTGL--GIDWSKIRNVMDMKSIYGG----FAAALAQQ-K---IWVMNVVPVHAP-DTLPVIY 587 (689)
Q Consensus 519 e~f~~D~~~W~~~v~~~y~~~l--~~~~~~iRNvmDMna~~Gg----FAAal~~~-~---vWVMNvvp~~~~-~tL~vI~ 587 (689)
..|..|...|...... .+..| ....+.--.|+|.++|.|- .|..|.+. + -|-..|+-++-. .-|. ++
T Consensus 71 T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~-~A 148 (264)
T smart00138 71 TRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALE-KA 148 (264)
T ss_pred CcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHH-HH
Confidence 4577888889887653 32222 1111233569999999995 55555432 1 233445555432 2221 22
Q ss_pred ccccc-----------------------------------hhhccccCCCCCCCccchhhccccccccccCCcCCcccee
Q 044932 588 DRGLV-----------------------------------GIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIV 632 (689)
Q Consensus 588 ~RGLi-----------------------------------g~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~il 632 (689)
.+|.- =..||-.+. +.-+..||+|.+..+|..... -. ...++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf~~-~~-~~~~l 225 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYFDE-PT-QRKLL 225 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhCCH-HH-HHHHH
Confidence 22211 113555553 223678999999988876532 11 13588
Q ss_pred eeeccccccCcEEEEeCchhh
Q 044932 633 VEMDRILRPGGWAIVRDKVEI 653 (689)
Q Consensus 633 lEmDRILRP~G~~iirD~~~~ 653 (689)
-+|-|+|+|||+++|-....+
T Consensus 226 ~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHhCCCeEEEEECcccC
Confidence 999999999999999865443
No 289
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=92.44 E-value=0.083 Score=57.65 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=72.5
Q ss_pred EEeecCCcchhHHHHhccC-C-ceEEEeccCCCC-Cchh----hhhccccchhhccccCCCCCCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ-K-IWVMNVVPVHAP-DTLP----VIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~-~-vWVMNvvp~~~~-~tL~----vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.|+|+++|.|.++++|... + .- |+-++.. .-|. .+-..|+-+..+ ++..++..+.+||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~---v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIR---LTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 4999999999999988764 2 22 2222211 1110 111223323222 334455567899999998777432
Q ss_pred cC-CcCCccceeeeeccccccCcEEEEeCch--hhHHHHHHHHhhcceeEEEeecCCCceEEEEEec
Q 044932 622 KS-RCRQPVSIVVEMDRILRPGGWAIVRDKV--EILDPLEGILRSLHWEIRMTYAQDKEGILCAQKT 685 (689)
Q Consensus 622 ~~-~c~~~~~illEmDRILRP~G~~iirD~~--~~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K~ 685 (689)
.. .......++-++-|.|+|||.++|=-+. .+-..++..-.. +.+....++=+|+-|+|.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~----~~~la~~~~f~v~~a~~~ 337 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS----HEVLAQTGRFKVYRAIMT 337 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC----eEEEEeCCCEEEEEEEcc
Confidence 11 1111356788999999999999875332 223333333322 233333445678888764
No 290
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.31 E-value=0.076 Score=57.00 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=70.6
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhh----hhcccc---chhh-ccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPV----IYDRGL---VGIY-HDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~v----I~~RGL---ig~y-hdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+.+|.|.++.+|... +.+ +|+-++- +..|.+ +...|+ |-++ .|+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~--~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDA--EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 46999999999999998753 322 3444443 223322 222343 2222 24444332 358999987621
Q ss_pred cccc------------c---------CCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHh--hcceeEEEeecC
Q 044932 618 FSRL------------K---------SRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILR--SLHWEIRMTYAQ 674 (689)
Q Consensus 618 fs~~------------~---------~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~--~lrW~~~~~~~~ 674 (689)
+... . +...+...|+-+.-++|+|||.+++.-..+ ...+..+.. ++.|- ..+.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~~---~~~~ 286 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTWL---EFEN 286 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEEE---EecC
Confidence 1100 0 001112456778889999999999863323 345666664 34562 2223
Q ss_pred CCceEEEEEe
Q 044932 675 DKEGILCAQK 684 (689)
Q Consensus 675 ~~E~iL~~~K 684 (689)
...+++++.+
T Consensus 287 ~~~~~~~~~~ 296 (307)
T PRK11805 287 GGDGVFLLTR 296 (307)
T ss_pred CCceEEEEEH
Confidence 4456665543
No 291
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.29 E-value=1 Score=46.57 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccH-------HHHHHHHHHcCCCcE------EecC-CCCCCC-CC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDL-------VDLAQVALERGFPAV------VSPL-GNRRLP-FP 369 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~s-------eamlq~A~eRGL~~i------~~~~-dt~~LP-Fp 369 (689)
...+|+|+=-|.|.|+.-|... .-.+..+.|.+.. ..+...+++.+.... +..+ ..+.+. .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 4579999999999998877643 1133455554321 122223322221111 0001 111111 23
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc------------hhHHHHHHHHHHhcceeEEEe
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS------------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~------------le~~~~ie~La~~l~W~~v~~ 435 (689)
..++|.++-..+ +| .....++.+++++.|||||.+++.+.... +.....+.+.+.+.+|.+.++
T Consensus 128 ~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 128 TAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 345554433322 33 34567899999999999999999875310 111234566677788877654
No 292
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=92.20 E-value=0.056 Score=44.38 Aligned_cols=95 Identities=24% Similarity=0.245 Sum_probs=55.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh---hccc---cchhhc-cccCCCCCCCccchhhcccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI---YDRG---LVGIYH-DWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI---~~RG---Lig~yh-dwce~f~typrTyDLlHa~~lfs~ 620 (689)
.++|+++|.|+++..+...+. ..++-++.. +-+... ...+ .+=+++ |+.+...+-+.+||++.+++.|..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 379999999999988876321 123322221 111100 0111 111222 222222124678999999999876
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
.. -. ...++-.+-+.|||+|++++.
T Consensus 79 ~~--~~-~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LV--ED-LARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh--hH-HHHHHHHHHHHcCCCCEEEEE
Confidence 31 12 245677888999999999986
No 293
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.10 E-value=0.26 Score=51.09 Aligned_cols=96 Identities=25% Similarity=0.283 Sum_probs=51.5
Q ss_pred eEEEECCccchhHHHhhcC----CeEEEEcCCc--ccHHHHHHHHHHc---C-CCcEEecCCC-----------------
Q 044932 311 VVLEIGSADLSFVASLLAK----EVLTLTVGLK--DDLVDLAQVALER---G-FPAVVSPLGN----------------- 363 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~----~V~gmDIsp~--D~seamlq~A~eR---G-L~~i~~~~dt----------------- 363 (689)
.+.|||||.|++...|... -++||.|--. |--.+.++.++.+ | ++. ++++-+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhccccc
Confidence 5899999999998888754 3788876322 1112333332221 1 110 111111
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.-+.|||-.|-..-.-.-.+ -..++.|..=+||+||.++..+-.
T Consensus 142 mff~fpdpHfk~~khk~rii-----~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRII-----TSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ceeecCChhHhhhhccceee-----chhHHHHHHhhhhcCceEEEEeeH
Confidence 11124444443321110011 126889999999999999987654
No 294
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=92.06 E-value=2.3 Score=45.94 Aligned_cols=126 Identities=22% Similarity=0.166 Sum_probs=74.2
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCcEE--ecC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPAVV--SPL 361 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~i~--~~~ 361 (689)
+..|..+|. +. ++.+||+.|.|.|++.-+++.. .++..++. +...+.|++ .|+.... ..-
T Consensus 94 ia~I~~~L~-i~---PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH-----~~Ra~ka~eeFr~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 94 IAMILSMLE-IR---PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH-----ETRAEKALEEFREHGIGDNVTVTHR 164 (314)
T ss_pred HHHHHHHhc-CC---CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec-----HHHHHHHHHHHHHhCCCcceEEEEe
Confidence 344555553 33 3578999999999987776642 47888873 334444443 4655332 222
Q ss_pred CCCCCCC--CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 362 GNRRLPF--PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 362 dt~~LPF--pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
|.....| .+..+|+|+.-. . .|-.++--++.+||-+|.-+++-.+ .++.-+.--+++.+++|..+.
T Consensus 165 DVc~~GF~~ks~~aDaVFLDl-P-----aPw~AiPha~~~lk~~g~r~csFSP-CIEQvqrtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFLDL-P-----APWEAIPHAAKILKDEGGRLCSFSP-CIEQVQRTCEALRSLGFIEIE 232 (314)
T ss_pred ecccCCccccccccceEEEcC-C-----ChhhhhhhhHHHhhhcCceEEeccH-HHHHHHHHHHHHHhCCCceEE
Confidence 3223334 368899997531 1 3335666677799988854444433 344333445567888997654
No 295
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.00 E-value=1.4 Score=47.31 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCeEEEECCccchhHHHhh-c-----CCeEEEEcCCcccHHHHHHHHHH-----cCC--CcEEecCCCCCCCCCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLL-A-----KEVLTLTVGLKDDLVDLAQVALE-----RGF--PAVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La-~-----~~V~gmDIsp~D~seamlq~A~e-----RGL--~~i~~~~dt~~LPFpD~SFDl 375 (689)
.++|+=||||.=-+++-++ . ..|.++|++|. +++.|++ .|+ ...+...+....+..-..||+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~-----A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPE-----ANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHH-----HHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHH-----HHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 4699999999776554333 2 23788999874 2222221 122 223444554445554579999
Q ss_pred EEecc-ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccC-ceeEEEEEeCC
Q 044932 376 IHCDG-CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEIS-EMGVKIYQKPE 452 (689)
Q Consensus 376 Vhcs~-cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g-~~~i~IwqKp~ 452 (689)
|+.+. +.+. ..+...+|..+.+.++||..++++..++.+.--........--+|+....-.-+.. .+.+.++||+.
T Consensus 196 V~lAalVg~~-~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 196 VFLAALVGMD-AEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp EEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred EEEhhhcccc-cchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 98653 2211 23678999999999999999999977654421000111112228887654332211 24588888875
No 296
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.70 E-value=0.92 Score=51.22 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=72.2
Q ss_pred CCCeEEEECCccch---hHHHhh-cCC-eEEEEcCCcccHHHHHHHHHHcCCCcEEe-cCCCCCCC---CCCCCcceEE-
Q 044932 308 NIRVVLEIGSADLS---FVASLL-AKE-VLTLTVGLKDDLVDLAQVALERGFPAVVS-PLGNRRLP---FPSGVFDAIH- 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGs---faa~La-~~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~-~~dt~~LP---FpD~SFDlVh- 377 (689)
.+-+|||+.|-.|+ +-++|. ..+ |++.|..-.-. ....+.+.+-|+...+. ..|...+| |+. +||-|.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 56789999999996 334444 445 66777654211 23334445557766543 45555555 774 999997
Q ss_pred ---eccc-------ccccccc----------HHHHHHHHHhccCCCcEEEEEcCCCchhHH-HHHHHHHHhc-ceeEE
Q 044932 378 ---CDGC-------SITWHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIEEE-EALTTLTASI-CWNIL 433 (689)
Q Consensus 378 ---cs~c-------li~W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~-~~ie~La~~l-~W~~v 433 (689)
|+.. ++-|... -.++|.-.-..++|||+|+.++=.-..++. ..+..++.+. +.+++
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~ 396 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLV 396 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEec
Confidence 5531 1111110 124566667789999999999754333332 3355555655 55544
No 297
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=91.57 E-value=0.23 Score=53.54 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=31.0
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR 352 (689)
..++||++||.|+++.+++.. .|+|+|.+| .+++.|.++
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~-----~al~~ak~~ 63 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP-----DAIAAAKDR 63 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH-----HHHHHHHHh
Confidence 458999999999999888753 399999876 467777654
No 298
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=91.37 E-value=0.5 Score=50.19 Aligned_cols=66 Identities=26% Similarity=0.209 Sum_probs=45.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCCC-CcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPSG-VFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD~-SFDlVhcs 379 (689)
..+||+||+|.|.++..|+++ .|+++.+++. +++...++. -...+...|+...+|++. .++.|++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~-----l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRR-----LAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHH-----HHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 578999999999999999976 4899998863 444444432 122344556677777743 57777653
No 299
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.33 E-value=0.084 Score=53.35 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=47.9
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccchhhccccCCCCCCC--ccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYP--RSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typ--rTyDLlHa~~lfs~ 620 (689)
..|+|+++|+|.+++.|... .|.-+-+.|.-..-.-..+-.-|+-.+---.+..+..++ ..||+|++.+.+.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~- 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP- 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc-
Confidence 47999999999999877542 333222222111000001111132111112223333332 6799998866443
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
.+.-.+-+.|+|||.+++-
T Consensus 157 ---------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 157 ---------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ---------cchHHHHHhhCCCcEEEEE
Confidence 2333455689999998884
No 300
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=91.27 E-value=0.16 Score=53.57 Aligned_cols=134 Identities=20% Similarity=0.274 Sum_probs=77.9
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhc----ccc---ch-hhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYD----RGL---VG-IYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~----RGL---ig-~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|... +-+ +|+-++. +..|.+... .|+ |= +..||.+.++ +..||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCC
Confidence 46999999999999988753 322 2333332 223322221 133 11 2257777652 237898766411
Q ss_pred ccc------------ccCC---------cCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHh-hccee-EEEe-ec
Q 044932 618 FSR------------LKSR---------CRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILR-SLHWE-IRMT-YA 673 (689)
Q Consensus 618 fs~------------~~~~---------c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~-~lrW~-~~~~-~~ 673 (689)
+-. +... -.....|+-+.-++|+|||++++--...--..+..+.. ...|. +.+. |-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 100 0000 01124466677889999999999866566667777765 45664 4443 55
Q ss_pred CCCceEEEEEec
Q 044932 674 QDKEGILCAQKT 685 (689)
Q Consensus 674 ~~~E~iL~~~K~ 685 (689)
.+.++++++++.
T Consensus 272 ~g~~R~~~~~~~ 283 (284)
T TIGR00536 272 NGKERVVLGFYH 283 (284)
T ss_pred CCCceEEEEEec
Confidence 668899998753
No 301
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=91.26 E-value=0.074 Score=54.73 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=55.8
Q ss_pred eEEeecCCcchhHHHHhcc---CCceEEEeccCCC-CCchhhhhc----ccc---chhhccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQ---QKIWVMNVVPVHA-PDTLPVIYD----RGL---VGIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~---~~vWVMNvvp~~~-~~tL~vI~~----RGL---ig~yhdwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.++.+|.. .+-| .|+=++. +.-|...-. .|+ |-+++.-.+.++ + ..+|+|-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I-ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C-CCCCEEehhh
Confidence 3599999999999887754 3333 2333332 222222211 122 222221122222 2 3488877766
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
.|..... .. ...++-+|-|+|+|||.+++.|.
T Consensus 134 ~l~~l~~-~~-~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEP-SE-RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCH-HH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence 6654432 22 25689999999999999999873
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=91.09 E-value=0.53 Score=49.75 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCCCCcceEEec--ccc--------cccc-----ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 368 FPSGVFDAIHCD--GCS--------ITWH-----AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 368 FpD~SFDlVhcs--~cl--------i~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+++++||+|++. ... -.|. .-....|.++.|+|||||.|++.....
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Confidence 567888888874 110 0010 112468899999999999999975543
No 303
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.03 E-value=0.56 Score=50.47 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=44.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc--CCC--cEEe--cCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER--GFP--AVVS--PLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR--GL~--~i~~--~~dt~~LPFpD~SFDlVhc 378 (689)
....||++|-|||.++..|++. .|+++.++|. |+....+| |.+ ..+. ..|...+++| .||.+++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr-----mvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVs 129 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR-----MVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVS 129 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH-----HHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeec
Confidence 5679999999999999999875 5999999885 55555554 544 2222 2333444555 7888876
No 304
>PRK14967 putative methyltransferase; Provisional
Probab=90.94 E-value=0.14 Score=51.69 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=63.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hcccc--chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGL--VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGL--ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
-.|+|+++|.|.++..|...+.- +|+-++- +..+... ...|+ .-+-.|+.+.+. +..||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 36999999999998887664321 2333332 2223211 11232 111234444332 368999998743321
Q ss_pred cc-----------------CCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeEEE
Q 044932 621 LK-----------------SRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 621 ~~-----------------~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~~~ 670 (689)
-. .....+..++-++-|+|+|||.+++= .+..-+..+..++++-.|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 10 01111245666789999999999872 2222334455555555555443
No 305
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.89 E-value=0.98 Score=47.34 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHcC------CCcEEecCCCCCCC-CCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALERG------FPAVVSPLGNRRLP-FPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eRG------L~~i~~~~dt~~LP-FpD~SFDlVh 377 (689)
.+++||.||-|-|.....+.++. -+.+.-. +..++.-++-| +....+... .-+| ++|+.||-|.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~h-----p~V~krmr~~gw~ek~nViil~g~We-Dvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH-----PDVLKRMRDWGWREKENVIILEGRWE-DVLNTLPDKHFDGIY 174 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecC-----HHHHHHHHhcccccccceEEEecchH-hhhccccccCcceeE
Confidence 45799999999998777777653 2334433 33444444332 211122110 1122 7899999997
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
--- .-+.-++...+..-+.|+|||+|.|-+.-
T Consensus 175 yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 431 11223455567778999999999987764
No 306
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=90.84 E-value=0.087 Score=55.91 Aligned_cols=120 Identities=24% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEec-CCCCCC-C-CCCCCcceEEe-
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSP-LGNRRL-P-FPSGVFDAIHC- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~-~dt~~L-P-FpD~SFDlVhc- 378 (689)
....|||+++|.|+-+.+|+. . .|++.|+++.-. ......+.+-|+..+... .|+..+ + ++...||.|++
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 456899999999985544442 2 388999887421 222333344476654332 343332 2 23346999984
Q ss_pred ---ccc-------ccccc--ccH--------HHHHHHHHhcc----CCCcEEEEEcCCCch-hHHHHHHHHHHhc
Q 044932 379 ---DGC-------SITWH--AHG--------GKLLLEMNRIL----RPSGYFILSTKHDSI-EEEEALTTLTASI 428 (689)
Q Consensus 379 ---s~c-------li~W~--~d~--------~~aL~EI~RVL----RPGG~fVIsdp~~~l-e~~~~ie~La~~l 428 (689)
+.. .+.|. ... ..+|....+.| ||||+++.++=.-.. +.+.-++.+++..
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 321 01121 111 25788899999 999999999743222 2233455555553
No 307
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.74 E-value=0.12 Score=45.79 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=53.0
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhh----hhccccchh--h-cc--ccCCCCCCCcc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPV----IYDRGLVGI--Y-HD--WCESFGTYPRS 608 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~v----I~~RGLig~--y-hd--wce~f~typrT 608 (689)
+.+..+ ..|+|+++|.|.++..+... +- .+|+-++-. ..+.. +...|+-.+ . .| |+ +...+.+
T Consensus 15 ~~~~~~--~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 88 (124)
T TIGR02469 15 LRLRPG--DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA--LEDSLPE 88 (124)
T ss_pred cCCCCC--CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc--ChhhcCC
Confidence 444433 48999999999999888653 21 234444422 22211 112222111 1 11 22 2223457
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
||.|=..+.+. . +..++-++-|.|+|||++++.
T Consensus 89 ~D~v~~~~~~~------~-~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG------L-LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch------h-HHHHHHHHHHHcCCCCEEEEE
Confidence 88875433222 1 145788899999999999974
No 308
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=90.66 E-value=3.3 Score=42.22 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHc----CCCc--EEecCCCC-CCCCCCC--CcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALER----GFPA--VVSPLGNR-RLPFPSG--VFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eR----GL~~--i~~~~dt~-~LPFpD~--SFDlV 376 (689)
+.++||+=+|+|++|..-+.++ ++.++.+.. ..+.+.+. ++.. .+...++. -|+-... .||+|
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~-----a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRK-----AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHH-----HHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence 4689999999999998877764 777887653 33333322 3222 22223332 2222223 49999
Q ss_pred Eeccccccccc---cHHHHHH--HHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 377 HCDGCSITWHA---HGGKLLL--EMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 377 hcs~cli~W~~---d~~~aL~--EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
+.-- |+.. +....+. +-...|+|+|.+++-.....- +. -.--+|.+..++. .|...+.+|+.
T Consensus 119 flDP---Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~-----~~--~~~~~~~~~r~k~--yG~t~l~~y~~ 185 (187)
T COG0742 119 FLDP---PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDVE-----LP--ELPANFELHREKK--YGQTKLTFYRR 185 (187)
T ss_pred EeCC---CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCcC-----cc--ccCCCeEEEEEee--cCCEEEEEEEe
Confidence 8631 2221 1123333 366889999999998765321 11 1223677776544 35555666654
No 309
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=90.63 E-value=1.1 Score=43.60 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCCCeeEEeecCCcchhHHHHhccCCceE-----EEeccCCCCCchhhhhccccc---hhhccccCCCCCCCccchhhc
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQQKIWV-----MNVVPVHAPDTLPVIYDRGLV---GIYHDWCESFGTYPRSYDLLH 613 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~~~vWV-----MNvvp~~~~~tL~vI~~RGLi---g~yhdwce~f~typrTyDLlH 613 (689)
++.+.-.+|+|.+|.-|||...+..+.... +-+.|...+.....| +|=| .+.....+.++.-.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 566678999999999999999998776222 333333111111222 3321 111122333322226899999
Q ss_pred cccccccccCC-------cCCccceeeeeccccccCcEEEEe-----CchhhHHHHHHHHhhcceeEEEe-ecCCCceEE
Q 044932 614 ADHLFSRLKSR-------CRQPVSIVVEMDRILRPGGWAIVR-----DKVEILDPLEGILRSLHWEIRMT-YAQDKEGIL 680 (689)
Q Consensus 614 a~~lfs~~~~~-------c~~~~~illEmDRILRP~G~~iir-----D~~~~l~~v~~i~~~lrW~~~~~-~~~~~E~iL 680 (689)
+|+-+..-.++ ..+....|.=+-..|+|||.+|+- +..+++..++..-...++---.. -....|.+|
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 99955432211 000011122223569999987774 22356666665444433321111 124578999
Q ss_pred EEEe
Q 044932 681 CAQK 684 (689)
Q Consensus 681 ~~~K 684 (689)
||..
T Consensus 177 v~~~ 180 (181)
T PF01728_consen 177 VCRG 180 (181)
T ss_dssp ESEE
T ss_pred EEcC
Confidence 9874
No 310
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=90.56 E-value=0.14 Score=53.38 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhh----ccccchhhccccCCCCC-CCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIY----DRGLVGIYHDWCESFGT-YPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~----~RGLig~yhdwce~f~t-yprTyDLlHa~~lfs~ 620 (689)
..|+|+.+|.|.|+.+|... +-. +|+-++. +..+...- ..|+--+-.|+.+.++. +...||+|=++=-+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~--~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI--ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999887642 211 2333332 12221111 11211122344443321 2346888866543321
Q ss_pred c-------------cCCcC---------CccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEEeecCC
Q 044932 621 L-------------KSRCR---------QPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTYAQD 675 (689)
Q Consensus 621 ~-------------~~~c~---------~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~~~~~ 675 (689)
. ..++. ++..|+-...++|+|||.+++-=..+-...|..++....|...+..|.+
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1 11111 1235666778999999999987666667788888888888888876654
No 311
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=90.51 E-value=0.11 Score=52.25 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=48.8
Q ss_pred eEEeecCCcchhHHHHhccC--C-ceEEEeccCCC-CCchh----hhhcccc---chhhccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--K-IWVMNVVPVHA-PDTLP----VIYDRGL---VGIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~-vWVMNvvp~~~-~~tL~----vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.+++.|... + .. |+-++- +.-+. .+...|+ .=+..|..+.+.. ...||+|+.++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~---V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGL---VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCE---EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcC
Confidence 36999999999999988653 1 11 222221 11111 1222333 1122244333332 25899998765
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
... .+.-.+=+.|+|||.+++-
T Consensus 155 ~~~----------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 AGP----------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred Ccc----------cccHHHHHhcCcCcEEEEE
Confidence 432 2333456889999999884
No 312
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=90.41 E-value=0.15 Score=53.98 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=64.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhh----hcccc---chhh-ccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVI----YDRGL---VGIY-HDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI----~~RGL---ig~y-hdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+.+|.|.++.+|... +-+ +|+-++-. ..|.+. ...|+ |-++ -|+-+.++ +.+||+|-++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 46999999999999999754 212 24444332 222221 22243 2122 23333331 347999887521
Q ss_pred cccc---------------------cCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcce
Q 044932 618 FSRL---------------------KSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHW 666 (689)
Q Consensus 618 fs~~---------------------~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW 666 (689)
+... .+...+...|+-+.-+.|+|||++++.-.... ..|+.+.....|
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF 267 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence 1100 01111124567788899999999998744333 678888865444
No 313
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.95 E-value=0.12 Score=51.23 Aligned_cols=95 Identities=26% Similarity=0.329 Sum_probs=54.0
Q ss_pred eEEeecCCcchhHHHHhccCC--ceEEEeccCCC-CCchhhhhcc----cc---chhhc-cccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK--IWVMNVVPVHA-PDTLPVIYDR----GL---VGIYH-DWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~--vWVMNvvp~~~-~~tL~vI~~R----GL---ig~yh-dwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.++..|...- .. +|+-++. ++.+...-.+ ++ +-+++ |. +.++.=+.+||+|.+.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTG--EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-EALPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc-ccCCCCCCCccEEEEec
Confidence 359999999999987775421 11 1222222 1222111111 11 11122 22 12232356899999877
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++... .. ...+|-.+-++|+|||.+++-+
T Consensus 130 ~l~~~---~~-~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNV---PD-IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccC---CC-HHHHHHHHHHhccCCcEEEEEE
Confidence 66433 33 3567889999999999998754
No 314
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=89.81 E-value=0.094 Score=46.49 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=34.2
Q ss_pred EEECCccchhHHHhhc----C---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCC-CCC-CCCCCcceEEeccc
Q 044932 313 LEIGSADLSFVASLLA----K---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNR-RLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 313 LDVGCGtGsfaa~La~----~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~-~LP-FpD~SFDlVhcs~c 381 (689)
|++|+..|..+..++. . .++++|..+. .+...+.+.+.++.. .+...++. -++ +++.+||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899888876665553 2 3788887662 112223333333332 22222221 111 33689999986542
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+. .+.....|..+.+.|+|||.+++-+
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1233467888899999999998864
No 315
>PRK06922 hypothetical protein; Provisional
Probab=89.78 E-value=0.088 Score=62.11 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=58.3
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcc----cc-chhhccccCCCC--CCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDR----GL-VGIYHDWCESFG--TYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~R----GL-ig~yhdwce~f~--typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|... + -.+|+-++-. +.|...-.+ |. +-+.+.=+..++ .-|.+||+|..+.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 47999999999998877642 2 1133333332 222221111 11 111111133344 236899999887655
Q ss_pred cccc----------CCcCCccceeeeeccccccCcEEEEeCc
Q 044932 619 SRLK----------SRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 619 s~~~----------~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
-.+- +.-. +..+|-++-|+|+|||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~ed-l~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEV-IKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHH-HHHHHHHHHHHcCCCcEEEEEeC
Confidence 4321 1123 25689999999999999999873
No 316
>PRK07402 precorrin-6B methylase; Provisional
Probab=89.66 E-value=0.31 Score=48.12 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=27.0
Q ss_pred cceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcc
Q 044932 629 VSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLH 665 (689)
Q Consensus 629 ~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lr 665 (689)
..++-++-|+|+|||.+++-.. .+.+..+...++.++
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 6788999999999999888753 335555666665543
No 317
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.93 E-value=1.5 Score=48.33 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCeEEEECCccc--hhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC-CCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADL--SFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtG--sfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP-FpD~SFDlVhcs~c 381 (689)
+...|+=+|+| | ..+..++. ..|+++|.++ ..++.|++-|....+...+...+. .. ..||+|+..-.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~-----~K~e~a~~lGAd~~i~~~~~~~~~~~~-~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSE-----EKLELAKKLGADHVINSSDSDALEAVK-EIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCCh-----HHHHHHHHhCCcEEEEcCCchhhHHhH-hhCcEEEECCC
Confidence 45788888888 6 35555543 5799999875 567888888876555422222221 22 34999985422
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+ ..+....+.||+||.+++..-+
T Consensus 239 --~------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 --P------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --h------hhHHHHHHHHhcCCEEEEECCC
Confidence 2 6888999999999999998755
No 318
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=88.51 E-value=0.12 Score=48.73 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=57.7
Q ss_pred eEEeecCCcchhHHHHhcc-C--CceEEEeccCCCCCchh---hhh-ccccc--hhh-ccccCCCCC-CCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQ-Q--KIWVMNVVPVHAPDTLP---VIY-DRGLV--GIY-HDWCESFGT-YPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~-~--~vWVMNvvp~~~~~tL~---vI~-~RGLi--g~y-hdwce~f~t-yprTyDLlHa~~ 616 (689)
-+|+|+++|+|.++-.|.. . +.=|+.|=.. +.-+. -.+ ..|+- =.+ .|+=+ ++. |+..||+|.+.+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s--~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDIS--EEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESS--HHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECc--HHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 3699999999999988883 1 2223332211 11111 111 12332 112 12222 221 448899999999
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCch
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV 651 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~ 651 (689)
+|....+. ..+|-+|=|.|+|+|.+++.+-.
T Consensus 82 ~l~~~~~~----~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDP----EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHH----HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCH----HHHHHHHHHHcCCCcEEEEEECC
Confidence 98444333 34677999999999999999866
No 319
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=88.44 E-value=0.13 Score=49.74 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=37.4
Q ss_pred ccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 598 WCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 598 wce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
=++.++.-+.+||+|=+...+..+.++ ..+|-||-|+|+|||.++|-|-
T Consensus 34 d~~~lp~~~~~fD~v~~~~~l~~~~d~----~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 34 DAIDLPFDDCEFDAVTMGYGLRNVVDR----LRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred chhhCCCCCCCeeEEEecchhhcCCCH----HHHHHHHHHHcCcCeEEEEEEC
Confidence 356677667899999877666655433 4468999999999999988763
No 320
>PRK06202 hypothetical protein; Provisional
Probab=88.21 E-value=0.2 Score=50.65 Aligned_cols=100 Identities=14% Similarity=0.237 Sum_probs=61.5
Q ss_pred CeeEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhcccc---chhhccccCCCCCCCccchhhcccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
.-..|+|.++|.|.++.+|... .-.-.+|+-++- ++-|.....+.. +-...--++.++.-+.+||+|-++++|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 4467999999999998877531 111234666654 244433333210 111111245566667899999999998
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
....+. . +..+|-||-|+|| |.++|.|
T Consensus 140 hh~~d~-~-~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 140 HHLDDA-E-VVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ecCChH-H-HHHHHHHHHHhcC--eeEEEec
Confidence 776543 2 1347889999999 5666665
No 321
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=87.90 E-value=0.6 Score=43.14 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.7
Q ss_pred eEEEECCccchhHHHhhcC----CeEEEEcCCc
Q 044932 311 VVLEIGSADLSFVASLLAK----EVLTLTVGLK 339 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~----~V~gmDIsp~ 339 (689)
++||+|||+|.++..++.. .|++++.+|.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 4899999999988777643 3788887764
No 322
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=87.76 E-value=1.2 Score=51.28 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPA 356 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~ 356 (689)
....+||+-||||.++.+|+.. .|+|+.++|..+. .+-.-|...|+.+
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~-dA~~nA~~NgisN 432 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE-DAEKNAQINGISN 432 (534)
T ss_pred CCcEEEEEeecCCceehhhhccccceeeeecChhhcc-hhhhcchhcCccc
Confidence 3478999999999999999875 6999999885432 2333344456543
No 323
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.37 E-value=14 Score=38.94 Aligned_cols=139 Identities=14% Similarity=0.086 Sum_probs=81.3
Q ss_pred eEEEECCccchhHHHhhcCC----eEEEEcCCcccHHHHHHHHHHcCCCcEEe--cCCCCCCCC-CCCCcceEEeccccc
Q 044932 311 VVLEIGSADLSFVASLLAKE----VLTLTVGLKDDLVDLAQVALERGFPAVVS--PLGNRRLPF-PSGVFDAIHCDGCSI 383 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~~----V~gmDIsp~D~seamlq~A~eRGL~~i~~--~~dt~~LPF-pD~SFDlVhcs~cli 383 (689)
++.||||--|.++.+|...+ +++.|+++.-. ...+......++.-.+. .+|. -.++ ++..+|.|+.++.-=
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 49999999999999998653 77888887533 23333333344433222 2332 1234 345899987653210
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc-cCcee-EEEEEeCCCchhHh
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE-ISEMG-VKIYQKPESNDIYE 458 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~-~g~~~-i~IwqKp~~~~cy~ 458 (689)
. --..+|.|-..-|+-==+|++..-... ..+++.+....|....+.--. -+..| |++..+.....||.
T Consensus 97 ~---lI~~ILee~~~~l~~~~rlILQPn~~~----~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~~~~~~~ 166 (226)
T COG2384 97 T---LIREILEEGKEKLKGVERLILQPNIHT----YELREWLSANSYEIKAETILEEDGKIYEILVVEKSSKPALYA 166 (226)
T ss_pred H---HHHHHHHHhhhhhcCcceEEECCCCCH----HHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCCchhhhh
Confidence 0 112566677777764446666544321 237889999999987653321 13334 66666655556663
No 324
>PRK04266 fibrillarin; Provisional
Probab=87.32 E-value=0.14 Score=52.78 Aligned_cols=96 Identities=11% Similarity=0.260 Sum_probs=50.3
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC----CceEEEeccCCCCCchhhh----hcc-ccchhhccccCCC--CCCCcc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ----KIWVMNVVPVHAPDTLPVI----YDR-GLVGIYHDWCESF--GTYPRS 608 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~----~vWVMNvvp~~~~~tL~vI----~~R-GLig~yhdwce~f--~typrT 608 (689)
+.+..+. .|||.++|.|+++..|... .|+-+-+-| .-|..+ -.| ++..+..|-.+++ ...+.+
T Consensus 68 l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 68 FPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhcccc
Confidence 4566553 5999999999999888764 244332222 111111 111 2233333433321 112445
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEE
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
+|+| |+.....=. ...+|-++-|+|+|||.++|
T Consensus 142 ~D~i-----~~d~~~p~~-~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 142 VDVI-----YQDVAQPNQ-AEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CCEE-----EECCCChhH-HHHHHHHHHHhcCCCcEEEE
Confidence 6664 221111001 01245699999999999999
No 325
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.05 E-value=8.5 Score=40.80 Aligned_cols=123 Identities=23% Similarity=0.295 Sum_probs=62.1
Q ss_pred CCCeEEEECCccc-hhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCC---CCCcceEEeccc
Q 044932 308 NIRVVLEIGSADL-SFVASLLA--KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFP---SGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtG-sfaa~La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFp---D~SFDlVhcs~c 381 (689)
.+++||=||=..- +++.+|.. ..|+++||+.... .-.-..|.+.|++......|. +-|+| -+.||++++--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~Dl-R~~LP~~~~~~fD~f~TDP- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDL-RDPLPEELRGKFDVFFTDP- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---T-TS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecc-cccCCHHHhcCCCEEEeCC-
Confidence 3578999986555 35666654 4699999986422 122234566788865555553 44444 38999998742
Q ss_pred cccccccH-HHHHHHHHhccCCCc---EEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHG-GKLLLEMNRILRPSG---YFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~-~~aL~EI~RVLRPGG---~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+|+... ..++.--...||..| +|.++..+.....|..+++++..|++-+...
T Consensus 121 --PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 121 --PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred --CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 344332 344555556777655 4444444444566777999999999876543
No 326
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=86.35 E-value=4.1 Score=44.87 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=45.7
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC--------C-----ch-hHHHHHHHHHHhcceeEEEee
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH--------D-----SI-EEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~--------~-----~l-e~~~~ie~La~~l~W~~v~~~ 436 (689)
++||+|+..+ .|.-..+.-.+|.-|..+|+|||+++=.+|. + .+ ...+.+..++..++|+++.++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699876321 2332235567899999999999999977653 1 11 124668899999999998765
No 327
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.96 E-value=0.31 Score=45.71 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=27.0
Q ss_pred CcceEEeccc----ccccccc-HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 372 VFDAIHCDGC----SITWHAH-GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 372 SFDlVhcs~c----li~W~~d-~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.||+|.|..+ +++|.++ ...+|.-+.+.|||||+|++-..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4899998642 2223222 246889999999999999998654
No 328
>PRK04457 spermidine synthase; Provisional
Probab=85.56 E-value=1.1 Score=47.18 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=67.4
Q ss_pred CeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhcc-cc------chhhc-cccCCCCCCCccchhhccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDR-GL------VGIYH-DWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~R-GL------ig~yh-dwce~f~typrTyDLlHa~ 615 (689)
.-++|+|+++|.|.++..|... |. +.|+-++- |..+.+.-+. ++ +-+.+ |.=+-+...|.+||+|=.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4578999999999999877543 21 11222222 2222211111 11 11111 1111123457789999655
Q ss_pred ccccccc--CCcCCccceeeeeccccccCcEEEEe---CchhhHHHHHHHHhhcceeEEEee-cCCCceEEEEEe
Q 044932 616 HLFSRLK--SRCRQPVSIVVEMDRILRPGGWAIVR---DKVEILDPLEGILRSLHWEIRMTY-AQDKEGILCAQK 684 (689)
Q Consensus 616 ~lfs~~~--~~c~~~~~illEmDRILRP~G~~iir---D~~~~l~~v~~i~~~lrW~~~~~~-~~~~E~iL~~~K 684 (689)
. |+... .... ...++-++=++|+|||.++|- .+..+-.-++.+...+.-.+-+.. .....-|++|.|
T Consensus 144 ~-~~~~~~~~~l~-t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGIIDALC-TQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred C-CCCCCCccccC-cHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 2 33211 1111 146778888999999999882 332233333444444432222221 122356888876
No 329
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=85.52 E-value=0.52 Score=47.06 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=47.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----ccccch--hhccccCCCCCCC--ccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGLVG--IYHDWCESFGTYP--RSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGLig--~yhdwce~f~typ--rTyDLlHa~~lf 618 (689)
..|+|+++|+|.+++.|.... - .|+-++-. +-+...- .-|+-. +.+ ...+.++| .+||+|..+..+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~-~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLV-R--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CEEEEECCCccHHHHHHHHHh-C--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEccCc
Confidence 469999999999988776531 1 23333321 2111111 113311 111 11233343 689999877644
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
..+ .-++-+.|+|||.+++-
T Consensus 155 ~~~----------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 155 PEI----------PRALLEQLKEGGILVAP 174 (212)
T ss_pred hhh----------hHHHHHhcCCCcEEEEE
Confidence 322 22345789999998874
No 330
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=85.50 E-value=0.84 Score=51.60 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCC-CCchhhh----hcccc-ch-h
Q 044932 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHA-PDTLPVI----YDRGL-VG-I 594 (689)
Q Consensus 523 ~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~-~~tL~vI----~~RGL-ig-~ 594 (689)
.+|+.+...+-+. + ..+ .+|+|+++|.|.++.+|.. .+-+ +|+-++- +..|.+. -..|+ |- +
T Consensus 236 peTE~LVe~aL~~----l--~~~--~rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~fi 305 (423)
T PRK14966 236 PETEHLVEAVLAR----L--PEN--GRVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEFA 305 (423)
T ss_pred ccHHHHHHHhhhc----c--CCC--CEEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4566666655431 1 122 2699999999999988764 2322 2333332 2222211 11221 11 2
Q ss_pred hccccCCCCCCCccchhhcccccccccc---------------------CCcCCccceeeeeccccccCcEEEEeCchhh
Q 044932 595 YHDWCESFGTYPRSYDLLHADHLFSRLK---------------------SRCRQPVSIVVEMDRILRPGGWAIVRDKVEI 653 (689)
Q Consensus 595 yhdwce~f~typrTyDLlHa~~lfs~~~---------------------~~c~~~~~illEmDRILRP~G~~iirD~~~~ 653 (689)
..||.+....-...||+|-++-=+.... +...+...|+-+.-+.|+|||++++-=..+-
T Consensus 306 ~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q 385 (423)
T PRK14966 306 HGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ 385 (423)
T ss_pred EcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH
Confidence 2355443110123689988754331110 1111112344555678999999988655566
Q ss_pred HHHHHHHHhhcceeE-EE-eecCCCceEEEEEec
Q 044932 654 LDPLEGILRSLHWEI-RM-TYAQDKEGILCAQKT 685 (689)
Q Consensus 654 l~~v~~i~~~lrW~~-~~-~~~~~~E~iL~~~K~ 685 (689)
-..|+.++....|.. .+ .|..+.++++++++.
T Consensus 386 ~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~ 419 (423)
T PRK14966 386 GAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEh
Confidence 678888887777753 33 366778999998753
No 331
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=85.26 E-value=9.8 Score=40.42 Aligned_cols=97 Identities=27% Similarity=0.294 Sum_probs=55.2
Q ss_pred CCeEEEECCccchhH--HHhh-cCCeEEEEcCCcccHHHHHHHHHHc--------CCCcEEe--cCCC-----CCCCCCC
Q 044932 309 IRVVLEIGSADLSFV--ASLL-AKEVLTLTVGLKDDLVDLAQVALER--------GFPAVVS--PLGN-----RRLPFPS 370 (689)
Q Consensus 309 ~R~VLDVGCGtGsfa--a~La-~~~V~gmDIsp~D~seamlq~A~eR--------GL~~i~~--~~dt-----~~LPFpD 370 (689)
..+||.+|.|+|-.+ +++. ...|...|+... ...++..... |...... ..+. ..+|.+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~---~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~- 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV---VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP- 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh---HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc-
Confidence 568999999999543 3332 334554454332 1222332221 2222222 1111 122222
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|+++.|.++ ....+.++.=|.-.|-.+|.+++..+-
T Consensus 163 --~DlilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 163 --FDLILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred --ccEEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 999999988765 445667888888888899966666654
No 332
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=85.20 E-value=5.6 Score=44.73 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=89.1
Q ss_pred cCCCCcccchhH-HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc
Q 044932 278 FPQNQSEFKGGV-LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 278 Fpgggt~F~~ga-~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR 352 (689)
|-.|+-+|...- ..|.+.|- .|.+..-.+.++||=+|-|.|.-+..|++. .|+-+|++|. |++++...
T Consensus 260 YldG~LQfsTrDe~RYhEsLV--~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~-----miela~~~ 332 (508)
T COG4262 260 YLDGGLQFSTRDEYRYHESLV--YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPR-----MIELASHA 332 (508)
T ss_pred EEcCceeeeechhhhhhheee--ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHH-----HHHHhhhh
Confidence 444455665443 25655442 233332125789999999999777778765 3788898874 56665521
Q ss_pred ----CC------CcEEecCCCCCCC---CCCCCcceEEeccccccccc-----cHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 353 ----GF------PAVVSPLGNRRLP---FPSGVFDAIHCDGCSITWHA-----HGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 353 ----GL------~~i~~~~dt~~LP---FpD~SFDlVhcs~cli~W~~-----d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
.+ ...+.+....... =....||.|+.-.-- +-.+ .-..+..-+.|-|+++|.+++.....+
T Consensus 333 ~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~D-P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 333 TVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPD-PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred hHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCC-CCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 11 0111111111111 124589998753100 0000 012455667788999999999875543
Q ss_pred hh---HHHHHHHHHHhcceeEEEe--eccccCceeEEEEEe
Q 044932 415 IE---EEEALTTLTASICWNILAH--KTDEISEMGVKIYQK 450 (689)
Q Consensus 415 le---~~~~ie~La~~l~W~~v~~--~~~~~g~~~i~IwqK 450 (689)
.. -|. +..-.++.++...-. ..-++|+-+..++.+
T Consensus 412 ~tp~vfw~-i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 412 FTPRVFWR-IDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred cCCceeee-ehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 31 111 344556666655322 123567777776665
No 333
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=85.14 E-value=0.38 Score=47.44 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=51.2
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccchhhccccCCCCCC-CccchhhccccccccccCCcC
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESFGTY-PRSYDLLHADHLFSRLKSRCR 626 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f~ty-prTyDLlHa~~lfs~~~~~c~ 626 (689)
+|+|+++|.|.++.+|....-. +++-++. +..+.....+|+--+..|..+.++.+ +++||+|-+.+.|....+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~-- 91 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP-- 91 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH--
Confidence 6999999999999999654211 1222222 22233333455322233433334323 5799999999888765432
Q ss_pred CccceeeeeccccccCcEEEEe
Q 044932 627 QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 627 ~~~~illEmDRILRP~G~~iir 648 (689)
..+|-||-|+ +|.+|+.
T Consensus 92 --~~~l~e~~r~---~~~~ii~ 108 (194)
T TIGR02081 92 --EEILDEMLRV---GRHAIVS 108 (194)
T ss_pred --HHHHHHHHHh---CCeEEEE
Confidence 3345555554 5555443
No 334
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=84.20 E-value=0.96 Score=48.77 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=60.3
Q ss_pred eEEeecCCcchhH--HHHhcc-CCceEEEeccCCCCCchhhhhccccchhhc-cccCCCCCCCccchhhccccccccccC
Q 044932 548 RNVMDMKSIYGGF--AAALAQ-QKIWVMNVVPVHAPDTLPVIYDRGLVGIYH-DWCESFGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 548 RNvmDMna~~GgF--AAal~~-~~vWVMNvvp~~~~~tL~vI~~RGLig~yh-dwce~f~typrTyDLlHa~~lfs~~~~ 623 (689)
..|||+++|+|=. |||+.. ..|.-.-.=|..-.++.--+..-|+-.-.. ...+.+. -..||||=|+=+...+
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~--~~~~dlvvANI~~~vL-- 238 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLV--EGKFDLVVANILADVL-- 238 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTC--CS-EEEEEEES-HHHH--
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccc--cccCCEEEECCCHHHH--
Confidence 3799999999954 444433 333321111111011111222223222110 0122222 2889999887666654
Q ss_pred CcCCccceeeeeccccccCcEEEEeCchh-hHHHHHHHHhhcceeEEEeecCCCceEEEEEec
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRDKVE-ILDPLEGILRSLHWEIRMTYAQDKEGILCAQKT 685 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD~~~-~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K~ 685 (689)
..++=.+.+.|+|||++|+.--.. -...|....+. .|...-...++.=--|+++|+
T Consensus 239 -----~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 239 -----LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp -----HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred -----HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 345667899999999999983221 12333333344 555433222222234555553
No 335
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=83.70 E-value=0.73 Score=49.23 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=61.8
Q ss_pred eeEEeecCCcchhHHHHhccCCceE------EEeccCC-CCCchhhhhccccchhh-cc----c-c---CCCCCCCccch
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWV------MNVVPVH-APDTLPVIYDRGLVGIY-HD----W-C---ESFGTYPRSYD 610 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWV------MNvvp~~-~~~tL~vI~~RGLig~y-hd----w-c---e~f~typrTyD 610 (689)
-=+++||.+|+|-.|-.+.+. |-- -||+-.+ .|+-|.+--.|-.-+-| -+ | | |.+|+-..+||
T Consensus 101 ~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 367999999999877777532 100 1222232 24677766665533222 22 2 3 78897888999
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.-..+-. ..|.=+.-.|=|+-|+|.|||.+.+=+
T Consensus 180 ~yTiafGI----RN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 180 AYTIAFGI----RNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eEEEecce----ecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 86544322 334334668999999999999876554
No 336
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=83.19 E-value=0.86 Score=51.01 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=64.2
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-----Cchhhhhccccchh---hccc---cCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-----DTLPVIYDRGLVGI---YHDW---CESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-----~tL~vI~~RGLig~---yhdw---ce~f~typrTyDLlHa~ 615 (689)
..++|+++|.|.|+.+|... |-+ |++=++-. ..+.-+..+||=.+ ..|. .+.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 46999999999999999754 211 33333321 11223334443221 1121 22332 5789999865
Q ss_pred ccccccc---CCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhh
Q 044932 616 HLFSRLK---SRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRS 663 (689)
Q Consensus 616 ~lfs~~~---~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~ 663 (689)
.- ..|. +|=-....+|-|+=|+|+|||.+.|+ |..++...+...+..
T Consensus 200 FP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 200 FP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 21 2232 11111256789999999999999987 666666665555543
No 337
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=83.10 E-value=3.7 Score=42.93 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=26.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGL 338 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp 338 (689)
....|||+|.|+|.++..|++. .|+++++++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~ 62 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDP 62 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcH
Confidence 4579999999999999999864 599999876
No 338
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=82.89 E-value=1.3 Score=44.09 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=23.9
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCc
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLK 339 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~ 339 (689)
++|||+.||.|+.+.+++.. .|+++|++|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~ 32 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPE 32 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHH
Confidence 37999999999999888875 5999999874
No 339
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=82.56 E-value=4.4 Score=45.40 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=64.1
Q ss_pred cCCCCCCeEEEECCccchhHH--HhhcCC-----------------------------------------eEEEEcCCcc
Q 044932 304 EWGKNIRVVLEIGSADLSFVA--SLLAKE-----------------------------------------VLTLTVGLKD 340 (689)
Q Consensus 304 ~~G~~~R~VLDVGCGtGsfaa--~La~~~-----------------------------------------V~gmDIsp~D 340 (689)
.|. ....++|==||+|.++. +|+..+ ++|+|+++..
T Consensus 188 gw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 188 GWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred CCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 454 34689999999999863 344321 5699998752
Q ss_pred cHHHHHHHHHHcCCCcE--EecCCCCCCCCCCCCcceEEecc---ccccccccHH----HHHHHHHhccCCCcEEEEEcC
Q 044932 341 DLVDLAQVALERGFPAV--VSPLGNRRLPFPSGVFDAIHCDG---CSITWHAHGG----KLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 341 ~seamlq~A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhcs~---cli~W~~d~~----~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ +.+..-|+..|+... +.+.+...|+=+-..+|+|+|.- -.+.=....+ .+...+.|+++--++++|++.
T Consensus 267 i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 267 I-EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred H-HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2 222233344476633 44666666642227999999862 1111001111 344566678888888888887
Q ss_pred CCc
Q 044932 412 HDS 414 (689)
Q Consensus 412 ~~~ 414 (689)
...
T Consensus 346 e~~ 348 (381)
T COG0116 346 EDL 348 (381)
T ss_pred HHH
Confidence 643
No 340
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.94 E-value=7.9 Score=40.44 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=65.3
Q ss_pred CCCeEEEECCccchhHHHhh---cCC-eEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCC--C--CCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLL---AKE-VLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLP--F--PSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~~-V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LP--F--pD~SFDlVhc 378 (689)
.+.+||=+|+-+|.-..... +.+ ++++.++|... ...+..|.+| ++..++..+ +.| | --...|+|.+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~Ni~PIL~DA---~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRPNIIPILEDA---RKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCCCceeeeccc---CCcHHhhhhcccccEEEE
Confidence 45789999999997666554 444 89999999754 5678888887 444444433 333 1 1245888875
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
- ...+ .....+...+..-||+||+++++..
T Consensus 152 D-VAQp--~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 152 D-VAQP--NQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred e-cCCc--hHHHHHHHHHHHhcccCCeEEEEEE
Confidence 3 1111 1234567788999999998888753
No 341
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=81.77 E-value=11 Score=42.31 Aligned_cols=118 Identities=26% Similarity=0.293 Sum_probs=65.7
Q ss_pred HHHHHHHhhcccccCC-CCCCeEEEECCccchhHHHhhc----C----CeEEEEcCCcccHHHHHHHHHHcCCCcE--Ee
Q 044932 291 HYLESIEEMVPDIEWG-KNIRVVLEIGSADLSFVASLLA----K----EVLTLTVGLKDDLVDLAQVALERGFPAV--VS 359 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G-~~~R~VLDVGCGtGsfaa~La~----~----~V~gmDIsp~D~seamlq~A~eRGL~~i--~~ 359 (689)
.|...-.+|+|.+.-+ .+..+||||.+-.|+=++.|++ . .|++=|+++. ...|+.....|--... +.
T Consensus 137 i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~--R~~~L~~q~~~l~~~~~~v~ 214 (375)
T KOG2198|consen 137 IYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPK--RLNMLVHQLKRLPSPNLLVT 214 (375)
T ss_pred chhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHH--HHHHHHHHHhccCCcceeee
Confidence 3444555677743211 1457899999999987766654 2 3566677653 2345555554421111 11
Q ss_pred -----cCCCCCC----CCCCCCcceEEec-ccc-----------cc--cccc--------HHHHHHHHHhccCCCcEEEE
Q 044932 360 -----PLGNRRL----PFPSGVFDAIHCD-GCS-----------IT--WHAH--------GGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 360 -----~~dt~~L----PFpD~SFDlVhcs-~cl-----------i~--W~~d--------~~~aL~EI~RVLRPGG~fVI 408 (689)
.+....+ ++.--.||-|.|- -|. .. |... --.+|.--.|.||+||.++.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111111 2444579999862 111 11 1110 12467778899999999999
Q ss_pred Ec
Q 044932 409 ST 410 (689)
Q Consensus 409 sd 410 (689)
|+
T Consensus 295 ST 296 (375)
T KOG2198|consen 295 ST 296 (375)
T ss_pred ec
Confidence 97
No 342
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=81.21 E-value=1.8 Score=42.30 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=31.7
Q ss_pred cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcc-eeEEEeeccccCceeEEEEEeC
Q 044932 388 HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASIC-WNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 388 d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~-W~~v~~~~~~~g~~~i~IwqKp 451 (689)
-....|.|+.|||||||.++|......... ..+..+.+.++ |.... ..+|.|+
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~----------~iiW~K~ 87 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDDREIAG-FLFELALEIFGGFFLRN----------EIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-CCEECT-HHHHHHHHHHTT-EEEE----------EEEEE-S
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecchhhhH-HHHHHHHHHhhhhheec----------cceeEec
Confidence 345789999999999999999866543321 01233444445 65432 3677776
No 343
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=80.29 E-value=2.1 Score=44.90 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=50.3
Q ss_pred CeeEEeecCCcchhHHHHhccCC-ceEEEeccCCC-CCchhhhhccccchh------------h-ccccCCCCCCCccch
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA-PDTLPVIYDRGLVGI------------Y-HDWCESFGTYPRSYD 610 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~-~~tL~vI~~RGLig~------------y-hdwce~f~typrTyD 610 (689)
.-++|+++++|.|+++..+...+ +- +|+-++. ++.+... |-.++. . .|--+-+...+++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~--~v~~veid~~vi~~a--~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVE--KATLVDIDEKVIELS--KKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcc--eEEEEeCCHHHHHHH--HHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 34589999999999998776553 32 2222221 1111111 111111 1 111111123478999
Q ss_pred hhccccccccccCCcCC-ccceeeeeccccccCcEEEEe
Q 044932 611 LLHADHLFSRLKSRCRQ-PVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~-~~~illEmDRILRP~G~~iir 648 (689)
+|=++.... ....-.+ ....+-.+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 986654321 1111110 022344677999999999987
No 344
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=80.18 E-value=7.9 Score=42.13 Aligned_cols=98 Identities=14% Similarity=-0.005 Sum_probs=56.5
Q ss_pred CCeEEEECCcc-chhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCC----CCC-CC-CCCCcceE
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KE-VLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGN----RRL-PF-PSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~-V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt----~~L-PF-pD~SFDlV 376 (689)
..+||.+|||. |.++..++. .. |++++.+ +.+++.+.+. +.. .+..... ..+ .+ ..+.+|+|
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~-----~~~~~~~~~~~~~~-vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRV-----PERLEMARSHLGAE-TINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHcCCcE-EEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 46899999987 666655553 22 6666544 3567777776 332 1111100 001 12 23469988
Q ss_pred Eecccc----c----------cccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 377 HCDGCS----I----------TWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 377 hcs~cl----i----------~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+..-.. . .-..+....+.++.|.|+|+|.+++....
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCC
Confidence 743100 0 00123456899999999999999988643
No 345
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=79.54 E-value=1.1 Score=44.70 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=56.2
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----ccccchhhccccCCCCCCCccchhhccccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
-.+|||+++|.|.|+.+|.....- |+-++. ++-+...- ..|+-...+-....++..+.+||+|-+.++|..+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 358999999999999999765422 333332 22222221 1222111111122255556889999998888654
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
... . +..++-++-|++.+++.+.+...
T Consensus 141 ~~~-~-~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 PQE-D-AARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred CHH-H-HHHHHHHHHhhcCCeEEEEECCc
Confidence 322 2 24566677777766665555443
No 346
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=79.50 E-value=0.79 Score=46.18 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=68.3
Q ss_pred EEeecCCcchhHHHHhccC-CceEEEeccCCCC-----CchhhhhccccchhhccccCCCCCC-----Cccchhhccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-----DTLPVIYDRGLVGIYHDWCESFGTY-----PRSYDLLHADHL 617 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-----~tL~vI~~RGLig~yhdwce~f~ty-----prTyDLlHa~~l 617 (689)
.++|+++|.|.|.++|... |= .|++=++-. ..+.-+..+||=.+..=.|.+.... |.+.|-||..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 7999999999999999642 21 134333321 2345566677766666556665422 3455555432
Q ss_pred cc-cc-----cCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhc
Q 044932 618 FS-RL-----KSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSL 664 (689)
Q Consensus 618 fs-~~-----~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~l 664 (689)
|. .| .+|.-+-...|-+|-|+|+|||.+.++ |..++...+...+...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 21 12 123333356788999999999999988 7777777777777664
No 347
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=79.41 E-value=2.6 Score=44.90 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchh----hhhcccc---ch
Q 044932 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLP----VIYDRGL---VG 593 (689)
Q Consensus 523 ~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~----vI~~RGL---ig 593 (689)
.||..+-..+.. ... .. .. +|+||++|.|-.|.+|... +.| +|+-++- |.-|- -+-.-|| +-
T Consensus 94 ~dTe~Lve~~l~-~~~---~~-~~--~ilDlGTGSG~iai~la~~~~~~--~V~a~Dis~~Al~~A~~Na~~~~l~~~~~ 164 (280)
T COG2890 94 PDTELLVEAALA-LLL---QL-DK--RILDLGTGSGAIAIALAKEGPDA--EVIAVDISPDALALARENAERNGLVRVLV 164 (280)
T ss_pred CchHHHHHHHHH-hhh---hc-CC--cEEEecCChHHHHHHHHhhCcCC--eEEEEECCHHHHHHHHHHHHHcCCccEEE
Confidence 678888777641 111 11 11 8999999999999999754 332 4555543 22221 1233343 22
Q ss_pred hhccccCCCCCCCccchhhcccc----------------------ccccccCCcCCccceeeeeccccccCcEEEEeCch
Q 044932 594 IYHDWCESFGTYPRSYDLLHADH----------------------LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV 651 (689)
Q Consensus 594 ~yhdwce~f~typrTyDLlHa~~----------------------lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~ 651 (689)
+..||=+. .+-+||||=++= ||+.- +.=.+...|+-+..++|.|||++++.-..
T Consensus 165 ~~~dlf~~---~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~-dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 165 VQSDLFEP---LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG-DGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred Eeeecccc---cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCc-cHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 33355444 444888864431 22211 11112356788899999999999999887
Q ss_pred hhHHHHHHHHhhcce-e-E-EEeecCCCceEEEEEe
Q 044932 652 EILDPLEGILRSLHW-E-I-RMTYAQDKEGILCAQK 684 (689)
Q Consensus 652 ~~l~~v~~i~~~lrW-~-~-~~~~~~~~E~iL~~~K 684 (689)
.-...|+.+.....+ . + ...+-.+.+.++++++
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 778888888877774 2 2 2224445566666654
No 348
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=79.30 E-value=1.3 Score=47.76 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=58.9
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchh----hhhccccch--hhccccCCCCCCCccchhhcccccccc-
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLP----VIYDRGLVG--IYHDWCESFGTYPRSYDLLHADHLFSR- 620 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~----vI~~RGLig--~yhdwce~f~typrTyDLlHa~~lfs~- 620 (689)
.|+|..+|.|+|+.++..... +|+=++.. ..+. -+-.-|+-. +++.=...++..+.+||+|=++--|..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 699999999999654433221 23333321 1111 111123332 222112233433568899887633322
Q ss_pred --ccC-Cc-CCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcce
Q 044932 621 --LKS-RC-RQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHW 666 (689)
Q Consensus 621 --~~~-~c-~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW 666 (689)
... .. .+...+|-++-|+|+|||++++--... ..++.++..-.|
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 111 11 113578889999999999876543221 134455666666
No 349
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=79.28 E-value=4.8 Score=43.77 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=44.1
Q ss_pred eeecCCCCc--ccchhHHHHHHHHHhhcccccCC-CCCCeEEEECCccch----hHHHhhcCCeEEEEcCCcccHHHHHH
Q 044932 275 YLTFPQNQS--EFKGGVLHYLESIEEMVPDIEWG-KNIRVVLEIGSADLS----FVASLLAKEVLTLTVGLKDDLVDLAQ 347 (689)
Q Consensus 275 ~~~Fpgggt--~F~~ga~~Yid~L~~~Lp~l~~G-~~~R~VLDVGCGtGs----faa~La~~~V~gmDIsp~D~seamlq 347 (689)
.|.+|.+.- .-+ +.-.|+..|..+|.....+ ...-++||||||.-- +|+.+.+-.++|.||++.....+ .+
T Consensus 67 ~wdiP~~~LcP~iP-~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A-~~ 144 (299)
T PF05971_consen 67 VWDIPEGRLCPPIP-NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESA-RE 144 (299)
T ss_dssp -----TTS----HH-HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHH-HH
T ss_pred cccCCCCCcCCCCc-hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHH-HH
Confidence 455665531 112 2347777777776532111 013579999999874 34555455789999987533222 22
Q ss_pred HHHHc-CCCcEEe---cCCCCC----CCCCCCCcceEEeccccccccccHHHHH
Q 044932 348 VALER-GFPAVVS---PLGNRR----LPFPSGVFDAIHCDGCSITWHAHGGKLL 393 (689)
Q Consensus 348 ~A~eR-GL~~i~~---~~dt~~----LPFpD~SFDlVhcs~cli~W~~d~~~aL 393 (689)
.+... ++...+. +-+... +-.++..||+.+|.- +++...+.+.
T Consensus 145 nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNP---PFy~s~~e~~ 195 (299)
T PF05971_consen 145 NVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNP---PFYSSQEEAE 195 (299)
T ss_dssp HHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE--------SS-----
T ss_pred HHHhccccccceEEEEcCCccccchhhhcccceeeEEecCC---ccccChhhhc
Confidence 22233 4443221 111111 223456899998853 4444443443
No 350
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=78.23 E-value=9.6 Score=39.49 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCeEEEECCc-cchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCC---C-CCCCCCCcceEEecc
Q 044932 309 IRVVLEIGSA-DLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNR---R-LPFPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCG-tGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~---~-LPFpD~SFDlVhcs~ 380 (689)
..+||..||| .|.++..++.. .|++++.+ +...+.+.+.|+...+...... . ...+.+.+|+|+...
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIK-----EEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 4577888876 35666555542 35555433 3456667666764433211100 0 012456799887431
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. ....+.++.|.|+++|.++....
T Consensus 241 g-------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 G-------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEECC
Confidence 1 12578899999999999998753
No 351
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=77.31 E-value=25 Score=34.84 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=67.9
Q ss_pred ECCccchhHHHhhcC-----CeEEEEcCCcccH-------HHHHHHHHHcCCCcEEecCCCCCCC----CCCCCcceEEe
Q 044932 315 IGSADLSFVASLLAK-----EVLTLTVGLKDDL-------VDLAQVALERGFPAVVSPLGNRRLP----FPSGVFDAIHC 378 (689)
Q Consensus 315 VGCGtGsfaa~La~~-----~V~gmDIsp~D~s-------eamlq~A~eRGL~~i~~~~dt~~LP----FpD~SFDlVhc 378 (689)
||=|.=+|+.+|+.. .+++..++..+.. ...++...+.|+...+ ..|+..|. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEE
Confidence 344444677777743 4677776554211 1233444455665443 34554443 46789999985
Q ss_pred ccccccccc---------------cHHHHHHHHHhccCCCcEEEEEcCCCc-hhHHHHHHHHHHhcceeEEE
Q 044932 379 DGCSITWHA---------------HGGKLLLEMNRILRPSGYFILSTKHDS-IEEEEALTTLTASICWNILA 434 (689)
Q Consensus 379 s~cli~W~~---------------d~~~aL~EI~RVLRPGG~fVIsdp~~~-le~~~~ie~La~~l~W~~v~ 434 (689)
.+ |+.. -...+|.-..++|+++|.+.|+-.... ...|+ |+.+++..++.+..
T Consensus 82 NF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~-i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN-IEELAAEAGLVLVR 149 (166)
T ss_pred eC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc-HHHHHHhcCCEEEE
Confidence 42 1111 113567788899999999999864321 13444 67888887776543
No 352
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=77.31 E-value=1.2 Score=45.85 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=41.7
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCch-----------------hhHHHHHHHHh----hc
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-----------------EILDPLEGILR----SL 664 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~-----------------~~l~~v~~i~~----~l 664 (689)
..+||+|-.++--..|. .++-++=|.|||||.+++++.. .+...++++.. .=
T Consensus 142 ~~~fD~VfiDa~k~~y~-------~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~ 214 (234)
T PLN02781 142 KPEFDFAFVDADKPNYV-------HFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDP 214 (234)
T ss_pred CCCCCEEEECCCHHHHH-------HHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCC
Confidence 35899987765433332 2334456899999999986421 02233444333 33
Q ss_pred ceeEEEeecCCCceEEEEEec
Q 044932 665 HWEIRMTYAQDKEGILCAQKT 685 (689)
Q Consensus 665 rW~~~~~~~~~~E~iL~~~K~ 685 (689)
+|.+.+.- -.+++++++|.
T Consensus 215 ~~~~~~lp--~gdG~~i~~k~ 233 (234)
T PLN02781 215 RVEISQIS--IGDGVTLCRRL 233 (234)
T ss_pred CeEEEEEE--eCCccEEEEEe
Confidence 56555542 24689999885
No 353
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=76.92 E-value=6.8 Score=41.71 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH-cCCCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE-RGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e-RGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||||||.=-++.-.... .+++.||+...+ +.+..+.. -+.+......|...-+ +....|+++..- .
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v--e~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK-~ 180 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV--EFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLK-T 180 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH--HHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH--HHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHH-H
Confidence 4689999999999888765543 488999986422 33333322 3555555544432222 347899987642 2
Q ss_pred cccc--ccHHHHHHHHHhccCCCcEEEEEcCCCch--------h-HHHHHHHHHHhcceeE
Q 044932 383 ITWH--AHGGKLLLEMNRILRPSGYFILSTKHDSI--------E-EEEALTTLTASICWNI 432 (689)
Q Consensus 383 i~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~~~l--------e-~~~~ie~La~~l~W~~ 432 (689)
+|-. ...+..+.=+.++= .=+++||.|...+ . ....++.++..-+|..
T Consensus 181 lp~le~q~~g~g~~ll~~~~--~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALR--SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSC--ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHhcchHHHHHHHhC--CCeEEEeccccccccCccccccCHHHHHHHhcccCCcee
Confidence 2211 12233333333332 2367778764222 1 1346888888888974
No 354
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.83 E-value=8.2 Score=42.06 Aligned_cols=89 Identities=19% Similarity=0.186 Sum_probs=55.5
Q ss_pred eEEEECCcc-chhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC-----CCCCC-CCcceEE-e
Q 044932 311 VVLEIGSAD-LSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR-----LPFPS-GVFDAIH-C 378 (689)
Q Consensus 311 ~VLDVGCGt-Gsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~-----LPFpD-~SFDlVh-c 378 (689)
+|+=+|||+ |.++..++. ..|+++|.++ ..+++|++.+-...+....... +-... .-||+++ |
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-----~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-----ERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-----HHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 899999996 544444443 2477887764 6788888854222111110000 01112 3699987 4
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+. .. .++..+.+++||||.+++....
T Consensus 246 ~G--~~------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 246 VG--SP------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CC--CH------HHHHHHHHHhcCCCEEEEEecc
Confidence 43 22 5899999999999999987644
No 355
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=76.12 E-value=1.2 Score=47.53 Aligned_cols=90 Identities=20% Similarity=0.486 Sum_probs=62.4
Q ss_pred CeeEEeecCCcchhHHHHhcc--CCceEEEeccCCCCCc-hhhhhccccchh-hccccCCCCCCCccchhhccccccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHAPDT-LPVIYDRGLVGI-YHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~--~~vWVMNvvp~~~~~t-L~vI~~RGLig~-yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
+..+++|.+||=|+--+.|.. +.|. -+.+.-+ ---...||+-=+ ..+|-+. +..||+|-+-.|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~-----aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL--- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVY-----ATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL--- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEE-----eecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh---
Confidence 567899999999999999964 3332 2222111 123446775321 2335432 5679999887776
Q ss_pred cCCcCCccceeeeeccccccCcEEEEe
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+||.-...+|-+|-+.|+|+|.+||-
T Consensus 162 -DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 57887778899999999999999986
No 356
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=75.80 E-value=1.1 Score=43.50 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=63.2
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchh----hhhcccc---chhhccccCCCCCCCccchhhcccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLP----VIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~----vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
-.+|+|+++|+|-.+.+|... +-+-+-.+-++ ++.+. -+-.-|+ --+.+|+.+.+. +..||+|=++-=|
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~-~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDIN-PDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPPF 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESB-HHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---S
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCC-HHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccch
Confidence 345999999999888887653 22211122222 12221 1222232 233457766665 6899998776543
Q ss_pred ccccC-CcCCccceeeeeccccccCcEE--EEeCchhhHHHHHHHHhhcceeEEEe
Q 044932 619 SRLKS-RCRQPVSIVVEMDRILRPGGWA--IVRDKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 619 s~~~~-~c~~~~~illEmDRILRP~G~~--iirD~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
..-.. .-.++..++-+-=++|+|||.+ ++.....+-..++++.. ++.+.
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~----~~~~~ 160 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG----DVEVV 160 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS------EEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC----CEEEE
Confidence 32221 1112467788889999999977 45555444444444433 55554
No 357
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=75.77 E-value=1.5 Score=44.03 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=61.2
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccc----c---chhhccccCCCCCCCccchhhcccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRG----L---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RG----L---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
-..|+|+++|.|.|+..|..... .|+=++. ++.+.....|. + +... +..+...|.+||+|=+..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~---~~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFE---VNDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEE---ECChhhCCCCcCEEEEhhHH
Confidence 46799999999999999987642 2444443 23443333331 1 1111 22223335889998777776
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeCchhhH
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEIL 654 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l 654 (689)
..+. ... +..++-+|.|+++|++++.+-......
T Consensus 130 ~~~~-~~~-~~~~l~~i~~~~~~~~~i~~~~~~~~~ 163 (219)
T TIGR02021 130 IHYP-ASD-MAKALGHLASLTKERVIFTFAPKTAWL 163 (219)
T ss_pred HhCC-HHH-HHHHHHHHHHHhCCCEEEEECCCchHH
Confidence 5543 233 256788999999988888776544333
No 358
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=75.65 E-value=35 Score=37.39 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=75.9
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccCC---ceEEEeccCCC---CCchhhhhccccch--hhc-cccCCCCCCC
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQK---IWVMNVVPVHA---PDTLPVIYDRGLVG--IYH-DWCESFGTYP 606 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~---vWVMNvvp~~~---~~tL~vI~~RGLig--~yh-dwce~f~typ 606 (689)
++..|....+. +|+|.++|||-.++.|.... -+.|==+...| . . .-+.+-|+=+ +|+ |-+++- .
T Consensus 150 Ll~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a-r-~Nl~~N~~~~~~v~~s~~~~~v---~ 222 (300)
T COG2813 150 LLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA-R-KNLAANGVENTEVWASNLYEPV---E 222 (300)
T ss_pred HHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH-H-HhHHHcCCCccEEEEecccccc---c
Confidence 34445444444 89999999999999997643 23332111111 1 0 1133334444 232 334433 3
Q ss_pred ccchhhccccccccccCCcC-CccceeeeeccccccCcEEEEeCc--hhhHHHHHHHHhhcceeEEEeecCCCceEEEEE
Q 044932 607 RSYDLLHADHLFSRLKSRCR-QPVSIVVEMDRILRPGGWAIVRDK--VEILDPLEGILRSLHWEIRMTYAQDKEGILCAQ 683 (689)
Q Consensus 607 rTyDLlHa~~lfs~~~~~c~-~~~~illEmDRILRP~G~~iirD~--~~~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~ 683 (689)
..||+|=++==|-.-+.--. +-.-|+-+==+-|++||-+||==+ ..+-.+++++-. ++++.....+=+||-++
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~ 298 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAK 298 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEe
Confidence 38898776666653322111 001345556678999998776533 334444444433 66666555667788877
Q ss_pred ec
Q 044932 684 KT 685 (689)
Q Consensus 684 K~ 685 (689)
|.
T Consensus 299 k~ 300 (300)
T COG2813 299 KA 300 (300)
T ss_pred cC
Confidence 73
No 359
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.99 E-value=13 Score=39.51 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=52.3
Q ss_pred CCeEEEECCc-cchhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecC--CCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSA-DLSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPL--GNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCG-tGsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~--dt~~LPFpD~SFDlVhcs~c 381 (689)
..+||=+||| .|.++..++. . .|++++.++ ..+++|.+.|....+..- +...+.-..+.||+|+-.--
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP-----RSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH-----HHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 4678888875 2223333432 2 366676553 567788887765433211 11111111235898874311
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
....+....++|||||.+++...
T Consensus 245 -------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 11467888999999999998764
No 360
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=72.97 E-value=2.6 Score=42.47 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=29.6
Q ss_pred CCcceEEecccccccc-----------ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 371 GVFDAIHCDGCSITWH-----------AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~-----------~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++||.+.|. +.+... .-+..++.++.|+|||||.|+++.|-
T Consensus 62 ~~fD~~as~-~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 62 GSFDFAASF-SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred ccchhhhee-chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 789988664 222211 01247899999999999999999875
No 361
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=72.86 E-value=3.2 Score=34.42 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=55.7
Q ss_pred EeecCCcchh--HHHHhccCCceEEEeccCCCCCchhhhhc----ccc---chhhccccC-CCCCCC-ccchhhcccccc
Q 044932 550 VMDMKSIYGG--FAAALAQQKIWVMNVVPVHAPDTLPVIYD----RGL---VGIYHDWCE-SFGTYP-RSYDLLHADHLF 618 (689)
Q Consensus 550 vmDMna~~Gg--FAAal~~~~vWVMNvvp~~~~~tL~vI~~----RGL---ig~yhdwce-~f~typ-rTyDLlHa~~lf 618 (689)
++|..+|.|. +.+.+......|.. +.... ..+..... .++ -.+..+... .++.-+ .++|++ .....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~-~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG-VDLSP-EMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE-EeCCH-HHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 9999999998 56666655434433 11111 11221111 111 223333333 234333 489998 65555
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeCchh
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE 652 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD~~~ 652 (689)
..+.. ...++-++-|+|+|+|.+++.+...
T Consensus 129 ~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLP----PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44433 2678999999999999999986553
No 362
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=72.16 E-value=3.2 Score=46.42 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=61.3
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhh---c-cccchhh--ccccCCC--CC--CCc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIY---D-RGLVGIY--HDWCESF--GT--YPR 607 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~---~-RGLig~y--hdwce~f--~t--ypr 607 (689)
|....+ ..|+||.||.||+++.|... +- -.|+-++- +..|..+- . .|+--.. ++ ...+ +. -+.
T Consensus 234 L~~~~g--~~VLDlcag~G~kt~~la~~~~~--~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~ 308 (426)
T TIGR00563 234 LAPQNE--ETILDACAAPGGKTTHILELAPQ--AQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENE 308 (426)
T ss_pred hCCCCC--CeEEEeCCCccHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-ccccccccccccc
Confidence 344444 47999999999999887642 10 01333332 23332221 1 2331001 11 1111 11 246
Q ss_pred cchhhccc------cccccccCC------------cCCccceeeeeccccccCcEEEEe-------CchhhHHHHHH
Q 044932 608 SYDLLHAD------HLFSRLKSR------------CRQPVSIVVEMDRILRPGGWAIVR-------DKVEILDPLEG 659 (689)
Q Consensus 608 TyDLlHa~------~lfs~~~~~------------c~~~~~illEmDRILRP~G~~iir-------D~~~~l~~v~~ 659 (689)
+||.|-.+ |+|..-.+- ..+-..||-++=|+|||||.+++. ++.++|..+-+
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 79998754 444321110 000135788889999999999987 56666665543
No 363
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=70.97 E-value=1.2 Score=45.25 Aligned_cols=93 Identities=26% Similarity=0.400 Sum_probs=59.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC----Cchhhh-hccccc--hhhccccCCCCCCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP----DTLPVI-YDRGLV--GIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~----~tL~vI-~~RGLi--g~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
-++|+.+|-|-=|..|..+..= |.-++.. ..|.-+ -.+||= ....|..+ + .+|..||+|-+..+|-.+
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~-~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-F-DFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-B-S-TTTEEEEEEESSGGGS
T ss_pred cEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-c-cccCCcCEEEEEEEeccC
Confidence 5899999999999999888753 3333322 223333 345553 22333322 3 368899999988777654
Q ss_pred cCCcCCccceeeeeccccccCcEEEEe
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
. +-. +..|+--|-.-|+|||+++|-
T Consensus 108 ~-~~~-~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 108 Q-REL-RPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp --GGG-HHHHHHHHHHTEEEEEEEEEE
T ss_pred C-HHH-HHHHHHHHHhhcCCcEEEEEE
Confidence 4 334 367888899999999998883
No 364
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=70.72 E-value=12 Score=40.88 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=34.1
Q ss_pred CCCeEEEECCccchhHHHhhc------------C--------CeEEEEcCCcccHHHH--HH----HHHHcCCCcEEecC
Q 044932 308 NIRVVLEIGSADLSFVASLLA------------K--------EVLTLTVGLKDDLVDL--AQ----VALERGFPAVVSPL 361 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~------------~--------~V~gmDIsp~D~seam--lq----~A~eRGL~~i~~~~ 361 (689)
..-+|+|+||-.|..+..++. . .|.--|+-..|...-. +. .....+-....++.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 456899999999975543321 1 2444576555543111 11 11111111112222
Q ss_pred CC--CCCCCCCCCcceEEeccccccccc
Q 044932 362 GN--RRLPFPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 362 dt--~~LPFpD~SFDlVhcs~cli~W~~ 387 (689)
++ .+| ||++|.|++|++. .+||..
T Consensus 96 gSFy~rL-fP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 96 GSFYGRL-FPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp S-TTS---S-TT-EEEEEEES--TTB-S
T ss_pred chhhhcc-CCCCceEEEEEec-hhhhcc
Confidence 22 344 8999999999874 457763
No 365
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=70.11 E-value=37 Score=39.15 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=68.4
Q ss_pred CcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHH---Hhhc-----CCeEEEEcCCcccHHHHHHHHHH--
Q 044932 282 QSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVA---SLLA-----KEVLTLTVGLKDDLVDLAQVALE-- 351 (689)
Q Consensus 282 gt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa---~La~-----~~V~gmDIsp~D~seamlq~A~e-- 351 (689)
|..|+...- +..|.+++.. . ...+|+|-.||+|++.. .++. ....|.++.+. +...|.-
T Consensus 166 GEfyTP~~v--~~liv~~l~~-~---~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~-----t~~l~~mN~ 234 (489)
T COG0286 166 GEFYTPREV--SELIVELLDP-E---PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDT-----TYRLAKMNL 234 (489)
T ss_pred CccCChHHH--HHHHHHHcCC-C---CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHH-----HHHHHHHHH
Confidence 344444332 4556666542 2 34589999999998643 2222 23677777553 3333332
Q ss_pred --cCCCc--EEecCCCCCCCC-----CCCCcceEEecc--ccccccc----------------------cHHHHHHHHHh
Q 044932 352 --RGFPA--VVSPLGNRRLPF-----PSGVFDAIHCDG--CSITWHA----------------------HGGKLLLEMNR 398 (689)
Q Consensus 352 --RGL~~--i~~~~dt~~LPF-----pD~SFDlVhcs~--cli~W~~----------------------d~~~aL~EI~R 398 (689)
+|+.. .....++..-|. ....||.|++.. ....|.. .....+..+.+
T Consensus 235 ~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~ 314 (489)
T COG0286 235 ILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILY 314 (489)
T ss_pred HHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHH
Confidence 34442 222233322232 346799887641 1111211 11467899999
Q ss_pred ccCCCcEEEEEcCCCch
Q 044932 399 ILRPSGYFILSTKHDSI 415 (689)
Q Consensus 399 VLRPGG~fVIsdp~~~l 415 (689)
.|+|||+..|..++..+
T Consensus 315 ~l~~~g~aaivl~~gvl 331 (489)
T COG0286 315 KLKPGGRAAIVLPDGVL 331 (489)
T ss_pred hcCCCceEEEEecCCcC
Confidence 99999988888777654
No 366
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=69.39 E-value=1.4 Score=46.91 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=54.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc------c--cchhhccccCCCCCCCccc----h-hhc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR------G--LVGIYHDWCESFGTYPRSY----D-LLH 613 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R------G--Lig~yhdwce~f~typrTy----D-LlH 613 (689)
.+|+|+++|.|.++..|.+.-.=.-+|++++-. .-|.....+ + ..++-.|-++.++ +|..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEEE
Confidence 469999999999988886541001347777754 344333322 1 1223334444332 23333 2 333
Q ss_pred cccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 614 a~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
....|.... .-. ...+|-+|=+.|+|||.++|.
T Consensus 144 ~gs~~~~~~-~~e-~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEE-AVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHH-HHHHHHHHHHhcCCCCEEEEe
Confidence 333333332 222 245788999999999999974
No 367
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=68.33 E-value=9.7 Score=40.25 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=58.3
Q ss_pred eEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCC--CCCcceEEecc-c---
Q 044932 311 VVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFP--SGVFDAIHCDG-C--- 381 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFp--D~SFDlVhcs~-c--- 381 (689)
+|||+-||.|++...|...+ |+++|+++. +++. ++++.+......|...+.-. ...+|+|+++. |
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~-----a~~~-~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKS-----AAET-YEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHH-----HHHH-HHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 58999999999866555443 677888762 2332 33333322222333333211 25699998642 1
Q ss_pred cc----ccccc-HHHHHHHHH---hccCCCcEEEEEcCCCch-----hHHHHHHHHHHhcceeEE
Q 044932 382 SI----TWHAH-GGKLLLEMN---RILRPSGYFILSTKHDSI-----EEEEALTTLTASICWNIL 433 (689)
Q Consensus 382 li----~W~~d-~~~aL~EI~---RVLRPGG~fVIsdp~~~l-----e~~~~ie~La~~l~W~~v 433 (689)
+. ....+ ...++.++. +.++|- +|++--.+.++ .....+...++.+++...
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~ 139 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVY 139 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEE
Confidence 11 00112 223444444 445665 44443333322 123456666777777653
No 368
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=68.29 E-value=13 Score=39.61 Aligned_cols=123 Identities=13% Similarity=0.207 Sum_probs=59.8
Q ss_pred ceeecCCCC--cccchhHHHHHHHHHhhcccccCC---CCCCeEEEECCccch----hHHHhhcCCeEEEEcCCcccHHH
Q 044932 274 EYLTFPQNQ--SEFKGGVLHYLESIEEMVPDIEWG---KNIRVVLEIGSADLS----FVASLLAKEVLTLTVGLKDDLVD 344 (689)
Q Consensus 274 ~~~~Fpggg--t~F~~ga~~Yid~L~~~Lp~l~~G---~~~R~VLDVGCGtGs----faa~La~~~V~gmDIsp~D~sea 344 (689)
.+|.||.+. .+-+.+ .+|+..|..+|.. ..| +..-++||||.|.-- +|....+...+|.||++...+.+
T Consensus 41 ~~wdiPeg~LCPpvPgR-AdYih~laDLL~s-~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA 118 (292)
T COG3129 41 RYWDIPEGFLCPPVPGR-ADYIHHLADLLAS-TSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSA 118 (292)
T ss_pred eEecCCCCCcCCCCCCh-hHHHHHHHHHHHh-cCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHH
Confidence 467888775 233333 4577777776642 111 134579999877542 22222233466777776533322
Q ss_pred HHHHHHHcCCCcEEe---cCCCCCC-C---CCCCCcceEEeccccccccccHHHHHHHHHhccC
Q 044932 345 LAQVALERGFPAVVS---PLGNRRL-P---FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILR 401 (689)
Q Consensus 345 mlq~A~eRGL~~i~~---~~dt~~L-P---FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLR 401 (689)
..-+...-++...+. .-+..++ + -.+..||+++|.- ++|...+.+..--.|-++
T Consensus 119 ~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNP---PFh~s~~da~~gsqrk~~ 179 (292)
T COG3129 119 KAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNP---PFHDSAADARAGSQRKRR 179 (292)
T ss_pred HHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCC---CcchhHHHHHhcccCCcc
Confidence 222221113322111 1111121 1 1267899998763 555555454444444443
No 369
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=67.36 E-value=0.3 Score=42.91 Aligned_cols=91 Identities=23% Similarity=0.312 Sum_probs=52.8
Q ss_pred EeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhccc----c-chhhccccCCCCCCCccchhhccccc-cc
Q 044932 550 VMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYDRG----L-VGIYHDWCESFGTYPRSYDLLHADHL-FS 619 (689)
Q Consensus 550 vmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~RG----L-ig~yhdwce~f~typrTyDLlHa~~l-fs 619 (689)
|||+.+|.|.+..+|... .. =.+++-++- +..|.....+. + +=.++.=++.++..-.+||+|=+.++ |.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~-~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGP-SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcc-cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 10 022334442 24554444444 1 11122223334556669999999766 55
Q ss_pred cccCCcCCccceeeeeccccccCc
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGG 643 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G 643 (689)
. -..-. +..+|=+|=|+|||||
T Consensus 80 ~-~~~~~-~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 H-LSPEE-LEALLRRIARLLRPGG 101 (101)
T ss_dssp G-SSHHH-HHHHHHHHHHTEEEEE
T ss_pred C-CCHHH-HHHHHHHHHHHhCCCC
Confidence 4 33333 2568889999999998
No 370
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=66.74 E-value=30 Score=40.31 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=58.9
Q ss_pred CCCeEEEECCccchhHHH----hhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC---------CCC--------
Q 044932 308 NIRVVLEIGSADLSFVAS----LLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN---------RRL-------- 366 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~----La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt---------~~L-------- 366 (689)
...+||=+|||.-++++. .++..|+++|+.+ ..++.|.+-|.......... ..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~-----~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP-----EVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 467999999998775432 2244588888765 46777777665422111100 000
Q ss_pred --CCCC--CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 367 --PFPS--GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 367 --PFpD--~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.|.. +.+|+|+..- .++....+..+..++-+.+||||.++...-
T Consensus 239 ~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 239 MALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0111 4699998642 233222343446999999999999887654
No 371
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.64 E-value=9.3 Score=34.46 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=52.1
Q ss_pred ccchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCC---CC--CCCCCCcceEEeccccccccccH
Q 044932 318 ADLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNR---RL--PFPSGVFDAIHCDGCSITWHAHG 389 (689)
Q Consensus 318 GtGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~---~L--PFpD~SFDlVhcs~cli~W~~d~ 389 (689)
|.|.++..++ ...|++++.+ +..++++++.|....+...+.. .+ .++.+.+|+|+-.-. -
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~-----~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRS-----EEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------S 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS-----HHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------S
T ss_pred ChHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------c
Confidence 4676665555 3457777754 3567888888854443321110 00 134468999873211 1
Q ss_pred HHHHHHHHhccCCCcEEEEEcCC
Q 044932 390 GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 390 ~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
...+.+...+|+|||.+++..-.
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHHHhccCCEEEEEEcc
Confidence 37899999999999999998654
No 372
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=65.65 E-value=2.6 Score=45.45 Aligned_cols=104 Identities=20% Similarity=0.342 Sum_probs=73.0
Q ss_pred hcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC--Cchhhhhccccc----hhhccccCCCCCCCccc
Q 044932 537 LTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP--DTLPVIYDRGLV----GIYHDWCESFGTYPRSY 609 (689)
Q Consensus 537 ~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~--~tL~vI~~RGLi----g~yhdwce~f~typrTy 609 (689)
...|++++|+ -|||+++|-||++-.+... .|-|.-|.-..+. .--..|..+||- =..+||=. ++-.|
T Consensus 65 ~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd----~~e~f 138 (283)
T COG2230 65 LEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD----FEEPF 138 (283)
T ss_pred HHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc----ccccc
Confidence 3456777775 3999999999999888765 6766544332221 122458889998 44677744 45558
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|=|=+-|+|-..... . ..+.+-=+.++|+|||.+++-
T Consensus 139 DrIvSvgmfEhvg~~-~-~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 139 DRIVSVGMFEHVGKE-N-YDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ceeeehhhHHHhCcc-c-HHHHHHHHHhhcCCCceEEEE
Confidence 888999999876542 2 145666789999999998876
No 373
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=64.87 E-value=12 Score=38.83 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=51.6
Q ss_pred CeEEEECCccchhHHHhh--cCCeEEEEcCCcccHHHHHHHHHHc----CCCcE-EecCCCCCCCCCCCCcceEEecc--
Q 044932 310 RVVLEIGSADLSFVASLL--AKEVLTLTVGLKDDLVDLAQVALER----GFPAV-VSPLGNRRLPFPSGVFDAIHCDG-- 380 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La--~~~V~gmDIsp~D~seamlq~A~eR----GL~~i-~~~~dt~~LPFpD~SFDlVhcs~-- 380 (689)
.++.|+|+|+|.++...+ ...|+++..+|. ....|.+. |.... +...|+....| ...|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk-----~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPK-----RARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcH-----HHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 479999999997553322 346999998884 33445444 22222 23445555455 5789998853
Q ss_pred -ccccccccHHHHHHHHHhccCCCcEEE
Q 044932 381 -CSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 381 -cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
.++. +.-..++.-+...||-.|.++
T Consensus 107 TaLi~--E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIE--EKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhc--ccccHHHHHHHHHhhcCCccc
Confidence 1111 112244555555667777665
No 374
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=64.76 E-value=1.6 Score=48.99 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=52.5
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhh----ccccch---hhccccCCCCCCCccchhhccc--
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIY----DRGLVG---IYHDWCESFGTYPRSYDLLHAD-- 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~----~RGLig---~yhdwce~f~typrTyDLlHa~-- 615 (689)
..|+||.||.|+++..|... +-- .|+-++- ++-+..+. ..|+-. +-.|..+....++.+||+|=.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~--~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG--KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 57999999999998877642 110 1333332 22232221 223311 1233333333456889997443
Q ss_pred ----cccccccC------CcC------CccceeeeeccccccCcEEEEe
Q 044932 616 ----HLFSRLKS------RCR------QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 616 ----~lfs~~~~------~c~------~~~~illEmDRILRP~G~~iir 648 (689)
|++....+ ... +...||-+.=|+|+|||.++..
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 33331100 001 0124677788999999999965
No 375
>PRK00811 spermidine synthase; Provisional
Probab=64.27 E-value=3.4 Score=43.88 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=51.4
Q ss_pred CeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchhhhhccccch-------------h-hccccCCCCCCCccch
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLPVIYDRGLVG-------------I-YHDWCESFGTYPRSYD 610 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~vI~~RGLig-------------~-yhdwce~f~typrTyD 610 (689)
.-++|+++++|.|+++..+... ++--+-+|=.+. ..+.+. |..++ + ..|--+-+.+-+.+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-~vv~~a--~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-RVVEVC--RKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-HHHHHH--HHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 4678999999999999988765 443222222221 111111 11111 1 1111111223456899
Q ss_pred hhccccccccccCCcCC-ccceeeeeccccccCcEEEEe
Q 044932 611 LLHADHLFSRLKSRCRQ-PVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~-~~~illEmDRILRP~G~~iir 648 (689)
+|=.+. +..+...-.+ ....+-.+-|+|+|||.+++.
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986542 2222100000 023455778999999999996
No 376
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.45 E-value=1 Score=45.11 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 603 GTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 603 ~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
.+=||+-|+|-|.|++.++.-+-. .+-+=|.-|+|||||++-|.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg--~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEG--TSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHH--HHHHHHHHHHhCcCcEEEEE
Confidence 457899999999999988765444 35688999999999998776
No 377
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=63.42 E-value=3.2 Score=43.50 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=54.9
Q ss_pred EEeecCCcchhHHHHhccC---CceEEEeccCCCC-Cchhhh----hcccc--chhhccccCCCCCCCccchhhcccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAP-DTLPVI----YDRGL--VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~-~tL~vI----~~RGL--ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
.|+||.||.||+++.|... .- .|+-++.. .-|..+ -..|+ |-+++.=...++.....||.|=.+-=.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 5999999999998766431 11 13333322 222222 11232 112221122233333458887654322
Q ss_pred ccc------cC----Cc--------CCccceeeeeccccccCcEEEEe-------CchhhHHHHHH
Q 044932 619 SRL------KS----RC--------RQPVSIVVEMDRILRPGGWAIVR-------DKVEILDPLEG 659 (689)
Q Consensus 619 s~~------~~----~c--------~~~~~illEmDRILRP~G~~iir-------D~~~~l~~v~~ 659 (689)
|.. .. +. .....||-.+=++|||||.++.. ++.+++..+.+
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence 211 00 00 00134777888999999999887 33446665543
No 378
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=63.01 E-value=17 Score=38.06 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=55.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcC
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCR 626 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~ 626 (689)
-.|-||++|=+-.|+++.+. .|.-...|... -.-+..|= ...|-=+-+.|++ -..+|+-. .+
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---~~Vtacdi----------a~vPL~~~svDv~--VfcLSLMG--Tn 136 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---PRVTACDI----------ANVPLEDESVDVA--VFCLSLMG--TN 136 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-SS---TTEEES-T----------TS-S--TT-EEEE--EEES---S--S-
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCCC---CCEEEecC----------ccCcCCCCceeEE--EEEhhhhC--CC
Confidence 46999999999999998643 34333344432 11111111 2222334566763 23344333 33
Q ss_pred CccceeeeeccccccCcEEEEeCchh---hHHHHHHHHhhcceeEEEeecC
Q 044932 627 QPVSIVVEMDRILRPGGWAIVRDKVE---ILDPLEGILRSLHWEIRMTYAQ 674 (689)
Q Consensus 627 ~~~~illEmDRILRP~G~~iirD~~~---~l~~v~~i~~~lrW~~~~~~~~ 674 (689)
..+.|.|--|||||||.+||-+-.. -+...-+.+.++..+....|..
T Consensus 137 -~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 137 -WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred -cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC
Confidence 2468999999999999999986444 2333444556777776665543
No 379
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=62.97 E-value=43 Score=36.07 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCCeEEEECCccch------hHHHhh-cCCeEEEEcCCcccHHHHHHHHHHcCCC---cEEecCCCC-------------
Q 044932 308 NIRVVLEIGSADLS------FVASLL-AKEVLTLTVGLKDDLVDLAQVALERGFP---AVVSPLGNR------------- 364 (689)
Q Consensus 308 ~~R~VLDVGCGtGs------faa~La-~~~V~gmDIsp~D~seamlq~A~eRGL~---~i~~~~dt~------------- 364 (689)
+++..||+|||.=. .+.... +..|.-+|.+|.-. +. ..++-.+-+ ..+...|..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~--ah-~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVL--AH-ARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHH--HC-CHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHH--HH-HHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 58999999999653 222222 34588899988411 11 112112212 223222221
Q ss_pred CCCCCCCCcceEEecccccccc---ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 365 RLPFPSGVFDAIHCDGCSITWH---AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
-|.| ++-+=++++ ..+||. +++..++..+...|.||.+|+|+..
T Consensus 145 ~lD~-~rPVavll~--~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 145 LLDF-DRPVAVLLV--AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp C--T-TS--EEEEC--T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred cCCC-CCCeeeeee--eeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 1122 233333432 344555 3678999999999999999999964
No 380
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=61.77 E-value=12 Score=39.82 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=52.6
Q ss_pred CCCeEEEECCccchhHHHhhcC-------------CeEEEEcCCcccHHHHHHHHHHcCCCcEEecC---CC-CC-C-CC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-------------EVLTLTVGLKDDLVDLAQVALERGFPAVVSPL---GN-RR-L-PF 368 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-------------~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~---dt-~~-L-PF 368 (689)
...+|+|+.+-.|+|...|..+ .++++|+-|- ..+ .|+.-+.+.+ ++ +. | -|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M------aPI---~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM------API---EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC------Ccc---CceEEeecccCCHhHHHHHHHHh
Confidence 3678999999999988766421 2788887652 111 1211111111 00 00 0 15
Q ss_pred CCCCcceEEecc----cccccc-c-----cHHHHHHHHHhccCCCcEEEEE
Q 044932 369 PSGVFDAIHCDG----CSITWH-A-----HGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 369 pD~SFDlVhcs~----cli~W~-~-----d~~~aL~EI~RVLRPGG~fVIs 409 (689)
....-|+|+|-+ .-+|-. + -...+|.-..+||||||.|+--
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 555788888853 112201 1 1235667778999999999854
No 381
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=61.72 E-value=3.1 Score=44.24 Aligned_cols=113 Identities=17% Similarity=0.087 Sum_probs=66.3
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-CchhhhhccccchhhccccCCC--------CCCCccchhhcccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESF--------GTYPRSYDLLHADH 616 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f--------~typrTyDLlHa~~ 616 (689)
.-|-..|.+||.| +||.++..- -=||+-++-. --|. +..-+.=-+||+---+| .-=+.+.|||-|.-
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~-~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLK-VAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHH-HhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 4568999999999 887775321 1246655543 2333 33333333444443333 33488999987654
Q ss_pred ccccccCCcCCccceeeeeccccccCc-E--EE-EeCchhhHHHHHHHHhhccee
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGG-W--AI-VRDKVEILDPLEGILRSLHWE 667 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G-~--~i-irD~~~~l~~v~~i~~~lrW~ 667 (689)
.| +-|+ ++..+=++-|||||.| . || .+|+.-+-.++-.+..++.|+
T Consensus 109 a~----HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 AV----HWFD-LERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hH----Hhhc-hHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 43 3467 4778899999999999 2 22 233333444455555555554
No 382
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=61.37 E-value=25 Score=34.38 Aligned_cols=94 Identities=21% Similarity=0.235 Sum_probs=50.5
Q ss_pred eEEEEcCCcccHHHHHHHHHHc----CCCc--EEecCCCCCCC-C-CCCCcceEEeccccccccc--------cHHHHHH
Q 044932 331 VLTLTVGLKDDLVDLAQVALER----GFPA--VVSPLGNRRLP-F-PSGVFDAIHCDGCSITWHA--------HGGKLLL 394 (689)
Q Consensus 331 V~gmDIsp~D~seamlq~A~eR----GL~~--i~~~~dt~~LP-F-pD~SFDlVhcs~cli~W~~--------d~~~aL~ 394 (689)
|+++||-. .+++..++| ++.. .+...+-+.|. | +.+.+|+|+...-.+|-.+ .--.+|.
T Consensus 2 VyaFDIQ~-----~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 2 VYAFDIQE-----EAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEES-H-----HHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred EEEEECHH-----HHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 78888753 344444443 4432 22222223332 3 3358999987644444211 1236889
Q ss_pred HHHhccCCCcEEEEEcCCCc---hhHHHHHHHHHHhcc
Q 044932 395 EMNRILRPSGYFILSTKHDS---IEEEEALTTLTASIC 429 (689)
Q Consensus 395 EI~RVLRPGG~fVIsdp~~~---le~~~~ie~La~~l~ 429 (689)
.+.++|+|||.++|..-+.. .++.+.+.++++.+.
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred HHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999875533 345566777777654
No 383
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=60.59 E-value=33 Score=37.01 Aligned_cols=97 Identities=23% Similarity=0.324 Sum_probs=60.7
Q ss_pred CCeEEEECCccchhHHHhhc---C--CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCCCC----CCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA---K--EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLPFP----SGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~---~--~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LPFp----D~SFDlVhc 378 (689)
...||=+|++.|.--....+ . -|+++.+++... ...+.+|..| ++..++..+ +.|+. -.-.|+|++
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkRtNiiPIiEDA---rhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKRTNIIPIIEDA---RHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhccCCceeeeccC---CCchheeeeeeeEEEEec
Confidence 46899999999975444433 2 289999988633 4667778777 443444322 34421 235666654
Q ss_pred ccccccccccH-HHHHHHHHhccCCCcEEEEEcCCC
Q 044932 379 DGCSITWHAHG-GKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 379 s~cli~W~~d~-~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
- + . .++. ..+.....-.||+||.|+|+....
T Consensus 233 D-v--a-qpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 233 D-V--A-QPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred c-C--C-CchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 2 1 1 1222 345567778999999999997653
No 384
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.47 E-value=1.7 Score=45.96 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccch-hhccccCCCC--CCCccchhhccccc
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVG-IYHDWCESFG--TYPRSYDLLHADHL 617 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig-~yhdwce~f~--typrTyDLlHa~~l 617 (689)
.+.+.+|-++|.++|+|=+.-+|++.--- ..=++- .|-|.+-+++|+-- +||-=-..|. +=++-+|||-|.-+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 45677999999999999999999864100 222232 37888889998653 3443334465 67889999999999
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+-+. . ++.|+.=..+.|.|||++++.
T Consensus 198 l~YlG---~-Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 198 LPYLG---A-LEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHhhc---c-hhhHHHHHHHhcCCCceEEEE
Confidence 98664 3 467888899999999999998
No 385
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=60.47 E-value=3.5 Score=41.70 Aligned_cols=95 Identities=12% Similarity=0.118 Sum_probs=56.9
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccc-cchhhc-cccCCCCCCCccchhhcccccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRG-LVGIYH-DWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RG-Lig~yh-dwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
-..|+|.++|.|-++.+|... +- ..|+-++- ++-+...-++- =+-+++ |..+ +.-+++||+|-+.++|.+..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCC
Confidence 345999999999999999764 21 12333332 22332221210 011222 3233 23467999999999998764
Q ss_pred CCcCCccceeeeeccccccCcEEEEeC
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.-. +..+|-||-|++ +++++|-+
T Consensus 120 -p~~-~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDN-LPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHH-HHHHHHHHHhhc--CcEEEEEE
Confidence 223 356788888988 46777743
No 386
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=60.32 E-value=36 Score=36.35 Aligned_cols=91 Identities=26% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCeEEEECCcc-chhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC---CCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR---LPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~---LPFpD~SFDlVhcs~c 381 (689)
..+||=+|||. |.++..++. ..|++++.+. .++..++++.+.|...+ ...... ... .+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~--~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~-~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRD--PPDPKADIVEELGATYV--NSSKTPVAEVKL-VGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEEe--cCCccchhhhhh-cCCCCEEEECcC
Confidence 45788888863 345544443 3466665421 12356677777775432 111111 001 246898874311
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
....+.+..++||+||.+++...
T Consensus 248 -------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -------CHHHHHHHHHHccCCcEEEEEec
Confidence 11478899999999999987653
No 387
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.32 E-value=42 Score=34.93 Aligned_cols=91 Identities=19% Similarity=0.080 Sum_probs=50.9
Q ss_pred CCeEEEECCc-cchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSA-DLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCG-tGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..+||-+||| .|..+..++.. .|++++-+ ...++.+.+.|....+.........-..+.||+++... .
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~-~-- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRS-----PDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV-V-- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-C--
Confidence 4678888886 55555444432 35555433 34566665556433322111000000124689887421 1
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
....+.++.+.|+++|.++....
T Consensus 235 ----~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 ----SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred ----cHHHHHHHHHhcccCCEEEEECC
Confidence 12578899999999999988753
No 388
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=58.23 E-value=0.76 Score=40.79 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=51.6
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cch----hhhhccc-------cchhhccccCCCCCCCccchhhcccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTL----PVIYDRG-------LVGIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL----~vI~~RG-------Lig~yhdwce~f~typrTyDLlHa~~ 616 (689)
.|||+.+|.|.|+.++.... .-+|+=++-. ..+ -.+-..| ..|=+.+..+.+ -+..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~--~~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL--PDGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC--TTT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc--cCceeEEEEECC
Confidence 48999999999998887543 1122222210 000 0000111 223333444344 347899998887
Q ss_pred ccccccC-C---cCCccceeeeeccccccCcEEEE
Q 044932 617 LFSRLKS-R---CRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 617 lfs~~~~-~---c~~~~~illEmDRILRP~G~~ii 647 (689)
-|..... . -.....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 7764311 0 11124567899999999999875
No 389
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=57.88 E-value=64 Score=34.42 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=50.8
Q ss_pred CCeEEEECCcc-chhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..+||=.|+|. |.++..++. ..|++++.++ ..+++|++.|....+. ... ...+.||+++-.-.
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~-----~~~~~a~~~Ga~~vi~---~~~--~~~~~~d~~i~~~~--- 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA-----AARRLALALGAASAGG---AYD--TPPEPLDAAILFAP--- 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh-----HHHHHHHHhCCceecc---ccc--cCcccceEEEECCC---
Confidence 46889899753 223344443 2366665443 4567888877654332 111 11245787653211
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. ...+....++||+||.+++...
T Consensus 233 ---~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 ---A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2578899999999999988764
No 390
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=57.35 E-value=34 Score=36.57 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=47.8
Q ss_pred CCeEEEECCcc-chhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEe-ccc
Q 044932 309 IRVVLEIGSAD-LSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHC-DGC 381 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhc-s~c 381 (689)
..+||=+|||. |.++..++. ..|++++.++ ..+++|++-+. .+. .+ .+. .+..||+|+- ...
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~-----~k~~~a~~~~~--~~~-~~--~~~-~~~g~d~viD~~G~ 232 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ-----EKLDLFSFADE--TYL-ID--DIP-EDLAVDHAFECVGG 232 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH-----hHHHHHhhcCc--eee-hh--hhh-hccCCcEEEECCCC
Confidence 46899999863 233333332 2477777654 34555554222 111 11 110 1124888873 221
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
. .....+.+..++||+||.+++..
T Consensus 233 ~-----~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 233 R-----GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred C-----ccHHHHHHHHHhCcCCcEEEEEe
Confidence 0 01257889999999999998765
No 391
>PLN02366 spermidine synthase
Probab=57.04 E-value=5.3 Score=43.31 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=52.1
Q ss_pred CeeEEeecCCcchhHHHHhccCC-ceEEEeccCCC------CCchhhhhcccc----chhh-ccccCCCCCC-Cccchhh
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA------PDTLPVIYDRGL----VGIY-HDWCESFGTY-PRSYDLL 612 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~------~~tL~vI~~RGL----ig~y-hdwce~f~ty-prTyDLl 612 (689)
.-++|+++++|.|+.+..|...+ +.-+-+|=.+. ...++-+- .|| +-+. .|-=+-+... ++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~-~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLA-VGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhc-cccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 47889999999999999887764 33222222221 11222110 011 0111 1100001222 5689998
Q ss_pred ccccccccccCCcCC-ccceeeeeccccccCcEEEEe
Q 044932 613 HADHLFSRLKSRCRQ-PVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~-~~~illEmDRILRP~G~~iir 648 (689)
-.+. +......-.+ -...+-.+=|.|+|||.+++.
T Consensus 170 i~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 7653 2222111100 023456778999999999875
No 392
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=56.70 E-value=16 Score=37.87 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=52.4
Q ss_pred ccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhh--------cCCeEEEEcCCcccHHHHHHH-HHHcCC
Q 044932 284 EFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLL--------AKEVLTLTVGLKDDLVDLAQV-ALERGF 354 (689)
Q Consensus 284 ~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La--------~~~V~gmDIsp~D~seamlq~-A~eRGL 354 (689)
+++..+-.|-+.|-++ ..++|+++|.-.|+-+..++ ...|+++|++........++. -....+
T Consensus 16 q~P~Dm~~~qeli~~~--------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 16 QYPQDMVAYQELIWEL--------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI 87 (206)
T ss_dssp S-HHHHHHHHHHHHHH----------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred cCHHHHHHHHHHHHHh--------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence 3445555666666554 24689999999987443322 245999999653221111110 001223
Q ss_pred CcEEecCCCCCC----C---C-CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 355 PAVVSPLGNRRL----P---F-PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 355 ~~i~~~~dt~~L----P---F-pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..+.+ +.... + . ......+|+--.+ |-+.+-...|.-...+|.||+|+|+.|+.
T Consensus 88 ~~i~G--ds~d~~~~~~v~~~~~~~~~vlVilDs~--H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 88 TFIQG--DSIDPEIVDQVRELASPPHPVLVILDSS--HTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEES---SSSTHHHHTSGSS----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred EEEEC--CCCCHHHHHHHHHhhccCCceEEEECCC--ccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 22222 21111 0 1 1123445543222 22345567777789999999999998864
No 393
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=55.61 E-value=4.2 Score=44.41 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=19.8
Q ss_pred ccCCCCCCeeEEeecCCcchhHHHHhcc
Q 044932 539 GLGIDWSKIRNVMDMKSIYGGFAAALAQ 566 (689)
Q Consensus 539 ~l~~~~~~iRNvmDMna~~GgFAAal~~ 566 (689)
.+.++.+ ..|+|+++|.|.+++.|..
T Consensus 75 ~L~i~~g--~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 75 WVGLDKG--MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred hcCCCCC--CEEEEEeCCccHHHHHHHH
Confidence 3445444 3699999999999988864
No 394
>PRK01581 speE spermidine synthase; Validated
Probab=55.46 E-value=11 Score=42.40 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=52.4
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh--------ccc-c-----chhhccccCCCCCCCccch
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY--------DRG-L-----VGIYHDWCESFGTYPRSYD 610 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~--------~RG-L-----ig~yhdwce~f~typrTyD 610 (689)
.-++|+++++|.|+.+..+...+- |.+|+-++- +.-+.+.- .+| + --+..|--+-+..-+++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 467999999999998887776541 223332222 11111110 111 0 0011122222233356788
Q ss_pred hhccccccccccCCcCC--ccceeeeeccccccCcEEEEeCc
Q 044932 611 LLHADHLFSRLKSRCRQ--PVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~--~~~illEmDRILRP~G~~iirD~ 650 (689)
+|=.+- +........- -...+-.+-|+|+|||.+++...
T Consensus 229 VIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 887762 2211111110 02345578899999999998854
No 395
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.18 E-value=45 Score=34.75 Aligned_cols=90 Identities=19% Similarity=0.092 Sum_probs=50.2
Q ss_pred CCeEEEECCc-cchhHHHhhc-C--C-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC----CCCCCCCcceEEec
Q 044932 309 IRVVLEIGSA-DLSFVASLLA-K--E-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR----LPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCG-tGsfaa~La~-~--~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~----LPFpD~SFDlVhcs 379 (689)
..+||-+|+| .|..++.++. . . |++++-+ .....++.+.|+...+.. .... ...+.+.+|+++..
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPN-----EEKLELAKKLGATETVDP-SREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHhCCeEEecC-CCCCHHHHHHhcCCCCcEEEEC
Confidence 4688888864 2333333443 2 3 4444333 345566666675432221 1110 01134679999853
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.. ....+.++.+.|+++|.++....
T Consensus 234 ~~-------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 TG-------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC-------ChHHHHHHHHHHhcCCEEEEEec
Confidence 11 12578899999999999987654
No 396
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=54.51 E-value=7.9 Score=43.65 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=17.6
Q ss_pred ceeeeeccccccCcEEEEeC
Q 044932 630 SIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 630 ~illEmDRILRP~G~~iirD 649 (689)
.||-++=|+|+|||.+++..
T Consensus 358 ~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEe
Confidence 47888899999999999984
No 397
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=54.36 E-value=9 Score=41.45 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=66.3
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCCCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcCCc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQP 628 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~ 628 (689)
-|-||++|=+-.|.. ...+|--|-.|++...-+.- |.- ..|.-++|.|++ -..+|+-. .+ +
T Consensus 183 vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~V~~c------------Dm~-~vPl~d~svDva--V~CLSLMg--tn-~ 243 (325)
T KOG3045|consen 183 VIADFGCGEAKIASS-ERHKVHSFDLVAVNERVIAC------------DMR-NVPLEDESVDVA--VFCLSLMG--TN-L 243 (325)
T ss_pred EEEecccchhhhhhc-cccceeeeeeecCCCceeec------------ccc-CCcCccCcccEE--EeeHhhhc--cc-H
Confidence 488999998877652 33557777777766431110 111 135567888873 34455432 44 3
Q ss_pred cceeeeeccccccCcEEEEeCchhhHHHHHHH---HhhcceeEEEee
Q 044932 629 VSIVVEMDRILRPGGWAIVRDKVEILDPLEGI---LRSLHWEIRMTY 672 (689)
Q Consensus 629 ~~illEmDRILRP~G~~iirD~~~~l~~v~~i---~~~lrW~~~~~~ 672 (689)
.+.+.|.-|||+|||.+||-.-..=..-|+.+ +..|..+....+
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 67799999999999999998655434444433 366777766544
No 398
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=54.30 E-value=39 Score=39.95 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=38.2
Q ss_pred CCcceEEecc-----ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 371 GVFDAIHCDG-----CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 371 ~SFDlVhcs~-----cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
..||+++.-. |--.|. ..+|..|.|+++|||.|+-.+.. ..+..-+...+|++..
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~---~~~~~~l~~~~~~~~~~~t~t~a------~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWS---PNLFNALARLARPGATLATFTSA------GFVRRGLQEAGFTVRK 224 (662)
T ss_pred ccccEEEeCCCCCccChhhcc---HHHHHHHHHHhCCCCEEEEeehH------HHHHHHHHHcCCeeee
Confidence 5689998532 111243 37999999999999999855432 2356677888887754
No 399
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=52.90 E-value=7.2 Score=44.03 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=54.3
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhh----ccccch---hhccccCCCC-CCCc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIY----DRGLVG---IYHDWCESFG-TYPR 607 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~----~RGLig---~yhdwce~f~-typr 607 (689)
|.+..+ ..|+||.||.||++.+|... .- .|+-++- ++-|..+- ..|+-. +-.|... ++ ..+.
T Consensus 233 l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~ 306 (431)
T PRK14903 233 MELEPG--LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQD 306 (431)
T ss_pred hCCCCC--CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhc
Confidence 344445 36999999999988766542 21 2444443 23343332 224311 1223332 22 2345
Q ss_pred cchhhccccccccccCC------------------cCCccceeeeeccccccCcEEEEe
Q 044932 608 SYDLLHADHLFSRLKSR------------------CRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 608 TyDLlHa~~lfs~~~~~------------------c~~~~~illEmDRILRP~G~~iir 648 (689)
+||+|=.+---|....- ...-..||-..=+.|+|||.++..
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 78887554333222110 000134577788999999999987
No 400
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=52.87 E-value=69 Score=31.59 Aligned_cols=93 Identities=20% Similarity=0.154 Sum_probs=52.2
Q ss_pred CCCeEEEECCcc-chhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCC---CC-CCCCCCcceEEec
Q 044932 308 NIRVVLEIGSAD-LSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNR---RL-PFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGt-Gsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~---~L-PFpD~SFDlVhcs 379 (689)
...+||-.|+|. |..++.++. ..|++++.++ ...+.+...|....+...+.. .+ ....+.||+++..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD-----EKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 356899999985 544444443 3466665443 345555555533222111100 00 1123679999753
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.. . ...+..+.+.|+++|.++.....
T Consensus 209 ~~-~------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 209 VG-G------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CC-C------HHHHHHHHHhcccCCEEEEEccC
Confidence 21 1 14677788999999999987643
No 401
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=51.94 E-value=9.7 Score=36.04 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=18.5
Q ss_pred CCeEEEECCccchhHHHhhcCCeEEEEc
Q 044932 309 IRVVLEIGSADLSFVASLLAKEVLTLTV 336 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~V~gmDI 336 (689)
.....|+|||.|.+.--|...+..|..|
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 4569999999997665555544444333
No 402
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=50.83 E-value=21 Score=38.82 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=41.9
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC---chhH-----HHHHHHHHHhcceeEE
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD---SIEE-----EEALTTLTASICWNIL 433 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~---~le~-----~~~ie~La~~l~W~~v 433 (689)
|. +-||+|+.+...+| .+-.++.++++|+|.|++-...- ...+ ...+.++|+..+|+.+
T Consensus 219 y~-~~Fd~ifvs~s~vh------~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 219 YQ-NFFDLIFVSCSMVH------FLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hc-CCCCEEEEhhhhHh------hcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 44 88999997654444 22236999999999999987632 2211 2579999999999765
No 403
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=49.80 E-value=61 Score=33.98 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCeEEEECCcc-chhHHHhhc-C---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCC--CCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSAD-LSFVASLLA-K---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG--NRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~-~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d--t~~LPFpD~SFDlVhcs~c 381 (689)
..+||-.|||. |.++..++. . .|++++-+ +.+...+.+.|....+..-+ ...+....+.||+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s-----~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLA-----DAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC
Confidence 46788888764 444444443 2 34455433 34555555556533221110 0112212234899874311
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
....+.++.+.|+++|.++...
T Consensus 241 -------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1256889999999999999764
No 404
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=49.32 E-value=2.6 Score=41.42 Aligned_cols=97 Identities=22% Similarity=0.339 Sum_probs=51.1
Q ss_pred CCeeEEeecCCcch--hHHHHhccCCceEEEeccCCCCCchhhh---hcc------c-cchhhccccCCC--CC-CCccc
Q 044932 545 SKIRNVMDMKSIYG--GFAAALAQQKIWVMNVVPVHAPDTLPVI---YDR------G-LVGIYHDWCESF--GT-YPRSY 609 (689)
Q Consensus 545 ~~iRNvmDMna~~G--gFAAal~~~~vWVMNvvp~~~~~tL~vI---~~R------G-Lig~yhdwce~f--~t-yprTy 609 (689)
..-++||..+||.| |++||... ....||-++.+..|+.+ .++ + .--..+||.+.+ .. -++.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 44578999999888 88888772 12224444443333211 111 1 233456898854 11 25689
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+|-|+-++=... + ...++-=|.++|.|+|.+++-
T Consensus 121 D~IlasDv~Y~~~--~--~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 121 DVILASDVLYDEE--L--FEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SEEEEES--S-GG--G--HHHHHHHHHHHBTT-TTEEEE
T ss_pred CEEEEecccchHH--H--HHHHHHHHHHHhCCCCEEEEE
Confidence 9999988775321 1 234455578999999998875
No 405
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=48.96 E-value=47 Score=35.96 Aligned_cols=91 Identities=11% Similarity=0.014 Sum_probs=47.7
Q ss_pred CCeEEEECCcc-chhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC-CCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP-FPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP-FpD~SFDlVhcs~cli 383 (689)
..+||=.|||. |.++..++. ..|++++.++. .....+.+.|....+...+...+. .. +.+|+|+-.-. .
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~----~~~~~~~~~Ga~~vi~~~~~~~~~~~~-~~~D~vid~~g-~ 257 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN----KEDEAINRLGADSFLVSTDPEKMKAAI-GTMDYIIDTVS-A 257 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc----hhhhHHHhCCCcEEEcCCCHHHHHhhc-CCCCEEEECCC-C
Confidence 45677788852 333444432 34666665432 223444555654333211100000 11 24888874211 1
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
...+.+..+.|++||.+++...
T Consensus 258 ------~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 258 ------VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ------HHHHHHHHHHhcCCcEEEEeCC
Confidence 1478889999999999997653
No 406
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=48.64 E-value=52 Score=34.11 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=58.5
Q ss_pred eEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC---CCCCCCcceEEecc-c--
Q 044932 311 VVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL---PFPSGVFDAIHCDG-C-- 381 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L---PFpD~SFDlVhcs~-c-- 381 (689)
+++|+=||.|++...|...+ |+++|+++. +. ..++++.+ .....|...+ .++. .+|+++.+. |
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~-----a~-~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPD-----AC-ETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHH-----HH-HHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHH-----HH-Hhhhhccc-ccccccccccccccccc-cceEEEeccCCce
Confidence 68999999999877776654 778888763 22 22233233 3333333333 2553 599998531 1
Q ss_pred -ccc----ccccH----HHHHHHHHhccCCCcEEEEEcCCCch-----hHHHHHHHHHHhcceeEEE
Q 044932 382 -SIT----WHAHG----GKLLLEMNRILRPSGYFILSTKHDSI-----EEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 -li~----W~~d~----~~aL~EI~RVLRPGG~fVIsdp~~~l-----e~~~~ie~La~~l~W~~v~ 434 (689)
+.. -..+. -..+.++...++|- +|++---+..+ .....+...++.+++.+..
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk-~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFLRIVKELKPK-YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW 139 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S-EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred EeccccccccccccchhhHHHHHHHhhccce-EEEecccceeeccccccccccccccccccceeehh
Confidence 110 01121 12344555667784 34443322222 1245566777888887643
No 407
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.65 E-value=1.2e+02 Score=32.94 Aligned_cols=27 Identities=4% Similarity=-0.023 Sum_probs=20.0
Q ss_pred EEEECCccchhHHHhhcCC---eEEEEcCC
Q 044932 312 VLEIGSADLSFVASLLAKE---VLTLTVGL 338 (689)
Q Consensus 312 VLDVGCGtGsfaa~La~~~---V~gmDIsp 338 (689)
|||+=||.|.+...|...+ ++++|+++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~ 30 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK 30 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH
Confidence 5899999998877666543 56788765
No 408
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=46.45 E-value=10 Score=42.51 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=51.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh---cc-cc-ch-hhccccCCCCCC-Cccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY---DR-GL-VG-IYHDWCESFGTY-PRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~---~R-GL-ig-~yhdwce~f~ty-prTyDLlHa~~lfs 619 (689)
..|+|+.||.|+++..|...-- -..|+-++. +.-|..+- .| |+ +- +-+|-.+....+ +.+||+|=.+-=+|
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 3699999999999988765310 011333332 12222221 11 22 11 122333322222 46799886444333
Q ss_pred cc-----------cCC-c------CCccceeeeeccccccCcEEEEe
Q 044932 620 RL-----------KSR-C------RQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 620 ~~-----------~~~-c------~~~~~illEmDRILRP~G~~iir 648 (689)
.. ... - .....+|-..=++|+|||.+++.
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 000 0 00135677888999999999975
No 409
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=45.46 E-value=55 Score=35.91 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc--CCceEE--EeccCC----CCCchhhhhccccchhh
Q 044932 524 DTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ--QKIWVM--NVVPVH----APDTLPVIYDRGLVGIY 595 (689)
Q Consensus 524 D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~--~~vWVM--Nvvp~~----~~~tL~vI~~RGLig~y 595 (689)
.|+.|...|-....+..-++.. .++|.++|.|..|-+|.. .++.|. -|-++. +.|-. -.-.-|-|++.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~---~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~q-r~~l~g~i~v~ 204 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHT---HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQ-RLKLSGRIEVI 204 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccc---eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHH-HHhhcCceEEE
Confidence 5788999987533333333322 799999999988888754 233332 111111 11221 12234677888
Q ss_pred cc--ccCCCCCCC---ccchhhcccc--cccc-----------cc--------CCcC-CccceeeeeccccccCcEEEEe
Q 044932 596 HD--WCESFGTYP---RSYDLLHADH--LFSR-----------LK--------SRCR-QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 596 hd--wce~f~typ---rTyDLlHa~~--lfs~-----------~~--------~~c~-~~~~illEmDRILRP~G~~iir 648 (689)
|. =-++|.+|| -+||||=++- +++. |. .-|. .+..+..=.=|.|+|||++++.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 76 456677777 8888876542 2221 00 0111 1122333456999999999987
Q ss_pred -----CchhhHHHHHHHH-hhcceeEEEe-ecCCCceEEEEEe
Q 044932 649 -----DKVEILDPLEGIL-RSLHWEIRMT-YAQDKEGILCAQK 684 (689)
Q Consensus 649 -----D~~~~l~~v~~i~-~~lrW~~~~~-~~~~~E~iL~~~K 684 (689)
+...++..+..-. ..-.|.+.+. |-...+++++..+
T Consensus 285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 285 LVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR 327 (328)
T ss_pred ecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEEe
Confidence 2333444333322 4455666665 3345677777654
No 410
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=45.46 E-value=6.4 Score=41.95 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=35.7
Q ss_pred CCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 604 TYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 604 typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
-.+-+.|+|-+-.+||..... . +..++=..-|+|+|||.+++||=
T Consensus 140 ~~~~svD~it~IFvLSAi~pe-k-~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPE-K-MQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred CCcCccceEEEEEEEeccChH-H-HHHHHHHHHHHhCCCcEEEEeec
Confidence 366789999999999986532 2 24567778899999999999984
No 411
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=44.88 E-value=19 Score=44.26 Aligned_cols=10 Identities=10% Similarity=0.683 Sum_probs=5.4
Q ss_pred cccccccCCCC
Q 044932 182 AHYSWKLCSTR 192 (689)
Q Consensus 182 ~~~~~~~C~~~ 192 (689)
-.|.|+ ||..
T Consensus 418 lPftf~-~P~s 427 (840)
T PF04147_consen 418 LPFTFP-CPSS 427 (840)
T ss_pred CCceec-CCCC
Confidence 355555 7653
No 412
>PRK11524 putative methyltransferase; Provisional
Probab=43.51 E-value=42 Score=35.59 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCCeEEEECCccchh--HHHhhcCCeEEEEcCCcccHHHHHHHHHHc
Q 044932 308 NIRVVLEIGSADLSF--VASLLAKEVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 308 ~~R~VLDVGCGtGsf--aa~La~~~V~gmDIsp~D~seamlq~A~eR 352 (689)
.+..|||-=||+|+. ++..+++..+|+++++ ...+.|.+|
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~-----~Y~~~a~~R 249 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS-----EYIKMGLRR 249 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH-----HHHHHHHHH
Confidence 467999999999974 4556688899999986 355666666
No 413
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=43.48 E-value=78 Score=35.28 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCCeEEEECCccch----hHHHhhcC-------CeEEEEc----CCccc---HHHHHHHHHHcCCCcEEecCCC---CC-
Q 044932 308 NIRVVLEIGSADLS----FVASLLAK-------EVLTLTV----GLKDD---LVDLAQVALERGFPAVVSPLGN---RR- 365 (689)
Q Consensus 308 ~~R~VLDVGCGtGs----faa~La~~-------~V~gmDI----sp~D~---seamlq~A~eRGL~~i~~~~dt---~~- 365 (689)
..-+|+|+|.|.|. +-.+|+.+ .+|+++. +.... .....++|..-|++..+..+-. +.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 34579999999995 44455543 2777776 11111 1234466777799887764211 11
Q ss_pred ----CCCCCCCcceEEecccccccc------ccHHHHHHHHHhccCCCcEEEEE
Q 044932 366 ----LPFPSGVFDAIHCDGCSITWH------AHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 366 ----LPFpD~SFDlVhcs~cli~W~------~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
|-..++.+=+|.|...+.+-. .++...+...-|-|+|.-.+++-
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 222223322333433221111 12456678888899998555443
No 414
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=43.40 E-value=9.6 Score=39.15 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=51.6
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchh-hhhccccchhhcc--------------ccCCCCCC---C-cc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLP-VIYDRGLVGIYHD--------------WCESFGTY---P-RS 608 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~-vI~~RGLig~yhd--------------wce~f~ty---p-rT 608 (689)
.|+|..+|.|--|..|.++.. +|+-++-. .-+. ..-++|+-....+ +|.-|-.+ + -+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999998764 35555432 2121 1235555322111 22211111 0 14
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEE
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
||+|-...+|..... .. -...+-.|-++|+|||.+++
T Consensus 117 fd~v~D~~~~~~l~~-~~-R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIALPE-EM-RERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhCCH-HH-HHHHHHHHHHHcCCCCeEEE
Confidence 555554444443321 11 13457788999999986444
No 415
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.89 E-value=99 Score=33.05 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCeEEEECCcc-chhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC--CCC----C-C-CCCCcc--
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN--RRL----P-F-PSGVFD-- 374 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt--~~L----P-F-pD~SFD-- 374 (689)
..+||=+|||. |.++..++. ..|++++.++ ..++++.+.|....+..... ..+ . + ....+|
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP-----EKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 46899999843 334444442 3466665543 46777777775433321110 000 0 0 112343
Q ss_pred --eEE-eccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 375 --AIH-CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 375 --lVh-cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|+ |... ..++....++|++||++++....
T Consensus 242 ~d~v~d~~g~--------~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 242 GWKIFECSGS--------KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cCEEEECCCC--------hHHHHHHHHHHhcCCeEEEECcC
Confidence 554 3221 25677788899999999987643
No 416
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=42.16 E-value=24 Score=36.69 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=50.2
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEe--cCCC---CC--CCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVS--PLGN---RR--LPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~--~~dt---~~--LPFpD~SFDl 375 (689)
+..+|||+||..|+|+.-..++ -|+|+|+-+.. --+|...+.+ +-|. .+ ..+|++..|+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------PPEGATIIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------CCCCcccccccccCCHHHHHHHHHhCCCCcccE
Confidence 3579999999999987654432 27888875421 1123222211 0010 00 1246788999
Q ss_pred EEecc------ccccccccH----HHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDG------CSITWHAHG----GKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~------cli~W~~d~----~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|++-+ ..+-=|... ..+|.=..-.|+|+|.|+.-.-
T Consensus 140 VlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 140 VLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred EEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 98632 111100000 1223333356789999998653
No 417
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=41.32 E-value=54 Score=33.98 Aligned_cols=52 Identities=21% Similarity=0.427 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCC
Q 044932 389 GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 389 ~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
....+.++.|+|+++|.+++..+..... .+...++.++|.... ..||.|+..
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~---~~~~~~~~~gf~~~~----------~iiw~k~~~ 129 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLA---RIEDIAKKLGFEILG----------KIIWKKPSP 129 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhh---HHHHHHHhCCCeEee----------eEEEeCCCC
Confidence 3478899999999999999998864332 255667778998764 379999754
No 418
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=40.61 E-value=8.6 Score=43.23 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=31.9
Q ss_pred cceeeeeccccccCcEEEEeC----chhhHHHHHHHHhhc-ceeEE-----Ee-ecCCCceEEEEE
Q 044932 629 VSIVVEMDRILRPGGWAIVRD----KVEILDPLEGILRSL-HWEIR-----MT-YAQDKEGILCAQ 683 (689)
Q Consensus 629 ~~illEmDRILRP~G~~iirD----~~~~l~~v~~i~~~l-rW~~~-----~~-~~~~~E~iL~~~ 683 (689)
..||-++=|.|||||.++... ..+-...|..++... .|+.. +. ...+.+++++|.
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEE
Confidence 467888889999999988663 223334444444332 34322 11 112457888874
No 419
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=40.21 E-value=1.2e+02 Score=32.62 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=51.1
Q ss_pred CCeEEEECCcc-chhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC------CCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KE-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN------RRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt------~~LPFpD~SFDlVh 377 (689)
..+||=+|||. |.++..++. .. |++++.+ ...++++.+.|....+..... .++ .....+|+|+
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~-----~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~vi 250 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDID-----DRKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGADVVI 250 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCCCEEE
Confidence 46788888742 233333433 22 6666544 346777777776433321110 001 1224589887
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
-. .- . ...+.+..+.||+||.+++....
T Consensus 251 d~--~g----~-~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 251 DA--VG----R-PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred EC--CC----C-HHHHHHHHHHhccCCEEEEECCC
Confidence 32 11 1 14678888999999999987643
No 420
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=39.87 E-value=24 Score=38.93 Aligned_cols=130 Identities=14% Similarity=0.122 Sum_probs=71.1
Q ss_pred ccccceecc--CceeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHH-HhhcC---CeEEEEcC
Q 044932 264 KKHNWLVES--GEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVA-SLLAK---EVLTLTVG 337 (689)
Q Consensus 264 ~~q~W~~~~--g~~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa-~La~~---~V~gmDIs 337 (689)
+...|+..- |=...|..--+||..|-..=...+..+-. .+..|.|+=+|.|.|+. .|... .|.+.+..
T Consensus 154 Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc------~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwN 227 (351)
T KOG1227|consen 154 GDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWN 227 (351)
T ss_pred ccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc------ccchhhhhhcccceEEeehhhccCccEEEEEecC
Confidence 344687553 33444556667888776533333433322 24689999999999987 66654 48999998
Q ss_pred CcccHHHHHHHHHHcCCCcEE-ecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcE
Q 044932 338 LKDDLVDLAQVALERGFPAVV-SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGY 405 (689)
Q Consensus 338 p~D~seamlq~A~eRGL~~i~-~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~ 405 (689)
|-.+ ++...-|...++.... ...+..+.|-++.+.|-|... +++ .-+.--.-.-.+|||.|-
T Consensus 228 p~sv-EaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG--LlP---Sse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 228 PWSV-EALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG--LLP---SSEQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHH-HHHHHHHHhcchHHHHHhhhccccccCccccchheeec--ccc---ccccchHHHHHHhhhcCC
Confidence 8421 2333333323322111 122335666677888877542 222 111222234567888554
No 421
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=39.82 E-value=1.3e+02 Score=30.49 Aligned_cols=89 Identities=16% Similarity=0.038 Sum_probs=48.2
Q ss_pred CCeEEEECCcc-chhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KE-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+||=.|||. |..+..++. .. |++++.+ ......+.+.|... .......-....+.+|+|+... ..
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~-----~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~~~-~~ 169 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPD-----AARRELAEALGPAD--PVAADTADEIGGRGADVVIEAS-GS 169 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCC-----HHHHHHHHHcCCCc--cccccchhhhcCCCCCEEEEcc-CC
Confidence 45777778753 333333332 23 6665533 34556777666211 1111110011345689887421 11
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
...+.+..+.|+++|.++....
T Consensus 170 ------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 170 ------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ------hHHHHHHHHHhcCCcEEEEEec
Confidence 2477889999999999987653
No 422
>PHA01634 hypothetical protein
Probab=38.69 E-value=41 Score=33.14 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=23.9
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGL 338 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp 338 (689)
..++|||||++.|.-+.+++-+ .|+++..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 3689999999999988887644 377776554
No 423
>PLN03075 nicotianamine synthase; Provisional
Probab=38.61 E-value=18 Score=39.28 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=68.8
Q ss_pred CeeEEeecCCcchhHHHHhcc----CCceEEEeccCCCCCch--hhh-hccccch----hhccccCCCCCCCccchhhcc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQ----QKIWVMNVVPVHAPDTL--PVI-YDRGLVG----IYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~----~~vWVMNvvp~~~~~tL--~vI-~~RGLig----~yhdwce~f~typrTyDLlHa 614 (689)
.-+.|+|+++|-|++.|.+.. ...-|.|+=....-+.+ ..+ -+.||=. ..+|.-+.+ .....||+|=+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 458899999999888655432 22334343221111111 111 1233311 112333321 11367999887
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeCch---hhHHHHHH--HHhhcceeEEEeecCC---CceEEEEEec
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV---EILDPLEG--ILRSLHWEIRMTYAQD---KEGILCAQKT 685 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~---~~l~~v~~--i~~~lrW~~~~~~~~~---~E~iL~~~K~ 685 (689)
. .+-.+. +-. ...+|-.+=|.|||||++++|--- .+|..+=. ..+ .|++-...|-. -..++|++|.
T Consensus 202 ~-ALi~~d-k~~-k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 202 A-ALVGMD-KEE-KVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVIIARKP 275 (296)
T ss_pred e-cccccc-ccc-HHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEEEEee
Confidence 7 333221 112 245777888999999999999511 12222111 112 67765544433 2468888885
No 424
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=38.60 E-value=65 Score=34.09 Aligned_cols=68 Identities=19% Similarity=0.070 Sum_probs=33.2
Q ss_pred CeEEEECCccchhH--HHhhcCCeEEEEcCCcccHHHHHHHHHHc---CCC--------cEEecCCC-CCCCCCCCCcce
Q 044932 310 RVVLEIGSADLSFV--ASLLAKEVLTLTVGLKDDLVDLAQVALER---GFP--------AVVSPLGN-RRLPFPSGVFDA 375 (689)
Q Consensus 310 R~VLDVGCGtGsfa--a~La~~~V~gmDIsp~D~seamlq~A~eR---GL~--------~i~~~~dt-~~LPFpD~SFDl 375 (689)
.+|||.=||-|+=+ ++.++..|+++.-+|.. ...++.+++| +.. ..+...+. .-|+.++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvi--a~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVI--AALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHH--HHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHH--HHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999733 33346679999988852 2444444333 111 11222332 235567899999
Q ss_pred EEec
Q 044932 376 IHCD 379 (689)
Q Consensus 376 Vhcs 379 (689)
|.+-
T Consensus 155 VY~D 158 (234)
T PF04445_consen 155 VYFD 158 (234)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9874
No 425
>PLN02476 O-methyltransferase
Probab=38.19 E-value=30 Score=37.27 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCeeEEeecCCcchhHHHHhcc----CCceEEEeccCCCC-Cch----hhhhccccc-------hhhccccCCC--CCCC
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQ----QKIWVMNVVPVHAP-DTL----PVIYDRGLV-------GIYHDWCESF--GTYP 606 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~----~~vWVMNvvp~~~~-~tL----~vI~~RGLi-------g~yhdwce~f--~typ 606 (689)
..-++|+++++++|.++.+|.. ... |+-++.. ..+ ..+-.-|+- |-..+.-..+ ...+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~----V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGC----LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCE----EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 3578999999999999887754 211 2222221 111 222223321 1111111111 1123
Q ss_pred ccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh---h---------HHHHHH----HHhhcceeEEE
Q 044932 607 RSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE---I---------LDPLEG----ILRSLHWEIRM 670 (689)
Q Consensus 607 rTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~---~---------l~~v~~----i~~~lrW~~~~ 670 (689)
.+||+|=.++-=..| ..++-..=+.|||||.+++++..- + ...++. |...=++++.+
T Consensus 193 ~~FD~VFIDa~K~~Y-------~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~l 265 (278)
T PLN02476 193 SSYDFAFVDADKRMY-------QDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISM 265 (278)
T ss_pred CCCCEEEECCCHHHH-------HHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 567776554421111 122223347899999999984211 1 112333 34455677766
Q ss_pred eecCCCceEEEEEec
Q 044932 671 TYAQDKEGILCAQKT 685 (689)
Q Consensus 671 ~~~~~~E~iL~~~K~ 685 (689)
.- -.+++++++|.
T Consensus 266 lP--igDGl~i~~K~ 278 (278)
T PLN02476 266 VP--IGDGMTICRKR 278 (278)
T ss_pred EE--eCCeeEEEEEC
Confidence 52 23689999884
No 426
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.14 E-value=17 Score=44.83 Aligned_cols=14 Identities=14% Similarity=0.155 Sum_probs=8.1
Q ss_pred cccccccCccccee
Q 044932 135 VNGETEGDVDLVQQ 148 (689)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (689)
.|.|..+|||+...
T Consensus 1461 d~~d~~~D~df~~e 1474 (1516)
T KOG1832|consen 1461 DEADILIDGDFMEE 1474 (1516)
T ss_pred ccccCCCChHHHHH
Confidence 44555666666653
No 427
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=37.99 E-value=1e+02 Score=31.90 Aligned_cols=89 Identities=20% Similarity=0.056 Sum_probs=50.0
Q ss_pred CCeEEEECCcc-chhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC----CCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KE-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN----RRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt----~~LPFpD~SFDlVhcs 379 (689)
..+||=+|+|. |.+++.++. .. |++++.+ +..+++|.+.|....+...+. ..+ .....||+|+-.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~ 194 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPS-----PDRRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALEF 194 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEEC
Confidence 45788888752 233333432 23 6666544 345677777775433221100 011 122468988742
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.. - ...+.+..+.|+|+|.+++..
T Consensus 195 ~G-~------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 195 SG-A------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CC-C------hHHHHHHHHHhcCCCEEEEec
Confidence 11 1 257888999999999999866
No 428
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=37.74 E-value=51 Score=36.11 Aligned_cols=129 Identities=21% Similarity=0.259 Sum_probs=63.8
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----cccchhhccccCCCCCCC--ccchhhcccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGLVGIYHDWCESFGTYP--RSYDLLHADHLF 618 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGLig~yhdwce~f~typ--rTyDLlHa~~lf 618 (689)
.-+||+|.++|.|=+|-|......= -|+-++- |..+.+-.+ -|+--+-|.=+-...+.| +.||+|=|+=|=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 4689999999999988777654311 0222221 111111000 000000011111112222 478887665322
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeCchh-hHHHHHHHHhhcceeEEEeecCCCceEEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE-ILDPLEGILRSLHWEIRMTYAQDKEGILCAQK 684 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD~~~-~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K 684 (689)
.. +..+.=++=|.|+|||++|+.--.+ -.++|...+.+-.|.+.-+-. ..|.+.+.-|
T Consensus 240 ~v-------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~-~~eW~~i~~k 298 (300)
T COG2264 240 EV-------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE-REEWVAIVGK 298 (300)
T ss_pred HH-------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe-cCCEEEEEEE
Confidence 21 1223345679999999999985322 345555555555676644322 2466555444
No 429
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=37.29 E-value=14 Score=37.83 Aligned_cols=21 Identities=24% Similarity=-0.162 Sum_probs=18.9
Q ss_pred eEEeecCCcchhHHHHhccCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQK 568 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~ 568 (689)
..|+|..+|.|-.|..|.++.
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G 56 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQG 56 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCC
Confidence 479999999999999999875
No 430
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=37.26 E-value=99 Score=32.60 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=45.1
Q ss_pred CeEEEECCc-cchhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 310 RVVLEIGSA-DLSFVASLLA---KE-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 310 R~VLDVGCG-tGsfaa~La~---~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
.+||=+||| .|.++..++. .. |.++|.. ...++.|....+ .+.... ....||+|+-.--.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~-----~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~G~-- 210 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN-----PRRRDGATGYEV------LDPEKD--PRRDYRAIYDASGD-- 210 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHhhhhccc------cChhhc--cCCCCCEEEECCCC--
Confidence 467777875 3445555553 23 3344433 234555543221 121110 22468998743111
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
...+....+.|+|||.+++...
T Consensus 211 -----~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 -----PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----HHHHHHHHHhhhcCcEEEEEee
Confidence 1467888999999999998754
No 431
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=37.07 E-value=1.1e+02 Score=33.03 Aligned_cols=91 Identities=16% Similarity=0.044 Sum_probs=50.8
Q ss_pred CCeEEEECCcc-chhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC---CCC-CCCCCCcceEEec
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN---RRL-PFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt---~~L-PFpD~SFDlVhcs 379 (689)
..+||=+|+|. |.++..++. . .|++++.+ +..+++|.+.|....+...+. ..+ .+..+.+|+|+-.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLN-----EDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCC-----HHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEEC
Confidence 35677788752 233444442 3 36666654 356777777776443321110 000 0112368988742
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.. . ...+....+.|++||.+++...
T Consensus 267 ~G-~------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 267 AG-S------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CC-C------hHHHHHHHHHHhcCCEEEEEcc
Confidence 11 1 1578888999999999988654
No 432
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=36.76 E-value=39 Score=37.99 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=33.3
Q ss_pred CCCCCcceEEecccccccccc--HHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWHAH--GGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d--~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.++++||.++.+ .++.|..+ ....+.+|.|+++|||++++..
T Consensus 291 ~~~~s~~~~vL~-D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 291 LPPGSFDRFVLS-DHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCCCeeEEEec-chhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 467899998765 45567643 3578899999999999999985
No 433
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=36.50 E-value=76 Score=36.88 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCeEEEECCccch--hHHHhhcC----CeEEEEcCCcccHHHHHHHHHH--cC-----CCcEEe-cCCCCCCCCCC-CCc
Q 044932 309 IRVVLEIGSADLS--FVASLLAK----EVLTLTVGLKDDLVDLAQVALE--RG-----FPAVVS-PLGNRRLPFPS-GVF 373 (689)
Q Consensus 309 ~R~VLDVGCGtGs--faa~La~~----~V~gmDIsp~D~seamlq~A~e--RG-----L~~i~~-~~dt~~LPFpD-~SF 373 (689)
...++|+|.|.|. +++.++.+ .+..||-+ .+|+.++.. |+ -+.+-. ++--..+|-+. +.|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs-----~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRS-----RAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccc-----hHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccce
Confidence 4678899988775 44444433 24444443 334443322 22 111111 22235677554 459
Q ss_pred ceEEeccccccccc--cHHHHHHH-HHhccCCCcEEEEEcCCC
Q 044932 374 DAIHCDGCSITWHA--HGGKLLLE-MNRILRPSGYFILSTKHD 413 (689)
Q Consensus 374 DlVhcs~cli~W~~--d~~~aL~E-I~RVLRPGG~fVIsdp~~ 413 (689)
|+|+|++.+.+... .......+ ..+..|+||++++..+..
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999875544221 12233333 456789999999987653
No 434
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=35.29 E-value=30 Score=36.20 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=63.2
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCC-----CCchhhhhcccc--chhh-ccccCCCCCC-Cc-cchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA-----PDTLPVIYDRGL--VGIY-HDWCESFGTY-PR-SYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~-----~~tL~vI~~RGL--ig~y-hdwce~f~ty-pr-TyDLlHa~~ 616 (689)
..+++++.|.|.|-++|+..+ =+ |++=+.- -.-|.-|-+.|| |-++ ||-=+-|..+ |. +.|-|+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i-- 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI-- 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--
Confidence 469999999999999998643 11 2221111 123344556666 3333 2222223333 22 5555543
Q ss_pred ccc-------cccCCcCCccceeeeeccccccCcEEEEe-CchhhHHH-HHHHHhh
Q 044932 617 LFS-------RLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDP-LEGILRS 663 (689)
Q Consensus 617 lfs-------~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~-v~~i~~~ 663 (689)
.|. +.+.|=-. ...|-++-|+|+|||.+.+. |..++.+. +...+..
T Consensus 126 ~FPDPWpKkRH~KRRl~~-~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQ-PEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred ECCCCCCCccccccccCC-HHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 232 22344332 45677899999999999998 55556665 5555433
No 435
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=35.12 E-value=46 Score=36.21 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=32.7
Q ss_pred ecCCCCcccchhHHHHHHHHHhhc-ccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcC
Q 044932 277 TFPQNQSEFKGGVLHYLESIEEMV-PDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVG 337 (689)
Q Consensus 277 ~Fpgggt~F~~ga~~Yid~L~~~L-p~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIs 337 (689)
.+.||-..|.-.++. ++.+..-+ ..+.+ .+.+|||+|||.|.-+..... ..+...|++
T Consensus 87 vyEGg~k~wecS~dl-~~~l~~e~~~~~~~--~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~n 148 (282)
T KOG2920|consen 87 VYEGGLKLWECSVDL-LPYLKEEIGAQMSF--SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFN 148 (282)
T ss_pred eeecceEEeecHHHH-HHHHHHHhhhheEe--cCceeEecCCcccccchhhhhhccceeeeEecc
Confidence 567777788766653 22333221 12222 467999999999975543332 234444544
No 436
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=35.08 E-value=24 Score=38.77 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=60.6
Q ss_pred eeEEeecCCcchhHHHHhccCCc-eEEEeccCCCCCchhhhhccccchhhcc--c----cCCCCCCCccchhhccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKI-WVMNVVPVHAPDTLPVIYDRGLVGIYHD--W----CESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~v-WVMNvvp~~~~~tL~vI~~RGLig~yhd--w----ce~f~typrTyDLlHa~~lfs 619 (689)
=|.|+|.+++-|-|.=.|....- -|.=+=|..- -.+.+-+-+-++|.-.. . =|.++. ..+||+|=+.|||=
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 46799999999999988876542 3333323211 12233333344432110 1 134555 78999999999986
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEe
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+..+ ..+.|.++=..|||||-+|+.
T Consensus 194 Hrr~----Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 HRRS----PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ccCC----HHHHHHHHHHhhCCCCEEEEE
Confidence 5433 245688889999999999965
No 437
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=34.88 E-value=58 Score=31.70 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=22.8
Q ss_pred CCCeEEEECCccchh--HHHhhcCCeEEEEcCCc
Q 044932 308 NIRVVLEIGSADLSF--VASLLAKEVLTLTVGLK 339 (689)
Q Consensus 308 ~~R~VLDVGCGtGsf--aa~La~~~V~gmDIsp~ 339 (689)
.+..|||-=||+|+. ++..+++..+|+++++.
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred cceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 457999999999975 45556778999999863
No 438
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=34.15 E-value=97 Score=36.34 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=55.8
Q ss_pred CCeEEEECCccchhHHH-hh---cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCC---------CCCC--C------
Q 044932 309 IRVVLEIGSADLSFVAS-LL---AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG---------NRRL--P------ 367 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~-La---~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d---------t~~L--P------ 367 (689)
..+||=+|||.-+.++. ++ +..|+++|..+ ..++.+..-|...+..... +..+ +
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~-----~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP-----EVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 46899999998754432 22 33577777654 3456666555432111100 0000 0
Q ss_pred --CC--CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEE
Q 044932 368 --FP--SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 368 --Fp--D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
++ -..+|+|++. ++++....|..+..|+-+.+|||+.++
T Consensus 239 ~~~~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 239 ELFAAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 11 2569999865 456644455568899999999999877
No 439
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=33.86 E-value=17 Score=38.62 Aligned_cols=93 Identities=18% Similarity=0.341 Sum_probs=58.7
Q ss_pred EeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccccc-hhhccccCC----CCCCCccchhhccccccccccC
Q 044932 550 VMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLV-GIYHDWCES----FGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 550 vmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLi-g~yhdwce~----f~typrTyDLlHa~~lfs~~~~ 623 (689)
|+|.++|-|-++-.|...+ -||+-+++. -.+.+.-.+.+. |++-||=.. +-.==-+||.|=+..++-++.+
T Consensus 63 vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d 139 (243)
T COG2227 63 VLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD 139 (243)
T ss_pred EEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC
Confidence 9999999999999999887 467766653 333333322222 222222110 0000036677766666666543
Q ss_pred CcCCccceeeeeccccccCcEEEEeC
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD 649 (689)
...+|....+.|||||.++++.
T Consensus 140 ----p~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 140 ----PESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred ----HHHHHHHHHHHcCCCcEEEEec
Confidence 3557888999999999999985
No 440
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=33.74 E-value=1.2e+02 Score=33.33 Aligned_cols=91 Identities=13% Similarity=0.043 Sum_probs=47.9
Q ss_pred CCeEEEECCc-cchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC-CCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSA-DLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-PFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCG-tGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-PFpD~SFDlVhcs~cli 383 (689)
..+||=.||| .|.++..++. ..|++++.++ +...+++.+.|....+...+...+ ... +.+|+|+-.- .
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~----~~~~~~a~~lGa~~~i~~~~~~~v~~~~-~~~D~vid~~-G- 251 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS----EKEREAIDRLGADSFLVTTDSQKMKEAV-GTMDFIIDTV-S- 251 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh----HHhHHHHHhCCCcEEEcCcCHHHHHHhh-CCCcEEEECC-C-
Confidence 4677778875 2223333432 3466665443 233556656665433321110000 011 2488887321 0
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
...++.+..+.|++||.++....
T Consensus 252 -----~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 -----AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----cHHHHHHHHHhhcCCCEEEEEcc
Confidence 11467888999999999987653
No 441
>PRK10742 putative methyltransferase; Provisional
Probab=33.59 E-value=84 Score=33.67 Aligned_cols=40 Identities=18% Similarity=0.015 Sum_probs=29.1
Q ss_pred eEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc
Q 044932 311 VVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR 352 (689)
+|||+=+|+|..+..++.+ .|+.++-+|. ....++..+++
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~--vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHH
Confidence 8999999999988777755 4888888874 23445544444
No 442
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=33.58 E-value=7.9 Score=39.39 Aligned_cols=55 Identities=15% Similarity=0.343 Sum_probs=30.4
Q ss_pred hccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh
Q 044932 595 YHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE 652 (689)
Q Consensus 595 yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~ 652 (689)
+||.++ ...++.-||||=+-.||.-....-. ..|+=-+-+.|+|||++++-....
T Consensus 124 ~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~--~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 124 RHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQ--QRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp E--TT--S------EEEEEE-SSGGGS-HHHH--HHHHHHHGGGEEEEEEEEE-TT--
T ss_pred ecccCC-CCcccCCccEEEecCEEEEeCHHHH--HHHHHHHHHHcCCCCEEEEecCcc
Confidence 466666 4556788999999999875543222 346666789999999999976543
No 443
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=33.57 E-value=10 Score=39.79 Aligned_cols=43 Identities=33% Similarity=0.574 Sum_probs=29.8
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE 652 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~ 652 (689)
.-+||-|-..-++=...+ ..-+|=|+-|||||||.+|+=+.+.
T Consensus 143 d~s~DtVV~TlvLCSve~----~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 143 DGSYDTVVCTLVLCSVED----PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred cCCeeeEEEEEEEeccCC----HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 457887765554432222 2447889999999999999986554
No 444
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=33.53 E-value=15 Score=39.32 Aligned_cols=130 Identities=22% Similarity=0.267 Sum_probs=75.4
Q ss_pred CeeEEeecCCcchhHHHHhccCCc-eEE------EeccCCCCCchhhhhccccch-----hhccccCCCCCCCcc-chh-
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKI-WVM------NVVPVHAPDTLPVIYDRGLVG-----IYHDWCESFGTYPRS-YDL- 611 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~v-WVM------Nvvp~~~~~tL~vI~~RGLig-----~yhdwce~f~typrT-yDL- 611 (689)
+=-+|+|.-.|+|=||+.-.++.- -|. ||.-..+-| =+.|||.- +.-|.-|...+|+-. +|.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lN----PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLN----PWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccC----CCCccccccccEEecccHHHHHhcCCccccceE
Confidence 345799999999999987766553 332 222211111 13444432 244556666677765 885
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEe--------CchhhHHHHHHHHhhcceeEEEeecCCCceE-EEE
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR--------DKVEILDPLEGILRSLHWEIRMTYAQDKEGI-LCA 682 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir--------D~~~~l~~v~~i~~~lrW~~~~~~~~~~E~i-L~~ 682 (689)
||---=||.-...-. +..--||-|||||||-+.-= --.++...|.+-+++.-..+--. ..|.+ ++|
T Consensus 210 iHDPPRfS~AgeLYs--eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~---~~~~~gv~A 284 (287)
T COG2521 210 IHDPPRFSLAGELYS--EEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK---VREALGVVA 284 (287)
T ss_pred eeCCCccchhhhHhH--HHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee---ehhccceEE
Confidence 576666765443333 34567999999999987632 12345555666666655553221 12333 666
Q ss_pred Ee
Q 044932 683 QK 684 (689)
Q Consensus 683 ~K 684 (689)
+|
T Consensus 285 ~k 286 (287)
T COG2521 285 VK 286 (287)
T ss_pred ec
Confidence 66
No 445
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=33.20 E-value=1.8e+02 Score=30.51 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=49.7
Q ss_pred CCeEEEECCcc-chhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC---CCC--CCCCCCcceEEec
Q 044932 309 IRVVLEIGSAD-LSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN---RRL--PFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt---~~L--PFpD~SFDlVhcs 379 (689)
..+||-.|+|. |.+++.|+.. .|+++.-+ .....++.+.|....+..-.. ..+ -.+...+|+++..
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s-----~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~ 234 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDID-----DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDA 234 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCC-----HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEEC
Confidence 45788888763 4455555543 34444322 345556666664332211100 001 0234568998743
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.. ....+.++.+.|+++|.++...
T Consensus 235 ~g-------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 235 TG-------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CC-------CHHHHHHHHHHHhcCCEEEEEc
Confidence 10 1257889999999999998764
No 446
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=33.03 E-value=1.5e+02 Score=31.15 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=49.6
Q ss_pred CCeEEEECCcc-chhHHHhh---cCC-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC--CCC-CC-CCCCcceEEec
Q 044932 309 IRVVLEIGSAD-LSFVASLL---AKE-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN--RRL-PF-PSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La---~~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt--~~L-PF-pD~SFDlVhcs 379 (689)
..+||=+|+|. |.++..++ +.. |++++.+ +..++++.+.|....+..-+. ..+ .+ ....||+|+-.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~-----~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS-----PERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 45777788642 22333333 234 6666543 345677777776433321110 001 01 23469998732
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.. ....+.+..+.|+++|.+++...
T Consensus 239 ~g-------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG-------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 11 11456788899999999997654
No 447
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=33.02 E-value=1.1e+02 Score=32.08 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=47.0
Q ss_pred CCeEEEECCc-cchhHHHhhc-C---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC------CCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSA-DLSFVASLLA-K---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN------RRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCG-tGsfaa~La~-~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt------~~LPFpD~SFDlVh 377 (689)
..+||-.|+| .|..+..++. . .|++++.+ ....+.+.+.|....+..-.. .++ .+.+.||+++
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~-----~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vl 241 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSN-----PERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVI 241 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEE
Confidence 4577777764 2444444443 1 34455332 234455555553222211100 011 1336799887
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
-.. . ....+.++.+.|+++|.++...
T Consensus 242 d~~-g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 242 EAV-G------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred Ecc-C------CHHHHHHHHHHhhcCCEEEEEc
Confidence 421 1 1157889999999999998765
No 448
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=32.80 E-value=12 Score=40.44 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=34.7
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE 652 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~ 652 (689)
+..||+|-+-.+|...... . ...|+-.+-+.|+|||++++--...
T Consensus 221 ~~~fD~I~cRNvliyF~~~-~-~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKT-T-QERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred CCCcceeeHhhHHhcCCHH-H-HHHHHHHHHHHhCCCcEEEEeCccc
Confidence 4789999999998765432 2 2468889999999999998876443
No 449
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=32.47 E-value=1.5e+02 Score=28.25 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeC
Q 044932 391 KLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 391 ~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
.+|..|.|+++|||.|.-..... .++..+...||.+.....- .+.-.+.+..||
T Consensus 71 e~~~~l~~~~~~~~~l~Tys~a~------~Vr~~L~~aGF~v~~~~g~-g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYSSAG------AVRRALQQAGFEVEKVPGF-GRKREMLRAVKP 124 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES--BH------HHHHHHHHCTEEEEEEE-S-TTSSEEEEEEC-
T ss_pred HHHHHHHHHhCCCcEEEEeechH------HHHHHHHHcCCEEEEcCCC-CCcchheEEEcC
Confidence 79999999999999887655432 3667788999998655432 222335555553
No 450
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=32.30 E-value=66 Score=33.09 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=70.5
Q ss_pred hcccCCCCCCeeEEeecCCcchhHHHHhc--cCCceEEEeccCCCCCchhhhhccccchhhccccCCCCCCCccc-----
Q 044932 537 LTGLGIDWSKIRNVMDMKSIYGGFAAALA--QQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSY----- 609 (689)
Q Consensus 537 ~~~l~~~~~~iRNvmDMna~~GgFAAal~--~~~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTy----- 609 (689)
+..|.+.++. -++|.+||+|+.+--+. ...- -|+-++.. -.-+.+...-|++|. +++-.
T Consensus 27 ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~---~v~AIe~~--------~~a~~~~~~N~~~fg-~~n~~vv~g~ 92 (187)
T COG2242 27 LSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSG---RVIAIERD--------EEALELIERNAARFG-VDNLEVVEGD 92 (187)
T ss_pred HHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCc---eEEEEecC--------HHHHHHHHHHHHHhC-CCcEEEEecc
Confidence 4557777777 59999999999764443 2211 12222221 112334444566666 55521
Q ss_pred ------hhhccccccccccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcce-eE
Q 044932 610 ------DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHW-EI 668 (689)
Q Consensus 610 ------DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW-~~ 668 (689)
|+-+.+.+|-.-. -. ++.||--.-..|||||.+++. =+.+.+..+-...+.+.+ ++
T Consensus 93 Ap~~L~~~~~~daiFIGGg--~~-i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei 156 (187)
T COG2242 93 APEALPDLPSPDAIFIGGG--GN-IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREI 156 (187)
T ss_pred chHhhcCCCCCCEEEECCC--CC-HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceE
Confidence 2334455665433 44 366777777889999999998 466677777777788888 54
No 451
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=32.14 E-value=2.2e+02 Score=31.62 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCeEEEECCccch--hHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCCCC---CCCcceEEecc
Q 044932 309 IRVVLEIGSADLS--FVASLLA--KEVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLPFP---SGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGs--faa~La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LPFp---D~SFDlVhcs~ 380 (689)
++.|+=|| -.-. ++++|.+ ..|.++||+..-+ .-.-.+|.+-|+..+ ..+.|. +-||| .+.||+.+.--
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~~ie~~~~Dl-r~plpe~~~~kFDvfiTDP 229 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYNNIEAFVFDL-RNPLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCccchhheeehh-cccChHHHHhhCCeeecCc
Confidence 46788888 2222 4445544 3588899875422 111234556676532 223342 34555 47899876421
Q ss_pred cccccc-ccHHHHHHHHHhccCCC---cEEEEEcCCCchhHHHHHHH-HHHhcceeEE
Q 044932 381 CSITWH-AHGGKLLLEMNRILRPS---GYFILSTKHDSIEEEEALTT-LTASICWNIL 433 (689)
Q Consensus 381 cli~W~-~d~~~aL~EI~RVLRPG---G~fVIsdp~~~le~~~~ie~-La~~l~W~~v 433 (689)
+-+ .....+|.-=-..|+-- |||.|+..+..+..|.++++ +...|++-..
T Consensus 230 ---peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVIT 284 (354)
T COG1568 230 ---PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVIT 284 (354)
T ss_pred ---hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeH
Confidence 000 01112222222345554 99999999988999999999 7888888654
No 452
>PRK13699 putative methylase; Provisional
Probab=31.73 E-value=89 Score=32.38 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=25.2
Q ss_pred CCCeEEEECCccchhH--HHhhcCCeEEEEcCCc
Q 044932 308 NIRVVLEIGSADLSFV--ASLLAKEVLTLTVGLK 339 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~~~V~gmDIsp~ 339 (689)
.+..|||-=||+|+.+ +...++..+|+++++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~ 196 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQ 196 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHH
Confidence 3568999999999854 4455778999999874
No 453
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=31.62 E-value=2.4e+02 Score=29.54 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=51.2
Q ss_pred CCeEEEECC--ccchhHHHhhcC-C--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC-----CCCCCCcceEEe
Q 044932 309 IRVVLEIGS--ADLSFVASLLAK-E--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-----PFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGC--GtGsfaa~La~~-~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-----PFpD~SFDlVhc 378 (689)
..+||=.|. |.|.++..++.. + |++++-+ ....+++.+.|....+..-+...+ ....+.||+|+-
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s-----~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 467888885 456666666542 3 5544432 345677776676433321110000 012246888874
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.. ....+.+..++|+|||.++....
T Consensus 214 ~~--------G~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 214 NV--------GGEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CC--------CHHHHHHHHHHhCcCcEEEEecc
Confidence 21 12456889999999999997653
No 454
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=31.42 E-value=1.8e+02 Score=31.39 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCeEEEECC--ccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHH-HcCCCcEEecCCC----CCC-CCCCCCcceEE
Q 044932 309 IRVVLEIGS--ADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVAL-ERGFPAVVSPLGN----RRL-PFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGC--GtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~-eRGL~~i~~~~dt----~~L-PFpD~SFDlVh 377 (689)
..+||=.|+ |.|.++..++.. .|++++.+ ...++.++ +.|....+..-+. ..+ .+..+.+|+|+
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~-----~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS-----SQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 468888888 366666666542 35555433 23455555 4565433321100 000 01124689887
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
-.- ....+....+.|++||.+++...
T Consensus 234 d~v--------G~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 234 DNV--------GGDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred ECC--------CHHHHHHHHHHhccCCEEEEECc
Confidence 421 12577889999999999987653
No 455
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.18 E-value=98 Score=34.66 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=56.0
Q ss_pred CCCeEEEECCccchhHHHhh-----cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC---------CCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLL-----AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL---------PFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La-----~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L---------PFpD~SF 373 (689)
.+.+||=+|||+=.+..-|. ...|.++|+++ ..++.|++-|...+........+ -+-...|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~-----~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA-----NRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH-----HHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 34689999999654432222 23588888765 67899988776555432221101 1233457
Q ss_pred ceEE-eccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 374 DAIH-CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 374 DlVh-cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|..+ |+.. + ..+.-.-..||+||.+++.+-
T Consensus 244 d~~~dCsG~--~------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 244 DVTFDCSGA--E------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred CeEEEccCc--h------HHHHHHHHHhccCCEEEEecc
Confidence 7776 4431 1 455556778999999888764
No 456
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=30.30 E-value=88 Score=35.80 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCCeEEEECCccchhHHHhh-cCC--eEEEEcC
Q 044932 308 NIRVVLEIGSADLSFVASLL-AKE--VLTLTVG 337 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La-~~~--V~gmDIs 337 (689)
++..|.|+|.|.|.++..|. .++ |.++|-+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 57899999999999887765 344 5555543
No 457
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=29.87 E-value=62 Score=38.92 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=23.7
Q ss_pred CCCeEEEECCccchhHH---HhhcC--CeEEEEcCCc
Q 044932 308 NIRVVLEIGSADLSFVA---SLLAK--EVLTLTVGLK 339 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa---~La~~--~V~gmDIsp~ 339 (689)
..+.|||+||-.|+|.. ..... -|+|||+.|.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 35789999999999753 33332 2889999985
No 458
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=29.87 E-value=3.2e+02 Score=29.72 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=59.6
Q ss_pred CCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC---CCCCCCcceEEecc-
Q 044932 309 IRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL---PFPSGVFDAIHCDG- 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L---PFpD~SFDlVhcs~- 380 (689)
..+++|+=||.|.+...|...+ +.+++++|. +.... +...+ ......+...+ .++...+|+|+.+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~----a~~ty--~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPP----AVATY--KANFPHGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHH----HHHHH--HHhCCCCceeechHhhcChhhccccCCCEEEeCCC
Confidence 3579999999998766555543 677888763 22222 22222 11111122111 12212899998531
Q ss_pred c---ccc----ccccH-H---HHHHHHHhccCCCcEEEEEcCCCchh----HHHHHHHHHHhccee
Q 044932 381 C---SIT----WHAHG-G---KLLLEMNRILRPSGYFILSTKHDSIE----EEEALTTLTASICWN 431 (689)
Q Consensus 381 c---li~----W~~d~-~---~aL~EI~RVLRPGG~fVIsdp~~~le----~~~~ie~La~~l~W~ 431 (689)
| ++- ...|+ . ..+.++-..++| -+|++--.+.++. ..+.+...++.+++.
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 1 111 11122 2 344566667788 4444443343333 345677777777775
No 459
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=29.68 E-value=2.4e+02 Score=32.22 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=51.7
Q ss_pred CCCeEEEECCcc-chhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSAD-LSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGt-Gsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..++|+=+|||. |...+.++ +..|+++|++|. .+..|..-|.... ... .. + ..+|+|+..-.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~-----R~~~A~~~G~~~~--~~~-e~--v--~~aDVVI~atG-- 266 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI-----CALQAAMEGYEVM--TME-EA--V--KEGDIFVTTTG-- 266 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh-----hHHHHHhcCCEEc--cHH-HH--H--cCCCEEEECCC--
Confidence 357999999996 33333222 345888887762 4556666665221 111 11 1 35799885421
Q ss_pred cccccHHHHHH-HHHhccCCCcEEEEEcCC
Q 044932 384 TWHAHGGKLLL-EMNRILRPSGYFILSTKH 412 (689)
Q Consensus 384 ~W~~d~~~aL~-EI~RVLRPGG~fVIsdp~ 412 (689)
.. .++. +..+.+|+||+++.....
T Consensus 267 ----~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 ----NK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ----CH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 12 3444 568999999999888754
No 460
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=29.41 E-value=48 Score=33.47 Aligned_cols=136 Identities=19% Similarity=0.239 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcch--hHHHHhccCCceEEEeccCCCC--Cch-hhhhccccc--hhh
Q 044932 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYG--GFAAALAQQKIWVMNVVPVHAP--DTL-PVIYDRGLV--GIY 595 (689)
Q Consensus 523 ~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~G--gFAAal~~~~vWVMNvvp~~~~--~tL-~vI~~RGLi--g~y 595 (689)
...+.|.+++-.|..-.--++.... +++|+++|-| |..-|+.....=|. .|=.... +-| -++-.=||- =++
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~-LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVT-LVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEE-EEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCcEE-EEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 3457899998765532112222222 5999998876 44444444332111 1211111 223 345555663 356
Q ss_pred ccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh---hHHHHHHHHhhcceeEE
Q 044932 596 HDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE---ILDPLEGILRSLHWEIR 669 (689)
Q Consensus 596 hdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~---~l~~v~~i~~~lrW~~~ 669 (689)
|.-.|. ..++..||+|=|--+-+ +..++--+-+.|+|||.+++---.. -+..++.....+.++..
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred Eeeecc-cccCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 666666 56999999986544432 1223333456799999988875444 44445555555666543
No 461
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.51 E-value=2.7e+02 Score=29.56 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=49.0
Q ss_pred CCeEEEECCc-cchhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC-----CC-CCCCcceEE
Q 044932 309 IRVVLEIGSA-DLSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-----PF-PSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCG-tGsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-----PF-pD~SFDlVh 377 (689)
..+||=.|+| .|.+++.++. . .|++++.+ ......+.+.|....+...+ ..+ .+ ....+|+|+
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~v~~~~-~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSR-----PNRVELAKEYGATDIVDYKN-GDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCceEecCCC-CCHHHHHHHHhCCCCCcEEE
Confidence 4677777865 2233344443 2 25555543 24556666666543332111 000 11 234689887
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.... ....+.++.+.|+++|.++...
T Consensus 241 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 241 IAGG-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEec
Confidence 4211 1257889999999999998754
No 462
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=28.38 E-value=54 Score=34.31 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCeeEEeecCCcchhHHHHhc----cCCceEEEeccCCC-C----Cchhhhhccccch---hh--ccccCCCC-CCCccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALA----QQKIWVMNVVPVHA-P----DTLPVIYDRGLVG---IY--HDWCESFG-TYPRSY 609 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~----~~~vWVMNvvp~~~-~----~tL~vI~~RGLig---~y--hdwce~f~-typrTy 609 (689)
..-++||..+++.|=-|..|. ++.. ++-++- + ..-..+-+-|+-. ++ -|+=+-++ ...-+|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~----l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~f 133 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGR----LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSF 133 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCe----EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCc
Confidence 467889999988874443332 2110 121211 1 1112333333222 22 37777777 477788
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEeC--------------chhhHHHHHHHHhhcceeEEEee--c
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD--------------KVEILDPLEGILRSLHWEIRMTY--A 673 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD--------------~~~~l~~v~~i~~~lrW~~~~~~--~ 673 (689)
|||-.+.==+.|.. .+=+.=+.|||||.+++++ ....+.+|+.....+.|+-+... -
T Consensus 134 DliFIDadK~~yp~-------~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l 206 (219)
T COG4122 134 DLVFIDADKADYPE-------YLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLL 206 (219)
T ss_pred cEEEEeCChhhCHH-------HHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEE
Confidence 88765543333321 1222234599999998874 11344446666665555433221 1
Q ss_pred CCCceEEEEEec
Q 044932 674 QDKEGILCAQKT 685 (689)
Q Consensus 674 ~~~E~iL~~~K~ 685 (689)
.-.++++++.|.
T Consensus 207 P~gDGl~v~~k~ 218 (219)
T COG4122 207 PLGDGLLLSRKR 218 (219)
T ss_pred ecCCceEEEeec
Confidence 234789999885
No 463
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=27.71 E-value=1.6e+02 Score=32.10 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCeEEEECCccchhHHHhhc----C----CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCCC---CCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLA----K----EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLPF---PSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~----~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LPF---pD~SFDlV 376 (689)
..+.+|+|.|+-.=++.|++ . ..+.+||+..-......+++.+. +++. .+..++-++++ |...=-++
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v-~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEV-NALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeE-eehhhhHHHHHhcccCCCeEEE
Confidence 57899999999876655543 2 35677887643322233333332 3332 23222222221 21222222
Q ss_pred Eecc-ccccccc-cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 377 HCDG-CSITWHA-HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 377 hcs~-cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
...+ .+=.+.+ +-..+|..+..+|+||-+|++..-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 1111 1111222 335688899999999999999853
No 464
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=27.43 E-value=17 Score=30.80 Aligned_cols=16 Identities=50% Similarity=1.059 Sum_probs=10.9
Q ss_pred hhccc-cchhhccccCC
Q 044932 586 IYDRG-LVGIYHDWCES 601 (689)
Q Consensus 586 I~~RG-Lig~yhdwce~ 601 (689)
|..-| =+|.||.|||.
T Consensus 50 ivlvgvdvgqfh~wceq 66 (68)
T PF13051_consen 50 IVLVGVDVGQFHEWCEQ 66 (68)
T ss_pred EEEEEecHHHHHHHHhh
Confidence 43344 26889999984
No 465
>PLN02740 Alcohol dehydrogenase-like
Probab=27.17 E-value=2.3e+02 Score=30.87 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=49.9
Q ss_pred CCeEEEECCcc-chhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC-----CCC-CCCCCCcceEE
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN-----RRL-PFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt-----~~L-PFpD~SFDlVh 377 (689)
..+||=+|||. |.++..++. . .|++++.++ ..++.|.+.|....+...+. ..+ .+..+.||+|+
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP-----EKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh-----HHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEE
Confidence 46788888752 223333332 2 366666543 46777777776443321110 000 01123689887
Q ss_pred eccccccccccHHHHHHHHHhccCCC-cEEEEEcC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPS-GYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPG-G~fVIsdp 411 (689)
-.-- ....+....+.|++| |.+++...
T Consensus 274 d~~G-------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG-------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ECCC-------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 4311 115778888899997 98887654
No 466
>PRK03612 spermidine synthase; Provisional
Probab=27.11 E-value=65 Score=37.43 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=60.8
Q ss_pred CeeEEeecCCcchhHHHHhccCC-ceEEEeccCCCC---------------------CchhhhhccccchhhccccCCCC
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHAP---------------------DTLPVIYDRGLVGIYHDWCESFG 603 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~~---------------------~tL~vI~~RGLig~yhdwce~f~ 603 (689)
+-++|+|+++|.|+.+..+.+.+ +=-+-+|=.+.. ..+.+|...|.- -+.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--------~l~ 368 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--------WLR 368 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--------HHH
Confidence 45789999999999987776543 111111211110 011222222211 122
Q ss_pred CCCccchhhccccccccccCC-cCC-ccceeeeeccccccCcEEEEeC-----chhhHHHHHHHHhhcceeEE
Q 044932 604 TYPRSYDLLHADHLFSRLKSR-CRQ-PVSIVVEMDRILRPGGWAIVRD-----KVEILDPLEGILRSLHWEIR 669 (689)
Q Consensus 604 typrTyDLlHa~~lfs~~~~~-c~~-~~~illEmDRILRP~G~~iirD-----~~~~l~~v~~i~~~lrW~~~ 669 (689)
..+++||+|-.+-- ...... ..+ -..++-.+=|+|+|||.+++.- ..+.+..+.+.++.....+.
T Consensus 369 ~~~~~fDvIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 369 KLAEKFDVIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred hCCCCCCEEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 35689999987732 211111 010 0123446679999999999953 34555666666666544443
No 467
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=26.80 E-value=1e+02 Score=34.01 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=36.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
+...+||.=-|.|+.+.++++. .|+|+|.+| .+++.|.++-- +| ++.|-++|..+
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~-----~a~~~a~~~l~------------~~-~~r~~~~~~~F 78 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDP-----EALERAKERLK------------KF-DDRFIFIHGNF 78 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-H-----HHHHHHHCCTC------------CC-CTTEEEEES-G
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCH-----HHHHHHHHHHh------------hc-cceEEEEeccH
Confidence 3468999999999999888753 488999876 46666654421 13 47888888654
No 468
>PLN02827 Alcohol dehydrogenase-like
Probab=25.87 E-value=2.6e+02 Score=30.54 Aligned_cols=91 Identities=12% Similarity=-0.003 Sum_probs=49.0
Q ss_pred CCeEEEECCcc-chhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC-CC----C-CCCCCCcceEE
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN-RR----L-PFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt-~~----L-PFpD~SFDlVh 377 (689)
..+||=.|+|. |.++..++. . .|++++.+ ...+++|.+.|....+..... .. + -+..+.||+|+
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~-----~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDIN-----PEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 46888888742 223333332 2 25555543 346677777776433321110 00 0 01123689887
Q ss_pred eccccccccccHHHHHHHHHhccCCC-cEEEEEcC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPS-GYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPG-G~fVIsdp 411 (689)
-.-. . ...+.+..++||+| |.+++...
T Consensus 269 d~~G-~------~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECVG-D------TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ECCC-C------hHHHHHHHHhhccCCCEEEEECC
Confidence 4211 1 14678889999999 99987653
No 469
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=24.21 E-value=1.2e+02 Score=33.38 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR 352 (689)
...++|.=||.|+.+.+++.. .|+|+|.+| .+++.|.++
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~-----~Al~~ak~~ 63 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP-----QAIAFAKER 63 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH-----HHHHHHHHH
Confidence 468999999999988877753 489999876 456666554
No 470
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=24.16 E-value=43 Score=37.49 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=59.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhccccc---hhhccccCCCCCC---Cccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGLV---GIYHDWCESFGTY---PRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGLi---g~yhdwce~f~ty---prTyDLlHa~~ 616 (689)
..|+|+.+|+|.|+..|...-- .|+-++.. ..+.. +-..|+- =+.-|..+.++.+ ..+||+|=.+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 3699999999999999976422 23333321 11110 1111211 0111222222222 23566653221
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEE
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~ 670 (689)
.|-.+...++-.+.+ |+|+|.+++.-++..+.+--.++..-.|....
T Consensus 371 ------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 371 ------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred ------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEE
Confidence 122211233333333 78999999998888887777666666676543
No 471
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=23.98 E-value=49 Score=36.13 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=41.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccc--c----c-hhhccc-cCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRG--L----V-GIYHDW-CESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RG--L----i-g~yhdw-ce~f~typrTyDLlHa~~lf 618 (689)
..|+|+.+|.|.++..|..... +|+-++-. +-|.+.-.|. + . +.-.++ +..+...+.+||+|=+.++|
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999987642 45555432 3443332321 0 0 011111 12233457889998777776
Q ss_pred cccc
Q 044932 619 SRLK 622 (689)
Q Consensus 619 s~~~ 622 (689)
-++.
T Consensus 223 ~H~p 226 (315)
T PLN02585 223 IHYP 226 (315)
T ss_pred EecC
Confidence 5554
No 472
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=23.95 E-value=2e+02 Score=31.08 Aligned_cols=87 Identities=17% Similarity=0.112 Sum_probs=50.6
Q ss_pred CeEEEECCc--cchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 310 RVVLEIGSA--DLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 310 R~VLDVGCG--tGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
.+|+=+|.| -|+|+..|...+ +.+++.+. +.+.+..|.+.|+........ +--.....|+|+.+ +|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~---~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~Viva---vP- 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDR---SAATLKAALELGVIDELTVAG---LAEAAAEADLVIVA---VP- 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecC---cHHHHHHHhhcCcccccccch---hhhhcccCCEEEEe---cc-
Confidence 456777766 356777776654 33344333 345677777777654332110 00124568999754 23
Q ss_pred cccHHHHHHHHHhccCCCcEE
Q 044932 386 HAHGGKLLLEMNRILRPSGYF 406 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~f 406 (689)
...-..+|.|+..-|+||-.+
T Consensus 74 i~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 74 IEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHHHHHhcccCCCCCEE
Confidence 223457889999999988654
No 473
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=23.51 E-value=3.1e+02 Score=29.09 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCeEEEECCccc-hhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC-----CCCCCCCCCcc-eEE
Q 044932 309 IRVVLEIGSADL-SFVASLLA---KE-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN-----RRLPFPSGVFD-AIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtG-sfaa~La~---~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt-----~~LPFpD~SFD-lVh 377 (689)
..+||=.|||.= .++..++. .. |++++.+ ...++++.+.|....+..-.. .++ .....+| +|+
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~-~~~~~~d~~v~ 234 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIN-----SEKLALAKSLGAMQTFNSREMSAPQIQSV-LRELRFDQLIL 234 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCceEecCcccCHHHHHHH-hcCCCCCeEEE
Confidence 467888887532 23333332 23 4555543 345666666665333211100 001 1224577 555
Q ss_pred -eccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 -CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 -cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|... ...+.+..+.|++||.+++...
T Consensus 235 d~~G~--------~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 ETAGV--------PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ECCCC--------HHHHHHHHHHhhcCCEEEEEcc
Confidence 2221 2578899999999999998763
No 474
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=22.25 E-value=5.4e+02 Score=29.62 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCeEEEECCccchh-H-HHhh--cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSF-V-ASLL--AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsf-a-a~La--~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
.++|+=+|+|.=+. . ..+. +..|+++|++|. ....|...|... ..+ ..+ + ..+|+|+..-.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~-----ra~~A~~~G~~v--~~l--~ea-l--~~aDVVI~aTG--- 276 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI-----CALQAAMDGFRV--MTM--EEA-A--ELGDIFVTATG--- 276 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch-----hhHHHHhcCCEe--cCH--HHH-H--hCCCEEEECCC---
Confidence 57899999985332 2 2232 235888888763 222333335321 111 111 1 36899876421
Q ss_pred ccccHHHHHH-HHHhccCCCcEEEEEcCCCc
Q 044932 385 WHAHGGKLLL-EMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 385 W~~d~~~aL~-EI~RVLRPGG~fVIsdp~~~ 414 (689)
.. .++. ++.+.+|+|++++.....+.
T Consensus 277 ---~~-~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 277 ---NK-DVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred ---CH-HHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 12 3454 78999999999999876543
No 475
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=22.06 E-value=1.6e+02 Score=34.47 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=19.8
Q ss_pred CeEEEECCccchhHHHhhc---CCeEEEEcCC
Q 044932 310 RVVLEIGSADLSFVASLLA---KEVLTLTVGL 338 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~---~~V~gmDIsp 338 (689)
-.|||+|.|||.++...+. ..|+++.+--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~Evfk 99 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFK 99 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence 3699999999976533222 2488887654
No 476
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.51 E-value=42 Score=39.32 Aligned_cols=8 Identities=50% Similarity=0.958 Sum_probs=4.9
Q ss_pred cccccccc
Q 044932 613 HADHLFSR 620 (689)
Q Consensus 613 Ha~~lfs~ 620 (689)
|..++|+.
T Consensus 540 ~~~r~F~k 547 (620)
T KOG0350|consen 540 HEKRLFSK 547 (620)
T ss_pred ccchHHHH
Confidence 66666663
No 477
>KOG2730 consensus Methylase [General function prediction only]
Probab=21.40 E-value=55 Score=34.89 Aligned_cols=31 Identities=6% Similarity=-0.001 Sum_probs=23.9
Q ss_pred CCeEEEECCccchhHHHhhc--CCeEEEEcCCc
Q 044932 309 IRVVLEIGSADLSFVASLLA--KEVLTLTVGLK 339 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~ 339 (689)
...|+|.-||.|+.+..++- ..|+++|++|.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPi 127 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPV 127 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHH
Confidence 35799999999987665554 45899999984
No 478
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=21.10 E-value=92 Score=36.03 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCCCCeeEEeecCCcchhHHHHhcc----CCceEEEeccCCCCCchhhhhcc-ccchh---hccccCCCCCCCccchhh
Q 044932 541 GIDWSKIRNVMDMKSIYGGFAAALAQ----QKIWVMNVVPVHAPDTLPVIYDR-GLVGI---YHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 541 ~~~~~~iRNvmDMna~~GgFAAal~~----~~vWVMNvvp~~~~~tL~vI~~R-GLig~---yhdwce~f~typrTyDLl 612 (689)
...++. .|+||.|+-||=+..|.. ...-|-|=+...--..|.--.+| |+--+ -.|=...-..+|.+||.|
T Consensus 110 ~~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 110 DDNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeE
Confidence 334554 599999999997655543 33322221111111222222333 33111 112111112456778887
Q ss_pred cc------cccccccc-----------CCcC-CccceeeeeccccccCcEEEEe
Q 044932 613 HA------DHLFSRLK-----------SRCR-QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 613 Ha------~~lfs~~~-----------~~c~-~~~~illEmDRILRP~G~~iir 648 (689)
-. .|+|..-. .+|. +-..||-..-+.|||||.++-.
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 73 24443211 0111 0034666677899999999887
No 479
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=21.03 E-value=4.9e+02 Score=26.22 Aligned_cols=88 Identities=17% Similarity=0.077 Sum_probs=48.0
Q ss_pred CCeEEEECCc--cchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC------CCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSA--DLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN------RRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCG--tGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt------~~LPFpD~SFDlVh 377 (689)
..+||-.||. .|..++.++. ..|++++.++ ...+.+...|....+..... ..+ .+...+|+++
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~ 213 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKALGARVIAAASSE-----EKLALARALGADHVIDYRDPDLRERVKAL-TGGRGVDVVY 213 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCH-----HHHHHHHHcCCceeeecCCccHHHHHHHH-cCCCCcEEEE
Confidence 4689999983 3333333332 2455555432 35566666665333321110 001 1234688887
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.... ...+..+.+.|+++|.++...
T Consensus 214 ~~~g--------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPVG--------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECcc--------HHHHHHHHHhhccCCEEEEEc
Confidence 5321 145667788999999988754
No 480
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=20.93 E-value=1.6e+02 Score=32.73 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH--c----C---CCcEEecCCCCCC--CCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE--R----G---FPAVVSPLGNRRL--PFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e--R----G---L~~i~~~~dt~~L--PFpD~S 372 (689)
++++||=||-|.|.+....+.+ +++-++++. +.++..++ + | -...++..|.-.+ -++-+.
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~-----~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDE-----NVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhH-----HHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 6789999999999987655543 244444432 22222221 1 1 1112222232111 144689
Q ss_pred cceEEec--ccccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 373 FDAIHCD--GCSITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 373 FDlVhcs--~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
||+|+.- .-..+-. .-...++.-+.+.|||||++++..-
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 9999852 1111100 0123567789999999999999873
No 481
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=20.83 E-value=3.7e+02 Score=28.17 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCeEEEECCcc-chhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC--CC-CCC-CCCCcceEEec
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KE-VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN--RR-LPF-PSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt--~~-LPF-pD~SFDlVhcs 379 (689)
..+||-.|+|. |.++..++. .. |++++-+ ....+.+.+.|....+..-+. .. ..+ +...||+++..
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~-----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDID-----DEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 45788888644 444444443 23 4444332 234555555554322221100 00 011 22458988742
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. .....+.++.+.|+++|.++....
T Consensus 235 --~-----g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 235 --A-----GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred --C-----CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 1 112578899999999999987653
No 482
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=20.82 E-value=33 Score=35.35 Aligned_cols=91 Identities=27% Similarity=0.428 Sum_probs=64.9
Q ss_pred EEeecCCcchhHHHHhcc-CCceEEEeccCCCCCchhhhhccccchhhccccCCCCCCC-ccchhhccccccccccCCcC
Q 044932 549 NVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYP-RSYDLLHADHLFSRLKSRCR 626 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typ-rTyDLlHa~~lfs~~~~~c~ 626 (689)
.|||.++|-|.+.+.|++ +.|-+.=|= .+ +..+.--..||+-=+-+|.-+.++.|| .+||.|=.+..+....+
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v~g~GvE-id-~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~--- 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQVDGYGVE-ID-PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR--- 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCCeEEEEe-cC-HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH---
Confidence 599999999999999987 555432221 11 233455678999888889999998665 69999877766665433
Q ss_pred CccceeeeeccccccCcEEEEe
Q 044932 627 QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 627 ~~~~illEmDRILRP~G~~iir 648 (689)
.+.||-|| ||=|.-+||.
T Consensus 91 -P~~vL~Em---lRVgr~~IVs 108 (193)
T PF07021_consen 91 -PDEVLEEM---LRVGRRAIVS 108 (193)
T ss_pred -HHHHHHHH---HHhcCeEEEE
Confidence 34578888 5556677776
No 483
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=20.76 E-value=3.6e+02 Score=27.90 Aligned_cols=89 Identities=19% Similarity=0.104 Sum_probs=50.2
Q ss_pred CCeEEEECC--ccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC---CCC-CCCCCCcceEEec
Q 044932 309 IRVVLEIGS--ADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN---RRL-PFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGC--GtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt---~~L-PFpD~SFDlVhcs 379 (689)
..+||=.|+ |.|.++..++. ..|++++-+ ....+++++.|...++..-+. ..+ .+..+.||+|+-.
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s-----~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~ 218 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS-----DDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDN 218 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEEC
Confidence 467887774 45555555553 235444432 345666666676433321110 000 0122568988742
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
. ....+.+..+.|+++|.++...
T Consensus 219 ~--------g~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 V--------GGEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C--------CHHHHHHHHHhhccCCEEEEEc
Confidence 1 1257889999999999998764
No 484
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=20.54 E-value=5.9e+02 Score=22.43 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=49.9
Q ss_pred CccchhHHHhh----cC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC----CCCCCCCCCcceEEecccccccc
Q 044932 317 SADLSFVASLL----AK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN----RRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 317 CGtGsfaa~La----~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt----~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
||.|.+|..++ .. .|+.+|.++ ...+.+.+.|+...++.... +++.. ...|.|++....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~-----~~~~~~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~---- 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDP-----ERVEELREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDD---- 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSH-----HHHHHHHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCc-----HHHHHHHhcccccccccchhhhHHhhcCc--cccCEEEEccCC----
Confidence 56666665544 33 488888765 45677788887766654321 12222 467777654211
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+..-..+....|-|-|...++.....
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 11224556677778888888877654
No 485
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=20.48 E-value=25 Score=36.46 Aligned_cols=94 Identities=22% Similarity=0.338 Sum_probs=61.2
Q ss_pred EEeecCCcchhHHHHhcc-CC--ceEEEeccCCCC-Cchhh----hhccccc----hhhccccCC-------CCCCCccc
Q 044932 549 NVMDMKSIYGGFAAALAQ-QK--IWVMNVVPVHAP-DTLPV----IYDRGLV----GIYHDWCES-------FGTYPRSY 609 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~-~~--vWVMNvvp~~~~-~tL~v----I~~RGLi----g~yhdwce~-------f~typrTy 609 (689)
.||.+.+|+|-=|+.+.. .| .| -|++.. +.++- |.+-||- ++.-|-+.+ ...++..|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~W----qPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTW----QPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEE----cCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 799999999975555532 12 35 455554 23222 3344533 444444444 23478899
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+|=+..++-.-.-.|. +-++-..-|+|+|||.+++=
T Consensus 104 D~i~~~N~lHI~p~~~~--~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 104 DAIFCINMLHISPWSAV--EGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ceeeehhHHHhcCHHHH--HHHHHHHHHhCCCCCEEEEe
Confidence 99888877765444455 56788999999999999985
No 486
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=20.46 E-value=2e+02 Score=29.57 Aligned_cols=132 Identities=21% Similarity=0.226 Sum_probs=68.1
Q ss_pred CCeeEEeecCCcchhHHHHhcc-----CCceEEEeccCCCCCchhhhhccccch---hh-ccccCCCCCC-----Cccch
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQ-----QKIWVMNVVPVHAPDTLPVIYDRGLVG---IY-HDWCESFGTY-----PRSYD 610 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~-----~~vWVMNvvp~~~~~tL~vI~~RGLig---~y-hdwce~f~ty-----prTyD 610 (689)
.+-++|+.+++++|==|.+|.. -.|+-+-.-|-...-.-..+-.-||-. +. -|..+.++++ +.+||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4678999999999866665542 123333222211111112333334421 11 2333333332 46899
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeCch----------------hhHHHHHHHHhhcceeEEEeecC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV----------------EILDPLEGILRSLHWEIRMTYAQ 674 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~----------------~~l~~v~~i~~~lrW~~~~~~~~ 674 (689)
+|=.++-=+.|. . .+-..=+.|||||.+|+++.. .+-.-.+.|..-=+.++.+. .
T Consensus 124 ~VFiDa~K~~y~---~----y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll--p 194 (205)
T PF01596_consen 124 FVFIDADKRNYL---E----YFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL--P 194 (205)
T ss_dssp EEEEESTGGGHH---H----HHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE--C
T ss_pred EEEEcccccchh---h----HHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE--E
Confidence 886665333321 1 111222899999999999632 12233344445556666655 3
Q ss_pred CCceEEEEEec
Q 044932 675 DKEGILCAQKT 685 (689)
Q Consensus 675 ~~E~iL~~~K~ 685 (689)
-.++|++++|+
T Consensus 195 igdGl~l~~K~ 205 (205)
T PF01596_consen 195 IGDGLTLARKR 205 (205)
T ss_dssp STTEEEEEEE-
T ss_pred eCCeeEEEEEC
Confidence 35799999985
No 487
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.45 E-value=1.5e+02 Score=26.70 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=42.8
Q ss_pred CeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccccccH
Q 044932 310 RVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHG 389 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~ 389 (689)
.+|| +-||+|.-+..++ ..+.+.+.++|++..+...+...++-....||+|+.+- ..
T Consensus 4 ~~IL-l~C~~G~sSS~l~---------------~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLV---------------NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QV 60 (95)
T ss_pred cEEE-EECCCchhHHHHH---------------HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hH
Confidence 3565 7899884333222 34667788889887655444333321224689998652 12
Q ss_pred HHHHHHHHhccCCCcEEE
Q 044932 390 GKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 390 ~~aL~EI~RVLRPGG~fV 407 (689)
...+.++...+.+-|.=+
T Consensus 61 ~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 61 AYMLPDLKKETDKKGIPV 78 (95)
T ss_pred HHHHHHHHHHhhhcCCCE
Confidence 245667777666544333
No 488
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=20.27 E-value=4.5e+02 Score=27.75 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCCeEEEECC--ccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH-cCCCcEEecC---CC----CCCCCCCCCcc
Q 044932 308 NIRVVLEIGS--ADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE-RGFPAVVSPL---GN----RRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGC--GtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e-RGL~~i~~~~---dt----~~LPFpD~SFD 374 (689)
.+.+||=.|+ |.|.++..++.. .|++++-+ ....+++.+ .|....+... +. ..+ .. +.+|
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~-----~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~-~~-~gvd 223 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS-----DEKVDLLKNKLGFDDAFNYKEEPDLDAALKRY-FP-NGID 223 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHhcCCceeEEcCCcccHHHHHHHh-CC-CCcE
Confidence 3468888886 455566555542 34444432 345566655 5654333211 00 111 12 5688
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+|+-.. ....+.+..+.|+++|.++...
T Consensus 224 ~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 224 IYFDNV--------GGKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEECC--------CHHHHHHHHHHhccCcEEEEec
Confidence 887421 1257889999999999998764
Done!