BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044934
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 15 APSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDA 67
AP R+FKA V++ H + K P FKS +G G VG++ ++ T M + D
Sbjct: 21 APHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDE 80
Query: 68 LDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
+D N YCKYT+FE D + D +E +V+++K
Sbjct: 81 IDAANFYCKYTLFEGDVLRDNIEKVVYEVKL 111
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS- 60
GV ++ + + P R+FKAFV+D+ NL PK+ PQA K +G G G+I+ ++
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 61 ------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
++ ++D++D++N YT+ E D + D LE I ++ K
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKL 104
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +R+FKAF++D NLFPK+ PQA S+ +G G G+I+ +S
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E I D LE I +IK
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +R+FKAF++D NLFPK+ PQA S+ +G G G+I+ +S
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E I D LE I +IK
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +R+FKAF++D NLFPK+ PQA S+ +G G G+I+ +S
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E I D LE I +IK
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +R+FKAF++D NLFPK+ PQA S+ +G G G+I+ +S
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E + D LE I +IK
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIK 103
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS- 60
GV ++ + + P R+FKAFV+D+ NL PK+ PQA K G G G+I+ ++
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 61 ------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
++ ++D++D++N YT+ E D + D LE I ++ K
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKL 104
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +R+FKAF++D NLFPK+ PQA S+ G G G+I+ +S
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E I D LE I +IK
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +R+FKAF++D NL PK+ PQA S+ +G G G+I+ +S
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E I D LE I +IK
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +R+FKAF++D LFP++ PQA S+ G G G+I+ +S
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E I D LE I +IK
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
GV ++ + + +RMFKAF++D L PK+ PQA S+ +G G G+I+ ++
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 59 ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
++ RVD +D N Y+V E + D LE I +IK
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIK 103
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
MGV ++ + + ++FKAFV+D+ NL PK+ PQA K +G G G+I+ ++
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61 -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
++ ++ ++D+ N Y++ E D +S+ +E I ++ K
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKL 105
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---- 57
GV F+ + + AP+ ++KA V D+ N+ PK L +FKS+ +G G G+I+ +
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 58 ---STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF--GP 100
+ + +++++D NL Y+V + D E I F K GP
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGP 107
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---- 57
GV F+ + + AP+R++KA V D+ + PK + +A +SI +G G G+I+ +
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 58 ---STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
+ + +++A+D NL Y++ + D +E I F+ K
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKL 103
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
MGV+ + + + + ++++ V D + ++PK LP+ + +G G G+I+ ++
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 59 ---TSMQSRVDALDRDNLYCKYTVFEEDCISD-ILELIVFQIKFGPYKLKKISSNASCLM 114
S + +D +DR+N Y+V+E +SD LE IVF+ K P + C++
Sbjct: 66 GDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVP------TPEEGCIV 119
Query: 115 K 115
K
Sbjct: 120 K 120
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---- 57
G+ F+ + S AP++++KA DS + PK++ + +S+ +G G G+I+ +
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 58 ---STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
++ + ++DA+D NL Y++ + + + LE I ++ K P
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILP 105
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
MGV + + + + ++F+ FVID + PK P A+KS+ +G G G++++++
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 59 -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
T+M R+D ++++ L Y+V + D + +E I + P
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVP 106
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSM 61
GV F+ + A A +++FKA DS ++ PK++ Q +S+ +G G G+++ ++ S
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62 QS-------RVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF--GP 100
++DA+D + Y++ + + LE I F+ K GP
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGP 107
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV--- 57
MGV F + + AP++++KA V D+ + PK + + +S+ +G G G+I+ +
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 58 ----STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
S + +++A+D NL Y++ + D +E I F+ K
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKL 104
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS- 60
GV F + S + AP++++KA DS + K + +SI +G G VG+I+ ++ +
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANE 59
Query: 61 ------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
+ +VDA+D NL Y++ + + LE + F+ K
Sbjct: 60 GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETK 102
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 18 RMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDR 70
++F V+D + PK A+KS V +G G G++ +++ T+M R DA+++
Sbjct: 18 KIFSGIVLDVDTVIPKAATGAYKS-VEVKGDGGAGTVRIITLPEGSPITTMTVRTDAVNK 76
Query: 71 DNLYCKYTVFEEDCISDILELI 92
+ L TV + D + +E I
Sbjct: 77 EALSYDSTVIDGDILLGFIESI 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,179,353
Number of Sequences: 62578
Number of extensions: 109932
Number of successful extensions: 222
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 22
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)