Query 044934
Match_columns 115
No_of_seqs 113 out of 620
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 9.1E-36 2E-40 213.9 13.0 107 1-115 1-115 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 1.2E-27 2.5E-32 170.2 13.2 104 4-115 1-112 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.5 6.4E-13 1.4E-17 89.9 10.8 99 5-115 2-104 (140)
4 PF10604 Polyketide_cyc2: Poly 99.3 4.4E-10 9.6E-15 76.0 13.5 95 4-114 2-100 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.2 4.1E-10 9E-15 77.6 10.8 94 7-114 2-106 (144)
6 cd07819 SRPBCC_2 Ligand-bindin 99.0 1.7E-08 3.8E-13 68.4 12.2 95 4-114 2-104 (140)
7 cd08861 OtcD1_ARO-CYC_like N-t 99.0 1.2E-08 2.5E-13 70.1 10.3 97 6-115 1-103 (142)
8 cd08865 SRPBCC_10 Ligand-bindi 98.9 2.3E-08 5E-13 67.3 10.9 92 6-114 1-100 (140)
9 cd07813 COQ10p_like Coenzyme Q 98.9 1.2E-08 2.6E-13 70.3 8.4 92 7-115 2-100 (138)
10 cd08862 SRPBCC_Smu440-like Lig 98.9 7.1E-08 1.5E-12 65.4 12.0 94 5-114 2-99 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 98.7 4.3E-07 9.3E-12 61.2 12.0 94 6-114 2-103 (141)
12 cd07812 SRPBCC START/RHO_alpha 98.7 3.9E-07 8.6E-12 59.3 10.0 94 7-114 2-102 (141)
13 cd07820 SRPBCC_3 Ligand-bindin 98.6 3.9E-07 8.5E-12 63.0 9.7 93 6-114 1-103 (137)
14 cd07818 SRPBCC_1 Ligand-bindin 98.6 1E-06 2.3E-11 61.0 11.8 97 5-114 3-108 (150)
15 cd07824 SRPBCC_6 Ligand-bindin 98.6 9.6E-07 2.1E-11 61.6 10.6 92 5-114 2-103 (146)
16 cd07814 SRPBCC_CalC_Aha1-like 98.5 1.5E-06 3.3E-11 58.7 9.9 94 6-114 2-102 (139)
17 cd07825 SRPBCC_7 Ligand-bindin 98.5 2.7E-06 5.8E-11 58.4 10.3 95 6-114 2-106 (144)
18 cd07817 SRPBCC_8 Ligand-bindin 98.5 1.3E-06 2.8E-11 59.2 8.0 93 6-114 2-97 (139)
19 cd05018 CoxG Carbon monoxide d 98.4 4.2E-06 9.1E-11 56.8 9.9 97 5-114 2-104 (144)
20 cd08860 TcmN_ARO-CYC_like N-te 98.4 6.5E-06 1.4E-10 58.4 11.0 96 5-114 2-104 (146)
21 PF03364 Polyketide_cyc: Polyk 98.3 7.8E-06 1.7E-10 55.2 9.7 79 12-101 1-86 (130)
22 cd07823 SRPBCC_5 Ligand-bindin 98.3 9.8E-06 2.1E-10 56.5 9.2 96 7-114 2-105 (146)
23 PRK10724 hypothetical protein; 98.2 1.6E-05 3.5E-10 57.4 9.2 93 5-114 16-115 (158)
24 cd08898 SRPBCC_CalC_Aha1-like_ 97.8 0.00018 3.8E-09 49.1 8.2 97 5-114 2-106 (145)
25 cd08899 SRPBCC_CalC_Aha1-like_ 97.8 0.00024 5.3E-09 50.3 8.9 90 2-114 9-104 (157)
26 cd08893 SRPBCC_CalC_Aha1-like_ 97.7 0.00049 1.1E-08 46.3 9.2 89 5-101 1-96 (136)
27 COG3427 Carbon monoxide dehydr 97.7 0.00055 1.2E-08 49.3 9.1 91 5-101 2-98 (146)
28 cd07826 SRPBCC_CalC_Aha1-like_ 97.5 0.002 4.3E-08 44.8 9.9 95 6-114 2-105 (142)
29 cd08900 SRPBCC_CalC_Aha1-like_ 97.5 0.0029 6.2E-08 43.8 10.2 97 6-114 2-108 (143)
30 cd08896 SRPBCC_CalC_Aha1-like_ 97.4 0.0031 6.6E-08 43.8 10.2 98 6-114 2-109 (146)
31 cd08897 SRPBCC_CalC_Aha1-like_ 97.4 0.0023 4.9E-08 43.8 8.6 90 5-114 1-101 (133)
32 COG5637 Predicted integral mem 97.2 0.0016 3.5E-08 48.8 6.9 71 3-82 69-147 (217)
33 PF06240 COXG: Carbon monoxide 97.2 0.0079 1.7E-07 41.9 9.8 86 9-101 2-93 (140)
34 cd08891 SRPBCC_CalC Ligand-bin 97.2 0.012 2.5E-07 41.0 10.6 93 6-114 2-109 (149)
35 cd08892 SRPBCC_Aha1 Putative h 97.1 0.0071 1.5E-07 41.2 9.1 85 6-101 2-87 (126)
36 cd08894 SRPBCC_CalC_Aha1-like_ 97.1 0.011 2.5E-07 40.6 10.0 92 6-114 2-102 (139)
37 cd08895 SRPBCC_CalC_Aha1-like_ 97.1 0.021 4.5E-07 39.6 11.2 30 5-36 1-30 (146)
38 cd08901 SRPBCC_CalC_Aha1-like_ 96.9 0.018 3.8E-07 39.6 9.5 88 6-114 2-94 (136)
39 cd08876 START_1 Uncharacterize 96.9 0.041 8.8E-07 39.8 11.8 43 4-49 41-83 (195)
40 PTZ00220 Activator of HSP-90 A 96.5 0.018 3.8E-07 39.9 7.3 87 12-114 1-88 (132)
41 PF08327 AHSA1: Activator of H 96.2 0.059 1.3E-06 35.5 8.1 85 13-114 1-91 (124)
42 COG2867 Oligoketide cyclase/li 95.8 0.026 5.6E-07 40.7 5.3 94 5-114 3-103 (146)
43 COG3832 Uncharacterized conser 95.2 0.22 4.7E-06 35.2 8.4 32 3-36 7-38 (149)
44 PF08982 DUF1857: Domain of un 94.3 1.3 2.8E-05 31.8 10.5 91 6-100 2-111 (149)
45 cd08863 SRPBCC_DUF1857 DUF1857 93.2 0.95 2.1E-05 32.4 8.1 50 15-67 18-70 (141)
46 cd08873 START_STARD14_15-like 91.5 5.3 0.00011 30.8 12.8 102 4-114 77-196 (235)
47 cd08874 START_STARD9-like C-te 90.7 5.5 0.00012 29.9 10.1 48 6-56 47-95 (205)
48 cd08914 START_STARD15-like Lip 82.6 20 0.00044 27.7 11.7 51 4-58 78-129 (236)
49 cd08906 START_STARD3-like Chol 81.9 1.9 4E-05 32.2 3.4 41 5-47 50-90 (209)
50 cd08913 START_STARD14-like Lip 75.0 36 0.00077 26.2 12.0 50 5-58 82-132 (240)
51 cd08905 START_STARD1-like Chol 74.9 1.8 3.9E-05 32.2 1.5 40 6-47 51-90 (209)
52 PF10698 DUF2505: Protein of u 71.8 32 0.0007 24.2 10.2 90 6-101 1-113 (159)
53 PF11485 DUF3211: Protein of u 71.8 33 0.00072 24.4 7.8 76 5-84 2-79 (136)
54 cd08868 START_STARD1_3_like Ch 66.2 49 0.0011 24.1 11.6 40 6-47 50-89 (208)
55 PF11687 DUF3284: Domain of un 57.5 58 0.0013 22.1 6.2 17 8-24 3-19 (120)
56 cd00177 START Lipid-binding ST 55.3 66 0.0014 22.1 12.0 42 5-49 40-81 (193)
57 COG4276 Uncharacterized conser 55.0 78 0.0017 22.9 10.0 90 4-101 2-103 (153)
58 PF08473 VGCC_alpha2: Neuronal 50.5 27 0.00058 23.4 3.4 30 53-84 26-55 (94)
59 cd08877 START_2 Uncharacterize 48.6 1.1E+02 0.0023 22.5 9.6 41 4-47 46-86 (215)
60 cd08867 START_STARD4_5_6-like 47.1 40 0.00086 24.6 4.3 39 6-47 48-88 (206)
61 cd08903 START_STARD5-like Lipi 47.0 33 0.00071 25.4 3.8 40 6-47 48-88 (208)
62 cd08911 START_STARD7-like Lipi 42.1 1.4E+02 0.003 21.9 12.3 94 5-101 46-158 (207)
63 cd08870 START_STARD2_7-like Li 29.3 2.3E+02 0.0049 20.7 12.2 95 4-101 50-161 (209)
64 cd08904 START_STARD6-like Lipi 25.5 1.3E+02 0.0027 22.5 4.0 39 6-47 48-86 (204)
65 PF11248 DUF3046: Protein of u 21.3 70 0.0015 19.8 1.6 18 11-28 41-58 (63)
66 PF10339 Vel1p: Yeast-specific 20.4 66 0.0014 24.0 1.5 26 10-35 58-83 (203)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=9.1e-36 Score=213.92 Aligned_cols=107 Identities=31% Similarity=0.512 Sum_probs=99.7
Q ss_pred CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccc-cEEEEc-------eeeeEEEeeecCCc
Q 044934 1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVG-SIEVVS-------TSMQSRVDALDRDN 72 (115)
Q Consensus 1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~G-sir~~t-------~~~kEri~~vDe~~ 72 (115)
|++++++.|+++++||+|+|++| ++.++++||++|+.|+|+|++||||++| |||.|+ .++|||++.+|++|
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~-~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAF-KSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHH-TTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHH-hcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 99999999999999999999997 5588999999999999999999999887 999999 68999999999999
Q ss_pred cEEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934 73 LYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115 (115)
Q Consensus 73 ~~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk 115 (115)
++++|++||||++ ..|++|+.++++.|+ ++|||++|
T Consensus 80 ~~~~y~viEGd~l-~~~~~~~~~~~~~~~------~~g~~v~k 115 (151)
T PF00407_consen 80 KTITYTVIEGDVL-GDYKSFKSTIQKIPK------GDGGCVVK 115 (151)
T ss_dssp TEEEEEEEEETTG-TTTEEEEEEEEEEEE------TTSCEEEE
T ss_pred cEEEEEEEecccc-ccEEEEEEEEEecCC------CCCceEEE
Confidence 9999999999988 689999999999999 89999986
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.95 E-value=1.2e-27 Score=170.19 Aligned_cols=104 Identities=31% Similarity=0.539 Sum_probs=93.1
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccc-cccccceeeEEEEecCCccccEEEEc---e----eeeEEEeeecCCccEE
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFP-KLLPQAFKSIVYEQGYGEVGSIEVVS---T----SMQSRVDALDRDNLYC 75 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~p-k~~P~~v~sve~~eGdg~~Gsir~~t---~----~~kEri~~vDe~~~~~ 75 (115)
++++.|++|+|||+++|++ ++|+.+.+| .|+| .|++|++++|||++||||.|+ + .++|||+.+|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~-~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKA-FVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHH-HhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 3689999999999999999 589885345 4555 899999999999999999999 3 8999999999999999
Q ss_pred EEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934 76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115 (115)
Q Consensus 76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk 115 (115)
+|+++||+++..+|++|+++++|.|. ++++|+++
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~------~~~~t~v~ 112 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPK------GDGGCVVK 112 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEEC------CCCCEEEE
Confidence 99999999875589999999999998 88899874
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.48 E-value=6.4e-13 Score=89.94 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=83.6
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF 80 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi 80 (115)
.++.+++|++|++++|++ +.|+.++ |+|.|. ++++++++++.++|+++.+. ..+++++..+|+.+..+.|++.
T Consensus 2 ~i~~~~~i~a~~~~V~~~-l~d~~~~-~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~~~~~~~~~i~~~~~ 78 (140)
T cd07821 2 KVTVSVTIDAPADKVWAL-LSDFGGL-HKWHPA-VASCELEGGGPGVGAVRTVTLKDGGTVRERLLALDDAERRYSYRIV 78 (140)
T ss_pred cEEEEEEECCCHHHHHHH-HhCcCch-hhhccC-cceEEeecCCCCCCeEEEEEeCCCCEEEEEehhcCccCCEEEEEec
Confidence 478899999999999999 5899985 999995 88999988765789998887 4678999999998889999999
Q ss_pred ecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934 81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115 (115)
Q Consensus 81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk 115 (115)
+|+ .++.++..+++|+|. ++|||.++
T Consensus 79 ~~~---~~~~~~~~~~~~~~~------~~~~t~v~ 104 (140)
T cd07821 79 EGP---LPVKNYVATIRVTPE------GDGGTRVT 104 (140)
T ss_pred CCC---CCcccceEEEEEEEC------CCCccEEE
Confidence 874 346678889999998 77688763
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.26 E-value=4.4e-10 Score=75.97 Aligned_cols=95 Identities=17% Similarity=0.285 Sum_probs=75.1
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEE
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTV 79 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~v 79 (115)
.+++.++.|++||+++|+. +.|+.++ |+|.| .+.++++++++| +|..+.++ ..+.+++..+|++++.+.|++
T Consensus 2 ~~~~~~~~v~a~~e~V~~~-l~d~~~~-~~w~~-~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDL-LSDPENW-PRWWP-GVKSVELLSGGG-PGTERTVRVAGRGTVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp EEEEEEEEESS-HHHHHHH-HTTTTGG-GGTST-TEEEEEEEEECS-TEEEEEEEECSCSEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEECCCHHHHHHH-HhChhhh-hhhhh-ceEEEEEccccc-cceeEEEEeccccceeEEEEEecCCCcEEEEEE
Confidence 5788999999999999999 6999985 99999 489999887444 35444444 468999999998899999999
Q ss_pred EecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
. ..++..+..+++++|. ++ ||.+
T Consensus 78 ~-----~~~~~~~~~~~~~~~~------~~-gt~v 100 (139)
T PF10604_consen 78 V-----PSGFTNGTGRWRFEPV------GD-GTRV 100 (139)
T ss_dssp E-----SSSSCEEEEEEEEEEE------TT-TEEE
T ss_pred E-----ecceeEEEEEEEEEEc------CC-CEEE
Confidence 6 2345677888999998 54 4765
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=4.1e-10 Score=77.56 Aligned_cols=94 Identities=15% Similarity=0.246 Sum_probs=70.5
Q ss_pred EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-cc-----ccEEEEc----eeeeEEEeeecCCccEEE
Q 044934 7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EV-----GSIEVVS----TSMQSRVDALDRDNLYCK 76 (115)
Q Consensus 7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~-----Gsir~~t----~~~kEri~~vDe~~~~~~ 76 (115)
..++.|++|++++|++ +.|+.++ |+|+|+ +++++++++++ +. |..+.+. ..+..++...|+.++.+.
T Consensus 2 ~~~~~i~a~~~~Vw~~-l~D~~~~-~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 78 (144)
T cd08866 2 VARVRVPAPPETVWAV-LTDYDNL-AEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELD 78 (144)
T ss_pred eEEEEECCCHHHHHHH-HhChhhH-HhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEE
Confidence 5789999999999999 6999995 999995 99999987754 21 1121111 334455666666688999
Q ss_pred EEEEecCccCcceEEEEEEEEEEecccccccCC-Cceee
Q 044934 77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSN-ASCLM 114 (115)
Q Consensus 77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~-gg~~v 114 (115)
|++++|+ +..+..+.+++|. ++ |||.+
T Consensus 79 ~~~~~g~-----~~~~~g~w~~~~~------~~~~~t~v 106 (144)
T cd08866 79 FEMVEGD-----FKRFEGSWRLEPL------ADGGGTLL 106 (144)
T ss_pred EEEcCCc-----hhceEEEEEEEEC------CCCCeEEE
Confidence 9999875 5677888999998 77 67865
No 6
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.00 E-value=1.7e-08 Score=68.43 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=67.8
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc---e----eeeEEEeeecCCccEE
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS---T----SMQSRVDALDRDNLYC 75 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t---~----~~kEri~~vDe~~~~~ 75 (115)
.+++..+.|++|++++|++ +.|+.++ |+|+|. +.++++++++ ++.+....++ . .+.-+++ .++ ++.+
T Consensus 2 ~~v~~s~~i~ap~e~V~~~-l~D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i 76 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDV-LADVEAY-PEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV 76 (140)
T ss_pred ceEEEEEEEeCCHHHHHHH-HhChhhh-hhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence 4789999999999999999 6999995 999996 9999987653 3333333333 1 1122222 223 6779
Q ss_pred EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
+|+..+|. ....+..+.+++|. ++ ||.+
T Consensus 77 ~~~~~~~~----~~~~~~~~~~~~~~------~~-~t~v 104 (140)
T cd07819 77 SWTLVEGE----GNRSQEGSYTLTPK------GD-GTRV 104 (140)
T ss_pred EEEEeccc----ceeEEEEEEEEEEC------CC-CEEE
Confidence 99998875 36667788999998 55 6765
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=98.96 E-value=1.2e-08 Score=70.12 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=68.7
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc------eeeeEEEeeecCCccEEEEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS------TSMQSRVDALDRDNLYCKYTV 79 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t------~~~kEri~~vDe~~~~~~y~v 79 (115)
++.+++|++|++++|++ +.|+.++ |+|+|. .+++.++++++...++.|. ..-.+....+|++.+.+.|..
T Consensus 1 ~~~s~~i~ap~~~V~~~-l~D~~~~-p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 1 VEHSVTVAAPAEDVYDL-LADAERW-PEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred CeEEEEEcCCHHHHHHH-HHhHHhh-hccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEE
Confidence 36789999999999999 6999995 999996 5666665543222455444 122233445788888899999
Q ss_pred EecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934 80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115 (115)
Q Consensus 80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk 115 (115)
+++.. .+..+.....|+|. ++++|.|+
T Consensus 77 ~~~~~---~~~~~~g~w~~~~~------~~~~t~Vt 103 (142)
T cd08861 77 EEPPP---PVASMSGEWRFEPL------GGGGTRVT 103 (142)
T ss_pred eeCCC---ChhhheeEEEEEEC------CCCcEEEE
Confidence 88543 25666777888998 66778763
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.94 E-value=2.3e-08 Score=67.26 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=69.1
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS-------TSMQSRVDALDRDNLYCKY 77 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t-------~~~kEri~~vDe~~~~~~y 77 (115)
++.++.|++|++++|+. +.|+.++ |+|.|. +.+++.+.++ .++|+...+. -.+++++..+|+ ++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~-l~d~~~~-~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAY-LADFENA-PEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHH-HHCccch-hhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence 35789999999999999 5999995 999996 6788877554 3678887765 246888888884 578888
Q ss_pred EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
...+|. + .+..+..++|. ++ ||.+
T Consensus 77 ~~~~~~-~-----~~~~~~~~~~~------~~-~t~v 100 (140)
T cd08865 77 RGSSGP-F-----PYEDTYTFEPV------GG-GTRV 100 (140)
T ss_pred EecCCC-c-----ceEEEEEEEEc------CC-ceEE
Confidence 887653 2 24667888887 44 5755
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.90 E-value=1.2e-08 Score=70.26 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=70.2
Q ss_pred EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEEEE
Q 044934 7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKYTV 79 (115)
Q Consensus 7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~v 79 (115)
+.++.|++|++.+|+. +.|..++ |+|+|+ +++++++++++ .+....++ ..+..++. +|. ++.+++..
T Consensus 2 ~~s~~i~ap~~~v~~~-i~D~~~~-~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSRLVPYSAEQMFDL-VADVERY-PEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEEEcCCCHHHHHHH-HHHHHhh-hhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 6789999999999999 6999995 999995 99999998866 33333343 33445555 666 66789998
Q ss_pred EecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934 80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115 (115)
Q Consensus 80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk 115 (115)
++|. ++.+..+.+++|. ++|+|.|+
T Consensus 76 ~~g~-----~~~~~g~w~~~p~------~~~~T~v~ 100 (138)
T cd07813 76 VDGP-----FKHLEGEWRFKPL------GENACKVE 100 (138)
T ss_pred cCCC-----hhhceeEEEEEEC------CCCCEEEE
Confidence 8883 5667788999998 77888763
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=98.89 E-value=7.1e-08 Score=65.38 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=68.9
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF 80 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi 80 (115)
+++.++.|+||++++|++ +.|+.++ |+|+|+ +++++..++..++|+...++ ..+..++..+++.+ .+.++..
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~-~~d~~~~-~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~p~~-~~~~~~~ 77 (138)
T cd08862 2 KFEATIVIDAPPERVWAV-LTDVENW-PAWTPS-VETVRLEGPPPAVGSSFKMKPPGLVRSTFTVTELRPGH-SFTWTGP 77 (138)
T ss_pred EEEEEEEEcCCHHHHHHH-HHhhhhc-ccccCc-ceEEEEecCCCCCCcEEEEecCCCCceEEEEEEecCCC-EEEEEec
Confidence 578899999999999999 5999985 999995 89999876542677766665 45667778788654 4677653
Q ss_pred ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
. + ......+++++|. ++|||.+
T Consensus 78 ~-~-----~~~~~~~~~~~~~------~~~~t~l 99 (138)
T cd08862 78 A-P-----GISAVHRHEFEAK------PDGGVRV 99 (138)
T ss_pred C-C-----CEEEEEEEEEEEc------CCCcEEE
Confidence 2 2 1244568888887 5567754
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.74 E-value=4.3e-07 Score=61.19 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=67.9
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccEEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLYCKY 77 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~~~y 77 (115)
++.++.|++|++++|++ +.|+.++ |+|+|. +..++... .++|+...+. ..+.+++..+|+. +.+.|
T Consensus 2 v~~~~~i~ap~~~Vw~~-~~d~~~~-~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEV-LTDFPSY-PEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHH-Hhccccc-cccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 57889999999999999 5999885 999995 55555331 4566666655 2456788888874 57788
Q ss_pred EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
+...|+.. .-....+..|+|. +++||.+
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~------~~~~T~~ 103 (141)
T cd07822 76 RGGLPFPG---LLDGEHSFELEPL------GDGGTRF 103 (141)
T ss_pred EecCCCCc---EeeEEEEEEEEEc------CCCcEEE
Confidence 88766532 2345567888997 6778865
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.68 E-value=3.9e-07 Score=59.32 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=70.0
Q ss_pred EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc------eeeeEEEeeecCCccEEEEEE
Q 044934 7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS------TSMQSRVDALDRDNLYCKYTV 79 (115)
Q Consensus 7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t------~~~kEri~~vDe~~~~~~y~v 79 (115)
+.++.|++|++++|++ +.|+.+ +|+|.|. +.++++.++.+ ..|....+. .....++..+++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~-l~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDL-LSDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHH-HhChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCCccccceEEEEEecC-CCceEEEE
Confidence 5688999999999999 599888 5999996 78888776643 555554443 346788887777 66888998
Q ss_pred EecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.+++.. ..+..+.++.+. +++||.+
T Consensus 78 ~~~~~~----~~~~~~~~~~~~------~~~~t~v 102 (141)
T cd07812 78 TGGGGG----VDGTGEWRLEPE------GDGGTRV 102 (141)
T ss_pred ecCCCC----cceeEEEEEEEC------CCCcEEE
Confidence 876643 567777888887 4436654
No 13
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.65 E-value=3.9e-07 Score=62.96 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=68.8
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-C--ccccEEEEc----e---eeeEEEeeecCCccEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-G--EVGSIEVVS----T---SMQSRVDALDRDNLYC 75 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g--~~Gsir~~t----~---~~kEri~~vDe~~~~~ 75 (115)
++.++.|++|++++|+. +.|..++ |+|+|+ +.++++++.+ | .+|+.-.|. . ..+-++..+++ ++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~-~~d~~~~-~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDF-HSRPDNL-ERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHH-HcCcchH-HhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeE
Confidence 46789999999999999 6999995 999996 7889988543 2 467877776 2 45666666554 4568
Q ss_pred EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.+..+.|. +.++..+..|+|. ++ ||.+
T Consensus 77 ~~~~~~G~-----~~~w~h~~~f~~~------~~-gT~v 103 (137)
T cd07820 77 VDEQVSGP-----FRSWRHTHRFEAI------GG-GTLM 103 (137)
T ss_pred EEEeccCC-----chhCEEEEEEEEC------CC-ceEE
Confidence 78877653 4566777888887 44 6765
No 14
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.65 E-value=1e-06 Score=60.96 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=68.0
Q ss_pred EEEEEEEeccCHHHHHHHHhccccccccccccccee--eEEE--EecCCccccEEEEc--e---eeeEEEeeecCCccEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFK--SIVY--EQGYGEVGSIEVVS--T---SMQSRVDALDRDNLYC 75 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~--sve~--~eGdg~~Gsir~~t--~---~~kEri~~vDe~~~~~ 75 (115)
+++.++.|++|++++|++ +.|+.++ |+|+|.... .++. .+++.++|+...|+ . ....++..+++ ++.+
T Consensus 3 ~~~~s~~I~ap~e~V~~~-i~D~~~~-~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~p-~~~i 79 (150)
T cd07818 3 RVERSIVINAPPEEVFPY-VNDLKNW-PEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEMEITESVP-NERI 79 (150)
T ss_pred EEEEEEEEeCCHHHHHHH-HhCcccC-cccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEEEEEecCC-CcEE
Confidence 678899999999999999 6999995 999995322 1222 12344788877777 2 23455666654 5678
Q ss_pred EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.|++..++++ . -....++.|+|. +|||.+
T Consensus 80 ~~~~~~~~~~-~--~~~~~~~~~~~~-------~~gT~v 108 (150)
T cd07818 80 EYELRFIKPF-E--ATNDVEFTLEPV-------GGGTKV 108 (150)
T ss_pred EEEEEecCCc-c--ccceEEEEEEEc-------CCceEE
Confidence 8999865543 1 356788999997 457865
No 15
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.60 E-value=9.6e-07 Score=61.60 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=63.7
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEe-cC-CccccEEEEc--------eeeeEEEeeecCCccE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQ-GY-GEVGSIEVVS--------TSMQSRVDALDRDNLY 74 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~e-Gd-g~~Gsir~~t--------~~~kEri~~vDe~~~~ 74 (115)
.++....|++|++++|++ +.|+.++ |+|.|. ++++++++ |+ .++|+.-+++ ..+.-++..+ +.++.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~-~tD~~~~-~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~ 77 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDV-LVDAESW-PDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSL 77 (146)
T ss_pred cceEEEEecCCHHHHHHH-HhChhhc-chhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcE
Confidence 367788999999999999 6999984 999995 89999887 33 3777765432 1233444444 35667
Q ss_pred EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
+.++. +|+.. . ..+..|+|. ++||.+
T Consensus 78 ~~~~~-~g~~~--~----~~~~~~~~~-------~~gt~v 103 (146)
T cd07824 78 LEVRA-SGDLE--G----VGRWTLAPD-------GSGTVV 103 (146)
T ss_pred EEEEE-EEeee--E----EEEEEEEEc-------CCCEEE
Confidence 78874 66532 1 456778887 446866
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=98.53 E-value=1.5e-06 Score=58.69 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=64.3
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKYT 78 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~ 78 (115)
++.+++|+||++++|++ +.|+.++ |+|+|. +..++.....| |+.+... ..+..++..+|+. +.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~-l~d~~~~-~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRA-LTDPELL-AQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHH-cCCHHHH-HhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence 67889999999999999 5998884 999996 22222111122 5665543 3567888888866 578899
Q ss_pred EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
...++. ...-....+++|.|. + +||.+
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~------~-~~T~v 102 (139)
T cd07814 76 WAFSDE--TPGPETTVTVTLEET------G-GGTRL 102 (139)
T ss_pred ecccCC--CCCCceEEEEEEEEC------C-CCEEE
Confidence 887753 112345677888898 5 45755
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.49 E-value=2.7e-06 Score=58.42 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=62.3
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC--CccccEEEEc-------eeeeEEEeeecCCccEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY--GEVGSIEVVS-------TSMQSRVDALDRDNLYCK 76 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd--g~~Gsir~~t-------~~~kEri~~vDe~~~~~~ 76 (115)
++.++.|+||++++|++ +.|+.+ +|+|.|.... .....++ -.+|+...+. ..+..++..+|+.+ .+.
T Consensus 2 i~~~~~i~ap~e~Vw~~-l~d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~-~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAV-LADPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEENR-LIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHH-HhCccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECCCC-EEE
Confidence 57899999999999999 599988 4999985332 2222343 3678776665 33445567677755 477
Q ss_pred EEEE-ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 77 YTVF-EEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 77 y~vi-eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
|+.. .+.. ......++.++|. ++|+|.+
T Consensus 78 ~~~~~~~~~----~~~~~~~~~l~~~------~~g~T~v 106 (144)
T cd07825 78 WRPGPAGQE----PGGHRWRWELEPI------GPGRTRV 106 (144)
T ss_pred EEccCCCCC----CCceeEEEEEEEC------CCCcEEE
Confidence 8753 2222 1224456778887 5667765
No 18
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.46 E-value=1.3e-06 Score=59.19 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=61.4
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEE-c--eeeeEEEeeecCCccEEEEEEEec
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV-S--TSMQSRVDALDRDNLYCKYTVFEE 82 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~-t--~~~kEri~~vDe~~~~~~y~vieG 82 (115)
++.++.|++|++++|++ +.|+.++ |+|.|. +++++++.|.+.--.++.. . ..+..++..+++ ++.+.|....|
T Consensus 2 v~~~i~I~ap~e~V~~~-~~D~~~~-~~w~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~-~~~i~~~~~~~ 77 (139)
T cd07817 2 VEKSITVNVPVEEVYDF-WRDFENL-PRFMSH-VESVEQLDDTRSHWKAKGPAGLSVEWDAEITEQVP-NERIAWRSVEG 77 (139)
T ss_pred eeEEEEeCCCHHHHHHH-HhChhhh-HHHhhh-hcEEEEcCCCceEEEEecCCCCcEEEEEEEeccCC-CCEEEEEECCC
Confidence 67899999999999999 5999994 999995 8889887552211111111 1 244555554444 44588887664
Q ss_pred CccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 83 DCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 83 ~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
. + .+..++.|+|. ++++|.+
T Consensus 78 ~-----~-~~~~~~~f~~~------~~~~T~v 97 (139)
T cd07817 78 A-----D-PNAGSVRFRPA------PGRGTRV 97 (139)
T ss_pred C-----C-CcceEEEEEEC------CCCCeEE
Confidence 3 1 34566778886 5556754
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.42 E-value=4.2e-06 Score=56.85 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=62.8
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccc-cEEEEc--eee--eEEEeeecCCccEEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVG-SIEVVS--TSM--QSRVDALDRDNLYCKYT 78 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~G-sir~~t--~~~--kEri~~vDe~~~~~~y~ 78 (115)
+++.++.+++|++++|++ +.|+.+ +|+|+|+ +++++.++++. ... .++..- ..+ .-++..+|+. +.+.++
T Consensus 2 ~~~~~~~i~a~~e~v~~~-l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (144)
T cd05018 2 KISGEFRIPAPPEEVWAA-LNDPEV-LARCIPG-CESLEKIGPNEYEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTIT 77 (144)
T ss_pred eeeeEEEecCCHHHHHHH-hcCHHH-HHhhccc-hhhccccCCCeEEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEEE
Confidence 578899999999999999 599998 5999996 77888776432 211 111111 122 3344444544 566666
Q ss_pred EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
....+. .....+..++.++|. ++||.+
T Consensus 78 ~~~~~~--~~~~~~~~~~~l~~~-------~~gT~v 104 (144)
T cd05018 78 GEGKGG--AGFVKGTARVTLEPD-------GGGTRL 104 (144)
T ss_pred EEEcCC--CceEEEEEEEEEEec-------CCcEEE
Confidence 554332 235678888999987 456755
No 20
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=98.41 E-value=6.5e-06 Score=58.43 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=66.7
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-cccc-EEEEc--eeeeEEEe---eecCCccEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGS-IEVVS--TSMQSRVD---ALDRDNLYCKY 77 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gs-ir~~t--~~~kEri~---~vDe~~~~~~y 77 (115)
..+++++|++||+++|+. +.|..++ |.|+|. ++++++++.++ +.|+ +..|. .-...... .+|...+.+.+
T Consensus 2 ~~~~si~i~a~~~~v~~l-vaDv~~~-P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~ 78 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDM-TNDIATW-PDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRA 78 (146)
T ss_pred cceeEEEEcCCHHHHHHH-HHhhhhh-hhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEE
Confidence 357899999999999999 7999995 999995 99999988754 5663 22233 11122221 37888888877
Q ss_pred EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.-.. + .++.+...+-+|+|. ++ ||.|
T Consensus 79 ~~~~-~---~p~~~m~~~W~f~~~------~~-gT~V 104 (146)
T cd08860 79 RRVE-T---GPFAYMNIRWEYTEV------PE-GTRM 104 (146)
T ss_pred EEec-C---CCcceeeeeEEEEEC------CC-CEEE
Confidence 4111 1 237777788888997 45 4765
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.35 E-value=7.8e-06 Score=55.24 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=58.0
Q ss_pred eccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEEEEEecCc
Q 044934 12 VAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKYTVFEEDC 84 (115)
Q Consensus 12 i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~vieG~~ 84 (115)
|++||+++|++ +.|..++ |.|+|. ++++++++.++. +..-.+. .....++....+.. +.+..++|+
T Consensus 1 V~ap~~~V~~~-i~D~e~~-~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~- 73 (130)
T PF03364_consen 1 VNAPPEEVWSV-ITDYENY-PRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPPER--IRFEQISGP- 73 (130)
T ss_dssp ESS-HHHHHHH-HTTGGGH-HHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECTTT--EEEESSETT-
T ss_pred CCCCHHHHHHH-HHHHHHH-HHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEeee--eeeeecCCC-
Confidence 68999999999 6999995 999995 999999988764 3222333 45666766444444 777776664
Q ss_pred cCcceEEEEEEEEEEec
Q 044934 85 ISDILELIVFQIKFGPY 101 (115)
Q Consensus 85 l~~~~~s~~~~i~v~p~ 101 (115)
++.+..+-++.|.
T Consensus 74 ----~~~~~g~W~~~~~ 86 (130)
T PF03364_consen 74 ----FKSFEGSWRFEPL 86 (130)
T ss_dssp ----EEEEEEEEEEEEE
T ss_pred ----chhcEEEEEEEEC
Confidence 7888888999998
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.28 E-value=9.8e-06 Score=56.45 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCc-------cccEE-EEceeeeEEEeeecCCccEEEEE
Q 044934 7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGE-------VGSIE-VVSTSMQSRVDALDRDNLYCKYT 78 (115)
Q Consensus 7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~-------~Gsir-~~t~~~kEri~~vDe~~~~~~y~ 78 (115)
+.++++++|++++|++ +.|..++ |.|.|+ +++++..+++.- .|.++ .++..+ ++..+|++++.+.++
T Consensus 2 ~~~~~v~a~pe~vw~~-l~D~~~~-~~~~pg-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ 76 (146)
T cd07823 2 ENEFTVPAPPDRVWAL-LLDIERV-APCLPG-ASLTEVEGDDEYKGTVKVKLGPISASFKGTA--RLLEDDEAARRAVLE 76 (146)
T ss_pred CceEEecCCHHHHHHH-hcCHHHH-HhcCCC-ceeccccCCCeEEEEEEEEEccEEEEEEEEE--EEEeccCCCcEEEEE
Confidence 5789999999999999 5998885 899996 888886543321 11221 111222 455556577888777
Q ss_pred EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.-..+.-...--....++++.|. +|||.+
T Consensus 77 ~~g~~~~~~g~~~~~~~~~l~~~-------~~gT~v 105 (146)
T cd07823 77 ATGKDARGQGTAEATVTLRLSPA-------GGGTRV 105 (146)
T ss_pred EEEecCCCcceEEEEEEEEEEec-------CCcEEE
Confidence 54311111111156677788876 456754
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.20 E-value=1.6e-05 Score=57.40 Aligned_cols=93 Identities=16% Similarity=0.311 Sum_probs=68.4
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKY 77 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y 77 (115)
.+..++.+++||+++|++ +.|..+ .|+|+|. .+++++++-++. +.+..++ ..+..|+. ++.++ .+.+
T Consensus 16 ~i~~~~~v~~s~~~v~~l-v~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~~ 89 (158)
T PRK10724 16 QISRTALVPYSAEQMYQL-VNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SILM 89 (158)
T ss_pred eEEEEEEecCCHHHHHHH-HHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEEE
Confidence 677889999999999999 799998 5999996 778788765432 2233343 45556655 45444 7999
Q ss_pred EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
++++|+ ++.+...-+|+|. ++++|.|
T Consensus 90 ~~~~Gp-----F~~l~g~W~f~p~------~~~~t~V 115 (158)
T PRK10724 90 QLVDGP-----FKKLIGGWKFTPL------SQEACRI 115 (158)
T ss_pred EecCCC-----hhhccceEEEEEC------CCCCEEE
Confidence 999874 5667777888898 6667876
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.82 E-value=0.00018 Score=49.12 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=55.2
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF 80 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi 80 (115)
+++.++.|+||++++|++| .|+.. +++|.|... .....|.+..|.++ +. ....-++..+++.+ .+.|+..
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~-td~~~-~~~W~~~~~--~~~~~~~~~~g~~~-~~~~~~~~~~~~i~~~~p~~-~l~~~~~ 75 (145)
T cd08898 2 RIERTILIDAPRERVWRAL-TDPEH-FGQWFGVKL--GPFVVGEGATGEIT-YPGYEHGVFPVTVVEVDPPR-RFSFRWH 75 (145)
T ss_pred eeEEEEEecCCHHHHHHHh-cChhh-hhhcccccC--CCcccCCcceeEEe-cCCCCccceEEEEEEeCCCc-EEEEEec
Confidence 5788999999999999995 89887 499999632 11111222223332 22 23344566565544 4456653
Q ss_pred ecC--c-c-CcceEEEEEEEEEEecccccccCCCceee
Q 044934 81 EED--C-I-SDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 81 eG~--~-l-~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.+. . . ...-.....++.|+|. + +||.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~gT~v 106 (145)
T cd08898 76 PPAIDPGEDYSAEPSTLVEFTLEPI------A-GGTLL 106 (145)
T ss_pred CCCcccccccCCCCceEEEEEEEec------C-CcEEE
Confidence 222 0 0 0011224467888887 4 45765
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.80 E-value=0.00024 Score=50.32 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=58.7
Q ss_pred ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--e----eeeEEEeeecCCccEE
Q 044934 2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--T----SMQSRVDALDRDNLYC 75 (115)
Q Consensus 2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--~----~~kEri~~vDe~~~~~ 75 (115)
|..++..+..|++|++++|++| .|+.+ ++.|.|.. .++-.+|+...++ . ...-++..+|+. +.+
T Consensus 9 ~~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~~~~~~~~v~e~~p~-~~l 78 (157)
T cd08899 9 GGATLRFERLLPAPIEDVWAAL-TDPER-LARWFAPG-------TGDLRVGGRVEFVMDDEEGPNATGTILACEPP-RLL 78 (157)
T ss_pred CCeEEEEEEecCCCHHHHHHHH-cCHHH-HHhhcCCC-------CCCcccCceEEEEecCCCCCccceEEEEEcCC-cEE
Confidence 3457899999999999999995 89887 59999932 1333455554444 2 356677767666 456
Q ss_pred EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.|+...++ .....++.|++. +|||.+
T Consensus 79 ~~~~~~~~------~~~~~~~~l~~~-------~~gT~v 104 (157)
T cd08899 79 AFTWGEGG------GESEVRFELAPE-------GDGTRL 104 (157)
T ss_pred EEEecCCC------CCceEEEEEEEc-------CCCEEE
Confidence 67665443 122456667776 356755
No 26
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=97.73 E-value=0.00049 Score=46.29 Aligned_cols=89 Identities=13% Similarity=-0.002 Sum_probs=52.8
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--e----eeeEEEeeecCCccEEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--T----SMQSRVDALDRDNLYCKYT 78 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--~----~~kEri~~vDe~~~~~~y~ 78 (115)
+++.++.|++|++++|++ +.|... +|.|.+... .+++..+|.--.+. . .+.=++.++++.+ .+.|+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~-~td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~ 72 (136)
T cd08893 1 KFVYVTYIRATPEKVWQA-LTDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGTVDVEGEVLESDPPR-RLVHT 72 (136)
T ss_pred CeEEEEEecCCHHHHHHH-HcCchh-hhheecccc-----cccCCcCCCeEEEEeCCCcccccceEEEEecCCC-eEEEE
Confidence 478899999999999999 489887 599998622 23444444433333 2 2345566676444 45566
Q ss_pred EEecCcc-CcceEEEEEEEEEEec
Q 044934 79 VFEEDCI-SDILELIVFQIKFGPY 101 (115)
Q Consensus 79 vieG~~l-~~~~~s~~~~i~v~p~ 101 (115)
.-.++.. ...-.....++.++|.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~l~~~ 96 (136)
T cd08893 73 WRAVWDPEMAAEPPSRVTFEIEPV 96 (136)
T ss_pred EecCCCcccCCCCCEEEEEEEEec
Confidence 5432221 0112234556667776
No 27
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=97.67 E-value=0.00055 Score=49.30 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=65.6
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEE----Eceee--eEEEeeecCCccEEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEV----VSTSM--QSRVDALDRDNLYCKYT 78 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~----~t~~~--kEri~~vDe~~~~~~y~ 78 (115)
.++-+..|++|++++|+. +.|+..+ ...+|+ ++|++ .+||.-.+.++. ++.++ +=++..+|+..++++..
T Consensus 2 ~~~G~f~V~~p~e~Vw~~-L~dpe~~-a~ciPG-~qs~e-~~g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEF-LNDPEQV-AACIPG-VQSVE-TNGDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred cccceEEecCCHHHHHHH-hcCHHHH-HhhcCC-cceee-ecCCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEE
Confidence 467789999999999999 6998885 679996 99998 456642222221 11333 44556677899999888
Q ss_pred EEecCccCcceEEEEEEEEEEec
Q 044934 79 VFEEDCISDILELIVFQIKFGPY 101 (115)
Q Consensus 79 vieG~~l~~~~~s~~~~i~v~p~ 101 (115)
.-+|.. ...-..+..++++|.
T Consensus 78 g~G~~~--~g~~~~~~~v~l~~~ 98 (146)
T COG3427 78 GSGGGA--AGFADGTVDVQLEPS 98 (146)
T ss_pred eecccc--cceeeeeeEEEEEEc
Confidence 766443 567778899999998
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.50 E-value=0.002 Score=44.80 Aligned_cols=95 Identities=9% Similarity=-0.021 Sum_probs=56.3
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCcc-EEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNL-YCK 76 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~-~~~ 76 (115)
++.+..+++|++++|++| .|... +.+|.+..--.+...+.|..+|..-.+. ..+.=++..+|+.++ .++
T Consensus 2 l~i~r~~~ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAH-TDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHh-CCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEE
Confidence 567788999999999995 88766 5788875423333445565555443332 123445666776543 344
Q ss_pred EEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
+.. ++.. .. ....++.+.|. +|||.+
T Consensus 80 ~~~-~~~~--~~--~s~v~~~l~~~-------~~gT~l 105 (142)
T cd07826 80 EEF-EGLP--DG--VALETVTFTEL-------GGRTRL 105 (142)
T ss_pred eEe-cCCC--CC--ceEEEEEEEEC-------CCCEEE
Confidence 443 3322 12 23557778886 456754
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.46 E-value=0.0029 Score=43.75 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=54.9
Q ss_pred EEEEEEeccCHHHHHHHHhccccccccccccc-ceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccE-E
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQ-AFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLY-C 75 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~-~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~-~ 75 (115)
+..+..+++|++++|+++ .|... +.+|... .--.++..+.|-.+|..-.+. ....=++..+|+.++. +
T Consensus 2 ~~i~r~~~ap~e~Vw~a~-tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAW-SDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDERIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHh-cCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCceEEE
Confidence 556788999999999995 88776 5888854 122233333444444332221 1345566777765544 3
Q ss_pred EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
++..-.++.- .. ....++.|+|. +|||.+
T Consensus 80 t~~~~~~~~~-~~--~s~v~~~l~~~-------~~gT~l 108 (143)
T cd08900 80 TYTMHIGGTL-LS--ASLATVEFAPE-------GGGTRL 108 (143)
T ss_pred EEeeccCCcc-cc--ceEEEEEEEEC-------CCCEEE
Confidence 4333323211 12 23467888887 456754
No 30
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.44 E-value=0.0031 Score=43.84 Aligned_cols=98 Identities=5% Similarity=-0.074 Sum_probs=53.8
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc------e--eeeEEEeeecCCccE-EE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS------T--SMQSRVDALDRDNLY-CK 76 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t------~--~~kEri~~vDe~~~~-~~ 76 (115)
+..+..++||++++|++| .|... +.+|.+..=-.+...+.|..+|..-.+. . ...-++..+|+.++. ++
T Consensus 2 l~i~r~i~a~~e~Vw~a~-t~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~l~~t 79 (146)
T cd08896 2 LVLSRTIDAPRELVWRAW-TEPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGERLVFT 79 (146)
T ss_pred eEEEEEeCCCHHHHHHHc-CCHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCCEEEEE
Confidence 456789999999999995 88666 4788763201122222333333322221 1 235667778876643 34
Q ss_pred EEEEec-CccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 77 YTVFEE-DCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 77 y~vieG-~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
+...++ ++..... ...++.|+|. +|||.+
T Consensus 80 ~~~~~~~~~~~~~~--~~v~~~~~~~-------~~gT~L 109 (146)
T cd08896 80 DALTPGWRPAEKPF--MTAIITFEDE-------GGGTRY 109 (146)
T ss_pred EeecCCcCCCCCCc--EEEEEEEEec-------CCcEEE
Confidence 333332 2211222 3457888887 456754
No 31
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.35 E-value=0.0023 Score=43.83 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=53.2
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceee--EEEEecCCccccEEEEc---------eeeeEEEeeecCCcc
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKS--IVYEQGYGEVGSIEVVS---------TSMQSRVDALDRDNL 73 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~s--ve~~eGdg~~Gsir~~t---------~~~kEri~~vDe~~~ 73 (115)
|++.++.++||++++|+++ .|... +.+|++. ... +...+.|..+|..-.+. ..+.-++..+++. +
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~-td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~ 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAW-TTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-K 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHh-CCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-C
Confidence 4678899999999999995 88666 5899643 111 11123454455443331 1124455556554 4
Q ss_pred EEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 74 YCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.+.|+...| ...++.++|. +|||.+
T Consensus 77 ~l~~~~~~~---------~~v~~~l~~~-------~~gT~l 101 (133)
T cd08897 77 LIEYTMEDG---------REVEVEFTEE-------GDGTKV 101 (133)
T ss_pred EEEEEcCCC---------CEEEEEEEEC-------CCCEEE
Confidence 455775321 2468888887 466765
No 32
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.21 E-value=0.0016 Score=48.76 Aligned_cols=71 Identities=8% Similarity=0.140 Sum_probs=56.1
Q ss_pred cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccE
Q 044934 3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLY 74 (115)
Q Consensus 3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~ 74 (115)
...++.+++|+.||+++|+.+ +|+.+| |.|+. .+.|+++++.+- -.|+ -+.+-+|. =|..+..
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W-~dLe~l-P~~Mk-hl~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~ 139 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYW-RDLENL-PLWMK-HLDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGER 139 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHH-Hhhhhh-hHHHH-hhceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcE
Confidence 467889999999999999996 999995 99998 599999997753 2233 23344555 4788888
Q ss_pred EEEEEEec
Q 044934 75 CKYTVFEE 82 (115)
Q Consensus 75 ~~y~vieG 82 (115)
+.+.=++|
T Consensus 140 I~W~Sl~G 147 (217)
T COG5637 140 IQWESLPG 147 (217)
T ss_pred EeeecCCC
Confidence 99999988
No 33
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.16 E-value=0.0079 Score=41.92 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=50.1
Q ss_pred EEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEE-Ec-----eeeeEEEeeecCCccEEEEEEEec
Q 044934 9 DGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEV-VS-----TSMQSRVDALDRDNLYCKYTVFEE 82 (115)
Q Consensus 9 ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~-~t-----~~~kEri~~vDe~~~~~~y~vieG 82 (115)
+.+|++|++++|+. +.|..++ -..+|+ +++++.+. +.-.+.++. +- -..+=++..+|++++.. .++-..
T Consensus 2 s~~v~a~~~~vw~~-l~D~~~l-~~ciPG-~~~~e~~~-~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~g~ 76 (140)
T PF06240_consen 2 SFEVPAPPEKVWAF-LSDPENL-ARCIPG-VESIEKVG-DEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYT-LEFEGR 76 (140)
T ss_dssp EEEECS-HHHHHHH-HT-HHHH-HHHSTT-EEEEEEEC-TEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cEEecCCHHHHHHH-hcCHHHH-HhhCCC-cEEeeecC-cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceE-eeeecc
Confidence 57899999999999 5998886 679996 99998876 432233321 11 12233555677777653 333333
Q ss_pred CccCcceEEEEEEEEEEec
Q 044934 83 DCISDILELIVFQIKFGPY 101 (115)
Q Consensus 83 ~~l~~~~~s~~~~i~v~p~ 101 (115)
+.. .-.+.+..+++...
T Consensus 77 g~~--~~~~~~~~~~~~~~ 93 (140)
T PF06240_consen 77 GRG--GGSSASANITLSLE 93 (140)
T ss_dssp ECT--CCEEEEEEEEEEEC
T ss_pred CCc--cceEEEEEEEEEcC
Confidence 332 12344555555555
No 34
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.16 E-value=0.012 Score=41.02 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=50.4
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccce-------eeEEEEecCCcc-ccEEEEc----eeeeEEEeeecCCcc
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAF-------KSIVYEQGYGEV-GSIEVVS----TSMQSRVDALDRDNL 73 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v-------~sve~~eGdg~~-Gsir~~t----~~~kEri~~vDe~~~ 73 (115)
+..++.|+||++++|+|| .| . +.+|.+..- ..+++ |..+ |..+... ....=++.++|+.++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~-t~--~-l~~W~~p~~~~~~~~~~~~~~---d~~~GG~~~~~~~~g~~~~~g~v~~v~p~~~ 74 (149)
T cd08891 2 VRKSVTVPAPPERAFEVF-TE--G-FGAWWPPEYHFVFSPGAEVVF---EPRAGGRWYEIGEDGTECEWGTVLAWEPPSR 74 (149)
T ss_pred eEEEEEecCCHHHHHHHH-Hh--c-hhhccCCCcccccCCCccEEE---cccCCcEEEEecCCCcEeceEEEEEEcCCCE
Confidence 578999999999999996 55 2 467765321 22222 2222 2232211 222346666776654
Q ss_pred EEEEEEE-ec--CccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 74 YCKYTVF-EE--DCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 74 ~~~y~vi-eG--~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.. |+-. .. .....+. -..++.|+|. +++||.+
T Consensus 75 l~-~tw~~~~~~~~~~~~~--t~vt~~l~~~------~~~gT~l 109 (149)
T cd08891 75 LV-FTWQINADWRPDPDKA--SEVEVRFEAV------GAEGTRV 109 (149)
T ss_pred EE-EEeccCCCcCcCCCCc--eEEEEEEEEC------CCCCeEE
Confidence 33 4432 11 1111222 2578888887 5367765
No 35
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.13 E-value=0.0071 Score=41.24 Aligned_cols=85 Identities=8% Similarity=0.086 Sum_probs=50.5
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCccE-EEEEEEecCc
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLY-CKYTVFEEDC 84 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~~-~~y~vieG~~ 84 (115)
++.+..++||++++|+|| .|... +.+|... ..+.+...| |..+...+.+.=++..+++.++. +++... +..
T Consensus 2 i~~~r~i~ap~e~Vw~A~-T~~e~-l~~W~~~-~~~~d~~~G----G~~~~~~g~~~g~~~~i~p~~~l~~~w~~~-~~~ 73 (126)
T cd08892 2 ISLTETFQVPAEELYEAL-TDEER-VQAFTRS-PAKVDAKVG----GKFSLFGGNITGEFVELVPGKKIVQKWRFK-SWP 73 (126)
T ss_pred eEEEEEECCCHHHHHHHH-CCHHH-HHhhcCC-CceecCCCC----CEEEEeCCceEEEEEEEcCCCEEEEEEEcC-CCC
Confidence 577899999999999995 88666 4788853 334444434 34444444445566777755443 344432 211
Q ss_pred cCcceEEEEEEEEEEec
Q 044934 85 ISDILELIVFQIKFGPY 101 (115)
Q Consensus 85 l~~~~~s~~~~i~v~p~ 101 (115)
. ... -..++.+++.
T Consensus 74 ~-~~~--s~v~~~l~~~ 87 (126)
T cd08892 74 E-GHY--STVTLTFTEK 87 (126)
T ss_pred C-CCc--EEEEEEEEEC
Confidence 1 122 3467777776
No 36
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.10 E-value=0.011 Score=40.59 Aligned_cols=92 Identities=10% Similarity=0.046 Sum_probs=52.9
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccc-cceeeEEEEecCCccccEEEEc------e--eeeEEEeeecCCccEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP-QAFKSIVYEQGYGEVGSIEVVS------T--SMQSRVDALDRDNLYCK 76 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P-~~v~sve~~eGdg~~Gsir~~t------~--~~kEri~~vDe~~~~~~ 76 (115)
++.+..+++|++++|++| .|... +.+|.+ +.+... ..+.|..+|..-.+. . ...-++.++++.+ .+.
T Consensus 2 l~~~r~i~ap~e~Vw~a~-t~p~~-l~~W~~p~~~~~~-~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAW-TDPEH-LAQWWGPEGFTNT-THEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHh-CCHHH-HhhccCcCCCcce-EEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence 567788999999999995 88766 488864 333222 223343344332221 1 1234666777655 344
Q ss_pred EEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
|+.-.++ .. ...++.|+|. +|||.+
T Consensus 78 ~t~~~~~----~~--~~v~~~~~~~-------~~gT~l 102 (139)
T cd08894 78 YDHGSGP----PR--FRLTVTFEEQ-------GGKTRL 102 (139)
T ss_pred EEeccCC----Cc--EEEEEEEEEC-------CCCEEE
Confidence 6653321 12 3467888887 467765
No 37
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.07 E-value=0.021 Score=39.61 Aligned_cols=30 Identities=33% Similarity=0.614 Sum_probs=24.8
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccc
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP 36 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P 36 (115)
+++.+..++||++++|+++ .|... +++|.+
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~-td~~~-~~~W~~ 30 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAF-LDPDA-LAKWLP 30 (146)
T ss_pred CEEEEEEECCCHHHHHHHH-cCHHH-HhhcCC
Confidence 3567788999999999995 88777 488876
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.89 E-value=0.018 Score=39.65 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=51.2
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----eeeeEEEeeecCCccEEEEEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----TSMQSRVDALDRDNLYCKYTVF 80 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~~~kEri~~vDe~~~~~~y~vi 80 (115)
.+.++.++||++++|++| .|... +.+|.+. -.+.++..| |.+ .|. ..+.=++..+|+. +.+.|+.-
T Consensus 2 ~~~~~~i~ap~e~Vw~a~-t~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~~~~~~g~~~~~~p~-~~l~~~w~ 72 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAF-VDPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMYGASVPVNVLEIEPN-KRIVIEWG 72 (136)
T ss_pred eeEEEEecCCHHHHHHHh-cCHHH-hcccccc-CCCccccCC----CEE-EEEEEccCCceEEEEEEEcCC-CEEEEEec
Confidence 467899999999999995 88776 4787553 224444333 222 222 2233355556544 44556643
Q ss_pred ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
.+ .... ..+++|++. ++|||.+
T Consensus 73 ~~----~~~s--~v~~~l~~~------~~ggT~l 94 (136)
T cd08901 73 DP----GEPT--TVEWTFEEL------DDGRTFV 94 (136)
T ss_pred CC----CCCE--EEEEEEEEC------CCCcEEE
Confidence 22 1222 357788887 4467764
No 39
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.88 E-value=0.041 Score=39.78 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=36.5
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG 49 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg 49 (115)
..+..+..+++||+++|+. +.|... .|+|.| .+.+++++|-++
T Consensus 41 ~~~k~~~~i~~s~e~v~~v-i~d~e~-~~~w~~-~~~~~~vie~~~ 83 (195)
T cd08876 41 KEFKAVAEVDASIEAFLAL-LRDTES-YPQWMP-NCKESRVLKRTD 83 (195)
T ss_pred EEEEEEEEEeCCHHHHHHH-HhhhHh-HHHHHh-hcceEEEeecCC
Confidence 4667788899999999999 589887 599999 499999988754
No 40
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.52 E-value=0.018 Score=39.93 Aligned_cols=87 Identities=15% Similarity=0.278 Sum_probs=48.3
Q ss_pred eccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCcc-EEEEEEEecCccCcceE
Q 044934 12 VAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNL-YCKYTVFEEDCISDILE 90 (115)
Q Consensus 12 i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~-~~~y~vieG~~l~~~~~ 90 (115)
++||++++|+|| .|... +.+|.=+....++...| |..+.+.+.+.=++..+|+.++ .++++.-+.+. ..++
T Consensus 1 f~ap~e~Vw~A~-Tdp~~-l~~w~~~~~~~~d~~~G----G~f~~~~~~~~G~~~ev~pp~rlv~tw~~~~~~~--~~~s 72 (132)
T PTZ00220 1 FYVPPEVLYNAF-LDAYT-LTRLSLGSPAEMDAKVG----GKFSLFNGSVEGEFTELEKPKKIVQKWRFRDWEE--DVYS 72 (132)
T ss_pred CCCCHHHHHHHH-cCHHH-HHHHhcCCCccccCCcC----CEEEEecCceEEEEEEEcCCCEEEEEEecCCCCC--CCce
Confidence 479999999995 88665 47774111223333333 3344443444446666776664 34454422111 2233
Q ss_pred EEEEEEEEEecccccccCCCceee
Q 044934 91 LIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 91 s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
..++.++|. ++|||.+
T Consensus 73 --~vt~~~~~~------~~g~T~l 88 (132)
T PTZ00220 73 --KVTIEFRAV------EEDHTEL 88 (132)
T ss_pred --EEEEEEEeC------CCCcEEE
Confidence 478888886 5567754
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=96.17 E-value=0.059 Score=35.46 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=47.7
Q ss_pred ccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEE-c-----eeeeEEEeeecCCccEEEEEEEecCccC
Q 044934 13 AAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV-S-----TSMQSRVDALDRDNLYCKYTVFEEDCIS 86 (115)
Q Consensus 13 ~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~-t-----~~~kEri~~vDe~~~~~~y~vieG~~l~ 86 (115)
+||++++|++| .|... +.+|.+..... .+..+|..-.+ . -...=++..+++.++ +.|+.--++..
T Consensus 1 ~ap~e~Vw~a~-t~~~~-~~~W~~~~~~~-----~~~~~Gg~~~~~~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~- 71 (124)
T PF08327_consen 1 DAPPERVWEAL-TDPEG-LAQWFTTSEAE-----MDFRPGGSFRFMDPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDP- 71 (124)
T ss_dssp SSSHHHHHHHH-HSHHH-HHHHSEEEEEE-----EECSTTEEEEEEETTSEEEEEEEEEEEEETTTE-EEEEEEEETSS-
T ss_pred CcCHHHHHHHH-CCHhH-HhhccCCCcce-----eeeecCCEEEEEecCCCCceeeEEEEEEeCCEE-EEEEEEccCCC-
Confidence 68999999995 88666 47883222222 33344444444 1 223334777777665 55664333322
Q ss_pred cceEEEEEEEEEEecccccccCCCceee
Q 044934 87 DILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 87 ~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
+ -.....++.|++. ++||.+
T Consensus 72 ~-~~~~~v~~~~~~~-------~~~T~l 91 (124)
T PF08327_consen 72 D-GPESRVTFEFEEE-------GGGTRL 91 (124)
T ss_dssp S-CEEEEEEEEEEEE-------TTEEEE
T ss_pred C-CCceEEEEEEEEc-------CCcEEE
Confidence 1 2234567777776 556754
No 42
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=95.80 E-value=0.026 Score=40.68 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=67.7
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKY 77 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y 77 (115)
+++...-++-+|+++|++ +.|.... |+.+|- -.+.++.+.+.. .-+-.++ +++.-|+. +++..+++.-
T Consensus 3 ~~~~s~lv~y~a~~mF~L-V~dV~~Y-P~FlP~-C~~s~v~~~~~~-~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 3 QIERTALVPYSASQMFDL-VNDVESY-PEFLPW-CSASRVLERNER-ELIAELDVGFKGIRETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred eeEeeeeccCCHHHHHHH-HHHHHhC-chhccc-cccceEeccCcc-eeEEEEEEEhhheeeeeeeeee-ecCchhhhhh
Confidence 567788899999999999 8998884 999995 667778888752 2344444 56666766 5555557777
Q ss_pred EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934 78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
++++|. ++.....=+|+|- ++++|.|
T Consensus 78 ~l~~GP-----Fk~L~~~W~F~pl------~~~~ckV 103 (146)
T COG2867 78 KLIDGP-----FKYLKGGWQFTPL------SEDACKV 103 (146)
T ss_pred hhhcCC-----hhhhcCceEEEEC------CCCceEE
Confidence 777664 5555666888896 5677865
No 43
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.22 Score=35.17 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=27.3
Q ss_pred cEEEEEEEEeccCHHHHHHHHhcccccccccccc
Q 044934 3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP 36 (115)
Q Consensus 3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P 36 (115)
..++..|..|++|++++|+|| .|... +++|+.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~-Tdpe~-l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEAL-TDPEL-LARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHh-cCHHH-HHhhcC
Confidence 457889999999999999995 88665 589987
No 44
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=94.32 E-value=1.3 Score=31.84 Aligned_cols=91 Identities=11% Similarity=0.213 Sum_probs=47.5
Q ss_pred EEEEEEeccCH--------HHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCC---
Q 044934 6 FDKDGSVAAAP--------SRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRD--- 71 (115)
Q Consensus 6 ~~~ei~i~a~a--------~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~--- 71 (115)
+++.++||-|. +++|+-+.....+ -....| .+.+|++++-. +..-.|.++ ..++|++....+.
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~~~v~E~v~~~~~~~V~ 78 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFGGATVRERVTLYPPERVD 78 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEETTEEEEEEEEEETTTEEE
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEECCcEEEEEEEEeCCcEEE
Confidence 55666666554 5799987654444 123555 69999999775 345567777 7888888743222
Q ss_pred -----ccEEEEEEEecCccCcceEEEEEEEEEEe
Q 044934 72 -----NLYCKYTVFEEDCISDILELIVFQIKFGP 100 (115)
Q Consensus 72 -----~~~~~y~vieG~~l~~~~~s~~~~i~v~p 100 (115)
.-+++-.+-|++. +.-|=.|.++..+..
T Consensus 79 f~~~~Gs~lt~~I~e~~~-g~L~ltf~ye~~~p~ 111 (149)
T PF08982_consen 79 FAQHDGSSLTNIISEPEP-GDLFLTFTYEWRLPG 111 (149)
T ss_dssp ESSSBEEEEEEEEEEEET-TEEEEEEEEEEE---
T ss_pred EEcCCCCEEEEEEecCCC-CcEEEEEEEEecccc
Confidence 1123334444443 255677777777643
No 45
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=93.16 E-value=0.95 Score=32.37 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=35.0
Q ss_pred CHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEee
Q 044934 15 APSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDA 67 (115)
Q Consensus 15 ~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~ 67 (115)
+.+++|+-+.....+ |..+-..+.+|++++.++. -..|.++ ..++|++..
T Consensus 18 Tr~QlW~GL~~kar~--p~~Fvp~i~~c~Vl~e~~~-~l~Rel~f~~~~v~e~vt~ 70 (141)
T cd08863 18 TRAQLWRGLVLRARE--PQLFVPGLDRCEVLSESGT-VLERELTFGPAKIRETVTL 70 (141)
T ss_pred CHHHHHhHHHhhhCC--chhcccccceEEEEecCCC-EEEEEEEECCceEEEEEEe
Confidence 457999997655554 4333336999999988752 4558888 678888774
No 46
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=91.49 E-value=5.3 Score=30.79 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=61.6
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc---------eeeeEEEee--ecCC
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS---------TSMQSRVDA--LDRD 71 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t---------~~~kEri~~--vDe~ 71 (115)
..+-.|..+++|++++|+. +.|... .++|-+ ...++++++-- ...+-++..+ ..+-.+-.. .|..
T Consensus 77 l~fk~e~~vd~s~~~v~dl-L~D~~~-R~~WD~-~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 77 LSFCVELKVQTCASDAFDL-LSDPFK-RPEWDP-HGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred eEEEEEEEecCCHHHHHHH-HhCcch-hhhhhh-cccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence 3467788899999999999 599887 699999 48899988742 2344344433 122211111 2222
Q ss_pred c-cEEEEEEEecCc--c---CcceEEEEEEEEEEecccccccCCCceee
Q 044934 72 N-LYCKYTVFEEDC--I---SDILELIVFQIKFGPYKLKKISSNASCLM 114 (115)
Q Consensus 72 ~-~~~~y~vieG~~--l---~~~~~s~~~~i~v~p~~~~~~~~~gg~~v 114 (115)
+ ..+...-+.-+. . --....+..-..+.|. ++|+|.+
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~------~~~~t~V 196 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQD------CGTCTEV 196 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEEC------CCCcEEE
Confidence 2 334444444111 1 1245677777888887 6777755
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=90.69 E-value=5.5 Score=29.85 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=37.1
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEV 56 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~ 56 (115)
+-.+.++++|++++|+. +.|..+ .++|.+ .+++.++++--+ ...-++.
T Consensus 47 ~~ge~~v~as~~~v~~l-l~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~ 95 (205)
T cd08874 47 FLGAGVIKAPLATVWKA-VKDPRT-RFLYDT-MIKTARIHKTFTEDICLVYL 95 (205)
T ss_pred EEEEEEEcCCHHHHHHH-HhCcch-hhhhHH-hhhheeeeeecCCCeEEEEE
Confidence 44577899999999999 599887 699999 699999988633 3333343
No 48
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=82.64 E-value=20 Score=27.66 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=39.2
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS 58 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t 58 (115)
..+-.+..+++|++++++. +.|..+ .|+|.++ ..++++++--+ ..- |..++
T Consensus 78 l~fk~e~~vdvs~~~l~~L-L~D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~ 129 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRL-LSDFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHIT 129 (236)
T ss_pred EEEEEEEEEcCCHHHHHHH-HhChhh-hchhHHh-hceEEEEEEeCCCcC-EEEEe
Confidence 4566778899999999999 599888 6999995 88888876633 222 66655
No 49
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=81.85 E-value=1.9 Score=32.24 Aligned_cols=41 Identities=5% Similarity=0.053 Sum_probs=32.6
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG 47 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG 47 (115)
.+-.+..+++|++++|.+++.|... .|+|.|+ +.++++++-
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~-~~~~~vi~~ 90 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVILQPEK-MVLWNKT-VSACQVLQR 90 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHhChhh-ccccCcc-chhhhheee
Confidence 4567888999999999643599888 5999995 888887755
No 50
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=75.04 E-value=36 Score=26.20 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=37.4
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec-CCccccEEEEc
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG-YGEVGSIEVVS 58 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG-dg~~Gsir~~t 58 (115)
.+-.+..+++|++++++. +.|... .|+|.++ +.++++++- |.... +.+++
T Consensus 82 ~fK~e~~vd~s~e~v~~l-L~D~~~-r~~Wd~~-~~e~~vIe~id~~~~-vY~v~ 132 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLL-LSDLRR-RPEWDKH-YRSCELVQQVDEDDA-IYHVT 132 (240)
T ss_pred EEEEEEEEcCCHHHHHHH-HhChhh-hhhhHhh-ccEEEEEEecCCCcE-EEEEe
Confidence 455677899999999999 499887 6999995 888888765 32332 55544
No 51
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=74.90 E-value=1.8 Score=32.17 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=31.8
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG 47 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG 47 (115)
+-.+..+++|++++|++++.|..+ .|+|.+. +.++++++-
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~ 90 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQR 90 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhh
Confidence 456788999999999775678777 5999995 888777655
No 52
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=71.81 E-value=32 Score=24.25 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=48.0
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccc--ccccc---ceeeEEEEecCC-ccccEEEEc--------------eeeeEEE
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFP--KLLPQ---AFKSIVYEQGYG-EVGSIEVVS--------------TSMQSRV 65 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~p--k~~P~---~v~sve~~eGdg-~~Gsir~~t--------------~~~kEri 65 (115)
++.++++++|++++|++| .|...+.- +.+.. .+.+++ ..||| .+=..+.+. ...-++.
T Consensus 1 f~~~~~~~~~~~~v~~~~-~d~~y~~~r~~~~g~~~~~~~~~~-~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~ 78 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAF-TDEDYWEARCAALGADNAEVESFE-VDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRT 78 (159)
T ss_pred CeEEEEcCCCHHHHHHHH-cCHHHHHHHHHHcCCCCceEEEEE-EcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence 467889999999999996 66443211 11211 234443 22333 111112122 1112333
Q ss_pred eee---cCCccEEEEEEEecCccCcceEEEEEEEEEEec
Q 044934 66 DAL---DRDNLYCKYTVFEEDCISDILELIVFQIKFGPY 101 (115)
Q Consensus 66 ~~v---De~~~~~~y~vieG~~l~~~~~s~~~~i~v~p~ 101 (115)
+.. ++..+..+|++--. ..--+++.++.+.|.
T Consensus 79 e~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~ 113 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPD 113 (159)
T ss_pred EEEecCCCCeEEEEEEEEec----CceEEEEEEEEEecC
Confidence 444 66777777775432 223467889999997
No 53
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=71.77 E-value=33 Score=24.40 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=42.1
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--eeeeEEEeeecCCccEEEEEEEec
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--TSMQSRVDALDRDNLYCKYTVFEE 82 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--~~~kEri~~vDe~~~~~~y~vieG 82 (115)
.++.++..+-+.+.+-..| .|+.-++|+++| .+++++ .+++-=-+-.+-.. -.++=++- +-.++=+|.|.+..|
T Consensus 2 ~~~~~i~t~H~~e~v~~IL-SDP~F~lp~l~p-~ik~v~-~~~~sF~~~g~~~~~~~~~~G~vy-~s~~~ItYvf~~~~g 77 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTIL-SDPEFVLPRLFP-PIKSVK-VEENSFRAEGKFGGFPFEMKGNVY-VSSNEITYVFNLAGG 77 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHH-T-HHHHHHHHST-TEEEEE--STTEEEEEEEETTEEEEEEEEEE-EETTEEEEEEE----
T ss_pred eEEEEeccCCChHheEEEe-cCCccEecccCC-ceEEEE-ecCCEEEEEEEEeeEEEEEEEEEE-EccceEEEEEEeecc
Confidence 3567888888999999995 999999999999 589998 44432111122111 22333322 444566666777666
Q ss_pred Cc
Q 044934 83 DC 84 (115)
Q Consensus 83 ~~ 84 (115)
.+
T Consensus 78 ~~ 79 (136)
T PF11485_consen 78 GP 79 (136)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 54
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=66.17 E-value=49 Score=24.14 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.6
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG 47 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG 47 (115)
+-.+..+++||+++|+.+..|.+. .++|-+. +..+++++.
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~ 89 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQV 89 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEE
Confidence 456778899999999875678776 6999995 777777665
No 55
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=57.51 E-value=58 Score=22.11 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=14.2
Q ss_pred EEEEeccCHHHHHHHHh
Q 044934 8 KDGSVAAAPSRMFKAFV 24 (115)
Q Consensus 8 ~ei~i~a~a~k~w~~~~ 24 (115)
.+..+++||+.+|+.+.
T Consensus 3 I~~~l~v~a~~ff~~l~ 19 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI 19 (120)
T ss_pred EEEEecCCHHHHHHHHH
Confidence 45679999999999863
No 56
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=55.27 E-value=66 Score=22.12 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=33.4
Q ss_pred EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC
Q 044934 5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG 49 (115)
Q Consensus 5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg 49 (115)
.+-.+.++++|++++|+++ .|... .++|-| .+.++++++-..
T Consensus 40 ~~k~~~~i~~~~~~v~~~l-~d~~~-~~~w~~-~~~~~~vl~~~~ 81 (193)
T cd00177 40 LLKAEGVIPASPEQVFELL-MDIDL-RKKWDK-NFEEFEVIEEID 81 (193)
T ss_pred eEEEEEEECCCHHHHHHHH-hCCch-hhchhh-cceEEEEEEEeC
Confidence 4556788899999999995 77555 699998 488889888743
No 57
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=54.98 E-value=78 Score=22.86 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=50.2
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc---------eeeeEEEee--ecCC
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS---------TSMQSRVDA--LDRD 71 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t---------~~~kEri~~--vDe~ 71 (115)
+++.....|++|.|.+|+-+ ...++| ..+.|..+ +-.-+|+- +.|+-..+. ...+-|+++ +|+-
T Consensus 2 ~tF~~~~~i~aP~E~VWafh-srpd~l-q~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFH-SRPDAL-QRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhh-cCccHH-HhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 46778889999999999874 555664 56666533 22223422 344433322 245566665 4433
Q ss_pred ccEEEEEEEecCccCcceEEEEEEEEEEec
Q 044934 72 NLYCKYTVFEEDCISDILELIVFQIKFGPY 101 (115)
Q Consensus 72 ~~~~~y~vieG~~l~~~~~s~~~~i~v~p~ 101 (115)
..++-..+.|..- -+ +..-+=+|.+.
T Consensus 78 -~~FtDv~i~gPfp--~~-~WrHtH~F~~e 103 (153)
T COG4276 78 -SRFTDVCITGPFP--AL-NWRHTHNFVDE 103 (153)
T ss_pred -ceeeeeeecCCcc--ce-eeEEEeeeecC
Confidence 3344555555432 12 35555666775
No 58
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=50.50 E-value=27 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=22.5
Q ss_pred cEEEEceeeeEEEeeecCCccEEEEEEEecCc
Q 044934 53 SIEVVSTSMQSRVDALDRDNLYCKYTVFEEDC 84 (115)
Q Consensus 53 sir~~t~~~kEri~~vDe~~~~~~y~vieG~~ 84 (115)
+|+.+-.+.-|| -+|..+++|+|.-|+|..
T Consensus 26 ~i~tlvks~DeR--YId~~~RtYtw~PI~gT~ 55 (94)
T PF08473_consen 26 TIRTLVKSQDER--YIDEVNRTYTWTPINGTD 55 (94)
T ss_pred EEEEEEeeccce--eeeeeceeEEEeccCCCc
Confidence 344444666676 489999999999999954
No 59
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=48.56 E-value=1.1e+02 Score=22.47 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=30.9
Q ss_pred EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934 4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG 47 (115)
Q Consensus 4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG 47 (115)
..+-.+-.+++|++++.+. +.|.. +.|+|.|...++ +.++.
T Consensus 46 ~~~k~e~~i~~~~~~~~~v-l~d~~-~~~~W~p~~~~~-~~l~~ 86 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLAL-LNEVE-LYKTWVPFCIRS-KKVKQ 86 (215)
T ss_pred EEEEEEEEecCChhHeEEE-Eehhh-hHhhhcccceee-EEEee
Confidence 4566788899999999999 58875 479999975444 45544
No 60
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=47.09 E-value=40 Score=24.58 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=31.2
Q ss_pred EEEEEEeccCHHHHHHHHhcc--cccccccccccceeeEEEEec
Q 044934 6 FDKDGSVAAAPSRMFKAFVID--SHNLFPKLLPQAFKSIVYEQG 47 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d--~~~l~pk~~P~~v~sve~~eG 47 (115)
+-.+..++++++++++. +.| ... .++|-+. +.++++++.
T Consensus 48 ~k~~~~i~~~~~~v~~~-l~d~~~~~-r~~Wd~~-~~~~~~le~ 88 (206)
T cd08867 48 YRAEGIVDALPEKVIDV-IIPPCGGL-RLKWDKS-LKHYEVLEK 88 (206)
T ss_pred EEEEEEEcCCHHHHHHH-HHhcCccc-ccccccc-ccceEEEEE
Confidence 56778899999999998 566 444 5899985 888888877
No 61
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=46.95 E-value=33 Score=25.35 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=31.1
Q ss_pred EEEEEEeccCHHHHHHHHhccccc-ccccccccceeeEEEEec
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHN-LFPKLLPQAFKSIVYEQG 47 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~-l~pk~~P~~v~sve~~eG 47 (115)
+-.|..++++++++|+.+ .|..+ ..++|-+. +.+++++|-
T Consensus 48 ~k~e~~i~~s~~~~~~~l-~d~~~~~r~~W~~~-~~~~~vle~ 88 (208)
T cd08903 48 YKGEGIVYATLEQVWDCL-KPAAGGLRVKWDQN-VKDFEVVEA 88 (208)
T ss_pred EEEEEEecCCHHHHHHHH-Hhccchhhhhhhhc-cccEEEEEE
Confidence 557888999999999995 55433 33899984 888888876
No 62
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=42.07 E-value=1.4e+02 Score=21.95 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=55.5
Q ss_pred EEEEEEEe-ccCHHHHHHHHhcccccccccccccceeeEEEEecCCcccc-EEEEc----------eeeeEEEeeecCCc
Q 044934 5 RFDKDGSV-AAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGS-IEVVS----------TSMQSRVDALDRDN 72 (115)
Q Consensus 5 ~~~~ei~i-~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gs-ir~~t----------~~~kEri~~vDe~~ 72 (115)
.+-.+.++ ++|++.++++ +.|... .++|.+. +.+.++++-+...++ |-.|. .++-.|-...|+++
T Consensus 46 ~~k~~~~~~d~s~~~~~~~-~~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNV-QLDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHH-HhCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 34555556 9999999999 488766 6999995 777888876433222 22232 35545544566665
Q ss_pred cE--EEEEEEec--Ccc---CcceEEEEEEEEEEec
Q 044934 73 LY--CKYTVFEE--DCI---SDILELIVFQIKFGPY 101 (115)
Q Consensus 73 ~~--~~y~vieG--~~l---~~~~~s~~~~i~v~p~ 101 (115)
.. +...-++- -+. .-...++.....++|.
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~ 158 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPH 158 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeC
Confidence 43 22222331 111 1245667777777775
No 63
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=29.32 E-value=2.3e+02 Score=20.68 Aligned_cols=95 Identities=8% Similarity=-0.070 Sum_probs=54.0
Q ss_pred EEEEEEEEe-ccCHHHHHHHHhcccccccccccccceeeEEEEecCCcccc-EEEEc----------eeeeEEEeeec-C
Q 044934 4 LRFDKDGSV-AAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGS-IEVVS----------TSMQSRVDALD-R 70 (115)
Q Consensus 4 ~~~~~ei~i-~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gs-ir~~t----------~~~kEri~~vD-e 70 (115)
..+-.+.++ ++|++.++++ +.|... .++|.+. +.+.++++-+...|+ |-.|. .++-.|....| +
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~-l~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 126 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDF-YWDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD 126 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHH-HcChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC
Confidence 345566777 6799999999 588765 7999995 666777766543122 22222 34444433344 4
Q ss_pred CccEEEEEEEecCc--c--CcceEEEEEEEEEEec
Q 044934 71 DNLYCKYTVFEEDC--I--SDILELIVFQIKFGPY 101 (115)
Q Consensus 71 ~~~~~~y~vieG~~--l--~~~~~s~~~~i~v~p~ 101 (115)
....+....+.-.. . ...+..|.....++|.
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~ 161 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAV 161 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEe
Confidence 44444333333211 1 1246667777777774
No 64
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=25.54 E-value=1.3e+02 Score=22.49 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=30.4
Q ss_pred EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934 6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG 47 (115)
Q Consensus 6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG 47 (115)
+-.|..++++++++|+.+ .|... ..+|-| .+.+++++|-
T Consensus 48 ~k~egvi~~~~e~v~~~l-~~~e~-r~~Wd~-~~~~~~iie~ 86 (204)
T cd08904 48 YRVEGIIPESPAKLIQFM-YQPEH-RIKWDK-SLQVYKMLQR 86 (204)
T ss_pred EEEEEEecCCHHHHHHHH-hccch-hhhhcc-cccceeeEEE
Confidence 446788999999999995 55333 589999 6888888865
No 65
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.29 E-value=70 Score=19.82 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=13.3
Q ss_pred EeccCHHHHHHHHhcccc
Q 044934 11 SVAAAPSRMFKAFVIDSH 28 (115)
Q Consensus 11 ~i~a~a~k~w~~~~~d~~ 28 (115)
+--++|..+|.+++.++.
T Consensus 41 ~~G~dpr~VW~AlC~~~d 58 (63)
T PF11248_consen 41 EAGVDPRDVWRALCDAFD 58 (63)
T ss_pred HcCCCHHHHHHHHHHHcC
Confidence 345789999999766654
No 66
>PF10339 Vel1p: Yeast-specific zinc responsive; InterPro: IPR019435 This entry represents putative velum formation proteins found in fungi. They are of unknown function but are highly induced in zinc-depleted conditions and have increased expression in NAP1 deletion mutants [].
Probab=20.39 E-value=66 Score=23.99 Aligned_cols=26 Identities=8% Similarity=0.355 Sum_probs=18.5
Q ss_pred EEeccCHHHHHHHHhccccccccccc
Q 044934 10 GSVAAAPSRMFKAFVIDSHNLFPKLL 35 (115)
Q Consensus 10 i~i~a~a~k~w~~~~~d~~~l~pk~~ 35 (115)
-.+.-+++.+|+.|..+-..++|++.
T Consensus 58 daLt~~a~daw~R~L~qE~RfiPrLt 83 (203)
T PF10339_consen 58 DALTESAGDAWGRYLEQETRFIPRLT 83 (203)
T ss_pred hhhccchhHHHHHHhccCccccccee
Confidence 34667899999998766555556554
Done!