BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044933
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 18/207 (8%)
Query: 153 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEE 212
+D L ELP + + + L L LA L++LP+ + L L L I C L LPE
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 213 LGNLEA---------LDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDG 263
L + +A L L T I +P SI L+ ++ + RN LS + ++
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI-RNSPLSA-LGPAIHH 227
Query: 264 LQNLRDLNLNDC-GIMELPESLGLLSSVTTLHLEG-NNFERIPESIIQLSNLERLFIRYC 321
L L +L+L C + P G + + L L+ +N +P I +L+ LE+L +R C
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 322 ERLQSLP----KLPCNLLSLDAHHCTA 344
L LP +LP N + L H A
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQA 314
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 94 PSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHL 153
P+ +L NL L + PA HL L+ELDL GC+ L+ P I G
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR------ 252
Query: 154 DGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEEL 213
+ L L L DC +L +LP + +L L+ L + GC NL RLP +
Sbjct: 253 ---------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 214 GNLEA 218
L A
Sbjct: 298 AQLPA 302
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 37/182 (20%)
Query: 94 PSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPG------ 146
P Q L L L+ L++LPA I L L+EL + C +L LPE
Sbjct: 120 PDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 147 -----NITTMHLDGTALEELPSSIECLS-----------------------KLSHLGLAD 178
N+ ++ L+ T + LP+SI L KL L L
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 179 CKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIG-TSITEVPPSIV 237
C +L++ P L LI+ CSNL LP ++ L L+ L G +++ +P I
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 238 RL 239
+L
Sbjct: 299 QL 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 264 LQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCER 323
L +L+ ++ G+ ELP++ + + TL L N +P SI L+ L L IR C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162
Query: 324 LQSLPK 329
L LP+
Sbjct: 163 LTELPE 168
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 86 NFFSKIPTPSLTQHLNNLVILNL-SGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEIS 144
N S +P S + NL IL L S A L LL++LDLS ++L+ + +
Sbjct: 41 NRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 99
Query: 145 ---PGNITTMHLDGTALEEL-PSSIECLSKLSHLGLADCKSLKSLPSGLCK-LKSLDVLI 199
G + T+HLD L+EL P L+ L +L L D +L++LP + L +L L
Sbjct: 100 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLF 158
Query: 200 IDGCSNLQRLPEE-LGNLEALDILHAIGTSITEVPPSIVR-LKRVRGIYFGRNKGLSLPI 257
+ G + + +PE L +LD L + V P R L R+ +Y N +LP
Sbjct: 159 LHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP- 216
Query: 258 TFSVDGLQNLRDLNLND 274
T ++ L+ L+ L LND
Sbjct: 217 TEALAPLRALQYLRLND 233
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 263 GLQNLRDLNLNDCGIMELPE-SLGLLSSVTTLHLEGNNFERIPESIIQ-LSNLERLFI 318
GL L+ L L D + LP+ + L ++T L L GN +PE + L +L+RL +
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 86 NFFSKIPTPSLTQHLNNLVILNL-SGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEIS 144
N S +P S + NL IL L S A L LL++LDLS ++L+ + +
Sbjct: 42 NRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100
Query: 145 ---PGNITTMHLDGTALEEL-PSSIECLSKLSHLGLADCKSLKSLPSGLCK-LKSLDVLI 199
G + T+HLD L+EL P L+ L +L L D +L++LP + L +L L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLF 159
Query: 200 IDGCSNLQRLPEE-LGNLEALDILHAIGTSITEVPPSIVR-LKRVRGIYFGRNKGLSLPI 257
+ G + + +PE L +LD L + V P R L R+ +Y N +LP
Sbjct: 160 LHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP- 217
Query: 258 TFSVDGLQNLRDLNLND 274
T ++ L+ L+ L LND
Sbjct: 218 TEALAPLRALQYLRLND 234
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 263 GLQNLRDLNLNDCGIMELPE-SLGLLSSVTTLHLEGNNFERIPESIIQ-LSNLERLFI 318
GL L+ L L D + LP+ + L ++T L L GN +PE + L +L+RL +
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 12/197 (6%)
Query: 86 NFFSKIPTPSLTQHLNNLVILNL-SGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEIS 144
N S +P S Q NL IL L S A L LL++LDLS ++L+ + +
Sbjct: 41 NRISYVPAASF-QSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTT 99
Query: 145 ---PGNITTMHLDGTALEEL-PSSIECLSKLSHLGLADCKSLKSLPSGLCK-LKSLDVLI 199
G++ T+HLD L+EL P L+ L +L L D +L++LP + L +L L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NNLQALPDNTFRDLGNLTHLF 158
Query: 200 IDGCSNLQRLPEE-LGNLEALDILHAIGTSITEVPPSIVR-LKRVRGIYFGRNKGLSLPI 257
+ G + + +PE L +LD L + V P R L R+ +Y N LP
Sbjct: 159 LHG-NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPA 217
Query: 258 TFSVDGLQNLRDLNLND 274
V L++L+ L LND
Sbjct: 218 EVLVP-LRSLQYLRLND 233
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 61/277 (22%)
Query: 110 GCKN--LQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIEC 167
G N L+ LP + LK +D+ S LK+LP++ P + + LEELP ++
Sbjct: 137 GVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPS-LEFIAAGNNQLEELPE-LQN 193
Query: 168 LSKLSHLGLADCKSLKSLPS----------------GLCKLKSLDVLIIDGCSN--LQRL 209
L L+ + AD SLK LP L +L++L L N L+ L
Sbjct: 194 LPFLTAI-YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 252
Query: 210 PEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNK---------GLSLPITFS 260
P+ +LEAL++ T + E+P S+ L I+ G ++ S I
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 312
Query: 261 VDGLQNLRDLNLNDCGIMELP-----------------ESLGLLSSVTTLHLEGN---NF 300
D +L +LN+++ ++ELP E L ++ LH+E N F
Sbjct: 313 CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREF 372
Query: 301 ERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSL 337
IPES+ L R L +P+LP NL L
Sbjct: 373 PDIPESVEDL--------RMNSHLAEVPELPQNLKQL 401
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 32/209 (15%)
Query: 166 ECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAI 225
+CL + +H + L SLP L+SL + C++L LPE +L++L + +
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELPPHLESL----VASCNSLTELPELPQSLKSLLVDNNN 122
Query: 226 GTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQN---LRDLNLNDCGIMELPE 282
+++++PP + L G+ N+ LP LQN L+ +++++ + +LP+
Sbjct: 123 LKALSDLPPLLEYL----GV--SNNQLEKLP------ELQNSSFLKIIDVDNNSLKKLPD 170
Query: 283 SLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCER--LQSLPKLPCNLLSLDAH 340
L S+ + N E +PE L NL L Y + L+ LP LP +L S+ A
Sbjct: 171 ---LPPSLEFIAAGNNQLEELPE----LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG 223
Query: 341 HCTALESLPGLFPSSDESYLRTLYLSDNF 369
+ LE LP L + +L T+Y +N
Sbjct: 224 N-NILEELPEL---QNLPFLTTIYADNNL 248
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 238 RLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESL-GLLSSVTTLHLE 296
RL ++R +Y NK +LP + L+NL L + D + LP + L ++ L L+
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 297 GNNFERIPESIIQ-LSNLERLFIRYCERLQSLPKLPCNLLSLDAH---HCTALESLP-GL 351
N + +P + L+ L L + Y E LQSLPK + L+ + L+ +P G
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 352 FPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLRE 397
F E L+TL KLD N+++ + +GA ++ L +L+E
Sbjct: 177 FDKLTE--LKTL------KLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 148 ITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVL-IIDGCSNL 206
+T ++L+G +L ELP+ I+ LS L L L+ + L SLP+ L L D +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM--V 305
Query: 207 QRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRG-IYFGRNKGLSLPI 257
LP E GNL L L G + + I+ K V G I++ R+ +P+
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 270 LNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP 328
L+L++ I + ++ +T L+L GN+ +P I LSNL L + + RL SLP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 184 SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVR 243
++ + + K L L ++G S L LP E+ NL L +L +T +P + +++
Sbjct: 238 NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Query: 244 GIYFGRNKGLSLPITF 259
YF N +LP F
Sbjct: 297 YFYFFDNMVTTLPWEF 312
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 234 PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTL 293
PS++RL G K L + +GL NL+ LNL C I ++P +L L + L
Sbjct: 171 PSLMRLD------LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL 223
Query: 294 HLEGNNFERI-PESIIQLSNLERLFI 318
+ GN+F I P S LS+L++L++
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWV 249
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 151 MHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSG----LCKLKSLDVLIIDGCSN 205
+ L +E +PS + + L L L + K L+ + G L LK L++ G N
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL----GMCN 207
Query: 206 LQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGL 264
++ +P L L L+ L G E+ P S L ++ ++ N +SL + DGL
Sbjct: 208 IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGL 265
Query: 265 QNLRDLNLNDCGIMELPESLGL-LSSVTTLHLEGN 298
+L +LNL + LP L L + LHL N
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 238 RLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEG 297
R+ +R + G K LS + +GL NLR LNL C + E+P +L L + L L G
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSG 216
Query: 298 NNFERI-PESIIQLSNLERLFI 318
N+ I P S L +L++L++
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWM 238
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 98 QHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITT-MHLD 154
+ L+NL LNL+ C NL+ +P L L ELDLSG L I PG+ MHL
Sbjct: 182 EGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG----NHLSAIRPGSFQGLMHLQ 234
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 238 RLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEG 297
R+ +R + G K L + +GL NLR LNL C + ++P +L L + L L G
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSG 187
Query: 298 NNFERI-PESIIQLSNLERLFIRYCE 322
N + I P S L++L +L++ + +
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 100 LNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALE 159
L NL LNL C NL+ +P L L+EL+LSG RL I PG+ + T+L
Sbjct: 155 LVNLRYLNLGMC-NLKDIPNLTALVRLEELELSG----NRLDLIRPGSFQGL----TSLR 205
Query: 160 ELPSSIECLSKLSHLGLADCKSLKSL 185
+L ++ + D KSL+ L
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEEL 231
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 133 GCSKLKRLPEISPGNITTMHLDG---TALEELPSSIECL----SKLSHL-----GLADCK 180
G S L LP+ P +ITT+ + T+L LP + L ++L+ L GL +
Sbjct: 48 GESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELS 107
Query: 181 -------SLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVP 233
L +LPSGLCKL + + ++L LP L L D A S+ +P
Sbjct: 108 IFSNPLTHLPALPSGLCKL----WIFGNQLTSLPVLPPGLQELSVSDNQLA---SLPALP 160
Query: 234 PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESL--------- 284
+ +L + N+ SLP+ S GLQ L + + LP L
Sbjct: 161 SELCKL------WAYNNQLTSLPMLPS--GLQELSVSDNQLASLPTLPSELYKLWAYNNR 212
Query: 285 -----GLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDA 339
L S + L + GN +P + S L+ L + RL SLP LP LLSL
Sbjct: 213 LTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVS-GNRLTSLPMLPSGLLSLSV 268
Query: 340 HH 341
+
Sbjct: 269 YR 270
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 116/270 (42%), Gaps = 61/270 (22%)
Query: 78 NQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKL 137
N ++ + + +P L H+ LVI + NL SLPA L+ L++SG ++L
Sbjct: 42 NAVLNVGESGLTTLPD-CLPAHITTLVIPD----NNLTSLPALP--PELRTLEVSG-NQL 93
Query: 138 KRLPEISPGNITTMHLDGTALEELPSSIECLSKL-----------------SHLGLADCK 180
LP + PG + + + L LP+ L KL L ++D +
Sbjct: 94 TSLPVLPPG-LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152
Query: 181 --SLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALD--------------ILHA 224
SL +LPS LCKL + + + ++L LP L L D L A
Sbjct: 153 LASLPALPSELCKLWAYN----NQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWA 208
Query: 225 IGTSITEVP--PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE 282
+T +P PS ++ V G N+ SLP+ S L++L ++ + LP
Sbjct: 209 YNNRLTSLPALPSGLKELIVSG-----NRLTSLPVLPS-----ELKELMVSGNRLTSLPM 258
Query: 283 SLGLLSSVTTLHLEGNNFERIPESIIQLSN 312
L S + +L + N R+PES+I LS+
Sbjct: 259 ---LPSGLLSLSVYRNQLTRLPESLIHLSS 285
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 238 RLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEG 297
R+ +R + G K L + +GL NLR LNL C + ++P +L L + L L G
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSG 187
Query: 298 NNFERI-PESIIQLSNLERLFIRYCE 322
N + I P S L++L +L++ + +
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 98 QHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTA 157
+ L NL LNL C NL+ +P L L+EL+LSG RL I PG+ + T+
Sbjct: 153 EGLVNLRYLNLGMC-NLKDIPNLTALVRLEELELSG----NRLDLIRPGSFQGL----TS 203
Query: 158 LEELPSSIECLSKLSHLGLADCKSLKSL 185
L +L ++ + D KSL+ L
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLKSLEEL 231
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 83/213 (38%), Gaps = 42/213 (19%)
Query: 137 LKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLD 196
L LP+ P IT + + AL LP E + L +L D + L +LP LK LD
Sbjct: 71 LSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPELPASLKHLD 126
Query: 197 VLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLP 256
V + L LPE LE ++ + T + E+P S+ + RN L+
Sbjct: 127 V----DNNQLTXLPELPALLEYINADNNQLTXLPELPTSL-------EVLSVRNNQLTF- 174
Query: 257 ITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 316
+ ELPESL L T L E +P ++ + E
Sbjct: 175 --------------------LPELPESLEALDVSTNL------LESLPAVPVRNHHSEET 208
Query: 317 FIRYCERLQSLPKLPCNLLSLDAHHCTALESLP 349
I + R + +P N+LSLD LE P
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNP 241
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 260 SVDGLQ---NLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESII-QLSNLER 315
SV G+Q N+R L L + ++ +L L+++T L L GN + +P + +L+NL+
Sbjct: 55 SVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 316 LFIRYCERLQSLP-----KLPCNLLSLDAHHCTALESLP-GLFPSSDESYLRTLYLSDNF 369
L + +LQSLP KL NL L +H L+SLP G+F L L D
Sbjct: 114 LVL-VENQLQSLPDGVFDKL-TNLTYLYLYH-NQLQSLPKGVF-----DKLTNLTRLD-- 163
Query: 370 KLDRNEIRGIVKGALQKIQLLATARLREAREK 401
LD N+++ + +G K+ L L + + K
Sbjct: 164 -LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 33/125 (26%)
Query: 95 SLTQHLNNLVILNLSGCKNLQSLPARIHLKL--LKELDLSGCSKLKRLPE---------- 142
S + L NL L L+G + LQSLP + KL LKEL L ++L+ LP+
Sbjct: 79 SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLT 136
Query: 143 -----------ISPG------NITTMHLDGTALEELPSSI-ECLSKLSHLGLADCKSLKS 184
+ G N+T + LD L+ LP + + L++L L L D LKS
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND-NQLKS 195
Query: 185 LPSGL 189
+P G+
Sbjct: 196 VPDGV 200
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 260 SVDGLQ---NLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESII-QLSNLER 315
SV G+Q N+R L L + ++ +L L+++T L L GN + +P + +L+NL+
Sbjct: 55 SVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 316 LFIRYCERLQSLP-----KLPCNLLSLDAHHCTALESLP-GLFPSSDESYLRTLYLSDNF 369
L + +LQSLP KL NL L+ H L+SLP G+F L L D
Sbjct: 114 LVL-VENQLQSLPDGVFDKL-TNLTYLNLAH-NQLQSLPKGVFDK-----LTNLTELD-- 163
Query: 370 KLDRNEIRGIVKGALQKIQLLATARLREAREK 401
L N+++ + +G K+ L RL + + K
Sbjct: 164 -LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 19/142 (13%)
Query: 188 GLCKLKSLDVLIIDGCSNLQRLPE-----ELGNLEALDILHA---IGTSITEVPPSIVRL 239
GL +L+ LD SNL+++ E L NL LDI H + + S + +
Sbjct: 394 GLEQLEHLDF----QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 240 KRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGN 298
++ G F N LP F+ L+NL L+L+ C + +L P + LSS+ L++ N
Sbjct: 450 LKMAGNSFQEN---FLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 299 NFERIPESII-QLSNLERLFIR 319
+ +P+ I +L++L+++++
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLH 526
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 126 LKELDLSGCSKLKRLPEISPGNITTMHLDGT-----ALEELPSSIECLSKLSHLGLADCK 180
+K + G S K L +I+ + T DG AL+E+ S S L L +C
Sbjct: 205 VKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGXKALDEIAIPKNVTSIGSFL-LQNCT 263
Query: 181 SLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALD 220
+LK+L + K+K++ L+ GCSNL ++ + +E L+
Sbjct: 264 ALKTL-NFYAKVKTVPYLLCSGCSNLTKVVXDNSAIETLE 302
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 130 DLSGCS--KLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADC--KSLKSL 185
+++ CS KL ++P+ P NIT ++L L LP++ ++ S L D ++ L
Sbjct: 12 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL 69
Query: 186 PSGLC-KLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRG 244
LC KL L VL NLQ EL L D A T++TE+ +++++
Sbjct: 70 EPELCQKLPMLKVL------NLQH--NELSQLS--DKTFAFCTNLTELHLMSNSIQKIKN 119
Query: 245 IYFGRNKGLSLPITFSVDGLQNLR 268
F + K L + + S +GL + +
Sbjct: 120 NPFVKQKNL-ITLDLSHNGLSSTK 142
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 130 DLSGCS--KLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADC--KSLKSL 185
+++ CS KL ++P+ P NIT ++L L LP++ ++ S L D ++ L
Sbjct: 7 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL 64
Query: 186 PSGLC-KLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRG 244
LC KL L VL NLQ EL L D A T++TE+ +++++
Sbjct: 65 EPELCQKLPMLKVL------NLQH--NELSQLS--DKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 245 IYFGRNKGLSLPITFSVDGLQNLR 268
F + K L + + S +GL + +
Sbjct: 115 NPFVKQKNL-ITLDLSHNGLSSTK 137
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 130 DLSGCS--KLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADC--KSLKSL 185
+++ CS KL ++P+ P NIT ++L L LP++ ++ S L D ++ L
Sbjct: 17 EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL 74
Query: 186 PSGLC-KLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRG 244
LC KL L VL NLQ EL L D A T++TE+ +++++
Sbjct: 75 EPELCQKLPMLKVL------NLQH--NELSQLS--DKTFAFCTNLTELHLMSNSIQKIKN 124
Query: 245 IYFGRNKGLSLPITFSVDGLQNLR 268
F + K L + + S +GL + +
Sbjct: 125 NPFVKQKNL-ITLDLSHNGLSSTK 147
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 79 QIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI--HLKLLKELDLSGCSK 136
QI+ N +K+ P + L NL L L G L +LP + L L LDL G ++
Sbjct: 43 QILYLHDNQITKL-EPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDL-GTNQ 99
Query: 137 LKRLPEISPG---NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSG 188
L LP ++ + + L ELP IE L+ L+HL L D LKS+P G
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-DQNQLKSIPHG 153
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 118/287 (41%), Gaps = 53/287 (18%)
Query: 151 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLP 210
+ L T L ELPS + LS L L L+ K SL L I G N +RL
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG--NTKRLE 340
Query: 211 EELGNLEALDILHAIGTSITEVPPS------IVRLKRVRGIYFGRNKGLSLPITFSVDGL 264
G LE L+ L + S ++ S + L ++ + N+ LSL +
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 265 Q-NLRDL---------------NLNDCGIMELPESLGLLSS---------VTTLHLEGNN 299
Q L DL NL+ ++ L SL +SS + L+L+GN+
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 300 FERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCTALESLPG-------LF 352
F P+ IQ +N ++ RL+ L C+L S+D H T+L+ + L
Sbjct: 461 F---PKGNIQKTN----SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
Query: 353 PSSDE--SYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLRE 397
SS E S+L+ +YL+ L N I I+ L + T LR+
Sbjct: 514 SSSIEALSHLKGIYLN----LASNHISIILPSLLPILSQQRTINLRQ 556
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 185 LPSGLCKLKSLDVLIIDGCSNL-QRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRV 242
+PS L L L+ L I G +NL +P + L L L+ T+++ +P + ++K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 243 RGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIM-ELPESLGLLSSV-TTLHLEGNNF 300
+ F N LS + S+ L NL + + I +P+S G S + T++ + N
Sbjct: 128 VTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 301 E-RIPESIIQLS 311
+IP + L+
Sbjct: 187 TGKIPPTFANLN 198
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 135 SKLKRLPEISPGNITTMHLDGTALEELPSSI-ECLSKL--SHLGLADCKSLKSLPSGLCK 191
++LK LPE P + + + + ++ S+ L+++ LG KS
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 192 LKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNK 251
+K L + I +N+ +P+ L +L LH G IT+V + ++G+
Sbjct: 170 MKKLSYIRI-ADTNITTIPQGLP--PSLTELHLDGNKITKVDAA-----SLKGLNNLAKL 221
Query: 252 GLSLPITFSVDG--LQN---LRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERI 303
GLS +VD L N LR+L+LN+ ++++P L + ++L NN I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 135 SKLKRLPEISPGNITTMHLDGTALEELPSSI-ECLSKL--SHLGLADCKSLKSLPSGLCK 191
++LK LPE P + + + + ++ S+ L+++ LG KS
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 192 LKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNK 251
+K L + I +N+ +P+ L +L LH G IT+V + ++G+
Sbjct: 170 MKKLSYIRI-ADTNITTIPQGLP--PSLTELHLDGNKITKVDAA-----SLKGLNNLAKL 221
Query: 252 GLSLPITFSVDG--LQN---LRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERI 303
GLS +VD L N LR+L+LN+ ++++P L + ++L NN I
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 130 DLSGCS--KLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADC--KSLKSL 185
+++ CS KL +P+ P NIT ++L L LP + ++ S L + D S+ L
Sbjct: 7 NVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPT--NFTRYSQLAILDAGFNSISKL 64
Query: 186 PSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGI 245
LC+ +L + NLQ EL + D T++TE+ + +++
Sbjct: 65 EPELCQ-----ILPLLKVLNLQH--NELSQIS--DQTFVFCTNLTELDLMSNSIHKIKSN 115
Query: 246 YFGRNKGLSLPITFSVDGLQNLR 268
F K L + + S +GL + +
Sbjct: 116 PFKNQKNL-IKLDLSHNGLSSTK 137
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 50/197 (25%)
Query: 79 QIITAAFNFFSKIPTPSLTQHLNNLVILNLSG-----------CKNLQSLPARIHLK--- 124
+++ +FN FS SLT +L+ L+LS C+N ++ ++L+
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 125 LLKEL--DLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSL 182
++ LS CS+L L +++ +L GT +PSS+ LSKL L L
Sbjct: 403 FTGKIPPTLSNCSELVSL------HLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLE 452
Query: 183 KSLPSGLCKLKSLDVLIID-------------GCSNLQ-----------RLPEELGNLEA 218
+P L +K+L+ LI+D C+NL +P+ +G LE
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 219 LDILHAIGTSITEVPPS 235
L IL S + P+
Sbjct: 513 LAILKLSNNSFSGNIPA 529
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 50/197 (25%)
Query: 79 QIITAAFNFFSKIPTPSLTQHLNNLVILNLSG-----------CKNLQSLPARIHLK--- 124
+++ +FN FS SLT +L+ L+LS C+N ++ ++L+
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 125 LLKEL--DLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSL 182
++ LS CS+L L +++ +L GT +PSS+ LSKL L L
Sbjct: 406 FTGKIPPTLSNCSELVSL------HLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLE 455
Query: 183 KSLPSGLCKLKSLDVLIID-------------GCSNLQ-----------RLPEELGNLEA 218
+P L +K+L+ LI+D C+NL +P+ +G LE
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 219 LDILHAIGTSITEVPPS 235
L IL S + P+
Sbjct: 516 LAILKLSNNSFSGNIPA 532
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,720,333
Number of Sequences: 62578
Number of extensions: 683734
Number of successful extensions: 1430
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 106
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)