Query 044933
Match_columns 570
No_of_seqs 610 out of 4670
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.1E-45 6.7E-50 426.2 42.0 507 1-564 557-1100(1153)
2 PLN00113 leucine-rich repeat r 100.0 5.1E-38 1.1E-42 364.9 19.8 394 1-405 117-564 (968)
3 PLN00113 leucine-rich repeat r 100.0 8.5E-38 1.8E-42 363.1 20.9 389 1-406 92-517 (968)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-32 4E-37 275.2 3.8 355 30-396 78-447 (873)
5 KOG4194 Membrane glycoprotein 100.0 3E-30 6.4E-35 259.4 4.5 349 5-366 81-447 (873)
6 KOG0444 Cytoskeletal regulator 100.0 3.9E-31 8.5E-36 267.1 -6.0 306 5-320 10-325 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 1.1E-30 2.3E-35 264.0 -4.3 299 24-329 71-380 (1255)
8 PLN03210 Resistant to P. syrin 99.9 2.5E-25 5.4E-30 259.7 24.4 311 2-328 589-910 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 1.9E-28 4.1E-33 236.7 -12.1 112 280-401 427-541 (565)
10 KOG0472 Leucine-rich repeat pr 99.9 1E-28 2.3E-33 238.5 -15.9 386 21-432 58-541 (565)
11 KOG0618 Serine/threonine phosp 99.9 2.5E-26 5.4E-31 242.8 -1.9 377 3-398 46-510 (1081)
12 PRK15387 E3 ubiquitin-protein 99.8 1.6E-20 3.4E-25 205.0 17.5 262 30-328 201-462 (788)
13 PRK15387 E3 ubiquitin-protein 99.8 7.3E-20 1.6E-24 199.8 16.3 261 5-307 204-465 (788)
14 KOG0618 Serine/threonine phosp 99.8 2.1E-22 4.6E-27 213.3 -5.4 350 30-401 45-420 (1081)
15 PRK15370 E3 ubiquitin-protein 99.8 5E-19 1.1E-23 194.5 12.8 247 30-301 178-428 (754)
16 KOG4237 Extracellular matrix p 99.8 1.5E-20 3.2E-25 182.2 -2.6 262 34-299 50-357 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3.1E-23 190.8 12.1 249 3-279 179-429 (754)
18 KOG4237 Extracellular matrix p 99.7 8.1E-20 1.8E-24 177.0 -1.6 297 21-323 59-476 (498)
19 KOG0617 Ras suppressor protein 99.6 5.1E-18 1.1E-22 146.8 -5.4 167 146-341 33-199 (264)
20 cd00116 LRR_RI Leucine-rich re 99.6 3.4E-17 7.4E-22 166.2 -1.3 253 50-321 21-317 (319)
21 KOG0617 Ras suppressor protein 99.6 6.1E-17 1.3E-21 140.1 -4.8 156 189-349 29-189 (264)
22 cd00116 LRR_RI Leucine-rich re 99.5 1.5E-15 3.2E-20 154.2 -0.7 147 105-251 2-176 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.2 5.9E-11 1.3E-15 133.2 9.5 261 40-327 511-786 (889)
24 COG4886 Leucine-rich repeat (L 99.2 4.3E-11 9.3E-16 125.3 7.6 177 147-328 117-294 (394)
25 COG4886 Leucine-rich repeat (L 99.2 4.9E-11 1.1E-15 124.8 7.6 198 105-307 97-296 (394)
26 KOG3207 Beta-tubulin folding c 99.2 2.8E-12 6E-17 126.8 -1.8 64 71-135 117-183 (505)
27 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4.2E-17 131.7 -5.0 193 122-321 73-270 (722)
28 KOG0532 Leucine-rich repeat (L 99.1 1E-11 2.3E-16 126.4 -2.1 202 135-343 60-271 (722)
29 KOG1259 Nischarin, modulator o 99.0 6.6E-11 1.4E-15 111.7 2.0 131 169-305 284-416 (490)
30 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.7E-15 115.3 2.2 202 30-251 121-337 (505)
31 KOG4658 Apoptotic ATPase [Sign 99.0 9.5E-10 2.1E-14 123.6 8.5 262 30-299 523-805 (889)
32 KOG1259 Nischarin, modulator o 99.0 1.9E-10 4E-15 108.7 1.8 204 185-401 206-412 (490)
33 PF14580 LRR_9: Leucine-rich r 98.9 4.7E-10 1E-14 101.7 3.8 58 263-320 86-149 (175)
34 KOG1909 Ran GTPase-activating 98.9 4.4E-11 9.5E-16 115.5 -3.3 238 50-323 28-310 (382)
35 KOG1909 Ran GTPase-activating 98.9 3.8E-11 8.3E-16 115.8 -4.0 177 167-344 90-310 (382)
36 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.2E-14 97.6 4.5 104 30-136 19-125 (175)
37 PLN03150 hypothetical protein; 98.6 8.2E-08 1.8E-12 105.7 8.8 106 171-277 420-527 (623)
38 KOG4341 F-box protein containi 98.6 6.4E-10 1.4E-14 109.8 -7.7 103 286-393 344-457 (483)
39 KOG0531 Protein phosphatase 1, 98.5 9.2E-09 2E-13 108.1 -1.4 238 51-322 71-316 (414)
40 PLN03150 hypothetical protein; 98.5 1.6E-07 3.5E-12 103.4 7.6 106 194-300 419-527 (623)
41 PRK15386 type III secretion pr 98.5 3.6E-07 7.7E-12 92.9 8.8 166 189-377 48-219 (426)
42 KOG2120 SCF ubiquitin ligase, 98.5 2.1E-09 4.6E-14 101.6 -7.2 194 30-227 159-373 (419)
43 KOG0531 Protein phosphatase 1, 98.5 1.8E-08 4E-13 105.9 -1.6 164 151-322 100-266 (414)
44 PF13855 LRR_8: Leucine rich r 98.4 2.1E-07 4.5E-12 69.2 4.0 58 265-322 1-60 (61)
45 PF13855 LRR_8: Leucine rich r 98.4 2.1E-07 4.6E-12 69.1 3.9 59 146-204 1-60 (61)
46 KOG4341 F-box protein containi 98.4 3.9E-09 8.4E-14 104.3 -7.3 156 263-423 292-461 (483)
47 KOG2120 SCF ubiquitin ligase, 98.4 6.3E-09 1.4E-13 98.5 -5.7 178 146-344 185-375 (419)
48 PRK15386 type III secretion pr 98.3 3E-06 6.6E-11 86.2 10.8 39 170-210 73-111 (426)
49 KOG1859 Leucine-rich repeat pr 98.2 2.7E-08 5.9E-13 104.5 -6.7 198 73-277 82-291 (1096)
50 KOG2982 Uncharacterized conser 98.2 4.6E-07 9.9E-12 86.1 2.0 57 122-179 95-156 (418)
51 KOG1859 Leucine-rich repeat pr 98.2 1.5E-07 3.2E-12 99.1 -1.9 180 210-401 102-292 (1096)
52 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.8E-11 57.5 3.4 40 265-304 1-40 (44)
53 KOG2982 Uncharacterized conser 98.0 1.5E-06 3.3E-11 82.6 0.8 181 50-251 69-260 (418)
54 COG5238 RNA1 Ran GTPase-activa 97.8 8.1E-06 1.8E-10 76.8 1.7 41 264-304 271-319 (388)
55 KOG3665 ZYG-1-like serine/thre 97.8 6.6E-06 1.4E-10 90.7 0.6 132 169-301 122-263 (699)
56 KOG4579 Leucine-rich repeat (L 97.8 1.6E-06 3.5E-11 73.3 -3.4 103 219-322 29-134 (177)
57 COG5238 RNA1 Ran GTPase-activa 97.6 1.2E-05 2.6E-10 75.7 0.3 83 240-322 157-253 (388)
58 PF12799 LRR_4: Leucine Rich r 97.6 6.8E-05 1.5E-09 51.2 3.8 37 146-182 1-37 (44)
59 KOG3665 ZYG-1-like serine/thre 97.5 3.1E-05 6.7E-10 85.5 1.7 129 101-230 122-263 (699)
60 KOG1644 U2-associated snRNP A' 97.4 0.0002 4.4E-09 64.8 5.3 82 51-135 41-124 (233)
61 KOG1644 U2-associated snRNP A' 97.3 0.00043 9.2E-09 62.8 5.9 124 54-203 21-150 (233)
62 KOG1947 Leucine rich repeat pr 97.3 2.7E-05 5.8E-10 83.6 -2.7 58 167-224 267-328 (482)
63 KOG4579 Leucine-rich repeat (L 97.2 1.6E-05 3.6E-10 67.3 -3.8 88 217-306 53-141 (177)
64 KOG1947 Leucine rich repeat pr 96.9 5.9E-05 1.3E-09 81.0 -4.1 107 122-228 186-306 (482)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0015 3.2E-08 61.8 2.4 58 265-322 91-154 (260)
66 KOG2123 Uncharacterized conser 96.4 0.00017 3.6E-09 68.5 -4.6 99 30-130 19-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.4 0.0026 5.7E-08 60.2 3.0 58 264-322 42-102 (260)
68 PF13306 LRR_5: Leucine rich r 95.9 0.026 5.6E-07 48.5 7.0 35 261-297 77-112 (129)
69 KOG2123 Uncharacterized conser 95.8 0.00048 1E-08 65.4 -4.7 78 217-298 19-98 (388)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0064 1.4E-07 34.5 1.2 20 289-308 1-20 (22)
71 PF13306 LRR_5: Leucine rich r 95.1 0.064 1.4E-06 45.9 6.7 119 165-290 8-128 (129)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.5E-07 33.5 1.1 21 147-167 1-21 (22)
73 PF07725 LRR_3: Leucine Rich R 94.7 0.027 5.8E-07 30.9 1.8 20 53-72 1-20 (20)
74 PF13504 LRR_7: Leucine rich r 94.3 0.028 6.1E-07 29.6 1.4 16 289-304 2-17 (17)
75 KOG4308 LRR-containing protein 92.2 0.0017 3.7E-08 68.8 -10.4 159 164-322 110-301 (478)
76 PF13504 LRR_7: Leucine rich r 92.1 0.11 2.3E-06 27.4 1.5 16 147-162 2-17 (17)
77 KOG3864 Uncharacterized conser 91.3 0.048 1E-06 49.9 -0.6 96 38-133 86-185 (221)
78 smart00369 LRR_TYP Leucine-ric 89.7 0.25 5.5E-06 29.1 1.8 20 287-306 1-20 (26)
79 smart00370 LRR Leucine-rich re 89.7 0.25 5.5E-06 29.1 1.8 20 287-306 1-20 (26)
80 KOG4308 LRR-containing protein 87.9 0.0068 1.5E-07 64.3 -10.1 113 189-301 168-303 (478)
81 smart00369 LRR_TYP Leucine-ric 84.8 0.67 1.5E-05 27.2 1.7 21 216-236 1-21 (26)
82 smart00370 LRR Leucine-rich re 84.8 0.67 1.5E-05 27.2 1.7 21 216-236 1-21 (26)
83 KOG0473 Leucine-rich repeat pr 81.5 0.049 1.1E-06 50.8 -6.3 86 237-324 39-124 (326)
84 KOG3864 Uncharacterized conser 81.2 0.72 1.6E-05 42.4 1.1 84 288-397 101-185 (221)
85 KOG0473 Leucine-rich repeat pr 76.7 0.11 2.3E-06 48.7 -5.7 79 30-111 42-121 (326)
86 smart00364 LRR_BAC Leucine-ric 74.8 1.8 4E-05 25.5 1.2 18 52-69 2-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 70.0 3.6 7.8E-05 24.4 1.7 16 288-303 2-17 (26)
88 smart00367 LRR_CC Leucine-rich 68.7 4 8.8E-05 23.9 1.8 21 358-378 2-22 (26)
89 PF13516 LRR_6: Leucine Rich r 65.9 3.8 8.3E-05 23.4 1.2 14 288-301 2-15 (24)
90 KOG3763 mRNA export factor TAP 58.3 5.3 0.00012 42.4 1.5 17 439-455 440-456 (585)
91 KOG4242 Predicted myosin-I-bin 55.8 34 0.00074 35.9 6.7 57 124-180 214-279 (553)
92 smart00368 LRR_RI Leucine rich 49.0 13 0.00028 22.3 1.6 14 288-301 2-15 (28)
93 KOG3763 mRNA export factor TAP 38.5 12 0.00026 39.8 0.5 78 98-175 215-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.1e-45 Score=426.19 Aligned_cols=507 Identities=25% Similarity=0.370 Sum_probs=375.3
Q ss_pred CCCceEEEEecCCc-ccccccccccCCCCC--CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCC
Q 044933 1 MPNLRILKFYSSMN-EENKCKMSYFQGPGF--TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKL 77 (570)
Q Consensus 1 m~~Lr~L~l~~~~~-~~~~~~~~lp~~~~~--~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L 77 (570)
|++|++|+++.+.+ ..++...++|+++.+ ++||+|+|++|+++.+|..|.+.+|++|+|++|+++.+|++++.+++|
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~L 636 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGL 636 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCC
Confidence 78999999987543 223456789999988 789999999999999999999999999999999999999999999999
Q ss_pred cEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCC-CCCccEEEecC
Q 044933 78 NQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEIS-PGNITTMHLDG 155 (570)
Q Consensus 78 ~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~-~~~L~~L~L~~ 155 (570)
+.|+|++++.+..+|. + ..+++|+.|+|++|..+..+|..+ .+++|+.|++++|..++.+|... ..+|+.|++++
T Consensus 637 k~L~Ls~~~~l~~ip~--l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD--L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred CEEECCCCCCcCcCCc--c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC
Confidence 9999999888888874 4 679999999999999999999988 89999999999999999998754 37999999998
Q ss_pred cC-CCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCC-------CcchhhcCCCcCceeccccc
Q 044933 156 TA-LEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQ-------RLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 156 ~~-i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-------~~p~~l~~l~~L~~L~l~~n 227 (570)
|. +..+|.. ..+|+.|++++|.+ ..+|..+ .+++|+.|.+.++.... ..+......++|+.|++++|
T Consensus 714 c~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 714 CSRLKSFPDI---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCccccccc---cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 74 3455542 46889999999874 5677655 57888888887754211 11122234578999999988
Q ss_pred cC-ccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCcccccCc
Q 044933 228 SI-TEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNNFERIPE 305 (570)
Q Consensus 228 ~i-~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~l~~lp~ 305 (570)
.. .++|.+++++++|+.|++++|..+. .+|..+ .+++|+.|++++|.... +|.. .++|+.|+|++|.++.+|.
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChH
Confidence 54 4899999999999999999987443 344433 68899999999986543 5543 4689999999999999999
Q ss_pred cccCCCCcCEEcccCccccCcCCCCC---cccceecccccccCCcCCCCCCC-----------CCccccceeeccCCccc
Q 044933 306 SIIQLSNLERLFIRYCERLQSLPKLP---CNLLSLDAHHCTALESLPGLFPS-----------SDESYLRTLYLSDNFKL 371 (570)
Q Consensus 306 ~l~~l~~L~~L~Ls~~~~l~~lp~~~---~~L~~L~l~~c~~l~~~~~~~~~-----------~~~~~L~~L~l~~~~~L 371 (570)
++..+++|+.|+|++|+.++.+|..+ .+|+.+++++|.++..++..-.. ..++....+...+|++|
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L 943 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL 943 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCC
Confidence 99999999999999999999888643 56777899999988765432100 01122233455577666
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCeeEeecCCCCCcceeecCCCcEEE-EEcCCCCCCCCceeeEEE
Q 044933 372 DRNEIRGIVKGALQKIQLLATARLREAREKISYPSLRGRGFLPWNKIPKWFSFQSAGSCVT-LEMPPDFFNNKSVLGLAF 450 (570)
Q Consensus 372 ~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~pg~~ip~~f~~~~~~~~i~-~~lp~~~~~~~~~~g~~~ 450 (570)
+..... + + ......+++||.++|+||.||+.|++++ +++|+.|+ ...|.||++
T Consensus 944 ~~~a~l----------~---------~------~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~ 997 (1153)
T PLN03210 944 DQEALL----------Q---------Q------QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRA 997 (1153)
T ss_pred Cchhhh----------c---------c------cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEE
Confidence 543320 0 0 0113357899999999999999999998 99999998 678999999
Q ss_pred EEEEeccCccCccccceeeeEEEEEecccccCCCCCCCcceee---eeecCCCccCCCCeEEEEEeeccccccccc----
Q 044933 451 SVIVNFSRKFNFFYTSKIEKQFYVYCEYIVRPKDYHPHCSTSR---MTLLGVGDCVVSDHLFFGYYFFDGEEFNDF---- 523 (570)
Q Consensus 451 ~~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dh~~~~~~~~~~~~~~~~---- 523 (570)
|+|+++....+......+.+.|+|++..+ ..+... ..+.+ .. ..+|++++..... ...+
T Consensus 998 c~v~~~~~~~~~~~~~~~~~~c~~~~~~~--------~~~~~~~~~~~~~~-~~--~~~~l~~~~~~~~---~~~~~~~~ 1063 (1153)
T PLN03210 998 CAVVDSESFFIISVSFDIQVCCRFIDRLG--------NHFDSPYQPHVFSV-TK--KGSHLVIFDCCFP---LNEDNAPL 1063 (1153)
T ss_pred EEEEecCccccCCCceeEEEEEEEECCCC--------CccccCCCceeEee-ec--cccceEEeccccc---ccccccch
Confidence 99999887644322346678888888766 211100 00000 01 3455555432211 1110
Q ss_pred ccCCCCceEEEEEEEecCccccccccEEeeeeEEEecCCCC
Q 044933 524 RKYNCVPVAVRFNFREANGFEFLDYPVKKCGIRLFHAPDSR 564 (570)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cg~~~~~~~~~~ 564 (570)
.....+++.++|++.+. ...++||+||||++|+.+..
T Consensus 1064 ~~~~~~~~~~~f~~~~~----~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1064 AELNYDHVDIQFRLTNK----NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred hccCCceeeEEEEEecC----CCCeEEEeeeEEEeccCCCc
Confidence 01123455688888742 23479999999999966544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.1e-38 Score=364.93 Aligned_cols=394 Identities=22% Similarity=0.274 Sum_probs=193.7
Q ss_pred CCCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCC-CCCCCc-CCCCcEEEECCCCChh-hccccccCccC
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLK-LLPSNI-HPEKLVLLEMPHSNIE-QLFDSVQDYGK 76 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~n~l~-~l~~~~~~l~~ 76 (570)
|++||+|++++|.. ...+|. .. ++|++|++++|.+. .+|..+ .+++|++|+|++|.+. .+|..+..+++
T Consensus 117 l~~L~~L~Ls~n~l-----~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 189 (968)
T PLN00113 117 SSSLRYLNLSNNNF-----TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189 (968)
T ss_pred CCCCCEEECcCCcc-----ccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcC
Confidence 45777777765432 122332 12 55555555555554 344444 4555555555555554 34555555555
Q ss_pred CcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEe
Q 044933 77 LNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHL 153 (570)
Q Consensus 77 L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L 153 (570)
|++|+|++|+ +++..+..+ ..+++|++|+|++|.+.+.+|..+ .+++|++|++++|.....+|.... ++|++|++
T Consensus 190 L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 190 LEFLTLASNQ-LVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred CCeeeccCCC-CcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 5555555544 333333334 455555555555555555555444 455555555555544333433222 34555555
Q ss_pred cCcCCC-cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-c
Q 044933 154 DGTALE-ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-E 231 (570)
Q Consensus 154 ~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~ 231 (570)
++|.+. .+|.++..+++|++|++++|.+.+.+|..+.++++|+.|++++|...+..|..+..+++|+.|++++|.+. .
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 555443 34444444445555555544444444444444444444444444444444444444444444444444443 3
Q ss_pred CCchhccCCCCcEEEeccCCC-----------------------CCCccccccccCCCCCeeecccCCCCC-cCcccCCC
Q 044933 232 VPPSIVRLKRVRGIYFGRNKG-----------------------LSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLL 287 (570)
Q Consensus 232 l~~~l~~l~~L~~L~l~~n~~-----------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l 287 (570)
+|..+..+++|+.|++++|.+ .....|..+..+++|+.|++++|.+++ +|..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 344444444444444444431 223334445555566666666665554 45555556
Q ss_pred CCccEEEccCCccc-ccCccccCCCCcCEEcccCccccCcCCCC--CcccceecccccccCCcCCCCCCCCCccccceee
Q 044933 288 SSVTTLHLEGNNFE-RIPESIIQLSNLERLFIRYCERLQSLPKL--PCNLLSLDAHHCTALESLPGLFPSSDESYLRTLY 364 (570)
Q Consensus 288 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 364 (570)
++|+.|++++|.++ .+|..+..+++|+.|++++|+..+.+|.. ..+|+.|++++|.....++..+ ..+++|+.|+
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~ 505 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQLK 505 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh--hhhhccCEEE
Confidence 66666666666555 33444445555666666655554444432 2345555555544333333222 1233344444
Q ss_pred ccCC------------------cccchhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCC
Q 044933 365 LSDN------------------FKLDRNEIRGIVKGALQKIQLLATARLREAREKISYP 405 (570)
Q Consensus 365 l~~~------------------~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 405 (570)
+++| +++++|.+++..|..+..++.|+.+++++|++.+.+|
T Consensus 506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 4433 2233335555555555555555555655555554444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.5e-38 Score=363.06 Aligned_cols=389 Identities=22% Similarity=0.253 Sum_probs=279.2
Q ss_pred CCCceEEEEecCCcccccccccccCCCC-C-CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChh-hccccccCccCC
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGPG-F-TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIE-QLFDSVQDYGKL 77 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~~-~-~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L 77 (570)
|++||.|++++|. ....+|.++. . ++||+|++++|.+....+...+++|++|+|++|.+. .+|..++.+++|
T Consensus 92 l~~L~~L~Ls~n~-----~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQ-----LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCc-----cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 4678888886543 3346777665 3 888888888888763333345778888888888887 567788888888
Q ss_pred cEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEec
Q 044933 78 NQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLD 154 (570)
Q Consensus 78 ~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~ 154 (570)
++|++++|. +.+..+..+ .++++|++|+|++|.+.+.+|..+ .+++|++|+|++|.....+|.... ++|++|+++
T Consensus 167 ~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 167 KVLDLGGNV-LVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CEEECccCc-ccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 888888876 555444566 788888888888888888888777 788888888888877666665433 688888888
Q ss_pred CcCCC-cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cC
Q 044933 155 GTALE-ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EV 232 (570)
Q Consensus 155 ~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l 232 (570)
+|.++ .+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+. .+
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 88887 57788888888999999888888888888888888999999888888888888888889999999888887 66
Q ss_pred CchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCccc-ccCccccCC
Q 044933 233 PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNNFE-RIPESIIQL 310 (570)
Q Consensus 233 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l 310 (570)
|..+..+++|+.|++++|. .....|..+..+++|+.|++++|.+.+ +|.++..+++|+.|++++|.+. .+|..+..+
T Consensus 325 ~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ChhHhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 7778888899999998888 555666677778888888888887765 5665555555666666655554 445555555
Q ss_pred CCcCEEcccCccccCcCCC---------------------------CCcccceecccccccCCcCCCCCCCCCcccccee
Q 044933 311 SNLERLFIRYCERLQSLPK---------------------------LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTL 363 (570)
Q Consensus 311 ~~L~~L~Ls~~~~l~~lp~---------------------------~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 363 (570)
++|+.|++++|+..+.+|. .+++|+.|++++|.....++..+ ..++|+.|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L 480 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENL 480 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEE
Confidence 5555555555554444432 22344444444444433333322 12345555
Q ss_pred eccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCC
Q 044933 364 YLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREKISYPS 406 (570)
Q Consensus 364 ~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 406 (570)
++++| .+.+..|..+.+++.|+.+++++|.+.+.+|.
T Consensus 481 ~ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 481 DLSRN------QFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred ECcCC------ccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence 55544 66666777777777777777777777655554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-32 Score=275.17 Aligned_cols=355 Identities=19% Similarity=0.169 Sum_probs=274.1
Q ss_pred CCccEEEecCCCCCCCCCCc--CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEE
Q 044933 30 TEVRYLHWHGYPLKLLPSNI--HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILN 107 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ 107 (570)
..-+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+|.+|. ++.+...++ +.++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhhh
Confidence 66778899999888776553 8889999999999999998888888889999998865 888877777 7888999999
Q ss_pred ecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCC
Q 044933 108 LSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLK 183 (570)
Q Consensus 108 L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~ 183 (570)
|+.|.+...--..+ .-.++++|+|++|...+.-...+. .+|..|.|++|+|+.+|.- |.++++|+.|+|..|++--
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 99887555433333 567889999998764332211111 5888899999999998864 6679999999998887544
Q ss_pred cCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCCCCCCccccccc
Q 044933 184 SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVD 262 (570)
Q Consensus 184 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 262 (570)
.--.+|.++++|+.|.|..|.+...-...|-.|.++++|+|..|++.++.. ++.+++.|+.|++++|. +....+.+++
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhh
Confidence 445568888999999998888877777788888999999999999887755 67889999999999998 4444456678
Q ss_pred cCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcccccC-ccccCCCCcCEEcccCccccCcCCC------CCccc
Q 044933 263 GLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIP-ESIIQLSNLERLFIRYCERLQSLPK------LPCNL 334 (570)
Q Consensus 263 ~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~~l~~lp~------~~~~L 334 (570)
..++|+.|+|+.|+++.+ +..|..++.|++|+|++|.+..+. ..+..+++|+.|||++|.....+.+ .+++|
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 888999999999999987 567888899999999999988775 4577889999999998876554432 46788
Q ss_pred ceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHH
Q 044933 335 LSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLR 396 (570)
Q Consensus 335 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~ 396 (570)
+.|++.+ +.+..++.-.. ..++.|+.|++.+| .|..+.+++|..+ .|+.|-+.
T Consensus 395 rkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~N------aiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 395 RKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDN------AIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hheeecC-ceeeecchhhh-ccCcccceecCCCC------cceeecccccccc-hhhhhhhc
Confidence 8888887 45566654322 25677888877655 8888888888888 77766543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3e-30 Score=259.39 Aligned_cols=349 Identities=20% Similarity=0.183 Sum_probs=284.3
Q ss_pred eEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhcc-ccccCccCCcEEc
Q 044933 5 RILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLF-DSVQDYGKLNQII 81 (570)
Q Consensus 5 r~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~ 81 (570)
+.|++++|. ..-.-+.+|.. ++|+.+.+..|.+..+|... ...+|+.|+|.+|.|..+. +.++.++.|+.||
T Consensus 81 ~~LdlsnNk-----l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 81 QTLDLSNNK-----LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeeccccc-----cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 568887653 22223445555 99999999999999999887 4567999999999999884 5789999999999
Q ss_pred cCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC---CCccEEEecCcC
Q 044933 82 TAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP---GNITTMHLDGTA 157 (570)
Q Consensus 82 Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~---~~L~~L~L~~~~ 157 (570)
||.|. +++++.++| ..-.++++|+|++|.+.+.-...+ .+.+|.+|.|+.|. ++.+|.... ++|+.|+|..|.
T Consensus 156 LSrN~-is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 156 LSRNL-ISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhch-hhcccCCCC-CCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc
Confidence 99976 999999999 778899999999999877666666 78899999999965 666665433 789999999999
Q ss_pred CCcC-ChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-Cch
Q 044933 158 LEEL-PSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-PPS 235 (570)
Q Consensus 158 i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~ 235 (570)
|..+ -..|..+++|+.|.|..|.+...-...|..|.++++|+|+.|.....-..++-++++|+.|+++.|.|..+ +++
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 9877 34688999999999999998777777889999999999999988777777888999999999999999966 557
Q ss_pred hccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCccc-cc---CccccCC
Q 044933 236 IVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFE-RI---PESIIQL 310 (570)
Q Consensus 236 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~-~l---p~~l~~l 310 (570)
+..+++|+.|+|++|.+ +.-.+.+|..+..|++|+|++|.+..+ ..+|.++++|+.|||++|.++ .| ...+..+
T Consensus 313 WsftqkL~~LdLs~N~i-~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRI-TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhcccceeEecccccc-ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 88899999999999994 444456688899999999999999986 567888999999999999976 23 3457789
Q ss_pred CCcCEEcccCccccCcCCC----CCcccceecccccccCCcCCCCCCCCCccccceeecc
Q 044933 311 SNLERLFIRYCERLQSLPK----LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLS 366 (570)
Q Consensus 311 ~~L~~L~Ls~~~~l~~lp~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 366 (570)
+.|+.|++.+| .++++|. .+..|+.|++.++.....-+..|... .|++|.+.
T Consensus 392 ~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~n 447 (873)
T KOG4194|consen 392 PSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVMN 447 (873)
T ss_pred hhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhhc
Confidence 99999999985 4677774 56789999998866555555555332 56666554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.9e-31 Score=267.11 Aligned_cols=306 Identities=24% Similarity=0.328 Sum_probs=236.3
Q ss_pred eEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEEcc
Q 044933 5 RILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIIT 82 (570)
Q Consensus 5 r~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L 82 (570)
|-.++++|.+ ....+|..... +.+++|.+....+..+|... .+.+|++|.+++|++..+...+..++.|+.+++
T Consensus 10 rGvDfsgNDF----sg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 10 RGVDFSGNDF----SGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ecccccCCcC----CCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 4455655443 34678988888 99999999999999999987 899999999999999999989999999999999
Q ss_pred CcccCCCCCCC-CcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC---CCccEEEecCcC
Q 044933 83 AAFNFFSKIPT-PSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP---GNITTMHLDGTA 157 (570)
Q Consensus 83 s~~~~l~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~---~~L~~L~L~~~~ 157 (570)
.+|+ +..... +.+ -++..|..|||++|+ +...|..+ .-+++-+|+||+|+ +..+|.... ..|-+|+|++|+
T Consensus 86 R~N~-LKnsGiP~di-F~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 86 RDNN-LKNSGIPTDI-FRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hccc-cccCCCCchh-cccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch
Confidence 9987 533322 355 679999999999988 66788888 88999999999965 677776444 677889999999
Q ss_pred CCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCC-CCCcchhhcCCCcCceeccccccCccCCchh
Q 044933 158 LEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSN-LQRLPEELGNLEALDILHAIGTSITEVPPSI 236 (570)
Q Consensus 158 i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~-~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l 236 (570)
+..+|+-+..+..|++|+|++|.+.-.--..+..+++|++|.+++... +..+|..+..+.+|..+|++.|++..+|..+
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl 241 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL 241 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH
Confidence 999999999999999999999986432212233578888888887654 3568888999999999999999999999999
Q ss_pred ccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCccc--ccCccccCCCCcC
Q 044933 237 VRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFE--RIPESIIQLSNLE 314 (570)
Q Consensus 237 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~ 314 (570)
.++++|+.|+||+|++..... ......+|++|+||.|+++.+|+++..++.|+.|.+.+|+++ .||..|+.+.+|+
T Consensus 242 y~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNM--TEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhhhheeccCcCceeeeec--cHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 999999999999998544321 123445666666666666666666666666666666666543 5565555555555
Q ss_pred EEcccC
Q 044933 315 RLFIRY 320 (570)
Q Consensus 315 ~L~Ls~ 320 (570)
.+..++
T Consensus 320 vf~aan 325 (1255)
T KOG0444|consen 320 VFHAAN 325 (1255)
T ss_pred HHHhhc
Confidence 555554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.1e-30 Score=263.99 Aligned_cols=299 Identities=24% Similarity=0.370 Sum_probs=264.9
Q ss_pred cCCCCC-CCccEEEecCCCCC--CCCCC-cCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCccccc
Q 044933 24 FQGPGF-TEVRYLHWHGYPLK--LLPSN-IHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQH 99 (570)
Q Consensus 24 p~~~~~-~~L~~L~l~~~~l~--~lp~~-~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~ 99 (570)
-..+.. +.||.+.+..|.++ .+|.. |.+..|..|||++|+++..|.++...+++-+|+||+|+ +..+|++-| .+
T Consensus 71 hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-in 148 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-IN 148 (1255)
T ss_pred hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-Hh
Confidence 344555 77788888888776 46765 59999999999999999999999999999999999976 999998877 99
Q ss_pred CCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCC----CCCCCCCCCCCccEEEecCcCCC--cCChhccCCCCCC
Q 044933 100 LNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSK----LKRLPEISPGNITTMHLDGTALE--ELPSSIECLSKLS 172 (570)
Q Consensus 100 l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~----~~~~p~~~~~~L~~L~L~~~~i~--~lp~~~~~l~~L~ 172 (570)
++.|-.|||++|+ +..+|+.+ .+.+|++|+|++|.. ++++|.. .+|+.|.+++++=+ .+|.++..+.+|.
T Consensus 149 LtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm--tsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM--TSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred hHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc--hhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 9999999999987 67788888 899999999999863 3556654 47999999998755 7999999999999
Q ss_pred EEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCC
Q 044933 173 HLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKG 252 (570)
Q Consensus 173 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~ 252 (570)
.+|++.|. +..+|+.+.++++|+.|+|++|.+. .+....+...+|++|++++|+++.+|.++.++++|+.|.+.+|++
T Consensus 226 dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 226 DVDLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred hccccccC-CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 99999876 6789999999999999999998764 344455667889999999999999999999999999999999997
Q ss_pred CCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCC
Q 044933 253 LSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPK 329 (570)
Q Consensus 253 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~ 329 (570)
.-..+|..++.+.+|+.+..++|.+.-+|+.+..+..|+.|.|+.|++.++|..|.-++.|+.||+..|+.+---|.
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999988766554
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=2.5e-25 Score=259.75 Aligned_cols=311 Identities=30% Similarity=0.415 Sum_probs=263.0
Q ss_pred CCceEEEEecCCcccccccccccCCCCCCCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCC-hhhccccccCccCCcE
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGFTEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSN-IEQLFDSVQDYGKLNQ 79 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~-l~~l~~~~~~l~~L~~ 79 (570)
.+||.|.+.++ ....+|..+...+|+.|++.++.++.+|..+ .+++|++|+|+++. ++.+|. +..+++|+.
T Consensus 589 ~~Lr~L~~~~~------~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKY------PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET 661 (1153)
T ss_pred cccEEEEecCC------CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence 36888888542 3467888875599999999999999998877 79999999999875 667764 778999999
Q ss_pred EccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCC
Q 044933 80 IITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALE 159 (570)
Q Consensus 80 L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~ 159 (570)
|+|++|..+..+|. ++ ..+++|+.|++++|..++.+|..+++++|+.|++++|..++.+|... .+|++|++++|.++
T Consensus 662 L~L~~c~~L~~lp~-si-~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~-~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 662 LKLSDCSSLVELPS-SI-QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS-TNISWLDLDETAIE 738 (1153)
T ss_pred EEecCCCCccccch-hh-hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc-CCcCeeecCCCccc
Confidence 99999988887764 56 88999999999999999999998899999999999999999888764 49999999999999
Q ss_pred cCChhccCCCCCCEEeccCCCCCC-------cCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc-cCcc
Q 044933 160 ELPSSIECLSKLSHLGLADCKSLK-------SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT-SITE 231 (570)
Q Consensus 160 ~lp~~~~~l~~L~~L~L~~~~~~~-------~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n-~i~~ 231 (570)
.+|..+ .+++|+.|.+.++.... ..+......++|+.|++++|.....+|..++++++|+.|++++| .+..
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 999876 58899999998754211 11112234578999999999999999999999999999999987 5678
Q ss_pred CCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCc-ccccCccccCC
Q 044933 232 VPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNN-FERIPESIIQL 310 (570)
Q Consensus 232 l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l 310 (570)
+|..+ .+++|+.|++++|..+.. +|. ..++|+.|+|++|.++++|.++..+++|+.|+|++|+ ++.+|..+..+
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~-~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRT-FPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred eCCCC-CccccCEEECCCCCcccc-ccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 88766 799999999999974432 222 2468999999999999999999999999999999965 88999889999
Q ss_pred CCcCEEcccCccccCcCC
Q 044933 311 SNLERLFIRYCERLQSLP 328 (570)
Q Consensus 311 ~~L~~L~Ls~~~~l~~lp 328 (570)
++|+.+++++|..+..++
T Consensus 893 ~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 893 KHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCCCeeecCCCccccccc
Confidence 999999999999887553
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.9e-28 Score=236.71 Aligned_cols=112 Identities=24% Similarity=0.306 Sum_probs=81.7
Q ss_pred cCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCCCC---cccceecccccccCCcCCCCCCCCC
Q 044933 280 LPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLP---CNLLSLDAHHCTALESLPGLFPSSD 356 (570)
Q Consensus 280 ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~~---~~L~~L~l~~c~~l~~~~~~~~~~~ 356 (570)
+|..+..+++|..|+|++|-+.++|..++.+..|+.|++++| ..+.+|... ..++.+-+++ ..+..++.. ....
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~-~l~n 503 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPS-GLKN 503 (565)
T ss_pred chHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChH-Hhhh
Confidence 344556788999999999999999999999999999999997 566777643 3334333443 445555432 1235
Q ss_pred ccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 044933 357 ESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 357 ~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
+.+|..|++.+| .+. .+|..+.++++|+.+++.+|++.
T Consensus 504 m~nL~tLDL~nN------dlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNN------DLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCC------chh-hCChhhccccceeEEEecCCccC
Confidence 667888888665 665 45667899999999999999976
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1e-28 Score=238.46 Aligned_cols=386 Identities=21% Similarity=0.294 Sum_probs=222.2
Q ss_pred ccccCCCCC-CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccc
Q 044933 21 MSYFQGPGF-TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQ 98 (570)
Q Consensus 21 ~~lp~~~~~-~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~ 98 (570)
.++.+++.. ..|..|..++|.+..+|+.+ .+..++.|+.++|++.++|+.+..+..|+.++.++|+ +.++++ ++ +
T Consensus 58 ~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~-~i-~ 134 (565)
T KOG0472|consen 58 EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPD-SI-G 134 (565)
T ss_pred hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCc-hH-H
Confidence 444455555 66677777777777666665 5666667777777777777766667777777766654 444442 33 4
Q ss_pred cCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCC----------------------CCCCCCCCC--CCccEEEe
Q 044933 99 HLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSK----------------------LKRLPEISP--GNITTMHL 153 (570)
Q Consensus 99 ~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~----------------------~~~~p~~~~--~~L~~L~L 153 (570)
.+..|+.|+..+|++.+ +|..+ .+.+|..|++.+|.. ++.+|...+ .+|+.|+|
T Consensus 135 ~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred HHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence 44455555555544322 22222 444444444444332 333332222 45555555
Q ss_pred cCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccC-CCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC
Q 044933 154 DGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLC-KLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV 232 (570)
Q Consensus 154 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l 232 (570)
..|.|..+| +|+.+..|+.|.++.|. ...+|.... +++++.+||+..|+ ++++|+.+..+.+|+.||+++|.|+.+
T Consensus 214 ~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 214 RRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred hhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccC
Confidence 555555555 45555555555555544 344554443 67888888888854 567788888888888888888888888
Q ss_pred CchhccCCCCcEEEeccCCCCCC------------------------------------c-cc---cccccCCCCCeeec
Q 044933 233 PPSIVRLKRVRGIYFGRNKGLSL------------------------------------P-IT---FSVDGLQNLRDLNL 272 (570)
Q Consensus 233 ~~~l~~l~~L~~L~l~~n~~~~~------------------------------------~-~~---~~~~~l~~L~~L~L 272 (570)
|.+++++ .|+.|-+.||.+.+. . .+ .....+.+.+.|++
T Consensus 291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~ 369 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV 369 (565)
T ss_pred Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence 8888888 888888888863220 0 00 01123345667777
Q ss_pred ccCCCCCcCcccCCCCC---ccEEEccCCcccccCc------------------------cccCCCCcCEEcccCccccC
Q 044933 273 NDCGIMELPESLGLLSS---VTTLHLEGNNFERIPE------------------------SIIQLSNLERLFIRYCERLQ 325 (570)
Q Consensus 273 s~n~l~~ip~~l~~l~~---L~~L~L~~n~l~~lp~------------------------~l~~l~~L~~L~Ls~~~~l~ 325 (570)
++-+++.+|+....-.. ....++++|++.++|. .++.+++|..|+|++ +.+.
T Consensus 370 s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln 448 (565)
T KOG0472|consen 370 SDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLN 448 (565)
T ss_pred cccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhh
Confidence 77777766654322222 4555666665555543 445566666666665 3455
Q ss_pred cCCCC---CcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhcC
Q 044933 326 SLPKL---PCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREKI 402 (570)
Q Consensus 326 ~lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 402 (570)
++|.- ...|+.|+++.+ ....+|... .....++.+.. .+|++..+.+..+.++.+|.++|+.+|.+.
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~--y~lq~lEtlla------s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq- 518 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFN-RFRMLPECL--YELQTLETLLA------SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ- 518 (565)
T ss_pred hcchhhhhhhhhheeccccc-ccccchHHH--hhHHHHHHHHh------ccccccccChHHhhhhhhcceeccCCCchh-
Confidence 55532 234566666553 333333221 01111222222 235777777888899999999999888766
Q ss_pred CCCCCCeeEeecCCCCCcceeecCCCcEEE
Q 044933 403 SYPSLRGRGFLPWNKIPKWFSFQSAGSCVT 432 (570)
Q Consensus 403 ~~~~~~~~~~~pg~~ip~~f~~~~~~~~i~ 432 (570)
.+|...+ .+...-+....||.+.
T Consensus 519 ~IPp~Lg-------nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 QIPPILG-------NMTNLRHLELDGNPFR 541 (565)
T ss_pred hCChhhc-------cccceeEEEecCCccC
Confidence 3333222 3444455555666554
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=2.5e-26 Score=242.79 Aligned_cols=377 Identities=20% Similarity=0.227 Sum_probs=255.8
Q ss_pred CceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEE
Q 044933 3 NLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQI 80 (570)
Q Consensus 3 ~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 80 (570)
+|+.|++++| ....+|..+.. .+|+.|.++.|-++++|... .+.+|++|.|.+|.++.+|.++..+++|+.|
T Consensus 46 ~L~~l~lsnn------~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNN------QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eeEEeecccc------ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 3788899654 44677877877 89999999999999999766 8889999999999999999999999999999
Q ss_pred ccCcccCCCCCCC--------------------------------------CcccccCCCCcE-EEecCCCCCCcC----
Q 044933 81 ITAAFNFFSKIPT--------------------------------------PSLTQHLNNLVI-LNLSGCKNLQSL---- 117 (570)
Q Consensus 81 ~Ls~~~~l~~~~~--------------------------------------~~~~~~l~~L~~-L~L~~~~~~~~~---- 117 (570)
|+++|. +..+|. ..|......|+. |+|++|......
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNL 198 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhc
Confidence 999976 555544 011111222232 555554433100
Q ss_pred C-------------Cc-cCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCC
Q 044933 118 P-------------AR-IHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLK 183 (570)
Q Consensus 118 p-------------~~-~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~ 183 (570)
+ .. ..-++|+.|..+.|...+..+.....+|++++++.+.++.+|++++.+.+|+.|+..+|.+ .
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~ 277 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-V 277 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-H
Confidence 0 00 0223444555555554444444555789999999999999999999999999999998876 6
Q ss_pred cCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhcc-------------------------
Q 044933 184 SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVR------------------------- 238 (570)
Q Consensus 184 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~------------------------- 238 (570)
.+|..+....+|+.|.+..|. +..+|...+.+++|++|++..|++..+|..+..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~ 356 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN 356 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence 677767777777777766653 345566666677777777777777766653211
Q ss_pred -CCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCc-ccCCCCCccEEEccCCcccccCccccCCCCcCEE
Q 044933 239 -LKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE-SLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 316 (570)
Q Consensus 239 -l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 316 (570)
.+.|+.|.+.+|.+. ......+.++.+|+.|+|++|++..+|+ .+.++..|++|+||||+++.+|..+..++.|++|
T Consensus 357 ~~~~Lq~LylanN~Lt-d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLT-DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCccc-ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 234556666777633 3333447788889999999998888875 5678888889999999999888888888888888
Q ss_pred cccCccccCcCCCC--CcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHH
Q 044933 317 FIRYCERLQSLPKL--PCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATAR 394 (570)
Q Consensus 317 ~Ls~~~~l~~lp~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~ 394 (570)
...+| .+..+|+. .+.|+.+|++. +.+..+...... .-++|++|++++|..+. .....|..++.+...+
T Consensus 436 ~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~------~d~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 436 RAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEAL-PSPNLKYLDLSGNTRLV------FDHKTLKVLKSLSQMD 506 (1081)
T ss_pred hhcCC-ceeechhhhhcCcceEEeccc-chhhhhhhhhhC-CCcccceeeccCCcccc------cchhhhHHhhhhhhee
Confidence 88774 45566653 46788888875 344433222111 11678999998884422 2233455555555555
Q ss_pred HHHh
Q 044933 395 LREA 398 (570)
Q Consensus 395 l~~n 398 (570)
+.-+
T Consensus 507 i~~~ 510 (1081)
T KOG0618|consen 507 ITLN 510 (1081)
T ss_pred cccC
Confidence 4433
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.6e-20 Score=205.02 Aligned_cols=262 Identities=21% Similarity=0.245 Sum_probs=204.5
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
.+-..|+++.+.++++|..+ +.+|+.|++.+|+++.+|.. .++|++|++++|+ ++.+|. ..++|+.|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccC-----cccccceeecc
Confidence 55678899999999999876 35899999999999998863 5789999999865 887762 25789999999
Q ss_pred CCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCccc
Q 044933 110 GCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGL 189 (570)
Q Consensus 110 ~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l 189 (570)
+|.+ ..+|.. ..+|+.|++++|. ++.+|... ++|+.|++++|.++.+|... .+|+.|++++|.+. .+|..
T Consensus 271 ~N~L-~~Lp~l--p~~L~~L~Ls~N~-Lt~LP~~p-~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~l- 340 (788)
T PRK15387 271 SNPL-THLPAL--PSGLCKLWIFGNQ-LTSLPVLP-PGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPTL- 340 (788)
T ss_pred CCch-hhhhhc--hhhcCEEECcCCc-cccccccc-cccceeECCCCccccCCCCc---ccccccccccCccc-ccccc-
Confidence 9874 445542 3678899999975 66677643 58999999999999988633 46788889988764 45641
Q ss_pred CCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCe
Q 044933 190 CKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRD 269 (570)
Q Consensus 190 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 269 (570)
..+|+.|++++|.+. .+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+.. +|. ..++|+.
T Consensus 341 --p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~--LP~---l~s~L~~ 406 (788)
T PRK15387 341 --PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS--LPV---LPSELKE 406 (788)
T ss_pred --ccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC--CCC---cccCCCE
Confidence 257999999998765 45543 35688889999999988864 3578999999998543 222 2368999
Q ss_pred eecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCC
Q 044933 270 LNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP 328 (570)
Q Consensus 270 L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp 328 (570)
|++++|.++.+|.. +.+|+.|++++|+++.+|..+..+++|+.|+|++|+..+..+
T Consensus 407 LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 407 LMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred EEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 99999999998864 357889999999999999999999999999999998665544
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=7.3e-20 Score=199.80 Aligned_cols=261 Identities=25% Similarity=0.249 Sum_probs=205.7
Q ss_pred eEEEEecCCcccccccccccCCCCCCCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCc
Q 044933 5 RILKFYSSMNEENKCKMSYFQGPGFTEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAA 84 (570)
Q Consensus 5 r~L~l~~~~~~~~~~~~~lp~~~~~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~ 84 (570)
..|+++.+. ...+|..+. ++|+.|.+.+|.++.+|.. +++|++|+|++|+++.+|.. .++|+.|++++
T Consensus 204 ~~LdLs~~~------LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESG------LTTLPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCC------CCcCCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 456665432 235676554 6899999999999999974 68999999999999999853 46899999999
Q ss_pred ccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChh
Q 044933 85 FNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSS 164 (570)
Q Consensus 85 ~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~ 164 (570)
|. ++.++. ..++|+.|++++|++. .+|. ..++|+.|++++|. ++.+|... .+|+.|++++|.++.+|..
T Consensus 272 N~-L~~Lp~-----lp~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~-L~~Lp~lp-~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 272 NP-LTHLPA-----LPSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQ-LASLPALP-SELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred Cc-hhhhhh-----chhhcCEEECcCCccc-cccc--cccccceeECCCCc-cccCCCCc-ccccccccccCcccccccc
Confidence 76 777663 3478999999999754 5665 35789999999975 56677643 4899999999999999863
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcE
Q 044933 165 IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRG 244 (570)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~ 244 (570)
..+|+.|+|++|++. .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|.. .++|+.
T Consensus 341 ---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~ 406 (788)
T PRK15387 341 ---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSELKE 406 (788)
T ss_pred ---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCCCE
Confidence 258999999998865 46653 357888999988755 46654 35799999999999988864 368999
Q ss_pred EEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCccc-ccCccc
Q 044933 245 IYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFE-RIPESI 307 (570)
Q Consensus 245 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~-~lp~~l 307 (570)
|++++|.+.. +|. ...+|+.|++++|+++.+|..+..+++|+.|+|++|.++ ..+..+
T Consensus 407 LdLS~N~Lss--IP~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 407 LMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred EEccCCcCCC--CCc---chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999999543 333 235789999999999999999999999999999999998 334333
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-22 Score=213.30 Aligned_cols=350 Identities=21% Similarity=0.205 Sum_probs=209.7
Q ss_pred CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
-+|+.|++++|.+...|... .+.+|+.|+++.|.|..+|.....+.+|+++.|..|. +...| .++ ..+.+|++|++
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP-~~~-~~lknl~~Ldl 121 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLP-ASI-SELKNLQYLDL 121 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCc-hhH-Hhhhccccccc
Confidence 34777777777777666665 5667777777777777777666667777777776643 44333 344 56677777777
Q ss_pred cCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCC-cCChhccCCCCCCEEeccCCCCCCcC-
Q 044933 109 SGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALE-ELPSSIECLSKLSHLGLADCKSLKSL- 185 (570)
Q Consensus 109 ~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~l- 185 (570)
++|.+ +.+|..+ .+..++.+..++|..+..++... ++.+++..+.+. .++..+..+.. .|+|.+|.+....
T Consensus 122 S~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~---ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 122 SFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS---IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL 195 (1081)
T ss_pred chhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc---chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh
Confidence 77663 3344444 56666666666653333333322 344444444333 23333333333 3444444433000
Q ss_pred ----------------CcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEecc
Q 044933 186 ----------------PSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGR 249 (570)
Q Consensus 186 ----------------p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~ 249 (570)
..-...-++|+.|+.+.|.+....+. ..-.+|+.++++++.++.+|.++..+.+|+.+...+
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccc
Confidence 00011235566666666666533322 223578888899998888888888889999998888
Q ss_pred CCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccC-C-CCcCEEcccCccccCcC
Q 044933 250 NKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQ-L-SNLERLFIRYCERLQSL 327 (570)
Q Consensus 250 n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~-l-~~L~~L~Ls~~~~l~~l 327 (570)
|.+ ...+..+....+|+.|.+..|.+..+|+....+++|++|+|..|++.++|..+.. + ..|..|+.+.++ +..+
T Consensus 274 N~l--~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~l 350 (1081)
T KOG0618|consen 274 NRL--VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTL 350 (1081)
T ss_pred hhH--HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc-cccc
Confidence 884 4455567778888888888888888888888888999999999988888864322 2 225556665543 3333
Q ss_pred CC----CCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 044933 328 PK----LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 328 p~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
|. ..+.|+.|.+.++. ++.-..+. ...+.+|+.|++++| .+..+....+.++..|+.|+|++|+++
T Consensus 351 p~~~e~~~~~Lq~LylanN~-Ltd~c~p~-l~~~~hLKVLhLsyN------rL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNH-LTDSCFPV-LVNFKHLKVLHLSYN------RLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred ccccchhhHHHHHHHHhcCc-ccccchhh-hccccceeeeeeccc------ccccCCHHHHhchHHhHHHhcccchhh
Confidence 32 34566677776633 22211111 124566777777765 555555555555555555555555544
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=5e-19 Score=194.49 Aligned_cols=247 Identities=23% Similarity=0.353 Sum_probs=146.4
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
.+...|+++++.++++|... +++|+.|+|++|+++.+|..+. ++|+.|++++|+ ++.+|. .+ .++|+.|+|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~-~l---~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPA-TL---PDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCCh-hh---hccccEEECc
Confidence 56678888888888888765 4678888888888888887654 588888888765 777653 22 3568888888
Q ss_pred CCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCccc
Q 044933 110 GCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGL 189 (570)
Q Consensus 110 ~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l 189 (570)
+|.+. .+|..+ ..+|+.|++++|. ++.+|.....+|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+
T Consensus 250 ~N~L~-~LP~~l-~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 250 INRIT-ELPERL-PSALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred CCccC-cCChhH-hCCCCEEECcCCc-cCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCccc
Confidence 87754 556544 2467777777653 445665444567777777777777665442 35666667666544 344332
Q ss_pred CCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCe
Q 044933 190 CKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRD 269 (570)
Q Consensus 190 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 269 (570)
.++|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|..+. ++|+.|++++|.+.. +|..+. .+|+.
T Consensus 324 --~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~--LP~~l~--~sL~~ 392 (754)
T PRK15370 324 --PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTN--LPENLP--AALQI 392 (754)
T ss_pred --cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCC--CCHhHH--HHHHH
Confidence 245666666665433 2444332 456666666666555554332 355555555555221 121111 23555
Q ss_pred eecccCCCCCcCccc----CCCCCccEEEccCCccc
Q 044933 270 LNLNDCGIMELPESL----GLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 270 L~Ls~n~l~~ip~~l----~~l~~L~~L~L~~n~l~ 301 (570)
|++++|++..+|..+ ..++.+..|++.+|.++
T Consensus 393 LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 393 MQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 555555555444322 22344555555555543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-20 Score=182.17 Aligned_cols=262 Identities=20% Similarity=0.257 Sum_probs=147.6
Q ss_pred EEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCC
Q 044933 34 YLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCK 112 (570)
Q Consensus 34 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 112 (570)
..+.++-.++.+|.+. ++.-++++|..|+|+.||+ .|+.+++||.|||++|+ ++.+.+.+| .++++|..|-+.+++
T Consensus 50 ~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF-~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAF-KGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhh-hhhHhhhHHHhhcCC
Confidence 3455556667777766 5667777777777777765 56777777777777755 777777777 777777777777655
Q ss_pred CCCcCCCcc--CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCC----
Q 044933 113 NLQSLPARI--HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLK---- 183 (570)
Q Consensus 113 ~~~~~p~~~--~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~---- 183 (570)
.++.+|... ++..|+.|.+.-|...-...+.+. +++..|.+.+|.++.++. ++..+..++.+.+..|....
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 556666554 677777777666542211111111 466677777777777776 57777777777777665221
Q ss_pred --------cCCcccCCCCCCCEEEE-------------------------cCCCCCCCcc-hhhcCCCcCceeccccccC
Q 044933 184 --------SLPSGLCKLKSLDVLII-------------------------DGCSNLQRLP-EELGNLEALDILHAIGTSI 229 (570)
Q Consensus 184 --------~lp~~l~~l~~L~~L~L-------------------------~~~~~~~~~p-~~l~~l~~L~~L~l~~n~i 229 (570)
..|..++.........+ +.|.....-| .-|..+++|+.|++++|.|
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 11211211111111111 1111111222 2345556666666666666
Q ss_pred ccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCc
Q 044933 230 TEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNN 299 (570)
Q Consensus 230 ~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~ 299 (570)
+.+.+ +|.++..++.|.|..|+ +.......|.++..|+.|+|.+|+|+.+ |.+|..+.+|.+|+|-.|.
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 54433 45555566666666555 3333333455555666666666666553 5555555566666555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=190.85 Aligned_cols=249 Identities=20% Similarity=0.247 Sum_probs=195.1
Q ss_pred CceEEEEecCCcccccccccccCCCCCCCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEcc
Q 044933 3 NLRILKFYSSMNEENKCKMSYFQGPGFTEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIIT 82 (570)
Q Consensus 3 ~Lr~L~l~~~~~~~~~~~~~lp~~~~~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L 82 (570)
+...|++.++ ....+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. ++|+.|+|
T Consensus 179 ~~~~L~L~~~------~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKIL------GLTTIPACIP-EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCC------CcCcCCcccc-cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 4567777542 2234565433 689999999999999998763 699999999999999987664 48999999
Q ss_pred CcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCC
Q 044933 83 AAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELP 162 (570)
Q Consensus 83 s~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp 162 (570)
++|+ +..+|. .+ .++|+.|++++|++. .+|..+ .++|+.|++++|. ++.+|.....+|+.|++++|.++.+|
T Consensus 249 s~N~-L~~LP~-~l---~s~L~~L~Ls~N~L~-~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 249 SINR-ITELPE-RL---PSALQSLDLFHNKIS-CLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALP 320 (754)
T ss_pred cCCc-cCcCCh-hH---hCCCCEEECcCCccC-cccccc-CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCC
Confidence 9976 777764 23 358999999998755 577655 3589999999975 66777666678999999999999998
Q ss_pred hhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCC
Q 044933 163 SSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRV 242 (570)
Q Consensus 163 ~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L 242 (570)
..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|..+. ..|
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL 390 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AAL 390 (754)
T ss_pred cccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHH
Confidence 7653 68999999999865 4776663 79999999999764 5776553 689999999999999998765 379
Q ss_pred cEEEeccCCCCCCc--cccccccCCCCCeeecccCCCCC
Q 044933 243 RGIYFGRNKGLSLP--ITFSVDGLQNLRDLNLNDCGIME 279 (570)
Q Consensus 243 ~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~ 279 (570)
+.|++++|++...+ ++.....++.+..|++.+|.+..
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 99999999954321 23334556889999999999874
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=8.1e-20 Score=177.04 Aligned_cols=297 Identities=19% Similarity=0.172 Sum_probs=198.2
Q ss_pred ccccCCCCCCCccEEEecCCCCCCCCCCc--CCCCcEEEECCCCChhhc-cccccCccCCcEEccCcccCCCCCCCCccc
Q 044933 21 MSYFQGPGFTEVRYLHWHGYPLKLLPSNI--HPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQIITAAFNFFSKIPTPSLT 97 (570)
Q Consensus 21 ~~lp~~~~~~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~ 97 (570)
..+|..+- +.-..++++.|.+++||+.. .+++|++|||++|+|+.| |+++++++.|..|.+.+++++++++...|
T Consensus 59 ~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F- 136 (498)
T KOG4237|consen 59 TEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF- 136 (498)
T ss_pred ccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-
Confidence 34454444 67778899999999999875 899999999999999988 67899999999999999888999998777
Q ss_pred ccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC---CCccEEEecCcC----------------
Q 044933 98 QHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP---GNITTMHLDGTA---------------- 157 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~---~~L~~L~L~~~~---------------- 157 (570)
+++..|+.|.+.-|++.-.....+ .+++|..|.+.+|. ++.++.... ..++.+.+..|.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 777777777766655433333333 45555555555432 221111000 122222222211
Q ss_pred ----------------------------------------------CCcCCh-hccCCCCCCEEeccCCCCCCcCCcccC
Q 044933 158 ----------------------------------------------LEELPS-SIECLSKLSHLGLADCKSLKSLPSGLC 190 (570)
Q Consensus 158 ----------------------------------------------i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~ 190 (570)
...-|. .|..+++|++|+|++|++...-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 111222 267788899999999988888888888
Q ss_pred CCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccc---------
Q 044933 191 KLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFS--------- 260 (570)
Q Consensus 191 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~--------- 260 (570)
.+.++++|.|.+|++...-...|.++..|++|++.+|+|+.+ |.+|..+..|..|.+-.|...-..-..+
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 899999999988887666667788888999999999999844 5577788888888887776322110000
Q ss_pred ------cccCCCCCeeecccCCCCC----cCccc-------------------------------CCCCCccEEEccCCc
Q 044933 261 ------VDGLQNLRDLNLNDCGIME----LPESL-------------------------------GLLSSVTTLHLEGNN 299 (570)
Q Consensus 261 ------~~~l~~L~~L~Ls~n~l~~----ip~~l-------------------------------~~l~~L~~L~L~~n~ 299 (570)
-+....++.+.+++..+.+ .|+.. +-...-.+|.+.+|.
T Consensus 376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~ 455 (498)
T KOG4237|consen 376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNA 455 (498)
T ss_pred CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccch
Confidence 1122245566665554432 11111 112245678899999
Q ss_pred ccccCccccCCCCcCEEcccCccc
Q 044933 300 FERIPESIIQLSNLERLFIRYCER 323 (570)
Q Consensus 300 l~~lp~~l~~l~~L~~L~Ls~~~~ 323 (570)
++.+|.. .+.+| .+++++|+.
T Consensus 456 ~~~vp~~--~~~~l-~~dls~n~i 476 (498)
T KOG4237|consen 456 ITSVPDE--LLRSL-LLDLSNNRI 476 (498)
T ss_pred hcccCHH--HHhhh-hcccccCce
Confidence 9999876 56677 888888663
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5.1e-18 Score=146.77 Aligned_cols=167 Identities=25% Similarity=0.342 Sum_probs=107.7
Q ss_pred CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccc
Q 044933 146 GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAI 225 (570)
Q Consensus 146 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 225 (570)
.+++.|.|++|.++.+|..|..+.+|+.|++++|+ .+.+|.+++.+++|+.|++ +
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnv------------------------g 87 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV------------------------G 87 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheec------------------------c
Confidence 34555555556666666666666666666666554 3444544555555554444 4
Q ss_pred cccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCc
Q 044933 226 GTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPE 305 (570)
Q Consensus 226 ~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~ 305 (570)
-|.+..+|..|+.++.|+.|++.+|......+|..|-.+..|+.|+|++|.+.-+|..++.+++|+.|.++.|.+-++|.
T Consensus 88 mnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 88 MNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred hhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 44444455555555555555555555555555556667777777888888887788888888888888888888888888
Q ss_pred cccCCCCcCEEcccCccccCcCCCCCcccceecccc
Q 044933 306 SIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHH 341 (570)
Q Consensus 306 ~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~~L~l~~ 341 (570)
.++.++.|+.|++.+|+ ++.+| +.+..|++-+
T Consensus 168 eig~lt~lrelhiqgnr-l~vlp---pel~~l~l~~ 199 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNR-LTVLP---PELANLDLVG 199 (264)
T ss_pred HHHHHHHHHHHhcccce-eeecC---hhhhhhhhhh
Confidence 88888888888888854 44443 4444455443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=3.4e-17 Score=166.22 Aligned_cols=253 Identities=22% Similarity=0.217 Sum_probs=133.5
Q ss_pred CCCCcEEEECCCCChh-----hccccccCccCCcEEccCcccCCCCCCC------CcccccCCCCcEEEecCCCCCCcCC
Q 044933 50 HPEKLVLLEMPHSNIE-----QLFDSVQDYGKLNQIITAAFNFFSKIPT------PSLTQHLNNLVILNLSGCKNLQSLP 118 (570)
Q Consensus 50 ~~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~~~------~~~~~~l~~L~~L~L~~~~~~~~~p 118 (570)
...+|++|+++++.++ .++..+...+.|+.++++++. +...+. ..+ ..+++|+.|++++|.+.+..+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHH
Confidence 4555777777777763 355556667777777777754 332111 123 556777777777777654443
Q ss_pred Ccc-CC---CCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCC-CCCCEEeccCCCCCC----cCCccc
Q 044933 119 ARI-HL---KLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECL-SKLSHLGLADCKSLK----SLPSGL 189 (570)
Q Consensus 119 ~~~-~l---~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l-~~L~~L~L~~~~~~~----~lp~~l 189 (570)
..+ .+ ++|++|++++|..... ....+...+..+ ++|+.|++++|.+.+ .++..+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~-----------------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDR-----------------GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchH-----------------HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 333 22 3366666666542210 000122233444 556666666665442 222334
Q ss_pred CCCCCCCEEEEcCCCCCC----CcchhhcCCCcCceeccccccCc-----cCCchhccCCCCcEEEeccCCCCCCccccc
Q 044933 190 CKLKSLDVLIIDGCSNLQ----RLPEELGNLEALDILHAIGTSIT-----EVPPSIVRLKRVRGIYFGRNKGLSLPITFS 260 (570)
Q Consensus 190 ~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 260 (570)
..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+. .+...+..+++|++|++++|.+........
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 445566666666655442 12233444456666666666654 223334456666777776666322111111
Q ss_pred cc----cCCCCCeeecccCCCCC-----cCcccCCCCCccEEEccCCccccc-----CccccCC-CCcCEEcccCc
Q 044933 261 VD----GLQNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLEGNNFERI-----PESIIQL-SNLERLFIRYC 321 (570)
Q Consensus 261 ~~----~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~n~l~~l-----p~~l~~l-~~L~~L~Ls~~ 321 (570)
.. ..+.|+.|++++|.+++ +...+..+++|+.+++++|.++.- ...+... +.|+.|++.++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 11 23567777777777652 334455556777777777776622 2233333 56666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=6.1e-17 Score=140.12 Aligned_cols=156 Identities=27% Similarity=0.393 Sum_probs=132.3
Q ss_pred cCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCC
Q 044933 189 LCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLR 268 (570)
Q Consensus 189 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 268 (570)
+.++.+.+.|.+++|+ +..+|..+..+.+|+.|++++|+|+++|.+++.+++|+.|+++-|+. ...|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhh
Confidence 3356677778888865 45667788899999999999999999999999999999999999883 34577899999999
Q ss_pred eeecccCCCCC--cCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCC---CCcccceecccccc
Q 044933 269 DLNLNDCGIME--LPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPK---LPCNLLSLDAHHCT 343 (570)
Q Consensus 269 ~L~Ls~n~l~~--ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~---~~~~L~~L~l~~c~ 343 (570)
.|||.+|++.+ +|..|..+..|+.|.|+.|.++-+|..++++++|+.|.+.+|.. -++|. ....|+.|.+.++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgn- 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGN- 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccc-
Confidence 99999999997 89999999999999999999999999999999999999999764 45554 2457888888874
Q ss_pred cCCcCC
Q 044933 344 ALESLP 349 (570)
Q Consensus 344 ~l~~~~ 349 (570)
.++.+|
T Consensus 184 rl~vlp 189 (264)
T KOG0617|consen 184 RLTVLP 189 (264)
T ss_pred eeeecC
Confidence 455554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=1.5e-15 Score=154.23 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=67.3
Q ss_pred EEEecCCCCC-CcCCCcc-CCCCCCEEeeeCCCCCC----CCCCCCC--CCccEEEecCcCCCc-------CChhccCCC
Q 044933 105 ILNLSGCKNL-QSLPARI-HLKLLKELDLSGCSKLK----RLPEISP--GNITTMHLDGTALEE-------LPSSIECLS 169 (570)
Q Consensus 105 ~L~L~~~~~~-~~~p~~~-~l~~L~~L~Ls~~~~~~----~~p~~~~--~~L~~L~L~~~~i~~-------lp~~~~~l~ 169 (570)
.|+|.++... ..++..+ .+..|+.|++++|.... .++.... +++++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3556555544 2333333 56668888888765321 1111111 345666666555542 122344455
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCC---CCEEEEcCCCCCC----CcchhhcCC-CcCceeccccccCc-----cCCchh
Q 044933 170 KLSHLGLADCKSLKSLPSGLCKLKS---LDVLIIDGCSNLQ----RLPEELGNL-EALDILHAIGTSIT-----EVPPSI 236 (570)
Q Consensus 170 ~L~~L~L~~~~~~~~lp~~l~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~l~~n~i~-----~l~~~l 236 (570)
+|+.|++++|.+....+..+..+.. |++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 5555555555544333333333332 5555555554431 111223333 45555555555544 122233
Q ss_pred ccCCCCcEEEeccCC
Q 044933 237 VRLKRVRGIYFGRNK 251 (570)
Q Consensus 237 ~~l~~L~~L~l~~n~ 251 (570)
..+++|++|++++|.
T Consensus 162 ~~~~~L~~L~l~~n~ 176 (319)
T cd00116 162 RANRDLKELNLANNG 176 (319)
T ss_pred HhCCCcCEEECcCCC
Confidence 334445555554444
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=5.9e-11 Score=133.19 Aligned_cols=261 Identities=27% Similarity=0.346 Sum_probs=142.3
Q ss_pred CCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccC-CCCCCCCcccccCCCCcEEEecCCCCCCcCC
Q 044933 40 YPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNF-FSKIPTPSLTQHLNNLVILNLSGCKNLQSLP 118 (570)
Q Consensus 40 ~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~-l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p 118 (570)
......|........+...+-+|.+..++... .+++|++|-+..+.. +..++...| ..++.|++|||++|...+.+|
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff-~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFF-RSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHH-hhCcceEEEECCCCCccCcCC
Confidence 44445565555667777777777777665443 344677777766543 444443334 677777777777777667777
Q ss_pred Ccc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCE
Q 044933 119 ARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDV 197 (570)
Q Consensus 119 ~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 197 (570)
..+ .+-+|++|++++ +.++.+|..++++.+|.+|++..+.....+|.....|++|++
T Consensus 589 ~~I~~Li~LryL~L~~----------------------t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSD----------------------TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hHHhhhhhhhcccccC----------------------CCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 766 465555555544 667788888888888888888888777777776777888888
Q ss_pred EEEcCCC--CCCCcchhhcCCCcCceeccccccCccCCchhccCCCCc----EEEeccCCCCCCccccccccCCCCCeee
Q 044933 198 LIIDGCS--NLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVR----GIYFGRNKGLSLPITFSVDGLQNLRDLN 271 (570)
Q Consensus 198 L~L~~~~--~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~----~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 271 (570)
|.+..-. .....-..+..+++|+.+....... .+-..+..+..|+ .+.+.++. .......+..+.+|+.|.
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELS 723 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEE
Confidence 8886543 1112223344455555555433332 1111122222222 22221111 122233355666667777
Q ss_pred cccCCCCCcC-cccCC------CCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcC
Q 044933 272 LNDCGIMELP-ESLGL------LSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSL 327 (570)
Q Consensus 272 Ls~n~l~~ip-~~l~~------l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~l 327 (570)
+.+|.+.++. .+... ++++..+...++..-..+.+..-.++|+.|.+..|+.+..+
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 6666665421 11110 12222233333332233333344566666666666655443
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=4.3e-11 Score=125.26 Aligned_cols=177 Identities=33% Similarity=0.469 Sum_probs=116.6
Q ss_pred CccEEEecCcCCCcCChhccCCC-CCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccc
Q 044933 147 NITTMHLDGTALEELPSSIECLS-KLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAI 225 (570)
Q Consensus 147 ~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 225 (570)
.++.|++.++.++++|.....+. +|+.|++++|.+ ..+|..+..+++|+.|+++.|.+. .+|...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 55566666666666666655553 666666666553 334344556666666666665433 344444456677777777
Q ss_pred cccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCc
Q 044933 226 GTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPE 305 (570)
Q Consensus 226 ~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~ 305 (570)
+|.+..+|..+.....|+.+.+++|.. ...+..+..+.++..+.+.+|++..++..++.+++++.|++++|.++.++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 777777777666666677777777741 222333566677777777777777777777788888888888888888876
Q ss_pred cccCCCCcCEEcccCccccCcCC
Q 044933 306 SIIQLSNLERLFIRYCERLQSLP 328 (570)
Q Consensus 306 ~l~~l~~L~~L~Ls~~~~l~~lp 328 (570)
+..+.+|+.|+++++.....+|
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -ccccCccCEEeccCccccccch
Confidence 7778888888888876555444
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=4.9e-11 Score=124.81 Aligned_cols=198 Identities=29% Similarity=0.391 Sum_probs=147.0
Q ss_pred EEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCC--CccEEEecCcCCCcCChhccCCCCCCEEeccCCCCC
Q 044933 105 ILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPG--NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSL 182 (570)
Q Consensus 105 ~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~--~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 182 (570)
.+++..+...........++.++.|++.++.....-+..... +|+.|++++|.+..+|..++.+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l- 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL- 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-
Confidence 577777765455555456778888888886643333333333 78889999998888887888888899999888874
Q ss_pred CcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccc
Q 044933 183 KSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVD 262 (570)
Q Consensus 183 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 262 (570)
..+|...+.++.|+.|++++|. +..+|...+.+..|++|.+++|.+...+..+..+.++..+.+.+|+.... +..++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~ 252 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhc
Confidence 4555555578888888888865 44566665666778888888887777777788888888888888773332 44567
Q ss_pred cCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccc
Q 044933 263 GLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESI 307 (570)
Q Consensus 263 ~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l 307 (570)
.+++++.|++++|.++.++. ++.+.+|+.|++++|.+..++...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence 78888889999888888876 888888899999888887665433
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.8e-12 Score=126.81 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=40.8
Q ss_pred ccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCC--cc-CCCCCCEEeeeCCC
Q 044933 71 VQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPA--RI-HLKLLKELDLSGCS 135 (570)
Q Consensus 71 ~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~--~~-~l~~L~~L~Ls~~~ 135 (570)
-+++.+|+.+.|.++. +..++.......+++++.|||++|-+..-.|- .. .+++|+.|+|+.|.
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 3467778888887755 55554333446788888888888654432221 11 67888888888764
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.9e-12 Score=131.68 Aligned_cols=193 Identities=28% Similarity=0.390 Sum_probs=122.5
Q ss_pred CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEE
Q 044933 122 HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLI 199 (570)
Q Consensus 122 ~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 199 (570)
.+.--...||+.|. +..+|+-.. ..|+.+.|+.|.+..+|..+..+..|.+|+|+.|+ +..+|..++.|+ |+.|.
T Consensus 73 ~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEE
Confidence 34444555666643 444443322 46667777777777777777777777777777765 456666666665 67777
Q ss_pred EcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC
Q 044933 200 IDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME 279 (570)
Q Consensus 200 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 279 (570)
+++| .++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|..... |..+. .-.|..||+|.|++..
T Consensus 150 ~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l--p~El~-~LpLi~lDfScNkis~ 225 (722)
T KOG0532|consen 150 VSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL--PEELC-SLPLIRLDFSCNKISY 225 (722)
T ss_pred EecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC--CHHHh-CCceeeeecccCceee
Confidence 7654 455667777777777777777777777777777777777777777763322 22233 2246677777777777
Q ss_pred cCcccCCCCCccEEEccCCcccccCccccC---CCCcCEEcccCc
Q 044933 280 LPESLGLLSSVTTLHLEGNNFERIPESIIQ---LSNLERLFIRYC 321 (570)
Q Consensus 280 ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~---l~~L~~L~Ls~~ 321 (570)
||-.|..|+.|++|-|.+|.+++=|..+.- ..=-++|+..-|
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 777777777777777777777766654422 223355666655
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=1e-11 Score=126.44 Aligned_cols=202 Identities=23% Similarity=0.356 Sum_probs=164.4
Q ss_pred CCCCCCCCCCC----CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcc
Q 044933 135 SKLKRLPEISP----GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLP 210 (570)
Q Consensus 135 ~~~~~~p~~~~----~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 210 (570)
..++.+|.-.. ..-...+|+.|++.++|..+..+..|+.+.|..|. ...+|..++++..|..|+|+.|.+ ..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCC
Confidence 44555553222 34567889999999999999999999999998876 578899999999999999999764 4567
Q ss_pred hhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCc
Q 044933 211 EELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSV 290 (570)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L 290 (570)
..+..++ |+.|-+++|+++.+|..++.+..|..|+.+.|.+. .++..++++.+|+.|.+..|++..+|..+.. -.|
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpL 213 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPL 213 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-Cce
Confidence 6666665 89999999999999999999999999999999843 3455688999999999999999999998884 468
Q ss_pred cEEEccCCcccccCccccCCCCcCEEcccCccccCcCCC------CCcccceecccccc
Q 044933 291 TTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPK------LPCNLLSLDAHHCT 343 (570)
Q Consensus 291 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~------~~~~L~~L~l~~c~ 343 (570)
..||++.|++..||..|..++.|++|-|.+|. +++-|. ...-.++|+..-|.
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 89999999999999999999999999999865 555443 22346778877774
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=6.6e-11 Score=111.69 Aligned_cols=131 Identities=23% Similarity=0.291 Sum_probs=88.0
Q ss_pred CCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEec
Q 044933 169 SKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFG 248 (570)
Q Consensus 169 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~ 248 (570)
+.|+.|||++|.+ ..+.++..-+|.++.|+++.|.+... ..+..+++|+.||+++|.++++...-.++-+++.|.++
T Consensus 284 q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3455566666542 33444444455666666666554432 22556667777777777777666655667777777777
Q ss_pred cCCCCCCccccccccCCCCCeeecccCCCCCc--CcccCCCCCccEEEccCCcccccCc
Q 044933 249 RNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL--PESLGLLSSVTTLHLEGNNFERIPE 305 (570)
Q Consensus 249 ~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~L~~n~l~~lp~ 305 (570)
+|.+-+. ..+..+-+|..||+++|+|..+ ...++++|.|+.|.|.+|.+..+|+
T Consensus 361 ~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 7763222 2355677888999999999875 4678999999999999999987764
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.2e-10 Score=115.32 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=101.7
Q ss_pred CCccEEEecCCCCCCCCC--Cc-CCCCcEEEECCCCChhhc---cccccCccCCcEEccCcccCCCCCCCCcccccCCCC
Q 044933 30 TEVRYLHWHGYPLKLLPS--NI-HPEKLVLLEMPHSNIEQL---FDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNL 103 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~--~~-~~~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L 103 (570)
.+||...+++++....+. .. .++++++|||++|-+... -.-...+|+|+.|+|+.|..........- ..+++|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhhhhh
Confidence 456666666666665553 12 566666666666655432 22345566666666666553222222111 345666
Q ss_pred cEEEecCCCCCCcC-CCcc-CCCCCCEEeeeCCCCCC--CCCCCCCCCccEEEecCcCCCcCC--hhccCCCCCCEEecc
Q 044933 104 VILNLSGCKNLQSL-PARI-HLKLLKELDLSGCSKLK--RLPEISPGNITTMHLDGTALEELP--SSIECLSKLSHLGLA 177 (570)
Q Consensus 104 ~~L~L~~~~~~~~~-p~~~-~l~~L~~L~Ls~~~~~~--~~p~~~~~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~ 177 (570)
+.|.|+.|.+...- -... .+|+|+.|.|.+|..+. ..+.-....|++|+|++|.+-..+ ...+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 66666666654321 1111 56666666666653221 111111234555555555555444 224445555555554
Q ss_pred CCCCCCc-CCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc--hhccCCCCcEEEeccCC
Q 044933 178 DCKSLKS-LPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP--SIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 178 ~~~~~~~-lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~--~l~~l~~L~~L~l~~n~ 251 (570)
.|.+... .|+. ..-+....+++|+.|++..|+|.+.+. .+..+++|+.|.+..|.
T Consensus 280 ~tgi~si~~~d~-------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 280 STGIASIAEPDV-------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccCcchhcCCCc-------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 4443221 1110 000112345677777777777765443 45666777777776666
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=9.5e-10 Score=123.58 Aligned_cols=262 Identities=22% Similarity=0.260 Sum_probs=143.1
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCC--hhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEE
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSN--IEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVIL 106 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~--l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 106 (570)
...|...+.++.+..++.....++|++|-+..|. +..++. .+..++.|++|||++|..+.++|. ++ +.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I-~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SI-GELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HH-hhhhhhhcc
Confidence 6778888888888777777766678888887775 555543 366788888888888776666663 44 677888888
Q ss_pred EecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCC---hhccCCCCCCEEeccCCC
Q 044933 107 NLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELP---SSIECLSKLSHLGLADCK 180 (570)
Q Consensus 107 ~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~ 180 (570)
+|+++. ...+|..+ +++.|.+|++..+..+..+|.+.. .+|++|.+.......-. ..+..+.+|+.+......
T Consensus 601 ~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 888866 44677777 788888888887776666654443 67888877665522111 123344444444443322
Q ss_pred CCCcCCcccCCCCCCC----EEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hh-----cc-CCCCcEEEecc
Q 044933 181 SLKSLPSGLCKLKSLD----VLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SI-----VR-LKRVRGIYFGR 249 (570)
Q Consensus 181 ~~~~lp~~l~~l~~L~----~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l-----~~-l~~L~~L~l~~ 249 (570)
. .+-..+..+..|. .+.+.+ ......+..+..+.+|+.|.+..+.+.+... .. .. ++++..+...+
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 1 0111112222222 222222 2223334455666666777666666643221 00 00 12233333333
Q ss_pred CCCCCCccccccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCc
Q 044933 250 NKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNN 299 (570)
Q Consensus 250 n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~ 299 (570)
+..... +......++|+.|.+..|...+ +.+....+..++.+.+..+.
T Consensus 757 ~~~~r~--l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 757 CHMLRD--LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK 805 (889)
T ss_pred cccccc--cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc
Confidence 321111 1112345677777777776554 33333334444443333333
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.9e-10 Score=108.69 Aligned_cols=204 Identities=20% Similarity=0.185 Sum_probs=123.7
Q ss_pred CCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccC
Q 044933 185 LPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGL 264 (570)
Q Consensus 185 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 264 (570)
+|..+.-+++|+.+.++.|.--.. -..-..-+.|+++.+..+.+...|. +-....+.....+.-....+.....+..+
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccCCceEEecchH
Confidence 344444556666776666642211 1111122456666666655543332 11222222222222222233333444556
Q ss_pred CCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccC--cCCCCCcccceeccccc
Q 044933 265 QNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQ--SLPKLPCNLLSLDAHHC 342 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~--~lp~~~~~L~~L~l~~c 342 (570)
..|+++|||+|.|+.+.++..-.|.++.|+++.|.|..+.. +..+++|+.||||+|.... .+..-..+++.|.++.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 78889999999999888888888999999999999888764 7888999999999865322 2223456788888877
Q ss_pred ccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhh-HHHHHHHHHHHHHHHHhhhc
Q 044933 343 TALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVK-GALQKIQLLATARLREAREK 401 (570)
Q Consensus 343 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~-~~l~~l~~L~~l~l~~n~~~ 401 (570)
+.++++++. ..+-+|..|++ .+|+|..... ..+.+++-|+.+.|.+|++.
T Consensus 362 N~iE~LSGL---~KLYSLvnLDl------~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIETLSGL---RKLYSLVNLDL------SSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhhhhh---Hhhhhheeccc------cccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 455666552 12333444444 4456665432 45678889999999999876
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=4.7e-10 Score=101.65 Aligned_cols=58 Identities=33% Similarity=0.347 Sum_probs=27.0
Q ss_pred cCCCCCeeecccCCCCCc--CcccCCCCCccEEEccCCcccccC----ccccCCCCcCEEcccC
Q 044933 263 GLQNLRDLNLNDCGIMEL--PESLGLLSSVTTLHLEGNNFERIP----ESIIQLSNLERLFIRY 320 (570)
Q Consensus 263 ~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~Ls~ 320 (570)
.+++|++|++++|++.++ -..+..+++|+.|+|.+|.++.-+ ..+..+|+|+.||-..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 345555555555555543 234556777888888888777554 2456778888887654
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=4.4e-11 Score=115.45 Aligned_cols=238 Identities=17% Similarity=0.197 Sum_probs=128.3
Q ss_pred CCCCcEEEECCCCChh-----hccccccCccCCcEEccCcccCCCCCCC-----------CcccccCCCCcEEEecCCCC
Q 044933 50 HPEKLVLLEMPHSNIE-----QLFDSVQDYGKLNQIITAAFNFFSKIPT-----------PSLTQHLNNLVILNLSGCKN 113 (570)
Q Consensus 50 ~~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~~~-----------~~~~~~l~~L~~L~L~~~~~ 113 (570)
....++.|+|++|.+. .+.+.+...+.|+..++++- +++.+. .++ ..+++|++||||+|-+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL-~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKAL-LGCPKLQKLDLSDNAF 104 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHH-hcCCceeEeecccccc
Confidence 4567777888887775 24556677778888777753 333332 122 3455666666666654
Q ss_pred CCcCCCcc-----CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCCcCCc
Q 044933 114 LQSLPARI-----HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLKSLPS 187 (570)
Q Consensus 114 ~~~~p~~~-----~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~ 187 (570)
-..-+..+ ++..|+.|.|.+| .+...... ++. .|..|. . ..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~----------------------Glg~~ag~~l~~--al~~l~--~-------~k 151 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC----------------------GLGPEAGGRLGR--ALFELA--V-------NK 151 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC----------------------CCChhHHHHHHH--HHHHHH--H-------Hh
Confidence 43322222 3444444444443 33311100 000 000000 0 01
Q ss_pred ccCCCCCCCEEEEcCCCCCC----CcchhhcCCCcCceeccccccCc--c---CCchhccCCCCcEEEeccCCCCC---C
Q 044933 188 GLCKLKSLDVLIIDGCSNLQ----RLPEELGNLEALDILHAIGTSIT--E---VPPSIVRLKRVRGIYFGRNKGLS---L 255 (570)
Q Consensus 188 ~l~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~i~--~---l~~~l~~l~~L~~L~l~~n~~~~---~ 255 (570)
.+.+-+.|+++...+|..-. .+...+...+.|+.+.+..|.|. . +-..+..+++|++|+|..|.+.. .
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 12223445555554443321 12234455556666666666654 1 22345667777777777776322 1
Q ss_pred ccccccccCCCCCeeecccCCCCC-----cCccc-CCCCCccEEEccCCccc-----ccCccccCCCCcCEEcccCccc
Q 044933 256 PITFSVDGLQNLRDLNLNDCGIME-----LPESL-GLLSSVTTLHLEGNNFE-----RIPESIIQLSNLERLFIRYCER 323 (570)
Q Consensus 256 ~~~~~~~~l~~L~~L~Ls~n~l~~-----ip~~l-~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~~~~ 323 (570)
.+...++.+++|+.|++++|.+.. +..++ ...++|+.|.|.+|.|+ .+-.++...+.|+.|+|++|+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 233445667788888888888775 22333 34688899999998886 2334556678888999988864
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=3.8e-11 Score=115.84 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=119.2
Q ss_pred CCCCCCEEeccCCCCCCcCCcc----cCCCCCCCEEEEcCCCCCCC-------------cchhhcCCCcCceeccccccC
Q 044933 167 CLSKLSHLGLADCKSLKSLPSG----LCKLKSLDVLIIDGCSNLQR-------------LPEELGNLEALDILHAIGTSI 229 (570)
Q Consensus 167 ~l~~L~~L~L~~~~~~~~lp~~----l~~l~~L~~L~L~~~~~~~~-------------~p~~l~~l~~L~~L~l~~n~i 229 (570)
.+++|++|+||+|-+-..-+.. +.++..|++|.|.+|.+... ...-.+.-+.|+++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555433322221 33445555555555543211 112234567899999999999
Q ss_pred ccCC-----chhccCCCCcEEEeccCCCCCCc---cccccccCCCCCeeecccCCCCC-----cCcccCCCCCccEEEcc
Q 044933 230 TEVP-----PSIVRLKRVRGIYFGRNKGLSLP---ITFSVDGLQNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLE 296 (570)
Q Consensus 230 ~~l~-----~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~ 296 (570)
..-+ ..+...+.|+.+.+..|.+.... ....+..+++|+.|||.+|.++. +...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 8444 35677899999999999854432 33457789999999999999985 46778888999999999
Q ss_pred CCccc-----ccCccc-cCCCCcCEEcccCccccCc--------CCCCCcccceeccccccc
Q 044933 297 GNNFE-----RIPESI-IQLSNLERLFIRYCERLQS--------LPKLPCNLLSLDAHHCTA 344 (570)
Q Consensus 297 ~n~l~-----~lp~~l-~~l~~L~~L~Ls~~~~l~~--------lp~~~~~L~~L~l~~c~~ 344 (570)
.|.+. .+-..+ ...++|+.|.+.+|..... +.. -+.|..|++++|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 99987 222223 3478999999999874432 112 57889999998754
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2e-09 Score=97.61 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
.++|.|+++++.++.+...- .+.+|+.|+|++|.|+++ +++..+++|+.|++++|. ++.+.. .+...+++|++|+|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~-I~~i~~-~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNR-ISSISE-GLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCC-CCcccc-chHHhCCcCCEEEC
Confidence 45666777777666664433 456667777777776666 356666667777776654 555532 22134666777777
Q ss_pred cCCCCCCc--CCCccCCCCCCEEeeeCCCC
Q 044933 109 SGCKNLQS--LPARIHLKLLKELDLSGCSK 136 (570)
Q Consensus 109 ~~~~~~~~--~p~~~~l~~L~~L~Ls~~~~ 136 (570)
++|++... +-....+++|++|+|.+|+.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 66664331 11111566677777766653
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=8.2e-08 Score=105.69 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=79.6
Q ss_pred CCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cCCchhccCCCCcEEEecc
Q 044933 171 LSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGR 249 (570)
Q Consensus 171 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~l~~ 249 (570)
++.|+|++|.+.+.+|..+.++++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667778887777777877878888888888888777777777788888888888888777 6777778888888888888
Q ss_pred CCCCCCccccccccC-CCCCeeecccCCC
Q 044933 250 NKGLSLPITFSVDGL-QNLRDLNLNDCGI 277 (570)
Q Consensus 250 n~~~~~~~~~~~~~l-~~L~~L~Ls~n~l 277 (570)
|. +.+.+|..+... .++..+++.+|..
T Consensus 500 N~-l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NS-LSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred Cc-ccccCChHHhhccccCceEEecCCcc
Confidence 77 566666655543 3566777777753
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=6.4e-10 Score=109.78 Aligned_cols=103 Identities=15% Similarity=0.095 Sum_probs=49.8
Q ss_pred CCCCccEEEccCCccc---ccCccccCCCCcCEEcccCccccCcC--------CCCCcccceecccccccCCcCCCCCCC
Q 044933 286 LLSSVTTLHLEGNNFE---RIPESIIQLSNLERLFIRYCERLQSL--------PKLPCNLLSLDAHHCTALESLPGLFPS 354 (570)
Q Consensus 286 ~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~~~~l~~l--------p~~~~~L~~L~l~~c~~l~~~~~~~~~ 354 (570)
+.+.|+.+++.++... ++-..-.+++.|+.|.+++|..++.. ......+..+.+.+|+.+......+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l- 422 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL- 422 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-
Confidence 3455555555555422 12222234566666666666544332 12234555666666655543222111
Q ss_pred CCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHH
Q 044933 355 SDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATA 393 (570)
Q Consensus 355 ~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l 393 (570)
..+++|+.+++.+|-.+....+.. .-.+++++++.
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~----~~~~lp~i~v~ 457 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISR----FATHLPNIKVH 457 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHH----HHhhCccceeh
Confidence 134567777777775555444432 22445555444
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=9.2e-09 Score=108.10 Aligned_cols=238 Identities=26% Similarity=0.316 Sum_probs=104.1
Q ss_pred CCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEe
Q 044933 51 PEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELD 130 (570)
Q Consensus 51 ~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ 130 (570)
+..+..+++..|.+.++-..+..+++|..+++..|. +..+... + ..+++|++|++++|.+.. +...-.++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~-l-~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENL-L-SSLVNLQVLDLSFNKITK-LEGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccc-h-hhhhcchheecccccccc-ccchhhccchhhhe
Confidence 444555555555555533344555555555555543 4444321 1 345555555555554322 22222334444455
Q ss_pred eeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCC-cccCCCCCCCEEEEcCCCCCCCc
Q 044933 131 LSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLP-SGLCKLKSLDVLIIDGCSNLQRL 209 (570)
Q Consensus 131 Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~ 209 (570)
+++ |.|+.+.. +..+..|+.+++++|.+...-+ . ...+.+++.+.+.+|.+...-
T Consensus 147 l~~----------------------N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 147 LSG----------------------NLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred ecc----------------------CcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 544 44443322 2224444455555444333222 1 234444555555544432211
Q ss_pred chhhcCCCcCceeccccccCccCCchhccCC--CCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCC
Q 044933 210 PEELGNLEALDILHAIGTSITEVPPSIVRLK--RVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLL 287 (570)
Q Consensus 210 p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l 287 (570)
.+..+..+..+++..|.+..+-. +..+. .|+.+++++|.+.... ..+..+..+..|++.++.+..+. .+...
T Consensus 203 --~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~-~~~~~ 276 (414)
T KOG0531|consen 203 --GLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLE-GLERL 276 (414)
T ss_pred --chHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccccc--ccccccccccccchhhccccccc-ccccc
Confidence 11222233333444444442221 11111 2455555555422211 22445555666666666555431 12334
Q ss_pred CCccEEEccCCccc---cc-Cc-cccCCCCcCEEcccCcc
Q 044933 288 SSVTTLHLEGNNFE---RI-PE-SIIQLSNLERLFIRYCE 322 (570)
Q Consensus 288 ~~L~~L~L~~n~l~---~l-p~-~l~~l~~L~~L~Ls~~~ 322 (570)
+.+..+.+..+.+. .. .. .....+.++...+..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred chHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 45555555555544 11 11 14455666666666654
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.6e-07 Score=103.39 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=95.8
Q ss_pred CCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeec
Q 044933 194 SLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNL 272 (570)
Q Consensus 194 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L 272 (570)
.++.|+|++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|. +.+.+|..++.+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCEEEC
Confidence 4788999999999999999999999999999999998 889899999999999999998 77788888999999999999
Q ss_pred ccCCCCC-cCcccCCC-CCccEEEccCCcc
Q 044933 273 NDCGIME-LPESLGLL-SSVTTLHLEGNNF 300 (570)
Q Consensus 273 s~n~l~~-ip~~l~~l-~~L~~L~L~~n~l 300 (570)
++|.+++ +|..++.. .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999997 78887653 5678899998863
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.50 E-value=3.6e-07 Score=92.87 Aligned_cols=166 Identities=20% Similarity=0.276 Sum_probs=104.5
Q ss_pred cCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc-cCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCC
Q 044933 189 LCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT-SITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNL 267 (570)
Q Consensus 189 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n-~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 267 (570)
+..+.+++.|++++| .+..+|. -..+|+.|.++++ .++.+|..+ .++|+.|++++|..+. .+ .++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------cccc
Confidence 344688999999988 5566662 2246888998874 455666544 3588899998885232 12 2367
Q ss_pred CeeecccCCCCCcCcccCCCCCccEEEccCCc-c--cccCccccCCCCcCEEcccCccccCcCCCCCcccceeccccc--
Q 044933 268 RDLNLNDCGIMELPESLGLLSSVTTLHLEGNN-F--ERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHC-- 342 (570)
Q Consensus 268 ~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~-l--~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~~L~l~~c-- 342 (570)
+.|+++.+....++. -.++|+.|.+.+++ . ..+|.. -.++|++|++++|......+.+|.+|+.|+++.+
T Consensus 115 e~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~ 189 (426)
T PRK15386 115 RSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQK 189 (426)
T ss_pred ceEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEeccccc
Confidence 888887766544321 12457777775443 1 122211 1268999999998866544458889999998763
Q ss_pred ccCCcCCCCCCCCCccccceeeccCCcccchhhhh
Q 044933 343 TALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIR 377 (570)
Q Consensus 343 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~ 377 (570)
..++.....+| +++ .|.+.+|++++.+.++
T Consensus 190 ~sLeI~~~sLP----~nl-~L~f~n~lkL~~~~f~ 219 (426)
T PRK15386 190 TTWNISFEGFP----DGL-DIDLQNSVLLSPDVFK 219 (426)
T ss_pred ccccCcccccc----ccc-EechhhhcccCHHHhh
Confidence 33334444443 235 7788888777776654
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.1e-09 Score=101.65 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=122.5
Q ss_pred CCccEEEecCCCCC--CCCCCcCC--CCcEEEECCCCChh--hccccccCccCCcEEccCcccCCCCCCCCcccccCCCC
Q 044933 30 TEVRYLHWHGYPLK--LLPSNIHP--EKLVLLEMPHSNIE--QLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNL 103 (570)
Q Consensus 30 ~~L~~L~l~~~~l~--~lp~~~~~--~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L 103 (570)
.+...+.+...-+. .+.+-+.+ ..|++|||++..|+ ++-.-++.|.+|+.|.|.+.. +.+-....+ +.-.+|
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~i-AkN~~L 236 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTI-AKNSNL 236 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHH-hccccc
Confidence 45555555543332 12233333 34899999999887 455567889999999998865 554433345 677889
Q ss_pred cEEEecCCCCCCcCCCcc---CCCCCCEEeeeCCCCCCCCC----CCCCCCccEEEecCcCC----CcCChhccCCCCCC
Q 044933 104 VILNLSGCKNLQSLPARI---HLKLLKELDLSGCSKLKRLP----EISPGNITTMHLDGTAL----EELPSSIECLSKLS 172 (570)
Q Consensus 104 ~~L~L~~~~~~~~~p~~~---~l~~L~~L~Ls~~~~~~~~p----~~~~~~L~~L~L~~~~i----~~lp~~~~~l~~L~ 172 (570)
+.|+|+.|.-.+...... +++.|..|+|++|......- .-..++|+.|+|+|+.= +.+..-...+++|.
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 999999987655543333 78899999999987554331 11226788888887632 23333356788888
Q ss_pred EEeccCCCCCC-cCCcccCCCCCCCEEEEcCCCCCCCcch---hhcCCCcCceeccccc
Q 044933 173 HLGLADCKSLK-SLPSGLCKLKSLDVLIIDGCSNLQRLPE---ELGNLEALDILHAIGT 227 (570)
Q Consensus 173 ~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~p~---~l~~l~~L~~L~l~~n 227 (570)
.|||++|..+. ..-..|.+++.|++|.++.|..+ .|+ .+..+++|.+|++.++
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 88888876443 22334566777888888777532 232 2345555666665443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=1.8e-08 Score=105.86 Aligned_cols=164 Identities=26% Similarity=0.269 Sum_probs=72.4
Q ss_pred EEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc
Q 044933 151 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT 230 (570)
Q Consensus 151 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~ 230 (570)
|++.+|.|+.+...+..+++|++|++++|.+...-+ +..++.|+.|++++|.+... ..+..+.+|+.+++++|.+.
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhh
Confidence 333333333333333344444444444444332221 22333344444444443221 12222445555555555555
Q ss_pred cCCch-hccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCC--CccEEEccCCcccccCccc
Q 044933 231 EVPPS-IVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLS--SVTTLHLEGNNFERIPESI 307 (570)
Q Consensus 231 ~l~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~--~L~~L~L~~n~l~~lp~~l 307 (570)
.+... ...+.+++.+.+.+|.+..... +..+..+..+++..|.++.+-. +..+. .|+.+++++|.+..++..+
T Consensus 176 ~ie~~~~~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~ 251 (414)
T KOG0531|consen 176 DIENDELSELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGL 251 (414)
T ss_pred hhhhhhhhhccchHHHhccCCchhcccc---hHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccccccc
Confidence 44332 3445555555555554222211 2222333333555555554311 11112 2666666666666665555
Q ss_pred cCCCCcCEEcccCcc
Q 044933 308 IQLSNLERLFIRYCE 322 (570)
Q Consensus 308 ~~l~~L~~L~Ls~~~ 322 (570)
..+..+..|++.+++
T Consensus 252 ~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 252 ENLKNLPVLDLSSNR 266 (414)
T ss_pred cccccccccchhhcc
Confidence 566666666666544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=2.1e-07 Score=69.19 Aligned_cols=58 Identities=33% Similarity=0.536 Sum_probs=38.1
Q ss_pred CCCCeeecccCCCCCcC-cccCCCCCccEEEccCCcccccC-ccccCCCCcCEEcccCcc
Q 044933 265 QNLRDLNLNDCGIMELP-ESLGLLSSVTTLHLEGNNFERIP-ESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~ 322 (570)
|+|++|++++|+++.+| .+|.++++|++|++++|.++.++ ..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666654 46666777777777777776664 356667777777777664
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2.1e-07 Score=69.12 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=47.5
Q ss_pred CCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCC
Q 044933 146 GNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCS 204 (570)
Q Consensus 146 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 204 (570)
++|++|++++|.++.+|. .|..+++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888888875 57888888888888888777767778888888888888875
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=3.9e-09 Score=104.35 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=86.8
Q ss_pred cCCCCCeeecccCCCCC---cCcccCCCCCccEEEccCCc-cccc--CccccCCCCcCEEcccCccccC-----cCCCCC
Q 044933 263 GLQNLRDLNLNDCGIME---LPESLGLLSSVTTLHLEGNN-FERI--PESIIQLSNLERLFIRYCERLQ-----SLPKLP 331 (570)
Q Consensus 263 ~l~~L~~L~Ls~n~l~~---ip~~l~~l~~L~~L~L~~n~-l~~l--p~~l~~l~~L~~L~Ls~~~~l~-----~lp~~~ 331 (570)
++..|+.|+.+++...+ +-.--.+.++|+.|-+++|+ ++.. ..--.+++.|+.+++..|.... ++....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45566666666654422 12223456788888888776 4422 1122467788888888876433 333445
Q ss_pred cccceecccccccCCcCCCCC---CCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044933 332 CNLLSLDAHHCTALESLPGLF---PSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREKISYPSLR 408 (570)
Q Consensus 332 ~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~ 408 (570)
+.|+.|.++.|..++...... .......|+.+.+.+|+.+.+-.++ .+..+++|+.+++-.......-+...
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-----~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-----HLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-----HHhhCcccceeeeechhhhhhhhhHH
Confidence 778888888888776552111 0123456788888888776665543 34455566655554443322222223
Q ss_pred eeEeecCCCCCccee
Q 044933 409 GRGFLPWNKIPKWFS 423 (570)
Q Consensus 409 ~~~~~pg~~ip~~f~ 423 (570)
+..-+|.-.+.++|.
T Consensus 447 ~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 447 FATHLPNIKVHAYFA 461 (483)
T ss_pred HHhhCccceehhhcc
Confidence 333344444444443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6.3e-09 Score=98.48 Aligned_cols=178 Identities=16% Similarity=0.198 Sum_probs=106.5
Q ss_pred CCccEEEecCcCCC--cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcc--hhhcCCCcCce
Q 044933 146 GNITTMHLDGTALE--ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLP--EELGNLEALDI 221 (570)
Q Consensus 146 ~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~ 221 (570)
..|++|||++..|+ .+...+..|.+|+.|.+.++++...+-..+++=.+|+.|++++|.-.+... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 56888888888877 344456778888888888888777777777778888888888887665443 24566777777
Q ss_pred eccccccCc--cCCchhcc-CCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCC
Q 044933 222 LHAIGTSIT--EVPPSIVR-LKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGN 298 (570)
Q Consensus 222 L~l~~n~i~--~l~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n 298 (570)
|+++.|.+. .+...+.. -++|..|+++|+...- ....+..-...+++|..|||+.|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl---------------------~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL---------------------QKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh---------------------hhhHHHHHHHhCCceeeeccccc
Confidence 777777654 22222222 2355555555554100 00111122234566666666665
Q ss_pred c-cc-ccCccccCCCCcCEEcccCccccCc--C--CCCCcccceeccccccc
Q 044933 299 N-FE-RIPESIIQLSNLERLFIRYCERLQS--L--PKLPCNLLSLDAHHCTA 344 (570)
Q Consensus 299 ~-l~-~lp~~l~~l~~L~~L~Ls~~~~l~~--l--p~~~~~L~~L~l~~c~~ 344 (570)
. ++ ..-..+.+++.|++|.++.|..+-. + -...++|.+|++.+|-+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 4 33 3334556677777777777753310 0 01346777777777644
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=3e-06 Score=86.19 Aligned_cols=39 Identities=26% Similarity=0.687 Sum_probs=21.0
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcc
Q 044933 170 KLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLP 210 (570)
Q Consensus 170 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 210 (570)
+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 45555555555555555433 2456666666665444444
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=2.7e-08 Score=104.51 Aligned_cols=198 Identities=19% Similarity=0.122 Sum_probs=90.9
Q ss_pred CccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCC-CCCCEEeeeCC---------CCCCCCCC
Q 044933 73 DYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHL-KLLKELDLSGC---------SKLKRLPE 142 (570)
Q Consensus 73 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l-~~L~~L~Ls~~---------~~~~~~p~ 142 (570)
-+++++.+.+-+...-.-..+-++ ..+.+|++|.|++|.+.. .-....+ ..|++|...+. ....++..
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~i-fpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISI-FPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCcee-ccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc
Confidence 345555555544331111112244 567888888888887544 1111111 12333332210 00011111
Q ss_pred CCC-CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchh-hcCCCcCc
Q 044933 143 ISP-GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEE-LGNLEALD 220 (570)
Q Consensus 143 ~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~ 220 (570)
... ..|...+.+.|++..+..++.-++.|+.|+|++|++...- .+..+++|++|||+.|.+.. +|.. ...+ .|+
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQ 235 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhh-hhe
Confidence 000 3555666666666666666666666666666666654332 34455556666665544322 2211 1111 255
Q ss_pred eeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCC
Q 044933 221 ILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGI 277 (570)
Q Consensus 221 ~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l 277 (570)
.|.+.+|.++.+.. +.++++|+.||+++|-+........+..+..|+.|+|.+|.+
T Consensus 236 ~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55555555554432 444555555555555433332222233444444555554443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.6e-07 Score=86.12 Aligned_cols=57 Identities=35% Similarity=0.485 Sum_probs=29.8
Q ss_pred CCCCCCEEeeeCCCCC---CCCCCCCCCCccEEEecCcCCC--cCChhccCCCCCCEEeccCC
Q 044933 122 HLKLLKELDLSGCSKL---KRLPEISPGNITTMHLDGTALE--ELPSSIECLSKLSHLGLADC 179 (570)
Q Consensus 122 ~l~~L~~L~Ls~~~~~---~~~p~~~~~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~ 179 (570)
++|.|++|+|+.|+.- +..| ....+|+.|-|.|+.+. ...+....+++++.|.++.|
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4555555555554322 2223 22246666666665543 34444556666666666665
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=1.5e-07 Score=99.14 Aligned_cols=180 Identities=21% Similarity=0.316 Sum_probs=118.2
Q ss_pred chhhcCCCcCceeccccccCccCCchhccC-CCCcEEEeccCC-CCCCccc---cccc---cCCCCCeeecccCCCCCcC
Q 044933 210 PEELGNLEALDILHAIGTSITEVPPSIVRL-KRVRGIYFGRNK-GLSLPIT---FSVD---GLQNLRDLNLNDCGIMELP 281 (570)
Q Consensus 210 p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l-~~L~~L~l~~n~-~~~~~~~---~~~~---~l~~L~~L~Ls~n~l~~ip 281 (570)
|-.+..+.+|++|.+.++.+..+-. +..+ ..|++|.-.+.- .+...+. ..++ ....|...+.+.|.++.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~G-L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKG-LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhh-hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 4456677888888888887764211 1111 122222211110 0000000 0011 1236778888999999888
Q ss_pred cccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCC---CCcccceecccccccCCcCCCCCCCCCcc
Q 044933 282 ESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPK---LPCNLLSLDAHHCTALESLPGLFPSSDES 358 (570)
Q Consensus 282 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 358 (570)
.++.-++.|+.|+|++|+++.+. .+..++.|++|||++|. ++.+|. .-..|+.|.+.+ +.++++-+. ..+.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn-N~l~tL~gi---e~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN-NALTTLRGI---ENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecc-cHHHhhhhH---Hhhh
Confidence 88999999999999999999887 78899999999999964 555554 335688888887 455655553 3567
Q ss_pred ccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 044933 359 YLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 359 ~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
+|+.||+++|.-...-++. .+..|..|..|.|.+|++.
T Consensus 255 sL~~LDlsyNll~~hseL~-----pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELE-----PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHhhhhcchhhh-----HHHHHHHHHHHhhcCCccc
Confidence 7888888876444443332 4677889999999999875
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=3.6e-06 Score=57.54 Aligned_cols=40 Identities=35% Similarity=0.577 Sum_probs=27.7
Q ss_pred CCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccC
Q 044933 265 QNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIP 304 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp 304 (570)
++|++|++++|+++++|..++.+++|+.|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777777665
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1.5e-06 Score=82.65 Aligned_cols=181 Identities=16% Similarity=0.177 Sum_probs=86.6
Q ss_pred CCCCcEEEECCCCChhh---ccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc--CCC
Q 044933 50 HPEKLVLLEMPHSNIEQ---LFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI--HLK 124 (570)
Q Consensus 50 ~~~~L~~L~L~~n~l~~---l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~--~l~ 124 (570)
...++++|||.+|.|.+ +..-+.++|.|++|+|+.|..-+.+. +....+.+|++|-|.|..+...-...+ .+|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 45566666666666652 33334566666666666654211111 110234456666665544332222222 455
Q ss_pred CCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhcc---CCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEc
Q 044933 125 LLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIE---CLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIID 201 (570)
Q Consensus 125 ~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~---~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 201 (570)
.++.|.++.| +++.+.+..+.++.+...+. ..+.+..+.++-|+.... ++++..+.+.
T Consensus 147 ~vtelHmS~N------------~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~ 207 (418)
T KOG2982|consen 147 KVTELHMSDN------------SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVC 207 (418)
T ss_pred hhhhhhhccc------------hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeee
Confidence 5555555554 45555555555554332221 122222222222322222 3456666666
Q ss_pred CCCCCCCc-chhhcCCCcCceeccccccCccCC--chhccCCCCcEEEeccCC
Q 044933 202 GCSNLQRL-PEELGNLEALDILHAIGTSITEVP--PSIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 202 ~~~~~~~~-p~~l~~l~~L~~L~l~~n~i~~l~--~~l~~l~~L~~L~l~~n~ 251 (570)
.|++-... .+....++.+.-|+++.++|.... ..+.+++.|+.|.++++.
T Consensus 208 e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 208 EGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 66543322 234455566667777777776332 244555555555555554
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.80 E-value=8.1e-06 Score=76.83 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCCCCeeecccCCCCC--cCc----c--cCCCCCccEEEccCCcccccC
Q 044933 264 LQNLRDLNLNDCGIME--LPE----S--LGLLSSVTTLHLEGNNFERIP 304 (570)
Q Consensus 264 l~~L~~L~Ls~n~l~~--ip~----~--l~~l~~L~~L~L~~n~l~~lp 304 (570)
.|+|..|-..+|.+.. +.. . -..++-|..|.+.||+|....
T Consensus 271 ~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 271 VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 3455555555554432 111 1 145677777778888776543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=6.6e-06 Score=90.67 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=77.0
Q ss_pred CCCCEEeccCCCCCC-cCCcccC-CCCCCCEEEEcCCCCC-CCcchhhcCCCcCceeccccccCccCCchhccCCCCcEE
Q 044933 169 SKLSHLGLADCKSLK-SLPSGLC-KLKSLDVLIIDGCSNL-QRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGI 245 (570)
Q Consensus 169 ~~L~~L~L~~~~~~~-~lp~~l~-~l~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L 245 (570)
.+|++|++++..... ..|..++ .+|+|+.|.+++-... ..+.....++++|..||+++++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 356666665543221 2222222 3677777777663332 12333445677777777777777766 556777777777
Q ss_pred EeccCCCCCCccccccccCCCCCeeecccCCCCCcC-------cccCCCCCccEEEccCCccc
Q 044933 246 YFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP-------ESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 246 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip-------~~l~~l~~L~~L~L~~n~l~ 301 (570)
.+.+=.+.+......+-.+++|+.||+|.......+ +.-..+|.|+.||.|++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 776655443333334556777777777766544322 22244778888888887765
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=1.6e-06 Score=73.28 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=66.5
Q ss_pred CceeccccccCccCCchhc---cCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEc
Q 044933 219 LDILHAIGTSITEVPPSIV---RLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHL 295 (570)
Q Consensus 219 L~~L~l~~n~i~~l~~~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L 295 (570)
+..++++.|.+..++.... ....|...++++|.+...+ +..-..++.++.|+|++|.++++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp-~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP-KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC-HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4445555555554444332 3334444556666522211 12223456778888888888888888888888888888
Q ss_pred cCCcccccCccccCCCCcCEEcccCcc
Q 044933 296 EGNNFERIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 296 ~~n~l~~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
+.|.+...|..+..+.+|..|+..++.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCc
Confidence 888888888777777777777776643
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.65 E-value=1.2e-05 Score=75.69 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=40.6
Q ss_pred CCCcEEEeccCCCCCCccccc---cccCCCCCeeecccCCCCC--c----CcccCCCCCccEEEccCCcccc-----cCc
Q 044933 240 KRVRGIYFGRNKGLSLPITFS---VDGLQNLRDLNLNDCGIME--L----PESLGLLSSVTTLHLEGNNFER-----IPE 305 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~--i----p~~l~~l~~L~~L~L~~n~l~~-----lp~ 305 (570)
|.|++.....|++..++...+ +..-.+|+.+.+..|.|.. + -..+..+.+|+.|||..|-++. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 455555555555443332211 1112355666666665542 1 1223445666677776666652 122
Q ss_pred cccCCCCcCEEcccCcc
Q 044933 306 SIIQLSNLERLFIRYCE 322 (570)
Q Consensus 306 ~l~~l~~L~~L~Ls~~~ 322 (570)
.+..++.|+.|.+.+|-
T Consensus 237 al~~W~~lrEL~lnDCl 253 (388)
T COG5238 237 ALCEWNLLRELRLNDCL 253 (388)
T ss_pred Hhcccchhhhccccchh
Confidence 33444556666666653
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=6.8e-05 Score=51.21 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=28.8
Q ss_pred CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCC
Q 044933 146 GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSL 182 (570)
Q Consensus 146 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 182 (570)
++|++|++++|+|+++|..++++++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 3688888888888888888888888888888888754
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=3.1e-05 Score=85.49 Aligned_cols=129 Identities=29% Similarity=0.317 Sum_probs=76.3
Q ss_pred CCCcEEEecCCCCC-CcCCCcc--CCCCCCEEeeeCCCCCCC-CCCC--CCCCccEEEecCcCCCcCChhccCCCCCCEE
Q 044933 101 NNLVILNLSGCKNL-QSLPARI--HLKLLKELDLSGCSKLKR-LPEI--SPGNITTMHLDGTALEELPSSIECLSKLSHL 174 (570)
Q Consensus 101 ~~L~~L~L~~~~~~-~~~p~~~--~l~~L~~L~Ls~~~~~~~-~p~~--~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 174 (570)
.+|++|+++|.... ..+|..+ .+|+|++|.++|-..... +... ..++|..||++++.++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 56666666664322 1233333 577777777776322111 1111 115777777777878777 668888888888
Q ss_pred eccCCCCCC-cCCcccCCCCCCCEEEEcCCCCCCCc--c----hhhcCCCcCceeccccccCc
Q 044933 175 GLADCKSLK-SLPSGLCKLKSLDVLIIDGCSNLQRL--P----EELGNLEALDILHAIGTSIT 230 (570)
Q Consensus 175 ~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~--p----~~l~~l~~L~~L~l~~n~i~ 230 (570)
.+.+-.+.. ..-..+.+|++|+.||+|.-...... . +.-..+++|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 887744332 11124567888888888875544322 1 11234677888888877665
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.44 E-value=0.0002 Score=64.84 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=38.6
Q ss_pred CCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCC--cCCCccCCCCCCE
Q 044933 51 PEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQ--SLPARIHLKLLKE 128 (570)
Q Consensus 51 ~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~p~~~~l~~L~~ 128 (570)
..+...+||++|.+..+ +.+..+++|.+|.|..|+ ++.+.+.-- ..+++|..|.|.+|.+.. .+-....++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNr-It~I~p~L~-~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNR-ITRIDPDLD-TFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCc-ceeeccchh-hhccccceEEecCcchhhhhhcchhccCCccce
Confidence 34445555555555544 234455555555555533 444443211 334555555555554322 2223335555555
Q ss_pred EeeeCCC
Q 044933 129 LDLSGCS 135 (570)
Q Consensus 129 L~Ls~~~ 135 (570)
|.+-+|.
T Consensus 118 Ltll~Np 124 (233)
T KOG1644|consen 118 LTLLGNP 124 (233)
T ss_pred eeecCCc
Confidence 5555543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00043 Score=62.83 Aligned_cols=124 Identities=23% Similarity=0.176 Sum_probs=65.0
Q ss_pred cEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeee
Q 044933 54 LVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLS 132 (570)
Q Consensus 54 L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls 132 (570)
=++++|.+.++..+..--.-+.....+||++|. +..++. | .++++|.+|.|.+|+++..-|... .+++|..|.|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd-l~~l~~--l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDND-LRKLDN--L-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhhccccccccceecccccc-hhhccc--C-CCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 344555555444332211123345566666654 444432 2 456666666666666554444433 34445555555
Q ss_pred CCCCCCCCCCCCCCCccEEEecCcCCCcCCh--hccCCCCCCEEeccCCCCCCcCC---cccCCCCCCCEEEEcCC
Q 044933 133 GCSKLKRLPEISPGNITTMHLDGTALEELPS--SIECLSKLSHLGLADCKSLKSLP---SGLCKLKSLDVLIIDGC 203 (570)
Q Consensus 133 ~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~lp---~~l~~l~~L~~L~L~~~ 203 (570)
+ |.|.++-+ -+..+++|++|.+-+|.....-- -.+..+++|+.||.++-
T Consensus 97 n----------------------Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 N----------------------NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred C----------------------cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5 44444432 25567777777777766433211 13566788888887653
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=2.7e-05 Score=83.63 Aligned_cols=58 Identities=29% Similarity=0.349 Sum_probs=33.4
Q ss_pred CCCCCCEEeccCCCC-CC-cCCcccCCCCCCCEEEEcCCCCCCC--cchhhcCCCcCceecc
Q 044933 167 CLSKLSHLGLADCKS-LK-SLPSGLCKLKSLDVLIIDGCSNLQR--LPEELGNLEALDILHA 224 (570)
Q Consensus 167 ~l~~L~~L~L~~~~~-~~-~lp~~l~~l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~l 224 (570)
.+++|+.|.+.+|.. +. .+-.....+++|++|++++|...+. +.....++++|+.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 377888888777763 21 1222234577788888888776532 2233344555555544
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=1.6e-05 Score=67.27 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=47.8
Q ss_pred CcCceeccccccCccCCchhcc-CCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEc
Q 044933 217 EALDILHAIGTSITEVPPSIVR-LKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHL 295 (570)
Q Consensus 217 ~~L~~L~l~~n~i~~l~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L 295 (570)
..|+..++++|.+..+|..+.. .+.++.|++++|.+.. .|..+..++.|+.|+++.|.+...|..+..+.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3444445555555555444432 2344555555554221 122255566666666666666666666666677777777
Q ss_pred cCCcccccCcc
Q 044933 296 EGNNFERIPES 306 (570)
Q Consensus 296 ~~n~l~~lp~~ 306 (570)
-+|.+..||..
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 77776666643
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.95 E-value=5.9e-05 Score=80.99 Aligned_cols=107 Identities=29% Similarity=0.375 Sum_probs=49.3
Q ss_pred CCCCCCEEeeeCCCCCCCCC---CC-CCCCccEEEecCc--CCCcCC----hhccCCCCCCEEeccCCCCCC-cCCcccC
Q 044933 122 HLKLLKELDLSGCSKLKRLP---EI-SPGNITTMHLDGT--ALEELP----SSIECLSKLSHLGLADCKSLK-SLPSGLC 190 (570)
Q Consensus 122 ~l~~L~~L~Ls~~~~~~~~p---~~-~~~~L~~L~L~~~--~i~~lp----~~~~~l~~L~~L~L~~~~~~~-~lp~~l~ 190 (570)
.++.|+.|.+.+|..+.... .. ..++|+.|+++++ .+...+ .....+++|+.|+++.+...+ ..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46777777777776555421 11 1145555555542 111111 123345666667766665321 1111121
Q ss_pred -CCCCCCEEEEcCCCCCC--CcchhhcCCCcCceecccccc
Q 044933 191 -KLKSLDVLIIDGCSNLQ--RLPEELGNLEALDILHAIGTS 228 (570)
Q Consensus 191 -~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~l~~n~ 228 (570)
.+++|+.|.+.+|..++ .+-.....+++|++|+++++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25566666655555321 111223344555555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0015 Score=61.84 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCCCeeecccCCCCCc--CcccCCCCCccEEEccCCcccccC----ccccCCCCcCEEcccCcc
Q 044933 265 QNLRDLNLNDCGIMEL--PESLGLLSSVTTLHLEGNNFERIP----ESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~Ls~~~ 322 (570)
|+|++|++++|++..+ ...+..+.+|..|++.+|..+.+- ..+.-+++|++|+-....
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 4444444444444331 122344555666666666554332 234456777777765543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00017 Score=68.45 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=71.9
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
.+.+.|++-|+.+..+.-.-.++.|+.|.|+-|+|+.+ ..+..|++|++|.|..|. +.++..-..+.++|+|+.|-|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhc
Confidence 46677788888887765555788888888888888877 457788888888888865 6666555455788888888888
Q ss_pred CCCCCCcCCCcc------CCCCCCEEe
Q 044933 110 GCKNLQSLPARI------HLKLLKELD 130 (570)
Q Consensus 110 ~~~~~~~~p~~~------~l~~L~~L~ 130 (570)
.|...+.-+..- -+++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 877666655432 466666665
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0026 Score=60.20 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCCCCeeecccCCCCCcCcccCCCCCccEEEccCC--ccc-ccCccccCCCCcCEEcccCcc
Q 044933 264 LQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGN--NFE-RIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 264 l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n--~l~-~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
+..|+.|.+.+..++++. .+-.+++|+.|.++.| +++ .++.....+++|++|++++|+
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 344445555555444421 1223556666666666 333 444344455666666666654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.92 E-value=0.026 Score=48.47 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=11.9
Q ss_pred cccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccC
Q 044933 261 VDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEG 297 (570)
Q Consensus 261 ~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~ 297 (570)
|..+++|+.+++..+ +..+ ...+.+. .|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 334444444444332 3333 2333443 555554443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.00048 Score=65.42 Aligned_cols=78 Identities=26% Similarity=0.308 Sum_probs=34.1
Q ss_pred CcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC--cccCCCCCccEEE
Q 044933 217 EALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP--ESLGLLSSVTTLH 294 (570)
Q Consensus 217 ~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip--~~l~~l~~L~~L~ 294 (570)
.+.+.|++.++.+..+.- ...++.|++|.|+-|++.+.. .+..+++|++|+|..|.|.++. .-+.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445556666665554321 234555555555555532221 1334444444444444444431 2233444444444
Q ss_pred ccCC
Q 044933 295 LEGN 298 (570)
Q Consensus 295 L~~n 298 (570)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 4443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0064 Score=34.55 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=12.4
Q ss_pred CccEEEccCCcccccCcccc
Q 044933 289 SVTTLHLEGNNFERIPESII 308 (570)
Q Consensus 289 ~L~~L~L~~n~l~~lp~~l~ 308 (570)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.13 E-value=0.064 Score=45.94 Aligned_cols=119 Identities=12% Similarity=0.136 Sum_probs=44.6
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCc
Q 044933 165 IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVR 243 (570)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~ 243 (570)
|..+.+|+.+.+.. .....-...|.++++|+.+.+..+ ....-...+.++++|+.+.+.. .+..++. .+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44555666666553 222233334555556666666542 2222223455555666666644 3333333 344566666
Q ss_pred EEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCc
Q 044933 244 GIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSV 290 (570)
Q Consensus 244 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L 290 (570)
.+.+..+ ........+.++ +|+.+.+.. .+..+ ...|.++++|
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666543 222223335555 666666654 33333 2344444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.03 E-value=0.011 Score=33.52 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=13.3
Q ss_pred CccEEEecCcCCCcCChhccC
Q 044933 147 NITTMHLDGTALEELPSSIEC 167 (570)
Q Consensus 147 ~L~~L~L~~~~i~~lp~~~~~ 167 (570)
+|++|+|++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666777766666543
No 73
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=94.66 E-value=0.027 Score=30.89 Aligned_cols=20 Identities=45% Similarity=0.775 Sum_probs=18.0
Q ss_pred CcEEEECCCCChhhcccccc
Q 044933 53 KLVLLEMPHSNIEQLFDSVQ 72 (570)
Q Consensus 53 ~L~~L~L~~n~l~~l~~~~~ 72 (570)
+|++|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999863
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.26 E-value=0.028 Score=29.63 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=5.9
Q ss_pred CccEEEccCCcccccC
Q 044933 289 SVTTLHLEGNNFERIP 304 (570)
Q Consensus 289 ~L~~L~L~~n~l~~lp 304 (570)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.17 E-value=0.0017 Score=68.81 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=77.1
Q ss_pred hccCCCCCCEEeccCCCCCCcC----CcccCCC-CCCCEEEEcCCCCCCC----cchhhcCCCcCceeccccccCc----
Q 044933 164 SIECLSKLSHLGLADCKSLKSL----PSGLCKL-KSLDVLIIDGCSNLQR----LPEELGNLEALDILHAIGTSIT---- 230 (570)
Q Consensus 164 ~~~~l~~L~~L~L~~~~~~~~l----p~~l~~l-~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~l~~n~i~---- 230 (570)
.+.....|+.|++++|.+...- -..+... ..+++|++..|..... +.+.+.....++.++++.|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 3445556666666665543210 0111121 3455555555554432 2344445566666666666653
Q ss_pred -cCCchhc----cCCCCcEEEeccCCCCCCc---cccccccCCC-CCeeecccCCCCC-----cCcccCCC-CCccEEEc
Q 044933 231 -EVPPSIV----RLKRVRGIYFGRNKGLSLP---ITFSVDGLQN-LRDLNLNDCGIME-----LPESLGLL-SSVTTLHL 295 (570)
Q Consensus 231 -~l~~~l~----~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~-L~~L~Ls~n~l~~-----ip~~l~~l-~~L~~L~L 295 (570)
.++..+. ...++++|++++|...... ....+...+. +..|+++.|.+.+ +...+..+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 1222222 3455666666665532211 1112233333 5556666666653 23334444 55666666
Q ss_pred cCCccc-----ccCccccCCCCcCEEcccCcc
Q 044933 296 EGNNFE-----RIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 296 ~~n~l~-----~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
+.|.|+ .+...+..++.++.+.++.|.
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 666665 233445555666666666654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.07 E-value=0.11 Score=27.39 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=6.1
Q ss_pred CccEEEecCcCCCcCC
Q 044933 147 NITTMHLDGTALEELP 162 (570)
Q Consensus 147 ~L~~L~L~~~~i~~lp 162 (570)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555555443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=0.048 Score=49.85 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=65.1
Q ss_pred cCCCCCCCCCCc-CCCCcEEEECCCCChhhc-cccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCC
Q 044933 38 HGYPLKLLPSNI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQ 115 (570)
Q Consensus 38 ~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~ 115 (570)
+.|..-++|... .-..++.++-+++.|... -+.+.+++.++.|.+.+|.++.+.--..+.+-.++|+.|+|++|..++
T Consensus 86 d~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 86 DYNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 334333566553 445789999999998855 356778888888888888876554333332456888899998887665
Q ss_pred cCCCcc--CCCCCCEEeeeC
Q 044933 116 SLPARI--HLKLLKELDLSG 133 (570)
Q Consensus 116 ~~p~~~--~l~~L~~L~Ls~ 133 (570)
+-.-.. .+++|+.|.|.+
T Consensus 166 ~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 166 DGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hhHHHHHHHhhhhHHHHhcC
Confidence 432222 677888887776
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.66 E-value=0.25 Score=29.11 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=13.2
Q ss_pred CCCccEEEccCCcccccCcc
Q 044933 287 LSSVTTLHLEGNNFERIPES 306 (570)
Q Consensus 287 l~~L~~L~L~~n~l~~lp~~ 306 (570)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777777644
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.66 E-value=0.25 Score=29.11 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=13.2
Q ss_pred CCCccEEEccCCcccccCcc
Q 044933 287 LSSVTTLHLEGNNFERIPES 306 (570)
Q Consensus 287 l~~L~~L~L~~n~l~~lp~~ 306 (570)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777777644
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.95 E-value=0.0068 Score=64.29 Aligned_cols=113 Identities=22% Similarity=0.221 Sum_probs=65.9
Q ss_pred cCCCCCCCEEEEcCCCCCC----Ccchh----hcCCCcCceeccccccCcc-----CCchhccCCC-CcEEEeccCCCCC
Q 044933 189 LCKLKSLDVLIIDGCSNLQ----RLPEE----LGNLEALDILHAIGTSITE-----VPPSIVRLKR-VRGIYFGRNKGLS 254 (570)
Q Consensus 189 l~~l~~L~~L~L~~~~~~~----~~p~~----l~~l~~L~~L~l~~n~i~~-----l~~~l~~l~~-L~~L~l~~n~~~~ 254 (570)
+.....++.++++.|.+.. .++.. +....++++|.+.++.++. +...+...+. +..+++..|....
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 3444555555555554431 11122 2345667777777777661 1123334444 5667777777332
Q ss_pred C---ccccccccC-CCCCeeecccCCCCC-----cCcccCCCCCccEEEccCCccc
Q 044933 255 L---PITFSVDGL-QNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 255 ~---~~~~~~~~l-~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~n~l~ 301 (570)
. .....+..+ +.++.++++.|.+++ +...+..++.+++|.++.|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 122234444 577888888888875 3556677788888888888875
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.77 E-value=0.67 Score=27.22 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCcCceeccccccCccCCchh
Q 044933 216 LEALDILHAIGTSITEVPPSI 236 (570)
Q Consensus 216 l~~L~~L~l~~n~i~~l~~~l 236 (570)
+++|+.|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777888888877777643
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.77 E-value=0.67 Score=27.22 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCcCceeccccccCccCCchh
Q 044933 216 LEALDILHAIGTSITEVPPSI 236 (570)
Q Consensus 216 l~~L~~L~l~~n~i~~l~~~l 236 (570)
+++|+.|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777888888877777643
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.47 E-value=0.049 Score=50.82 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=63.2
Q ss_pred ccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEE
Q 044933 237 VRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 316 (570)
Q Consensus 237 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 316 (570)
......+.||++.|+.. ..-..|+.++.|..|+++.|.+.-+|.+++.+..+..+++..|..+..|.+++..+.++++
T Consensus 39 ~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34455556666666521 1122355667778888888888888888888888888899899999999889999999999
Q ss_pred cccCcccc
Q 044933 317 FIRYCERL 324 (570)
Q Consensus 317 ~Ls~~~~l 324 (570)
++..+...
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88887643
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.17 E-value=0.72 Score=42.39 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=45.4
Q ss_pred CCccEEEccCCccccc-CccccCCCCcCEEcccCccccCcCCCCCcccceecccccccCCcCCCCCCCCCccccceeecc
Q 044933 288 SSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLS 366 (570)
Q Consensus 288 ~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 366 (570)
..++.++-+++.|... -+.+.+++.++.|.+.+|+.+... -++.+.. ..++|+.|+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~----------------~L~~l~~-----~~~~L~~L~ls 159 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW----------------CLERLGG-----LAPSLQDLDLS 159 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH----------------HHHHhcc-----cccchheeecc
Confidence 3456666666666532 234566777777777777644321 1122222 12456666666
Q ss_pred CCcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 044933 367 DNFKLDRNEIRGIVKGALQKIQLLATARLRE 397 (570)
Q Consensus 367 ~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~ 397 (570)
+|..+++..+. .+.++++|+.+.+..
T Consensus 160 gC~rIT~~GL~-----~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 160 GCPRITDGGLA-----CLLKLKNLRRLHLYD 185 (221)
T ss_pred CCCeechhHHH-----HHHHhhhhHHHHhcC
Confidence 66666665554 344555555555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.68 E-value=0.11 Score=48.69 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=35.4
Q ss_pred CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
...+.||++.+.+-.+-..| -+..|+.|+++.|.+..+|+..+.+..++.+++..|+ .+..| .++ +..++++++++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p-~s~-~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQP-KSQ-KKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCC-ccc-cccCCcchhhh
Confidence 44445555555444444444 3444455555555555555544444444444444333 33332 123 34444444444
Q ss_pred cCC
Q 044933 109 SGC 111 (570)
Q Consensus 109 ~~~ 111 (570)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.76 E-value=1.8 Score=25.54 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=12.9
Q ss_pred CCcEEEECCCCChhhccc
Q 044933 52 EKLVLLEMPHSNIEQLFD 69 (570)
Q Consensus 52 ~~L~~L~L~~n~l~~l~~ 69 (570)
.+|++|+.++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467777777777777765
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.03 E-value=3.6 Score=24.36 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=10.8
Q ss_pred CCccEEEccCCccccc
Q 044933 288 SSVTTLHLEGNNFERI 303 (570)
Q Consensus 288 ~~L~~L~L~~n~l~~l 303 (570)
.+|+.|+|+.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777776654
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.69 E-value=4 Score=23.91 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.1
Q ss_pred cccceeeccCCcccchhhhhh
Q 044933 358 SYLRTLYLSDNFKLDRNEIRG 378 (570)
Q Consensus 358 ~~L~~L~l~~~~~L~~~~i~~ 378 (570)
++|+.|++++|.++++..+..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 468888888888888776653
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=65.93 E-value=3.8 Score=23.39 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=7.8
Q ss_pred CCccEEEccCCccc
Q 044933 288 SSVTTLHLEGNNFE 301 (570)
Q Consensus 288 ~~L~~L~L~~n~l~ 301 (570)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56666777766655
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.34 E-value=5.3 Score=42.38 Aligned_cols=17 Identities=12% Similarity=0.513 Sum_probs=9.2
Q ss_pred CCCCCceeeEEEEEEEe
Q 044933 439 FFNNKSVLGLAFSVIVN 455 (570)
Q Consensus 439 ~~~~~~~~g~~~~~v~~ 455 (570)
|+.....+||.+.-||-
T Consensus 440 ~~~~~~~l~ftv~G~f~ 456 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFR 456 (585)
T ss_pred eecccceEEEEEEEEee
Confidence 44445556666665543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=55.81 E-value=34 Score=35.89 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=28.1
Q ss_pred CCCCEEeeeCCCCCCCCCCCCC-----CCccEEEecCcCCC--cCCh--hccCCCCCCEEeccCCC
Q 044933 124 KLLKELDLSGCSKLKRLPEISP-----GNITTMHLDGTALE--ELPS--SIECLSKLSHLGLADCK 180 (570)
Q Consensus 124 ~~L~~L~Ls~~~~~~~~p~~~~-----~~L~~L~L~~~~i~--~lp~--~~~~l~~L~~L~L~~~~ 180 (570)
..+.+++|+.|..-+.+|.... ..++.++.+.+.+. .+-. ..+.-++|...+++.|.
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 3455666666655555554322 34555555555444 1111 13344566666665544
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.02 E-value=13 Score=22.26 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=9.8
Q ss_pred CCccEEEccCCccc
Q 044933 288 SSVTTLHLEGNNFE 301 (570)
Q Consensus 288 ~~L~~L~L~~n~l~ 301 (570)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777765
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.54 E-value=12 Score=39.83 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=43.7
Q ss_pred ccCCCCcEEEecCCCCCCc--CCCcc-CCCCCCEEeeeCCCC-CC---CCCCCCCCCccEEEecCcCCCc---CCh----
Q 044933 98 QHLNNLVILNLSGCKNLQS--LPARI-HLKLLKELDLSGCSK-LK---RLPEISPGNITTMHLDGTALEE---LPS---- 163 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~--~p~~~-~l~~L~~L~Ls~~~~-~~---~~p~~~~~~L~~L~L~~~~i~~---lp~---- 163 (570)
.+.+.+..++|++|++... +.... ..|+|..|+|++|.. +. .++...+..|++|.+.||.+.+ .+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3456666666776663321 12212 566777777777621 11 2333334678888888887763 111
Q ss_pred -hccCCCCCCEEe
Q 044933 164 -SIECLSKLSHLG 175 (570)
Q Consensus 164 -~~~~l~~L~~L~ 175 (570)
.-..+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 123578888776
Done!