Query 044933
Match_columns 570
No_of_seqs 610 out of 4670
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.5E-41 1.9E-45 378.9 16.1 391 30-438 247-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 1E-39 3.5E-44 368.6 14.1 389 2-407 247-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 3.1E-37 1.1E-41 339.5 25.4 411 2-436 57-564 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.3E-36 4.6E-41 334.5 20.1 383 3-401 34-489 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-36 1.9E-40 329.5 20.0 377 2-401 32-534 (606)
6 4eco_A Uncharacterized protein 100.0 1.2E-35 4.2E-40 327.9 22.3 337 23-368 198-597 (636)
7 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-36 2.3E-40 325.0 15.3 406 2-436 26-514 (549)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-35 1.7E-39 322.0 22.2 381 1-401 55-558 (606)
9 4eco_A Uncharacterized protein 100.0 1.5E-34 5.3E-39 319.1 25.4 333 1-345 205-600 (636)
10 4ecn_A Leucine-rich repeat pro 100.0 5.5E-35 1.9E-39 329.1 21.4 335 23-368 440-837 (876)
11 2z63_A TOLL-like receptor 4, v 100.0 3.3E-35 1.1E-39 320.9 16.6 382 3-401 29-507 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-34 4.1E-39 330.4 21.6 384 2-402 24-518 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 3.6E-34 1.2E-38 326.5 23.7 297 20-322 16-373 (844)
14 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-34 1.7E-38 318.2 21.2 385 2-401 25-517 (680)
15 2z63_A TOLL-like receptor 4, v 100.0 1.8E-34 6.2E-39 315.0 16.9 382 1-405 51-535 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-34 4.8E-39 312.4 14.7 368 5-401 3-457 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 5.5E-33 1.9E-37 312.9 28.0 338 1-346 447-841 (876)
18 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-32 8.4E-37 304.6 29.9 80 1-86 72-156 (680)
19 3v47_A TOLL-like receptor 5B a 100.0 3.7E-33 1.3E-37 296.1 16.1 329 34-368 14-405 (455)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-33 1.8E-37 303.1 17.5 155 237-401 350-510 (562)
21 1jl5_A Outer protein YOPM; leu 100.0 4.5E-32 1.5E-36 287.0 23.2 333 21-401 48-409 (454)
22 3v47_A TOLL-like receptor 5B a 100.0 6.4E-32 2.2E-36 286.6 23.4 337 2-347 30-410 (455)
23 1o6v_A Internalin A; bacterial 100.0 8.9E-32 3.1E-36 286.4 22.9 341 30-401 46-388 (466)
24 2z81_A CD282 antigen, TOLL-lik 100.0 6.7E-32 2.3E-36 293.4 21.8 384 1-405 49-514 (549)
25 2id5_A Lingo-1, leucine rich r 100.0 5.3E-31 1.8E-35 281.4 28.0 301 20-324 23-333 (477)
26 4fmz_A Internalin; leucine ric 100.0 6.1E-31 2.1E-35 268.9 25.7 298 30-343 44-344 (347)
27 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-31 1.2E-35 285.8 24.3 327 2-344 21-480 (520)
28 1o6v_A Internalin A; bacterial 100.0 1E-30 3.6E-35 278.2 27.1 336 2-368 46-385 (466)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.4E-31 2.5E-35 286.0 25.6 327 2-344 52-509 (562)
30 4fmz_A Internalin; leucine ric 100.0 2.1E-30 7.2E-35 264.9 27.4 300 1-322 43-344 (347)
31 3o6n_A APL1; leucine-rich repe 100.0 4E-30 1.4E-34 267.2 24.5 298 30-368 45-349 (390)
32 1jl5_A Outer protein YOPM; leu 100.0 2.2E-31 7.5E-36 281.7 15.0 344 2-402 11-371 (454)
33 2id5_A Lingo-1, leucine rich r 100.0 1.4E-29 4.7E-34 270.4 27.0 289 30-322 11-307 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-29 1.6E-33 264.1 28.7 291 1-322 41-350 (457)
35 3oja_B Anopheles plasmodium-re 100.0 1.5E-29 5E-34 277.6 24.4 279 30-322 51-335 (597)
36 3o6n_A APL1; leucine-rich repe 100.0 1.9E-29 6.5E-34 262.1 23.3 301 1-323 44-351 (390)
37 3bz5_A Internalin-J, INLJ; leu 100.0 3.7E-29 1.3E-33 264.9 25.6 336 30-440 42-395 (457)
38 4g8a_A TOLL-like receptor 4; l 100.0 1E-29 3.4E-34 280.7 19.2 126 3-136 53-185 (635)
39 3oja_B Anopheles plasmodium-re 100.0 1.1E-28 3.8E-33 270.5 23.1 301 1-323 50-357 (597)
40 2ft3_A Biglycan; proteoglycan, 100.0 4.4E-28 1.5E-32 246.2 22.6 260 31-322 34-305 (332)
41 1xku_A Decorin; proteoglycan, 100.0 1.8E-27 6.3E-32 241.4 25.8 263 30-323 31-305 (330)
42 1xku_A Decorin; proteoglycan, 100.0 1.6E-27 5.5E-32 241.8 24.0 240 53-323 32-275 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-27 5.9E-32 241.8 23.8 280 3-322 34-331 (332)
44 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-26 4.8E-31 255.4 28.9 360 1-370 75-579 (635)
45 1ogq_A PGIP-2, polygalacturona 100.0 4.5E-28 1.5E-32 244.0 14.5 248 52-326 50-306 (313)
46 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-27 1.2E-31 237.4 15.8 243 101-345 50-304 (313)
47 2z80_A TOLL-like receptor 2, v 99.9 1.3E-26 4.3E-31 237.5 15.7 271 30-326 31-316 (353)
48 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-25 2E-29 239.9 27.6 263 30-329 40-302 (622)
49 4fcg_A Uncharacterized protein 99.9 1.6E-25 5.6E-30 226.7 20.5 217 100-320 80-310 (328)
50 4fcg_A Uncharacterized protein 99.9 1.6E-25 5.6E-30 226.7 19.3 222 30-278 81-314 (328)
51 2z66_A Variable lymphocyte rec 99.9 5.9E-26 2E-30 227.7 12.2 242 33-301 10-261 (306)
52 3zyj_A Leucine-rich repeat-con 99.9 1.6E-24 5.5E-29 228.7 22.7 240 55-322 46-290 (440)
53 3zyi_A Leucine-rich repeat-con 99.9 2.5E-24 8.4E-29 228.1 23.2 241 54-322 56-301 (452)
54 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-23 4.2E-28 229.4 28.3 264 3-308 41-305 (622)
55 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-26 1.1E-30 231.0 6.0 263 52-325 10-276 (317)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-24 4.4E-29 215.6 17.4 137 164-301 100-238 (285)
57 1z7x_W Ribonuclease inhibitor; 99.9 4.3E-28 1.5E-32 257.4 -9.1 335 2-343 3-409 (461)
58 3zyj_A Leucine-rich repeat-con 99.9 7.7E-24 2.6E-28 223.4 22.6 244 30-301 43-292 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 6.8E-24 2.3E-28 224.7 22.2 244 30-301 54-303 (452)
60 2z80_A TOLL-like receptor 2, v 99.9 1.4E-24 4.8E-29 222.3 16.2 257 21-302 44-315 (353)
61 1wwl_A Monocyte differentiatio 99.9 1.1E-25 3.7E-30 226.5 7.4 243 52-323 43-308 (312)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-24 4.9E-29 215.3 15.4 217 32-251 13-236 (285)
63 2z66_A Variable lymphocyte rec 99.9 6E-24 2E-28 213.1 18.5 242 55-323 10-260 (306)
64 1z7x_W Ribonuclease inhibitor; 99.9 4.2E-28 1.4E-32 257.6 -12.9 336 30-368 3-408 (461)
65 3oja_A Leucine-rich immune mol 99.9 3.3E-24 1.1E-28 228.8 9.2 237 73-320 32-271 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-24 1.1E-28 216.2 5.0 258 76-345 11-275 (317)
67 1wwl_A Monocyte differentiatio 99.9 3E-24 1E-28 215.9 4.6 242 30-302 43-310 (312)
68 3oja_A Leucine-rich immune mol 99.9 1.1E-22 3.6E-27 217.1 10.6 217 98-324 31-250 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 1.5E-21 5E-26 192.6 17.8 221 34-301 11-237 (276)
70 2z62_A TOLL-like receptor 4, v 99.9 2.5E-21 8.6E-26 190.9 19.4 160 165-325 72-238 (276)
71 3ogk_B Coronatine-insensitive 99.9 4.2E-25 1.4E-29 242.0 -10.0 228 165-401 266-526 (592)
72 2o6q_A Variable lymphocyte rec 99.9 1.5E-20 5.2E-25 184.7 21.9 196 125-322 17-216 (270)
73 2xwt_C Thyrotropin receptor; s 99.9 2.9E-21 1E-25 186.2 15.9 203 137-342 23-236 (239)
74 3ogk_B Coronatine-insensitive 99.9 4.2E-24 1.4E-28 234.0 -6.0 266 99-369 218-524 (592)
75 1p9a_G Platelet glycoprotein I 99.9 1.6E-20 5.5E-25 186.5 20.1 129 50-205 8-136 (290)
76 2o6q_A Variable lymphocyte rec 99.9 4.7E-20 1.6E-24 181.2 21.7 197 30-251 16-216 (270)
77 1p9a_G Platelet glycoprotein I 99.8 3E-20 1E-24 184.5 20.4 195 123-322 9-206 (290)
78 2xwt_C Thyrotropin receptor; s 99.8 6.7E-21 2.3E-25 183.7 12.8 129 165-322 101-237 (239)
79 4glp_A Monocyte differentiatio 99.8 1.6E-20 5.4E-25 188.5 15.5 219 101-323 64-306 (310)
80 4ay9_X Follicle-stimulating ho 99.8 1.5E-20 5.3E-25 191.9 15.2 239 33-321 12-256 (350)
81 3rfs_A Internalin B, repeat mo 99.8 6.1E-20 2.1E-24 180.6 17.2 208 98-336 38-247 (272)
82 3rfs_A Internalin B, repeat mo 99.8 1.2E-19 4.1E-24 178.6 18.6 199 30-239 41-245 (272)
83 4ay9_X Follicle-stimulating ho 99.8 2.1E-19 7.4E-24 183.4 18.9 237 127-368 12-256 (350)
84 1h6u_A Internalin H; cell adhe 99.8 1.9E-19 6.4E-24 180.4 17.9 148 165-322 81-228 (308)
85 1h6u_A Internalin H; cell adhe 99.8 1.6E-19 5.3E-24 181.0 17.3 197 98-306 38-235 (308)
86 2p1m_B Transport inhibitor res 99.8 4.1E-23 1.4E-27 226.2 -10.1 151 1-156 65-245 (594)
87 3m19_A Variable lymphocyte rec 99.8 4E-19 1.4E-23 172.6 18.5 173 148-323 16-191 (251)
88 2p1m_B Transport inhibitor res 99.8 3.7E-23 1.3E-27 226.5 -11.6 150 30-179 66-245 (594)
89 2ca6_A RAN GTPase-activating p 99.8 1.3E-21 4.6E-26 202.6 0.5 246 54-323 11-315 (386)
90 2ast_B S-phase kinase-associat 99.8 1.3E-20 4.5E-25 191.1 4.4 241 76-343 48-304 (336)
91 2ca6_A RAN GTPase-activating p 99.8 9.9E-22 3.4E-26 203.6 -4.4 257 31-304 10-319 (386)
92 3goz_A Leucine-rich repeat-con 99.8 4.3E-21 1.5E-25 197.0 0.4 243 35-301 3-297 (362)
93 3m19_A Variable lymphocyte rec 99.8 1.9E-18 6.5E-23 167.8 19.0 177 125-303 15-194 (251)
94 2ast_B S-phase kinase-associat 99.8 8.3E-21 2.8E-25 192.6 1.6 253 51-332 46-314 (336)
95 4glp_A Monocyte differentiatio 99.8 3E-19 1E-23 179.2 10.8 195 169-368 91-304 (310)
96 3goz_A Leucine-rich repeat-con 99.8 1.6E-19 5.5E-24 185.3 6.5 245 56-324 2-297 (362)
97 3cvr_A Invasion plasmid antige 99.8 4.6E-18 1.6E-22 183.2 18.1 183 102-307 60-250 (571)
98 1h6t_A Internalin B; cell adhe 99.8 1.4E-17 4.7E-22 165.4 17.4 166 147-323 47-212 (291)
99 2o6s_A Variable lymphocyte rec 99.7 2.4E-17 8.3E-22 155.1 15.8 176 150-334 11-188 (208)
100 3cvr_A Invasion plasmid antige 99.7 1.6E-17 5.6E-22 178.9 16.5 183 76-284 60-250 (571)
101 1h6t_A Internalin B; cell adhe 99.7 5.4E-17 1.9E-21 161.1 15.8 175 98-305 43-217 (291)
102 2o6s_A Variable lymphocyte rec 99.7 8.9E-17 3.1E-21 151.2 15.5 177 128-312 11-190 (208)
103 1m9s_A Internalin B; cell inva 99.7 8.8E-17 3E-21 175.0 17.0 172 122-304 41-213 (605)
104 2v9t_B SLIT homolog 2 protein 99.7 2.1E-16 7E-21 150.1 15.0 150 149-301 14-165 (220)
105 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.7E-21 164.0 12.8 170 127-322 21-200 (361)
106 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.6E-21 147.2 13.3 148 147-300 45-193 (197)
107 3e6j_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 149.1 15.3 149 148-322 21-170 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 5E-16 1.7E-20 147.4 14.7 149 150-301 15-166 (220)
109 1xeu_A Internalin C; cellular 99.7 9.8E-17 3.3E-21 156.8 9.6 165 147-323 20-184 (263)
110 1m9s_A Internalin B; cell inva 99.7 6.8E-16 2.3E-20 168.0 17.0 173 98-280 40-212 (605)
111 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.6E-21 147.6 11.0 151 165-322 40-192 (197)
112 1dce_A Protein (RAB geranylger 99.7 4.3E-19 1.5E-23 192.1 -9.1 213 50-318 347-567 (567)
113 2xot_A Amphoterin-induced prot 99.7 4.2E-16 1.5E-20 159.6 12.7 176 103-301 20-202 (361)
114 1xeu_A Internalin C; cellular 99.6 9.2E-17 3.1E-21 157.0 7.1 171 51-233 18-188 (263)
115 3e6j_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 143.4 16.5 150 126-301 21-172 (229)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 1.8E-15 6E-20 143.7 14.8 151 127-279 14-167 (220)
117 1dce_A Protein (RAB geranylger 99.6 1.5E-18 5.1E-23 187.8 -8.8 176 146-326 349-548 (567)
118 2v9t_B SLIT homolog 2 protein 99.6 3.2E-15 1.1E-19 141.9 15.0 151 127-279 14-166 (220)
119 2ell_A Acidic leucine-rich nuc 99.6 4.2E-15 1.4E-19 134.7 11.3 134 169-304 24-163 (168)
120 4b8c_D Glucose-repressible alc 99.6 4.3E-16 1.5E-20 173.7 5.0 153 184-342 215-369 (727)
121 2ell_A Acidic leucine-rich nuc 99.6 6.9E-15 2.3E-19 133.2 11.0 136 146-284 24-166 (168)
122 2je0_A Acidic leucine-rich nuc 99.5 8.4E-15 2.9E-19 129.8 8.3 125 194-320 18-149 (149)
123 4b8c_D Glucose-repressible alc 99.5 2.1E-15 7.2E-20 168.1 4.6 144 146-298 224-369 (727)
124 3sb4_A Hypothetical leucine ri 99.5 5.9E-14 2E-18 141.7 11.7 277 30-318 25-328 (329)
125 2je0_A Acidic leucine-rich nuc 99.5 4.1E-14 1.4E-18 125.3 8.4 125 147-296 18-148 (149)
126 2wfh_A SLIT homolog 2 protein 99.5 4.2E-13 1.4E-17 124.4 13.9 124 127-251 13-137 (193)
127 1w8a_A SLIT protein; signaling 99.5 2E-13 6.9E-18 126.5 11.6 127 149-301 11-139 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.5 9.5E-14 3.3E-18 126.7 8.2 103 218-322 43-151 (176)
129 1w8a_A SLIT protein; signaling 99.4 5.4E-13 1.9E-17 123.6 12.2 124 127-251 11-137 (192)
130 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.6E-17 121.0 12.6 126 149-301 13-139 (193)
131 2o6r_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 116.6 13.8 128 148-301 9-137 (177)
132 3sb4_A Hypothetical leucine ri 99.4 1.3E-12 4.5E-17 131.8 11.9 103 167-272 224-328 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.6E-17 119.7 8.7 91 212-302 59-154 (176)
134 1ds9_A Outer arm dynein; leuci 99.4 6.4E-15 2.2E-19 137.3 -6.5 145 168-317 17-180 (198)
135 4fdw_A Leucine rich hypothetic 99.3 4E-11 1.4E-15 123.9 20.1 253 52-321 113-380 (401)
136 4fdw_A Leucine rich hypothetic 99.3 4.2E-11 1.4E-15 123.8 20.1 236 53-302 136-384 (401)
137 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.3E-16 112.6 14.1 124 127-251 10-135 (177)
138 1ds9_A Outer arm dynein; leuci 99.3 2.1E-14 7.1E-19 133.9 -5.7 139 157-301 36-185 (198)
139 3g39_A Variable lymphocyte rec 99.2 6.7E-11 2.3E-15 107.1 11.0 102 148-251 11-113 (170)
140 2r9u_A Variable lymphocyte rec 99.2 7.4E-11 2.5E-15 107.2 11.0 101 149-251 15-116 (174)
141 2r9u_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 107.4 10.5 100 220-322 15-116 (174)
142 4fs7_A Uncharacterized protein 99.1 1E-09 3.4E-14 113.5 18.2 282 23-320 62-375 (394)
143 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 102.5 11.9 107 126-233 11-118 (170)
144 4fs7_A Uncharacterized protein 99.1 7.9E-09 2.7E-13 106.7 20.2 263 41-320 58-352 (394)
145 3un9_A NLR family member X1; l 99.0 3.3E-11 1.1E-15 123.4 -2.4 133 169-301 101-252 (372)
146 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.8E-14 111.0 8.7 103 150-253 12-116 (347)
147 4gt6_A Cell surface protein; l 98.9 3.9E-08 1.3E-12 101.5 19.7 278 31-322 65-368 (394)
148 3un9_A NLR family member X1; l 98.9 3.7E-11 1.3E-15 122.9 -3.6 155 168-322 71-250 (372)
149 2ifg_A High affinity nerve gro 98.9 3.2E-09 1.1E-13 107.6 9.6 103 197-301 12-116 (347)
150 4gt6_A Cell surface protein; l 98.8 1.7E-07 5.8E-12 96.7 18.8 276 52-342 64-367 (394)
151 2ra8_A Uncharacterized protein 98.7 1E-08 3.6E-13 104.0 4.4 132 188-322 167-318 (362)
152 4h09_A Hypothetical leucine ri 98.6 2E-06 6.8E-11 88.0 20.7 273 30-319 46-341 (379)
153 2ra8_A Uncharacterized protein 98.6 3.2E-08 1.1E-12 100.4 6.0 157 160-322 163-341 (362)
154 4h09_A Hypothetical leucine ri 98.5 6.6E-06 2.3E-10 84.1 21.8 267 30-310 69-355 (379)
155 1io0_A Tropomodulin; LRR prote 98.2 2.3E-07 7.9E-12 84.8 1.8 87 236-322 61-162 (185)
156 1io0_A Tropomodulin; LRR prote 98.1 5.3E-07 1.8E-11 82.4 1.8 89 213-301 61-164 (185)
157 3e4g_A ATP synthase subunit S, 98.1 8.2E-07 2.8E-11 79.5 2.8 95 44-139 52-154 (176)
158 3rw6_A Nuclear RNA export fact 97.9 2.7E-06 9.4E-11 81.9 2.0 79 238-317 168-257 (267)
159 3e4g_A ATP synthase subunit S, 97.7 2E-05 6.8E-10 70.5 3.9 14 285-298 136-149 (176)
160 3rw6_A Nuclear RNA export fact 97.6 5.8E-05 2E-09 72.6 5.2 79 167-246 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.001 3.5E-08 60.5 3.1 33 265-297 98-135 (197)
162 3rfe_A Platelet glycoprotein I 96.0 0.007 2.4E-07 51.2 5.2 51 34-85 12-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0027 9.3E-08 57.7 2.2 88 213-300 66-169 (197)
164 3rfe_A Platelet glycoprotein I 95.6 0.023 7.7E-07 48.0 6.7 52 128-180 12-66 (130)
165 2lz0_A Uncharacterized protein 44.1 18 0.00061 28.3 3.4 38 70-110 15-52 (100)
166 2lz0_A Uncharacterized protein 26.5 75 0.0026 24.6 4.4 45 157-202 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-41 Score=378.85 Aligned_cols=391 Identities=19% Similarity=0.214 Sum_probs=264.9
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChh-hccccccCc-cCCcEEccCcccCCCCCCCCcccccCCCCcEEE
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIE-QLFDSVQDY-GKLNQIITAAFNFFSKIPTPSLTQHLNNLVILN 107 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~-~l~~~~~~l-~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~ 107 (570)
++|++|++++|.+....+...+++|++|++++|+++ .+|..+... ++|++|++++|. +++..+..+ +.+++|++|+
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~ 324 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFF-GSCSLLESLA 324 (768)
T ss_dssp SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGG-GGCTTCCEEE
T ss_pred CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHH-hcCCCccEEE
Confidence 444444444444432222224455555555555555 455554443 666666666654 554444455 6666677777
Q ss_pred ecCCCCCCcCCCc-c-CCCCCCEEeeeCCCCCCCCCCCCC---CCccEEEecCcCCC-cCChhccC--CCCCCEEeccCC
Q 044933 108 LSGCKNLQSLPAR-I-HLKLLKELDLSGCSKLKRLPEISP---GNITTMHLDGTALE-ELPSSIEC--LSKLSHLGLADC 179 (570)
Q Consensus 108 L~~~~~~~~~p~~-~-~l~~L~~L~Ls~~~~~~~~p~~~~---~~L~~L~L~~~~i~-~lp~~~~~--l~~L~~L~L~~~ 179 (570)
|++|.+.+.+|.. + .+++|++|++++|.....+|.... .+|++|++++|.++ .+|..+.. +++|++|++++|
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 7666666566654 3 666677777776654445554332 26777777777766 35555554 677888888888
Q ss_pred CCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cCCchhccCCCCcEEEeccCCCCCCccc
Q 044933 180 KSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNKGLSLPIT 258 (570)
Q Consensus 180 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~l~~n~~~~~~~~ 258 (570)
.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|. +.+..|
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p 483 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIP 483 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCC
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-ccCcCC
Confidence 877788888888888888888888887788888888888888888888887 677788888888888888888 555667
Q ss_pred cccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCccc-ccCccccCCCCcCEEcccCccccCcCCCCC-----
Q 044933 259 FSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNNFE-RIPESIIQLSNLERLFIRYCERLQSLPKLP----- 331 (570)
Q Consensus 259 ~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~~----- 331 (570)
..+..+++|+.|++++|++++ +|.+++.+++|++|+|++|.++ .+|..+..+++|+.|++++|+..+.+|...
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 778888888888888888885 7888888888888888888887 778888888888888888887766665321
Q ss_pred --------------------------------------------------------------------cccceecccccc
Q 044933 332 --------------------------------------------------------------------CNLLSLDAHHCT 343 (570)
Q Consensus 332 --------------------------------------------------------------------~~L~~L~l~~c~ 343 (570)
++|+.|++++|.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 234555555554
Q ss_pred cCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCeeEeecCCCCCccee
Q 044933 344 ALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREKISYPSLRGRGFLPWNKIPKWFS 423 (570)
Q Consensus 344 ~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~pg~~ip~~f~ 423 (570)
....+|..+ +.++.|+.|++++| .+++.+|..+.+++.|+.||+++|+++|.+|.... .++..-.
T Consensus 644 l~g~ip~~l--~~l~~L~~L~Ls~N------~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~-------~l~~L~~ 708 (768)
T 3rgz_A 644 LSGYIPKEI--GSMPYLFILNLGHN------DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-------ALTMLTE 708 (768)
T ss_dssp CBSCCCGGG--GGCTTCCEEECCSS------CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG-------GCCCCSE
T ss_pred ccccCCHHH--hccccCCEEeCcCC------ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh-------CCCCCCE
Confidence 433444332 23455555555544 67777777777777777788777777765554322 4555556
Q ss_pred ecCCCcEEEEEcCCC
Q 044933 424 FQSAGSCVTLEMPPD 438 (570)
Q Consensus 424 ~~~~~~~i~~~lp~~ 438 (570)
..-.+|.++..+|..
T Consensus 709 L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCSSEEEEECCSS
T ss_pred EECcCCcccccCCCc
Confidence 666788888888864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-39 Score=368.56 Aligned_cols=389 Identities=22% Similarity=0.248 Sum_probs=333.6
Q ss_pred CCceEEEEecCCcccccccccccCCCCCCCccEEEecCCCCC-CCCCCc-C-CCCcEEEECCCCChh-hccccccCccCC
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGFTEVRYLHWHGYPLK-LLPSNI-H-PEKLVLLEMPHSNIE-QLFDSVQDYGKL 77 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~~~L~~L~l~~~~l~-~lp~~~-~-~~~L~~L~L~~n~l~-~l~~~~~~l~~L 77 (570)
++|+.|++++|. ....+|.. ..++|++|++++|.+. .+|..+ . +++|++|+|++|+++ .+|..++.+++|
T Consensus 247 ~~L~~L~Ls~n~-----l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 247 TELKLLNISSNQ-----FVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp SSCCEEECCSSC-----CEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred CCCCEEECCCCc-----ccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 456666665432 22233433 2289999999999998 888876 4 499999999999998 568899999999
Q ss_pred cEEccCcccCCC-CCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCC-CCCEEeeeCCCCCCCCCCCC----CCCccE
Q 044933 78 NQIITAAFNFFS-KIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLK-LLKELDLSGCSKLKRLPEIS----PGNITT 150 (570)
Q Consensus 78 ~~L~Ls~~~~l~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~-~L~~L~Ls~~~~~~~~p~~~----~~~L~~ 150 (570)
++|++++|. ++ .++...+ ..+++|++|++++|.+.+.+|..+ .++ +|++|++++|.....+|... .++|++
T Consensus 321 ~~L~L~~n~-l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 321 ESLALSSNN-FSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp CEEECCSSE-EEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred cEEECCCCc-ccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 999999987 55 5554446 899999999999999888899888 676 99999999997665555433 358999
Q ss_pred EEecCcCCC-cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccC
Q 044933 151 MHLDGTALE-ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSI 229 (570)
Q Consensus 151 L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i 229 (570)
|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..++.+++|+.|++++|.+
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 999999998 7888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCccc-ccCcc
Q 044933 230 T-EVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNNFE-RIPES 306 (570)
Q Consensus 230 ~-~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~ 306 (570)
. .+|..+..+++|+.|++++|+ +.+..|..++.+++|++|++++|.+++ +|..++.+++|+.|+|++|.++ .+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 9 788899999999999999999 677788889999999999999999996 8999999999999999999987 56543
Q ss_pred ----------------------------------------------------------------------ccCCCCcCEE
Q 044933 307 ----------------------------------------------------------------------IIQLSNLERL 316 (570)
Q Consensus 307 ----------------------------------------------------------------------l~~l~~L~~L 316 (570)
+..+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3345789999
Q ss_pred cccCccccCcCCCC---CcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHH
Q 044933 317 FIRYCERLQSLPKL---PCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATA 393 (570)
Q Consensus 317 ~Ls~~~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l 393 (570)
+|++|+..+.+|.. .+.|+.|++++|.....+|..+ +.+++|+.|++++| .+++.+|..+.+++.|+.+
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l--~~L~~L~~LdLs~N------~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV--GDLRGLNILDLSSN------KLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSS------CCEECCCGGGGGCCCCSEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH--hCCCCCCEEECCCC------cccCcCChHHhCCCCCCEE
Confidence 99999988888864 4689999999987766777655 35788999999877 8899999999999999999
Q ss_pred HHHHhhhcCCCCCC
Q 044933 394 RLREAREKISYPSL 407 (570)
Q Consensus 394 ~l~~n~~~~~~~~~ 407 (570)
++++|+++|.+|..
T Consensus 710 ~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSEEEEECCSS
T ss_pred ECcCCcccccCCCc
Confidence 99999998766653
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-37 Score=339.53 Aligned_cols=411 Identities=18% Similarity=0.143 Sum_probs=219.6
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCC-CCc-CCCCcEEEECCCCChhhc-cccccCccCC
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLP-SNI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKL 77 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L 77 (570)
++||.|++++|. .....|..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|+++.+ +..+..+++|
T Consensus 57 ~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 57 INLTFLDLTRCQ-----IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred ccceEEECCCCc-----cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 455555554332 22233444555 55666666655555442 233 555566666666655554 3445556666
Q ss_pred cEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCC--EEeeeCCCCCCCCCCC-----------
Q 044933 78 NQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLK--ELDLSGCSKLKRLPEI----------- 143 (570)
Q Consensus 78 ~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~--~L~Ls~~~~~~~~p~~----------- 143 (570)
++|++++|. +++++.+.+ ..+++|++|++++|.+.+..|..+ .+++|+ .|++++|......|..
T Consensus 132 ~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 132 ESLYLGSNH-ISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CEEECCSSC-CCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cEEECCCCc-ccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 666666544 555444444 335566666666555444333333 455555 4555544322211111
Q ss_pred ----------------------------------------------------------------CC--CCccEEEecCcC
Q 044933 144 ----------------------------------------------------------------SP--GNITTMHLDGTA 157 (570)
Q Consensus 144 ----------------------------------------------------------------~~--~~L~~L~L~~~~ 157 (570)
+. ++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 00 345555555555
Q ss_pred CCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcch-hhcCCCcCceeccccccCccC---C
Q 044933 158 LEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPE-ELGNLEALDILHAIGTSITEV---P 233 (570)
Q Consensus 158 i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~l~~n~i~~l---~ 233 (570)
++++|..+..+++|++|++++|.+.+..|..+.++++|++|++++|...+.+|. .++.+++|++|++++|.+..+ +
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 555555555555555555555555544455555555555555555555444433 355556666666666665533 3
Q ss_pred chhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-C-cccCCCCCccEEEccCCccccc-CccccCC
Q 044933 234 PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-P-ESLGLLSSVTTLHLEGNNFERI-PESIIQL 310 (570)
Q Consensus 234 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l 310 (570)
..+..+++|+.|++++|. +....+..+..+++|+.|++++|.+++. + ..+..+++|+.|++++|.++.+ |..+..+
T Consensus 370 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred hhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 455566666666666665 3333444556666666666666666653 2 3366666677777776666643 4556666
Q ss_pred CCcCEEcccCccccCc-CC-----CCCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHH
Q 044933 311 SNLERLFIRYCERLQS-LP-----KLPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGAL 384 (570)
Q Consensus 311 ~~L~~L~Ls~~~~l~~-lp-----~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l 384 (570)
++|++|++++|+..+. ++ ..+++|+.|++++|......+..+ ..+++|+.|++++| .+.+..+.++
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N------~l~~~~~~~l 520 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF--TSLKMMNHVDLSHN------RLTSSSIEAL 520 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSS------CCCGGGGGGG
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh--ccccCCCEEECCCC------ccCcCChhHh
Confidence 7777777777654331 11 124567777777764433334433 24567777777765 5666666666
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeeEeecCCCCCcceeecCCCcEEEEEcC
Q 044933 385 QKIQLLATARLREAREKISYPSLRGRGFLPWNKIPKWFSFQSAGSCVTLEMP 436 (570)
Q Consensus 385 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~pg~~ip~~f~~~~~~~~i~~~lp 436 (570)
.+++.| .+++++|++++..|... ..+|..-.....+|.++.+-+
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~-------~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLL-------PILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGH-------HHHHTSSEEECTTCCEECSGG
T ss_pred Cccccc-EEECcCCcccccCHhhc-------ccCCCCCEEeCCCCCccccCC
Confidence 667666 67777776653221110 022333444556666665444
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-36 Score=334.50 Aligned_cols=383 Identities=17% Similarity=0.113 Sum_probs=202.0
Q ss_pred CceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCC-CCCc-CCCCcEEEECCCCChhhc-cccccCccCCc
Q 044933 3 NLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLL-PSNI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKLN 78 (570)
Q Consensus 3 ~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~ 78 (570)
+++.|++++|. .....|..+.. ++|++|++++|.+..+ |..| .+++|++|+|++|+++.+ |..++.+++|+
T Consensus 34 ~l~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 34 STECLEFSFNV-----LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TCCEEECTTCC-----CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred cCcEEEccCCc-----cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 45555554432 12223444444 5666666666655544 2333 555666666666655544 34555566666
Q ss_pred EEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCC-cCCCccCCCCCCEEeeeCCCCCCCCCCCC--CCCcc--EEEe
Q 044933 79 QIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQ-SLPARIHLKLLKELDLSGCSKLKRLPEIS--PGNIT--TMHL 153 (570)
Q Consensus 79 ~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~--~~~L~--~L~L 153 (570)
+|++++|. +++++...+ ..+++|++|++++|.+.+ ..|....+++|++|++++|......|..+ ..+|+ .|++
T Consensus 109 ~L~L~~n~-i~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 109 HLFFIQTG-ISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp EEECTTSC-CSCGGGSCC-TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred EeeccccC-cccCCcchh-ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 66666544 555444444 555666666666655444 22433355666666666554332222111 13344 4555
Q ss_pred cCcCCCcCChhccCCC----------------------------------------------------CCCEEeccCCCC
Q 044933 154 DGTALEELPSSIECLS----------------------------------------------------KLSHLGLADCKS 181 (570)
Q Consensus 154 ~~~~i~~lp~~~~~l~----------------------------------------------------~L~~L~L~~~~~ 181 (570)
++|.++.++....... +|+.|++++|.+
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 5555544332211111 333444444444
Q ss_pred CCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccc
Q 044933 182 LKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFS 260 (570)
Q Consensus 182 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 260 (570)
.+..+..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+..+ |..+..+++|+.|++++|.......+..
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 4444444555666666666665433 5555566666666666666666644 3355566666666666665332233334
Q ss_pred cccCCCCCeeecccCCCCCc---CcccCCCCCccEEEccCCccccc-CccccCCCCcCEEcccCccccCcCCC----CCc
Q 044933 261 VDGLQNLRDLNLNDCGIMEL---PESLGLLSSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCERLQSLPK----LPC 332 (570)
Q Consensus 261 ~~~l~~L~~L~Ls~n~l~~i---p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~~l~~lp~----~~~ 332 (570)
+..+++|++|++++|.++++ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|+.....+. ..+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 56666666666666666653 45566666777777777766644 45566666777777776654443332 235
Q ss_pred ccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhh---hhHHHHHHHHHHHHHHHHhhhc
Q 044933 333 NLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGI---VKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 333 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~---~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
+|+.|++++|......+..+ ..+++|++|++++| .+.+. .+..+..+++|+.+++++|.++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n------~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGN------HFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTC------BCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred cCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCC------CCCccccccchhhccCCCccEEECCCCccC
Confidence 66777776655433333332 23566777777655 33321 1134555666666666666554
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-36 Score=329.51 Aligned_cols=377 Identities=17% Similarity=0.165 Sum_probs=227.9
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhc-cccccCccCC
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKL 77 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L 77 (570)
++||.|++++|. .....+..+.. ++|++|++++|.++.+++ .| .+++|++|+|++|.++.+ |..++.+++|
T Consensus 32 ~~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNP-----LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCCC-----cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 457777776543 22233345555 777777777777776644 34 677777777777777766 5667777777
Q ss_pred cEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCC-cCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC----------
Q 044933 78 NQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQ-SLPARI-HLKLLKELDLSGCSKLKRLPEISP---------- 145 (570)
Q Consensus 78 ~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~---------- 145 (570)
++|++++|. +++++...+ +.+++|++|++++|.+.+ .+|..+ ++++|++|++++|......+..+.
T Consensus 107 ~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 107 ENLVAVETK-LASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CEEECTTSC-CCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred CEEEccCCc-ccccccccc-CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 777777765 666665566 777777777777777655 456666 677777777777653322221110
Q ss_pred -------------------CCccEEEecCcC-------------------------------------------------
Q 044933 146 -------------------GNITTMHLDGTA------------------------------------------------- 157 (570)
Q Consensus 146 -------------------~~L~~L~L~~~~------------------------------------------------- 157 (570)
.+|++|++++|.
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 234444444443
Q ss_pred --------------------------------CCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCC
Q 044933 158 --------------------------------LEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSN 205 (570)
Q Consensus 158 --------------------------------i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 205 (570)
++.+| .+..+++|+.|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred heeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 33333 344444555555555554 4444 23 555555555555543
Q ss_pred CCCcchhhcCCCcCceeccccccCccC---CchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-C
Q 044933 206 LQRLPEELGNLEALDILHAIGTSITEV---PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-P 281 (570)
Q Consensus 206 ~~~~p~~l~~l~~L~~L~l~~n~i~~l---~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p 281 (570)
.+.. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+.++ |
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccC
Confidence 3322 344566666666666666543 5566666777777777666322 234566667777777777776664 2
Q ss_pred -cccCCCCCccEEEccCCcccc-cCccccCCCCcCEEcccCccccCc-CCCC---CcccceecccccccCCcCCCCCCCC
Q 044933 282 -ESLGLLSSVTTLHLEGNNFER-IPESIIQLSNLERLFIRYCERLQS-LPKL---PCNLLSLDAHHCTALESLPGLFPSS 355 (570)
Q Consensus 282 -~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~Ls~~~~l~~-lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~ 355 (570)
..+..+++|+.|++++|.++. .|..+..+++|++|++++|+..+. +|.. .++|+.|++++|......+..+ .
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~ 494 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF--D 494 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--T
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh--c
Confidence 466667777777777777663 455666777777777777665442 3432 3567777777764433333333 2
Q ss_pred CccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 044933 356 DESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 356 ~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
.+++|+.|++++| .+.++.|..+.++++|+.+++++|+++
T Consensus 495 ~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 495 TLHRLQLLNMSHN------NLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TCTTCCEEECCSS------CCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ccccCCEEECCCC------cCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 4566777776655 566666667777777777777777655
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-35 Score=327.93 Aligned_cols=337 Identities=15% Similarity=0.125 Sum_probs=287.9
Q ss_pred ccCCCCC-CCccEEEecCCCCCC------------------CCCCcC---CCCcEEEECCCCChh-hccccccCccCCcE
Q 044933 23 YFQGPGF-TEVRYLHWHGYPLKL------------------LPSNIH---PEKLVLLEMPHSNIE-QLFDSVQDYGKLNQ 79 (570)
Q Consensus 23 lp~~~~~-~~L~~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~ 79 (570)
+|..+.. ++|++|++++|.++. +|..+. +++|++|+|++|++. .+|+.++.+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 7777777 999999999999998 998864 999999999999977 67999999999999
Q ss_pred EccCcccCCCC-CCCCcccccC------CCCcEEEecCCCCCCcCCC--cc-CCCCCCEEeeeCCCCCCCCCCCCC-CCc
Q 044933 80 IITAAFNFFSK-IPTPSLTQHL------NNLVILNLSGCKNLQSLPA--RI-HLKLLKELDLSGCSKLKRLPEISP-GNI 148 (570)
Q Consensus 80 L~Ls~~~~l~~-~~~~~~~~~l------~~L~~L~L~~~~~~~~~p~--~~-~l~~L~~L~Ls~~~~~~~~p~~~~-~~L 148 (570)
|++++|..+++ ..+..+ +.+ ++|++|++++|.+. .+|. .+ .+++|++|++++|...+.+|.+.. ++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred EECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence 99999875665 222344 444 99999999999977 8888 66 899999999999886658883322 799
Q ss_pred cEEEecCcCCCcCChhccCCCC-CCEEeccCCCCCCcCCcccCCCC--CCCEEEEcCCCCCCCcchhhc-------CCCc
Q 044933 149 TTMHLDGTALEELPSSIECLSK-LSHLGLADCKSLKSLPSGLCKLK--SLDVLIIDGCSNLQRLPEELG-------NLEA 218 (570)
Q Consensus 149 ~~L~L~~~~i~~lp~~~~~l~~-L~~L~L~~~~~~~~lp~~l~~l~--~L~~L~L~~~~~~~~~p~~l~-------~l~~ 218 (570)
++|++++|.++.+|..+..+++ |++|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+. .+++
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 9999999999999999999999 999999999977 8888887755 899999999999999998888 8889
Q ss_pred CceeccccccCccCCchhc-cCCCCcEEEeccCCCCCCccccccccC-------CCCCeeecccCCCCCcCcccC--CCC
Q 044933 219 LDILHAIGTSITEVPPSIV-RLKRVRGIYFGRNKGLSLPITFSVDGL-------QNLRDLNLNDCGIMELPESLG--LLS 288 (570)
Q Consensus 219 L~~L~l~~n~i~~l~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l-------~~L~~L~Ls~n~l~~ip~~l~--~l~ 288 (570)
|+.|++++|.++.+|..+. .+++|+.|++++|.+. ......+... ++|+.|+|++|.++.+|..+. .++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 9999999999999998654 5999999999999955 2222223333 399999999999999999887 999
Q ss_pred CccEEEccCCcccccCccccCCCCcCEEcccC------ccccCcCCCC---CcccceecccccccCCcCCCCCCCCCccc
Q 044933 289 SVTTLHLEGNNFERIPESIIQLSNLERLFIRY------CERLQSLPKL---PCNLLSLDAHHCTALESLPGLFPSSDESY 359 (570)
Q Consensus 289 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~------~~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 359 (570)
+|+.|+|++|.++.+|..+..+++|+.|+|++ |+..+.+|.. .++|+.|++++|.. +.+|..+. ++
T Consensus 514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~----~~ 588 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT----PN 588 (636)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC----TT
T ss_pred CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh----Cc
Confidence 99999999999999999999999999999954 5566777754 47899999999766 77776543 68
Q ss_pred cceeeccCC
Q 044933 360 LRTLYLSDN 368 (570)
Q Consensus 360 L~~L~l~~~ 368 (570)
|+.|++++|
T Consensus 589 L~~L~Ls~N 597 (636)
T 4eco_A 589 ISVLDIKDN 597 (636)
T ss_dssp CCEEECCSC
T ss_pred CCEEECcCC
Confidence 999999988
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.6e-36 Score=325.00 Aligned_cols=406 Identities=16% Similarity=0.176 Sum_probs=275.1
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhcccc-ccCccCC
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQLFDS-VQDYGKL 77 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l~~~-~~~l~~L 77 (570)
++|+.|++++|. .....|..+.. ++|++|++++|.++.++. .+ .+++|++|+|++|+++.++.. ++.+++|
T Consensus 26 ~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCc-----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 468888887643 22334566766 888888888888887764 34 788888888888888877654 8888888
Q ss_pred cEEccCcccCCCCCCCC-cccccCCCCcEEEecCCCCCCcCCC-cc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEE
Q 044933 78 NQIITAAFNFFSKIPTP-SLTQHLNNLVILNLSGCKNLQSLPA-RI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMH 152 (570)
Q Consensus 78 ~~L~Ls~~~~l~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~p~-~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~ 152 (570)
++|++++|. +++++.+ .+ +.+++|++|++++|...+.+|. .+ .+++|++|++++|......|.... ++|++|+
T Consensus 101 ~~L~Ls~n~-l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 101 KYLNLMGNP-YQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CEEECTTCC-CSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred cEEECCCCc-ccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 888888875 6665433 45 7888888888888886666663 34 788888888888876555554433 5677777
Q ss_pred ecCcCCCcCChhc-cCCCCCCEEeccCCCCCCcC--Cc-----------------------------ccCCCCCCCEEEE
Q 044933 153 LDGTALEELPSSI-ECLSKLSHLGLADCKSLKSL--PS-----------------------------GLCKLKSLDVLII 200 (570)
Q Consensus 153 L~~~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~l--p~-----------------------------~l~~l~~L~~L~L 200 (570)
+++|.+..+|..+ ..+++|++|++++|.+.+.. |. .+..+++|+.|++
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 7777777666553 45777777777777765421 11 1122233344444
Q ss_pred cCCCCCCC-----------------------------------cchhhcCCCcCceeccccccCccCCchh-ccCCCCcE
Q 044933 201 DGCSNLQR-----------------------------------LPEELGNLEALDILHAIGTSITEVPPSI-VRLKRVRG 244 (570)
Q Consensus 201 ~~~~~~~~-----------------------------------~p~~l~~l~~L~~L~l~~n~i~~l~~~l-~~l~~L~~ 244 (570)
++|...+. ++..+...++|+.|++++|.+..+|..+ ..+++|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 43332110 0111122356888888888888888876 47899999
Q ss_pred EEeccCCCCCCcc--ccccccCCCCCeeecccCCCCCcC---cccCCCCCccEEEccCCcccccCccccCCCCcCEEccc
Q 044933 245 IYFGRNKGLSLPI--TFSVDGLQNLRDLNLNDCGIMELP---ESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIR 319 (570)
Q Consensus 245 L~l~~n~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~ip---~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 319 (570)
|++++|.+..... +..++.+++|+.|++++|.+++++ ..+..+++|++|+|++|.++.+|..+..+++|++|+++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECT
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECC
Confidence 9999998433221 233678889999999999998865 45788999999999999999999888889999999999
Q ss_pred CccccCcCCC-CCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHh
Q 044933 320 YCERLQSLPK-LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREA 398 (570)
Q Consensus 320 ~~~~l~~lp~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n 398 (570)
+|+ ++.+|. .+++|+.|++++|. ++.++ ..+++|++|++++| .++.+.+ ...++.|+.+++++|
T Consensus 419 ~N~-l~~l~~~~~~~L~~L~Ls~N~-l~~~~-----~~l~~L~~L~Ls~N------~l~~ip~--~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 419 STG-IRVVKTCIPQTLEVLDVSNNN-LDSFS-----LFLPRLQELYISRN------KLKTLPD--ASLFPVLLVMKISRN 483 (549)
T ss_dssp TSC-CSCCCTTSCTTCSEEECCSSC-CSCCC-----CCCTTCCEEECCSS------CCSSCCC--GGGCTTCCEEECCSS
T ss_pred CCC-cccccchhcCCceEEECCCCC-hhhhc-----ccCChhcEEECCCC------ccCcCCC--cccCccCCEEecCCC
Confidence 977 444443 45688999998874 33332 24677888888877 3433322 234667778888888
Q ss_pred hhcCCCCCCCeeEeecCCCCCcceeecCCCcEEEEEcC
Q 044933 399 REKISYPSLRGRGFLPWNKIPKWFSFQSAGSCVTLEMP 436 (570)
Q Consensus 399 ~~~~~~~~~~~~~~~pg~~ip~~f~~~~~~~~i~~~lp 436 (570)
++++..+... ...+..-.....+|.++.+.|
T Consensus 484 ~l~~~~~~~~-------~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 484 QLKSVPDGIF-------DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCCCCTTGG-------GGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcCHHHH-------hcCcccCEEEecCCCccCCCc
Confidence 7764322211 134444455556666555544
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-35 Score=322.01 Aligned_cols=381 Identities=18% Similarity=0.106 Sum_probs=292.7
Q ss_pred CCCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCC-CCCc-CCCCcEEEECCCCChhhcc-ccccCccC
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLL-PSNI-HPEKLVLLEMPHSNIEQLF-DSVQDYGK 76 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~n~l~~l~-~~~~~l~~ 76 (570)
+++||.|++++|. .....|..+.. ++|++|++++|.++.+ |..+ .+++|++|+|++|.++.++ ..++.+++
T Consensus 55 l~~L~~L~Ls~n~-----l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 55 FSELQWLDLSRCE-----IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp CTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CccCcEEeCCCCc-----ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 4688888887643 22334556666 8888888888888877 5555 7888888888888888775 56788888
Q ss_pred CcEEccCcccCCCCCCC-CcccccCCCCcEEEecCCCCCCcCCCcc----------------------------CCCCCC
Q 044933 77 LNQIITAAFNFFSKIPT-PSLTQHLNNLVILNLSGCKNLQSLPARI----------------------------HLKLLK 127 (570)
Q Consensus 77 L~~L~Ls~~~~l~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~p~~~----------------------------~l~~L~ 127 (570)
|++|++++|. ++++.. ..+ +.+++|++|++++|.+.+..|..+ ...+|+
T Consensus 130 L~~L~L~~n~-l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 130 LKKLNVAHNF-IHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp CCEEECCSSC-CCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCEEeCCCCc-ccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 8888888865 665442 345 778888888888877655433322 112455
Q ss_pred EEeeeCCCC-----------------------------------------------------------------------
Q 044933 128 ELDLSGCSK----------------------------------------------------------------------- 136 (570)
Q Consensus 128 ~L~Ls~~~~----------------------------------------------------------------------- 136 (570)
.|++++|..
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 555555432
Q ss_pred ---------CCCCCCCCC-CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCC
Q 044933 137 ---------LKRLPEISP-GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNL 206 (570)
Q Consensus 137 ---------~~~~p~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 206 (570)
+..+|.+.. ++|++|++++|.++.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+.
T Consensus 288 ~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp SEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred CEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 122332222 58999999999999999 45 9999999999999766655 5678999999999999876
Q ss_pred CC--cchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC-cCcc
Q 044933 207 QR--LPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPES 283 (570)
Q Consensus 207 ~~--~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~ 283 (570)
+. .|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+........+..+++|+.|++++|.+++ .|..
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 55 47889999999999999999999999999999999999999995444333678899999999999999998 6888
Q ss_pred cCCCCCccEEEccCCcccc--cCccccCCCCcCEEcccCccccCcCCC---CCcccceecccccccCCcCCCCCCCCCcc
Q 044933 284 LGLLSSVTTLHLEGNNFER--IPESIIQLSNLERLFIRYCERLQSLPK---LPCNLLSLDAHHCTALESLPGLFPSSDES 358 (570)
Q Consensus 284 l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~Ls~~~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 358 (570)
+..+++|++|++++|.++. +|..+..+++|+.|++++|+..+..|. ..++|+.|++++|......+..+ ..++
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~ 521 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY--NQLY 521 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT--TTCT
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc--cCCC
Confidence 9999999999999999985 788899999999999999987666554 35789999999986555445544 3567
Q ss_pred ccceeeccCCcccchhhhhhhhhHHHHHHH-HHHHHHHHHhhhc
Q 044933 359 YLRTLYLSDNFKLDRNEIRGIVKGALQKIQ-LLATARLREAREK 401 (570)
Q Consensus 359 ~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~-~L~~l~l~~n~~~ 401 (570)
+|+.|++++| .++.+.+. +..++ .|+.+++++|++.
T Consensus 522 ~L~~L~l~~N------~l~~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 522 SLSTLDCSFN------RIETSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECTTS------CCCCEESC-GGGSCTTCCEEECCSCCCC
T ss_pred cCCEEECCCC------cCcccCHh-HhhhcccCcEEEccCCCcc
Confidence 8999999887 55544333 66665 4778888888765
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-34 Score=319.12 Aligned_cols=333 Identities=17% Similarity=0.154 Sum_probs=285.4
Q ss_pred CCCceEEEEecCCccccccccc-----------------ccCCCC--C-CCccEEEecCCCCC-CCCCCc-CCCCcEEEE
Q 044933 1 MPNLRILKFYSSMNEENKCKMS-----------------YFQGPG--F-TEVRYLHWHGYPLK-LLPSNI-HPEKLVLLE 58 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~-----------------lp~~~~--~-~~L~~L~l~~~~l~-~lp~~~-~~~~L~~L~ 58 (570)
|++||+|++++|.. ... +|+.+. . ++|++|++++|.+. .+|..+ .+++|++|+
T Consensus 205 l~~L~~L~Ls~n~l-----~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 205 LTKLRQFYMGNSPF-----VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp CTTCCEEEEESCCC-----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred ccCCCEEECcCCcc-----ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 57999999987653 222 899999 7 99999999999865 788777 899999999
Q ss_pred CCCCC-hhh--ccccccCc------cCCcEEccCcccCCCCCCCC-cccccCCCCcEEEecCCCCCCcCCCcc-CCCCCC
Q 044933 59 MPHSN-IEQ--LFDSVQDY------GKLNQIITAAFNFFSKIPTP-SLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLK 127 (570)
Q Consensus 59 L~~n~-l~~--l~~~~~~l------~~L~~L~Ls~~~~l~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~ 127 (570)
|++|+ ++. +|..+..+ ++|++|++++|. ++.+|.. .+ +.+++|++|++++|.+.+.+| .+ .+++|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 99998 884 88888776 999999999977 7766642 56 899999999999999888999 55 899999
Q ss_pred EEeeeCCCCCCCCCCCCC--CC-ccEEEecCcCCCcCChhccCCC--CCCEEeccCCCCCCcCCcccC-------CCCCC
Q 044933 128 ELDLSGCSKLKRLPEISP--GN-ITTMHLDGTALEELPSSIECLS--KLSHLGLADCKSLKSLPSGLC-------KLKSL 195 (570)
Q Consensus 128 ~L~Ls~~~~~~~~p~~~~--~~-L~~L~L~~~~i~~lp~~~~~l~--~L~~L~L~~~~~~~~lp~~l~-------~l~~L 195 (570)
+|++++|... .+|.... ++ |++|++++|.++.+|..+..+. +|++|++++|.+.+..|..+. .+++|
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 9999998644 6765544 66 9999999999999999887765 999999999999999998888 88899
Q ss_pred CEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccC--------CCCcEEEeccCCCCCCccccccc--cCC
Q 044933 196 DVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRL--------KRVRGIYFGRNKGLSLPITFSVD--GLQ 265 (570)
Q Consensus 196 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l--------~~L~~L~l~~n~~~~~~~~~~~~--~l~ 265 (570)
++|++++|.+....+..+..+++|+.|++++|.++.+|..+... ++|+.|++++|.+. .+|..+. .++
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~ 513 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLP 513 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCT
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCC
Confidence 99999999887444445677999999999999999988765432 29999999999955 4566665 999
Q ss_pred CCCeeecccCCCCCcCcccCCCCCccEEEcc------CCccc-ccCccccCCCCcCEEcccCccccCcCCC-CCccccee
Q 044933 266 NLRDLNLNDCGIMELPESLGLLSSVTTLHLE------GNNFE-RIPESIIQLSNLERLFIRYCERLQSLPK-LPCNLLSL 337 (570)
Q Consensus 266 ~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~------~n~l~-~lp~~l~~l~~L~~L~Ls~~~~l~~lp~-~~~~L~~L 337 (570)
+|+.|+|++|.++++|..+..+++|+.|+|+ +|.+. .+|..+..+++|+.|+|++|+. +.+|. ..++|+.|
T Consensus 514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L 592 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVL 592 (636)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEE
T ss_pred CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEE
Confidence 9999999999999999999999999999995 45554 7899999999999999999887 78886 56899999
Q ss_pred cccccccC
Q 044933 338 DAHHCTAL 345 (570)
Q Consensus 338 ~l~~c~~l 345 (570)
++++|+..
T Consensus 593 ~Ls~N~l~ 600 (636)
T 4eco_A 593 DIKDNPNI 600 (636)
T ss_dssp ECCSCTTC
T ss_pred ECcCCCCc
Confidence 99998644
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-35 Score=329.08 Aligned_cols=335 Identities=16% Similarity=0.142 Sum_probs=282.9
Q ss_pred ccCCCCC-CCccEEEecCCCCCC------------------CCCCc---CCCCcEEEECCCCChh-hccccccCccCCcE
Q 044933 23 YFQGPGF-TEVRYLHWHGYPLKL------------------LPSNI---HPEKLVLLEMPHSNIE-QLFDSVQDYGKLNQ 79 (570)
Q Consensus 23 lp~~~~~-~~L~~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~ 79 (570)
+|..+.. ++|++|++++|.+.. +|..+ .+++|++|+|++|++. .+|..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 7877777 999999999999998 99886 6999999999999876 68999999999999
Q ss_pred EccCcccCCCC--CCCCcc------cccCCCCcEEEecCCCCCCcCCC--cc-CCCCCCEEeeeCCCCCCCCCCCCC-CC
Q 044933 80 IITAAFNFFSK--IPTPSL------TQHLNNLVILNLSGCKNLQSLPA--RI-HLKLLKELDLSGCSKLKRLPEISP-GN 147 (570)
Q Consensus 80 L~Ls~~~~l~~--~~~~~~------~~~l~~L~~L~L~~~~~~~~~p~--~~-~l~~L~~L~Ls~~~~~~~~p~~~~-~~ 147 (570)
|+|++|+.+++ +| ..+ +..+++|+.|+|++|.+. .+|. .+ .+++|++|+|++|... .+|.+.. ++
T Consensus 520 L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSE
T ss_pred EECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCc
Confidence 99999865665 33 222 134569999999999977 8888 66 8999999999998755 8884433 89
Q ss_pred ccEEEecCcCCCcCChhccCCCC-CCEEeccCCCCCCcCCcccCCCCC--CCEEEEcCCCCCCCcchh---hc--CCCcC
Q 044933 148 ITTMHLDGTALEELPSSIECLSK-LSHLGLADCKSLKSLPSGLCKLKS--LDVLIIDGCSNLQRLPEE---LG--NLEAL 219 (570)
Q Consensus 148 L~~L~L~~~~i~~lp~~~~~l~~-L~~L~L~~~~~~~~lp~~l~~l~~--L~~L~L~~~~~~~~~p~~---l~--~l~~L 219 (570)
|+.|+|++|.++.+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|.. ++ .+++|
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 99999999999999999999999 999999999976 88888877754 999999999988766532 23 34589
Q ss_pred ceeccccccCccCCchhc-cCCCCcEEEeccCCCCCCcccccc-c-------cCCCCCeeecccCCCCCcCcccC--CCC
Q 044933 220 DILHAIGTSITEVPPSIV-RLKRVRGIYFGRNKGLSLPITFSV-D-------GLQNLRDLNLNDCGIMELPESLG--LLS 288 (570)
Q Consensus 220 ~~L~l~~n~i~~l~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~-~-------~l~~L~~L~Ls~n~l~~ip~~l~--~l~ 288 (570)
+.|++++|.+..+|..+. .+++|+.|++++|.+. .+|..+ . ++++|+.|+|++|+++.+|..+. .++
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 999999999999998765 8999999999999855 333322 2 23499999999999999999987 999
Q ss_pred CccEEEccCCcccccCccccCCCCcCEEcccC------ccccCcCCCC---CcccceecccccccCCcCCCCCCCCCccc
Q 044933 289 SVTTLHLEGNNFERIPESIIQLSNLERLFIRY------CERLQSLPKL---PCNLLSLDAHHCTALESLPGLFPSSDESY 359 (570)
Q Consensus 289 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~------~~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 359 (570)
+|+.|+|++|.++.+|..+..+++|+.|+|++ |+..+.+|.. .++|+.|++++|.. ..+|..+. ++
T Consensus 754 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~----~~ 828 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT----PQ 828 (876)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC----SS
T ss_pred CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc----CC
Confidence 99999999999999999999999999999987 5566777754 57899999999866 77777643 58
Q ss_pred cceeeccCC
Q 044933 360 LRTLYLSDN 368 (570)
Q Consensus 360 L~~L~l~~~ 368 (570)
|+.|++++|
T Consensus 829 L~~LdLs~N 837 (876)
T 4ecn_A 829 LYILDIADN 837 (876)
T ss_dssp SCEEECCSC
T ss_pred CCEEECCCC
Confidence 999999988
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=320.87 Aligned_cols=382 Identities=16% Similarity=0.147 Sum_probs=184.9
Q ss_pred CceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCC-c-CCCCcEEEECCCCChhhcc-ccccCccCCc
Q 044933 3 NLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHSNIEQLF-DSVQDYGKLN 78 (570)
Q Consensus 3 ~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~ 78 (570)
+++.|++++|. .....+..+.. ++|++|++++|.++.++.. | .+++|++|+|++|+++.++ ..+..+++|+
T Consensus 29 ~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 29 STKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCCEEECCSCC-----CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cccEEEccCCc-----cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 46666665432 11222334444 6677777777766666543 3 5667777777777766654 4566677777
Q ss_pred EEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCC-cCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCc----cE
Q 044933 79 QIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQ-SLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNI----TT 150 (570)
Q Consensus 79 ~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L----~~ 150 (570)
+|++++|. +++++...+ +.+++|++|++++|.+.+ .+|..+ ++++|++|++++|......+.... .+| +.
T Consensus 104 ~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 104 KLVAVETN-LASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp EEECTTSC-CCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccc-cccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 77776654 666655455 666777777777766554 356555 567777777766643322221111 222 44
Q ss_pred EEecCcCCCcCChhccCCCCCCEEeccCC---------------------------------------------------
Q 044933 151 MHLDGTALEELPSSIECLSKLSHLGLADC--------------------------------------------------- 179 (570)
Q Consensus 151 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--------------------------------------------------- 179 (570)
|++++|.++.++.......+|+.|++++|
T Consensus 182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 55555554443332211223344433333
Q ss_pred -------CCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCch-----------------
Q 044933 180 -------KSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPS----------------- 235 (570)
Q Consensus 180 -------~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~----------------- 235 (570)
...+..|..+..+++|+.|++++|... .+|..+..+ +|+.|++++|.+..+|..
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccc
Confidence 111222333444455555555554432 344444444 555555555555544431
Q ss_pred ---hccCCCCcEEEeccCCCCCCc-cccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccC--ccccC
Q 044933 236 ---IVRLKRVRGIYFGRNKGLSLP-ITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIP--ESIIQ 309 (570)
Q Consensus 236 ---l~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp--~~l~~ 309 (570)
...+++|+.|++++|.+.... .+..+.++++|++|++++|.+.+++..+..+++|+.|++++|.++.++ ..+..
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 023344444444444321110 122333444444444444444444333444444555555544444332 23444
Q ss_pred CCCcCEEcccCccccCcCCCC---CcccceecccccccC-CcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHH
Q 044933 310 LSNLERLFIRYCERLQSLPKL---PCNLLSLDAHHCTAL-ESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQ 385 (570)
Q Consensus 310 l~~L~~L~Ls~~~~l~~lp~~---~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~ 385 (570)
+++|++|++++|......|.. .++|+.|++++|... ..++..+ ..+++|+.|++++| .+.++.|.++.
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n------~l~~~~~~~~~ 491 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQC------QLEQLSPTAFN 491 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTS------CCCEECTTTTT
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCC------ccccCChhhhh
Confidence 455555555554433333321 334555555554332 1233222 23444555555444 45555555555
Q ss_pred HHHHHHHHHHHHhhhc
Q 044933 386 KIQLLATARLREAREK 401 (570)
Q Consensus 386 ~l~~L~~l~l~~n~~~ 401 (570)
++++|+.+++++|+++
T Consensus 492 ~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 492 SLSSLQVLNMASNQLK 507 (570)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred cccCCCEEeCCCCcCC
Confidence 5556666666655544
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=330.41 Aligned_cols=384 Identities=17% Similarity=0.170 Sum_probs=230.0
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCC-CCCC-CCCc-CCCCcEEEECCCCChhhc-cccccCccC
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYP-LKLL-PSNI-HPEKLVLLEMPHSNIEQL-FDSVQDYGK 76 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~-l~~l-p~~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~ 76 (570)
++||.|++++|. .....|..+.. ++|++|++++|. ...+ |..| .+++|++|+|++|+++.+ |..++.+++
T Consensus 24 ~~l~~LdLs~N~-----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCC-----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCcCEEECCCCc-----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 578888887654 23344666766 888888888883 4455 4445 778888888888888866 667888888
Q ss_pred CcEEccCcccCCCC-CCCCcccccCCCCcEEEecCCCCCCcCCC-cc-CCCCCCEEeeeCCCCCCCCCCCCC----CC--
Q 044933 77 LNQIITAAFNFFSK-IPTPSLTQHLNNLVILNLSGCKNLQSLPA-RI-HLKLLKELDLSGCSKLKRLPEISP----GN-- 147 (570)
Q Consensus 77 L~~L~Ls~~~~l~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~-~l~~L~~L~Ls~~~~~~~~p~~~~----~~-- 147 (570)
|++|+|++|. +++ ++...++..+++|++|+|++|.+.+..+. .+ ++++|++|+|++|......+.... ++
T Consensus 99 L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp CCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred cCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 8888888876 554 33332227888888888888887665443 34 788888888888764333222111 23
Q ss_pred ----------------------------ccEEEecCcCCCc-CChhc---------------------------------
Q 044933 148 ----------------------------ITTMHLDGTALEE-LPSSI--------------------------------- 165 (570)
Q Consensus 148 ----------------------------L~~L~L~~~~i~~-lp~~~--------------------------------- 165 (570)
|+.|++++|.++. ++..+
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 5555555554431 11111
Q ss_pred ---cC--CCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-CchhccC
Q 044933 166 ---EC--LSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRL 239 (570)
Q Consensus 166 ---~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l 239 (570)
.. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+..+ |..+..+
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 01 14566666666655555555566666666666666665555555566666666666666666544 4455666
Q ss_pred CCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCcc-------------
Q 044933 240 KRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPES------------- 306 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~------------- 306 (570)
++|+.|++++|. +....+..+.++++|+.|++++|.+++++. +++|+.|++++|.++.+|..
T Consensus 338 ~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 338 PKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp TTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCc
Confidence 666666666665 333334445566666666666666555432 34444444444444444321
Q ss_pred ---------ccCCCCcCEEcccCccccCc----CCCCCcccceecccccccCCcCCCCCC---CCCccccceeeccCCcc
Q 044933 307 ---------IIQLSNLERLFIRYCERLQS----LPKLPCNLLSLDAHHCTALESLPGLFP---SSDESYLRTLYLSDNFK 370 (570)
Q Consensus 307 ---------l~~l~~L~~L~Ls~~~~l~~----lp~~~~~L~~L~l~~c~~l~~~~~~~~---~~~~~~L~~L~l~~~~~ 370 (570)
+..+++|+.|+|++|+.... .+...++|+.|+++++..-...+.... ...+++|+.|++++
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~--- 489 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH--- 489 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH---
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC---
Confidence 23566677777776654321 122345677777766543211111100 12345566666654
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhhcC
Q 044933 371 LDRNEIRGIVKGALQKIQLLATARLREAREKI 402 (570)
Q Consensus 371 L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 402 (570)
|.++++.+.++.++++|+.|++++|++++
T Consensus 490 ---N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 490 ---NYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp ---HHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ---CcccccChhHccchhhhheeECCCCCCCc
Confidence 48888888888888888888888888773
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=326.48 Aligned_cols=297 Identities=19% Similarity=0.171 Sum_probs=208.2
Q ss_pred cccccCCCCC-CCccEEEecCCCCCCCC-CCc-CCCCcEEEECCCCCh-hhc-cccccCccCCcEEccCcccCCCCCCCC
Q 044933 20 KMSYFQGPGF-TEVRYLHWHGYPLKLLP-SNI-HPEKLVLLEMPHSNI-EQL-FDSVQDYGKLNQIITAAFNFFSKIPTP 94 (570)
Q Consensus 20 ~~~lp~~~~~-~~L~~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~n~l-~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~~ 94 (570)
-..+|. . ++|++|++++|.++.++ ..+ .+++|++|+|++|.. ..+ +..++++++|++|+|++|. ++++.+.
T Consensus 16 L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~ 91 (844)
T 3j0a_A 16 LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPD 91 (844)
T ss_dssp SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTT
T ss_pred CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHh
Confidence 345666 4 89999999999999774 455 899999999999954 466 6789999999999999976 8888777
Q ss_pred cccccCCCCcEEEecCCCCCCcCCCc--c-CCCCCCEEeeeCCCCCCCCCC--CC-CCCccEEEecCcCCCcC-ChhccC
Q 044933 95 SLTQHLNNLVILNLSGCKNLQSLPAR--I-HLKLLKELDLSGCSKLKRLPE--IS-PGNITTMHLDGTALEEL-PSSIEC 167 (570)
Q Consensus 95 ~~~~~l~~L~~L~L~~~~~~~~~p~~--~-~l~~L~~L~Ls~~~~~~~~p~--~~-~~~L~~L~L~~~~i~~l-p~~~~~ 167 (570)
.| ..+++|++|+|++|.+.+.+|.. + .+++|++|+|++|......+. +. .++|++|++++|.++.+ +..+..
T Consensus 92 ~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred Hc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 88 99999999999999988866654 4 899999999999876554432 22 28999999999999864 455655
Q ss_pred C--CCCCEEeccCCCCCCcCCcccCCCCC------CCEEEEcCCCCCCCcchhhc-------------------------
Q 044933 168 L--SKLSHLGLADCKSLKSLPSGLCKLKS------LDVLIIDGCSNLQRLPEELG------------------------- 214 (570)
Q Consensus 168 l--~~L~~L~L~~~~~~~~lp~~l~~l~~------L~~L~L~~~~~~~~~p~~l~------------------------- 214 (570)
+ ++|+.|++++|.+.+..|..+..+++ |+.|++++|......+..+.
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 5 67777777777766666665555544 66777766644333322211
Q ss_pred -----------C--CCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc
Q 044933 215 -----------N--LEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL 280 (570)
Q Consensus 215 -----------~--l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i 280 (570)
. .++|+.|++++|.+..+ +..+..+++|+.|++++|. +....+..+.++++|++|+|++|.++++
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 1 14566666666666643 3445666666666666666 3344444566666666666666666664
Q ss_pred -CcccCCCCCccEEEccCCcccccC-ccccCCCCcCEEcccCcc
Q 044933 281 -PESLGLLSSVTTLHLEGNNFERIP-ESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 281 -p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~ 322 (570)
|..+..+++|+.|+|++|.++.++ ..+..+++|++|+|++|.
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 556666666666666666666554 245556666666666654
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.1e-34 Score=318.20 Aligned_cols=385 Identities=18% Similarity=0.184 Sum_probs=186.2
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCC-c-CCCCcEEEECCCCChhhccc-cccCccCC
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHSNIEQLFD-SVQDYGKL 77 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~l~~l~~-~~~~l~~L 77 (570)
++|+.|++++|.. ....+..+.. ++|++|++++|.+..+++. + .+++|++|+|++|+++.+|. .++.+++|
T Consensus 25 ~~l~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQL-----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCC-----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCC-----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 3566777755431 1112223444 6666666666666555433 2 55666666666666666554 35566666
Q ss_pred cEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCC----CCCCCccEEE
Q 044933 78 NQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPE----ISPGNITTMH 152 (570)
Q Consensus 78 ~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~----~~~~~L~~L~ 152 (570)
++|++++|. ++++++.+| +.+++|++|++++|.+.+..|..+ .+++|++|++++|......+. ...++|++|+
T Consensus 100 ~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 100 TELHLMSNS-IQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp SEEECCSSC-CCCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CEEECCCCc-cCccChhHc-cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 666666654 555554455 556666666666665555444444 555566666555542222111 0113444444
Q ss_pred ecCcCCCcCCh----------------------------------------------------hccCCC--CCCEEeccC
Q 044933 153 LDGTALEELPS----------------------------------------------------SIECLS--KLSHLGLAD 178 (570)
Q Consensus 153 L~~~~i~~lp~----------------------------------------------------~~~~l~--~L~~L~L~~ 178 (570)
+++|.+++++. .+..++ +|+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 44444433221 111111 133333333
Q ss_pred CCCCCcCCcccCCCCCCCEEEEcCCCCCCCcch---------------------------------hhcCCCcCceeccc
Q 044933 179 CKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPE---------------------------------ELGNLEALDILHAI 225 (570)
Q Consensus 179 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~---------------------------------~l~~l~~L~~L~l~ 225 (570)
|.+.+..|..+..+++|++|++++|.+.+..|. .++.+++|++|+++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 333333333333333333333333333322222 23334444444444
Q ss_pred cccCccCCc-hhccCCCCcEEEeccCCCCCCcc-cccccc--CCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcc
Q 044933 226 GTSITEVPP-SIVRLKRVRGIYFGRNKGLSLPI-TFSVDG--LQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNF 300 (570)
Q Consensus 226 ~n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~--l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l 300 (570)
+|.+..+++ .+.++++|++|++++|......+ ...+.. .++|+.|++++|+++++ |.++..+++|+.|+|++|.+
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 444443322 33444444444444443111100 011111 13455555555555553 45566666666666666666
Q ss_pred c-ccC-ccccCCCCcCEEcccCccccCcCCC---CCcccceeccccccc--CCcCCCCCCCCCccccceeeccCCcccch
Q 044933 301 E-RIP-ESIIQLSNLERLFIRYCERLQSLPK---LPCNLLSLDAHHCTA--LESLPGLFPSSDESYLRTLYLSDNFKLDR 373 (570)
Q Consensus 301 ~-~lp-~~l~~l~~L~~L~Ls~~~~l~~lp~---~~~~L~~L~l~~c~~--l~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 373 (570)
+ .+| ..+..+++|++|++++|+.....+. ..++|+.|++.+|.. +..++..+ ..+++|+.|++++|
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N----- 490 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNN----- 490 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSS-----
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCC-----
Confidence 5 344 4556666666666666653322221 234566666655432 12233322 34566777776655
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 044933 374 NEIRGIVKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 374 ~~i~~~~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
.++++.+.++.+++.|+.+++++|+++
T Consensus 491 -~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 491 -NIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred -CCCcCChhhhccccccCEEeCCCCCcc
Confidence 566666666777777777777777665
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=314.96 Aligned_cols=382 Identities=20% Similarity=0.206 Sum_probs=265.9
Q ss_pred CCCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhccc-cccCccC
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQLFD-SVQDYGK 76 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l~~-~~~~l~~ 76 (570)
+++||.|++++|. .....|..+.. ++|++|++++|.++.+|. .| .+++|++|++++|+++.++. .++.+++
T Consensus 51 l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 51 FPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp CSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCceEEECCCCc-----CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 5688999997643 22233455666 889999999888887764 34 78888888888888888765 5788888
Q ss_pred CcEEccCcccCCCCCCC-CcccccCCCCcEEEecCCCCCCcCCCcc-CCCCC----CEEeeeCCCCCCCC----------
Q 044933 77 LNQIITAAFNFFSKIPT-PSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLL----KELDLSGCSKLKRL---------- 140 (570)
Q Consensus 77 L~~L~Ls~~~~l~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L----~~L~Ls~~~~~~~~---------- 140 (570)
|++|++++|. ++++.. ..+ +.+++|++|++++|.+.+..|..+ .+++| +.|++++|......
T Consensus 126 L~~L~L~~n~-l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 126 LKELNVAHNL-IQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203 (570)
T ss_dssp CCEEECCSSC-CCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccEEecCCCc-cceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence 8888888865 666543 345 788888888888887665544444 34444 45555544321111
Q ss_pred -----------------------------------------------------------------------CCCCC--CC
Q 044933 141 -----------------------------------------------------------------------PEISP--GN 147 (570)
Q Consensus 141 -----------------------------------------------------------------------p~~~~--~~ 147 (570)
|.... ++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 11111 56
Q ss_pred ccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc
Q 044933 148 ITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 148 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 227 (570)
|+.|++++|.++++|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|......+. ..+++|+.|++++|
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n 357 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN 357 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS
T ss_pred ccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCC
Confidence 777778777777777777777 7888888877755 5554 3567777777777766555444 66788888888888
Q ss_pred cCccC---CchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC--cccCCCCCccEEEccCCcccc
Q 044933 228 SITEV---PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP--ESLGLLSSVTTLHLEGNNFER 302 (570)
Q Consensus 228 ~i~~l---~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip--~~l~~l~~L~~L~L~~n~l~~ 302 (570)
.+... +..+..+++|+.|++++|.+. ...+ .+..+++|+.|++++|.+.+.+ ..+..+++|+.|++++|.+..
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccCccccccccccccCccCEEECCCCccc-cccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 88754 567778888888888888733 2222 3778888888888888887753 467788888888888888774
Q ss_pred -cCccccCCCCcCEEcccCcccc-CcCCC---CCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhh
Q 044933 303 -IPESIIQLSNLERLFIRYCERL-QSLPK---LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIR 377 (570)
Q Consensus 303 -lp~~l~~l~~L~~L~Ls~~~~l-~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~ 377 (570)
.|..+..+++|++|++++|+.. +.+|. ..++|+.|++++|......+..+ ..+++|+.|++++| .++
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n------~l~ 507 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASN------QLK 507 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSS------CCS
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh--hcccCCCEEeCCCC------cCC
Confidence 4567778888888888888755 34554 34678888888875544434444 24677888888766 566
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcCCCC
Q 044933 378 GIVKGALQKIQLLATARLREAREKISYP 405 (570)
Q Consensus 378 ~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 405 (570)
++.+..+.++++|+.+++++|++++..+
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 6666777777788888888887765443
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=312.43 Aligned_cols=368 Identities=18% Similarity=0.163 Sum_probs=231.1
Q ss_pred eEEEEecCCcccccccccccCCCCCCCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhc-cccccCccCCcEEc
Q 044933 5 RILKFYSSMNEENKCKMSYFQGPGFTEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQII 81 (570)
Q Consensus 5 r~L~l~~~~~~~~~~~~~lp~~~~~~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~ 81 (570)
|.|+++++. -..+|.++. ++|++|++++|.++.++. .+ .+++|++|+|++|+++.+ |..++.+++|++|+
T Consensus 3 ~~l~ls~n~------l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNG------LIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSC------CSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCC------ccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 567776543 235776655 899999999999998885 34 899999999999999987 67899999999999
Q ss_pred cCcccCCCCCCCCcccccCCCCcEEEecCCCCCC-cCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCc--cEEEecCcC
Q 044933 82 TAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQ-SLPARI-HLKLLKELDLSGCSKLKRLPEISPGNI--TTMHLDGTA 157 (570)
Q Consensus 82 Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L--~~L~L~~~~ 157 (570)
|++|. +++++.. .+++|++|+|++|.+.+ .+|..+ .+++|++|++++|.... ......++| ++|++++|.
T Consensus 76 Ls~N~-l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 76 LSHNK-LVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCSSC-CCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECT
T ss_pred cCCCc-eeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeeccc
Confidence 99976 8877753 68999999999999877 477777 89999999999987443 111111456 999999998
Q ss_pred C--C-cCChhccC--------------------------CCCCCEEeccCCC-------CCCcCCcccCCC---------
Q 044933 158 L--E-ELPSSIEC--------------------------LSKLSHLGLADCK-------SLKSLPSGLCKL--------- 192 (570)
Q Consensus 158 i--~-~lp~~~~~--------------------------l~~L~~L~L~~~~-------~~~~lp~~l~~l--------- 192 (570)
+ . ..|..+.. +++|+.|++++|. ..+.+| .+..+
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLN 228 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccc
Confidence 8 3 34444433 3344444444443 111111 12222
Q ss_pred ------------------CCCCEEEEcCCCCCCCcchhh-----cCCCcCceeccccccCccCC-chhccC---CCCcEE
Q 044933 193 ------------------KSLDVLIIDGCSNLQRLPEEL-----GNLEALDILHAIGTSITEVP-PSIVRL---KRVRGI 245 (570)
Q Consensus 193 ------------------~~L~~L~L~~~~~~~~~p~~l-----~~l~~L~~L~l~~n~i~~l~-~~l~~l---~~L~~L 245 (570)
++|++|++++|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEE
Confidence 245555555555544555555 5556666666665555 444 233222 445555
Q ss_pred EeccCCCCCCccccccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCcccc---cCccccCCCCcCEEcccCc
Q 044933 246 YFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNNFER---IPESIIQLSNLERLFIRYC 321 (570)
Q Consensus 246 ~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~Ls~~ 321 (570)
++++|.+..... ...+++|++|++++|.+++ +|..++.+++|++|+|++|.++. +|..+..+++|++|++++|
T Consensus 308 ~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 308 TVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp EEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred EcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 555555322221 1456666677777766666 56666666667777777666663 3445666666777777666
Q ss_pred cccCcCCC----CCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 044933 322 ERLQSLPK----LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLRE 397 (570)
Q Consensus 322 ~~l~~lp~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~ 397 (570)
+....+|. .+++|+.|++++|.....++..++ ++|+.|++++| .++.+. ..+..++.|+.+++++
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~L~~L~Ls~N------~l~~ip-~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP----PRIKVLDLHSN------KIKSIP-KQVVKLEALQELNVAS 453 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC----TTCCEEECCSS------CCCCCC-GGGGGCTTCCEEECCS
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc----ccCCEEECCCC------cccccc-hhhhcCCCCCEEECCC
Confidence 55443442 235666666666554333333221 35666666655 344332 2223566666666666
Q ss_pred hhhc
Q 044933 398 AREK 401 (570)
Q Consensus 398 n~~~ 401 (570)
|+++
T Consensus 454 N~l~ 457 (520)
T 2z7x_B 454 NQLK 457 (520)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 6655
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-33 Score=312.86 Aligned_cols=338 Identities=16% Similarity=0.141 Sum_probs=280.1
Q ss_pred CCCceEEEEecCCcccc------------cccccccCCCC--C-CCccEEEecCCCC-CCCCCCc-CCCCcEEEECCCCC
Q 044933 1 MPNLRILKFYSSMNEEN------------KCKMSYFQGPG--F-TEVRYLHWHGYPL-KLLPSNI-HPEKLVLLEMPHSN 63 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~------------~~~~~lp~~~~--~-~~L~~L~l~~~~l-~~lp~~~-~~~~L~~L~L~~n~ 63 (570)
|++||.|++++|..... .....+|..+. . ++|++|++++|.+ ..+|..+ .+++|++|+|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 67999999998754110 00013899987 6 9999999999985 5788777 89999999999998
Q ss_pred -hhh--ccccccCcc-------CCcEEccCcccCCCCCCC-CcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeee
Q 044933 64 -IEQ--LFDSVQDYG-------KLNQIITAAFNFFSKIPT-PSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLS 132 (570)
Q Consensus 64 -l~~--l~~~~~~l~-------~L~~L~Ls~~~~l~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls 132 (570)
++. +|..+..++ +|+.|+|++|. ++.+|. ..+ ..+++|+.|+|++|.+. .+|....+++|+.|+|+
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL-QKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH-TTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh-hcCCCCCEEECCCCCcc-cchhhcCCCcceEEECc
Confidence 875 787776665 99999999977 776664 256 89999999999999977 88833389999999999
Q ss_pred CCCCCCCCCCCCC--CC-ccEEEecCcCCCcCChhccCCCC--CCEEeccCCCCCCcCCc---ccC--CCCCCCEEEEcC
Q 044933 133 GCSKLKRLPEISP--GN-ITTMHLDGTALEELPSSIECLSK--LSHLGLADCKSLKSLPS---GLC--KLKSLDVLIIDG 202 (570)
Q Consensus 133 ~~~~~~~~p~~~~--~~-L~~L~L~~~~i~~lp~~~~~l~~--L~~L~L~~~~~~~~lp~---~l~--~l~~L~~L~L~~ 202 (570)
+|... .+|.... ++ |++|+|++|.++.+|..+..++. |+.|++++|.+.+.+|. .+. .+++|+.|++++
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 98755 7775544 66 99999999999999988877754 99999999998876653 222 345899999999
Q ss_pred CCCCCCcchh-hcCCCcCceeccccccCccCCchhccC--------CCCcEEEeccCCCCCCccccccc--cCCCCCeee
Q 044933 203 CSNLQRLPEE-LGNLEALDILHAIGTSITEVPPSIVRL--------KRVRGIYFGRNKGLSLPITFSVD--GLQNLRDLN 271 (570)
Q Consensus 203 ~~~~~~~p~~-l~~l~~L~~L~l~~n~i~~l~~~l~~l--------~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~ 271 (570)
|.+. .+|.. +..+++|+.|++++|.+..+|..+... ++|+.|++++|.+. .+|..+. .+++|+.|+
T Consensus 683 N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 683 NEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp SCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEE
T ss_pred CcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEE
Confidence 9887 56655 458999999999999999998866543 39999999999955 5566666 899999999
Q ss_pred cccCCCCCcCcccCCCCCccEEEccC------Cccc-ccCccccCCCCcCEEcccCccccCcCCC-CCcccceecccccc
Q 044933 272 LNDCGIMELPESLGLLSSVTTLHLEG------NNFE-RIPESIIQLSNLERLFIRYCERLQSLPK-LPCNLLSLDAHHCT 343 (570)
Q Consensus 272 Ls~n~l~~ip~~l~~l~~L~~L~L~~------n~l~-~lp~~l~~l~~L~~L~Ls~~~~l~~lp~-~~~~L~~L~l~~c~ 343 (570)
|++|.++++|..+..+++|+.|+|++ |.+. .+|..+..+++|+.|+|++|+. +.+|. ..++|+.|++++|+
T Consensus 760 Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred eCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 99999999999999999999999987 5554 7899999999999999999887 88886 56799999999987
Q ss_pred cCC
Q 044933 344 ALE 346 (570)
Q Consensus 344 ~l~ 346 (570)
...
T Consensus 839 l~~ 841 (876)
T 4ecn_A 839 NIS 841 (876)
T ss_dssp TCE
T ss_pred CCc
Confidence 543
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-32 Score=304.58 Aligned_cols=80 Identities=15% Similarity=0.322 Sum_probs=48.7
Q ss_pred CCCceEEEEecCCcccccccccccC-CCCC-CCccEEEecCCCCCCCCCC-c-CCCCcEEEECCCCChhhc-cccccCcc
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQ-GPGF-TEVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHSNIEQL-FDSVQDYG 75 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~-~~~~-~~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~l~~l-~~~~~~l~ 75 (570)
|++||.|++++|. ...+|. .+.. ++|++|++++|.+..+|.. + .+++|++|+|++|.++.+ +..+..++
T Consensus 72 l~~L~~L~L~~n~------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 145 (680)
T 1ziw_A 72 LPMLKVLNLQHNE------LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145 (680)
T ss_dssp CTTCCEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred ccCcCEEECCCCc------cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence 4677888886543 223444 3555 7777777777777666643 3 566777777777766654 33455566
Q ss_pred CCcEEccCccc
Q 044933 76 KLNQIITAAFN 86 (570)
Q Consensus 76 ~L~~L~Ls~~~ 86 (570)
+|++|++++|.
T Consensus 146 ~L~~L~L~~n~ 156 (680)
T 1ziw_A 146 NLQELLLSNNK 156 (680)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEEccCCc
Confidence 66666666543
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-33 Score=296.12 Aligned_cols=329 Identities=17% Similarity=0.159 Sum_probs=153.5
Q ss_pred EEEecCCCCCCCCCCcCCCCcEEEECCCCChhhc-cccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCC
Q 044933 34 YLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCK 112 (570)
Q Consensus 34 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 112 (570)
.++.++..++.+|. -+++|++|+|++|.++.+ +..+..+++|++|++++|.....++...| ..+++|++|+|++|.
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT-TTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc-cccccCCEEeCCCCc
Confidence 34444444555554 234555555555555544 33445555555555555432223333334 445555555555555
Q ss_pred CCCcCCCcc-CCCCCCEEeeeCCCCCCCCCC---CC-CCCccEEEecCcCCCcC-Chh-ccCCCCCCEEeccCCCCCCcC
Q 044933 113 NLQSLPARI-HLKLLKELDLSGCSKLKRLPE---IS-PGNITTMHLDGTALEEL-PSS-IECLSKLSHLGLADCKSLKSL 185 (570)
Q Consensus 113 ~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~---~~-~~~L~~L~L~~~~i~~l-p~~-~~~l~~L~~L~L~~~~~~~~l 185 (570)
+.+..|..+ .+++|++|++++|......+. +. .++|++|++++|.++.+ |.. +..+++|++|++++|.+.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 444444444 455555555555443221111 11 13455555555555544 222 445555555555555544444
Q ss_pred CcccCC----------------------------------CCCCCEEEEcCCCCCCCcchhhcCC---CcCceecccccc
Q 044933 186 PSGLCK----------------------------------LKSLDVLIIDGCSNLQRLPEELGNL---EALDILHAIGTS 228 (570)
Q Consensus 186 p~~l~~----------------------------------l~~L~~L~L~~~~~~~~~p~~l~~l---~~L~~L~l~~n~ 228 (570)
|..+.. +++|++|++++|.+.+..|..+..+ ++|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 444433 3444455555444444444333221 444444444442
Q ss_pred CccCC-----------chhc--cCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEE
Q 044933 229 ITEVP-----------PSIV--RLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLH 294 (570)
Q Consensus 229 i~~l~-----------~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~ 294 (570)
..... ..+. ..++|+.|++++|. +....+..+..+++|++|++++|.++++ |..+..+++|+.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 22100 0111 12455666666655 3333444455566666666666666553 44555666666666
Q ss_pred ccCCccccc-CccccCCCCcCEEcccCccccCcCCC---CCcccceecccccccCCcCCCCCCCCCccccceeeccCC
Q 044933 295 LEGNNFERI-PESIIQLSNLERLFIRYCERLQSLPK---LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDN 368 (570)
Q Consensus 295 L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~ 368 (570)
|++|.++.+ |..+..+++|++|+|++|+..+..|. ..++|++|++++|. ++.++.... ..+++|+.|++++|
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N 405 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIF-DRLTSLQKIWLHTN 405 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHh-ccCCcccEEEccCC
Confidence 666666544 34455566666666666544333332 23455555555532 233332111 23455555555544
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.2e-33 Score=303.08 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=84.0
Q ss_pred ccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc---CcccCCCCCccEEEccCCcccc-cCcc-ccCCC
Q 044933 237 VRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL---PESLGLLSSVTTLHLEGNNFER-IPES-IIQLS 311 (570)
Q Consensus 237 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i---p~~l~~l~~L~~L~L~~n~l~~-lp~~-l~~l~ 311 (570)
..+++|++|++++|. +....+..+..+++|+.|++++|.++++ |..+..+++|+.|+|++|.++. +|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 445566666666665 3334445556666666666666666653 2445666666666666666654 5532 45556
Q ss_pred CcCEEcccCccccCcCCCCC-cccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHH
Q 044933 312 NLERLFIRYCERLQSLPKLP-CNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLL 390 (570)
Q Consensus 312 ~L~~L~Ls~~~~l~~lp~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L 390 (570)
+|++|++++|+..+.+|... ++|+.|++++| .++.+|..+. .+++|+.|++++| .++.+.+.++..++.|
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N------~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASN------QLKSVPDGVFDRLTSL 499 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSS------CCCCCCTTSTTTCTTC
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCC------CCCCCCHHHHhcCCCC
Confidence 66666666665544444433 46666666664 3444444332 4455666666554 4443333334455555
Q ss_pred HHHHHHHhhhc
Q 044933 391 ATARLREAREK 401 (570)
Q Consensus 391 ~~l~l~~n~~~ 401 (570)
+.+++++|++.
T Consensus 500 ~~L~l~~N~~~ 510 (562)
T 3a79_B 500 QYIWLHDNPWD 510 (562)
T ss_dssp CCEECCSCCBC
T ss_pred CEEEecCCCcC
Confidence 55555555443
No 21
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.5e-32 Score=287.00 Aligned_cols=333 Identities=22% Similarity=0.236 Sum_probs=243.8
Q ss_pred ccccCCCCC-CC-------------ccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCccc
Q 044933 21 MSYFQGPGF-TE-------------VRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFN 86 (570)
Q Consensus 21 ~~lp~~~~~-~~-------------L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~ 86 (570)
..+|.++.. .+ +++|+++++.++.+|.. +++|++|++++|.++.+|.. +++|++|++++|.
T Consensus 48 ~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 48 RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN 122 (454)
T ss_dssp HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC
T ss_pred ccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc
Confidence 456777765 44 48889999888888874 57899999999999888754 4789999998865
Q ss_pred CCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhcc
Q 044933 87 FFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIE 166 (570)
Q Consensus 87 ~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~ 166 (570)
+++++. ..++|++|++++|.+.+ +|....+++|++|++++|. ++.+|... .+|++|++++|.++.+| .++
T Consensus 123 -l~~l~~-----~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~~~-~~L~~L~L~~n~l~~l~-~~~ 192 (454)
T 1jl5_A 123 -LKALSD-----LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPDLP-PSLEFIAAGNNQLEELP-ELQ 192 (454)
T ss_dssp -CSCCCS-----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSSCC-CCT
T ss_pred -cCcccC-----CCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCCCc-ccccEEECcCCcCCcCc-ccc
Confidence 776542 23789999999998665 7854489999999999975 55577654 49999999999999988 689
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEE
Q 044933 167 CLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIY 246 (570)
Q Consensus 167 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~ 246 (570)
.+++|++|++++|.+.+ +|.. .++|++|++++|.+. .+|. ++.+++|+.|++++|.++.+|.. +++|+.|+
T Consensus 193 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~ 263 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALN 263 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEE
T ss_pred CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEE
Confidence 99999999999998665 5543 358999999998765 6774 88999999999999999988763 47899999
Q ss_pred eccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCc
Q 044933 247 FGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQS 326 (570)
Q Consensus 247 l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~ 326 (570)
+++|.+.. ++. .+++|+.|++++|.++++|.. .++|+.|++++|.++.++.. .++|++|++++|+ ++.
T Consensus 264 l~~N~l~~--l~~---~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~-l~~ 331 (454)
T 1jl5_A 264 VRDNYLTD--LPE---LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNK-LIE 331 (454)
T ss_dssp CCSSCCSC--CCC---CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSC-CSC
T ss_pred CCCCcccc--cCc---ccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCc-ccc
Confidence 99998443 222 247899999999999887642 37899999999998877632 2589999999976 445
Q ss_pred CCCCCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhh--hhhHHHHH-------------HHHHH
Q 044933 327 LPKLPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRG--IVKGALQK-------------IQLLA 391 (570)
Q Consensus 327 lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~--~~~~~l~~-------------l~~L~ 391 (570)
+|..+++|+.|++++| .++.++. .+++|+.|++++| .+.+ .+|..+.. +++|+
T Consensus 332 lp~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N------~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 332 LPALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN------PLREFPDIPESVEDLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp CCCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS------CCSSCCCCCTTCCEEECCC-------------
T ss_pred ccccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCC------CCCcCCCChHHHHhhhhcccccccccccCcCC
Confidence 8888889999999886 4555655 2567999999876 3333 12222222 37889
Q ss_pred HHHHHHhhhc
Q 044933 392 TARLREAREK 401 (570)
Q Consensus 392 ~l~l~~n~~~ 401 (570)
.+++++|+++
T Consensus 400 ~L~ls~N~l~ 409 (454)
T 1jl5_A 400 QLHVETNPLR 409 (454)
T ss_dssp ----------
T ss_pred EEECCCCcCC
Confidence 9999999876
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.4e-32 Score=286.58 Aligned_cols=337 Identities=14% Similarity=0.136 Sum_probs=250.3
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCC-CCCC-Cc-CCCCcEEEECCCCChhhc-cccccCccC
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLK-LLPS-NI-HPEKLVLLEMPHSNIEQL-FDSVQDYGK 76 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~-~lp~-~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~ 76 (570)
++||.|++++|. .....|..+.. ++|++|++++|.+. .+|. .+ .+++|++|+|++|+++.+ |..++.+++
T Consensus 30 ~~l~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNS-----IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSC-----CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCc-----cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 578999997654 23344677777 99999999999886 5544 34 789999999999999876 678899999
Q ss_pred CcEEccCcccCCCCC-CCC-cccccCCCCcEEEecCCCCCCcCCCc-c-CCCCCCEEeeeCCCCCCCCCCCCC----CCc
Q 044933 77 LNQIITAAFNFFSKI-PTP-SLTQHLNNLVILNLSGCKNLQSLPAR-I-HLKLLKELDLSGCSKLKRLPEISP----GNI 148 (570)
Q Consensus 77 L~~L~Ls~~~~l~~~-~~~-~~~~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~Ls~~~~~~~~p~~~~----~~L 148 (570)
|++|++++|. +++. +.. .+ ..+++|++|+|++|.+.+..|.. + .+++|++|++++|......+.... .+|
T Consensus 105 L~~L~L~~n~-l~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 105 LEVLTLTQCN-LDGAVLSGNFF-KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp CCEEECTTSC-CBTHHHHSSTT-TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred CCEEeCCCCC-CCccccCcccc-cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 9999999976 6652 222 35 88999999999999988877775 4 899999999999876555444322 688
Q ss_pred cEEEecCcCCCcCChh---------ccCCCCCCEEeccCCCCCCcCCcccCCC---CCCCEEEEcCCCCCCCc-------
Q 044933 149 TTMHLDGTALEELPSS---------IECLSKLSHLGLADCKSLKSLPSGLCKL---KSLDVLIIDGCSNLQRL------- 209 (570)
Q Consensus 149 ~~L~L~~~~i~~lp~~---------~~~l~~L~~L~L~~~~~~~~lp~~l~~l---~~L~~L~L~~~~~~~~~------- 209 (570)
+.|++++|.+..++.. +..+++|++|++++|.+.+..|..+..+ ++|+.|++++|...+..
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 9999999998887643 3356789999999999887777655443 77888888877544321
Q ss_pred ---chhhc--CCCcCceeccccccCcc-CCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-Cc
Q 044933 210 ---PEELG--NLEALDILHAIGTSITE-VPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PE 282 (570)
Q Consensus 210 ---p~~l~--~l~~L~~L~l~~n~i~~-l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~ 282 (570)
+..+. ..++|+.|++++|.+.. .|..+..+++|+.|++++|. +....+..+.++++|++|++++|.++++ |.
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 11111 23578888888888874 45567788888888888887 4455566677888888888888888775 66
Q ss_pred ccCCCCCccEEEccCCccccc-CccccCCCCcCEEcccCccccCcCCC----CCcccceecccccccCCc
Q 044933 283 SLGLLSSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCERLQSLPK----LPCNLLSLDAHHCTALES 347 (570)
Q Consensus 283 ~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~~l~~lp~----~~~~L~~L~l~~c~~l~~ 347 (570)
.+..+++|++|+|++|.++.+ |..+..+++|++|+|++|+... +|. ..++|+.|++++++....
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccC
Confidence 778888888888888888866 6677888888888888865443 432 346788888887655433
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=8.9e-32 Score=286.43 Aligned_cols=341 Identities=20% Similarity=0.284 Sum_probs=248.4
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
++|+.|+++++.++.+|....+++|++|+|++|.++.++. +..+++|++|++++|. +++++. + ..+++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~-~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP--L-ANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--G-TTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh--h-cCCCCCCEEECC
Confidence 6788888888888888865578888888888888887766 7788888888888865 666654 5 778888888888
Q ss_pred CCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCC-CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcc
Q 044933 110 GCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISP-GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSG 188 (570)
Q Consensus 110 ~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 188 (570)
+|.+.+ ++....+++|++|++++|. +..++.+.. ++|++|+++ +.+..++. +..+++|+.|++++|.+.. ++ .
T Consensus 121 ~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~ 194 (466)
T 1o6v_A 121 NNQITD-IDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD-IS-V 194 (466)
T ss_dssp SSCCCC-CGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC-CG-G
T ss_pred CCCCCC-ChHHcCCCCCCEEECCCCc-cCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC-Ch-h
Confidence 887544 3443478888888888875 334444333 688888886 45555554 7788888888888887544 33 3
Q ss_pred cCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCC
Q 044933 189 LCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLR 268 (570)
Q Consensus 189 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 268 (570)
+..+++|++|++++|.+.+..| ++.+++|+.|++++|.++.++ .+..+++|+.|++++|.+... .+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL-AP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccc-hh--hhcCCCCC
Confidence 7778888888888887666544 667888888888888888764 477888888888888874332 22 67788888
Q ss_pred eeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCC-CCCcccceecccccccCCc
Q 044933 269 DLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP-KLPCNLLSLDAHHCTALES 347 (570)
Q Consensus 269 ~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp-~~~~~L~~L~l~~c~~l~~ 347 (570)
.|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+..+..| ...++|+.|++++|. +..
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~ 345 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSD 345 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCC
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCC
Confidence 88888888888765 7788888888888888887764 7788888888888876544333 235678888888763 344
Q ss_pred CCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 044933 348 LPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 348 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
++. ...+++|+.|++++| .+.+..| +..++.|+.+++++|+++
T Consensus 346 ~~~---l~~l~~L~~L~l~~n------~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 346 VSS---LANLTNINWLSAGHN------QISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CGG---GTTCTTCCEEECCSS------CCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred chh---hccCCCCCEEeCCCC------ccCccch--hhcCCCCCEEeccCCccc
Confidence 332 235677888888776 5555555 566677777777777665
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=6.7e-32 Score=293.42 Aligned_cols=384 Identities=17% Similarity=0.179 Sum_probs=285.9
Q ss_pred CCCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCC-c-CCCCcEEEECCCCChhhc--cccccCcc
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHSNIEQL--FDSVQDYG 75 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~l~~l--~~~~~~l~ 75 (570)
|++||+|++++|. .....|+.+.. ++|++|++++|.+..+|.. + .+++|++|++++|.++.+ +..++.++
T Consensus 49 l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECCCCC-----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 5789999998654 33344567777 9999999999999999876 4 899999999999999954 67899999
Q ss_pred CCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCC---CCCccEE
Q 044933 76 KLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEIS---PGNITTM 151 (570)
Q Consensus 76 ~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~---~~~L~~L 151 (570)
+|++|++++|..++.++...+ ..+++|++|++++|.+.+..|..+ .+++|++|++++|.. ..+|... .++|++|
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYL 201 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEE
T ss_pred CccEEECCCCccccccCHhhh-hcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhcccccEE
Confidence 999999999876777776677 899999999999999888888776 666666666666542 2222211 1456666
Q ss_pred EecCcCCCcCC--------------------------------hhccCCCCCCEEeccCCCCCCc--C------------
Q 044933 152 HLDGTALEELP--------------------------------SSIECLSKLSHLGLADCKSLKS--L------------ 185 (570)
Q Consensus 152 ~L~~~~i~~lp--------------------------------~~~~~l~~L~~L~L~~~~~~~~--l------------ 185 (570)
++++|.+++++ ..+..+++|+.|++++|...+. +
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 66665555431 1223445555555555543221 0
Q ss_pred ---------------------CcccCCCCCCCEEEEcCCCCCCCcchhh-cCCCcCceeccccccCcc-CC---chhccC
Q 044933 186 ---------------------PSGLCKLKSLDVLIIDGCSNLQRLPEEL-GNLEALDILHAIGTSITE-VP---PSIVRL 239 (570)
Q Consensus 186 ---------------------p~~l~~l~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~l~~n~i~~-l~---~~l~~l 239 (570)
+..+...++|+.|++++|.+ +.+|..+ +.+++|++|++++|.+.. +| ..+..+
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 00011235789999999875 4677665 579999999999999884 33 236788
Q ss_pred CCCcEEEeccCCCCCCcc-ccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcc
Q 044933 240 KRVRGIYFGRNKGLSLPI-TFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFI 318 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 318 (570)
++|+.|++++|.+..... ...+..+++|++|++++|+++.+|..+..+++|++|++++|.++.+|..+ .++|++|++
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~L 438 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDV 438 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEEC
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh--cCCceEEEC
Confidence 999999999998543321 24478899999999999999999999999999999999999999888655 368999999
Q ss_pred cCccccCcCCCCCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHh
Q 044933 319 RYCERLQSLPKLPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREA 398 (570)
Q Consensus 319 s~~~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n 398 (570)
++|+. +.++...++|+.|++++| .++.++.. ..+++|+.|++++| .++++.+..+..++.|+.+++++|
T Consensus 439 s~N~l-~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 439 SNNNL-DSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN------QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CSSCC-SCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS------CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred CCCCh-hhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC------ccCCcCHHHHhcCcccCEEEecCC
Confidence 99754 445556778999999986 45566653 35678888888876 677777777888888888888888
Q ss_pred hhcCCCC
Q 044933 399 REKISYP 405 (570)
Q Consensus 399 ~~~~~~~ 405 (570)
++.+..+
T Consensus 508 ~~~~~~~ 514 (549)
T 2z81_A 508 PWDCSCP 514 (549)
T ss_dssp CBCCCHH
T ss_pred CccCCCc
Confidence 8765443
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=5.3e-31 Score=281.36 Aligned_cols=301 Identities=20% Similarity=0.186 Sum_probs=258.5
Q ss_pred cccccCCCCCCCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhc-cccccCccCCcEEccCcccCCCCCCCCcc
Q 044933 20 KMSYFQGPGFTEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQIITAAFNFFSKIPTPSL 96 (570)
Q Consensus 20 ~~~lp~~~~~~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~ 96 (570)
...+|.++. ++++.|++++|.++.++. .| .+++|++|+|++|.++.+ |..+..+++|++|+|++|. ++.++...|
T Consensus 23 l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 23 FVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp CSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred cCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 345666543 789999999999998865 44 889999999999999987 6789999999999999976 888887777
Q ss_pred cccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCChh-ccCCCCCC
Q 044933 97 TQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPSS-IECLSKLS 172 (570)
Q Consensus 97 ~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~~-~~~l~~L~ 172 (570)
..+++|++|+|++|.+.+..|..+ .+++|++|++++|......+..+. ++|++|++++|.++.+|.. +..+++|+
T Consensus 101 -~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 101 -TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp -TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred -cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 889999999999999888777777 899999999999875544443333 7999999999999998864 88999999
Q ss_pred EEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCC
Q 044933 173 HLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 173 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~ 251 (570)
.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|++++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 99999999888888889999999999999999988888877777799999999999998885 67889999999999998
Q ss_pred CCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcccccCc-cccCCCCcCEEcccCcccc
Q 044933 252 GLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIPE-SIIQLSNLERLFIRYCERL 324 (570)
Q Consensus 252 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~~l 324 (570)
+....+..+..+++|+.|+|++|.++++ |.++..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+..
T Consensus 260 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 260 -ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp -CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred -CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4455566688999999999999999985 7889999999999999999998875 4678899999999998643
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=6.1e-31 Score=268.87 Aligned_cols=298 Identities=21% Similarity=0.245 Sum_probs=237.3
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
++|+.|+++++.+..+|....+++|++|++++|+++.++. +..+++|++|++++|. +++++ ++ ..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~--~~-~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS--AL-QNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG--GG-TTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch--HH-cCCCcCCEEECc
Confidence 7889999999988888875578899999999998888876 8888999999998875 77654 45 888999999999
Q ss_pred CCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCC-CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcc
Q 044933 110 GCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISP-GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSG 188 (570)
Q Consensus 110 ~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 188 (570)
+|.+.+ ++....+++|++|++++|.....++.+.. ++|++|++++|.+..++. +..+++|+.|++++|.+.+. +.
T Consensus 119 ~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~- 194 (347)
T 4fmz_A 119 EDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI-SP- 194 (347)
T ss_dssp TSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC-GG-
T ss_pred CCcccC-chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccc-cc-
Confidence 887554 44444888999999999877777665444 789999999998888776 78888999999998876543 33
Q ss_pred cCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCC
Q 044933 189 LCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLR 268 (570)
Q Consensus 189 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 268 (570)
+..+++|+.|++++|......+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+... ..+..+++|+
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~ 268 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLK 268 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCC
T ss_pred ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcC
Confidence 7788899999998887665444 7788889999999998888777 88889999999999885442 3577888999
Q ss_pred eeecccCCCCCcCcccCCCCCccEEEccCCccccc-CccccCCCCcCEEcccCccccCcCC-CCCcccceecccccc
Q 044933 269 DLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCERLQSLP-KLPCNLLSLDAHHCT 343 (570)
Q Consensus 269 ~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~~l~~lp-~~~~~L~~L~l~~c~ 343 (570)
.|++++|.+++++ .+..+++|+.|++++|.++.. |..+..+++|++|++++|+.....| ...++|+.|++++|.
T Consensus 269 ~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 9999999888874 577888999999999988844 4667888999999999987554444 345788888888764
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=285.76 Aligned_cols=327 Identities=17% Similarity=0.151 Sum_probs=225.9
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCC-CCCc-CCCCcEEEECCCCChhhccccccCccCCc
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLL-PSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLN 78 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~ 78 (570)
++|+.|++++|.. ....|..+.. ++|++|++++|.++.+ |..+ .+++|++|+|++|+++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYI-----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCC-----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCcc-----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 3567777765431 1222334444 6677777777776665 3334 566777777777777666655 666777
Q ss_pred EEccCcccCCCCCCCC-cccccCCCCcEEEecCCCCCCcCCCccCCCCC--CEEeeeCCCC--CCCCCCCC---------
Q 044933 79 QIITAAFNFFSKIPTP-SLTQHLNNLVILNLSGCKNLQSLPARIHLKLL--KELDLSGCSK--LKRLPEIS--------- 144 (570)
Q Consensus 79 ~L~Ls~~~~l~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L--~~L~Ls~~~~--~~~~p~~~--------- 144 (570)
+|++++|. +++++.+ .+ +.+++|++|++++|.+.+. ....+++| ++|++++|.. ....|...
T Consensus 94 ~L~L~~N~-l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 94 HLDLSFNA-FDALPICKEF-GNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp EEECCSSC-CSSCCCCGGG-GGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred EEeccCCc-cccccchhhh-ccCCcceEEEecCcccchh--hccccccceeeEEEeecccccccccccccccccccceEE
Confidence 77777654 5554433 44 6666777777666665431 11144444 5555555543 11111100
Q ss_pred ----------------------------------------------------------------------------CCCc
Q 044933 145 ----------------------------------------------------------------------------PGNI 148 (570)
Q Consensus 145 ----------------------------------------------------------------------------~~~L 148 (570)
.++|
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 0167
Q ss_pred cEEEecCcCCC-cCChhc-----cCCCCCCEEeccCCCCCCcCCc-------------------------c-cCCCCCCC
Q 044933 149 TTMHLDGTALE-ELPSSI-----ECLSKLSHLGLADCKSLKSLPS-------------------------G-LCKLKSLD 196 (570)
Q Consensus 149 ~~L~L~~~~i~-~lp~~~-----~~l~~L~~L~L~~~~~~~~lp~-------------------------~-l~~l~~L~ 196 (570)
++|++++|.++ .+|..+ +.+++|+.+++++|.+ .+|. . ...+++|+
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~ 327 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence 77777777777 677766 5666555555555544 2220 1 16789999
Q ss_pred EEEEcCCCCCCCcchhhcCCCcCceeccccccCcc---CCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecc
Q 044933 197 VLIIDGCSNLQRLPEELGNLEALDILHAIGTSITE---VPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLN 273 (570)
Q Consensus 197 ~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~---l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls 273 (570)
+|++++|.+.+..|..++.+++|+.|++++|.+.. +|..+..+++|+.|++++|.+........+..+++|+.|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 99999999998899999999999999999999985 456789999999999999994432333457889999999999
Q ss_pred cCCCCC-cCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCCC----Ccccceeccccccc
Q 044933 274 DCGIME-LPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKL----PCNLLSLDAHHCTA 344 (570)
Q Consensus 274 ~n~l~~-ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~----~~~L~~L~l~~c~~ 344 (570)
+|.+++ +|..+. ++|+.|+|++|.++.+|..+..+++|++|++++|+. +.+|.. .++|+.|++++++.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC-CccCHHHhccCCcccEEECcCCCC
Confidence 999976 566554 799999999999999999888999999999999864 467753 46789999988654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1e-30 Score=278.17 Aligned_cols=336 Identities=20% Similarity=0.275 Sum_probs=277.0
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEE
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQI 80 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 80 (570)
++||.|++.++. ...+| ++.. ++|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|++|
T Consensus 46 ~~l~~L~l~~~~------i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLG------IKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSC------CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCC------CccCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 478999996532 22344 4666 9999999999999999884489999999999999998877 9999999999
Q ss_pred ccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCC-CCccEEEecCcCCC
Q 044933 81 ITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISP-GNITTMHLDGTALE 159 (570)
Q Consensus 81 ~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~-~~L~~L~L~~~~i~ 159 (570)
++++|. +++++. + ..+++|++|++++|.+.+ ++....+++|++|++++ . +..++.+.. ++|++|++++|.++
T Consensus 118 ~L~~n~-l~~~~~--~-~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQ-ITDIDP--L-KNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGN-Q-VTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSC-CCCCGG--G-TTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEE-S-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCC-CCCChH--H-cCCCCCCEEECCCCccCC-ChhhccCCcccEeecCC-c-ccCchhhccCCCCCEEECcCCcCC
Confidence 999976 777763 5 899999999999998554 55544899999999975 2 333333332 79999999999999
Q ss_pred cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccC
Q 044933 160 ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRL 239 (570)
Q Consensus 160 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l 239 (570)
.++. +..+++|++|++++|.+.+..| +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+..+++ +..+
T Consensus 191 ~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l 264 (466)
T 1o6v_A 191 DISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LSGL 264 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred CChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hhcC
Confidence 8864 8899999999999998776655 6789999999999997655 3 467889999999999999998776 8899
Q ss_pred CCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEccc
Q 044933 240 KRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIR 319 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 319 (570)
++|+.|++++|.+.... + +..+++|+.|++++|.+++++. +..+++|+.|+|++|.++.++. +..+++|+.|+++
T Consensus 265 ~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 265 TKLTELKLGANQISNIS-P--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp TTCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECC
T ss_pred CCCCEEECCCCccCccc-c--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECC
Confidence 99999999999854332 2 7889999999999999999765 7889999999999999998775 7899999999999
Q ss_pred CccccCcCCC--CCcccceecccccccCCcCCCCCCCCCccccceeeccCC
Q 044933 320 YCERLQSLPK--LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDN 368 (570)
Q Consensus 320 ~~~~l~~lp~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~ 368 (570)
+|+. ..++. ..++|+.|++++|......+ ...+++|+.|++.+|
T Consensus 340 ~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 340 NNKV-SDVSSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQ 385 (466)
T ss_dssp SSCC-CCCGGGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCCE
T ss_pred CCcc-CCchhhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccCC
Confidence 9864 33443 35789999999986544333 346788999999877
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=7.4e-31 Score=286.04 Aligned_cols=327 Identities=16% Similarity=0.142 Sum_probs=216.8
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhccccccCccCCc
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLN 78 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~ 78 (570)
++|+.|++++|. .....|..+.. ++|++|++++|.++.+++ .| .+++|++|+|++|+++.+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~-----i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNS-----ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSC-----CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEEECCCCC-----ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 356666665433 11222345555 667777777776666533 33 566677777777776666655 566777
Q ss_pred EEccCcccCCCCCCCC-cccccCCCCcEEEecCCCCCCcCCCccCCCCC--CEEeeeCCCC--CCCCCCCC---------
Q 044933 79 QIITAAFNFFSKIPTP-SLTQHLNNLVILNLSGCKNLQSLPARIHLKLL--KELDLSGCSK--LKRLPEIS--------- 144 (570)
Q Consensus 79 ~L~Ls~~~~l~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L--~~L~Ls~~~~--~~~~p~~~--------- 144 (570)
+|++++|. +++++.+ .+ +++++|++|++++|.+.+.. ...+++| ++|++++|.. ....|...
T Consensus 125 ~L~Ls~N~-l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 125 HLDLSFND-FDVLPVCKEF-GNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp EEECCSSC-CSBCCCCGGG-GGCTTCCEEEEECSBCCTTT--TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred EEECCCCC-ccccCchHhh-cccCcccEEecCCCccccCc--hhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 77777654 6665543 44 66677777777766654321 1133333 6666666544 11111100
Q ss_pred --------------------------------------------------------------------------CCCccE
Q 044933 145 --------------------------------------------------------------------------PGNITT 150 (570)
Q Consensus 145 --------------------------------------------------------------------------~~~L~~ 150 (570)
..+|++
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 014555
Q ss_pred EEecCcCCC-cCChhc-----cCC--------------------------CCCCEEeccCCCCCCcCCcccCCCCCCCEE
Q 044933 151 MHLDGTALE-ELPSSI-----ECL--------------------------SKLSHLGLADCKSLKSLPSGLCKLKSLDVL 198 (570)
Q Consensus 151 L~L~~~~i~-~lp~~~-----~~l--------------------------~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 198 (570)
|++++|.++ .+|..+ ..+ .+|+.|++++|.+.... ....+++|++|
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 358 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEE
Confidence 555555554 444433 111 22444444444332111 01678999999
Q ss_pred EEcCCCCCCCcchhhcCCCcCceeccccccCccCC---chhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccC
Q 044933 199 IIDGCSNLQRLPEELGNLEALDILHAIGTSITEVP---PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDC 275 (570)
Q Consensus 199 ~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n 275 (570)
++++|.+.+..|..++.+++|+.|++++|.++.++ ..+..+++|+.|++++|.+........+..+++|+.|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 99999998888999999999999999999999765 467899999999999999544344455788999999999999
Q ss_pred CCCC-cCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCCC----Ccccceeccccccc
Q 044933 276 GIME-LPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKL----PCNLLSLDAHHCTA 344 (570)
Q Consensus 276 ~l~~-ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~----~~~L~~L~l~~c~~ 344 (570)
.+++ +|..+. ++|+.|+|++|.++.+|..+..+++|++|+|++|+.. .+|.. .++|+.|++++++-
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 9976 555443 7999999999999999988889999999999997644 66653 46788899888653
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.1e-30 Score=264.90 Aligned_cols=300 Identities=20% Similarity=0.263 Sum_probs=223.1
Q ss_pred CCCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcE
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQ 79 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~ 79 (570)
+++||.|++.++. ...+| ++.. ++|++|++++|.++.+|....+++|++|++++|.++.++ .+..+++|++
T Consensus 43 l~~L~~L~l~~~~------i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEK------VASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSC------CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEeCCc------cccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3577888886532 12333 3555 888888888888888877447888888888888888774 5778888888
Q ss_pred EccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCC
Q 044933 80 IITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALE 159 (570)
Q Consensus 80 L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~ 159 (570)
|++++|. +++++. + ..+++|++|++++|.....++....+++|++|++++|......+....++|++|++++|.++
T Consensus 115 L~l~~n~-i~~~~~--~-~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDN-ISDISP--L-ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSC-CCCCGG--G-TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC
T ss_pred EECcCCc-ccCchh--h-ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc
Confidence 8888865 666653 4 77888888888888777766665578888888888876433322222268888888888888
Q ss_pred cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccC
Q 044933 160 ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRL 239 (570)
Q Consensus 160 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l 239 (570)
.++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|++|++++|.++.++ .+..+
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l 264 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDL 264 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hHhcC
Confidence 8776 7778888888888887655443 6778888888888877655433 778888888888888888763 57788
Q ss_pred CCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcc
Q 044933 240 KRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFI 318 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 318 (570)
++|+.|++++|.+... ..+..+++|+.|++++|.+++ .+..+..+++|+.|+|++|.++.++. +..+++|++|++
T Consensus 265 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeeh
Confidence 8888888888874443 346778888888888888877 45677788888888888888887765 777888888888
Q ss_pred cCcc
Q 044933 319 RYCE 322 (570)
Q Consensus 319 s~~~ 322 (570)
++|+
T Consensus 341 ~~N~ 344 (347)
T 4fmz_A 341 ANQV 344 (347)
T ss_dssp SCC-
T ss_pred hhhc
Confidence 8875
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4e-30 Score=267.23 Aligned_cols=298 Identities=16% Similarity=0.183 Sum_probs=155.4
Q ss_pred CCccEEEecCCCCCCCCCCc--CCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEE
Q 044933 30 TEVRYLHWHGYPLKLLPSNI--HPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVIL 106 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 106 (570)
+++++|+++++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|++++|. ++++++..+ +.+++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHh-cCCCCCCEE
Confidence 56666666666666666653 56666666666666666543 56666666666666654 666555555 666666666
Q ss_pred EecCCCCCCcCCCc-c-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCC
Q 044933 107 NLSGCKNLQSLPAR-I-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSL 182 (570)
Q Consensus 107 ~L~~~~~~~~~p~~-~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 182 (570)
+|++|.+. .+|.. + .+++|++|++++|......+..+. ++|++|++++|.++.++ ++.+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence 66666544 33332 2 566666666666543332222221 45555555555555443 344555555555555432
Q ss_pred CcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccc
Q 044933 183 KSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVD 262 (570)
Q Consensus 183 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 262 (570)
+ +...++|+.|++++|.+... |. ...++|+.|++++|.++.. ..+..+++|+.|++++|. +....+..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE-LEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCc-CCCcChhHcc
Confidence 2 12233455555555443222 21 1124455555555555443 234445555555555554 2333334444
Q ss_pred cCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCCCCcccceeccccc
Q 044933 263 GLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHC 342 (570)
Q Consensus 263 ~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~~L~l~~c 342 (570)
.+++|+.|++++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|++|++++|+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-------------------- 329 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-------------------- 329 (390)
T ss_dssp TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC--------------------
T ss_pred ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc--------------------
Confidence 455555555555555554444444555555555555555554444444555555555443
Q ss_pred ccCCcCCCCCCCCCccccceeeccCC
Q 044933 343 TALESLPGLFPSSDESYLRTLYLSDN 368 (570)
Q Consensus 343 ~~l~~~~~~~~~~~~~~L~~L~l~~~ 368 (570)
+..++ ...+++|+.|++++|
T Consensus 330 --i~~~~----~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 330 --IVTLK----LSTHHTLKNLTLSHN 349 (390)
T ss_dssp --CCCCC----CCTTCCCSEEECCSS
T ss_pred --cceeC----chhhccCCEEEcCCC
Confidence 22222 124567888888877
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.2e-31 Score=281.71 Aligned_cols=344 Identities=22% Similarity=0.201 Sum_probs=207.8
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCC-CCCCCc-CCCC-------------cEEEECCCCChh
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLK-LLPSNI-HPEK-------------LVLLEMPHSNIE 65 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~-~lp~~~-~~~~-------------L~~L~L~~n~l~ 65 (570)
+.||.|.++++. -..+|+.+.. ++|++|++++|.+. .+|..+ .+.+ +++|++++|+++
T Consensus 11 ~~L~~L~l~~n~------l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 11 TFLQEPLRHSSN------LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccchhhhcccCc------hhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 356666665432 2566777766 77777777777665 566655 4443 377777777777
Q ss_pred hccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCC
Q 044933 66 QLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISP 145 (570)
Q Consensus 66 ~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~ 145 (570)
.+|.. .++|++|++++|. +++++ ..+++|++|++++|.+.+ +|.. .++|++|++++|. ++.+|.+..
T Consensus 85 ~lp~~---~~~L~~L~l~~n~-l~~lp-----~~~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~-l~~lp~~~~ 151 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCNS-LTELP-----ELPQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQ-LEKLPELQN 151 (454)
T ss_dssp CCCSC---CTTCSEEECCSSC-CSSCC-----CCCTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSC-CSSCCCCTT
T ss_pred cCCCC---cCCCCEEEccCCc-CCccc-----cccCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCC-CCCCcccCC
Confidence 66652 3567777777654 66654 224677777777766443 3321 2577777777764 334664333
Q ss_pred -CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecc
Q 044933 146 -GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHA 224 (570)
Q Consensus 146 -~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 224 (570)
++|++|++++|.++++|..+ .+|++|++++|.+.+ +| .+.++++|++|++++|.+.+ +|.. .++|+.|++
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 67777777777777776543 477777777776554 55 46777777777777776543 3332 246777777
Q ss_pred ccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccC
Q 044933 225 IGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIP 304 (570)
Q Consensus 225 ~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp 304 (570)
++|.+..+|. +..+++|+.|++++|++.. ++. .+++|+.|++++|.++++|.. +++|+.|++++|.++.+|
T Consensus 223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 223 GNNILEELPE-LQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp CSSCCSSCCC-CTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES
T ss_pred cCCcCCcccc-cCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc
Confidence 7777777764 6777777777777777432 121 236777777777777776653 367777888877777665
Q ss_pred ccccCCCCcCEEcccCccccCcCCCCCcccceecccccccCCcCCCCCCCCCccccceeeccCCcccchhhhhhhhhHHH
Q 044933 305 ESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGAL 384 (570)
Q Consensus 305 ~~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l 384 (570)
.. .++|++|++++|+ ++.++..+.+|+.|+++++. +..++.. +++|+.|++++| .++.+..
T Consensus 294 ~~---~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~-l~~lp~~-----~~~L~~L~L~~N------~l~~lp~--- 354 (454)
T 1jl5_A 294 EL---PPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNK-LIELPAL-----PPRLERLIASFN------HLAEVPE--- 354 (454)
T ss_dssp CC---CTTCCEEECCSSC-CSEECCCCTTCCEEECCSSC-CSCCCCC-----CTTCCEEECCSS------CCSCCCC---
T ss_pred Cc---CCcCCEEECcCCc-CCcccCCcCcCCEEECCCCc-ccccccc-----CCcCCEEECCCC------ccccccc---
Confidence 32 2577888888764 44466666788888888754 4445442 466888888776 4443332
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 044933 385 QKIQLLATARLREAREKI 402 (570)
Q Consensus 385 ~~l~~L~~l~l~~n~~~~ 402 (570)
.++.|+.+++++|++++
T Consensus 355 -~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -CCTTCCEEECCSSCCSS
T ss_pred -hhhhccEEECCCCCCCc
Confidence 25677788888888764
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=270.40 Aligned_cols=289 Identities=19% Similarity=0.183 Sum_probs=197.9
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhcc-ccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLF-DSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
..-+.++.++..++.+|..+ ++++++|+|++|+++.++ ..+..+++|++|+|++|. ++++.+.+| ..+++|++|+|
T Consensus 11 ~~~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L 87 (477)
T 2id5_A 11 AQDRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAF-NNLFNLRTLGL 87 (477)
T ss_dssp TTTTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEEC
T ss_pred CCCCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhh-hCCccCCEEEC
Confidence 34467888889999999876 578999999999999874 578899999999999975 888877777 88999999999
Q ss_pred cCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCC-hhccCCCCCCEEeccCCCCCCc
Q 044933 109 SGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELP-SSIECLSKLSHLGLADCKSLKS 184 (570)
Q Consensus 109 ~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~ 184 (570)
++|.+....+..+ .+++|++|+|++|......+..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 9988655444444 788888888888765444443322 56777777777666553 3466666777777776665554
Q ss_pred CCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cCCchhccCCCCcEEEeccCCCCCCcccccccc
Q 044933 185 LPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDG 263 (570)
Q Consensus 185 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 263 (570)
.+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|... .++.......+|+.|++++|.+ ....+..+..
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~ 246 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRH 246 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcC
Confidence 4455666667777777766665555556666666777776665543 5555555555666666666663 2333334566
Q ss_pred CCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCccccc-CccccCCCCcCEEcccCcc
Q 044933 264 LQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 264 l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~ 322 (570)
+++|+.|+|++|.++++ +..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 66666666666666664 34566666666666666666644 4556666666666666653
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.6e-29 Score=264.10 Aligned_cols=291 Identities=16% Similarity=0.149 Sum_probs=205.9
Q ss_pred CCCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcE
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQ 79 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~ 79 (570)
+++|+.|+++++.. ..+| ++.. ++|++|++++|.++.+| ...+++|++|++++|+++.++ ++.+++|++
T Consensus 41 l~~L~~L~Ls~n~l------~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSI------TDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCC------CCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCc------ccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 36788888876432 1234 4555 88888888888888876 337788888888888888774 778888888
Q ss_pred EccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCC
Q 044933 80 IITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALE 159 (570)
Q Consensus 80 L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~ 159 (570)
|++++|. +++++ + +.+++|++|++++|.+.+ ++ ...+++|++|++++|..++.++....++|++|++++|.++
T Consensus 111 L~L~~N~-l~~l~---~-~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNK-LTKLD---V-SQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSC-CSCCC---C-TTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC
T ss_pred EECCCCc-CCeec---C-CCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc
Confidence 8888865 77664 4 778888888888887665 33 2378888888888887777665444478888888888888
Q ss_pred cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccC
Q 044933 160 ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRL 239 (570)
Q Consensus 160 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l 239 (570)
.+| ++.+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ +| ++.+++|+.|++++|.++.+| +..+
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l 253 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTL 253 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred eec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHC
Confidence 887 77888888888888876654 37778888888888887666 55 777888888888888888766 3455
Q ss_pred CCCcEEEeccCCCCC---------CccccccccCCCCCeeecccCCCCC-cCc--------ccCCCCCccEEEccCCccc
Q 044933 240 KRVRGIYFGRNKGLS---------LPITFSVDGLQNLRDLNLNDCGIME-LPE--------SLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~---------~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~--------~l~~l~~L~~L~L~~n~l~ 301 (570)
++|+.|++++|.+.. +.++ ++.+++|+.|++++|...+ +|. .+..+++|+.|++++|+++
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 666655555544221 1122 3456777777777776443 222 2455567777777777777
Q ss_pred ccCccccCCCCcCEEcccCcc
Q 044933 302 RIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 302 ~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
.++ +..+++|+.|++++|+
T Consensus 332 ~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 332 ELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCC--CTTCTTCSEEECCSSC
T ss_pred ccc--cccCCcCcEEECCCCC
Confidence 663 6667777777777654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-29 Score=277.56 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=141.5
Q ss_pred CCccEEEecCCCCCCCCCCc--CCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEE
Q 044933 30 TEVRYLHWHGYPLKLLPSNI--HPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVIL 106 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 106 (570)
.+++.++++++.+..+|..+ .+++|++|+|++|.++.++. .+..+++|+.|+|++|. ++++++..| +.+++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH-cCCCCCCEE
Confidence 55566666666666666543 45666666666666665543 55566666666666644 555555445 556666666
Q ss_pred EecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCC
Q 044933 107 NLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLK 183 (570)
Q Consensus 107 ~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~ 183 (570)
+|++|.+.+..+..+ .+++|++|+|++|......|..+. ++|++|++++|.++.++ ++.+++|+.|++++|.+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 666665443322222 556666666666543333332222 45555555555555543 3345555555555554322
Q ss_pred cCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCcccccccc
Q 044933 184 SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDG 263 (570)
Q Consensus 184 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 263 (570)
+...++|+.|++++|.+... +..+ .++|+.|++++|.++.. ..+..+++|+.|++++|. +....+..+..
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 276 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE-LEKIMYHPFVK 276 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCEEESGGGTT
T ss_pred -----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCc-cCCCCHHHhcC
Confidence 12234455555555443221 1111 13455555555555442 334455555555555554 33333444455
Q ss_pred CCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCcc
Q 044933 264 LQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 264 l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
+++|+.|+|++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 55555555555555555444444555555555555555555445555555555555543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-29 Score=262.14 Aligned_cols=301 Identities=14% Similarity=0.148 Sum_probs=253.9
Q ss_pred CCCceEEEEecCCcccccccccccCCC-CC-CCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhcc-ccccCcc
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGP-GF-TEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQLF-DSVQDYG 75 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~-~~-~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l~-~~~~~l~ 75 (570)
+++||.|++.++ ....+|..+ .. ++|++|++++|.++.+|. .+ .+++|++|+|++|.++.++ ..++.++
T Consensus 44 l~~l~~l~l~~~------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNS------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESC------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCC------chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 468999999753 334577664 33 899999999999998876 44 8999999999999999885 4689999
Q ss_pred CCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEec
Q 044933 76 KLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLD 154 (570)
Q Consensus 76 ~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~ 154 (570)
+|++|++++|. +++++...| ..+++|++|++++|.+.+..|..+ .+++|++|++++|. ++.++....++|+.|+++
T Consensus 118 ~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVS 194 (390)
T ss_dssp TCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECC
T ss_pred CCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccccccccccceeecc
Confidence 99999999976 888887667 899999999999999877767666 89999999999976 444444444799999999
Q ss_pred CcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-C
Q 044933 155 GTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-P 233 (570)
Q Consensus 155 ~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~ 233 (570)
+|.++.++ ..++|+.|++++|.+... |.. ..++|+.|++++|.+.+. ..++.+++|++|++++|.+..+ |
T Consensus 195 ~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 195 YNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 99988654 456899999999986554 432 358999999999987654 5788999999999999999965 7
Q ss_pred chhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCc
Q 044933 234 PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNL 313 (570)
Q Consensus 234 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 313 (570)
..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.++++|..+..+++|+.|+|++|.++.++ +..+++|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L 341 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 341 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCC
T ss_pred hHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccC
Confidence 789999999999999998543 344567899999999999999999988999999999999999999886 7789999
Q ss_pred CEEcccCccc
Q 044933 314 ERLFIRYCER 323 (570)
Q Consensus 314 ~~L~Ls~~~~ 323 (570)
+.|++++|+.
T Consensus 342 ~~L~l~~N~~ 351 (390)
T 3o6n_A 342 KNLTLSHNDW 351 (390)
T ss_dssp SEEECCSSCE
T ss_pred CEEEcCCCCc
Confidence 9999999863
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.7e-29 Score=264.86 Aligned_cols=336 Identities=18% Similarity=0.164 Sum_probs=177.8
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
++|++|+++++.++.+|....+++|++|++++|+++.++ +..+++|++|++++|. +++++ + +.+++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~---~-~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD---V-TPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC---C-TTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee---c-CCCCcCCEEECC
Confidence 666667777666666664336666666666666666664 5666666666666654 55543 3 556666666666
Q ss_pred CCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCccc
Q 044933 110 GCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGL 189 (570)
Q Consensus 110 ~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l 189 (570)
+|.+.+ +| ...+++|++|++++| .++.++ ++.+++|++|++++|...+.+ .+
T Consensus 115 ~N~l~~-l~-~~~l~~L~~L~l~~N----------------------~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 115 TNKLTK-LD-VSQNPLLTYLNCARN----------------------TLTEID--VSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp SSCCSC-CC-CTTCTTCCEEECTTS----------------------CCSCCC--CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred CCcCCe-ec-CCCCCcCCEEECCCC----------------------ccceec--cccCCcCCEEECCCCCccccc--cc
Confidence 665443 33 225555555555554 444432 444455555555555444433 24
Q ss_pred CCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCe
Q 044933 190 CKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRD 269 (570)
Q Consensus 190 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 269 (570)
..+++|++|++++|.+.+ +| ++.+++|+.|++++|.++.++ +..+++|+.|++++|++.. +| +..+++|+.
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~ 237 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTY 237 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc--cC--ccccCCCCE
Confidence 445555555555544333 22 444455555555555555442 4445555555555555322 11 444555555
Q ss_pred eecccCCCCCcCcccCCCCCccEEEccCCccc-----------ccCccccCCCCcCEEcccCccccCcCCCCCcccceec
Q 044933 270 LNLNDCGIMELPESLGLLSSVTTLHLEGNNFE-----------RIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLD 338 (570)
Q Consensus 270 L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~-----------~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~~L~ 338 (570)
|++++|.++++| ++.+++|+.|++++|.++ .+| +..+++|+.|++++|+.++.+|.....|+.|+
T Consensus 238 L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 238 FDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred EEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 555555555543 223333333333333332 222 34566677777777766666665444455555
Q ss_pred ccccccCCcC-------CCCCCCCCccccceeeccCCcccchhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCeeE
Q 044933 339 AHHCTALESL-------PGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKIQLLATARLREAREKISYPSLRGRG 411 (570)
Q Consensus 339 l~~c~~l~~~-------~~~~~~~~~~~L~~L~l~~~~~L~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~ 411 (570)
+++|+.++.+ .+ .+...+++|+.|++++| .++++ +.|..++++.|.+.|. ....
T Consensus 314 l~~~~~L~~L~L~~N~l~~-l~l~~l~~L~~L~l~~N------~l~~l--------~~L~~L~l~~n~l~g~----~~~~ 374 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTE-LDVSHNTKLKSLSCVNA------HIQDF--------SSVGKIPALNNNFEAE----GQTI 374 (457)
T ss_dssp CTTCTTCCEEECTTCCCSC-CCCTTCTTCSEEECCSS------CCCBC--------TTGGGSSGGGTSEEEE----EEEE
T ss_pred hhhcccCCEEECCCCcccc-cccccCCcCcEEECCCC------CCCCc--------cccccccccCCcEEec----ceee
Confidence 4444433322 11 12346777888888766 44442 3445566677776542 0011
Q ss_pred eecCCCCCcceeecCCCcEEEEEcCCCCC
Q 044933 412 FLPWNKIPKWFSFQSAGSCVTLEMPPDFF 440 (570)
Q Consensus 412 ~~pg~~ip~~f~~~~~~~~i~~~lp~~~~ 440 (570)
.+|. ..-..+.+++.+|+.+.
T Consensus 375 -----~l~~---l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 375 -----TMPK---ETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp -----ECCC---BCCBTTBEEEECCTTCB
T ss_pred -----ecCc---cccccCcEEEEcChhHh
Confidence 1222 23456789999999887
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1e-29 Score=280.66 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=85.8
Q ss_pred CceEEEEecCCccccccccccc-CCCCC-CCccEEEecCCCCCCCCCC-c-CCCCcEEEECCCCChhhccc-cccCccCC
Q 044933 3 NLRILKFYSSMNEENKCKMSYF-QGPGF-TEVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHSNIEQLFD-SVQDYGKL 77 (570)
Q Consensus 3 ~Lr~L~l~~~~~~~~~~~~~lp-~~~~~-~~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~l~~l~~-~~~~l~~L 77 (570)
++|.|++++|. -..+| ..|.. ++|++|++++|.++.+|+. | .+++|++|+|++|+++.++. .+.++++|
T Consensus 53 ~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 56777776543 12333 45555 7777777777777777654 3 67777777777777777764 46777777
Q ss_pred cEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCC-cCCCcc-CCCCCCEEeeeCCCC
Q 044933 78 NQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQ-SLPARI-HLKLLKELDLSGCSK 136 (570)
Q Consensus 78 ~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~Ls~~~~ 136 (570)
++|+|++|+ +++++...| +++++|++|+|++|.+.. ..|..+ .+++|++|++++|..
T Consensus 127 ~~L~Ls~N~-l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 127 QKLVAVETN-LASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEEECTTSC-CCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEECCCCc-CCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 777777765 777766666 777777777777777654 345555 677777777777653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-28 Score=270.54 Aligned_cols=301 Identities=14% Similarity=0.151 Sum_probs=254.1
Q ss_pred CCCceEEEEecCCcccccccccccCCC-CC-CCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhccc-cccCcc
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGP-GF-TEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQLFD-SVQDYG 75 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~-~~-~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l~~-~~~~l~ 75 (570)
+.+++.|++.++ ....+|..+ .. ++|++|++++|.+..+|. .+ .+++|++|+|++|.++.++. .++.++
T Consensus 50 l~~l~~l~l~~~------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNS------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSC------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCC------CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 367888998653 334567654 33 899999999999998876 44 89999999999999998865 578999
Q ss_pred CCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEec
Q 044933 76 KLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLD 154 (570)
Q Consensus 76 ~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~ 154 (570)
+|++|+|++|. +++++...| ..+++|++|+|++|.+.+..|..+ .+++|++|++++|. +..++....++|+.|+++
T Consensus 124 ~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 124 LLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp TCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECC
T ss_pred CCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcc
Confidence 99999999976 888887777 899999999999999888777767 89999999999986 444554445799999999
Q ss_pred CcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-C
Q 044933 155 GTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-P 233 (570)
Q Consensus 155 ~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~ 233 (570)
+|.++.++ ...+|+.|++++|.+... |..+ .++|+.|++++|.+.+ +..++.+++|+.|++++|.+..+ |
T Consensus 201 ~n~l~~l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 201 YNLLSTLA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SSCCSEEE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred cCcccccc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 99988653 456899999999986543 3322 3689999999998776 46788999999999999999955 7
Q ss_pred chhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCc
Q 044933 234 PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNL 313 (570)
Q Consensus 234 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 313 (570)
..+..+++|+.|++++|.+.. ++..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+| +..+++|
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L 347 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 347 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCC
T ss_pred HHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCC
Confidence 789999999999999999544 355567899999999999999999999999999999999999999886 6788999
Q ss_pred CEEcccCccc
Q 044933 314 ERLFIRYCER 323 (570)
Q Consensus 314 ~~L~Ls~~~~ 323 (570)
+.|+|++|+.
T Consensus 348 ~~L~l~~N~~ 357 (597)
T 3oja_B 348 KNLTLSHNDW 357 (597)
T ss_dssp SEEECCSSCE
T ss_pred CEEEeeCCCC
Confidence 9999999874
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.4e-28 Score=246.19 Aligned_cols=260 Identities=19% Similarity=0.298 Sum_probs=143.4
Q ss_pred CccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhcc-ccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 31 EVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLF-DSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 31 ~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
+++.++++++.++.+|..+ +++|++|++++|+++.++ ..+..+++|++|++++|. ++++.+..+ ..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF-SPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS-TTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh-hCcCCCCEEECC
Confidence 4566666666666655544 345555666555555543 245555555555555543 444433344 445555555555
Q ss_pred CCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCC--CcCC
Q 044933 110 GCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSL--KSLP 186 (570)
Q Consensus 110 ~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~--~~lp 186 (570)
+|.+ +.+|....++|++|++++|.++.+|.. +..+++|++|++++|.+. +..|
T Consensus 111 ~n~l------------------------~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 111 KNHL------------------------VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp SSCC------------------------CSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CCcC------------------------CccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 5442 233333334566666666666666543 666777777777776653 2445
Q ss_pred cccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCC-chhccCCCCcEEEeccCCCCCCccccccccCC
Q 044933 187 SGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVP-PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQ 265 (570)
Q Consensus 187 ~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 265 (570)
..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.+..++ ..+..+++|+.|++++|. +....+..+..++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLP 241 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCT
T ss_pred ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCC
Confidence 555555 66666666665433 443332 56666666666666544 355566666666666665 3333344455666
Q ss_pred CCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCc-cccC------CCCcCEEcccCcc
Q 044933 266 NLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPE-SIIQ------LSNLERLFIRYCE 322 (570)
Q Consensus 266 ~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~-~l~~------l~~L~~L~Ls~~~ 322 (570)
+|+.|++++|.++.+|..+..+++|+.|++++|.++.++. .+.. .+.|+.|++++|+
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 6666666666666666666666666666666666665542 2221 2445555555544
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.8e-27 Score=241.41 Aligned_cols=263 Identities=19% Similarity=0.270 Sum_probs=164.1
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
.+++.++++++.++.+|..+ +++|++|+|++|+++.++. .++.+++|++|++++|. ++++.+..+ ..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF-APLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh-cCCCCCCEEEC
Confidence 46777777777777777655 3567777777777766654 46666666666666654 555544455 55666666666
Q ss_pred cCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCC--cC
Q 044933 109 SGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLK--SL 185 (570)
Q Consensus 109 ~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~--~l 185 (570)
++|.+. .+|. ...++|++|++++|.++.++. .+..+++|++|++++|.+.. ..
T Consensus 108 s~n~l~-~l~~-----------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 108 SKNQLK-ELPE-----------------------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CSSCCS-BCCS-----------------------SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CCCcCC-ccCh-----------------------hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 665532 3333 233456666666666666554 36667777777777766532 55
Q ss_pred CcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccccccC
Q 044933 186 PSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGL 264 (570)
Q Consensus 186 p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 264 (570)
+..+.++++|++|++++|.+.. +|..+. ++|++|++++|.++.+ +..+..+++|+.|++++|. +....+..+..+
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 239 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANT 239 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGS
T ss_pred hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCC
Confidence 5566667777777777665443 443332 5677777777777644 4466677777777777776 333334456667
Q ss_pred CCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCcc-cc------CCCCcCEEcccCccc
Q 044933 265 QNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPES-II------QLSNLERLFIRYCER 323 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~-l~------~l~~L~~L~Ls~~~~ 323 (570)
++|+.|++++|.++.+|.++..+++|++|+|++|.++.++.. +. ..+.|+.|++++|+.
T Consensus 240 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 777777777777777777777777777777777777766532 21 235667777777653
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.6e-27 Score=241.81 Aligned_cols=240 Identities=20% Similarity=0.248 Sum_probs=198.4
Q ss_pred CcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEee
Q 044933 53 KLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDL 131 (570)
Q Consensus 53 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~L 131 (570)
+++.++++++.++.+|..+. ++|+.|++++|+ +++++...+ ..+++|++|+|++|.+.+..|..+ .+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 67788888888887776553 578888888765 777776666 777888888888877666556555 5555555555
Q ss_pred eCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCC--Cc
Q 044933 132 SGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQ--RL 209 (570)
Q Consensus 132 s~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~ 209 (570)
++ |.++++|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..
T Consensus 108 s~----------------------n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 108 SK----------------------NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CS----------------------SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CC----------------------CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 54 56777777654 799999999999888777789999999999999998753 66
Q ss_pred chhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCC
Q 044933 210 PEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLS 288 (570)
Q Consensus 210 p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~ 288 (570)
+..+..+++|+.|++++|.++.+|..+. ++|+.|++++|. +....+..+..+++|+.|++++|.++++ +..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 7789999999999999999999988665 899999999999 5555567789999999999999999996 45889999
Q ss_pred CccEEEccCCcccccCccccCCCCcCEEcccCccc
Q 044933 289 SVTTLHLEGNNFERIPESIIQLSNLERLFIRYCER 323 (570)
Q Consensus 289 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~ 323 (570)
+|++|+|++|.++.+|..+..+++|++|++++|+.
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 99999999999999999999999999999999764
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.7e-27 Score=241.85 Aligned_cols=280 Identities=14% Similarity=0.145 Sum_probs=178.5
Q ss_pred CceEEEEecCCcccccccccccCCCCCCCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhc-cccccCccCCcE
Q 044933 3 NLRILKFYSSMNEENKCKMSYFQGPGFTEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQ 79 (570)
Q Consensus 3 ~Lr~L~l~~~~~~~~~~~~~lp~~~~~~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~ 79 (570)
+|+.++++++ ....+|..+. ++|++|++++|.++.++. .+ .+++|++|+|++|+++.+ +..+..+++|++
T Consensus 34 ~l~~l~~~~~------~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDL------GLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSS------CCSSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCC------CccccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 4677777543 2345666553 799999999999998865 44 899999999999999987 678999999999
Q ss_pred EccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCC--CCCCCCC-CCccEEEecC
Q 044933 80 IITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLK--RLPEISP-GNITTMHLDG 155 (570)
Q Consensus 80 L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~--~~p~~~~-~~L~~L~L~~ 155 (570)
|++++|. ++.++... .++|++|++++|.+.+..+..+ .+++|++|++++|.... ..+..+. .+|++|++++
T Consensus 107 L~L~~n~-l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~ 181 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181 (332)
T ss_dssp EECCSSC-CCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCS
T ss_pred EECCCCc-CCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcC
Confidence 9999976 88776532 3899999999998765544445 79999999999876421 2222111 2555555555
Q ss_pred cCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-
Q 044933 156 TALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP- 234 (570)
Q Consensus 156 ~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~- 234 (570)
|.++.+|..+. ++|++|++++|.+.+..+. .+..+++|+.|++++|.+..++.
T Consensus 182 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~------------------------~l~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 182 AKLTGIPKDLP--ETLNELHLDHNKIQAIELE------------------------DLLRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp SBCSSCCSSSC--SSCSCCBCCSSCCCCCCTT------------------------SSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred CCCCccCcccc--CCCCEEECCCCcCCccCHH------------------------HhcCCCCCCEEECCCCcCCcCChh
Confidence 55555554432 4555555555544444444 44444555555555555544433
Q ss_pred hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC-cccCC------CCCccEEEccCCccc--cc-C
Q 044933 235 SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP-ESLGL------LSSVTTLHLEGNNFE--RI-P 304 (570)
Q Consensus 235 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip-~~l~~------l~~L~~L~L~~n~l~--~l-p 304 (570)
.+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++++ ..+.. .++|+.|++++|.+. .+ |
T Consensus 236 ~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp GGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred HhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 3445555555555555432 23334555566666666666666543 22322 466788888888776 33 4
Q ss_pred ccccCCCCcCEEcccCcc
Q 044933 305 ESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 305 ~~l~~l~~L~~L~Ls~~~ 322 (570)
..+..+++|+.+++++|+
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 567778888888888765
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.4e-26 Score=255.41 Aligned_cols=360 Identities=18% Similarity=0.143 Sum_probs=245.9
Q ss_pred CCCceEEEEecCCcccccccccccC-CCCC-CCccEEEecCCCCCCCCCC-c-CCCCcEEEECCCCChhhccc-cccCcc
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQ-GPGF-TEVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHSNIEQLFD-SVQDYG 75 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~-~~~~-~~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~l~~l~~-~~~~l~ 75 (570)
|++||+|++++|. ...+|. .|.. ++|++|++++|.++.+|.. | .+++|++|+|++|+++.++. .++.++
T Consensus 75 l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 75 FPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp CTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred CCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 5799999997653 234544 5666 9999999999999999975 4 79999999999999999976 589999
Q ss_pred CCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CC---------------------------CCCC
Q 044933 76 KLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HL---------------------------KLLK 127 (570)
Q Consensus 76 ~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l---------------------------~~L~ 127 (570)
+|++|++++|. ++.++.+.+...+++|++|++++|.+.+..+..+ .+ ..++
T Consensus 149 ~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 149 TLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 99999999976 7777666555899999999999998765443332 11 1122
Q ss_pred EEeeeCCCCC---------------------------CCCC---------------------------------------
Q 044933 128 ELDLSGCSKL---------------------------KRLP--------------------------------------- 141 (570)
Q Consensus 128 ~L~Ls~~~~~---------------------------~~~p--------------------------------------- 141 (570)
.+++.++... ..+.
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence 3333322100 0000
Q ss_pred ---------------C-CCCCCccEEEecCcCCCc--------------------CChhccCCCCCCEEeccCCCCCC--
Q 044933 142 ---------------E-ISPGNITTMHLDGTALEE--------------------LPSSIECLSKLSHLGLADCKSLK-- 183 (570)
Q Consensus 142 ---------------~-~~~~~L~~L~L~~~~i~~--------------------lp~~~~~l~~L~~L~L~~~~~~~-- 183 (570)
. .....++.|++.++.+.. .+.....+++|+.|++++|.+..
T Consensus 308 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 308 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp CSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred cccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence 0 000245556665554332 11234468899999999987643
Q ss_pred cCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCC--chhccCCCCcEEEeccCCCCCCcccccc
Q 044933 184 SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVP--PSIVRLKRVRGIYFGRNKGLSLPITFSV 261 (570)
Q Consensus 184 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~--~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 261 (570)
..+..+..+.+|+.|++..+.... .+..+..+++|+.+++..+...... ..+..+++++.++++.|. .....+..+
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~ 465 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIF 465 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTT
T ss_pred ccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccc-ccccccccc
Confidence 455566677888888888765433 3445667788888888877766332 356677888888888887 455556667
Q ss_pred ccCCCCCeeecccCCCCC--cCcccCCCCCccEEEccCCccccc-CccccCCCCcCEEcccCccccCcCCC---CCcccc
Q 044933 262 DGLQNLRDLNLNDCGIME--LPESLGLLSSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCERLQSLPK---LPCNLL 335 (570)
Q Consensus 262 ~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~~~~l~~lp~---~~~~L~ 335 (570)
..+++|+.|++++|.+.. .|..+..+++|++|+|++|+++.+ |..+.++++|++|+|++|+.....|. ..++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 778888888888887544 577788888888888888888866 46677888888888888754333232 246788
Q ss_pred eecccccccCCcCCCCCCCCCccccceeeccCCcc
Q 044933 336 SLDAHHCTALESLPGLFPSSDESYLRTLYLSDNFK 370 (570)
Q Consensus 336 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 370 (570)
.|+++++......+..+.. -.++|+.|++++|+-
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~-l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDF 579 (635)
T ss_dssp EEECTTSCCCBCCSSCTTC-CCTTCCEEECTTCCB
T ss_pred EEECCCCcCCCCCHHHHHh-hhCcCCEEEeeCCCC
Confidence 8888876544444443321 125688999887643
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.5e-28 Score=243.96 Aligned_cols=248 Identities=20% Similarity=0.258 Sum_probs=184.9
Q ss_pred CCcEEEECCCCChh---hccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCC
Q 044933 52 EKLVLLEMPHSNIE---QLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLK 127 (570)
Q Consensus 52 ~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~ 127 (570)
.++++|+|++|++. .+|..+..+++|++|++++++.+.+..+..+ ..+++|++|+|++|.+.+.+|..+ .+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57888888888887 4778888888888888886444666555566 788888888888888777777766 677666
Q ss_pred EEeeeCCCCCCCCCCCCCCCccEEEecCcCCC-cCChhccCCCCCCEEeccCCCCCCcCCcccCCCC-CCCEEEEcCCCC
Q 044933 128 ELDLSGCSKLKRLPEISPGNITTMHLDGTALE-ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLK-SLDVLIIDGCSN 205 (570)
Q Consensus 128 ~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~L~~~~~ 205 (570)
+|++++| .++ .+|..+..+++|++|++++|.+.+.+|..+.+++ +|++|++++|.+
T Consensus 129 ~L~Ls~N----------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 129 TLDFSYN----------------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEECCSS----------------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred EEeCCCC----------------------ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 6666664 344 4566777788888888888877777777777777 788888888777
Q ss_pred CCCcchhhcCCCcCceeccccccCc-cCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC-cCcc
Q 044933 206 LQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPES 283 (570)
Q Consensus 206 ~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~ 283 (570)
.+..|..++.++ |+.|++++|.++ ..|..+..+++|+.|++++|.+ ....+. +..+++|++|++++|.+++ +|.+
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-CCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-eeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 777777777776 888888888777 4555677777888888887773 333333 6677888888888888874 6778
Q ss_pred cCCCCCccEEEccCCccc-ccCccccCCCCcCEEcccCccccCc
Q 044933 284 LGLLSSVTTLHLEGNNFE-RIPESIIQLSNLERLFIRYCERLQS 326 (570)
Q Consensus 284 l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~~~~l~~ 326 (570)
+..+++|+.|+|++|.++ .+|.. ..+++|+.|++++|+.+..
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 888888888888888887 56654 7778888888888765443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.6e-27 Score=237.36 Aligned_cols=243 Identities=18% Similarity=0.269 Sum_probs=191.8
Q ss_pred CCCcEEEecCCCCCC--cCCCcc-CCCCCCEEeeeC-CCCCCCCCCCCC--CCccEEEecCcCCC-cCChhccCCCCCCE
Q 044933 101 NNLVILNLSGCKNLQ--SLPARI-HLKLLKELDLSG-CSKLKRLPEISP--GNITTMHLDGTALE-ELPSSIECLSKLSH 173 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~--~~p~~~-~l~~L~~L~Ls~-~~~~~~~p~~~~--~~L~~L~L~~~~i~-~lp~~~~~l~~L~~ 173 (570)
.+++.|+|++|.+.+ .+|..+ .+++|++|++++ |.....+|..+. ++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 345555555555444 444444 455555555553 333333443222 45666666667776 67888999999999
Q ss_pred EeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCC-cCceeccccccCc-cCCchhccCCCCcEEEeccCC
Q 044933 174 LGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLE-ALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 174 L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~l~~n~ 251 (570)
|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..++ +|+.|++++|.+. .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999989999999999999999999999889999999998 9999999999998 7888888887 9999999998
Q ss_pred CCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCccc-ccCccccCCCCcCEEcccCccccCcCCCC
Q 044933 252 GLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFE-RIPESIIQLSNLERLFIRYCERLQSLPKL 330 (570)
Q Consensus 252 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~ 330 (570)
+....+..+..+++|+.|++++|.+++.+..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|+..+.+|..
T Consensus 209 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 -LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp -EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred -ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 5556777889999999999999999986666889999999999999998 88999999999999999999877777754
Q ss_pred --CcccceecccccccC
Q 044933 331 --PCNLLSLDAHHCTAL 345 (570)
Q Consensus 331 --~~~L~~L~l~~c~~l 345 (570)
.++|+.+++.+++.+
T Consensus 288 ~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TTGGGSCGGGTCSSSEE
T ss_pred ccccccChHHhcCCCCc
Confidence 345556666555443
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=237.55 Aligned_cols=271 Identities=17% Similarity=0.187 Sum_probs=197.2
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
+....++.+++.++.+|..+ .++|++|++++|+++.++. .+..+++|++|++++|. +++++...| ..+++|++|+|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSF-SSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhc-CCCCCCCEEEC
Confidence 55666888888888888866 3588899999988888765 67888888888888865 777776667 78888888888
Q ss_pred cCCCCCCcCCCc-c-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh--hccCCCCCCEEeccCCC-CCC
Q 044933 109 SGCKNLQSLPAR-I-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS--SIECLSKLSHLGLADCK-SLK 183 (570)
Q Consensus 109 ~~~~~~~~~p~~-~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~-~~~ 183 (570)
++|.+.+ +|.. + .+++|++|++++| .++.+|. .+..+++|++|++++|. +..
T Consensus 108 s~n~l~~-~~~~~~~~l~~L~~L~L~~n----------------------~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 108 SYNYLSN-LSSSWFKPLSSLTFLNLLGN----------------------PYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CSSCCSS-CCHHHHTTCTTCSEEECTTC----------------------CCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCcCCc-CCHhHhCCCccCCEEECCCC----------------------CCcccCchhhhccCCCCcEEECCCCccccc
Confidence 8887554 3433 3 5666666666654 4455554 46677778888887774 333
Q ss_pred cCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchh-ccCCCCcEEEeccCCCCCCcccc--c
Q 044933 184 SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSI-VRLKRVRGIYFGRNKGLSLPITF--S 260 (570)
Q Consensus 184 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l-~~l~~L~~L~l~~n~~~~~~~~~--~ 260 (570)
..+..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|.+....... .
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 44556777788888888887777766777777888888888888777666644 35778888888888743322111 1
Q ss_pred cccCCCCCeeecccCCCCC-----cCcccCCCCCccEEEccCCcccccCccc-cCCCCcCEEcccCccccCc
Q 044933 261 VDGLQNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLEGNNFERIPESI-IQLSNLERLFIRYCERLQS 326 (570)
Q Consensus 261 ~~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~Ls~~~~l~~ 326 (570)
....+.++.++++++.+.+ +|.++..+++|+.|+|++|.++.+|..+ ..+++|++|++++|+....
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2345667788888887765 6778888999999999999999888774 7889999999999875543
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.7e-25 Score=239.88 Aligned_cols=263 Identities=21% Similarity=0.237 Sum_probs=214.6
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
.+++.|+++++.++.+|..+. ++|++|+|++|+++.+|. .+++|++|+|++|. +++++. .+++|++|+|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECc
Confidence 568999999999999998774 799999999999998877 57899999999876 787763 57899999999
Q ss_pred CCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCccc
Q 044933 110 GCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGL 189 (570)
Q Consensus 110 ~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l 189 (570)
+|.+.+ +|. .+++|+.|++++|. ++.+|... ++|++|++++|.++.+|.. +.+|+.|++++|.+.+ +|
T Consensus 110 ~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~l-~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~--- 177 (622)
T 3g06_A 110 SNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVLP-PGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP--- 177 (622)
T ss_dssp SCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---
T ss_pred CCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCCC-CCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---
Confidence 987544 555 67889999999875 55676644 6899999999999988863 5788999999988654 55
Q ss_pred CCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCe
Q 044933 190 CKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRD 269 (570)
Q Consensus 190 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 269 (570)
..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|+.|++++|.+... + ..+++|+.
T Consensus 178 ~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~l--p---~~l~~L~~ 245 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSL--P---VLPSELKE 245 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC--C---CCCTTCCE
T ss_pred ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcC--C---CCCCcCcE
Confidence 457889999999987654 443 247899999999999988863 47899999999985442 2 46689999
Q ss_pred eecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCC
Q 044933 270 LNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPK 329 (570)
Q Consensus 270 L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~ 329 (570)
|++++|.++.+|. .+++|+.|+|++|.|+.+|..+..+++|+.|+|++|+..+..|.
T Consensus 246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 246 LMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred EECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9999999999887 67899999999999999999999999999999999886655443
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.6e-25 Score=226.69 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=138.0
Q ss_pred CCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCChhccCCCCCCEEec
Q 044933 100 LNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPSSIECLSKLSHLGL 176 (570)
Q Consensus 100 l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L 176 (570)
.++++.|+|++|.+. .+|..+ .+++|++|+|++|... .+|.... ++|++|+|++|.++.+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 355666666665543 444444 5566666666655432 4443222 4555555555666677777777888888888
Q ss_pred cCCCCCCcCCcccCC---------CCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEe
Q 044933 177 ADCKSLKSLPSGLCK---------LKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYF 247 (570)
Q Consensus 177 ~~~~~~~~lp~~l~~---------l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l 247 (570)
++|...+.+|..+.. +++|++|++++|.+. .+|..++.+++|++|++++|.+..+|..+..+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 877777777766544 667777777776554 5666666677777777777777766666666677777777
Q ss_pred ccCCCCCCccccccccCCCCCeeecccCCCCC-cCcccCCCCCccEEEccCCccc-ccCccccCCCCcCEEcccC
Q 044933 248 GRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGNNFE-RIPESIIQLSNLERLFIRY 320 (570)
Q Consensus 248 ~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~ 320 (570)
++|. .....+..+.++++|+.|++++|.+.+ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.+++..
T Consensus 237 s~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 237 RGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred cCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 7666 334455556666666666666665554 5666666666666666666543 6666666666666666664
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.6e-25 Score=226.68 Aligned_cols=222 Identities=22% Similarity=0.307 Sum_probs=130.2
Q ss_pred CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
.+++.|+++++.++.+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|. ++.++ ..+ ..+++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp-~~l-~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALP-ASI-ASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCC-GGG-GGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCc-HHH-hcCcCCCEEEC
Confidence 45666666666666666654 5666666666666666666666666666666666654 55443 234 56666666666
Q ss_pred cCCCCCCcCCCcc-C---------CCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccC
Q 044933 109 SGCKNLQSLPARI-H---------LKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLAD 178 (570)
Q Consensus 109 ~~~~~~~~~p~~~-~---------l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~ 178 (570)
++|...+.+|..+ . ++ +|++|++++|.++.+|..++.+++|++|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~----------------------~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLV----------------------NLQSLRLEWTGIRSLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEEST----------------------TCCEEEEEEECCCCCCGGGGGCTTCCEEEEES
T ss_pred CCCCCccccChhHhhccchhhhccCC----------------------CCCEEECcCCCcCcchHhhcCCCCCCEEEccC
Confidence 6666666665544 1 44 45555555555555555555566666666666
Q ss_pred CCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cCCchhccCCCCcEEEeccCCCCCCcc
Q 044933 179 CKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNKGLSLPI 257 (570)
Q Consensus 179 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~l~~n~~~~~~~ 257 (570)
|.+. .+|..+.++++|++|++++|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|. ....+
T Consensus 216 N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~i 293 (328)
T 4fcg_A 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRL 293 (328)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT-TCCCC
T ss_pred CCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC-chhhc
Confidence 5544 34445555666666666666555555555556666666666655443 555555666666666666665 34445
Q ss_pred ccccccCCCCCeeecccCCCC
Q 044933 258 TFSVDGLQNLRDLNLNDCGIM 278 (570)
Q Consensus 258 ~~~~~~l~~L~~L~Ls~n~l~ 278 (570)
|..+..+++|+.+++..+.+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSC
T ss_pred cHHHhhccCceEEeCCHHHHH
Confidence 555666666666666555443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.9e-26 Score=227.71 Aligned_cols=242 Identities=21% Similarity=0.260 Sum_probs=131.8
Q ss_pred cEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhcccc-ccCccCCcEEccCcccCCCCCC--CCcccccCCCCcEEEec
Q 044933 33 RYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDS-VQDYGKLNQIITAAFNFFSKIP--TPSLTQHLNNLVILNLS 109 (570)
Q Consensus 33 ~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~~--~~~~~~~l~~L~~L~L~ 109 (570)
+.++++++.++.+|..+ +++|++|+|++|+++.++.. ++.+++|++|++++|. ++... ...+ ..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECC
Confidence 35666777777777655 35677777777777766654 4666777777776654 44332 1233 345666666666
Q ss_pred CCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh--hccCCCCCCEEeccCCCCCCcCC
Q 044933 110 GCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS--SIECLSKLSHLGLADCKSLKSLP 186 (570)
Q Consensus 110 ~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~lp 186 (570)
+|.+. .+|..+ .+++|++|++++ |.++.++. .+..+++|++|++++|.+.+..+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQH----------------------SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTT----------------------SEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred CCccc-cChhhcCCCCCCCEEECCC----------------------CcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 65533 223222 334333333333 33444432 35556666666666666555555
Q ss_pred cccCCCCCCCEEEEcCCCCCC-CcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccccccC
Q 044933 187 SGLCKLKSLDVLIIDGCSNLQ-RLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGL 264 (570)
Q Consensus 187 ~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 264 (570)
..+.++++|++|++++|.+.+ ..|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+ ....+..+..+
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l 222 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCL 222 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTC
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCc
Confidence 555566666666666655544 3455555556666666666655544 33455555555555555552 22223334555
Q ss_pred CCCCeeecccCCCCC-cCcccCCCC-CccEEEccCCccc
Q 044933 265 QNLRDLNLNDCGIME-LPESLGLLS-SVTTLHLEGNNFE 301 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~-ip~~l~~l~-~L~~L~L~~n~l~ 301 (570)
++|+.|++++|.+++ .|..+..++ +|+.|+|++|.++
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 555555555555555 344455542 5566666655554
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=228.68 Aligned_cols=240 Identities=22% Similarity=0.254 Sum_probs=142.4
Q ss_pred EEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeC
Q 044933 55 VLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSG 133 (570)
Q Consensus 55 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~ 133 (570)
..++.++.+++.+|.++. ++++.|+|++|+ ++.++..+| ..+++|++|+|++|.+.+..+..+ ++++|++|+|++
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 344444444444444332 344455555433 444444444 445555555555554333333333 344444444444
Q ss_pred CCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcch-
Q 044933 134 CSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPE- 211 (570)
Q Consensus 134 ~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~- 211 (570)
| .++.+|. .+..+++|++|++++|.+....+..+.++++|++|++++|..++.++.
T Consensus 122 n----------------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 122 N----------------------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp S----------------------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred C----------------------cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 3 2233332 244555555555555554444444555566666666666555544443
Q ss_pred hhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCc
Q 044933 212 ELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSV 290 (570)
Q Consensus 212 ~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L 290 (570)
.+.++++|+.|++++|.++.+|. +..+++|+.|++++|. +....+..+.++++|+.|+|++|.++++ +..+..+++|
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred hhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 46666777777777777776663 6677777777777776 4445556677888888888888888875 5677888888
Q ss_pred cEEEccCCcccccCc-cccCCCCcCEEcccCcc
Q 044933 291 TTLHLEGNNFERIPE-SIIQLSNLERLFIRYCE 322 (570)
Q Consensus 291 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~ 322 (570)
+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 888888888887764 45678888888888775
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=2.5e-24 Score=228.06 Aligned_cols=241 Identities=20% Similarity=0.225 Sum_probs=154.4
Q ss_pred cEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeee
Q 044933 54 LVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLS 132 (570)
Q Consensus 54 L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls 132 (570)
...++.++.+++.+|.++. ++|+.|+|++|+ +++++...| ..+++|++|+|++|.+.+..|..+ .+++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN-IQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc-CceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4455555555555555442 456666666544 555555555 566666666666665544444444 45555555554
Q ss_pred CCCCCCCCCCCCCCCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcch
Q 044933 133 GCSKLKRLPEISPGNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPE 211 (570)
Q Consensus 133 ~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~ 211 (570)
+| .++.+|.. +..+++|++|+|++|.+....+..+.++++|+.|++++|..++.++.
T Consensus 132 ~n----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 132 DN----------------------WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp SS----------------------CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CC----------------------cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 43 33333332 55566666666666665544444566666666666666555555544
Q ss_pred -hhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCC
Q 044933 212 -ELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSS 289 (570)
Q Consensus 212 -~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~ 289 (570)
.+..+++|+.|++++|.++.+|. +..+++|+.|++++|. +....+..+.++++|+.|++++|.++.+ +..+..+++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 46667777777777777776653 6677778888888777 4455566677888888888888888874 667788888
Q ss_pred ccEEEccCCcccccCc-cccCCCCcCEEcccCcc
Q 044933 290 VTTLHLEGNNFERIPE-SIIQLSNLERLFIRYCE 322 (570)
Q Consensus 290 L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~ 322 (570)
|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 8888888888887764 45678888888888875
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.2e-23 Score=229.40 Aligned_cols=264 Identities=24% Similarity=0.235 Sum_probs=219.6
Q ss_pred CceEEEEecCCcccccccccccCCCCCCCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEcc
Q 044933 3 NLRILKFYSSMNEENKCKMSYFQGPGFTEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIIT 82 (570)
Q Consensus 3 ~Lr~L~l~~~~~~~~~~~~~lp~~~~~~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L 82 (570)
+++.|+++++. ...+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~------L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESG------LTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSC------CSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCC------cCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 57889996543 236776655 899999999999999998 57999999999999999987 7899999999
Q ss_pred CcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCC
Q 044933 83 AAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELP 162 (570)
Q Consensus 83 s~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp 162 (570)
++|+ +++++. .+++|+.|++++|.+. .+|.. +++|++|++++|. ++.+|... .+|+.|++++|.++.+|
T Consensus 109 s~N~-l~~l~~-----~l~~L~~L~L~~N~l~-~lp~~--l~~L~~L~Ls~N~-l~~l~~~~-~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 109 FSNP-LTHLPA-----LPSGLCKLWIFGNQLT-SLPVL--PPGLQELSVSDNQ-LASLPALP-SELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CSCC-CCCCCC-----CCTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSCCC
T ss_pred cCCc-CCCCCC-----CCCCcCEEECCCCCCC-cCCCC--CCCCCEEECcCCc-CCCcCCcc-CCCCEEECCCCCCCCCc
Confidence 9976 888774 5799999999999854 46653 5999999999985 55666543 59999999999999999
Q ss_pred hhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCC
Q 044933 163 SSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRV 242 (570)
Q Consensus 163 ~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L 242 (570)
..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+. .+|. .+++|+.|++++|.++.+| ..+++|
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSEL 243 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred ---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcC
Confidence 557999999999998654 554 3589999999998765 4553 3588999999999999988 566899
Q ss_pred cEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccc-cCcccc
Q 044933 243 RGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFER-IPESII 308 (570)
Q Consensus 243 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~-lp~~l~ 308 (570)
+.|++++|.+.. ++. .+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++. .|..+.
T Consensus 244 ~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 244 KELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 999999998543 232 6789999999999999999999999999999999999983 344443
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.1e-26 Score=230.96 Aligned_cols=263 Identities=16% Similarity=0.147 Sum_probs=192.3
Q ss_pred CCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEe
Q 044933 52 EKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELD 130 (570)
Q Consensus 52 ~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ 130 (570)
..++.++++.+.+...+. .+..+++|++|++++|. ++++++..+ ..+++|++|+|++|.+.+..+ ...+++|++|+
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADL-APFTKLELLNLSSNVLYETLD-LESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHH-TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHh-hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEE
Confidence 346667788888876544 34567789999999875 777766667 888999999999988665444 33788888888
Q ss_pred eeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcc
Q 044933 131 LSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLP 210 (570)
Q Consensus 131 Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 210 (570)
+++|. ++.++.. ++|++|++++|.++.++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 87 Ls~n~-l~~l~~~--~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 87 LNNNY-VQELLVG--PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp CCSSE-EEEEEEC--TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CcCCc-cccccCC--CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 88875 3333322 5788888888888877643 36788888888888777767777788888888888887776656
Q ss_pred hhh-cCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCC
Q 044933 211 EEL-GNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSS 289 (570)
Q Consensus 211 ~~l-~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~ 289 (570)
..+ ..+++|++|++++|.++.++. ...+++|+.|++++|.+.. ++..+..+++|+.|++++|.++++|..+..+++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 555 467888888888888876644 3347778888888877432 233367777888888888888777777777788
Q ss_pred ccEEEccCCccc--ccCccccCCCCcCEEcccCccccC
Q 044933 290 VTTLHLEGNNFE--RIPESIIQLSNLERLFIRYCERLQ 325 (570)
Q Consensus 290 L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~~~~l~ 325 (570)
|+.|+|++|.+. .+|..+..+++|+.|++++++.++
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 888888888876 566777777777777777665443
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.3e-24 Score=215.64 Aligned_cols=137 Identities=22% Similarity=0.293 Sum_probs=80.6
Q ss_pred hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCC
Q 044933 164 SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRV 242 (570)
Q Consensus 164 ~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L 242 (570)
.+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..++.+++|+.|++++|.++.++. .+..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 34455555555555555555445555556666666666655544444455666666666666666665554 35556666
Q ss_pred cEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC-cccCCCCCccEEEccCCccc
Q 044933 243 RGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP-ESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 243 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~ 301 (570)
+.|++++|. +....+..+..+++|+.|++++|.+++++ ..+..+++|+.|+|++|.+.
T Consensus 180 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 180 DRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 666666665 33333445566666666666666666654 34666666777777766655
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=4.3e-28 Score=257.44 Aligned_cols=335 Identities=15% Similarity=0.126 Sum_probs=235.7
Q ss_pred CCceEEEEecCCcccccccccccCCCCC-CCccEEEecCCCCC-----CCCCCc-CCCCcEEEECCCCChhhc-cc-ccc
Q 044933 2 PNLRILKFYSSMNEENKCKMSYFQGPGF-TEVRYLHWHGYPLK-----LLPSNI-HPEKLVLLEMPHSNIEQL-FD-SVQ 72 (570)
Q Consensus 2 ~~Lr~L~l~~~~~~~~~~~~~lp~~~~~-~~L~~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~n~l~~l-~~-~~~ 72 (570)
++|+.|+++++.. .......-+.. ++|++|++++|.+. .+|..+ .+++|++|+|++|.+... +. ...
T Consensus 3 ~~l~~L~Ls~~~l----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCC----CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhccc----CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 4688999976432 11122222444 89999999999987 345444 678999999999998752 22 223
Q ss_pred Ccc----CCcEEccCcccCCCCCC----CCcccccCCCCcEEEecCCCCCCcCCCcc------CCCCCCEEeeeCCCCCC
Q 044933 73 DYG----KLNQIITAAFNFFSKIP----TPSLTQHLNNLVILNLSGCKNLQSLPARI------HLKLLKELDLSGCSKLK 138 (570)
Q Consensus 73 ~l~----~L~~L~Ls~~~~l~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~p~~~------~l~~L~~L~Ls~~~~~~ 138 (570)
.++ +|++|++++|. +++.. ...+ ..+++|++|+|++|.+....+..+ ..++|++|++++|....
T Consensus 79 ~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHhhCCCceeEEEccCCC-CCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 344 79999999976 66432 2344 788999999999998654322222 35689999999986433
Q ss_pred CC----CCCC--CCCccEEEecCcCCCcCC-hhcc-----CCCCCCEEeccCCCCCCc----CCcccCCCCCCCEEEEcC
Q 044933 139 RL----PEIS--PGNITTMHLDGTALEELP-SSIE-----CLSKLSHLGLADCKSLKS----LPSGLCKLKSLDVLIIDG 202 (570)
Q Consensus 139 ~~----p~~~--~~~L~~L~L~~~~i~~lp-~~~~-----~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~ 202 (570)
.. +... .++|++|++++|.++... ..+. ..++|++|++++|.+... ++..+..+++|++|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 21 1111 168999999999887532 2222 366999999999987663 567777889999999999
Q ss_pred CCCCCCc-----chhhcCCCcCceeccccccCcc-----CCchhccCCCCcEEEeccCCCCCCccccccc-----cCCCC
Q 044933 203 CSNLQRL-----PEELGNLEALDILHAIGTSITE-----VPPSIVRLKRVRGIYFGRNKGLSLPITFSVD-----GLQNL 267 (570)
Q Consensus 203 ~~~~~~~-----p~~l~~l~~L~~L~l~~n~i~~-----l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L 267 (570)
|.+.... +..+..+++|+.|++++|.++. ++..+..+++|++|++++|.+ ....+..+. ..++|
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC-HHHHHHHHHHHHTSTTCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC-chHHHHHHHHHhccCCccc
Confidence 8764432 2233468899999999999885 677788899999999999983 322222222 23689
Q ss_pred CeeecccCCCCC-----cCcccCCCCCccEEEccCCccccc-Cc----cccC-CCCcCEEcccCccccC----cCCCC--
Q 044933 268 RDLNLNDCGIME-----LPESLGLLSSVTTLHLEGNNFERI-PE----SIIQ-LSNLERLFIRYCERLQ----SLPKL-- 330 (570)
Q Consensus 268 ~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~n~l~~l-p~----~l~~-l~~L~~L~Ls~~~~l~----~lp~~-- 330 (570)
+.|++++|.+++ ++..+..+++|++|+|++|.++.. +. .+.. .++|++|++++|+... .+|..
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 999999999886 466777889999999999998743 22 2222 6799999999986543 45533
Q ss_pred -Ccccceecccccc
Q 044933 331 -PCNLLSLDAHHCT 343 (570)
Q Consensus 331 -~~~L~~L~l~~c~ 343 (570)
.++|++|++++|.
T Consensus 396 ~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 396 ANHSLRELDLSNNC 409 (461)
T ss_dssp HCCCCCEEECCSSS
T ss_pred hCCCccEEECCCCC
Confidence 4789999999875
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=7.7e-24 Score=223.43 Aligned_cols=244 Identities=22% Similarity=0.316 Sum_probs=200.1
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhcc-ccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLF-DSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
...+.++..+..++.+|..+ +++++.|+|++|+++.++ ..+..+++|++|+|++|. +++++...| ..+++|++|+|
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~-~~l~~L~~L~L 119 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAF-NGLANLNTLEL 119 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGG-TTCSSCCEEEC
T ss_pred CCCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhc-cCCccCCEEEC
Confidence 46788999999999999877 479999999999999885 678999999999999976 888887778 89999999999
Q ss_pred cCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCC
Q 044933 109 SGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLP 186 (570)
Q Consensus 109 ~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp 186 (570)
++|.+....+..+ .+++|++|+|++|. ++.+|. .+..+++|++|++++|...+.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------------i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNP----------------------IESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCC----------------------CCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCc----------------------ccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 9998665444444 67777777777653 444443 47778888888888877666655
Q ss_pred c-ccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccccccC
Q 044933 187 S-GLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGL 264 (570)
Q Consensus 187 ~-~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 264 (570)
. .+.++++|++|++++|.+. .+| .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +....+..+.++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 254 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNL 254 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTC
T ss_pred cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCC
Confidence 4 5788888999998888654 445 477888999999999998866 5678889999999999998 555556778899
Q ss_pred CCCCeeecccCCCCCcC-cccCCCCCccEEEccCCccc
Q 044933 265 QNLRDLNLNDCGIMELP-ESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~ 301 (570)
++|+.|+|++|+++.+| ..+..+++|+.|+|++|.+.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999999999999975 56788999999999999876
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=6.8e-24 Score=224.66 Aligned_cols=244 Identities=23% Similarity=0.325 Sum_probs=198.7
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhc-cccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
...+.++.++..++.+|..+ +++|++|+|++|+++.+ +..+..+++|+.|+|++|. +++++...| ..+++|++|+|
T Consensus 54 ~~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L 130 (452)
T 3zyi_A 54 NQFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAF-NGLASLNTLEL 130 (452)
T ss_dssp SSSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEEC
T ss_pred CCCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhc-cCcccCCEEEC
Confidence 45678999999999999876 47999999999999987 5679999999999999976 888887788 89999999999
Q ss_pred cCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCC
Q 044933 109 SGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLP 186 (570)
Q Consensus 109 ~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp 186 (570)
++|.+....+..+ .+++|++|+|++|. ++.+|. .+..+++|+.|++++|..++.++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------------l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNP----------------------IESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCC----------------------CCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCC----------------------cceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 9998665554445 67777777777754 444443 46778888888888877666665
Q ss_pred c-ccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccccccC
Q 044933 187 S-GLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGL 264 (570)
Q Consensus 187 ~-~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 264 (570)
. .+.++++|++|++++|.+.+ +| .+..+++|+.|++++|.+..+ |..+.++++|+.|++++|. +....+..+.++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 265 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGL 265 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred hhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCC
Confidence 4 47788888888888887654 34 477888899999999988866 5578889999999999988 555556678899
Q ss_pred CCCCeeecccCCCCCcC-cccCCCCCccEEEccCCccc
Q 044933 265 QNLRDLNLNDCGIMELP-ESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~ 301 (570)
++|+.|+|++|+++++| ..+..+++|+.|+|++|.+.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999999999975 56788999999999999876
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=222.26 Aligned_cols=257 Identities=17% Similarity=0.212 Sum_probs=202.0
Q ss_pred ccccCCCCCCCccEEEecCCCCCCCCC-Cc-CCCCcEEEECCCCChhhcc-ccccCccCCcEEccCcccCCCCCCCCccc
Q 044933 21 MSYFQGPGFTEVRYLHWHGYPLKLLPS-NI-HPEKLVLLEMPHSNIEQLF-DSVQDYGKLNQIITAAFNFFSKIPTPSLT 97 (570)
Q Consensus 21 ~~lp~~~~~~~L~~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~ 97 (570)
..+|.++. ++|++|++++|.++.+|. .+ .+++|++|++++|+++.++ ..+..+++|++|++++|. +++++...+
T Consensus 44 ~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~- 120 (353)
T 2z80_A 44 NSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF- 120 (353)
T ss_dssp SSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-
T ss_pred cccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-
Confidence 45666544 799999999999999887 34 8999999999999999885 569999999999999976 888876557
Q ss_pred ccCCCCcEEEecCCCCCCcCCC--cc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEE
Q 044933 98 QHLNNLVILNLSGCKNLQSLPA--RI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHL 174 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~~p~--~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 174 (570)
..+++|++|++++|.+. .+|. .+ .+++|++|++++|..++.++ +..++.+++|++|
T Consensus 121 ~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~l~~L~~L 179 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ--------------------RKDFAGLTFLEEL 179 (353)
T ss_dssp TTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC--------------------TTTTTTCCEEEEE
T ss_pred CCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC--------------------HHHccCCCCCCEE
Confidence 89999999999999865 4555 44 78899999998875443332 3456677788888
Q ss_pred eccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcch-hhcCCCcCceeccccccCccCCc----hhccCCCCcEEEecc
Q 044933 175 GLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPE-ELGNLEALDILHAIGTSITEVPP----SIVRLKRVRGIYFGR 249 (570)
Q Consensus 175 ~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~l~~n~i~~l~~----~l~~l~~L~~L~l~~ 249 (570)
++++|.+.+..|..+.++++|++|++++|.. +.+|. .+..+++|+.|++++|.++.++. .....+.++.+++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 8888887777778888888888888888775 34443 34567888888888888875543 123467788899988
Q ss_pred CCCCCC---ccccccccCCCCCeeecccCCCCCcCcc-cCCCCCccEEEccCCcccc
Q 044933 250 NKGLSL---PITFSVDGLQNLRDLNLNDCGIMELPES-LGLLSSVTTLHLEGNNFER 302 (570)
Q Consensus 250 n~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~L~~n~l~~ 302 (570)
+.+... .++..+..+++|+.|++++|.++++|.. +..+++|++|+|++|.+..
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 874332 3455678899999999999999999877 4899999999999998873
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.1e-25 Score=226.53 Aligned_cols=243 Identities=17% Similarity=0.178 Sum_probs=166.0
Q ss_pred CCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccc-------cCCCCcEEEecCCCCCCcCCCcc---
Q 044933 52 EKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQ-------HLNNLVILNLSGCKNLQSLPARI--- 121 (570)
Q Consensus 52 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~-------~l~~L~~L~L~~~~~~~~~p~~~--- 121 (570)
.+|++|++++|.+ .+|..+... |+.|+|++|. ++....+.... .+++|++|+|++|.+.+.+|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3445555555555 444444332 5555555543 33322222111 35555555555555554444432
Q ss_pred CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCC-----CCCCEEeccCCCCCCcCCcccCCCCCCC
Q 044933 122 HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECL-----SKLSHLGLADCKSLKSLPSGLCKLKSLD 196 (570)
Q Consensus 122 ~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 196 (570)
.++ +|++|++++|.++++|..++.+ ++|++|++++|.+.+..|..+.++++|+
T Consensus 119 ~l~----------------------~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 119 TGP----------------------DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CSC----------------------CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cCC----------------------CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 333 4555555556666666666655 7888888888887777777888888888
Q ss_pred EEEEcCCCCCCC--cchhh--cCCCcCceeccccccCccCC---c-hhccCCCCcEEEeccCCCCCCccccccccCCCCC
Q 044933 197 VLIIDGCSNLQR--LPEEL--GNLEALDILHAIGTSITEVP---P-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLR 268 (570)
Q Consensus 197 ~L~L~~~~~~~~--~p~~l--~~l~~L~~L~l~~n~i~~l~---~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 268 (570)
+|++++|...+. ++..+ +.+++|++|++++|.++.++ . .+..+++|+.|++++|.+........+..+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 888888876654 33444 78888899999988888443 2 2357789999999999854433234566789999
Q ss_pred eeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccc
Q 044933 269 DLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCER 323 (570)
Q Consensus 269 ~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~ 323 (570)
+|+|++|.++++|..+. ++|++|+|++|+++.+|. +..+++|++|++++|+.
T Consensus 257 ~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 257 SLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred EEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 99999999999988777 899999999999998886 88999999999999764
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.4e-24 Score=215.31 Aligned_cols=217 Identities=21% Similarity=0.264 Sum_probs=134.5
Q ss_pred ccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhcc-ccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecC
Q 044933 32 VRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLF-DSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSG 110 (570)
Q Consensus 32 L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 110 (570)
-+.+++++..++.+|..+ +++|++|++++|+++.++ ..+..+++|++|++++|. ++++.+..+ ..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAF-TGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhc-CCccCCCEEeCCC
Confidence 367888888888888765 578899999999888876 457888888888888865 777766667 7888888888888
Q ss_pred CCCCCcC-CCcc-CCCCCCEEeeeCCCCCCCCCCCCC--CCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCCcC
Q 044933 111 CKNLQSL-PARI-HLKLLKELDLSGCSKLKRLPEISP--GNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLKSL 185 (570)
Q Consensus 111 ~~~~~~~-p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~--~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~l 185 (570)
|...+.+ |..+ .+++|++|++++|......|..+. ++|++|++++|.++.++.. ++.+++|++|++++|.+.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 8744444 5545 677777777777654333332222 4555555555555555433 455555555555555544433
Q ss_pred CcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCC
Q 044933 186 PSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 186 p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~ 251 (570)
+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 3345555555555555555444444555555555555555555554443 24444444444444444
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=6e-24 Score=213.07 Aligned_cols=242 Identities=16% Similarity=0.178 Sum_probs=186.0
Q ss_pred EEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCc--CCCcc-CCCCCCEEee
Q 044933 55 VLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQS--LPARI-HLKLLKELDL 131 (570)
Q Consensus 55 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~--~p~~~-~l~~L~~L~L 131 (570)
+.++.+++.++.+|.++. ++|++|++++|+ +++++...| ..+++|++|+|++|.+... .|..+ .+++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L----- 80 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL----- 80 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC-----
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCCccCcccCccccccccccc-----
Confidence 467888888888887553 688888888865 777776556 7788888888888765422 12222 44444
Q ss_pred eCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCC-cccCCCCCCCEEEEcCCCCCCCcc
Q 044933 132 SGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLP-SGLCKLKSLDVLIIDGCSNLQRLP 210 (570)
Q Consensus 132 s~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p 210 (570)
++|++++|.++.+|..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+
T Consensus 81 -----------------~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 81 -----------------KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp -----------------CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred -----------------CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 44455555666778788899999999999998766554 578889999999999998888888
Q ss_pred hhhcCCCcCceeccccccCcc--CCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC-cccCCC
Q 044933 211 EELGNLEALDILHAIGTSITE--VPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP-ESLGLL 287 (570)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~i~~--l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip-~~l~~l 287 (570)
..+..+++|++|++++|.+.. +|..+..+++|+.|++++|. +....+..+..+++|+.|++++|.+++++ ..+..+
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 888899999999999998874 77788888899999999888 44555666788888888888888888864 467888
Q ss_pred CCccEEEccCCccccc-CccccCC-CCcCEEcccCccc
Q 044933 288 SSVTTLHLEGNNFERI-PESIIQL-SNLERLFIRYCER 323 (570)
Q Consensus 288 ~~L~~L~L~~n~l~~l-p~~l~~l-~~L~~L~Ls~~~~ 323 (570)
++|+.|+|++|.++.. |..+..+ ++|++|+|++|+.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 8888888888888754 5567777 4888888888764
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=4.2e-28 Score=257.57 Aligned_cols=336 Identities=17% Similarity=0.174 Sum_probs=247.3
Q ss_pred CCccEEEecCCCCCCCCCC--c-CCCCcEEEECCCCChh-----hccccccCccCCcEEccCcccCCCCCCCCcccccCC
Q 044933 30 TEVRYLHWHGYPLKLLPSN--I-HPEKLVLLEMPHSNIE-----QLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLN 101 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~--~-~~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~ 101 (570)
++|++|+++++.+...+.. + .+++|++|+|++|+++ .++..+..+++|++|++++|. +++.....+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence 4689999999998755432 3 6789999999999988 457778889999999999976 65543334434555
Q ss_pred ----CCcEEEecCCCCCC----cCCCcc-CCCCCCEEeeeCCCCCCCCCC----C---CCCCccEEEecCcCCCc-----
Q 044933 102 ----NLVILNLSGCKNLQ----SLPARI-HLKLLKELDLSGCSKLKRLPE----I---SPGNITTMHLDGTALEE----- 160 (570)
Q Consensus 102 ----~L~~L~L~~~~~~~----~~p~~~-~l~~L~~L~Ls~~~~~~~~p~----~---~~~~L~~L~L~~~~i~~----- 160 (570)
+|++|+|++|.+.. .++..+ .+++|++|++++|......+. . ...+|++|++++|.++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999998663 456666 899999999999873221111 0 12479999999999985
Q ss_pred CChhccCCCCCCEEeccCCCCCCcCCcccC-----CCCCCCEEEEcCCCCCCC----cchhhcCCCcCceeccccccCcc
Q 044933 161 LPSSIECLSKLSHLGLADCKSLKSLPSGLC-----KLKSLDVLIIDGCSNLQR----LPEELGNLEALDILHAIGTSITE 231 (570)
Q Consensus 161 lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~-----~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~l~~n~i~~ 231 (570)
++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 456678889999999999986554333332 366999999999987664 57778889999999999998873
Q ss_pred C-----Cchh-ccCCCCcEEEeccCCCCCCc---cccccccCCCCCeeecccCCCCC-----cCccc-CCCCCccEEEcc
Q 044933 232 V-----PPSI-VRLKRVRGIYFGRNKGLSLP---ITFSVDGLQNLRDLNLNDCGIME-----LPESL-GLLSSVTTLHLE 296 (570)
Q Consensus 232 l-----~~~l-~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~-----ip~~l-~~l~~L~~L~L~ 296 (570)
. ...+ ..+++|++|++++|.+.... ++..+..+++|++|++++|.+.+ +...+ ...++|+.|+|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 2 2222 35899999999999844322 45567778999999999999875 22222 234799999999
Q ss_pred CCcccc-----cCccccCCCCcCEEcccCccccCc--------CCCCCcccceecccccccCC----cCCCCCCCCCccc
Q 044933 297 GNNFER-----IPESIIQLSNLERLFIRYCERLQS--------LPKLPCNLLSLDAHHCTALE----SLPGLFPSSDESY 359 (570)
Q Consensus 297 ~n~l~~-----lp~~l~~l~~L~~L~Ls~~~~l~~--------lp~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~~~ 359 (570)
+|.++. ++..+..+++|++|++++|+.... ++...++|+.|++++|..-. .++..+ ..+++
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~ 399 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL--LANHS 399 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH--HhCCC
Confidence 999874 566778889999999999864322 11124589999998874321 333221 13467
Q ss_pred cceeeccCC
Q 044933 360 LRTLYLSDN 368 (570)
Q Consensus 360 L~~L~l~~~ 368 (570)
|++|++++|
T Consensus 400 L~~L~l~~N 408 (461)
T 1z7x_W 400 LRELDLSNN 408 (461)
T ss_dssp CCEEECCSS
T ss_pred ccEEECCCC
Confidence 888888877
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.3e-24 Score=228.84 Aligned_cols=237 Identities=16% Similarity=0.132 Sum_probs=168.1
Q ss_pred CccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEE
Q 044933 73 DYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMH 152 (570)
Q Consensus 73 ~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~ 152 (570)
.+++|+.|+|++|. ++++++..| ..+++|++|+|++|.+.+..| ...+++|++|+|++|. ++.+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~--~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADL-APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG--PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGG-TTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEEC--TTCCEEE
T ss_pred cCCCccEEEeeCCc-CCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCCC--CCcCEEE
Confidence 34467777777754 666655555 677777777777776554444 2366777777777764 3333322 4777777
Q ss_pred ecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhc-CCCcCceeccccccCcc
Q 044933 153 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELG-NLEALDILHAIGTSITE 231 (570)
Q Consensus 153 L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~l~~n~i~~ 231 (570)
+++|.++.++.. .+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+. .+++|+.|++++|.++.
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 777777776643 467888888888887777777788888888888888877776676665 67888888888888876
Q ss_pred CCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCccc--ccCccccC
Q 044933 232 VPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFE--RIPESIIQ 309 (570)
Q Consensus 232 l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~--~lp~~l~~ 309 (570)
++. ...+++|+.|++++|.+. .. +..+..+++|+.|+|++|.++++|..+..+++|+.|++++|.+. .+|..+..
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~-~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLA-FM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCC-EE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred ccc-cccCCCCCEEECCCCCCC-CC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 644 335778888888888733 32 33377778888888888888888877888888888888888877 66777777
Q ss_pred CCCcCEEcccC
Q 044933 310 LSNLERLFIRY 320 (570)
Q Consensus 310 l~~L~~L~Ls~ 320 (570)
++.|+.++++.
T Consensus 261 l~~L~~l~~~~ 271 (487)
T 3oja_A 261 NQRVQTVAKQT 271 (487)
T ss_dssp CHHHHHHHHHH
T ss_pred CCCCcEEeccc
Confidence 77777777753
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=3.2e-24 Score=216.20 Aligned_cols=258 Identities=16% Similarity=0.088 Sum_probs=201.5
Q ss_pred CCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEec
Q 044933 76 KLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLD 154 (570)
Q Consensus 76 ~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~ 154 (570)
.++..+++.++ +...+...+ ..+++|++|+|++|.+.+..|..+ .+++|++|+|++|......+....++|++|+++
T Consensus 11 ~l~i~~ls~~~-l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSS-LKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTT-HHHHHHHHH-TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECC
T ss_pred ceeEeeccccc-hhhhHHHHh-ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECc
Confidence 35556666644 444433333 678899999999999877666666 899999999999875444442223799999999
Q ss_pred CcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCC-
Q 044933 155 GTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVP- 233 (570)
Q Consensus 155 ~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~- 233 (570)
+|.+++++. .++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..++.+++|++|++++|.+..++
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 999988763 48999999999987765544 4688999999999988877778889999999999999999654
Q ss_pred chh-ccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCC
Q 044933 234 PSI-VRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSN 312 (570)
Q Consensus 234 ~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 312 (570)
..+ ..+++|++|++++|.+... .....+++|++|++++|.++++|..+..+++|+.|+|++|.++.+|..+..+++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 444 4789999999999995443 223458999999999999999988899999999999999999999999999999
Q ss_pred cCEEcccCcccc-CcCCCC---CcccceecccccccC
Q 044933 313 LERLFIRYCERL-QSLPKL---PCNLLSLDAHHCTAL 345 (570)
Q Consensus 313 L~~L~Ls~~~~l-~~lp~~---~~~L~~L~l~~c~~l 345 (570)
|+.|++++|+.. ..+|.. .+.|+.|++.++..+
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 999999998765 333332 234555555544433
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=3e-24 Score=215.90 Aligned_cols=242 Identities=19% Similarity=0.185 Sum_probs=184.5
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhh--cccccc-------CccCCcEEccCcccCCCCCCCCcc-ccc
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQ--LFDSVQ-------DYGKLNQIITAAFNFFSKIPTPSL-TQH 99 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~~~~~~-~~~ 99 (570)
++|++|++++|.+ .+|..+. ..|++|+|++|.++. ++..+. .+++|++|++++|. +++..+..+ ...
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHHHHHhc
Confidence 6799999999999 8887652 239999999999964 555554 79999999999987 665443332 378
Q ss_pred CCCCcEEEecCCCCCCcCCCcc-CC-----CCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCC-hhccCCCCCC
Q 044933 100 LNNLVILNLSGCKNLQSLPARI-HL-----KLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELP-SSIECLSKLS 172 (570)
Q Consensus 100 l~~L~~L~L~~~~~~~~~p~~~-~l-----~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~ 172 (570)
+++|++|+|++|.+.+. |..+ .+ ++|++|++++ |.++.++ ..++.+++|+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~----------------------N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQ----------------------AHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEES----------------------CSCCCCCTTTCCCCSSCC
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeC----------------------CCCccchHHHhccCCCCC
Confidence 99999999999997776 6655 34 5666666655 4455555 5677888888
Q ss_pred EEeccCCCCCCc--CCccc--CCCCCCCEEEEcCCCCCC--Ccc-hhhcCCCcCceeccccccCccCC--chhccCCCCc
Q 044933 173 HLGLADCKSLKS--LPSGL--CKLKSLDVLIIDGCSNLQ--RLP-EELGNLEALDILHAIGTSITEVP--PSIVRLKRVR 243 (570)
Q Consensus 173 ~L~L~~~~~~~~--lp~~l--~~l~~L~~L~L~~~~~~~--~~p-~~l~~l~~L~~L~l~~n~i~~l~--~~l~~l~~L~ 243 (570)
+|++++|++.+. +|..+ .++++|++|++++|.+.+ .++ ..+..+++|+.|++++|.+...+ ..+..+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 888888886654 33344 778888999998887652 222 34467889999999999988654 3556788999
Q ss_pred EEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccc
Q 044933 244 GIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFER 302 (570)
Q Consensus 244 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~ 302 (570)
.|++++|.+. .+|..+. ++|++|++++|+++++|. +..+++|++|+|++|.++.
T Consensus 257 ~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 9999999854 4454444 889999999999999977 8999999999999998874
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-22 Score=217.12 Aligned_cols=217 Identities=17% Similarity=0.087 Sum_probs=186.2
Q ss_pred ccCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEec
Q 044933 98 QHLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGL 176 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L 176 (570)
..+++|++|+|++|.+.+..|..+ .+++|++|+|++|......|....++|++|+|++|.++.+|. .++|++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 345699999999999887777667 899999999999876555553333899999999999998774 389999999
Q ss_pred cCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCcc-CCchhc-cCCCCcEEEeccCCCCC
Q 044933 177 ADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITE-VPPSIV-RLKRVRGIYFGRNKGLS 254 (570)
Q Consensus 177 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~-l~~~l~-~l~~L~~L~l~~n~~~~ 254 (570)
++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|+.|++++|.++. .|..+. .+++|+.|++++|.+..
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99998776554 46899999999999988888889999999999999999995 455665 79999999999999543
Q ss_pred CccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCcccc
Q 044933 255 LPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERL 324 (570)
Q Consensus 255 ~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l 324 (570)
. .....+++|+.|+|++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 184 ~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 V---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c---cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 3 224468999999999999999988899999999999999999999999999999999999998765
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.5e-21 Score=192.62 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=126.8
Q ss_pred EEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCC
Q 044933 34 YLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCK 112 (570)
Q Consensus 34 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 112 (570)
..+..+..+..+|..+ +++|++|++++|+++.++. .+..+++|++|++++|. +++++...+ ..+++|++|+|++|.
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAY-QSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTT-TTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHc-cCCcCCCEEECCCCc
Confidence 4556666777777765 4678888888888877754 67777788888887764 666665566 677777777777776
Q ss_pred CCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCC-cCCccc
Q 044933 113 NLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLK-SLPSGL 189 (570)
Q Consensus 113 ~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~-~lp~~l 189 (570)
+.+..+..+ .+++|++|++++|. ++.++. .++.+++|++|++++|.+.+ .+|..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~ 145 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETN----------------------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSC----------------------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred cCccChhhhcCCccccEEECCCCC----------------------ccccCchhcccCCCCCEEECcCCccceecCchhh
Confidence 554444433 45555555554432 222222 24445555555555554433 234444
Q ss_pred CCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCc-EEEeccCCCCCCccccccccCCCCC
Q 044933 190 CKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVR-GIYFGRNKGLSLPITFSVDGLQNLR 268 (570)
Q Consensus 190 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~l~~L~ 268 (570)
.++++|++|++++|.+.+..+..+..+++|+ .|. .|++++|.+. ...+. .....+|+
T Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--------------------~l~l~L~ls~n~l~-~~~~~-~~~~~~L~ 203 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP--------------------LLNLSLDLSLNPMN-FIQPG-AFKEIRLK 203 (276)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCT--------------------TCCEEEECCSSCCC-EECTT-SSCSCCEE
T ss_pred ccCCCCCEEECCCCCCCcCCHHHhhhhhhcc--------------------ccceeeecCCCccc-ccCcc-ccCCCccc
Confidence 4455555555554444333333333333333 111 4455555422 11111 12233677
Q ss_pred eeecccCCCCCcCc-ccCCCCCccEEEccCCccc
Q 044933 269 DLNLNDCGIMELPE-SLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 269 ~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~ 301 (570)
.|++++|.++++|. .+..+++|+.|+|++|.++
T Consensus 204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred EEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 77777777777654 4577888888888888776
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.5e-21 Score=190.93 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=103.5
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCcc--CCchhccCCCC
Q 044933 165 IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITE--VPPSIVRLKRV 242 (570)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~--l~~~l~~l~~L 242 (570)
+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.. +|..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 3444444444444444444444444455555555555554444333345555566666666666553 45566666666
Q ss_pred cEEEeccCCCCCCccccccccCCCCC----eeecccCCCCCcCcccCCCCCccEEEccCCcccccCcc-ccCCCCcCEEc
Q 044933 243 RGIYFGRNKGLSLPITFSVDGLQNLR----DLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPES-IIQLSNLERLF 317 (570)
Q Consensus 243 ~~L~l~~n~~~~~~~~~~~~~l~~L~----~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~ 317 (570)
+.|++++|+ +....+..+..+++|+ .|++++|.+++++.......+|+.|+|++|.++.+|.. +..+++|+.|+
T Consensus 152 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 152 EHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred CEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 666766666 3333334455566666 89999999999877666667999999999999988764 58899999999
Q ss_pred ccCccccC
Q 044933 318 IRYCERLQ 325 (570)
Q Consensus 318 Ls~~~~l~ 325 (570)
+++|+...
T Consensus 231 l~~N~~~c 238 (276)
T 2z62_A 231 LHTNPWDC 238 (276)
T ss_dssp CCSSCBCC
T ss_pred ccCCcccc
Confidence 99987543
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=4.2e-25 Score=241.98 Aligned_cols=228 Identities=15% Similarity=0.119 Sum_probs=117.7
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCc-chhhcCCCcCceeccccccCc--cCCchhccCCC
Q 044933 165 IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRL-PEELGNLEALDILHAIGTSIT--EVPPSIVRLKR 241 (570)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~l~~n~i~--~l~~~l~~l~~ 241 (570)
+..+++|+.|+++++ ....+|..+..+++|++|++++|...... +..+..+++|+.|+++ +.+. .++.....+++
T Consensus 266 l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 444455555555443 23344555555666666666666632221 2334566666666666 3333 23333455667
Q ss_pred CcEEEecc----------CCCCCCc-cccccccCCCCCeeecccCCCCC-cCcccCC-CCCccEEEcc----CCccccc-
Q 044933 242 VRGIYFGR----------NKGLSLP-ITFSVDGLQNLRDLNLNDCGIME-LPESLGL-LSSVTTLHLE----GNNFERI- 303 (570)
Q Consensus 242 L~~L~l~~----------n~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l~~-l~~L~~L~L~----~n~l~~l- 303 (570)
|++|++++ +...+.. ......++++|++|+++.+.+++ .+..+.. +++|+.|+++ .|.++..
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 77777773 3222221 22223456777777776666665 2333333 6677777775 4455543
Q ss_pred -----CccccCCCCcCEEcccCccc-cC-----cCCCCCcccceecccccccCC-cCCCCCCCCCccccceeeccCCccc
Q 044933 304 -----PESIIQLSNLERLFIRYCER-LQ-----SLPKLPCNLLSLDAHHCTALE-SLPGLFPSSDESYLRTLYLSDNFKL 371 (570)
Q Consensus 304 -----p~~l~~l~~L~~L~Ls~~~~-l~-----~lp~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~~~~L 371 (570)
+..+..+++|++|++++|.. +. .+....++|+.|++++|..-. .++.. ...+++|+.|++++|. +
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~~~~L~~L~l~~n~-l 500 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF--SRGCPNLQKLEMRGCC-F 500 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH--HTCCTTCCEEEEESCC-C
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH--HhcCcccCeeeccCCC-C
Confidence 22355577777777765542 11 122234567777777664211 01111 1234667777777773 3
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 044933 372 DRNEIRGIVKGALQKIQLLATARLREAREK 401 (570)
Q Consensus 372 ~~~~i~~~~~~~l~~l~~L~~l~l~~n~~~ 401 (570)
++.. .+.....+++|+.+++++|+++
T Consensus 501 ~~~~----~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 501 SERA----IAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp BHHH----HHHHHHHCSSCCEEEEESCBCC
T ss_pred cHHH----HHHHHHhcCccCeeECcCCcCC
Confidence 2221 2223345566666666666543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.5e-20 Score=184.73 Aligned_cols=196 Identities=24% Similarity=0.312 Sum_probs=147.3
Q ss_pred CCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCC
Q 044933 125 LLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGC 203 (570)
Q Consensus 125 ~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 203 (570)
..++++++++. ++.+|.....++++|++++|.++.++. .+..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 34556665533 445565555677788888888887775 5788888888888888766555555677888888888888
Q ss_pred CCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC-
Q 044933 204 SNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP- 281 (570)
Q Consensus 204 ~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip- 281 (570)
.+....+..+..+++|++|++++|.++.++. .+..+++|++|++++|. +....+..+..+++|+.|++++|.+++++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 7766666677888888888888888887665 46778888888888887 33444455778888888888888888865
Q ss_pred cccCCCCCccEEEccCCcccccCc-cccCCCCcCEEcccCcc
Q 044933 282 ESLGLLSSVTTLHLEGNNFERIPE-SIIQLSNLERLFIRYCE 322 (570)
Q Consensus 282 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~~~ 322 (570)
..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 457888888888888888887765 46778888888888875
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.9e-21 Score=186.23 Aligned_cols=203 Identities=18% Similarity=0.176 Sum_probs=157.1
Q ss_pred CCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCC-CCCcCCcccCCCCCCCEEEEcC-CCCCCCcchhh
Q 044933 137 LKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCK-SLKSLPSGLCKLKSLDVLIIDG-CSNLQRLPEEL 213 (570)
Q Consensus 137 ~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~-~~~~lp~~l~~l~~L~~L~L~~-~~~~~~~p~~l 213 (570)
++.+|. ...++++|++++|.++.+|. .+..+++|++|++++|+ +.+..+..+.++++|++|++++ |.+.+..+..+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 667777 55688899999999998887 68889999999999997 5555555788899999999998 66655555678
Q ss_pred cCCCcCceeccccccCccCCchhccCCCCc---EEEeccCCCCCCccccccccCCCCC-eeecccCCCCCcCcccCCCCC
Q 044933 214 GNLEALDILHAIGTSITEVPPSIVRLKRVR---GIYFGRNKGLSLPITFSVDGLQNLR-DLNLNDCGIMELPESLGLLSS 289 (570)
Q Consensus 214 ~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~---~L~l~~n~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~ip~~l~~l~~ 289 (570)
..+++|++|++++|.++.+|. +..+++|+ .|++++|..+....+..+.++++|+ .|++++|.++.+|......++
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCE
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCC
Confidence 889999999999999998887 77888887 9999998325555556688888999 999999999888765444488
Q ss_pred ccEEEccCCc-ccccC-ccccCC-CCcCEEcccCccccCcCCC-CCcccceeccccc
Q 044933 290 VTTLHLEGNN-FERIP-ESIIQL-SNLERLFIRYCERLQSLPK-LPCNLLSLDAHHC 342 (570)
Q Consensus 290 L~~L~L~~n~-l~~lp-~~l~~l-~~L~~L~Ls~~~~l~~lp~-~~~~L~~L~l~~c 342 (570)
|+.|+|++|. ++.+| ..+..+ ++|+.|++++|+. +.+|. .+++|+.|++.++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCTTCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChhHhccCceeeccCc
Confidence 9999999994 88885 457778 8899999988654 34443 3555666655554
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=4.2e-24 Score=234.04 Aligned_cols=266 Identities=16% Similarity=0.118 Sum_probs=171.3
Q ss_pred cCCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCC-----CCCCCccEEEecCcCCCcCChhccCCCCCC
Q 044933 99 HLNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPE-----ISPGNITTMHLDGTALEELPSSIECLSKLS 172 (570)
Q Consensus 99 ~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~-----~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~ 172 (570)
.+++|++|++++|.+.+ +|..+ .+++|+.|+++++......+. ...++|+.|+++++....+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 44555555555544322 33333 455555555554222111111 111688889998887778888888999999
Q ss_pred EEeccCCCCCCcCC-cccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccc-----------ccCc--cCCchhcc
Q 044933 173 HLGLADCKSLKSLP-SGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIG-----------TSIT--EVPPSIVR 238 (570)
Q Consensus 173 ~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~-----------n~i~--~l~~~l~~ 238 (570)
+|++++|.+..... ..+.++++|++|+++++.....++.....+++|++|++++ +.++ .++.....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999998543322 3467899999999985433334455557788999999993 4555 23344566
Q ss_pred CCCCcEEEeccCCCCCCccccccc-cCCCCCeeecc----cCCCCCcC------cccCCCCCccEEEccCCc--cc-ccC
Q 044933 239 LKRVRGIYFGRNKGLSLPITFSVD-GLQNLRDLNLN----DCGIMELP------ESLGLLSSVTTLHLEGNN--FE-RIP 304 (570)
Q Consensus 239 l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~Ls----~n~l~~ip------~~l~~l~~L~~L~L~~n~--l~-~lp 304 (570)
+++|+.|+++.+. ++......+. .+++|+.|+++ .|.+++.| ..+..+++|+.|+|+.|. ++ ..+
T Consensus 377 ~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 8999999997776 4444444444 48899999997 55676543 335678999999997644 54 222
Q ss_pred ccc-cCCCCcCEEcccCccccC-cC---CCCCcccceecccccccCCc--CCCCCCCCCccccceeeccCCc
Q 044933 305 ESI-IQLSNLERLFIRYCERLQ-SL---PKLPCNLLSLDAHHCTALES--LPGLFPSSDESYLRTLYLSDNF 369 (570)
Q Consensus 305 ~~l-~~l~~L~~L~Ls~~~~l~-~l---p~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~L~~L~l~~~~ 369 (570)
..+ ..+++|++|+|++|+... .+ ....++|+.|++++|. +.. ++.. ...+++|+.|++++|.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~--~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA--VTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH--HHHCSSCCEEEEESCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH--HHhcCccCeeECcCCc
Confidence 223 458899999999887432 12 2345789999999987 332 1111 1235679999999883
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.6e-20 Score=186.47 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEE
Q 044933 50 HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKEL 129 (570)
Q Consensus 50 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L 129 (570)
.+++++++++++++++.+|.++. ++++.|++++|. +++++...+ ..+++|++|+|++|.+.+ ++....+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~-~~~~~~l------ 76 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATL-MPYTRLTQLNLDRAELTK-LQVDGTL------ 76 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGG-TTCTTCCEEECTTSCCCE-EECCSCC------
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHh-hcCCCCCEEECCCCccCc-ccCCCCC------
Confidence 34556666666666665555442 455556665544 444444444 555555555555544322 1111122
Q ss_pred eeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCC
Q 044933 130 DLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSN 205 (570)
Q Consensus 130 ~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 205 (570)
++|++|++++|.++.+|..+..+++|++|++++|++.+..|..+.++++|++|++++|.+
T Consensus 77 ----------------~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 77 ----------------PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp ----------------TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred ----------------CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 234444444444555555555555555555555554443334444444444444444433
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.7e-20 Score=181.24 Aligned_cols=197 Identities=21% Similarity=0.238 Sum_probs=140.2
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
.+.+.++++++.++.+|..+ +++|++|+|++|+++.++. .+..+++|++|++++|. +++++...| ..+++|++|+|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~-~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIF-KELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTT-SSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhh-cCCCCCCEEEC
Confidence 56788999999998888766 4788899999998888765 67888888888888865 777776666 77888888888
Q ss_pred cCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCC
Q 044933 109 SGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLP 186 (570)
Q Consensus 109 ~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp 186 (570)
++|.+.+..+..+ .+++|++|++++|. ++.++. .+..+++|++|++++|.+.+..+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQ----------------------LKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCc----------------------cCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 8887655444443 56666666666644 444433 35666677777777766555444
Q ss_pred cccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCC
Q 044933 187 SGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 187 ~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~ 251 (570)
..+..+++|++|++++|.+....+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 456667777777777766655555566677777777777777776665 35667777777777776
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=3e-20 Score=184.50 Aligned_cols=195 Identities=23% Similarity=0.247 Sum_probs=146.0
Q ss_pred CCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCC-hhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEc
Q 044933 123 LKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELP-SSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIID 201 (570)
Q Consensus 123 l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 201 (570)
++++++++++++. ++.+|....++++.|++++|.++.++ ..+..+++|++|++++|.+.+..+ ...+++|++|+++
T Consensus 9 l~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred cCCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence 4444555554422 44444444457777777777777664 458888888888888887655333 2678888888888
Q ss_pred CCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc
Q 044933 202 GCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL 280 (570)
Q Consensus 202 ~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i 280 (570)
+|.+. .+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|. +....+..+..+++|+.|+|++|+++++
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 87654 677777888888888888888887764 57788888888888888 4444455577888899999999988887
Q ss_pred Cc-ccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCcc
Q 044933 281 PE-SLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 281 p~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
|. .+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 64 4577889999999999999888888888888888888865
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.7e-21 Score=183.73 Aligned_cols=129 Identities=21% Similarity=0.251 Sum_probs=68.8
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCC---EEEEcCC-CCCCCcchhhcCCCcCc-eeccccccCccCCchhccC
Q 044933 165 IECLSKLSHLGLADCKSLKSLPSGLCKLKSLD---VLIIDGC-SNLQRLPEELGNLEALD-ILHAIGTSITEVPPSIVRL 239 (570)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~---~L~L~~~-~~~~~~p~~l~~l~~L~-~L~l~~n~i~~l~~~l~~l 239 (570)
+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.++.+|.....
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~- 177 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN- 177 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT-
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC-
Confidence 3444445555554444332 333 44444554 5666555 32222223455556666 666666655555543222
Q ss_pred CCCcEEEeccCCCCCCccccccccCCCCCeeecccCC-CCCc-CcccCCC-CCccEEEccCCcccccCccccCCCCcCEE
Q 044933 240 KRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCG-IMEL-PESLGLL-SSVTTLHLEGNNFERIPESIIQLSNLERL 316 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~i-p~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 316 (570)
. ++|+.|++++|. ++++ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|
T Consensus 178 -----------------------~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L 231 (239)
T 2xwt_C 178 -----------------------G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKEL 231 (239)
T ss_dssp -----------------------T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEE
T ss_pred -----------------------C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCcee
Confidence 2 455555555553 5554 3455666 6777777777777766654 56677777
Q ss_pred cccCcc
Q 044933 317 FIRYCE 322 (570)
Q Consensus 317 ~Ls~~~ 322 (570)
+++++.
T Consensus 232 ~l~~~~ 237 (239)
T 2xwt_C 232 IARNTW 237 (239)
T ss_dssp ECTTC-
T ss_pred eccCcc
Confidence 776653
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=188.52 Aligned_cols=219 Identities=16% Similarity=0.145 Sum_probs=159.9
Q ss_pred CCCcEEEecCCCCCCc----CCCccCCCCCCEEeeeCCCCCCCCCCCC----CCCccEEEecCcCCCcC-C----hhccC
Q 044933 101 NNLVILNLSGCKNLQS----LPARIHLKLLKELDLSGCSKLKRLPEIS----PGNITTMHLDGTALEEL-P----SSIEC 167 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~----~p~~~~l~~L~~L~Ls~~~~~~~~p~~~----~~~L~~L~L~~~~i~~l-p----~~~~~ 167 (570)
..++.|.+.++..... +.....+++|++|++++|...+..|... .++|++|+|++|.++.. + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3456666666553221 1111244557777777766555555432 25777777777777742 2 23457
Q ss_pred CCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCC--cc--hhhcCCCcCceeccccccCccCCch----hccC
Q 044933 168 LSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQR--LP--EELGNLEALDILHAIGTSITEVPPS----IVRL 239 (570)
Q Consensus 168 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~p--~~l~~l~~L~~L~l~~n~i~~l~~~----l~~l 239 (570)
+++|++|++++|.+.+..|..+.++++|++|++++|.+.+. ++ ..++.+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 88999999999998888888889999999999999986542 22 2346788999999999999866652 4678
Q ss_pred CCCcEEEeccCCCCCCccccccccC---CCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEE
Q 044933 240 KRVRGIYFGRNKGLSLPITFSVDGL---QNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERL 316 (570)
Q Consensus 240 ~~L~~L~l~~n~~~~~~~~~~~~~l---~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 316 (570)
++|++|++++|. +....|..+..+ ++|++|+|++|.++++|..+. ++|+.|+|++|+++.+|. +..+++|+.|
T Consensus 224 ~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred CCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 999999999998 444444445554 799999999999999888774 799999999999998875 6788999999
Q ss_pred cccCccc
Q 044933 317 FIRYCER 323 (570)
Q Consensus 317 ~Ls~~~~ 323 (570)
+|++|+.
T Consensus 300 ~L~~N~l 306 (310)
T 4glp_A 300 TLDGNPF 306 (310)
T ss_dssp ECSSTTT
T ss_pred ECcCCCC
Confidence 9998764
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.5e-20 Score=191.93 Aligned_cols=239 Identities=16% Similarity=0.190 Sum_probs=142.2
Q ss_pred cEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEE-EecC
Q 044933 33 RYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVIL-NLSG 110 (570)
Q Consensus 33 ~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L-~L~~ 110 (570)
+.++.+++.++.+|..+ ++++++|+|++|+|+.+|. .++++++|++|+|++|...+.++..+| .++++|+++ .+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccC
Confidence 44566666666666655 4566666666666666654 345555555555555442233333333 444444332 2222
Q ss_pred CCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcC-ChhccCCCCCCEEeccCCCCCCcCCccc
Q 044933 111 CKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEEL-PSSIECLSKLSHLGLADCKSLKSLPSGL 189 (570)
Q Consensus 111 ~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l 189 (570)
| .++.+ |..+..+++|++|++++|.+....+..+
T Consensus 90 N---------------------------------------------~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 90 N---------------------------------------------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp T---------------------------------------------TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred C---------------------------------------------cccccCchhhhhccccccccccccccccCCchhh
Confidence 2 22333 2234555566666666655544444444
Q ss_pred CCCCCCCEEEEcCCCCCCCcch-hhcCCC-cCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCC
Q 044933 190 CKLKSLDVLIIDGCSNLQRLPE-ELGNLE-ALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNL 267 (570)
Q Consensus 190 ~~l~~L~~L~L~~~~~~~~~p~-~l~~l~-~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 267 (570)
....++..|++.++..+..++. .+..+. .++.|++++|.++.++.......+|+.++++++..+....+..|.++++|
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 4555666777766555555443 344443 57888888888888888777777788888876554555545567777888
Q ss_pred CeeecccCCCCCcCcccCCCCCccEEEccCCc-ccccCccccCCCCcCEEcccCc
Q 044933 268 RDLNLNDCGIMELPESLGLLSSVTTLHLEGNN-FERIPESIIQLSNLERLFIRYC 321 (570)
Q Consensus 268 ~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~Ls~~ 321 (570)
+.|+|++|+++.+|.. .+.+|+.|.+.++. ++.+| .+..+++|+.++++++
T Consensus 205 ~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 205 VILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp SEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred chhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 8888888888877652 35566666654443 66777 4677777887777653
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=6.1e-20 Score=180.61 Aligned_cols=208 Identities=17% Similarity=0.181 Sum_probs=136.7
Q ss_pred ccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEecc
Q 044933 98 QHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLA 177 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 177 (570)
..+++|+.|++++|.+ ..++....+++|++|++++| .++.++ .+..+++|++|+++
T Consensus 38 ~~l~~L~~L~l~~~~i-~~~~~l~~l~~L~~L~l~~n----------------------~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGN----------------------KLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECTTS----------------------CCCCCG-GGTTCTTCCEEECT
T ss_pred ccccceeeeeeCCCCc-ccccccccCCCCcEEECCCC----------------------CCCCch-hhcCCCCCCEEECC
Confidence 5567777777777663 33443335555555555554 444433 46667777777777
Q ss_pred CCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCch-hccCCCCcEEEeccCCCCCCc
Q 044933 178 DCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPS-IVRLKRVRGIYFGRNKGLSLP 256 (570)
Q Consensus 178 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~l~~n~~~~~~ 256 (570)
+|.+.+..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|. ++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCcc
Confidence 7776665555667777777777777776665556667777777777777777766553 4667777777777776 3344
Q ss_pred cccccccCCCCCeeecccCCCCCcC-cccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCccccCcCCCCCcccc
Q 044933 257 ITFSVDGLQNLRDLNLNDCGIMELP-ESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLL 335 (570)
Q Consensus 257 ~~~~~~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~ 335 (570)
.+..+..+++|+.|++++|.+++++ ..+..+++|+.|+|++|.+. +.+++|+.|+++.|...+.+|.....+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 4445667777777777777777754 44677778888888877654 2345677777777777677776554444
Q ss_pred e
Q 044933 336 S 336 (570)
Q Consensus 336 ~ 336 (570)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 3
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.2e-19 Score=178.55 Aligned_cols=199 Identities=16% Similarity=0.153 Sum_probs=132.9
Q ss_pred CCccEEEecCCCCCCCCCCcCCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEec
Q 044933 30 TEVRYLHWHGYPLKLLPSNIHPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLS 109 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~ 109 (570)
++|+.|+++++.++.++....+++|++|++++|.++.++ .+..+++|++|++++|. +++++...+ ..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVF-DKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEECT
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHh-cCCcCCCEEECC
Confidence 778888888888887776667888888888888887763 67778888888888865 777776566 778888888888
Q ss_pred CCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCC-CC--CCCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCCc
Q 044933 110 GCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPE-IS--PGNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLKS 184 (570)
Q Consensus 110 ~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~-~~--~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~ 184 (570)
+|.+.+..+..+ .+++|++|++++|... .++. .+ .++|++|++++|.++.+|.. ++.+++|++|++++|.+.+.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 887665555544 6777888888776433 3332 21 15666666666666666544 45666666666666666655
Q ss_pred CCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cCCchhccC
Q 044933 185 LPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRL 239 (570)
Q Consensus 185 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~~l 239 (570)
.|..+..+++|+.|++++|+.... +++|+.|+++.|.+. .+|..++.+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 555566666666666666654332 345666666666555 455544433
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.1e-19 Score=183.43 Aligned_cols=237 Identities=23% Similarity=0.213 Sum_probs=190.6
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCc-ccCCCCCCCEE-EEcCC
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPS-GLCKLKSLDVL-IIDGC 203 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L-~L~~~ 203 (570)
++++.++ ..++.+|.....++++|+|++|.|+.+|. .|.++++|++|+|++|++.+.+|. .|.++++++++ .+.+|
T Consensus 12 ~~v~C~~-~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEES-TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecC-CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 4566665 34667776666789999999999999987 589999999999999998887764 57889998865 45556
Q ss_pred CCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCCCCCCccccccccCC-CCCeeecccCCCCCcC
Q 044933 204 SNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQ-NLRDLNLNDCGIMELP 281 (570)
Q Consensus 204 ~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~ip 281 (570)
.+....|..+..+++|++|++++|.+..+|. .+....++..+++.++..+....+..+.++. .++.|++++|++++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 6666567889999999999999999998876 4556778889999876545554455566664 6899999999999998
Q ss_pred cccCCCCCccEEEccC-CcccccCc-cccCCCCcCEEcccCccccCcCCC-CCcccceecccccccCCcCCCCCCCCCcc
Q 044933 282 ESLGLLSSVTTLHLEG-NNFERIPE-SIIQLSNLERLFIRYCERLQSLPK-LPCNLLSLDAHHCTALESLPGLFPSSDES 358 (570)
Q Consensus 282 ~~l~~l~~L~~L~L~~-n~l~~lp~-~l~~l~~L~~L~Ls~~~~l~~lp~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 358 (570)
.......+|++|++++ |.++.+|. .+..+++|++|+|++|+ ++.+|. .+.+|+.|.+.++..++.+|.. ..++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l---~~l~ 246 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTL---EKLV 246 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCT---TTCC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCc---hhCc
Confidence 8777778999999985 67899985 57899999999999975 666764 6889999999999999988853 4677
Q ss_pred ccceeeccCC
Q 044933 359 YLRTLYLSDN 368 (570)
Q Consensus 359 ~L~~L~l~~~ 368 (570)
+|+.+++.++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 8888888643
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.9e-19 Score=180.43 Aligned_cols=148 Identities=21% Similarity=0.313 Sum_probs=84.9
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcE
Q 044933 165 IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRG 244 (570)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~ 244 (570)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.++.++. +..+++|+.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccE
Confidence 4444555555555544322 22 34455555555555554333 222 5555556666666665555544 556666666
Q ss_pred EEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCcc
Q 044933 245 IYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 245 L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
|++++|.+... +. +..+++|+.|++++|.+++++. +..+++|+.|+|++|.++.++ .+..+++|+.|++++|+
T Consensus 156 L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 156 LSIGNAQVSDL--TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred EEccCCcCCCC--hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 66666653321 11 5566667777777777666554 566777777777777777666 36677777777777765
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.6e-19 Score=181.02 Aligned_cols=197 Identities=21% Similarity=0.302 Sum_probs=147.4
Q ss_pred ccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCC-CCccEEEecCcCCCcCChhccCCCCCCEEec
Q 044933 98 QHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISP-GNITTMHLDGTALEELPSSIECLSKLSHLGL 176 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L 176 (570)
..+++|++|++++|.+. .+|....+++|++|++++|.. ..++.+.. ++|++|++++|.++.++ .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 56788888888888644 456444788888888888753 44443322 78888888888888876 5778888888888
Q ss_pred cCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCc
Q 044933 177 ADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLP 256 (570)
Q Consensus 177 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~ 256 (570)
++|.+.+ ++. +..+++|++|++++|.+.+..+ ++.+++|+.|++++|.++.++. +..+++|+.|++++|.+....
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 8887655 333 7788888888888887654433 7778888888888888887776 778888888888888743322
Q ss_pred cccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCcc
Q 044933 257 ITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPES 306 (570)
Q Consensus 257 ~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~ 306 (570)
+ +..+++|+.|++++|.+++++. +..+++|+.|+|++|.++..|..
T Consensus 190 -~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 190 -P--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp -G--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred -h--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence 2 6778888888888888888763 77888888888888888776643
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=4.1e-23 Score=226.22 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=99.4
Q ss_pred CCCceEEEEecCCcccccccccccCCC------------CC-CCccEEEecCCCCCCC-CCCc--CCCCcEEEECCCC-C
Q 044933 1 MPNLRILKFYSSMNEENKCKMSYFQGP------------GF-TEVRYLHWHGYPLKLL-PSNI--HPEKLVLLEMPHS-N 63 (570)
Q Consensus 1 m~~Lr~L~l~~~~~~~~~~~~~lp~~~------------~~-~~L~~L~l~~~~l~~l-p~~~--~~~~L~~L~L~~n-~ 63 (570)
+++|+.|++.++.... .....|... .. ++|++|+++++.+... +..+ .+++|++|+|++| .
T Consensus 65 ~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFA--DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp CTTCCEEEEECSCGGG--GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred CCCceEEeccCCCchh--hcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 4689999999875210 011112221 12 7999999999986632 1222 5789999999998 5
Q ss_pred hhh--ccccccCccCCcEEccCcccCCCCCCCC---cccccCCCCcEEEecCCCCCCcCC-----Ccc-CCCCCCEEeee
Q 044933 64 IEQ--LFDSVQDYGKLNQIITAAFNFFSKIPTP---SLTQHLNNLVILNLSGCKNLQSLP-----ARI-HLKLLKELDLS 132 (570)
Q Consensus 64 l~~--l~~~~~~l~~L~~L~Ls~~~~l~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~p-----~~~-~l~~L~~L~Ls 132 (570)
+.. ++.....+++|++|++++|. +++.... .+...+++|++|++++|. +.++ ... .+++|++|+++
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecC
Confidence 554 55556689999999999987 6654432 232477899999999986 2222 112 57999999999
Q ss_pred CCCCCCCCCCCCC--CCccEEEecCc
Q 044933 133 GCSKLKRLPEISP--GNITTMHLDGT 156 (570)
Q Consensus 133 ~~~~~~~~p~~~~--~~L~~L~L~~~ 156 (570)
+|..++.++.... ++|++|+++.+
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccc
Confidence 9855444333222 57888875443
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=4e-19 Score=172.59 Aligned_cols=173 Identities=20% Similarity=0.291 Sum_probs=108.8
Q ss_pred ccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc
Q 044933 148 ITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 148 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 227 (570)
.++++++++.++.+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4455555555555555443 45666666666655555555666666666666666555555555666666666666666
Q ss_pred cCccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCc-ccCCCCCccEEEccCCcccccCc
Q 044933 228 SITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE-SLGLLSSVTTLHLEGNNFERIPE 305 (570)
Q Consensus 228 ~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~~lp~ 305 (570)
.++.++. .+..+++|++|++++|. ++...+..+..+++|+.|+|++|.+++++. .++.+++|+.|+|++|.++.+|.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 6665543 34566666666666666 333334445667777777777777777654 57777777777777777776654
Q ss_pred -cccCCCCcCEEcccCccc
Q 044933 306 -SIIQLSNLERLFIRYCER 323 (570)
Q Consensus 306 -~l~~l~~L~~L~Ls~~~~ 323 (570)
.+..+++|+.|+|++|+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSCCB
T ss_pred HHHhCCCCCCEEEeeCCce
Confidence 566777777777777653
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=3.7e-23 Score=226.52 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=106.4
Q ss_pred CCccEEEecCCCC----CCCCCC------------c-CCCCcEEEECCCCChhhc-ccccc-CccCCcEEccCcccCCCC
Q 044933 30 TEVRYLHWHGYPL----KLLPSN------------I-HPEKLVLLEMPHSNIEQL-FDSVQ-DYGKLNQIITAAFNFFSK 90 (570)
Q Consensus 30 ~~L~~L~l~~~~l----~~lp~~------------~-~~~~L~~L~L~~n~l~~l-~~~~~-~l~~L~~L~Ls~~~~l~~ 90 (570)
++|+.|++++++. ...|.. + .+++|++|+|+++.+... +..+. .+++|++|+|++|..++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 8899999999862 222222 1 578999999999988742 33443 689999999999865655
Q ss_pred CCCCcccccCCCCcEEEecCCCCCCcC----CCcc-CCCCCCEEeeeCCC-CCC--CCCCC--CCCCccEEEecCc-CCC
Q 044933 91 IPTPSLTQHLNNLVILNLSGCKNLQSL----PARI-HLKLLKELDLSGCS-KLK--RLPEI--SPGNITTMHLDGT-ALE 159 (570)
Q Consensus 91 ~~~~~~~~~l~~L~~L~L~~~~~~~~~----p~~~-~l~~L~~L~Ls~~~-~~~--~~p~~--~~~~L~~L~L~~~-~i~ 159 (570)
.....+...+++|++|+|++|.+.+.. +... .+++|++|++++|. .+. .++.+ ..++|++|+++++ .++
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 333344358999999999999854432 2222 67899999999986 111 01111 1268999999988 566
Q ss_pred cCChhccCCCCCCEEeccCC
Q 044933 160 ELPSSIECLSKLSHLGLADC 179 (570)
Q Consensus 160 ~lp~~~~~l~~L~~L~L~~~ 179 (570)
.+|..+..+++|+.|+++.+
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHhcCCcceEcccccc
Confidence 77777888899999987655
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.3e-21 Score=202.61 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=144.5
Q ss_pred cEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCc----ccccCCCCcEEEecCCCCC---CcCCCcc-----
Q 044933 54 LVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPS----LTQHLNNLVILNLSGCKNL---QSLPARI----- 121 (570)
Q Consensus 54 L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~----~~~~l~~L~~L~L~~~~~~---~~~p~~~----- 121 (570)
|+...+....+..++..+..+++|+.|+|++|. ++...... + ..+++|++|+|++|... +.+|..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 333344444455555666666666666666654 44332211 2 45666666666664321 1222221
Q ss_pred ---CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCc-----CChhccCCCCCCEEeccCCCCCCcCC----ccc
Q 044933 122 ---HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEE-----LPSSIECLSKLSHLGLADCKSLKSLP----SGL 189 (570)
Q Consensus 122 ---~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~~~lp----~~l 189 (570)
.+++|++|+|++ |.++. +|..+..+++|++|+|++|.+....+ ..+
T Consensus 89 ~l~~~~~L~~L~Ls~----------------------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 146 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSD----------------------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146 (386)
T ss_dssp HHTTCTTCCEEECCS----------------------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH
T ss_pred HHhhCCcccEEECCC----------------------CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHH
Confidence 334444444444 33333 55566667777777777776543222 223
Q ss_pred CCC---------CCCCEEEEcCCCCC-CCcc---hhhcCCCcCceeccccccCc------cCCchhccCCCCcEEEeccC
Q 044933 190 CKL---------KSLDVLIIDGCSNL-QRLP---EELGNLEALDILHAIGTSIT------EVPPSIVRLKRVRGIYFGRN 250 (570)
Q Consensus 190 ~~l---------~~L~~L~L~~~~~~-~~~p---~~l~~l~~L~~L~l~~n~i~------~l~~~l~~l~~L~~L~l~~n 250 (570)
..+ ++|++|++++|.+. ..++ ..+..+++|++|++++|.+. -++..+..+++|+.|++++|
T Consensus 147 ~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n 226 (386)
T 2ca6_A 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226 (386)
T ss_dssp HHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred HHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC
Confidence 233 67777777777665 3333 35556777777777777776 12335667777777777777
Q ss_pred CCCC---CccccccccCCCCCeeecccCCCCC-----cCccc--CCCCCccEEEccCCcccc-----cCccc-cCCCCcC
Q 044933 251 KGLS---LPITFSVDGLQNLRDLNLNDCGIME-----LPESL--GLLSSVTTLHLEGNNFER-----IPESI-IQLSNLE 314 (570)
Q Consensus 251 ~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~-----ip~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~ 314 (570)
.+.. ..++..+..+++|+.|+|++|.++. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|+
T Consensus 227 ~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 7321 3345556677778888888877775 35555 347788888888888775 67666 5577788
Q ss_pred EEcccCccc
Q 044933 315 RLFIRYCER 323 (570)
Q Consensus 315 ~L~Ls~~~~ 323 (570)
+|++++|+.
T Consensus 307 ~L~l~~N~l 315 (386)
T 2ca6_A 307 FLELNGNRF 315 (386)
T ss_dssp EEECTTSBS
T ss_pred EEEccCCcC
Confidence 888877653
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1.3e-20 Score=191.11 Aligned_cols=241 Identities=18% Similarity=0.157 Sum_probs=156.6
Q ss_pred CCcEEccCcccCCCCCCCCcccccC--CCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEe
Q 044933 76 KLNQIITAAFNFFSKIPTPSLTQHL--NNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHL 153 (570)
Q Consensus 76 ~L~~L~Ls~~~~l~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L 153 (570)
.++.++++++. +. +..+ ..+ ++++.|++++|.+.+..+....+++|++|++++
T Consensus 48 ~~~~l~l~~~~-~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~-------------------- 102 (336)
T 2ast_B 48 LWQTLDLTGKN-LH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN-------------------- 102 (336)
T ss_dssp TSSEEECTTCB-CC---HHHH-HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTT--------------------
T ss_pred hheeecccccc-CC---HHHH-HhhhhccceEEEcCCccccccchhhccCCCCCEEEccC--------------------
Confidence 36667776644 22 1222 444 667777777666555555444555555555554
Q ss_pred cCcCCCc--CChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCC--CcchhhcCCCcCceeccccc-c
Q 044933 154 DGTALEE--LPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQ--RLPEELGNLEALDILHAIGT-S 228 (570)
Q Consensus 154 ~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~l~~n-~ 228 (570)
|.++. +|..+..+++|++|++++|.+.+..+..+..+++|++|++++|..++ .++..+..+++|++|++++| .
T Consensus 103 --~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 103 --SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp --CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred --CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 44542 56667778888888888887766777777778888888888884443 35666777888888888888 7
Q ss_pred Ccc--CCchhccCC-CCcEEEeccCC--CCCCccccccccCCCCCeeecccCC-CCC-cCcccCCCCCccEEEccCCc-c
Q 044933 229 ITE--VPPSIVRLK-RVRGIYFGRNK--GLSLPITFSVDGLQNLRDLNLNDCG-IME-LPESLGLLSSVTTLHLEGNN-F 300 (570)
Q Consensus 229 i~~--l~~~l~~l~-~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-ip~~l~~l~~L~~L~L~~n~-l 300 (570)
++. ++..+..++ +|++|++++|. +....++..+..+++|+.|++++|. +++ .+..+..+++|+.|++++|. +
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 773 566677788 88888888884 2224455556778888888888887 554 56677778888888888885 3
Q ss_pred c-ccCccccCCCCcCEEcccCccccCcCCCCCcccceecccccc
Q 044933 301 E-RIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCT 343 (570)
Q Consensus 301 ~-~lp~~l~~l~~L~~L~Ls~~~~l~~lp~~~~~L~~L~l~~c~ 343 (570)
. .....+..+++|+.|++++|-....+..+...++.|+++++.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCC
T ss_pred CHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEeccc
Confidence 2 111256778888888888871111112222446666665443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=9.9e-22 Score=203.61 Aligned_cols=257 Identities=12% Similarity=0.051 Sum_probs=163.1
Q ss_pred CccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhh-----ccccccCccCCcEEccCccc--CCCCCCCCcc------
Q 044933 31 EVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQ-----LFDSVQDYGKLNQIITAAFN--FFSKIPTPSL------ 96 (570)
Q Consensus 31 ~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~~~--~l~~~~~~~~------ 96 (570)
.|++..+....+..++..+ .+++|++|+|++|.+.. ++..+..+++|++|+|++|. .+++..+..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444434444444555544 67788999999988874 44557788899999998863 2332211111
Q ss_pred cccCCCCcEEEecCCCCCC----cCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCC---
Q 044933 97 TQHLNNLVILNLSGCKNLQ----SLPARI-HLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECL--- 168 (570)
Q Consensus 97 ~~~l~~L~~L~L~~~~~~~----~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l--- 168 (570)
+..+++|++|+|++|.+.. .+|..+ .+++|++|+|++|......+ ..++..+..+
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-----------------~~l~~~l~~l~~~ 152 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-----------------AKIARALQELAVN 152 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-----------------HHHHHHHHHHhhh
Confidence 1578999999999988766 355555 67888888888765311100 0122222223
Q ss_pred ------CCCCEEeccCCCCC-CcCC---cccCCCCCCCEEEEcCCCCCC-----CcchhhcCCCcCceeccccccC----
Q 044933 169 ------SKLSHLGLADCKSL-KSLP---SGLCKLKSLDVLIIDGCSNLQ-----RLPEELGNLEALDILHAIGTSI---- 229 (570)
Q Consensus 169 ------~~L~~L~L~~~~~~-~~lp---~~l~~l~~L~~L~L~~~~~~~-----~~p~~l~~l~~L~~L~l~~n~i---- 229 (570)
++|++|++++|.+. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+
T Consensus 153 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g 232 (386)
T 2ca6_A 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232 (386)
T ss_dssp HHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred hhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH
Confidence 56666666666654 2333 345556666666666665441 1233566667777777777776
Q ss_pred -ccCCchhccCCCCcEEEeccCCCCCC---cccccc--ccCCCCCeeecccCCCCC-----cCccc-CCCCCccEEEccC
Q 044933 230 -TEVPPSIVRLKRVRGIYFGRNKGLSL---PITFSV--DGLQNLRDLNLNDCGIME-----LPESL-GLLSSVTTLHLEG 297 (570)
Q Consensus 230 -~~l~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~--~~l~~L~~L~Ls~n~l~~-----ip~~l-~~l~~L~~L~L~~ 297 (570)
..+|..+..+++|+.|++++|.+... .++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|+|++
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 35566677777788888887773322 123344 337889999999999887 77777 6689999999999
Q ss_pred CcccccC
Q 044933 298 NNFERIP 304 (570)
Q Consensus 298 n~l~~lp 304 (570)
|.++...
T Consensus 313 N~l~~~~ 319 (386)
T 2ca6_A 313 NRFSEED 319 (386)
T ss_dssp SBSCTTS
T ss_pred CcCCcch
Confidence 9988544
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=4.3e-21 Score=196.99 Aligned_cols=243 Identities=13% Similarity=0.117 Sum_probs=118.3
Q ss_pred EEecCCCCCCCCCCc--CCCCcEEEECCCCChhhcc-----ccccCcc-CCcEEccCcccCCCCCCCCcccccC-----C
Q 044933 35 LHWHGYPLKLLPSNI--HPEKLVLLEMPHSNIEQLF-----DSVQDYG-KLNQIITAAFNFFSKIPTPSLTQHL-----N 101 (570)
Q Consensus 35 L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~l~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~~~~~~~~~l-----~ 101 (570)
++++.+.+....+.+ .+.+|++|+|++|.++..+ +.+..++ +|++|+|++|. +++.....+ ..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l-~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDEL-VQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHH-HHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHH-HHHHhccCC
Confidence 344555554322222 2334666666666655443 3445555 56666665543 444433333 222 5
Q ss_pred CCcEEEecCCCCCCcCCCcc-----CC-CCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-----hccC-CC
Q 044933 102 NLVILNLSGCKNLQSLPARI-----HL-KLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-----SIEC-LS 169 (570)
Q Consensus 102 ~L~~L~L~~~~~~~~~p~~~-----~l-~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-----~~~~-l~ 169 (570)
+|++|+|++|.+.+..+..+ .+ ++|++|++++ |.++..+. .+.. .+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~----------------------N~l~~~~~~~l~~~l~~~~~ 138 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW----------------------NDFSSKSSSEFKQAFSNLPA 138 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS----------------------SCGGGSCHHHHHHHHTTSCT
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC----------------------CcCCcHHHHHHHHHHHhCCC
Confidence 55555555555433322211 12 3444444444 44443332 1223 24
Q ss_pred CCCEEeccCCCCCC----cCCcccCCCC-CCCEEEEcCCCCCCCcchh----hcCC-CcCceeccccccCcc-----CCc
Q 044933 170 KLSHLGLADCKSLK----SLPSGLCKLK-SLDVLIIDGCSNLQRLPEE----LGNL-EALDILHAIGTSITE-----VPP 234 (570)
Q Consensus 170 ~L~~L~L~~~~~~~----~lp~~l~~l~-~L~~L~L~~~~~~~~~p~~----l~~l-~~L~~L~l~~n~i~~-----l~~ 234 (570)
+|++|++++|.+.. .++..+..++ +|++|++++|.+....+.. +..+ ++|++|++++|.+.. ++.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 66666666665543 2222333343 6666666666554444332 2333 366666666666654 444
Q ss_pred hhcc-CCCCcEEEeccCCCCCCcc---ccccccCCCCCeeecccCCCCC--------cCcccCCCCCccEEEccCCccc
Q 044933 235 SIVR-LKRVRGIYFGRNKGLSLPI---TFSVDGLQNLRDLNLNDCGIME--------LPESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 235 ~l~~-l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~--------ip~~l~~l~~L~~L~L~~n~l~ 301 (570)
.+.. .++|+.|++++|.+..... ...+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 4444 2366666666666332211 2233455666666666665332 2345556666666666666655
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.9e-18 Score=167.78 Aligned_cols=177 Identities=24% Similarity=0.303 Sum_probs=150.0
Q ss_pred CCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCC
Q 044933 125 LLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGC 203 (570)
Q Consensus 125 ~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 203 (570)
..++++++++ .++.+|....++++.|+|++|.++.++. .+..+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4556666653 3556666555688888888888887765 5889999999999999988888888999999999999999
Q ss_pred CCCCCcchhhcCCCcCceeccccccCccCCch-hccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC-
Q 044933 204 SNLQRLPEELGNLEALDILHAIGTSITEVPPS-IVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP- 281 (570)
Q Consensus 204 ~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip- 281 (570)
.+.+..+..++.+++|++|++++|.++.++.. +..+++|+.|++++|. +....+..+..+++|+.|+|++|.+++++
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 98877778889999999999999999988875 5789999999999998 45555566889999999999999999975
Q ss_pred cccCCCCCccEEEccCCccccc
Q 044933 282 ESLGLLSSVTTLHLEGNNFERI 303 (570)
Q Consensus 282 ~~l~~l~~L~~L~L~~n~l~~l 303 (570)
..+..+++|+.|+|++|.+..-
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 5789999999999999998743
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=8.3e-21 Score=192.62 Aligned_cols=253 Identities=16% Similarity=0.148 Sum_probs=155.7
Q ss_pred CCCcEEEECCCCChhhccccccCc--cCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCc-CCCcc-CCCCC
Q 044933 51 PEKLVLLEMPHSNIEQLFDSVQDY--GKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQS-LPARI-HLKLL 126 (570)
Q Consensus 51 ~~~L~~L~L~~n~l~~l~~~~~~l--~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~p~~~-~l~~L 126 (570)
+..++.++++++.+. +..+..+ ++++.++++++. +++.... + ..+++|++|++++|.+... +|..+ .+++|
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE-ECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCcc-ccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 345677888877766 3445555 778888888765 6655443 3 4678888888888875544 55444 67777
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCC-CCC-cCCcccCCCCCCCEEEEcCC-
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCK-SLK-SLPSGLCKLKSLDVLIIDGC- 203 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~-~~~-~lp~~l~~l~~L~~L~L~~~- 203 (570)
++|++++|.... ..+..++.+++|++|++++|. +.+ .++..+.++++|++|++++|
T Consensus 121 ~~L~L~~~~l~~---------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 121 QNLSLEGLRLSD---------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp SEEECTTCBCCH---------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred CEEeCcCcccCH---------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 777777653211 234455666677777777763 332 24555666677777777776
Q ss_pred CCCCC-cchhhcCCC-cCceecccccc--Cc--cCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCC-
Q 044933 204 SNLQR-LPEELGNLE-ALDILHAIGTS--IT--EVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCG- 276 (570)
Q Consensus 204 ~~~~~-~p~~l~~l~-~L~~L~l~~n~--i~--~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~- 276 (570)
.+... ++..+..++ +|++|++++|. ++ .++..+..+++|+.|++++|...+...+..+..+++|++|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 33322 455566667 77777777773 32 4555666777777777777775454555566777777777777774
Q ss_pred CCC-cCcccCCCCCccEEEccCCcccccCccccCC-CCcCEEcccCccccCcCCCCCc
Q 044933 277 IME-LPESLGLLSSVTTLHLEGNNFERIPESIIQL-SNLERLFIRYCERLQSLPKLPC 332 (570)
Q Consensus 277 l~~-ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l-~~L~~L~Ls~~~~l~~lp~~~~ 332 (570)
+.. ....+..+++|+.|++++| ++. ..+..+ .+|+.|++++|+..+..|....
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCccc
Confidence 222 1235667788888888877 321 122222 2355666777666665555443
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=179.18 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=108.9
Q ss_pred CCCCEEeccCCCCCCcCCccc--CCCCCCCEEEEcCCCCCCCcc----hhhcCCCcCceeccccccCccCC-chhccCCC
Q 044933 169 SKLSHLGLADCKSLKSLPSGL--CKLKSLDVLIIDGCSNLQRLP----EELGNLEALDILHAIGTSITEVP-PSIVRLKR 241 (570)
Q Consensus 169 ~~L~~L~L~~~~~~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p----~~l~~l~~L~~L~l~~n~i~~l~-~~l~~l~~ 241 (570)
++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+ ..+..+++|++|++++|.+..++ ..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666655555555 556666666666665554333 22345566666666666666444 34556666
Q ss_pred CcEEEeccCCCCC---CccccccccCCCCCeeecccCCCCCcCc----ccCCCCCccEEEccCCccccc-CccccCC---
Q 044933 242 VRGIYFGRNKGLS---LPITFSVDGLQNLRDLNLNDCGIMELPE----SLGLLSSVTTLHLEGNNFERI-PESIIQL--- 310 (570)
Q Consensus 242 L~~L~l~~n~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~ip~----~l~~l~~L~~L~L~~n~l~~l-p~~l~~l--- 310 (570)
|++|++++|++.. ......+..+++|++|++++|.++.++. .++.+++|++|+|++|.++.+ |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 6666666665322 1112223456666666666666655433 234556666666666666644 5444444
Q ss_pred CCcCEEcccCccccCcCCC-CCcccceecccccccCCcCCCCCCCCCccccceeeccCC
Q 044933 311 SNLERLFIRYCERLQSLPK-LPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYLSDN 368 (570)
Q Consensus 311 ~~L~~L~Ls~~~~l~~lp~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~ 368 (570)
++|++|+|++|+.. .+|. .+++|+.|++++|. ++.++.. ..+++|+.|++++|
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~-l~~~~~~---~~l~~L~~L~L~~N 304 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNR-LNRAPQP---DELPEVDNLTLDGN 304 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCC-CCSCCCT---TSCCCCSCEECSST
T ss_pred CcCCEEECCCCCCC-chhhhhcCCCCEEECCCCc-CCCCchh---hhCCCccEEECcCC
Confidence 46666666665433 4443 34566666666643 3333321 24567888887766
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=1.6e-19 Score=185.29 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=173.7
Q ss_pred EEECCCCChhhc-cccccCccCCcEEccCcccCCCCCCC----CcccccCC-CCcEEEecCCCCCCcCCCcc-CC-----
Q 044933 56 LLEMPHSNIEQL-FDSVQDYGKLNQIITAAFNFFSKIPT----PSLTQHLN-NLVILNLSGCKNLQSLPARI-HL----- 123 (570)
Q Consensus 56 ~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~----~~~~~~l~-~L~~L~L~~~~~~~~~p~~~-~l----- 123 (570)
.+++++|++... |..+...++|++|+|++|. +++.+. ..+ ..++ +|++|+|++|.+....+..+ .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAF-ANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHH-HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHH-HhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 467888888854 4445555569999999976 777765 445 6777 89999999887665544433 22
Q ss_pred CCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-----hccCC-CCCCEEeccCCCCCCcCCcc----cCC-C
Q 044933 124 KLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-----SIECL-SKLSHLGLADCKSLKSLPSG----LCK-L 192 (570)
Q Consensus 124 ~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-----~~~~l-~~L~~L~L~~~~~~~~lp~~----l~~-l 192 (570)
++|++|+|++ |.++..+. .+..+ ++|++|++++|.+....+.. +.. .
T Consensus 80 ~~L~~L~Ls~----------------------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 137 (362)
T 3goz_A 80 ANVTSLNLSG----------------------NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137 (362)
T ss_dssp TTCCEEECCS----------------------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC
T ss_pred CCccEEECcC----------------------CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC
Confidence 5555555555 44554332 25555 89999999999976655544 334 3
Q ss_pred CCCCEEEEcCCCCCCC----cchhhcCCC-cCceeccccccCccCCc-----hhccC-CCCcEEEeccCCCCCCc---cc
Q 044933 193 KSLDVLIIDGCSNLQR----LPEELGNLE-ALDILHAIGTSITEVPP-----SIVRL-KRVRGIYFGRNKGLSLP---IT 258 (570)
Q Consensus 193 ~~L~~L~L~~~~~~~~----~p~~l~~l~-~L~~L~l~~n~i~~l~~-----~l~~l-~~L~~L~l~~n~~~~~~---~~ 258 (570)
++|++|++++|.+... ++..+..++ +|++|++++|.++.... .+..+ ++|+.|++++|.+.... ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 6999999999987753 344456665 89999999999985543 34455 59999999999843321 23
Q ss_pred ccccc-CCCCCeeecccCCCCCc-----CcccCCCCCccEEEccCCccc--------ccCccccCCCCcCEEcccCcccc
Q 044933 259 FSVDG-LQNLRDLNLNDCGIMEL-----PESLGLLSSVTTLHLEGNNFE--------RIPESIIQLSNLERLFIRYCERL 324 (570)
Q Consensus 259 ~~~~~-l~~L~~L~Ls~n~l~~i-----p~~l~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~Ls~~~~l 324 (570)
..+.. .++|++|+|++|.+++. ...+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+..
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 34444 45899999999999874 345678899999999999843 34456778888999999988643
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4.6e-18 Score=183.23 Aligned_cols=183 Identities=22% Similarity=0.285 Sum_probs=109.6
Q ss_pred CCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCC
Q 044933 102 NLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKS 181 (570)
Q Consensus 102 ~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 181 (570)
+|+.|+|++|.+.+ +|..+ .++|++|+|++|. ++.+| ...++|++|++++|.|+.+|. +.. +|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~-l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNA-LISLP-ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSC-CSCCC-CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCC-Ccccc-cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence 78888888887554 66644 3677777777765 44566 334577777777777777766 443 677777777665
Q ss_pred CCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCcccccc
Q 044933 182 LKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSV 261 (570)
Q Consensus 182 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 261 (570)
.+ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.+. .+|. +
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~--~lp~-~ 198 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE--SLPA-V 198 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS--SCCC-C
T ss_pred CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC--chhh-H
Confidence 44 554 46666777776665543 443 45566666666666666665 43 56666666666533 2222 2
Q ss_pred ccCCCC-------CeeecccCCCCCcCcccCCCCCccEEEccCCccc-ccCccc
Q 044933 262 DGLQNL-------RDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFE-RIPESI 307 (570)
Q Consensus 262 ~~l~~L-------~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~-~lp~~l 307 (570)
.. +| +.|+|++|.++.+|..+..+++|+.|+|++|.++ .+|..+
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 22 44 6666666666666555555666666666666654 334333
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.4e-17 Score=165.38 Aligned_cols=166 Identities=25% Similarity=0.354 Sum_probs=127.6
Q ss_pred CccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccc
Q 044933 147 NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIG 226 (570)
Q Consensus 147 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 226 (570)
+|+.|++++|.++.++. +..+++|++|++++|.+.+..+ +.++++|++|++++|.+.. ++ .++.+++|+.|++++
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 44555555555665543 6677788888888877655433 7778888888888776544 33 477888888888888
Q ss_pred ccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCcc
Q 044933 227 TSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPES 306 (570)
Q Consensus 227 n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~ 306 (570)
|.+..+ +.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++++. +..+++|+.|+|++|.++.+|.
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence 888876 4577888899999988885443 457888999999999999998766 8889999999999999998874
Q ss_pred ccCCCCcCEEcccCccc
Q 044933 307 IIQLSNLERLFIRYCER 323 (570)
Q Consensus 307 l~~l~~L~~L~Ls~~~~ 323 (570)
+..+++|+.|++++|+.
T Consensus 196 l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GTTCTTCSEEEEEEEEE
T ss_pred hccCCCCCEEECcCCcc
Confidence 88899999999998764
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.4e-17 Score=155.10 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=108.9
Q ss_pred EEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccC
Q 044933 150 TMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSI 229 (570)
Q Consensus 150 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i 229 (570)
.++.+++.++++|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4455555555555443 34566666666655544444455666666666666655544444456666666666666666
Q ss_pred ccCCch-hccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCc-ccCCCCCccEEEccCCcccccCccc
Q 044933 230 TEVPPS-IVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE-SLGLLSSVTTLHLEGNNFERIPESI 307 (570)
Q Consensus 230 ~~l~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~~lp~~l 307 (570)
+.++.. +..+++|++|++++|. +....+..+..+++|+.|++++|.+++++. .+..+++|+.|+|++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 655543 4566666666666666 333334446677777777777777777644 4677778888888887554
Q ss_pred cCCCCcCEEcccCccccCcCCCCCccc
Q 044933 308 IQLSNLERLFIRYCERLQSLPKLPCNL 334 (570)
Q Consensus 308 ~~l~~L~~L~Ls~~~~l~~lp~~~~~L 334 (570)
..+++|++|+++.|+..+.+|.....+
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 345577777777777777777655444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.6e-17 Score=178.90 Aligned_cols=183 Identities=24% Similarity=0.309 Sum_probs=102.4
Q ss_pred CCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecC
Q 044933 76 KLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDG 155 (570)
Q Consensus 76 ~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~ 155 (570)
+|+.|++++|+ ++++|.. + +++|++|+|++|.+. .+| ..+++|++|++++|. ++.+|. ...+|++|+|++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~-l---~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN-L---PPQITVLEITQNALI-SLP--ELPASLEYLDACDNR-LSTLPE-LPASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC-C---CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHh-H---cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCC-CCCcch-hhcCCCEEECCC
Confidence 56666666654 5554431 2 355666666666544 455 235666666666654 333555 333666666666
Q ss_pred cCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCch
Q 044933 156 TALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPS 235 (570)
Q Consensus 156 ~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~ 235 (570)
|.++.+|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-
Confidence 66666665 45666666666666443 444 45566666666665444 444 43 566666666666666665
Q ss_pred hccCCCC-------cEEEeccCCCCCCccccccccCCCCCeeecccCCCCC-cCccc
Q 044933 236 IVRLKRV-------RGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME-LPESL 284 (570)
Q Consensus 236 l~~l~~L-------~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-ip~~l 284 (570)
+.. +| +.|++++|.+. .+|..+..+++|+.|+|++|.+++ +|..+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC----------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 433 45 66666666633 234445556666666666666655 34433
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.4e-17 Score=161.08 Aligned_cols=175 Identities=23% Similarity=0.279 Sum_probs=131.0
Q ss_pred ccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEecc
Q 044933 98 QHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLA 177 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 177 (570)
..+++|+.|++++|.+. .++....+++|++|++++ |.++.++. +..+++|++|+++
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~~~~l~~L~~L~L~~----------------------n~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNG----------------------NKLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCS----------------------SCCCCCGG-GTTCTTCCEEECC
T ss_pred hhcCcccEEEccCCCcc-cChhHhcCCCCCEEEccC----------------------CccCCCcc-cccCCCCCEEECC
Confidence 56778888888887643 334433555555555555 45555555 6777788888888
Q ss_pred CCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCcc
Q 044933 178 DCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPI 257 (570)
Q Consensus 178 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~ 257 (570)
+|.+.+ +| .+..+++|++|++++|.+.. + ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+... .
T Consensus 99 ~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~-~ 172 (291)
T 1h6t_A 99 ENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-V 172 (291)
T ss_dssp SSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC-G
T ss_pred CCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc-h
Confidence 777544 33 37778888888888876554 2 4577788888888888888877 5688899999999999984433 2
Q ss_pred ccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCc
Q 044933 258 TFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPE 305 (570)
Q Consensus 258 ~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~ 305 (570)
+ +..+++|+.|++++|.+++++. +..+++|+.|++++|.++..|.
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred h--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 2 7889999999999999999864 8999999999999999987663
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=8.9e-17 Score=151.21 Aligned_cols=177 Identities=18% Similarity=0.151 Sum_probs=128.9
Q ss_pred EEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCC
Q 044933 128 ELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNL 206 (570)
Q Consensus 128 ~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 206 (570)
.++.+++ .+..+|....++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus 11 ~v~c~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQ-GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCC-CccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 3444442 24455554455777777777777777664 677888888888888776655556778888888888888776
Q ss_pred CCcchhhcCCCcCceeccccccCccCCch-hccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccC
Q 044933 207 QRLPEELGNLEALDILHAIGTSITEVPPS-IVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLG 285 (570)
Q Consensus 207 ~~~p~~l~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~ 285 (570)
+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|. ++...+..+..+++|+.|++++|.+. +
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------~ 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------C 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC------C
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee------c
Confidence 65556678888888888888888877664 6778888888888887 34444455778888888888888654 3
Q ss_pred CCCCccEEEccCCccc-ccCccccCCCC
Q 044933 286 LLSSVTTLHLEGNNFE-RIPESIIQLSN 312 (570)
Q Consensus 286 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 312 (570)
.+++|+.|+++.|.++ .+|.+++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4678888888888887 78877776654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=8.8e-17 Score=175.03 Aligned_cols=172 Identities=23% Similarity=0.315 Sum_probs=98.3
Q ss_pred CCCCCCEEeeeCCCCCCCCCCCCC-CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEE
Q 044933 122 HLKLLKELDLSGCSKLKRLPEISP-GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLII 200 (570)
Q Consensus 122 ~l~~L~~L~Ls~~~~~~~~p~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 200 (570)
.+++|+.|++++|. +..++.+.. ++|+.|+|++|.++.++. +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 67778888887765 344443322 566666666666666655 6666666666666665433 22 4556666666666
Q ss_pred cCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc
Q 044933 201 DGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL 280 (570)
Q Consensus 201 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i 280 (570)
++|.+.. + ..+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+. ...+ +..+++|+.|+|++|.++++
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCC-Cchh--hccCCCCCEEECcCCCCCCC
Confidence 6665443 2 2355566666666666666555 34555566666666665522 2222 45555566666666655555
Q ss_pred CcccCCCCCccEEEccCCcccccC
Q 044933 281 PESLGLLSSVTTLHLEGNNFERIP 304 (570)
Q Consensus 281 p~~l~~l~~L~~L~L~~n~l~~lp 304 (570)
+ .+..+++|+.|+|++|.+...|
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEECCC
T ss_pred h-HHccCCCCCEEEccCCcCcCCc
Confidence 3 3555555666666655555443
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=2.1e-16 Score=150.14 Aligned_cols=150 Identities=22% Similarity=0.330 Sum_probs=94.2
Q ss_pred cEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccccc
Q 044933 149 TTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTS 228 (570)
Q Consensus 149 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~ 228 (570)
+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|+|++|.+.+..|..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 355666666666666543 567777777776665555566677777777777776666666667777777777777777
Q ss_pred CccCCch-hccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC-cccCCCCCccEEEccCCccc
Q 044933 229 ITEVPPS-IVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP-ESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 229 i~~l~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~ 301 (570)
++.+|.. +..+++|+.|++++|. +....+..+..+++|+.|+|++|.+++++ ..+..+++|+.|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7766654 3456666666666665 33333444556666666666666666643 34556666666666666554
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=164.02 Aligned_cols=170 Identities=17% Similarity=0.237 Sum_probs=89.0
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChh-cc-CCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCC
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSS-IE-CLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCS 204 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~-~~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 204 (570)
++++++++ .++.+|......++.|+|++|.|+.++.. +. .+++|+.|+|++|.+.+..+.
T Consensus 21 ~~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~----------------- 82 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE----------------- 82 (361)
T ss_dssp TEEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT-----------------
T ss_pred CEEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh-----------------
Confidence 34555553 24445544444555555555555554433 22 445555555555444443334
Q ss_pred CCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcc
Q 044933 205 NLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPES 283 (570)
Q Consensus 205 ~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~ 283 (570)
.+..+++|+.|++++|.++.++. .+..+++|+.|++++|. +....+..|.++++|+.|+|++|.++.+|..
T Consensus 83 -------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 83 -------AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp -------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred -------hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 44444445555555555444433 34445555555555555 2233344456666666666666666666544
Q ss_pred c----CCCCCccEEEccCCcccccC-ccccCCCC--cCEEcccCcc
Q 044933 284 L----GLLSSVTTLHLEGNNFERIP-ESIIQLSN--LERLFIRYCE 322 (570)
Q Consensus 284 l----~~l~~L~~L~L~~n~l~~lp-~~l~~l~~--L~~L~Ls~~~ 322 (570)
+ ..+++|+.|+|++|.|+.+| ..+..++. |+.|+|++|+
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 3 45677777777777777666 34455554 3566666654
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-16 Score=147.18 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=70.1
Q ss_pred CccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccc
Q 044933 147 NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIG 226 (570)
Q Consensus 147 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 226 (570)
+|++|++++|.++.+| .+..+++|++|++++|.+ ..+ ..+..+++|++|++++|.+.+..+..++.+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 3444444444455555 455566666666666532 222 2455556666666666555544455555555555555555
Q ss_pred ccCcc-CCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcc
Q 044933 227 TSITE-VPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNF 300 (570)
Q Consensus 227 n~i~~-l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l 300 (570)
|.++. .+..+..+++|++|++++|..... ++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|+|
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 55552 334444444444444444441111 11 2344444444444444444433 344444444444444443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=4e-16 Score=149.09 Aligned_cols=149 Identities=23% Similarity=0.256 Sum_probs=82.1
Q ss_pred ccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc
Q 044933 148 ITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 148 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 227 (570)
.+.++.+++.++.+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|.+....+..+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3455666666666665443 66666666666666655666666666666666666554333344555666666666666
Q ss_pred cCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccC-cc
Q 044933 228 SITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIP-ES 306 (570)
Q Consensus 228 ~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp-~~ 306 (570)
.++.++.. .+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+| ..
T Consensus 99 ~l~~l~~~------------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 99 QLTVLPSA------------------------VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCCTT------------------------TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred cCCccChh------------------------HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 65555432 233444444455555555555555555555555555555555444 23
Q ss_pred ccCCCCcCEEcccCcc
Q 044933 307 IIQLSNLERLFIRYCE 322 (570)
Q Consensus 307 l~~l~~L~~L~Ls~~~ 322 (570)
+..+++|+.|++++|+
T Consensus 155 ~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred HhCCCCCCEEEeeCCC
Confidence 4445555555555543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=147.44 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=73.2
Q ss_pred EEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCC-cccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccccc
Q 044933 150 TMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLP-SGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTS 228 (570)
Q Consensus 150 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~ 228 (570)
.++++++.++++|..+. ..+++|++++|.+.+..| ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44455555555554332 234455555555443322 224445555555555544443333445555555555555555
Q ss_pred CccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCccc
Q 044933 229 ITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 229 i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~ 301 (570)
++.++. .+..+++|++|++++|. +....+..+.++++|+.|+|++|.++++ |..+..+++|+.|+|++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 554443 23444444444444444 2222333445555555555555555554 455556666666666666554
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=9.8e-17 Score=156.76 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=125.3
Q ss_pred CccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccc
Q 044933 147 NITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIG 226 (570)
Q Consensus 147 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 226 (570)
++..++++++.+++++ .+..+++|++|++++|.+. .+| .+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 4555666677777766 5677788888888887644 445 57778888888888876554433 77888888888888
Q ss_pred ccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcccCCCCCccEEEccCCcccccCcc
Q 044933 227 TSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPES 306 (570)
Q Consensus 227 n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~ 306 (570)
|.++.+|.... ++|+.|++++|.+... ..+..+++|+.|++++|++++++ .+..+++|+.|+|++|.++.+ ..
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred CccCCcCcccc--CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH
Confidence 88887765333 8888888888874442 24778888888999888888875 678888999999999988877 56
Q ss_pred ccCCCCcCEEcccCccc
Q 044933 307 IIQLSNLERLFIRYCER 323 (570)
Q Consensus 307 l~~l~~L~~L~Ls~~~~ 323 (570)
+..+++|+.|++++|+.
T Consensus 168 l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp STTCCCCCEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCcc
Confidence 78888888888888764
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=6.8e-16 Score=168.05 Aligned_cols=173 Identities=23% Similarity=0.307 Sum_probs=96.6
Q ss_pred ccCCCCcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEecc
Q 044933 98 QHLNNLVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLA 177 (570)
Q Consensus 98 ~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 177 (570)
..+++|+.|++++|.+ ..+|....+++|+.|+|++|......+....++|+.|+|++|.++.+| .+..+++|+.|+|+
T Consensus 40 ~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred hcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 4456666666666553 334433356666666666654322222111256666666666666654 45566666666666
Q ss_pred CCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCcc
Q 044933 178 DCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPI 257 (570)
Q Consensus 178 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~ 257 (570)
+|.+.+ + ..+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.+...
T Consensus 118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred CCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence 665443 2 2355666666666666654443 455566666666666666665544 56666666666666653322
Q ss_pred ccccccCCCCCeeecccCCCCCc
Q 044933 258 TFSVDGLQNLRDLNLNDCGIMEL 280 (570)
Q Consensus 258 ~~~~~~l~~L~~L~Ls~n~l~~i 280 (570)
..+..+++|+.|+|++|.+...
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEECC
T ss_pred -hHHccCCCCCEEEccCCcCcCC
Confidence 2355666666666666665553
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.9e-16 Score=147.59 Aligned_cols=151 Identities=17% Similarity=0.271 Sum_probs=127.2
Q ss_pred ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCcc-CCchhccCCCCc
Q 044933 165 IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITE-VPPSIVRLKRVR 243 (570)
Q Consensus 165 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~-l~~~l~~l~~L~ 243 (570)
...+++|+.|++++|.+. .+| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|.++. .+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 366789999999998865 666 688899999999999843 333 478889999999999999984 677889999999
Q ss_pred EEEeccCCCCCCccccccccCCCCCeeecccCC-CCCcCcccCCCCCccEEEccCCcccccCccccCCCCcCEEcccCcc
Q 044933 244 GIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCG-IMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 244 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~ip~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~~~ 322 (570)
.|++++|. +....+..+..+++|++|++++|. ++.+| .+..+++|+.|++++|.++.++ .+..+++|++|++++|+
T Consensus 116 ~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 99999998 444456678899999999999998 77786 6888999999999999999887 78889999999999876
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=4.3e-19 Score=192.07 Aligned_cols=213 Identities=16% Similarity=0.163 Sum_probs=114.6
Q ss_pred CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc-CCCCCCE
Q 044933 50 HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI-HLKLLKE 128 (570)
Q Consensus 50 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~ 128 (570)
..++|+.|+|++|+++.+|+.++.+++|+.|+++++..+...+ . .+..+...+..|..+ .+++|+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~----ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---------L----LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---------H----HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---------H----HHHhcccccCCHHHHHHHHhccc
Confidence 5678888999999999899888889999998886543111000 0 000111222233333 4444444
Q ss_pred Ee-eeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCC
Q 044933 129 LD-LSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQ 207 (570)
Q Consensus 129 L~-Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 207 (570)
|+ ++.+. + .+|+.+.+++|.++.+|.. .|+.|++++|.+.+ +|. +.
T Consensus 414 L~~l~~n~-~--------~~L~~l~l~~n~i~~l~~~-----~L~~L~Ls~n~l~~-lp~-~~----------------- 460 (567)
T 1dce_A 414 VDPMRAAY-L--------DDLRSKFLLENSVLKMEYA-----DVRVLHLAHKDLTV-LCH-LE----------------- 460 (567)
T ss_dssp HCGGGHHH-H--------HHHHHHHHHHHHHHHHHHT-----TCSEEECTTSCCSS-CCC-GG-----------------
T ss_pred Ccchhhcc-c--------chhhhhhhhcccccccCcc-----CceEEEecCCCCCC-CcC-cc-----------------
Confidence 44 22211 0 0233333444444433321 24555555544322 332 33
Q ss_pred CcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc--CcccC
Q 044933 208 RLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL--PESLG 285 (570)
Q Consensus 208 ~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i--p~~l~ 285 (570)
.+++|+.|++++|.++.+|..++.+++|+.|++++|.+.. +| .++.+++|+.|+|++|.++++ |..++
T Consensus 461 -------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 461 -------QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp -------GGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred -------ccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 3444444444444444444445555555555555555322 22 456666677777777777775 67777
Q ss_pred CCCCccEEEccCCcccccCccc----cCCCCcCEEcc
Q 044933 286 LLSSVTTLHLEGNNFERIPESI----IQLSNLERLFI 318 (570)
Q Consensus 286 ~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~L 318 (570)
.+++|+.|+|++|.++.+|+.+ ..+++|+.|++
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777777777777777665433 23677777753
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=4.2e-16 Score=159.62 Aligned_cols=176 Identities=21% Similarity=0.225 Sum_probs=130.7
Q ss_pred CcEEEecCCCCCCcCCCccCCCCCCEEeeeCCCCCCCCCCCC---CCCccEEEecCcCCCcCCh-hccCCCCCCEEeccC
Q 044933 103 LVILNLSGCKNLQSLPARIHLKLLKELDLSGCSKLKRLPEIS---PGNITTMHLDGTALEELPS-SIECLSKLSHLGLAD 178 (570)
Q Consensus 103 L~~L~L~~~~~~~~~p~~~~l~~L~~L~Ls~~~~~~~~p~~~---~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~ 178 (570)
-+.++++++. +..+|..+ .+.++.|+|++|......+..+ .++|++|+|++|.|+.++. .+..+++|++|+|++
T Consensus 20 ~~~l~c~~~~-l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQ-LPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSC-CSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3688999876 55577655 3468999999987544434332 3799999999999999885 589999999999999
Q ss_pred CCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccc
Q 044933 179 CKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPIT 258 (570)
Q Consensus 179 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~ 258 (570)
|++....+..+.++++|++|+|++|.+....|..+..+++|+.|++++|.++.+|..+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-------------------- 157 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK-------------------- 157 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc--------------------
Confidence 998777777788999999999999988777778888888888888888888887764310
Q ss_pred cccccCCCCCeeecccCCCCCcC-cccCCCCC--ccEEEccCCccc
Q 044933 259 FSVDGLQNLRDLNLNDCGIMELP-ESLGLLSS--VTTLHLEGNNFE 301 (570)
Q Consensus 259 ~~~~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~--L~~L~L~~n~l~ 301 (570)
.+..+++|+.|+|++|.++.+| ..+..++. |+.|+|++|.+.
T Consensus 158 -~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 -DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 0134555666666666666654 34455555 367777777765
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=9.2e-17 Score=156.95 Aligned_cols=171 Identities=21% Similarity=0.249 Sum_probs=96.8
Q ss_pred CCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEe
Q 044933 51 PEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELD 130 (570)
Q Consensus 51 ~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ 130 (570)
+.+++.++++++.++.++ .+..+++|+.|++++|. ++.++ .+ ..+++|++|+|++|.+.+. +....+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~--~l-~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA--GM-QFFTNLKELHLSHNQISDL-SPLKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT--TG-GGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch--HH-hhCCCCCEEECCCCccCCC-hhhccCCCCCEEE
Confidence 445555566666666555 45566666666666654 55554 34 5566666666666654432 3222566666666
Q ss_pred eeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcc
Q 044933 131 LSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLP 210 (570)
Q Consensus 131 Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 210 (570)
+++|. ++.+|.....+|++|++++|.++.++ .+..+++|+.|++++|++.+. + .+..+++|+.|++++|.+.+.
T Consensus 92 L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 92 VNRNR-LKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CCSSC-CSCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCCCc-cCCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 66653 33343333356666666666666664 366667777777777664432 2 455566666666666555443
Q ss_pred hhhcCCCcCceeccccccCccCC
Q 044933 211 EELGNLEALDILHAIGTSITEVP 233 (570)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~i~~l~ 233 (570)
..+..+++|+.|++++|.+...|
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCC
T ss_pred HHhccCCCCCEEeCCCCcccCCc
Confidence 34555555555555555555433
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=2.6e-15 Score=143.45 Aligned_cols=150 Identities=22% Similarity=0.257 Sum_probs=112.5
Q ss_pred CCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcC-ChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCC
Q 044933 126 LKELDLSGCSKLKRLPEISPGNITTMHLDGTALEEL-PSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCS 204 (570)
Q Consensus 126 L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 204 (570)
-+.++.++ ..++.+|....++|++|+|++|.++.+ |..+..+++|++|+|++|.+....+..+.++++|++|+|++|.
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 34566655 346666665667888999999999987 5568899999999999999766555667899999999999998
Q ss_pred CCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcC-cc
Q 044933 205 NLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELP-ES 283 (570)
Q Consensus 205 ~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip-~~ 283 (570)
+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|. ++.++ ..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-------------------------l~~~~~~~ 154 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-------------------------LKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-------------------------CCCCCTTT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-------------------------CCccCHHH
Confidence 87766677889999999999999999888776666666665555555 44433 34
Q ss_pred cCCCCCccEEEccCCccc
Q 044933 284 LGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 284 l~~l~~L~~L~L~~n~l~ 301 (570)
+..+++|+.|+|++|.+.
T Consensus 155 ~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECTTSCBC
T ss_pred HhCCCCCCEEEeeCCCcc
Confidence 555666666666666654
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=143.68 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=124.4
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh--hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCC
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS--SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCS 204 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 204 (570)
++++++++. ++.+|......+++|+|++|.++.++. .+..+++|++|++++|.+.+..+..+.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 466666643 555666556678888888888888743 37889999999999998887777789999999999999998
Q ss_pred CCCCcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC
Q 044933 205 NLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME 279 (570)
Q Consensus 205 ~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 279 (570)
+.+..+..+..+++|++|++++|.+..+ |..+..+++|+.|++++|. ++...+..+..+++|+.|+|++|.+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8887778889999999999999999976 5678889999999999998 555556778899999999999998764
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.5e-18 Score=187.80 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=135.5
Q ss_pred CCccEEEecCcCCCcCChhccCCCCCCEEeccCCC-------------CCCcCCcccCCCCCCCEEE-EcCCCCCCCcch
Q 044933 146 GNITTMHLDGTALEELPSSIECLSKLSHLGLADCK-------------SLKSLPSGLCKLKSLDVLI-IDGCSNLQRLPE 211 (570)
Q Consensus 146 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~-------------~~~~lp~~l~~l~~L~~L~-L~~~~~~~~~p~ 211 (570)
++|+.|+|++|.++.+|..++.+++|+.|++++|. ..+..|..+.++++|+.|+ ++.+.. ..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chhhh
Confidence 57888899999999999999999999999997764 4556667777788888877 443321 11111
Q ss_pred ------hhcC--CCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcc
Q 044933 212 ------ELGN--LEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPES 283 (570)
Q Consensus 212 ------~l~~--l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~ 283 (570)
.+.. ...|+.|++++|.++.+|. +..+++|+.|++++|.+. .+|..++.+++|+.|+|++|.++++| .
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 0111 1258888888888888887 888888899999888854 55677888888999999988888887 7
Q ss_pred cCCCCCccEEEccCCccccc--CccccCCCCcCEEcccCccccCc
Q 044933 284 LGLLSSVTTLHLEGNNFERI--PESIIQLSNLERLFIRYCERLQS 326 (570)
Q Consensus 284 l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~Ls~~~~l~~ 326 (570)
++.+++|+.|+|++|.|+.+ |..+..+++|+.|+|++|+..+.
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 88888899999988888877 78888888888888888764433
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=3.2e-15 Score=141.88 Aligned_cols=151 Identities=19% Similarity=0.257 Sum_probs=122.8
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCC
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSN 205 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 205 (570)
+.++++++ .++.+|....++++.|++++|.|+.++. .+..+++|++|+|++|.+.+..|..+.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45555553 3566666555688888888888888876 588899999999999998888888899999999999999887
Q ss_pred CCCcchhhcCCCcCceeccccccCccCC-chhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC
Q 044933 206 LQRLPEELGNLEALDILHAIGTSITEVP-PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME 279 (570)
Q Consensus 206 ~~~~p~~l~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 279 (570)
....+..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|. ++...+..+..+++|+.|+|++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7665666788999999999999999764 578889999999999998 444555668889999999999998754
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=4.2e-15 Score=134.65 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=55.6
Q ss_pred CCCCEEeccCCCCC-CcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCcc-CCchhccCCCCcEEE
Q 044933 169 SKLSHLGLADCKSL-KSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITE-VPPSIVRLKRVRGIY 246 (570)
Q Consensus 169 ~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~-l~~~l~~l~~L~~L~ 246 (570)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.. +|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555443 34444444455555555555443322 334444444444444444443 333333344444444
Q ss_pred eccCCCCCCccccccccCCCCCeeecccCCCCCcCc----ccCCCCCccEEEccCCcccccC
Q 044933 247 FGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE----SLGLLSSVTTLHLEGNNFERIP 304 (570)
Q Consensus 247 l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~----~l~~l~~L~~L~L~~n~l~~lp 304 (570)
+++|.+.....+..+..+++|+.|++++|.++++|. .+..+++|+.|++++|.+.++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 444432221111223333444444444444443332 3344444444444444444333
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=4.3e-16 Score=173.71 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=109.7
Q ss_pred cCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCcccccccc
Q 044933 184 SLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDG 263 (570)
Q Consensus 184 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 263 (570)
..|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcC
Confidence 55677888888889999888765 6777777889999999999999999988999999999999999854 55777889
Q ss_pred CCCCCeeecccCCCCCcCcccCCCCCccEEEccCCccc-ccCccccCCC-CcCEEcccCccccCcCCCCCcccceecccc
Q 044933 264 LQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFE-RIPESIIQLS-NLERLFIRYCERLQSLPKLPCNLLSLDAHH 341 (570)
Q Consensus 264 l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~Ls~~~~l~~lp~~~~~L~~L~l~~ 341 (570)
+++|++|+|++|.++.+|..++.+++|+.|+|++|.++ .+|..+..+. .+..|+|++|.....+| ..+..|+++.
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~ 368 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINT 368 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC--------
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeec
Confidence 99999999999999889988999999999999999988 4455544332 22346788877655544 4566677665
Q ss_pred c
Q 044933 342 C 342 (570)
Q Consensus 342 c 342 (570)
+
T Consensus 369 n 369 (727)
T 4b8c_D 369 D 369 (727)
T ss_dssp -
T ss_pred c
Confidence 5
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=6.9e-15 Score=133.23 Aligned_cols=136 Identities=18% Similarity=0.143 Sum_probs=116.2
Q ss_pred CCccEEEecCcCCC--cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceec
Q 044933 146 GNITTMHLDGTALE--ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILH 223 (570)
Q Consensus 146 ~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 223 (570)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57888888888888 7888888999999999999986655 6788999999999999998887888888899999999
Q ss_pred cccccCccCC--chhccCCCCcEEEeccCCCCCCccc---cccccCCCCCeeecccCCCCCcCccc
Q 044933 224 AIGTSITEVP--PSIVRLKRVRGIYFGRNKGLSLPIT---FSVDGLQNLRDLNLNDCGIMELPESL 284 (570)
Q Consensus 224 l~~n~i~~l~--~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~ip~~l 284 (570)
+++|.++.++ ..+..+++|+.|++++|.+. ...+ ..+..+++|+.|++++|.+.++|++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 9999999876 68889999999999999843 3333 46889999999999999999887653
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=8.4e-15 Score=129.83 Aligned_cols=125 Identities=21% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCC-CCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeec
Q 044933 194 SLDVLIIDGCSNL-QRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNL 272 (570)
Q Consensus 194 ~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L 272 (570)
+|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+ ....+..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCC-CSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcc-cchHHHHhhhCCCCCEEEC
Confidence 3444444444333 23344444444444444444444444 3445555555555555552 2224444556777777777
Q ss_pred ccCCCCCcC--cccCCCCCccEEEccCCcccccCc----cccCCCCcCEEcccC
Q 044933 273 NDCGIMELP--ESLGLLSSVTTLHLEGNNFERIPE----SIIQLSNLERLFIRY 320 (570)
Q Consensus 273 s~n~l~~ip--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~Ls~ 320 (570)
++|.+++++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777753 677788888888888888887765 577788888888763
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.1e-15 Score=168.14 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=93.6
Q ss_pred CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccc
Q 044933 146 GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAI 225 (570)
Q Consensus 146 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 225 (570)
..|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..++.+++|++|+|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 5677777777777777777777777777777777755 67777777777777777777755 667777777777777777
Q ss_pred cccCccCCchhccCCCCcEEEeccCCCCCCccccccccCC-CCCeeecccCCCCC-cCcccCCCCCccEEEccCC
Q 044933 226 GTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQ-NLRDLNLNDCGIME-LPESLGLLSSVTTLHLEGN 298 (570)
Q Consensus 226 ~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~L~~n 298 (570)
+|.++.+|..+..+++|+.|+|++|. ++...+..+..+. .+..|+|++|.++. +| ..|+.|+++.|
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 77777777777777777777777777 4444444443332 12246677777765 33 34555666665
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=5.9e-14 Score=141.71 Aligned_cols=277 Identities=14% Similarity=0.069 Sum_probs=154.8
Q ss_pred CCccEEEecCCCCC-CCCCCcC-CCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCccccc--------
Q 044933 30 TEVRYLHWHGYPLK-LLPSNIH-PEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQH-------- 99 (570)
Q Consensus 30 ~~L~~L~l~~~~l~-~lp~~~~-~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~-------- 99 (570)
++++.|.++|.--. .+..... +++|++|+|++|++......-+.++.++.+.+..+ .++..+| .+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF-~~~~~~~~~g 99 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAF-SNVVNGVTKG 99 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTT-EEEETTEEEE
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHh-cccccccccc
Confidence 56677777653110 0000001 56677777777777621111112222333333322 2444444 55
Q ss_pred CCCCcEEEecCCCCCCcCCCcc-CCCCCCEEeeeCCCCCCCCCCCCCCC--ccEEEecCc----CCCcCC-hhccCCCCC
Q 044933 100 LNNLVILNLSGCKNLQSLPARI-HLKLLKELDLSGCSKLKRLPEISPGN--ITTMHLDGT----ALEELP-SSIECLSKL 171 (570)
Q Consensus 100 l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~Ls~~~~~~~~p~~~~~~--L~~L~L~~~----~i~~lp-~~~~~l~~L 171 (570)
+++|+.|+|.+ .+...-+..+ ++++|+.|+++++.....-+..+... +..+.+..+ ....+. ..+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 3222222223 56666666666544322222222212 222222211 011111 123344455
Q ss_pred C-EEeccCCCCCCcCCcc----cCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEE
Q 044933 172 S-HLGLADCKSLKSLPSG----LCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGI 245 (570)
Q Consensus 172 ~-~L~L~~~~~~~~lp~~----l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L 245 (570)
+ .+.+.... .++.. -....+++.+.+.+.-...........+++|+.+++++|.++.++. +|.++++|+.+
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 4 33333221 12211 1134566667666542211111122247899999999999998877 67889999999
Q ss_pred EeccCCCCCCccccccccCCCCC-eeecccCCCCCc-CcccCCCCCccEEEccCCcccccCc-cccCCCCcCEEcc
Q 044933 246 YFGRNKGLSLPITFSVDGLQNLR-DLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIPE-SIIQLSNLERLFI 318 (570)
Q Consensus 246 ~l~~n~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 318 (570)
++.+| +......+|.++++|+ .+++.+ .++.+ +.+|.++++|+.|++++|.++.|+. .|.++++|+.++.
T Consensus 256 ~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99887 4555667789999999 999988 78887 5789999999999999999998874 7888999998864
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=4.1e-14 Score=125.34 Aligned_cols=125 Identities=20% Similarity=0.234 Sum_probs=63.5
Q ss_pred CccEEEecCcCCC--cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecc
Q 044933 147 NITTMHLDGTALE--ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHA 224 (570)
Q Consensus 147 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 224 (570)
+++.|++++|.++ .+|..+..+++|++|++++|.+.+. ..+.++++|++|++++|.+.+.+|..++.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------- 86 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK--------- 86 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH---------
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh---------
Confidence 4455555555554 4555455555555555555544333 33444555555555554444434444444
Q ss_pred ccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCc----ccCCCCCccEEEcc
Q 044933 225 IGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE----SLGLLSSVTTLHLE 296 (570)
Q Consensus 225 ~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~----~l~~l~~L~~L~L~ 296 (570)
+++|++|++++|.+.....+..+..+++|++|++++|.+++++. .+..+++|+.|+++
T Consensus 87 --------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 --------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 44555555555542222223345555666666666666655543 45666666666654
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=4.2e-13 Score=124.43 Aligned_cols=124 Identities=22% Similarity=0.314 Sum_probs=96.3
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCC
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNL 206 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 206 (570)
++++++++. ++.+|.....+|++|++++|.|+.+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 456665543 5566655556888888888888888888888888999999888887777777888888888888888877
Q ss_pred CCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCC
Q 044933 207 QRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 207 ~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~ 251 (570)
...+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 7777778888888888888888887776 35667777777777766
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=2e-13 Score=126.47 Aligned_cols=127 Identities=27% Similarity=0.298 Sum_probs=69.6
Q ss_pred cEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCc-ccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc
Q 044933 149 TTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPS-GLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 149 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 227 (570)
+.++++++.++++|..+.. +|++|++++|.+.+..+. .+.++++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4555555556655554432 556666666554433332 2445555555555555544444444555555555555555
Q ss_pred cCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCccc
Q 044933 228 SITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 228 ~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~ 301 (570)
.++.++. ..+.++++|++|+|++|+++++ |..+..+++|++|+|++|.++
T Consensus 89 ~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISN------------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECS------------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCH------------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 4443332 2344556666666666666663 566667777777777777765
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.5e-14 Score=126.75 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=68.2
Q ss_pred cCceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCc--ccCCCCCccEEEc
Q 044933 218 ALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE--SLGLLSSVTTLHL 295 (570)
Q Consensus 218 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~--~l~~l~~L~~L~L 295 (570)
+|+.|++++|.++.+ ..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.++++|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 455555555555544 34555556666666666532 2222334667777777777777777765 6777888888888
Q ss_pred cCCcccccCcc----ccCCCCcCEEcccCcc
Q 044933 296 EGNNFERIPES----IIQLSNLERLFIRYCE 322 (570)
Q Consensus 296 ~~n~l~~lp~~----l~~l~~L~~L~Ls~~~ 322 (570)
++|.++.+|.. +..+++|+.|++++|.
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888877764 7778888888888765
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=5.4e-13 Score=123.55 Aligned_cols=124 Identities=20% Similarity=0.242 Sum_probs=102.6
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChh--ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCC
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSS--IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCS 204 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~--~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 204 (570)
++++++++. ++.+|.....++++|++++|.++.++.. ++.+++|++|+|++|.+.+..|..+.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 566666643 4666665556888888888999888764 8899999999999999888889999999999999999999
Q ss_pred CCCCcchhhcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCC
Q 044933 205 NLQRLPEELGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 205 ~~~~~p~~l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~ 251 (570)
+.+..+..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8887788889999999999999999855 5567777777777777777
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=120.99 Aligned_cols=126 Identities=23% Similarity=0.303 Sum_probs=82.2
Q ss_pred cEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccccc
Q 044933 149 TTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTS 228 (570)
Q Consensus 149 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~ 228 (570)
+.++++++.++.+|..+. ++|++|++++|.+. .+|..+.++++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 567777777777776543 46777777776543 455556666666666666655554444445555555555555555
Q ss_pred CccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCc-ccCCCCCccEEEccCCccc
Q 044933 229 ITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE-SLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 229 i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~ 301 (570)
++.++ +..|.++++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.
T Consensus 90 l~~i~------------------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIP------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCC------------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeC------------------------HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 44433 3446677778888888888888754 5788899999999998875
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=3.2e-12 Score=116.57 Aligned_cols=128 Identities=21% Similarity=0.263 Sum_probs=73.2
Q ss_pred ccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc
Q 044933 148 ITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 148 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 227 (570)
.+.++++++.++.+|..+ .++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..++.+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345566666666666443 246666666666654444444455555555555555444333333444555555555555
Q ss_pred cCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcc-cCCCCCccEEEccCCccc
Q 044933 228 SITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPES-LGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 228 ~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~L~~n~l~ 301 (570)
.++.++. ..+..+++|++|++++|.++++|.. +..+++|+.|+|++|.+.
T Consensus 87 ~l~~~~~------------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPN------------------------GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCT------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCH------------------------HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 4444333 2345566666677777777666543 466778888888888766
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=1.3e-12 Score=131.77 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=75.0
Q ss_pred CCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCc-eeccccccCccCC-chhccCCCCcE
Q 044933 167 CLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALD-ILHAIGTSITEVP-PSIVRLKRVRG 244 (570)
Q Consensus 167 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~-~L~l~~n~i~~l~-~~l~~l~~L~~ 244 (570)
.+++|+.|++++|.+...-+..|.++++|+.+++.++ +...-+..|.++++|+ .+++.. .++.++ .+|.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3778888888887766555667888888888888776 3333345678888888 888877 677665 46778888888
Q ss_pred EEeccCCCCCCccccccccCCCCCeeec
Q 044933 245 IYFGRNKGLSLPITFSVDGLQNLRDLNL 272 (570)
Q Consensus 245 L~l~~n~~~~~~~~~~~~~l~~L~~L~L 272 (570)
+++++|. +.......|.++++|+.++.
T Consensus 302 l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 8888777 44445566888888888763
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.1e-12 Score=119.72 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=51.7
Q ss_pred hhcCCCcCceeccccccCccCCchh-ccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcc----cCC
Q 044933 212 ELGNLEALDILHAIGTSITEVPPSI-VRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPES----LGL 286 (570)
Q Consensus 212 ~l~~l~~L~~L~l~~n~i~~l~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~----l~~ 286 (570)
.++.+++|+.|++++|.++.+|+.+ ..+++|+.|++++|.+........+..+++|+.|++++|.++.+|.. +..
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~ 138 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 138 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence 3444445555555555555444333 55555555555555532222112455666677777777776666653 667
Q ss_pred CCCccEEEccCCcccc
Q 044933 287 LSSVTTLHLEGNNFER 302 (570)
Q Consensus 287 l~~L~~L~L~~n~l~~ 302 (570)
+++|+.|++++|.+.+
T Consensus 139 l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 139 VPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCSEETTEECCHHH
T ss_pred CCccceeCCCcCCHHH
Confidence 7777777777777653
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=6.4e-15 Score=137.35 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCCCCEEeccCCCCCCcCCc------ccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCC
Q 044933 168 LSKLSHLGLADCKSLKSLPS------GLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKR 241 (570)
Q Consensus 168 l~~L~~L~L~~~~~~~~lp~------~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~ 241 (570)
...++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 34444444444444444433 55556666666666554433 44 556666666677777766666666666677
Q ss_pred CcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCc--ccCCCCCccEEEccCCccccc-Cc----------ccc
Q 044933 242 VRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPE--SLGLLSSVTTLHLEGNNFERI-PE----------SII 308 (570)
Q Consensus 242 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~--~l~~l~~L~~L~L~~n~l~~l-p~----------~l~ 308 (570)
|+.|++++|.+.. ++ .+..+++|+.|++++|.+++++. .+..+++|++|++++|.++.. |. .+.
T Consensus 95 L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 95 LEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp CSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 7777777776433 22 46677777777777777777543 677788888888888887644 22 256
Q ss_pred CCCCcCEEc
Q 044933 309 QLSNLERLF 317 (570)
Q Consensus 309 ~l~~L~~L~ 317 (570)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 677777776
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=4e-11 Score=123.93 Aligned_cols=253 Identities=10% Similarity=0.134 Sum_probs=139.9
Q ss_pred CCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCC-Ccc-CCCCCCE
Q 044933 52 EKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLP-ARI-HLKLLKE 128 (570)
Q Consensus 52 ~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~-~l~~L~~ 128 (570)
..++.+.+.. .++.++. .+.++ +|+.+.+..+ ++.+...+| .++ +|+.+.+.. . +..++ ..+ ++++|+.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF-~~~-~L~~i~lp~-~-l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAF-FNS-TVQEIVFPS-T-LEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTT-TTC-CCCEEECCT-T-CCEECSSTTTTCTTCCE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhc-CCC-CceEEEeCC-C-ccEehHHHhhCcccCCe
Confidence 3444444443 2444432 23332 4555555432 455554444 332 455555543 2 22222 222 4555555
Q ss_pred EeeeCCCCCCCCCCCC--CCCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCC
Q 044933 129 LDLSGCSKLKRLPEIS--PGNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSN 205 (570)
Q Consensus 129 L~Ls~~~~~~~~p~~~--~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 205 (570)
+++.++. ++.++... ..+|+.+.+..+ ++.|+. .|..+++|+.+++..+ +...-..+|.+ .+|+.+.+.. ..
T Consensus 185 l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 185 ADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp EECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred eecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 5555432 33332211 145555555532 555544 3666777777777653 22233334544 6677777743 22
Q ss_pred CCCcchhhcCCCcCceeccccccCc-----cCC-chhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCC
Q 044933 206 LQRLPEELGNLEALDILHAIGTSIT-----EVP-PSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIME 279 (570)
Q Consensus 206 ~~~~p~~l~~l~~L~~L~l~~n~i~-----~l~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 279 (570)
...-...|.++++|+.+++.++.+. .++ .+|.++++|+.+.+..+ +.......|.++++|+.+.|..+ ++.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 2223456677777777777766554 343 35677788888877742 34444556778888888888544 666
Q ss_pred c-CcccCCCCCccEEEccCCcccccC-ccccCC-CCcCEEcccCc
Q 044933 280 L-PESLGLLSSVTTLHLEGNNFERIP-ESIIQL-SNLERLFIRYC 321 (570)
Q Consensus 280 i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l-~~L~~L~Ls~~ 321 (570)
+ ..+|.++ +|+.+++.+|.+..++ ..+.++ .+++.|++..+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 5 5677778 8888888888877665 345555 36777777653
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=4.2e-11 Score=123.77 Aligned_cols=236 Identities=11% Similarity=0.106 Sum_probs=147.0
Q ss_pred CcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCccCCCCCCEEee
Q 044933 53 KLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARIHLKLLKELDL 131 (570)
Q Consensus 53 ~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~L 131 (570)
+|+.+.+..+ ++.+.. ++.+ .+|+.+.+.. .++.+...+| .++++|+.+++.+|.+...-...+...+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF-~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIF-YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTT-TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHh-hCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 4555555544 555543 3333 2466666554 2555555555 5566666666655543332222234456666666
Q ss_pred eCCCCCCCCCCCCC---CCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCC-
Q 044933 132 SGCSKLKRLPEISP---GNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNL- 206 (570)
Q Consensus 132 s~~~~~~~~p~~~~---~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~- 206 (570)
..+ ++.++.... .+|+.+.+..+ ++.++.. |.. .+|+.+.+.+ .+...-+.+|.++++|+.+.+.++...
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccC
Confidence 532 333332222 45666666543 4555543 444 6788888854 334444566788888888888776543
Q ss_pred ----CCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-
Q 044933 207 ----QRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL- 280 (570)
Q Consensus 207 ----~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i- 280 (570)
..-+..|.++++|+.+++. +.++.++. +|.++++|+.+.+..+ .......+|.++ +|+.+++++|.+..+
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 2334578888999999998 45776655 6788899999999665 344445668888 999999999988886
Q ss_pred CcccCCCC-CccEEEccCCcccc
Q 044933 281 PESLGLLS-SVTTLHLEGNNFER 302 (570)
Q Consensus 281 p~~l~~l~-~L~~L~L~~n~l~~ 302 (570)
...|.+++ +++.|.+..+.+..
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGGHHH
T ss_pred cccccCCCCCccEEEeCHHHHHH
Confidence 45677774 78999998877653
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=1.3e-11 Score=112.61 Aligned_cols=124 Identities=21% Similarity=0.290 Sum_probs=96.5
Q ss_pred CEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCC
Q 044933 127 KELDLSGCSKLKRLPEISPGNITTMHLDGTALEELPSS-IECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSN 205 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 205 (570)
+.++++++. ++.+|....++|++|++++|.++++|.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 455555543 5555655556888888888888887764 68889999999999987766666678899999999999888
Q ss_pred CCCcchhhcCCCcCceeccccccCccCCch-hccCCCCcEEEeccCC
Q 044933 206 LQRLPEELGNLEALDILHAIGTSITEVPPS-IVRLKRVRGIYFGRNK 251 (570)
Q Consensus 206 ~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~l~~n~ 251 (570)
.+..+..++.+++|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 776666788899999999999999888775 3567777777777776
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=2.1e-14 Score=133.88 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=106.6
Q ss_pred CCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchh
Q 044933 157 ALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSI 236 (570)
Q Consensus 157 ~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l 236 (570)
.++.+|..+..+++|++|++++|.+.+ +| .+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 456677788888888888888887655 66 7778888888888887654 67777777788888888888888876 57
Q ss_pred ccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-Cc----------ccCCCCCccEEEccCCccc
Q 044933 237 VRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PE----------SLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 237 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~----------~l~~l~~L~~L~L~~n~l~ 301 (570)
..+++|+.|++++|.+........+..+++|++|++++|.+.+. |. .+..+++|+.|+ ++.++
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888999999888854433334577888999999999988764 32 267888999887 66554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=6.7e-11 Score=107.05 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=66.3
Q ss_pred ccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc
Q 044933 148 ITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 148 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 227 (570)
.+.++++++.++++|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4566666677777776552 66777777777766666666777777777777776665555555666777777777777
Q ss_pred cCccCCc-hhccCCCCcEEEeccCC
Q 044933 228 SITEVPP-SIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 228 ~i~~l~~-~l~~l~~L~~L~l~~n~ 251 (570)
.++.++. .+..+++|+.|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7766655 35555566666665555
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=7.4e-11 Score=107.21 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=59.9
Q ss_pred cEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceecccccc
Q 044933 149 TTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTS 228 (570)
Q Consensus 149 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~ 228 (570)
+.++++++.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|.+.+..+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666666666543 566666666666655556666666666666666665544333445566666666666666
Q ss_pred CccCCch-hccCCCCcEEEeccCC
Q 044933 229 ITEVPPS-IVRLKRVRGIYFGRNK 251 (570)
Q Consensus 229 i~~l~~~-l~~l~~L~~L~l~~n~ 251 (570)
++.+|.. +..+++|+.|++++|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 6655543 4455555555555554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=6.8e-11 Score=107.44 Aligned_cols=100 Identities=20% Similarity=0.380 Sum_probs=62.3
Q ss_pred ceeccccccCccCCchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCcCcc-cCCCCCccEEEccCC
Q 044933 220 DILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPES-LGLLSSVTTLHLEGN 298 (570)
Q Consensus 220 ~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~L~~n 298 (570)
+.++++++.+..+|..+. ++|+.|++++|. +....+..+.++++|+.|+|++|+++++|.. +..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 345555555555555443 556666666666 3344445566666777777777777766543 466777777777777
Q ss_pred cccccCcc-ccCCCCcCEEcccCcc
Q 044933 299 NFERIPES-IIQLSNLERLFIRYCE 322 (570)
Q Consensus 299 ~l~~lp~~-l~~l~~L~~L~Ls~~~ 322 (570)
.|+.+|.. +..+++|++|+|++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 77766653 6667777777777654
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=1e-09 Score=113.47 Aligned_cols=282 Identities=12% Similarity=0.073 Sum_probs=185.5
Q ss_pred ccCC-CCC-CCccEEEecCCCCCCCCCC-c-CCCCcEEEECCCCChhhccc-cccCccCCcEEccCccc-----------
Q 044933 23 YFQG-PGF-TEVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFN----------- 86 (570)
Q Consensus 23 lp~~-~~~-~~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~----------- 86 (570)
+.+. |.. .+|+.+.+.. .++.++.. | .+.+|+.++++.+ ++.+++ .+.++.+|+.+.+..+-
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecc
Confidence 4443 444 8899999974 47777765 4 7899999999865 777754 57778888877665321
Q ss_pred ---------CCCCCCCCcccccCCCCcEEEecCCCCCCcCCCc-c-CCCCCCEEeeeCCCCCCCCCCCCC---CCccEEE
Q 044933 87 ---------FFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPAR-I-HLKLLKELDLSGCSKLKRLPEISP---GNITTMH 152 (570)
Q Consensus 87 ---------~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~Ls~~~~~~~~p~~~~---~~L~~L~ 152 (570)
....+...+| ..+++|+.+.+.++. ..++.. + ++.+|+.+++..+ ++.++.... ..|+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF-~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAF-ATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCSEEECCTTCCEECTTTT-TTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCC
T ss_pred cccccccCccccccchhhh-cccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceee
Confidence 0222233456 889999999997642 334433 3 7889999988764 444433222 4555555
Q ss_pred ecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccC
Q 044933 153 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEV 232 (570)
Q Consensus 153 L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l 232 (570)
+..+. ..+........+|+.+.+... ....-...+.++..|+.+.+..+. .......+..+..++.+....+.+.
T Consensus 215 ~~~~~-~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 215 FPNSL-YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CCTTC-CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC--
T ss_pred cCCCc-eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec--
Confidence 54432 223334445677888877653 233334456778888888887642 2233445667777777776654432
Q ss_pred CchhccCCCCcEEEeccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcccccC-ccccCC
Q 044933 233 PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIP-ESIIQL 310 (570)
Q Consensus 233 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l 310 (570)
...+..+.+|+.+.+..+ .......+|.++.+|+.+++..+ ++.+ ..+|.++.+|+.+.+..+ ++.|+ .++.++
T Consensus 290 ~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 125677888888888654 33344556888889999988643 6666 568888999999999766 77775 568888
Q ss_pred CCcCEEcccC
Q 044933 311 SNLERLFIRY 320 (570)
Q Consensus 311 ~~L~~L~Ls~ 320 (570)
++|+.+++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 9999998865
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=3.3e-10 Score=102.46 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=84.0
Q ss_pred CCEEeeeCCCCCCCCCCCCCCCccEEEecCcCCCcC-ChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCC
Q 044933 126 LKELDLSGCSKLKRLPEISPGNITTMHLDGTALEEL-PSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCS 204 (570)
Q Consensus 126 L~~L~Ls~~~~~~~~p~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 204 (570)
.+.++++++. ++.+|.....+|++|+|++|.|+.+ |..+..+++|++|+|++|++.+..+..+.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 3556666643 4556655556888888888888888 4568889999999999998777666677889999999999988
Q ss_pred CCCCcchhhcCCCcCceeccccccCccCC
Q 044933 205 NLQRLPEELGNLEALDILHAIGTSITEVP 233 (570)
Q Consensus 205 ~~~~~p~~l~~l~~L~~L~l~~n~i~~l~ 233 (570)
+.+..+..+..+++|+.|++++|.+...+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 77766667889999999999999887443
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.05 E-value=7.9e-09 Score=106.70 Aligned_cols=263 Identities=12% Similarity=0.088 Sum_probs=133.3
Q ss_pred CCCCCCCC-c-CCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecCCCCCCcC
Q 044933 41 PLKLLPSN-I-HPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSGCKNLQSL 117 (570)
Q Consensus 41 ~l~~lp~~-~-~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 117 (570)
.++++... | .+.+|+++.|+. .++.+.+ ++.+|.+|+.+++..+ ++.+...+| ..+++|+.+.+..+ +..+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF-~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTF-SGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTT-TTCTTCCCCCCCTT--CCEE
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhh-cccccchhhcccCc--eeee
Confidence 34555554 3 689999999985 4888865 6889999999999764 788887788 88899988777643 1222
Q ss_pred CC-cc-CCCCCCEEeeeCCCCCCCCCCC--CC-CCccEEEecCcCCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCC
Q 044933 118 PA-RI-HLKLLKELDLSGCSKLKRLPEI--SP-GNITTMHLDGTALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCK 191 (570)
Q Consensus 118 p~-~~-~l~~L~~L~Ls~~~~~~~~p~~--~~-~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~ 191 (570)
.. .+ ++..++...... ...+... .. .+|+.+.+.++ +..++. .|..+.+|+.+++..+ ....-...+.+
T Consensus 132 ~~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp CTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred cceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence 11 11 222222111111 1111111 11 45555555433 233332 3555666666665543 12222233444
Q ss_pred CCCCCEEEEcCCCC---------------------CCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEEeccC
Q 044933 192 LKSLDVLIIDGCSN---------------------LQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRN 250 (570)
Q Consensus 192 l~~L~~L~L~~~~~---------------------~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~l~~n 250 (570)
+..|+.+.+..+.. ...-...+..+..|+.+.+..+...--...+..+..++.+.....
T Consensus 207 ~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 207 CILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS
T ss_pred ccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCce
Confidence 55554444332211 111112333444455554444332222223444555555444432
Q ss_pred CCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcccccC-ccccCCCCcCEEcccC
Q 044933 251 KGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIP-ESIIQLSNLERLFIRY 320 (570)
Q Consensus 251 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~ 320 (570)
. .....+.++.+|+.+.+..+ ++.+ ..+|.++.+|+.++|..+ ++.|. .++.++++|+.+++..
T Consensus 287 ~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 287 I----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp E----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred e----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 2 11223455566666666443 4444 345566666666666432 55553 3455666666666543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.96 E-value=3.3e-11 Score=123.36 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCCCEEeccCCCCCCcCCccc-CCCCCCCEEEEcCCCCCCCcchhh-----cCCCcCceeccccccCcc-----CCchhc
Q 044933 169 SKLSHLGLADCKSLKSLPSGL-CKLKSLDVLIIDGCSNLQRLPEEL-----GNLEALDILHAIGTSITE-----VPPSIV 237 (570)
Q Consensus 169 ~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~~~p~~l-----~~l~~L~~L~l~~n~i~~-----l~~~l~ 237 (570)
.+|+.|+|++|.+.......+ ..+++|+.|+|++|.+.......+ ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555554432111111 123345555555554432211111 123445555555555441 222334
Q ss_pred cCCCCcEEEeccCCCCCC---ccccccccCCCCCeeecccCCCCC-----cCcccCCCCCccEEEccCCccc
Q 044933 238 RLKRVRGIYFGRNKGLSL---PITFSVDGLQNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 238 ~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~n~l~ 301 (570)
.+++|++|++++|.+... .+...+...++|+.|+|++|.+++ ++..+...++|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 444555555555542111 112223334445555555555443 2233333444555555555444
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=1.1e-09 Score=111.00 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=78.6
Q ss_pred EEEecCc-CCCcCChhccCCCCCCEEeccC-CCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccc
Q 044933 150 TMHLDGT-ALEELPSSIECLSKLSHLGLAD-CKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGT 227 (570)
Q Consensus 150 ~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 227 (570)
.++.+++ .++.+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566666 7788888 88888888888886 7766666677888888888888888777777777888888888888888
Q ss_pred cCccCCchhccCCCCcEEEeccCCCC
Q 044933 228 SITEVPPSIVRLKRVRGIYFGRNKGL 253 (570)
Q Consensus 228 ~i~~l~~~l~~l~~L~~L~l~~n~~~ 253 (570)
.++.+|..+.....|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88888775544334788888777743
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=3.9e-08 Score=101.46 Aligned_cols=278 Identities=10% Similarity=0.118 Sum_probs=159.3
Q ss_pred CccEEEecCCCCCCCCCC-c-CCCCcEEEECCCC---Chhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCc
Q 044933 31 EVRYLHWHGYPLKLLPSN-I-HPEKLVLLEMPHS---NIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLV 104 (570)
Q Consensus 31 ~L~~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n---~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~ 104 (570)
.|+.+.+.. .++.+... | .+.+|+.+.+..+ .++.+.+ ++..+.+|+.+.+..+ ++.+...+| ..+.+|+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF-~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF-HHCEELD 140 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT-TTCTTCC
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh-hhhcccc
Confidence 366666653 25555544 3 6677777777654 3555543 5666777777666542 566666666 7777777
Q ss_pred EEEecCCCCCCcCCCcc--CCCCCCEEeeeCCCCCCCCCC--CCCCCccEEEecCcCCCcCChhccCCCCCCEEeccCCC
Q 044933 105 ILNLSGCKNLQSLPARI--HLKLLKELDLSGCSKLKRLPE--ISPGNITTMHLDGTALEELPSSIECLSKLSHLGLADCK 180 (570)
Q Consensus 105 ~L~L~~~~~~~~~p~~~--~l~~L~~L~Ls~~~~~~~~p~--~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~ 180 (570)
.+.+... ...++... .+..|+.+.+..+ ++.+.. +....|+.+.+..+-..--...+..+.+++........
T Consensus 141 ~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 141 TVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSS
T ss_pred cccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceecccccc
Confidence 7777642 23333322 6777777777653 333322 12245666666543322223345566666666544322
Q ss_pred CCCcCCccc--------------CCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCchhccCCCCcEEE
Q 044933 181 SLKSLPSGL--------------CKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIY 246 (570)
Q Consensus 181 ~~~~lp~~l--------------~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~ 246 (570)
... ....+ .....+..+.+.. .....-...|.++.+|+.+.+..+...--..++.++++|+.+.
T Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 217 YPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIE 294 (394)
T ss_dssp SCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccceecCccccccccccccc
Confidence 111 11100 0111222222211 0001112356677888888876554333334677888888888
Q ss_pred eccCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcccccC-ccccCCCCcCEEcccCcc
Q 044933 247 FGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIP-ESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 247 l~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~ 322 (570)
+... ........|.++.+|+.+.|..+ ++.| ..+|.++.+|+.+.|..+ ++.|. .+|.++++|+.+++.++.
T Consensus 295 l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 295 FSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8643 33344556788888988888754 6665 467888889999888644 77775 567888899998888754
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=3.7e-11 Score=122.94 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=111.0
Q ss_pred CCCCCEEeccCCCCCCcCCcc----cC-CCCCCCEEEEcCCCCCCCcchh-hcCCCcCceeccccccCccCC-----chh
Q 044933 168 LSKLSHLGLADCKSLKSLPSG----LC-KLKSLDVLIIDGCSNLQRLPEE-LGNLEALDILHAIGTSITEVP-----PSI 236 (570)
Q Consensus 168 l~~L~~L~L~~~~~~~~lp~~----l~-~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~l~~n~i~~l~-----~~l 236 (570)
++.|+.|++++|.+....... +. ..++|++|+|++|.+....... ...+++|+.|++++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 457888888888765432222 22 2378999999999765432222 234568999999999987322 222
Q ss_pred -ccCCCCcEEEeccCCCCCC---ccccccccCCCCCeeecccCCCCC-----cCcccCCCCCccEEEccCCcccc-----
Q 044933 237 -VRLKRVRGIYFGRNKGLSL---PITFSVDGLQNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLEGNNFER----- 302 (570)
Q Consensus 237 -~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~n~l~~----- 302 (570)
...++|+.|++++|.+... .+...+...++|++|+|++|.+++ ++..+...++|+.|+|++|.|+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2468899999999984331 233344678899999999999885 35677778899999999999873
Q ss_pred cCccccCCCCcCEEcccCcc
Q 044933 303 IPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 303 lp~~l~~l~~L~~L~Ls~~~ 322 (570)
++..+...++|++|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 44556677899999999986
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=3.2e-09 Score=107.62 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCcchhhcCCCcCceecccc-ccCccCCc-hhccCCCCcEEEeccCCCCCCccccccccCCCCCeeeccc
Q 044933 197 VLIIDGCSNLQRLPEELGNLEALDILHAIG-TSITEVPP-SIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLND 274 (570)
Q Consensus 197 ~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~-n~i~~l~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~Ls~ 274 (570)
.++.+++..+..+|. +..+++|+.|+|++ |.+..++. .|.++++|+.|+|++|. ++...+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 345555434555666 77777777777775 77776663 56667777777777776 4445555566666777777777
Q ss_pred CCCCCcCcccCCCCCccEEEccCCccc
Q 044933 275 CGIMELPESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 275 n~l~~ip~~l~~l~~L~~L~L~~n~l~ 301 (570)
|+++.+|........|+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 776666543322223666666666665
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.80 E-value=1.7e-07 Score=96.65 Aligned_cols=276 Identities=10% Similarity=0.104 Sum_probs=177.3
Q ss_pred CCcEEEECCCCChhhccc-cccCccCCcEEccCcc--cCCCCCCCCcccccCCCCcEEEecCCCCCCcCCCcc--CCCCC
Q 044933 52 EKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAF--NFFSKIPTPSLTQHLNNLVILNLSGCKNLQSLPARI--HLKLL 126 (570)
Q Consensus 52 ~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~--~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L 126 (570)
..|+.+.++.+ ++.+.+ ++.+|.+|+.+.+..+ ..++.+...+| ..+.+|+.+.+..+ +..++... .+.+|
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILDS--VTEIDSEAFHHCEEL 139 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGTT--CSEECTTTTTTCTTC
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCCc--cceehhhhhhhhccc
Confidence 35889998865 777754 6889999999988765 23777777788 88888988887653 34444333 78899
Q ss_pred CEEeeeCCCCCCCCCCCCC---CCccEEEecCcCCCcCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCC
Q 044933 127 KELDLSGCSKLKRLPEISP---GNITTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGC 203 (570)
Q Consensus 127 ~~L~Ls~~~~~~~~p~~~~---~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 203 (570)
+.+.+... +..++.... ..|+.+.+..+ ++.+........+|+.+.+... ....-...+.++.+++.......
T Consensus 140 ~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 140 DTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCS
T ss_pred ccccccce--eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceeccccc
Confidence 99988652 333333222 57777777653 5555554334467888877653 23334455677777777766543
Q ss_pred CCCCCcchh-------------hcCCCcCceeccccccCccC-CchhccCCCCcEEEeccCCCCCCccccccccCCCCCe
Q 044933 204 SNLQRLPEE-------------LGNLEALDILHAIGTSITEV-PPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRD 269 (570)
Q Consensus 204 ~~~~~~p~~-------------l~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 269 (570)
.....-... +.....+..+.+.. .+..+ ..+|.++.+|+.+.+..+. .......|.++++|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~ 292 (394)
T 4gt6_A 216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQD 292 (394)
T ss_dssp SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCE
T ss_pred ccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc--ceecCccccccccccc
Confidence 221110000 01112222333221 22222 2367788999999987654 2233456788999999
Q ss_pred eecccCCCCCc-CcccCCCCCccEEEccCCcccccC-ccccCCCCcCEEcccCccccCcCCC----CCcccceeccccc
Q 044933 270 LNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIP-ESIIQLSNLERLFIRYCERLQSLPK----LPCNLLSLDAHHC 342 (570)
Q Consensus 270 L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~~~~l~~lp~----~~~~L~~L~l~~c 342 (570)
+.+. +.++.+ ..+|.++.+|+.+.|..+ ++.|. .+|.++.+|+.+.|..+ ++.++. ...+|+.+++.+.
T Consensus 293 i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 293 IEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 9996 456666 468899999999999764 77775 57889999999999643 555553 2356777776653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=1e-08 Score=104.01 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=69.8
Q ss_pred ccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCc-cCCchhc--cCCCCcEEEeccCC--CCCC----ccc
Q 044933 188 GLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIV--RLKRVRGIYFGRNK--GLSL----PIT 258 (570)
Q Consensus 188 ~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~l~~~l~--~l~~L~~L~l~~n~--~~~~----~~~ 258 (570)
.+..+++|+.|.+++|... .++. +. +++|+.|++..+.+. .....+. .+++|+.|+|+.+. .... .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445566666666665322 1222 22 566666666666554 1111222 56677777664311 0000 001
Q ss_pred ccc--ccCCCCCeeecccCCCCC-cCccc---CCCCCccEEEccCCcccc-----cCccccCCCCcCEEcccCcc
Q 044933 259 FSV--DGLQNLRDLNLNDCGIME-LPESL---GLLSSVTTLHLEGNNFER-----IPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 259 ~~~--~~l~~L~~L~Ls~n~l~~-ip~~l---~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~Ls~~~ 322 (570)
..+ ..+++|+.|+|++|.+.. .+..+ ..+++|++|+|+.|.++. ++..+..+++|+.|+|++|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 112 246777777777777664 11111 346777777777777763 34444556777777777764
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.63 E-value=2e-06 Score=88.01 Aligned_cols=273 Identities=11% Similarity=0.108 Sum_probs=134.1
Q ss_pred CCccEEEecCCCCCCCCCCc--CCCCcEEEECCCCChhhccc-cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEE
Q 044933 30 TEVRYLHWHGYPLKLLPSNI--HPEKLVLLEMPHSNIEQLFD-SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVIL 106 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L 106 (570)
.+|+.+.+.. .+++++... .+.+|+.++|+.+ ++.+.+ ++.++ +|+.+.+.. .++.+...+| ... +|+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF-~~~-~L~~i 118 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVF-QGT-DLDDF 118 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTT-TTC-CCSEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEecccee-ccC-Ccccc
Confidence 4566665542 344555442 5566666666543 555543 34444 455555543 2555555555 332 56666
Q ss_pred EecCCCCCCcCCCc-cCCCCCCEEeeeCCCCCCCCCCC---CCCCccEEEecCcCCCc-------------CChhccCCC
Q 044933 107 NLSGCKNLQSLPAR-IHLKLLKELDLSGCSKLKRLPEI---SPGNITTMHLDGTALEE-------------LPSSIECLS 169 (570)
Q Consensus 107 ~L~~~~~~~~~p~~-~~l~~L~~L~Ls~~~~~~~~p~~---~~~~L~~L~L~~~~i~~-------------lp~~~~~l~ 169 (570)
.+.++ ...+... +...+|+.+.+... ++.+... ...+++.+.+....... ....+....
T Consensus 119 ~lp~~--~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 119 EFPGA--TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp ECCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred cCCCc--cccccccccccceeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 66542 1222221 22224444444331 1111111 11334444433322111 111122233
Q ss_pred CCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEec
Q 044933 170 KLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFG 248 (570)
Q Consensus 170 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~ 248 (570)
.+..+.+.... .......+..+.+|+.+.+..+ ....-...+..+..|+.+.+..+ ++.+.. ++.++.+|+.+.+.
T Consensus 195 ~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 195 TGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 33333333211 1122233445566666665432 11122234556667777776554 444433 55667777777775
Q ss_pred cCCCCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcccccC-ccccCCCCcCEEccc
Q 044933 249 RNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIP-ESIIQLSNLERLFIR 319 (570)
Q Consensus 249 ~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls 319 (570)
.+ ........|.++++|+.+.+.++.++.+ ..+|.++.+|+.+.|..+ ++.|. .+|.++++|+.+.+.
T Consensus 272 ~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 272 AK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 43 2223334567777788777777777776 456777777887777543 66664 456677777777664
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=3.2e-08 Score=100.41 Aligned_cols=157 Identities=13% Similarity=0.175 Sum_probs=100.7
Q ss_pred cCChhccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhc--CCCcCceecccc--cc------C
Q 044933 160 ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELG--NLEALDILHAIG--TS------I 229 (570)
Q Consensus 160 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~l~~--n~------i 229 (570)
.++..+..+++|+.|++++|... .++. + .+++|++|++..|.+.......+. .+++|+.|+|+. +. +
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 34555677888888888877322 2333 3 378889999887765443333343 678888888753 11 2
Q ss_pred ccCCchh--ccCCCCcEEEeccCCCCCCcccccc---ccCCCCCeeecccCCCCC-----cCcccCCCCCccEEEccCCc
Q 044933 230 TEVPPSI--VRLKRVRGIYFGRNKGLSLPITFSV---DGLQNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLEGNN 299 (570)
Q Consensus 230 ~~l~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~n~ 299 (570)
..+...+ ..+++|+.|++++|.+... ....+ ..+++|++|+|+.|.+.+ ++..+..+++|+.|+|++|.
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1222223 3578999999999884321 11112 357899999999999886 34455668999999999998
Q ss_pred cccc-CccccC-CCCcCEEcccCcc
Q 044933 300 FERI-PESIIQ-LSNLERLFIRYCE 322 (570)
Q Consensus 300 l~~l-p~~l~~-l~~L~~L~Ls~~~ 322 (570)
++.- -..+.. + ...++++.++
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 8722 122222 2 3557777654
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.55 E-value=6.6e-06 Score=84.06 Aligned_cols=267 Identities=10% Similarity=0.032 Sum_probs=167.8
Q ss_pred CCccEEEecCCCCCCCCCCc-CCCCcEEEECCCCChhhccccccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEe
Q 044933 30 TEVRYLHWHGYPLKLLPSNI-HPEKLVLLEMPHSNIEQLFDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNL 108 (570)
Q Consensus 30 ~~L~~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L 108 (570)
.+|+.+.+.. .++.++... .--+|+.+.+.. +++.+.+......+|+.+.+..+ +..+....| ... +|+.+.+
T Consensus 69 ~~L~~I~lp~-~v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~F-~~~-~l~~~~~ 142 (379)
T 4h09_A 69 YNMTKVTVAS-TVTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA--TTEIGNYIF-YNS-SVKRIVI 142 (379)
T ss_dssp TTCCEEEECT-TCCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTTT-TTC-CCCEEEE
T ss_pred CCCCEEEeCC-cceEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc--ccccccccc-ccc-eeeeeec
Confidence 8999999974 477777654 333688888875 47777654334458999999764 566666566 444 5666666
Q ss_pred cCCCCCCcCCC-cc-CCCCCCEEeeeCCCCCCCCCC--------------CCCCCccEEEecCcCCCcCChhccCCCCCC
Q 044933 109 SGCKNLQSLPA-RI-HLKLLKELDLSGCSKLKRLPE--------------ISPGNITTMHLDGTALEELPSSIECLSKLS 172 (570)
Q Consensus 109 ~~~~~~~~~p~-~~-~l~~L~~L~Ls~~~~~~~~p~--------------~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~ 172 (570)
..+ ...+.. .+ .+.+++.+.+........... .....+..+.+..+........+..+.+|+
T Consensus 143 ~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~ 220 (379)
T 4h09_A 143 PKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLK 220 (379)
T ss_dssp CTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCS
T ss_pred cce--eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccc
Confidence 543 222322 22 678888887776432211100 000234444433322222233466677888
Q ss_pred EEeccCCCCCCcCCcccCCCCCCCEEEEcCCCCCCCcchhhcCCCcCceeccccccCccCCc-hhccCCCCcEEEeccCC
Q 044933 173 HLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPP-SIVRLKRVRGIYFGRNK 251 (570)
Q Consensus 173 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~l~~n~ 251 (570)
.+.+..+ ....-...+.++..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++. .+.++++|+.+.+.++.
T Consensus 221 ~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 221 KITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT
T ss_pred eeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccc
Confidence 8887653 23334456778888999888654 22222346777888888888644 555544 67788999999998776
Q ss_pred CCCCccccccccCCCCCeeecccCCCCCc-CcccCCCCCccEEEccCCcccccC-ccccCC
Q 044933 252 GLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIP-ESIIQL 310 (570)
Q Consensus 252 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l 310 (570)
+.......|.++.+|+.+.|..+ ++.| ..+|.++++|+.+.+..+ ++.|. .+|.++
T Consensus 298 -i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 298 -IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp -CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred -cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 34444566889999999999754 6666 468889999999888654 55554 334443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=2.3e-07 Score=84.82 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=47.8
Q ss_pred hccCCCCcEEEeccCCCCCC---ccccccccCCCCCeeecccCCCCC-----cCcccCCCCCccEEEc--cCCcccc---
Q 044933 236 IVRLKRVRGIYFGRNKGLSL---PITFSVDGLQNLRDLNLNDCGIME-----LPESLGLLSSVTTLHL--EGNNFER--- 302 (570)
Q Consensus 236 l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L--~~n~l~~--- 302 (570)
+...++|++|+|++|.+... .+...+...++|++|+|++|.+.+ +...+...++|++|+| ++|.|+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 34445555555555552211 112223344566666666666664 3455666667777777 6676652
Q ss_pred --cCccccCCCCcCEEcccCcc
Q 044933 303 --IPESIIQLSNLERLFIRYCE 322 (570)
Q Consensus 303 --lp~~l~~l~~L~~L~Ls~~~ 322 (570)
+...+...++|++|+|++|.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCcCEEeccCCC
Confidence 33445555667777776654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.14 E-value=5.3e-07 Score=82.39 Aligned_cols=89 Identities=8% Similarity=0.049 Sum_probs=52.5
Q ss_pred hcCCCcCceeccccccCc-----cCCchhccCCCCcEEEeccCCCCCC---ccccccccCCCCCeeec--ccCCCCC---
Q 044933 213 LGNLEALDILHAIGTSIT-----EVPPSIVRLKRVRGIYFGRNKGLSL---PITFSVDGLQNLRDLNL--NDCGIME--- 279 (570)
Q Consensus 213 l~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~L--s~n~l~~--- 279 (570)
+...++|++|++++|.+. .+...+...++|++|+|++|.+... .+...+...++|++|+| ++|.+..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 334444555555555544 1233344455666666666663221 12333455667888888 6777775
Q ss_pred --cCcccCCCCCccEEEccCCccc
Q 044933 280 --LPESLGLLSSVTTLHLEGNNFE 301 (570)
Q Consensus 280 --ip~~l~~l~~L~~L~L~~n~l~ 301 (570)
+...+...++|++|+|++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666788999999988875
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=8.2e-07 Score=79.53 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=68.9
Q ss_pred CCCCCc-CCCCcEEEECCCCChhhc-cccccCccCCcEEccCcccCCCCCCCCcccccC----CCCcEEEecCCCCCCc-
Q 044933 44 LLPSNI-HPEKLVLLEMPHSNIEQL-FDSVQDYGKLNQIITAAFNFFSKIPTPSLTQHL----NNLVILNLSGCKNLQS- 116 (570)
Q Consensus 44 ~lp~~~-~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l----~~L~~L~L~~~~~~~~- 116 (570)
.+|... ...+|++||++++.|+.. ...+..+++|+.|+|++|..+++.....+ ..+ ++|++|+|++|..++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHH
Confidence 456654 455789999999887743 24567899999999999988877554445 443 4799999999975554
Q ss_pred -CCCccCCCCCCEEeeeCCCCCCC
Q 044933 117 -LPARIHLKLLKELDLSGCSKLKR 139 (570)
Q Consensus 117 -~p~~~~l~~L~~L~Ls~~~~~~~ 139 (570)
+.....+++|++|++++|..++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 22222789999999999986654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=2.7e-06 Score=81.89 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=40.1
Q ss_pred cCCCCcEEEeccCCCCCC-ccccccccCCCCCeeecccCCCCCcC--cccCCCCCccEEEccCCccc-ccC-------cc
Q 044933 238 RLKRVRGIYFGRNKGLSL-PITFSVDGLQNLRDLNLNDCGIMELP--ESLGLLSSVTTLHLEGNNFE-RIP-------ES 306 (570)
Q Consensus 238 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~ip--~~l~~l~~L~~L~L~~n~l~-~lp-------~~ 306 (570)
++++|+.|+|++|++... .++..+..+++|+.|+|++|.+.++. ..+..+ +|++|+|++|.+. .+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 455666666666653222 22333445666666666666666541 222233 6666666666655 233 12
Q ss_pred ccCCCCcCEEc
Q 044933 307 IIQLSNLERLF 317 (570)
Q Consensus 307 l~~l~~L~~L~ 317 (570)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34455555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=2e-05 Score=70.49 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=6.8
Q ss_pred CCCCCccEEEccCC
Q 044933 285 GLLSSVTTLHLEGN 298 (570)
Q Consensus 285 ~~l~~L~~L~L~~n 298 (570)
..+++|+.|+|++|
T Consensus 136 ~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 136 HHFRNLKYLFLSDL 149 (176)
T ss_dssp GGCTTCCEEEEESC
T ss_pred hcCCCCCEEECCCC
Confidence 33455555555544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=5.8e-05 Score=72.60 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCCCCEEeccCCCCCC--cCCcccCCCCCCCEEEEcCCCCCCC-cchhhcCCCcCceeccccccCc-cCCc-------h
Q 044933 167 CLSKLSHLGLADCKSLK--SLPSGLCKLKSLDVLIIDGCSNLQR-LPEELGNLEALDILHAIGTSIT-EVPP-------S 235 (570)
Q Consensus 167 ~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~l~~n~i~-~l~~-------~ 235 (570)
.+++|+.|+|++|++.+ .+|..+..+++|+.|+|++|.+.+. .-..+..+ +|++|++++|.+. .+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 35555555555555444 3334444555555555555554432 01112222 5666666666655 2331 2
Q ss_pred hccCCCCcEEE
Q 044933 236 IVRLKRVRGIY 246 (570)
Q Consensus 236 l~~l~~L~~L~ 246 (570)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44566666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.58 E-value=0.001 Score=60.53 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=15.8
Q ss_pred CCCCeeecccCCCCC-----cCcccCCCCCccEEEccC
Q 044933 265 QNLRDLNLNDCGIME-----LPESLGLLSSVTTLHLEG 297 (570)
Q Consensus 265 ~~L~~L~Ls~n~l~~-----ip~~l~~l~~L~~L~L~~ 297 (570)
+.|+.|+|++|.|.. +.+++..-+.|++|+|++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 345555555555443 233444444555555544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.03 E-value=0.007 Score=51.16 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=25.1
Q ss_pred EEEecCCCCC--CCCCCcCCCCcEEEECCCCChhhcccc-ccCccCCcEEccCcc
Q 044933 34 YLHWHGYPLK--LLPSNIHPEKLVLLEMPHSNIEQLFDS-VQDYGKLNQIITAAF 85 (570)
Q Consensus 34 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~~ 85 (570)
.++.++..++ .+|..+ +.+|++|+|++|+|+.++.+ +..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4455555555 555443 34455555555555555432 334444444444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.92 E-value=0.0027 Score=57.68 Aligned_cols=88 Identities=10% Similarity=0.011 Sum_probs=42.9
Q ss_pred hcCCCcCceeccccccCc-----cCCchhccCCCCcEEEeccCCCCCC---ccccccccCCCCCeeecccCC---CCC--
Q 044933 213 LGNLEALDILHAIGTSIT-----EVPPSIVRLKRVRGIYFGRNKGLSL---PITFSVDGLQNLRDLNLNDCG---IME-- 279 (570)
Q Consensus 213 l~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~Ls~n~---l~~-- 279 (570)
+..-+.|+.|+|++|.|. .+-..+..-+.|+.|+|+.|.+... .+...+..-+.|++|+|++|. +..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 334444555555555554 2222334445566666666553221 111223333457777776542 221
Q ss_pred ---cCcccCCCCCccEEEccCCcc
Q 044933 280 ---LPESLGLLSSVTTLHLEGNNF 300 (570)
Q Consensus 280 ---ip~~l~~l~~L~~L~L~~n~l 300 (570)
+...+..-+.|+.|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 334455556777777766654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.64 E-value=0.023 Score=47.99 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=30.2
Q ss_pred EEeeeCCCCCC--CCCCCCCCCccEEEecCcCCCcCChh-ccCCCCCCEEeccCCC
Q 044933 128 ELDLSGCSKLK--RLPEISPGNITTMHLDGTALEELPSS-IECLSKLSHLGLADCK 180 (570)
Q Consensus 128 ~L~Ls~~~~~~--~~p~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~ 180 (570)
.++.++. .++ .+|.....+|++|+|++|.|+.+|.. |..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444442 233 55554555667777777777766654 4556666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.08 E-value=18 Score=28.27 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=21.7
Q ss_pred cccCccCCcEEccCcccCCCCCCCCcccccCCCCcEEEecC
Q 044933 70 SVQDYGKLNQIITAAFNFFSKIPTPSLTQHLNNLVILNLSG 110 (570)
Q Consensus 70 ~~~~l~~L~~L~Ls~~~~l~~~~~~~~~~~l~~L~~L~L~~ 110 (570)
.+.+|.+|+.+.+-.+ ++.+...+| .++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~--v~~Ig~~aF-~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN--IGLLYDGMF-SGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT--SSCCCTTSS-TTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc--hheEcHHHH-hccCCccEEEEcC
Confidence 4555666666666542 555555555 5566666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.52 E-value=75 Score=24.59 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=28.3
Q ss_pred CCCcCCh-hccCCCCCCEEeccCCCCCCcCCcccCCCCCCCEEEEcC
Q 044933 157 ALEELPS-SIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDG 202 (570)
Q Consensus 157 ~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 202 (570)
.++.|.. .|.+|.+|+.+.+..+ ....-...|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444543 3777788888777653 3334445677777777777765
Done!