Query 044935
Match_columns 683
No_of_seqs 378 out of 3479
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-61 2.9E-66 535.7 27.7 588 2-656 218-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-53 2.7E-58 499.4 36.1 581 8-662 267-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 2.8E-27 6.1E-32 238.1 4.3 199 8-209 66-283 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.1E-25 2.4E-30 264.8 16.8 351 273-658 70-464 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.6E-25 3.5E-30 263.4 14.3 350 272-658 118-487 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.6E-26 7.7E-31 229.7 -4.8 322 272-661 55-377 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 5.8E-24 1.2E-28 213.9 -4.3 310 272-654 78-394 (1255)
8 KOG4194 Membrane glycoprotein 99.9 1.7E-22 3.6E-27 202.2 3.3 127 272-412 102-231 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 4.9E-23 1.1E-27 197.2 -1.9 142 272-429 68-209 (565)
10 PLN03210 Resistant to P. syrin 99.8 1.2E-20 2.7E-25 222.0 17.1 312 272-639 589-910 (1153)
11 KOG4194 Membrane glycoprotein 99.8 5.4E-21 1.2E-25 191.5 4.1 326 264-654 117-447 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 1.7E-21 3.6E-26 186.8 -10.7 348 272-657 45-469 (565)
13 KOG0618 Serine/threonine phosp 99.6 1E-17 2.3E-22 177.2 -1.6 330 298-657 44-418 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 4.5E-15 9.8E-20 162.4 13.6 260 275-640 204-463 (788)
15 KOG0618 Serine/threonine phosp 99.5 1.3E-16 2.7E-21 169.1 -4.9 347 277-656 3-393 (1081)
16 PRK15370 E3 ubiquitin-protein 99.5 2E-14 4.3E-19 158.5 10.2 121 273-419 179-299 (754)
17 PRK15370 E3 ubiquitin-protein 99.5 3.1E-14 6.7E-19 157.0 8.1 103 299-421 178-280 (754)
18 PRK15387 E3 ubiquitin-protein 99.5 2.6E-13 5.7E-18 148.7 14.9 234 272-602 222-455 (788)
19 cd00116 LRR_RI Leucine-rich re 99.5 9.7E-15 2.1E-19 149.7 0.4 91 321-412 18-118 (319)
20 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.3E-20 130.2 -5.7 163 324-554 31-194 (264)
21 KOG4237 Extracellular matrix p 99.4 1.4E-14 3E-19 139.6 -0.3 262 272-564 67-354 (498)
22 KOG0617 Ras suppressor protein 99.4 1.7E-14 3.7E-19 122.8 -4.3 126 273-412 34-160 (264)
23 cd00116 LRR_RI Leucine-rich re 99.3 3.1E-13 6.8E-18 138.5 2.9 119 296-414 20-149 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.3 2.2E-12 4.8E-17 144.7 7.3 314 272-641 545-866 (889)
25 KOG4237 Extracellular matrix p 99.3 1.7E-13 3.7E-18 132.1 -1.6 296 281-634 55-358 (498)
26 KOG4341 F-box protein containi 99.0 2.3E-11 5.1E-16 118.7 -1.6 167 499-683 286-457 (483)
27 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.6E-16 124.0 -4.3 192 274-544 77-271 (722)
28 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.4E-16 123.5 -4.7 212 277-566 55-270 (722)
29 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 107.6 1.7 137 272-415 121-259 (505)
30 KOG4341 F-box protein containi 98.8 3E-10 6.5E-15 111.1 -2.3 270 327-665 139-420 (483)
31 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.9E-14 107.2 1.5 245 343-656 110-364 (505)
32 KOG1909 Ran GTPase-activating 98.8 7E-10 1.5E-14 106.2 -1.0 150 463-634 154-310 (382)
33 KOG1909 Ran GTPase-activating 98.7 1.9E-09 4.1E-14 103.3 0.6 150 500-658 150-310 (382)
34 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.5E-13 91.9 4.9 102 298-412 18-123 (175)
35 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.3E-13 108.0 5.2 92 322-421 112-204 (394)
36 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.7E-13 107.6 3.5 180 298-551 115-295 (394)
37 PF14580 LRR_9: Leucine-rich r 98.7 1.9E-08 4.2E-13 90.5 4.0 134 322-476 15-150 (175)
38 KOG1259 Nischarin, modulator o 98.5 2.1E-08 4.6E-13 93.8 0.6 57 353-412 283-339 (490)
39 KOG1259 Nischarin, modulator o 98.5 2E-08 4.4E-13 94.0 -0.0 124 272-412 284-409 (490)
40 PLN03150 hypothetical protein; 98.4 6.1E-07 1.3E-11 99.3 7.9 92 328-423 420-511 (623)
41 KOG2120 SCF ubiquitin ligase, 98.3 7.2E-08 1.6E-12 90.4 -1.6 186 326-567 185-374 (419)
42 PLN03150 hypothetical protein; 98.3 9.6E-07 2.1E-11 97.7 6.3 107 301-414 420-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 63.5 4.2 15 351-365 22-36 (61)
44 KOG2120 SCF ubiquitin ligase, 98.2 6.7E-08 1.4E-12 90.6 -4.4 164 461-657 205-374 (419)
45 PF13855 LRR_8: Leucine rich r 98.1 2.2E-06 4.7E-11 63.1 3.8 58 354-413 1-60 (61)
46 KOG2982 Uncharacterized conser 98.1 1.7E-06 3.8E-11 81.3 3.5 207 296-564 68-287 (418)
47 PRK15386 type III secretion pr 98.1 9.3E-06 2E-10 82.3 7.9 65 322-396 48-112 (426)
48 KOG0531 Protein phosphatase 1, 98.0 9.9E-07 2.2E-11 93.2 -0.8 103 298-413 71-173 (414)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 54.2 3.6 34 355-389 2-35 (44)
50 PRK15386 type III secretion pr 97.9 2.6E-05 5.6E-10 79.2 7.6 39 328-372 74-112 (426)
51 KOG0531 Protein phosphatase 1, 97.9 2.2E-06 4.8E-11 90.6 -0.2 105 296-413 92-197 (414)
52 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4.2E-10 53.0 4.0 41 326-372 1-41 (44)
53 COG5238 RNA1 Ran GTPase-activa 97.8 8.4E-06 1.8E-10 75.8 1.3 272 298-634 29-315 (388)
54 KOG4579 Leucine-rich repeat (L 97.7 6.3E-06 1.4E-10 68.6 -0.6 84 322-412 49-133 (177)
55 KOG1859 Leucine-rich repeat pr 97.7 8.8E-06 1.9E-10 85.8 -0.3 21 265-285 102-122 (1096)
56 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.8E-10 86.7 2.3 107 298-412 121-230 (699)
57 KOG3665 ZYG-1-like serine/thre 97.6 5.9E-05 1.3E-09 83.4 5.1 133 272-414 122-262 (699)
58 PRK04841 transcriptional regul 97.4 0.0055 1.2E-07 72.5 18.8 201 30-249 108-332 (903)
59 KOG4579 Leucine-rich repeat (L 97.3 4.6E-05 1E-09 63.6 -0.3 112 276-398 31-142 (177)
60 COG5238 RNA1 Ran GTPase-activa 97.3 9.3E-05 2E-09 69.1 1.6 243 272-565 30-312 (388)
61 KOG2982 Uncharacterized conser 97.3 8.7E-05 1.9E-09 70.2 1.3 192 323-572 68-265 (418)
62 KOG1859 Leucine-rich repeat pr 97.2 1.3E-05 2.8E-10 84.5 -5.5 124 272-413 164-290 (1096)
63 KOG1947 Leucine rich repeat pr 96.7 0.00029 6.3E-09 76.7 -1.0 42 622-663 401-444 (482)
64 KOG1947 Leucine rich repeat pr 96.7 0.00028 6E-09 76.9 -1.6 37 626-662 380-417 (482)
65 KOG1644 U2-associated snRNP A' 96.5 0.0041 8.8E-08 56.0 5.1 102 299-412 42-150 (233)
66 KOG1644 U2-associated snRNP A' 96.1 0.0089 1.9E-07 53.9 4.6 65 500-566 57-123 (233)
67 KOG2739 Leucine-rich acidic nu 95.7 0.0057 1.2E-07 57.5 2.1 84 322-413 39-127 (260)
68 KOG2739 Leucine-rich acidic nu 95.7 0.0056 1.2E-07 57.6 2.0 105 298-412 42-153 (260)
69 PF00560 LRR_1: Leucine Rich R 95.4 0.0071 1.5E-07 33.6 0.9 17 356-373 2-18 (22)
70 KOG2123 Uncharacterized conser 95.4 0.0015 3.3E-08 61.5 -3.0 99 298-408 18-123 (388)
71 KOG2123 Uncharacterized conser 94.9 0.0025 5.4E-08 60.1 -3.0 81 325-414 18-100 (388)
72 COG2909 MalT ATP-dependent tra 94.7 1.4 3.1E-05 49.0 16.6 208 26-248 112-337 (894)
73 PF00560 LRR_1: Leucine Rich R 94.7 0.014 3.1E-07 32.3 0.9 21 379-400 1-21 (22)
74 KOG3864 Uncharacterized conser 93.9 0.0074 1.6E-07 54.4 -2.0 65 590-658 123-188 (221)
75 KOG0473 Leucine-rich repeat pr 93.5 0.0036 7.8E-08 57.4 -4.9 82 298-389 41-122 (326)
76 PF13504 LRR_7: Leucine rich r 93.1 0.068 1.5E-06 27.4 1.5 15 355-370 2-16 (17)
77 PF13504 LRR_7: Leucine rich r 93.0 0.066 1.4E-06 27.5 1.4 17 622-639 1-17 (17)
78 PRK00411 cdc6 cell division co 93.0 10 0.00022 39.8 19.4 220 7-238 101-374 (394)
79 KOG3864 Uncharacterized conser 92.9 0.0067 1.5E-07 54.7 -4.0 36 591-631 150-185 (221)
80 TIGR03015 pepcterm_ATPase puta 92.5 4.1 8.9E-05 40.2 14.7 125 8-135 87-242 (269)
81 KOG0473 Leucine-rich repeat pr 91.9 0.0053 1.1E-07 56.4 -6.0 87 322-415 38-124 (326)
82 PF13306 LRR_5: Leucine rich r 90.2 0.91 2E-05 38.8 6.5 58 502-564 7-66 (129)
83 PF13306 LRR_5: Leucine rich r 89.1 1.4 3E-05 37.6 6.8 101 296-411 9-112 (129)
84 smart00369 LRR_TYP Leucine-ric 86.1 0.67 1.5E-05 26.7 2.0 18 354-372 2-19 (26)
85 smart00370 LRR Leucine-rich re 86.1 0.67 1.5E-05 26.7 2.0 18 354-372 2-19 (26)
86 PF13173 AAA_14: AAA domain 84.6 1.7 3.8E-05 37.2 4.8 54 30-85 50-103 (128)
87 smart00370 LRR Leucine-rich re 83.5 0.71 1.5E-05 26.6 1.3 21 377-398 1-21 (26)
88 smart00369 LRR_TYP Leucine-ric 83.5 0.71 1.5E-05 26.6 1.3 21 377-398 1-21 (26)
89 TIGR00635 ruvB Holliday juncti 81.2 16 0.00034 36.8 11.0 96 111-222 181-287 (305)
90 KOG4308 LRR-containing protein 80.9 0.051 1.1E-06 57.9 -7.4 111 301-412 89-214 (478)
91 PF13401 AAA_22: AAA domain; P 80.9 3 6.5E-05 35.7 4.9 70 8-80 54-125 (131)
92 smart00367 LRR_CC Leucine-rich 80.7 0.8 1.7E-05 26.5 0.8 19 645-663 1-19 (26)
93 PF05729 NACHT: NACHT domain 75.3 4 8.8E-05 36.5 4.3 45 39-83 79-132 (166)
94 KOG4308 LRR-containing protein 75.2 0.082 1.8E-06 56.3 -7.8 140 274-413 89-244 (478)
95 PRK00080 ruvB Holliday junctio 74.6 35 0.00076 34.8 11.4 104 112-223 203-309 (328)
96 PRK06893 DNA replication initi 71.2 7.4 0.00016 37.3 5.2 40 42-81 92-134 (229)
97 COG3903 Predicted ATPase [Gene 69.8 5.9 0.00013 40.5 4.2 189 29-223 76-291 (414)
98 TIGR02928 orc1/cdc6 family rep 65.3 1.7E+02 0.0037 30.1 20.1 48 6-53 89-141 (365)
99 smart00364 LRR_BAC Leucine-ric 63.7 4.3 9.3E-05 23.5 1.1 17 355-372 3-19 (26)
100 COG3899 Predicted ATPase [Gene 62.5 39 0.00084 39.4 9.5 157 39-202 152-333 (849)
101 PF13516 LRR_6: Leucine Rich r 62.0 3.5 7.5E-05 23.1 0.5 11 379-389 3-13 (24)
102 PRK07003 DNA polymerase III su 59.8 1E+02 0.0022 35.1 11.5 43 40-82 118-160 (830)
103 PRK07471 DNA polymerase III su 59.2 63 0.0014 33.4 9.5 43 40-82 140-182 (365)
104 PRK05564 DNA polymerase III su 56.8 67 0.0014 32.5 9.2 44 39-82 91-134 (313)
105 cd00561 CobA_CobO_BtuR ATP:cor 53.7 22 0.00048 31.7 4.4 52 30-81 83-138 (159)
106 smart00365 LRR_SD22 Leucine-ri 50.7 12 0.00026 21.7 1.5 12 354-365 2-13 (26)
107 PRK13342 recombination factor 49.2 2.1E+02 0.0046 30.2 11.9 46 28-76 78-124 (413)
108 cd00009 AAA The AAA+ (ATPases 48.3 31 0.00067 29.5 4.7 45 38-82 81-131 (151)
109 PF02463 SMC_N: RecF/RecN/SMC 44.9 21 0.00045 33.9 3.2 48 40-87 157-205 (220)
110 PRK06645 DNA polymerase III su 44.3 1.4E+02 0.0031 32.4 9.6 41 39-79 126-166 (507)
111 KOG0989 Replication factor C, 43.7 73 0.0016 31.6 6.4 39 43-81 131-169 (346)
112 TIGR00678 holB DNA polymerase 43.0 52 0.0011 30.2 5.5 42 40-81 95-136 (188)
113 KOG3763 mRNA export factor TAP 42.8 13 0.00027 39.7 1.4 37 352-389 242-281 (585)
114 PF01637 Arch_ATPase: Archaeal 42.0 1E+02 0.0022 29.1 7.6 20 111-130 214-233 (234)
115 PRK09112 DNA polymerase III su 40.9 2.3E+02 0.0051 29.1 10.2 89 40-132 140-241 (351)
116 PRK05986 cob(I)alamin adenolsy 40.1 49 0.0011 30.4 4.6 54 28-81 101-158 (191)
117 smart00368 LRR_RI Leucine rich 39.8 20 0.00043 21.1 1.4 11 355-365 3-13 (28)
118 TIGR00708 cobA cob(I)alamin ad 38.5 65 0.0014 29.1 5.0 55 27-81 82-140 (173)
119 PF02572 CobA_CobO_BtuR: ATP:c 38.2 67 0.0015 29.0 5.1 56 27-82 81-140 (172)
120 PRK07414 cob(I)yrinic acid a,c 37.1 83 0.0018 28.6 5.5 54 28-81 101-158 (178)
121 PRK12323 DNA polymerase III su 37.0 2.3E+02 0.005 31.8 9.7 43 39-81 122-164 (700)
122 COG1474 CDC6 Cdc6-related prot 36.3 4.9E+02 0.011 27.0 11.7 47 4-51 85-133 (366)
123 COG2109 BtuR ATP:corrinoid ade 35.2 98 0.0021 28.3 5.5 56 26-81 106-165 (198)
124 PRK07940 DNA polymerase III su 34.5 2.5E+02 0.0054 29.5 9.3 42 40-81 116-157 (394)
125 PRK05707 DNA polymerase III su 33.8 2.8E+02 0.0061 28.2 9.4 43 40-82 105-147 (328)
126 TIGR02903 spore_lon_C ATP-depe 33.5 55 0.0012 36.6 4.7 53 29-81 280-334 (615)
127 PF13177 DNA_pol3_delta2: DNA 33.4 62 0.0014 28.9 4.2 43 40-82 101-143 (162)
128 PF00004 AAA: ATPase family as 32.3 1.7E+02 0.0037 24.4 6.8 57 25-81 41-112 (132)
129 PF05673 DUF815: Protein of un 31.6 1.3E+02 0.0029 28.9 6.1 75 8-85 68-155 (249)
130 PRK14963 DNA polymerase III su 31.5 3.5E+02 0.0076 29.5 10.1 41 40-80 115-155 (504)
131 KOG3763 mRNA export factor TAP 31.2 21 0.00046 38.0 0.9 81 464-563 216-308 (585)
132 TIGR02397 dnaX_nterm DNA polym 29.2 3.5E+02 0.0075 27.7 9.6 42 40-81 116-157 (355)
133 TIGR03420 DnaA_homol_Hda DnaA 28.5 1.3E+02 0.0027 28.5 5.7 39 43-81 92-133 (226)
134 PF14050 Nudc_N: N-terminal co 27.7 1.1E+02 0.0023 22.3 3.7 31 110-140 3-33 (62)
135 PRK14961 DNA polymerase III su 27.0 2.6E+02 0.0056 28.9 8.0 42 40-81 118-159 (363)
136 PRK09087 hypothetical protein; 26.0 2.3E+02 0.0049 27.0 6.8 37 43-80 89-126 (226)
137 PRK08485 DNA polymerase III su 23.3 3.1E+02 0.0067 25.5 6.7 78 3-82 10-95 (206)
138 PTZ00112 origin recognition co 22.7 1.1E+03 0.025 27.9 12.1 44 8-51 833-879 (1164)
139 PF02562 PhoH: PhoH-like prote 22.3 63 0.0014 30.2 2.2 39 42-83 120-158 (205)
140 PRK14950 DNA polymerase III su 22.0 5.3E+02 0.012 28.8 9.7 41 40-80 119-159 (585)
141 COG1373 Predicted ATPase (AAA+ 21.1 2.1E+02 0.0046 30.0 6.1 40 41-83 94-133 (398)
142 TIGR01069 mutS2 MutS2 family p 21.0 1.6E+02 0.0035 34.0 5.5 106 40-150 401-519 (771)
143 PRK08691 DNA polymerase III su 20.9 2.3E+02 0.005 32.0 6.4 42 40-81 118-159 (709)
144 PRK14957 DNA polymerase III su 20.8 2.1E+02 0.0046 31.4 6.1 54 28-81 105-159 (546)
145 PRK06090 DNA polymerase III su 20.4 7.9E+02 0.017 24.9 9.7 85 40-131 107-201 (319)
146 PRK08769 DNA polymerase III su 20.1 8.3E+02 0.018 24.7 9.8 88 40-132 112-209 (319)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-61 Score=535.69 Aligned_cols=588 Identities=28% Similarity=0.432 Sum_probs=426.0
Q ss_pred CCcccH---HHHHHHHHcCCCCC-CCchhHHHHHHHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEE
Q 044935 2 KGEPFI---EARAIIEALKPGST-KDLVEFQSLMQHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILIT 77 (683)
Q Consensus 2 ~s~~~~---l~~~il~~~~~~~~-~~~~~~~~~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivT 77 (683)
||++|+ ++++|++.++.... -.....++++..|.+.|+.|||+|||||||++ .+|+.|..++|...+||||++|
T Consensus 218 VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlT 295 (889)
T KOG4658|consen 218 VSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLT 295 (889)
T ss_pred EcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEE
Confidence 788888 99999999983232 22234489999999999999999999999987 5699999999999999999999
Q ss_pred ecCchhhhc-cCCcchHHH-----------HHHhhcCC-CCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHH
Q 044935 78 TRNETTAHN-MGSTNIIQL-----------MFSFLGKS-MEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEW 144 (683)
Q Consensus 78 Tr~~~v~~~-~~~~~~~~l-----------l~~~~~~~-~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w 144 (683)
||++.||.. ++....+++ |....+.. ....+.++++|++++++|+|+|||+.++|+.|+.|.+.++|
T Consensus 296 TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW 375 (889)
T KOG4658|consen 296 TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEW 375 (889)
T ss_pred eccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHH
Confidence 999999998 777666655 44444333 33335589999999999999999999999999999999999
Q ss_pred HHHHHhhhhc----cccccccchHHHHHhhcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHHhCcHH-----------
Q 044935 145 KNILESEIWE----HEVVKKGLLAPLLLSYNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMAQGYLN----------- 209 (683)
Q Consensus 145 ~~~l~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~----------- 209 (683)
+++.+...+. .....+.+++++++||+.||++.|.||+|||.||+|+.|.+++|+.+|+||||+.
T Consensus 376 ~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~ 455 (889)
T KOG4658|consen 376 RRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDV 455 (889)
T ss_pred HHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcc
Confidence 9999875544 2223467999999999999999999999999999999999999999999999884
Q ss_pred --HHHHHHHhcCCceeecCCCCCCeeEEehhHHHHHHHHHHhh-----cceeEeecC-CCccccccccccCceEEEEEEe
Q 044935 210 --EYFNILASSSFFQEFNADGDGEVYMCKMHDLVHDLAQFIWR-----NECLTVKIP-GGEESIMSSFEQKKVLHLMLTI 281 (683)
Q Consensus 210 --~~l~~L~~~~ll~~~~~~~~g~~~~~~mhdl~~~~~~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~ 281 (683)
.++.+|++++|+...... ++...|+|||+||++|.+++. +++.++..+ +..+.+....+ ..+|++++.+
T Consensus 456 G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~s~~~ 532 (889)
T KOG4658|consen 456 GYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRMSLMN 532 (889)
T ss_pred hHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEEEEec
Confidence 789999999999876543 667789999999999999999 666555543 33333322222 6889999999
Q ss_pred cCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEee
Q 044935 282 DEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSL 361 (683)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L 361 (683)
+.+..++.... +++|++|.+.+|.. +.....+.+|..++.|++|||++| ..+.++|+.|+.|.+||||++
T Consensus 533 ~~~~~~~~~~~-----~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~----~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 533 NKIEHIAGSSE-----NPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGN----SSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred cchhhccCCCC-----CCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCC----CccCcCChHHhhhhhhhcccc
Confidence 99887766553 67899999999862 233445667899999999999984 667899999999999999999
Q ss_pred cCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCC
Q 044935 362 FGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLR 441 (683)
Q Consensus 362 ~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~ 441 (683)
+++. +..+|..+.+|++|.+|++..+..+..+|.....|++|++|.+.... ...... .+.++..|..|+
T Consensus 603 ~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~----~~~~~~------~l~el~~Le~L~ 671 (889)
T KOG4658|consen 603 SDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA----LSNDKL------LLKELENLEHLE 671 (889)
T ss_pred cCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc----cccchh------hHHhhhcccchh
Confidence 9999 99999999999999999999988777776666779999999987653 111111 223333444444
Q ss_pred CeeEcCCCCCCChhHhHHhccccCCCCCe----EEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeee
Q 044935 442 ECWICGRGGVSDAGEARRAELEQKKNLLK----LGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEY 517 (683)
Q Consensus 442 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 517 (683)
.+.+..... .....+..+..|.+ +.+.++ .....+..+..+.+|+.|.+.++
T Consensus 672 ~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~------------------~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 672 NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGC------------------SKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred hheeecchh------HhHhhhhhhHHHHHHhHhhhhccc------------------ccceeecccccccCcceEEEEcC
Confidence 444322111 00111122222221 221111 12334556677788888888888
Q ss_pred cCCCCccCcch-----Hhh-ccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccc
Q 044935 518 RGRRNVVPINW-----IMS-LTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAF 591 (683)
Q Consensus 518 ~~~~~~~~~~~-----~~~-l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 591 (683)
.+.... ..+ ... ++++..+.+.+|.....+......|+|+.|.+..|..++..-+....... ....+..|
T Consensus 728 ~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f 803 (889)
T KOG4658|consen 728 GISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPF 803 (889)
T ss_pred CCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecc
Confidence 876421 112 112 55677777777766665555556788888888888777665443222110 00012345
Q ss_pred cccccc-cccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCC
Q 044935 592 PKLKRL-AFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGC 656 (683)
Q Consensus 592 ~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 656 (683)
+++..+ .+.+.+.+..+.. .|- .+++|+.+.+..||+++.+|. +.++.+.+|
T Consensus 804 ~~~~~l~~~~~l~~l~~i~~---~~l---~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 804 NKLEGLRMLCSLGGLPQLYW---LPL---SFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred cccccceeeecCCCCceeEe---ccc---CccchhheehhcCcccccCcc-------ccccceecc
Confidence 666666 3554444444332 121 356688888888887776653 344555555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-53 Score=499.38 Aligned_cols=581 Identities=23% Similarity=0.306 Sum_probs=383.2
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhhhcc
Q 044935 8 EARAIIEALKPGSTKDLVEFQSLMQHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTAHNM 87 (683)
Q Consensus 8 l~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~~~ 87 (683)
++++++.++.......... ...+++.+++||+||||||||+. .+|+.+.....+.++||+||||||+++++..+
T Consensus 267 l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~ 340 (1153)
T PLN03210 267 LQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAH 340 (1153)
T ss_pred HHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc
Confidence 4556666665122111111 14578889999999999999865 57999988778888999999999999998776
Q ss_pred CCcch-----------HHHHHHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhhhhccc
Q 044935 88 GSTNI-----------IQLMFSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESEIWEHE 156 (683)
Q Consensus 88 ~~~~~-----------~~ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~~~~~~ 156 (683)
+.+.. .++|+.++++...+++++.+++++|+++|+|+|||++++|+.|+++ +.++|+.++++...
T Consensus 341 ~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~--- 416 (1153)
T PLN03210 341 GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN--- 416 (1153)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh---
Confidence 55443 3446555555545567799999999999999999999999999987 78999999987443
Q ss_pred cccccchHHHHHhhcCCCh-hhHHHhhhhccCCCCeeeChHHHHHHHHHhCcHH--HHHHHHHhcCCceeecCCCCCCee
Q 044935 157 VVKKGLLAPLLLSYNELPS-KVKHYFSYCAVFPKDREIWKYELIKLWMAQGYLN--EYFNILASSSFFQEFNADGDGEVY 233 (683)
Q Consensus 157 ~~~~~~~~~l~~sy~~L~~-~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~--~~l~~L~~~~ll~~~~~~~~g~~~ 233 (683)
....+++++|++||++|++ ..|.||+++|+||.+..+ +.+..|.+.+.+. ..++.|++++|++... +
T Consensus 417 ~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~----~--- 486 (1153)
T PLN03210 417 GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVNIGLKNLVDKSLIHVRE----D--- 486 (1153)
T ss_pred CccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCchhChHHHHhcCCEEEcC----C---
Confidence 2345799999999999987 599999999999988654 4577788776654 4589999999997642 2
Q ss_pred EEehhHHHHHHHHHHhhcceeEeecCCCccccc----------cccccCceEEEEEEecCCCCcccccchhhhccCCccE
Q 044935 234 MCKMHDLVHDLAQFIWRNECLTVKIPGGEESIM----------SSFEQKKVLHLMLTIDEGTSVPISIWNNVKRMRRLRS 303 (683)
Q Consensus 234 ~~~mhdl~~~~~~~~~~~e~~~~~~~~~~~~~~----------~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~ 303 (683)
.++|||++|+||+++++++.. .++.....+ .......++.+++.......+.. ....|.+|++|+.
T Consensus 487 ~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i-~~~aF~~m~~L~~ 562 (1153)
T PLN03210 487 IVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI-HENAFKGMRNLLF 562 (1153)
T ss_pred eEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee-cHHHHhcCccccE
Confidence 379999999999999987631 111111111 11112456666665554433211 1234556777777
Q ss_pred EEEeCCCCcc---ccccchhhhcC-----------------------CCceeEEEecccCCcccCcccccccccCCCCCc
Q 044935 304 LSVEGGEYSW---SSKVLPQLFDK-----------------------LTCLRAITLETYGWDYNPIKEIPTNIKNLLHLK 357 (683)
Q Consensus 304 L~l~~~~~~~---~~~~~~~~~~~-----------------------l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~ 357 (683)
|.+..+.... ....+|..|.. +.+|+.|++++ +.+..+|..+..+++|+
T Consensus 563 L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~-----s~l~~L~~~~~~l~~Lk 637 (1153)
T PLN03210 563 LKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQG-----SKLEKLWDGVHSLTGLR 637 (1153)
T ss_pred EEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcC-----ccccccccccccCCCCC
Confidence 7775542100 01112332333 34555555555 45556666677777777
Q ss_pred EEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccC
Q 044935 358 YLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKL 437 (683)
Q Consensus 358 ~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L 437 (683)
+|+|++|..++.+|. ++.+++|++|+|++|..+..+|..++++++|+.|++++|..+..+|..+ ++++|+.+
T Consensus 638 ~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L------ 709 (1153)
T PLN03210 638 NIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL------ 709 (1153)
T ss_pred EEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE------
Confidence 777777666677775 6777777777777777777777777777777777777777777776654 33333322
Q ss_pred ccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcc----cccCCCCchhHHHHH--------hhhcCC
Q 044935 438 NLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEE----QAGRRENEEDEAERL--------LEALGP 505 (683)
Q Consensus 438 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~~ 505 (683)
.+.+...... .+ ....+|+.|+++++.+...+.. .+..+.........+ +.....
T Consensus 710 ------~Lsgc~~L~~----~p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 710 ------NLSGCSRLKS----FP---DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred ------eCCCCCCccc----cc---cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhc
Confidence 1111111000 00 0112344444444432211100 000000000000000 111223
Q ss_pred CCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCC
Q 044935 506 PPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDG 585 (683)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 585 (683)
+++|+.|++++|..... + |.+++.+++|+.|++++|..++.+|....+++|+.|++++|..++..+.
T Consensus 777 ~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~----------- 843 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD----------- 843 (1153)
T ss_pred cccchheeCCCCCCccc-c-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----------
Confidence 56888888888765442 4 7778888889999998888777787755788889999988876654322
Q ss_pred cccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcchHHH
Q 044935 586 SSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPILEER 662 (683)
Q Consensus 586 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~ 662 (683)
..++|+.|++.++ .+ ..+|..+..+++|+.|++++|+.++.+|..+..+++|+.+++++|+.+...
T Consensus 844 ----~~~nL~~L~Ls~n------~i-~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 844 ----ISTNISDLNLSRT------GI-EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ----cccccCEeECCCC------CC-ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 1356777765443 33 235777888999999999999999999998888999999999999987643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.93 E-value=2.8e-27 Score=238.14 Aligned_cols=199 Identities=34% Similarity=0.606 Sum_probs=150.8
Q ss_pred HHHHHHHHcCCCCCC---CchhHHHHHHHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhh
Q 044935 8 EARAIIEALKPGSTK---DLVEFQSLMQHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTA 84 (683)
Q Consensus 8 l~~~il~~~~~~~~~---~~~~~~~~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~ 84 (683)
++++|++++. .... ...+.++..+.+++.|+++|+||||||||+. ..|+.+...++....||+||||||+..++
T Consensus 66 ~~~~i~~~l~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~ 142 (287)
T PF00931_consen 66 LLEQILRQLG-EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVA 142 (287)
T ss_dssp HHHHHHHHHT-CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGG
T ss_pred cccccccccc-ccccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccc
Confidence 8889999998 4422 4577888999999999999999999999875 47888888888888899999999999988
Q ss_pred hccCC-cc-----------hHHHHHHhhcCCC-CCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhh
Q 044935 85 HNMGS-TN-----------IIQLMFSFLGKSM-EGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESE 151 (683)
Q Consensus 85 ~~~~~-~~-----------~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~ 151 (683)
..+.. .. ..++|....+... .......+.+++|++.|+|+|+|++++|++|+.+.+..+|+++++..
T Consensus 143 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l 222 (287)
T PF00931_consen 143 GSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEEL 222 (287)
T ss_dssp TTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76543 22 3444544444332 23455677899999999999999999999997665778899998764
Q ss_pred hhcccc---ccccchHHHHHhhcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHHhCcHH
Q 044935 152 IWEHEV---VKKGLLAPLLLSYNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMAQGYLN 209 (683)
Q Consensus 152 ~~~~~~---~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~ 209 (683)
...... ....++.++.+||+.|+++.|.||+|||+||+++.++++.++.+|+++|++.
T Consensus 223 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 223 ENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 433322 2467999999999999999999999999999999999999999999999874
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.1e-25 Score=264.78 Aligned_cols=351 Identities=20% Similarity=0.229 Sum_probs=190.4
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchh-hhcCCCceeEEEecccCCcc-----------
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQ-LFDKLTCLRAITLETYGWDY----------- 340 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~----------- 340 (683)
+++.+.+..+.+.... ...+..+++|++|++++|.+. ..+|. .+.++++|++|+|++|.+..
T Consensus 70 ~v~~L~L~~~~i~~~~---~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~ 143 (968)
T PLN00113 70 RVVSIDLSGKNISGKI---SSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143 (968)
T ss_pred cEEEEEecCCCccccC---ChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCccccCCCC
Confidence 4555555554433221 112333555555555555432 11222 23355555555555533220
Q ss_pred ------cCc-ccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCc
Q 044935 341 ------NPI-KEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 341 ------~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 413 (683)
+.+ ..+|..++.+++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 111 2345555566666666666665344555556666666666666555444555556666666666666655
Q ss_pred cccccccccCCCCCCCCc------------cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC
Q 044935 414 SLRFLPVGIGELISLRNL------------GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG 481 (683)
Q Consensus 414 ~~~~~p~~~~~l~~L~~l------------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 481 (683)
....+|..++++++|+.+ ..+..++.|+.+.+.... .....+..+..+++|+.|++++|.+
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~l--- 296 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK----LSGPIPPSIFSLQKLISLDLSDNSL--- 296 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe----eeccCchhHhhccCcCEEECcCCee---
Confidence 444555555555554422 112222233333222110 0111223334444455555544442
Q ss_pred CcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcce
Q 044935 482 DEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLED 560 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 560 (683)
...++..+..+++|+.|++++|.... ..|.++..+++|+.|++++|.+.+.+|. ++.+++|+.
T Consensus 297 --------------~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 297 --------------SGEIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360 (968)
T ss_pred --------------ccCCChhHcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence 22345566677788888888777665 3366777788888888888877666665 777788888
Q ss_pred EEecCCCCeeEecccccCCC------------CCCCCcccccccccccccccccccccccccccccccccccCCcccEEe
Q 044935 561 LHILGMESVKRVGNKFLGVE------------SDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLS 628 (683)
Q Consensus 561 L~L~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 628 (683)
|+++++......+..+.... ..........+++|+.|.+.+ +.+++..|..+..+++|+.|+
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~------n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD------NSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC------CEeeeECChhHhcCCCCCEEE
Confidence 88876543222222111100 000111223466677774443 444555677777888888888
Q ss_pred ecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 629 IDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 629 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
+++|...+.+|..+..+++|+.|++++|..
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCcee
Confidence 888887777777777788888998888863
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.6e-25 Score=263.38 Aligned_cols=350 Identities=19% Similarity=0.180 Sum_probs=203.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++++.+.++.+....+. ..+++|++|++++|.+. ..+|..++++++|++|+|++|.+. ..+|..++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~-----~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~ 185 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR-----GSIPNLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLV----GKIPNSLT 185 (968)
T ss_pred CCCCEEECcCCccccccCc-----cccCCCCEEECcCCccc---ccCChHHhcCCCCCEEECccCccc----ccCChhhh
Confidence 4555555555544321111 12555666666665532 335555666666666666663221 34566666
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.+
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 66666666666666444566666666666666666665444566666666666666666665555566666665555522
Q ss_pred ------------cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccC------CCCch
Q 044935 432 ------------GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGR------RENEE 493 (683)
Q Consensus 432 ------------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~ 493 (683)
..+..+..|+.+.+.... .....+..+..+++|+.|++++|.+.+..+..+.. +....
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCe----eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 122233344444443211 11223344556666666666666543322211100 00011
Q ss_pred h-HHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeE
Q 044935 494 D-EAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKR 571 (683)
Q Consensus 494 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~ 571 (683)
+ ....++..++.+++|+.|++++|..... + |.++..+++|+.|++++|.+.+.+|. ++.+++|+.|++.+|.....
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~-~-p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGE-I-PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCCCeeEee-C-ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 1 1123445556666777777776665541 2 56666667777777777766665555 67777888888866543222
Q ss_pred ecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceE
Q 044935 572 VGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRL 651 (683)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 651 (683)
.+.. ...+++|+.|++++ +.+.+..|..+..+++|+.|++++|...+.+|..+. .++|+.|
T Consensus 420 ~p~~------------~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L 480 (968)
T PLN00113 420 LPSE------------FTKLPLVYFLDISN------NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENL 480 (968)
T ss_pred CChh------------HhcCCCCCEEECcC------CcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEE
Confidence 2221 23578888886554 455556677777899999999999998888887654 7899999
Q ss_pred EEeCCcc
Q 044935 652 EIYGCPI 658 (683)
Q Consensus 652 ~l~~c~~ 658 (683)
++++|..
T Consensus 481 ~ls~n~l 487 (968)
T PLN00113 481 DLSRNQF 487 (968)
T ss_pred ECcCCcc
Confidence 9999963
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.6e-26 Score=229.68 Aligned_cols=322 Identities=21% Similarity=0.196 Sum_probs=220.5
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
.++.|+++..+....+...+.. ++.||++.+..|++. ..+ +|..+-.+..|.+|+|+. |.+++.|..+.
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~----Lp~LRsv~~R~N~LK-nsG-iP~diF~l~dLt~lDLSh-----NqL~EvP~~LE 123 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSD----LPRLRSVIVRDNNLK-NSG-IPTDIFRLKDLTILDLSH-----NQLREVPTNLE 123 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhcc----chhhHHHhhhccccc-cCC-CCchhcccccceeeecch-----hhhhhcchhhh
Confidence 5566666666665554444443 666777777666653 222 444455677777777777 56667777777
Q ss_pred CCCCCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRN 430 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 430 (683)
+-+++-.|+||+|. |+.+|.. +-+|..|-.|||++|. ++.+|+.+..|..|++|++++|... .. .
T Consensus 124 ~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~------hf------Q 189 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLN------HF------Q 189 (1255)
T ss_pred hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhh------HH------H
Confidence 77777777777776 7777744 3467777777777665 7777777777777777777766321 11 1
Q ss_pred ccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCcc
Q 044935 431 LGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLK 510 (683)
Q Consensus 431 l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 510 (683)
+..|+.++.|..+. +.........+|.++..+.+|..++++.|.+ ..+|+.+..+++|+
T Consensus 190 LrQLPsmtsL~vLh---ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L------------------p~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLH---MSNTQRTLDNIPTSLDDLHNLRDVDLSENNL------------------PIVPECLYKLRNLR 248 (1255)
T ss_pred HhcCccchhhhhhh---cccccchhhcCCCchhhhhhhhhccccccCC------------------CcchHHHhhhhhhh
Confidence 22223333333333 3344555667788888999999999998873 45688888999999
Q ss_pred EEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCccccc
Q 044935 511 ELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIA 590 (683)
Q Consensus 511 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 590 (683)
.|+|++|.+.. + .-....-.+|+.|+++.|++...+..+..+++|+.|.+.+.. -.|.|++ +.++.
T Consensus 249 rLNLS~N~ite--L-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk------L~FeGiP-----SGIGK 314 (1255)
T KOG0444|consen 249 RLNLSGNKITE--L-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK------LTFEGIP-----SGIGK 314 (1255)
T ss_pred eeccCcCceee--e-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc------ccccCCc-----cchhh
Confidence 99999999888 5 444566788999999999765544448899999999884421 2234433 34566
Q ss_pred ccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcchHH
Q 044935 591 FPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPILEE 661 (683)
Q Consensus 591 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 661 (683)
+-.|+.+...++ .+ ...|..++.|+.|++|.|+.|. +-.+|..+.-++.|+.||+..||.+.-
T Consensus 315 L~~Levf~aanN------~L-ElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 315 LIQLEVFHAANN------KL-ELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhHHHHhhcc------cc-ccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccC
Confidence 777777744432 22 4578889999999999998887 556999999899999999999987653
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=5.8e-24 Score=213.92 Aligned_cols=310 Identities=22% Similarity=0.316 Sum_probs=232.6
Q ss_pred CceEEEEEEecCCC--CcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc
Q 044935 272 KKVLHLMLTIDEGT--SVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN 349 (683)
Q Consensus 272 ~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~ 349 (683)
+.+|.+.+..+... .+|..++. +..|.+|+++.|++ ...|..+.+.+++-+|+|++ |.|+.+|..
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~----l~dLt~lDLShNqL----~EvP~~LE~AKn~iVLNLS~-----N~IetIPn~ 144 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFR----LKDLTILDLSHNQL----REVPTNLEYAKNSIVLNLSY-----NNIETIPNS 144 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcc----cccceeeecchhhh----hhcchhhhhhcCcEEEEccc-----CccccCCch
Confidence 56777777777554 37778887 99999999999986 45788899999999999999 788999965
Q ss_pred -ccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhc-ccccccccccceEecCCCcc-ccccccccCCCC
Q 044935 350 -IKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGTNS-LRFLPVGIGELI 426 (683)
Q Consensus 350 -i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~-~~~~p~~~~~l~ 426 (683)
+.+|..|-+||||+|. ++.+|+.+.+|.+|++|+|++|. +..+ -..+..|++|+.|.+++.+. +..+|.++..|.
T Consensus 145 lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred HHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 6789999999999999 99999999999999999999997 4322 13344678889999988753 346776665554
Q ss_pred CCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCC
Q 044935 427 SLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPP 506 (683)
Q Consensus 427 ~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (683)
+|..+. ++ .+.....|..+-++.+|+.|++++|.++. +....+..
T Consensus 223 NL~dvD------------lS-----~N~Lp~vPecly~l~~LrrLNLS~N~ite------------------L~~~~~~W 267 (1255)
T KOG0444|consen 223 NLRDVD------------LS-----ENNLPIVPECLYKLRNLRRLNLSGNKITE------------------LNMTEGEW 267 (1255)
T ss_pred hhhhcc------------cc-----ccCCCcchHHHhhhhhhheeccCcCceee------------------eeccHHHH
Confidence 444321 11 01112234567788999999999998533 23344456
Q ss_pred CCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCC-CCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCC
Q 044935 507 PNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNC-EHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTD 584 (683)
Q Consensus 507 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 584 (683)
.+|++|+++.|.... + |..++.+++|++|.+.+|++. +.+|. +|.+.+|+.+...+ +.++-.++.+.
T Consensus 268 ~~lEtLNlSrNQLt~--L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglc------- 336 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTV--L-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLC------- 336 (1255)
T ss_pred hhhhhhccccchhcc--c-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhh-------
Confidence 799999999999988 7 899999999999999999743 34555 99999999998854 34555554443
Q ss_pred CcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEe
Q 044935 585 GSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIY 654 (683)
Q Consensus 585 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 654 (683)
.|++|+.|. |..+.+ ..+|+.+.-+|-|++|+++.|+.+-..|.--..-.+|+.-+|.
T Consensus 337 -----RC~kL~kL~------L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 337 -----RCVKLQKLK------LDHNRL-ITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred -----hhHHHHHhc------ccccce-eechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 489999995 444444 3578889899999999999999987666533323455554443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-22 Score=202.20 Aligned_cols=127 Identities=25% Similarity=0.270 Sum_probs=68.2
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i 350 (683)
+++..+.+..+..+.+|..... ..+|+.|++.+|.++ ..-...++.++.||+|||+. |.+.++|. ++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~----sghl~~L~L~~N~I~---sv~se~L~~l~alrslDLSr-----N~is~i~~~sf 169 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHE----SGHLEKLDLRHNLIS---SVTSEELSALPALRSLDLSR-----NLISEIPKPSF 169 (873)
T ss_pred Ccceeeeeccchhhhccccccc----ccceeEEeeeccccc---cccHHHHHhHhhhhhhhhhh-----chhhcccCCCC
Confidence 3444444555554444443333 444555555555432 22233345555666666666 33344442 23
Q ss_pred cCCCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcccc-cccccccceEecCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEGT 412 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 412 (683)
..-.++++|+|++|. ++.+- ..|..|.+|.+|.|+.|. ++.+|.. +.+|++|+.|++..|
T Consensus 170 p~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred CCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc
Confidence 334566777777766 55543 346666677777777665 6666643 344777777777666
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=4.9e-23 Score=197.19 Aligned_cols=142 Identities=28% Similarity=0.387 Sum_probs=121.3
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..+..+.++.+.....|+.+.+ +..+..++++.|.. ..+|..+..+..|+.|+.++ +.+.++|++++
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~----l~~l~~l~vs~n~l----s~lp~~i~s~~~l~~l~~s~-----n~~~el~~~i~ 134 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGE----LEALKSLNVSHNKL----SELPEQIGSLISLVKLDCSS-----NELKELPDSIG 134 (565)
T ss_pred cceeEEEeccchhhhCCHHHHH----HHHHHHhhcccchH----hhccHHHhhhhhhhhhhccc-----cceeecCchHH
Confidence 4677788888888888888876 88899999999875 34677788899999999988 77789999999
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
.+..|..|+..+|. +..+|+.++.+.+|..|++.+|. +..+|+..-.|+.|++||...| .++.+|+.++.|.+|.
T Consensus 135 ~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLE 209 (565)
T ss_pred HHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhH
Confidence 99999999999888 89999999999999999999887 7888877766999999998887 6788999888877765
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.2e-20 Score=221.97 Aligned_cols=312 Identities=23% Similarity=0.271 Sum_probs=224.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+.+..+....+|..+. ..+|+.|++.++.+ ..++..+..+++|+.|+|+++ ..+..+|. ++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~-----~~~L~~L~L~~s~l----~~L~~~~~~l~~Lk~L~Ls~~----~~l~~ip~-ls 654 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFR-----PENLVKLQMQGSKL----EKLWDGVHSLTGLRNIDLRGS----KNLKEIPD-LS 654 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCC-----ccCCcEEECcCccc----cccccccccCCCCCEEECCCC----CCcCcCCc-cc
Confidence 468888888888887877653 78899999999875 335666788999999999984 34677775 88
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCC--
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR-- 429 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~-- 429 (683)
.+++|++|++++|..+..+|..++++++|++|++++|..++.+|..+ ++++|++|++++|..+..+|....+++.|.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence 89999999999999899999999999999999999999899999877 799999999999988877776544443332
Q ss_pred -----CccccccCccCCCeeEcCCCCCC---ChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhh
Q 044935 430 -----NLGSLKKLNLLRECWICGRGGVS---DAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLE 501 (683)
Q Consensus 430 -----~l~~l~~L~~L~~l~i~~~~~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (683)
.++....+.+|..+.+....... ......+......++|+.|++++|. ....+|.
T Consensus 734 ~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----------------~l~~lP~ 796 (1153)
T PLN03210 734 ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----------------SLVELPS 796 (1153)
T ss_pred CCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC-----------------CccccCh
Confidence 11111122333333332211100 0000001112234678888888876 2344677
Q ss_pred hcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCC
Q 044935 502 ALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVES 581 (683)
Q Consensus 502 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 581 (683)
.++.+++|+.|++++|..... + |..+ .+++|+.|++++|.....+|.+ .++|+.|++.++. ++.++.
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~-L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~------- 863 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLET-L-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPW------- 863 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCe-e-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChH-------
Confidence 888999999999998865442 5 4443 7899999999999887777654 3689999986532 222221
Q ss_pred CCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCC
Q 044935 582 DTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALP 639 (683)
Q Consensus 582 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 639 (683)
.+..+++|+.|++.+|.+|..++. .+..+++|+.+++++|+.+..++
T Consensus 864 -----si~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 -----WIEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -----HHhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCccccccc
Confidence 234688999999999998887543 45578999999999998877554
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=5.4e-21 Score=191.50 Aligned_cols=326 Identities=20% Similarity=0.187 Sum_probs=228.4
Q ss_pred ccccccccCceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCc
Q 044935 264 SIMSSFEQKKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPI 343 (683)
Q Consensus 264 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 343 (683)
.|.......++.++.+..+.+.++... .++.++.||+|+++.|.++.+. ...|..-.+++.|+|++ |.|
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se---~L~~l~alrslDLSrN~is~i~---~~sfp~~~ni~~L~La~-----N~I 185 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSE---ELSALPALRSLDLSRNLISEIP---KPSFPAKVNIKKLNLAS-----NRI 185 (873)
T ss_pred cccccccccceeEEeeeccccccccHH---HHHhHhhhhhhhhhhchhhccc---CCCCCCCCCceEEeecc-----ccc
Confidence 343344446899999999988766543 3445899999999999875433 23366667899999999 555
Q ss_pred cccc-ccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhc-ccccccccccceEecCCCcccccccc
Q 044935 344 KEIP-TNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGTNSLRFLPV 420 (683)
Q Consensus 344 ~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~ 420 (683)
..+. ..|..+.+|-.|.|+.|. +..+|. .|.+|++|+.|+|..|. ++.. -..+.+|++|+.|.+..|. +..+-.
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~-I~kL~D 262 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRND-ISKLDD 262 (873)
T ss_pred cccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcC-cccccC
Confidence 5554 458889999999999999 999985 56679999999999987 5544 3567899999999998884 333333
Q ss_pred c-cCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHH
Q 044935 421 G-IGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERL 499 (683)
Q Consensus 421 ~-~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (683)
+ |..|.+++ .++ |. .+........++.+++.|+.|+++.|.+. .--
T Consensus 263 G~Fy~l~kme------~l~-L~---------~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-----------------rih 309 (873)
T KOG4194|consen 263 GAFYGLEKME------HLN-LE---------TNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-----------------RIH 309 (873)
T ss_pred cceeeecccc------eee-cc---------cchhhhhhcccccccchhhhhccchhhhh-----------------eee
Confidence 2 22222222 211 11 12223333456778899999999998732 223
Q ss_pred hhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccC
Q 044935 500 LEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLG 578 (683)
Q Consensus 500 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~ 578 (683)
++++..+++|+.|+|+.|.+.. ++++.+..++.|+.|.|+.|.+.-.-.. +..+.+|+.|+|++...--.+... .
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-a- 385 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-A- 385 (873)
T ss_pred cchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc-h-
Confidence 5677788999999999999988 8888999999999999999865432222 778899999999764421111110 0
Q ss_pred CCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEe
Q 044935 579 VESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIY 654 (683)
Q Consensus 579 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 654 (683)
..-.++|+|+.|.+.++ .+..+....|..+++|+.|+|.+|..-+.-|..+..+ .|++|.+.
T Consensus 386 -------~~f~gl~~LrkL~l~gN------qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 386 -------VAFNGLPSLRKLRLTGN------QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred -------hhhccchhhhheeecCc------eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 01124888999965554 3333344567789999999999998666566677666 78877664
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.7e-21 Score=186.78 Aligned_cols=348 Identities=22% Similarity=0.223 Sum_probs=240.8
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
.....+.+..+....+.+.+. ++..+.+|.+++|.. ..+|.+++.+..++.|+.+. +.+.++|+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~----nL~~l~vl~~~~n~l----~~lp~aig~l~~l~~l~vs~-----n~ls~lp~~i~ 111 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK----NLACLTVLNVHDNKL----SQLPAAIGELEALKSLNVSH-----NKLSELPEQIG 111 (565)
T ss_pred cchhhhhhccCchhhccHhhh----cccceeEEEeccchh----hhCCHHHHHHHHHHHhhccc-----chHhhccHHHh
Confidence 355566677777665555444 488899999999975 33677788888999999988 77788999999
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
.+..|+.|+.++|. +..+|++++.+..|+.|+..+|. +..+|.+++++.+|..|++.+|+ +...|+..-+++.|+.+
T Consensus 112 s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 112 SLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhc
Confidence 99999999999998 88899889999999999998877 88899999999999999999884 45556554446555543
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcc----cccCCCCchhHHHHHhhhcC-CC
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEE----QAGRRENEEDEAERLLEALG-PP 506 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~ 506 (683)
.-. ....+..|..++.+.+|+.|++..|.+...+.- .....-.+++.+..++.... .+
T Consensus 189 d~~-----------------~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 189 DCN-----------------SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred ccc-----------------hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 221 122344455666667777777766665432210 01111223445666776665 78
Q ss_pred CCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCC---------------eeE
Q 044935 507 PNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMES---------------VKR 571 (683)
Q Consensus 507 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~---------------l~~ 571 (683)
++|..|++++|+..+ + |..++.+.+|.+||+++|.+....+.+|++ .|+.|.+.|.+- +++
T Consensus 252 ~~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred ccceeeecccccccc--C-chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 999999999999998 7 888999999999999999988877789999 999999988431 011
Q ss_pred ecc-----cccC----CCCC-----CCCcccccccccccccccccc--------------------cccccc--------
Q 044935 572 VGN-----KFLG----VESD-----TDGSSVIAFPKLKRLAFHTME--------------------ELEEWD-------- 609 (683)
Q Consensus 572 ~~~-----~~~~----~~~~-----~~~~~~~~~~~L~~L~l~~~~--------------------~L~~~~-------- 609 (683)
... +... ..+. .....+....+.+.|+++.-. +++.+.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 110 0000 0000 000011122334444443211 111111
Q ss_pred ---------------cccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 610 ---------------FRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 610 ---------------~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
..+-.|..++.+++|..|++++|. +.++|..++.+..||.|+++.|.
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccc
Confidence 123345566789999999999985 78899999999999999999983
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=1e-17 Score=177.21 Aligned_cols=330 Identities=21% Similarity=0.200 Sum_probs=181.7
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
.-+|++|++++|..+ .+|..+..+.+|+.|+++. +.+.+.|.++.++.+|++|+|.+|. +..+|.+++.+
T Consensus 44 ~v~L~~l~lsnn~~~----~fp~~it~l~~L~~ln~s~-----n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~l 113 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS----SFPIQITLLSHLRQLNLSR-----NYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISEL 113 (1081)
T ss_pred eeeeEEeeccccccc----cCCchhhhHHHHhhcccch-----hhHhhCchhhhhhhcchhheeccch-hhcCchhHHhh
Confidence 333666666666542 2344455556666666665 5555666666666666666666655 66666666666
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCC-------------------ccccccccccCCCCC-CC------Cc
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT-------------------NSLRFLPVGIGELIS-LR------NL 431 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~-------------------~~~~~~p~~~~~l~~-L~------~l 431 (683)
++|++|++++|. ...+|..+..++.+..+..++| .....++.+++.++. |. ..
T Consensus 114 knl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEV 192 (1081)
T ss_pred hcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhh
Confidence 666666666655 4445555554444444444444 333333333333332 00 00
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC----CcccccCCCCchhHHHHHhhhcCCCC
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG----DEEQAGRRENEEDEAERLLEALGPPP 507 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (683)
..+..+.+|+.+.... ......-..-.+|+.|..+.|.+... .+......+.+.+....+|++++.+.
T Consensus 193 ~dls~~~~l~~l~c~r--------n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCER--------NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACA 264 (1081)
T ss_pred hhhhhccchhhhhhhh--------cccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcc
Confidence 0111111111110000 00000001123455555555554321 12233444455556677777888888
Q ss_pred CccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCC-----
Q 044935 508 NLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESD----- 582 (683)
Q Consensus 508 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~----- 582 (683)
+|+.+...+|.+.. + |..+....+|+.|.+..|......|.+.++.+|++|+|.... +...+..+......
T Consensus 265 nle~l~~n~N~l~~--l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 265 NLEALNANHNRLVA--L-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred cceEecccchhHHh--h-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHH
Confidence 88888888888766 6 666777888888888888766656668889999999997633 22222221111000
Q ss_pred ---------CCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc-CCCCCCCCceEE
Q 044935 583 ---------TDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD-RLLQKTTLQRLE 652 (683)
Q Consensus 583 ---------~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~ 652 (683)
........++.|+.|++.++. |++. .-..+..+++|+.|+|++|. +..+|. .+.++..|+.|+
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~-----c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNH-LTDS-----CFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELN 413 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCc-cccc-----chhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHh
Confidence 001112245667777555442 4433 33346678999999999987 566666 567788999999
Q ss_pred EeCCc
Q 044935 653 IYGCP 657 (683)
Q Consensus 653 l~~c~ 657 (683)
+|||.
T Consensus 414 LSGNk 418 (1081)
T KOG0618|consen 414 LSGNK 418 (1081)
T ss_pred cccch
Confidence 99985
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=4.5e-15 Score=162.41 Aligned_cols=260 Identities=19% Similarity=0.169 Sum_probs=141.0
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLL 354 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~ 354 (683)
..+.+..+.+..+|..+ .++|+.|.+.+|.+.. +|. ..++|++|++++ |.+..+|.. .+
T Consensus 204 ~~LdLs~~~LtsLP~~l------~~~L~~L~L~~N~Lt~----LP~---lp~~Lk~LdLs~-----N~LtsLP~l---p~ 262 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL------PAHITTLVIPDNNLTS----LPA---LPPELRTLEVSG-----NQLTSLPVL---PP 262 (788)
T ss_pred cEEEcCCCCCCcCCcch------hcCCCEEEccCCcCCC----CCC---CCCCCcEEEecC-----CccCcccCc---cc
Confidence 45566666666666654 3467778888777532 332 246778888877 455566642 35
Q ss_pred CCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCcccc
Q 044935 355 HLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSL 434 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l 434 (683)
+|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. +++|+.|++++| .+..+|.....+..|
T Consensus 263 sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~~L~~L------ 327 (788)
T PRK15387 263 GLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKL------ 327 (788)
T ss_pred ccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCccccccc------
Confidence 67778888777 6677652 2467777888776 6667653 467788888777 344454322221111
Q ss_pred ccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEE
Q 044935 435 KKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRI 514 (683)
Q Consensus 435 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 514 (683)
. +....+. . .+. ...+|+.|++++|.+.. +|. .+++|+.|++
T Consensus 328 ---~-Ls~N~L~---~-------LP~---lp~~Lq~LdLS~N~Ls~------------------LP~---lp~~L~~L~L 369 (788)
T PRK15387 328 ---W-AYNNQLT---S-------LPT---LPSGLQELSVSDNQLAS------------------LPT---LPSELYKLWA 369 (788)
T ss_pred ---c-cccCccc---c-------ccc---cccccceEecCCCccCC------------------CCC---CCcccceehh
Confidence 0 0000000 0 000 01356777777766432 111 1346666777
Q ss_pred eeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCccccccccc
Q 044935 515 HEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKL 594 (683)
Q Consensus 515 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 594 (683)
++|.+.. + |.. ..+|+.|++++|.+.. +|.. .++|+.|+++++. +..++. .+.+|
T Consensus 370 s~N~L~~--L-P~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~--------LssIP~--------l~~~L 424 (788)
T PRK15387 370 YNNRLTS--L-PAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNR--------LTSLPM--------LPSGL 424 (788)
T ss_pred hcccccc--C-ccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCc--------CCCCCc--------chhhh
Confidence 7766655 5 322 3467777777775443 4432 2466777775432 222111 12345
Q ss_pred ccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc
Q 044935 595 KRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD 640 (683)
Q Consensus 595 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 640 (683)
+.|++++ |.++ .+|..+..+++|+.|+|++|+..+..|.
T Consensus 425 ~~L~Ls~------NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 425 LSLSVYR------NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhcc------Cccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 5554333 3332 3555666677777777777765544433
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-16 Score=169.14 Aligned_cols=347 Identities=20% Similarity=0.181 Sum_probs=218.2
Q ss_pred EEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCC
Q 044935 277 LMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHL 356 (683)
Q Consensus 277 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L 356 (683)
+..+....+.+|..++. ...+..|.+..|.+-. . +-++..+..+|++|++++ +.+..+|..+..+.+|
T Consensus 3 vd~s~~~l~~ip~~i~~----~~~~~~ln~~~N~~l~--~-pl~~~~~~v~L~~l~lsn-----n~~~~fp~~it~l~~L 70 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILN----NEALQILNLRRNSLLS--R-PLEFVEKRVKLKSLDLSN-----NQISSFPIQITLLSHL 70 (1081)
T ss_pred cccccccCcccchhhcc----HHHHHhhhcccccccc--C-chHHhhheeeeEEeeccc-----cccccCCchhhhHHHH
Confidence 33455566667777765 4558888888886421 1 233455556699999999 7788999999999999
Q ss_pred cEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCc-----
Q 044935 357 KYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL----- 431 (683)
Q Consensus 357 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l----- 431 (683)
+.|+++.|. +..+|.+++++.+|++|.|.+|. +..+|.++..+++|++|++++|.+ ..+|.-+..++.+..+
T Consensus 71 ~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 71 RQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhcccchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcc
Confidence 999999998 99999999999999999999776 999999999999999999999954 5566554443322211
Q ss_pred ---cccccCc----cCCCee--------EcCCCCCCC--hhHhHHhccccCCCCCeEEEEeecCCCCC--cccccCCCCc
Q 044935 432 ---GSLKKLN----LLRECW--------ICGRGGVSD--AGEARRAELEQKKNLLKLGLHFCHSRDGD--EEQAGRRENE 492 (683)
Q Consensus 432 ---~~l~~L~----~L~~l~--------i~~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~ 492 (683)
..++... .|+... +..+...-. ........+..+.+|+.+....|.+..-. ......+..+
T Consensus 148 ~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~ 227 (1081)
T KOG0618|consen 148 EKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYAD 227 (1081)
T ss_pred hhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeec
Confidence 0011000 011000 000000000 00001233444555555555544432210 0011111111
Q ss_pred hhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEe
Q 044935 493 EDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRV 572 (683)
Q Consensus 493 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~ 572 (683)
.+.+. .......+.+|++++++.+.... + |+|+..+.+|+.+...+|.+...+..+....+|+.|.+..|. ++++
T Consensus 228 ~n~l~-~~~~~p~p~nl~~~dis~n~l~~--l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yi 302 (1081)
T KOG0618|consen 228 HNPLT-TLDVHPVPLNLQYLDISHNNLSN--L-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYI 302 (1081)
T ss_pred cCcce-eeccccccccceeeecchhhhhc--c-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhC
Confidence 22222 12223345789999999999888 8 699999999999999999774433337778888888885543 4444
Q ss_pred cccccCCCCCCCCccccccccccccccccccccccc--------------------ccccccccccccCCcccEEeecCC
Q 044935 573 GNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEW--------------------DFRTAIKGEIIIMPRLSSLSIDDC 632 (683)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~--------------------~~~~~~~~~~~~l~~L~~L~l~~c 632 (683)
+.... .+.+|++|++..+. |.++ .+....-..-..++.|+.|.+.+|
T Consensus 303 p~~le------------~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 303 PPFLE------------GLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred CCccc------------ccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 33322 36667777655432 2211 111111112235778999999999
Q ss_pred CCCCcCCcCCCCCCCCceEEEeCC
Q 044935 633 PKLKALPDRLLQKTTLQRLEIYGC 656 (683)
Q Consensus 633 ~~l~~lp~~l~~l~~L~~L~l~~c 656 (683)
......-..+.+...|+.|+++.|
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred cccccchhhhccccceeeeeeccc
Confidence 876665556777999999999999
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=2e-14 Score=158.54 Aligned_cols=121 Identities=24% Similarity=0.356 Sum_probs=84.1
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccC
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKN 352 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~ 352 (683)
....+.+...++..+|..+ .+.|+.|++++|.+. .+|..+. .+|+.|++++ +.+..+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I------p~~L~~L~Ls~N~Lt----sLP~~l~--~nL~~L~Ls~-----N~LtsLP~~l~- 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI------PEQITTLILDNNELK----SLPENLQ--GNIKTLYANS-----NQLTSIPATLP- 240 (754)
T ss_pred CceEEEeCCCCcCcCCccc------ccCCcEEEecCCCCC----cCChhhc--cCCCEEECCC-----CccccCChhhh-
Confidence 4566777777777777654 356888888888763 2444332 4788888888 55566776543
Q ss_pred CCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccc
Q 044935 353 LLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLP 419 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 419 (683)
.+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. ++|++|++++|. +..+|
T Consensus 241 -~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP 299 (754)
T PRK15370 241 -DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLP 299 (754)
T ss_pred -ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCc
Confidence 468888888887 778887664 478888888775 777777654 478888888873 34444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=3.1e-14 Score=156.98 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=72.5
Q ss_pred CCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhccc
Q 044935 299 RRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELY 378 (683)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 378 (683)
.+...|+++++.+.. +|..+. ++|+.|+|++ +.+..+|..+. .+|++|++++|. +..+|..+. .
T Consensus 178 ~~~~~L~L~~~~Lts----LP~~Ip--~~L~~L~Ls~-----N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~ 241 (754)
T PRK15370 178 NNKTELRLKILGLTT----IPACIP--EQITTLILDN-----NELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--D 241 (754)
T ss_pred cCceEEEeCCCCcCc----CCcccc--cCCcEEEecC-----CCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--c
Confidence 346678888877643 333222 4688888888 56667787654 588899998887 788887554 4
Q ss_pred CCcEEeccCccchhhcccccccccccceEecCCCccccccccc
Q 044935 379 NLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVG 421 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 421 (683)
+|+.|+|++|. +..+|..+. ++|+.|++++| .+..+|..
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~ 280 (754)
T PRK15370 242 TIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPEN 280 (754)
T ss_pred cccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccc
Confidence 78889998887 677887664 47888888877 44556653
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.6e-13 Score=148.73 Aligned_cols=234 Identities=23% Similarity=0.239 Sum_probs=153.0
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+.+..+.+..+|.. .++|++|++++|.+.. +|. ..++|+.|++++ +.+..+|..
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l-------p~~Lk~LdLs~N~Lts----LP~---lp~sL~~L~Ls~-----N~L~~Lp~l-- 280 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL-------PPELRTLEVSGNQLTS----LPV---LPPGLLELSIFS-----NPLTHLPAL-- 280 (788)
T ss_pred cCCCEEEccCCcCCCCCCC-------CCCCcEEEecCCccCc----ccC---cccccceeeccC-----Cchhhhhhc--
Confidence 4688999999988887752 6789999999998743 343 236789999998 556667753
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
..+|+.|++++|. +..+|.. +++|++|++++|. +..+|... .+|+.|++++|. +..+|....+
T Consensus 281 -p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~lp~~------- 343 (788)
T PRK15387 281 -PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQ-LTSLPTLPSG------- 343 (788)
T ss_pred -hhhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccCc-cccccccccc-------
Confidence 3568889999998 8888863 4789999999886 77777533 357788888873 4555542211
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccE
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKE 511 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 511 (683)
|+.+.+.+.. ... .+. ...+|+.|++++|.+.. +|. .+++|+.
T Consensus 344 --------Lq~LdLS~N~-Ls~----LP~---lp~~L~~L~Ls~N~L~~------------------LP~---l~~~L~~ 386 (788)
T PRK15387 344 --------LQELSVSDNQ-LAS----LPT---LPSELYKLWAYNNRLTS------------------LPA---LPSGLKE 386 (788)
T ss_pred --------cceEecCCCc-cCC----CCC---CCcccceehhhcccccc------------------Ccc---cccccce
Confidence 2222221100 000 111 12467788888876432 222 1357999
Q ss_pred EEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccc
Q 044935 512 LRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAF 591 (683)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 591 (683)
|++++|.+.. + |.. .++|+.|++++|.+.. +|.+ ..+|+.|+++++. ++.++.. ...+
T Consensus 387 LdLs~N~Lt~--L-P~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~Nq-Lt~LP~s------------l~~L 444 (788)
T PRK15387 387 LIVSGNRLTS--L-PVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQ-LTRLPES------------LIHL 444 (788)
T ss_pred EEecCCcccC--C-CCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCc-ccccChH------------Hhhc
Confidence 9999998876 6 332 4689999999997654 5542 3478888886533 3333322 2357
Q ss_pred ccccccccccc
Q 044935 592 PKLKRLAFHTM 602 (683)
Q Consensus 592 ~~L~~L~l~~~ 602 (683)
++|+.|+++++
T Consensus 445 ~~L~~LdLs~N 455 (788)
T PRK15387 445 SSETTVNLEGN 455 (788)
T ss_pred cCCCeEECCCC
Confidence 88888865554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=9.7e-15 Score=149.68 Aligned_cols=91 Identities=22% Similarity=0.183 Sum_probs=43.4
Q ss_pred hhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCcc-------ccchHHhcccCCcEEeccCccchhh
Q 044935 321 LFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIK-------RLPEVLCELYNLERLDVRFCVNLRE 393 (683)
Q Consensus 321 ~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-------~lp~~i~~L~~L~~L~L~~~~~l~~ 393 (683)
.+..+.+|++|+++++.++......++..+...+.|++|+++++. +. .++..+.++++|++|++++|.....
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 344445556666655444333333444445555555666655554 22 1233444555666666655553222
Q ss_pred cccccccccc---cceEecCCC
Q 044935 394 LLQGIGKLRK---LMYLDNEGT 412 (683)
Q Consensus 394 lp~~i~~l~~---L~~L~l~~~ 412 (683)
.+..+..+.+ |++|++++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC
Confidence 3333333332 555555555
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.1e-15 Score=130.17 Aligned_cols=163 Identities=28% Similarity=0.284 Sum_probs=105.5
Q ss_pred CCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccc
Q 044935 324 KLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRK 403 (683)
Q Consensus 324 ~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 403 (683)
++.+.+.|.|++ +.+..+|..|..+.+|+.|++++|+ ++++|.+++.+++|++|++.-|. +..+|.+++.++.
T Consensus 31 ~~s~ITrLtLSH-----NKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSH-----NKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhccc-----CceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCch
Confidence 445556666666 5556677777777777777777776 77777777777777777776655 6667777777777
Q ss_pred cceEecCCCcccc-ccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCC
Q 044935 404 LMYLDNEGTNSLR-FLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGD 482 (683)
Q Consensus 404 L~~L~l~~~~~~~-~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 482 (683)
|+.||++.|+..+ .+|.. +..++.|+.|.++.|.
T Consensus 104 levldltynnl~e~~lpgn----------------------------------------ff~m~tlralyl~dnd----- 138 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGN----------------------------------------FFYMTTLRALYLGDND----- 138 (264)
T ss_pred hhhhhccccccccccCCcc----------------------------------------hhHHHHHHHHHhcCCC-----
Confidence 7777776653211 12221 2233344445555443
Q ss_pred cccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCC
Q 044935 483 EEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGK 554 (683)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~ 554 (683)
..-+|..++.+++|+.|.+.+|...+ + |..++.+..|++|.+.+|......|+++.
T Consensus 139 -------------fe~lp~dvg~lt~lqil~lrdndll~--l-pkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 139 -------------FEILPPDVGKLTNLQILSLRDNDLLS--L-PKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred -------------cccCChhhhhhcceeEEeeccCchhh--C-cHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 23445666777777888888777777 6 77788888888888888876665555544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=1.4e-14 Score=139.56 Aligned_cols=262 Identities=19% Similarity=0.183 Sum_probs=159.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i 350 (683)
.....+.+..|.+..+|+..|+ .+++||.|+++.|.++ .+-|++|.+++.|..|-+.++ +.|+++|+ .|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~---~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~----NkI~~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFK---TLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGN----NKITDLPKGAF 136 (498)
T ss_pred CcceEEEeccCCcccCChhhcc---chhhhceecccccchh---hcChHhhhhhHhhhHHHhhcC----CchhhhhhhHh
Confidence 5788888999999999887665 5888999999999854 567889999999888777663 77888885 48
Q ss_pred cCCCCCcEEeecCCCCccc-cchHHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCccc------------c
Q 044935 351 KNLLHLKYLSLFGESEIKR-LPEVLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSL------------R 416 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~------------~ 416 (683)
++|..|+.|.+.-|. +.- ....+..|++|..|.+.+|. +..++. .+..+.+++++.+..|..+ .
T Consensus 137 ~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 889999999998888 554 44668889999999999887 777776 6788888888887766421 1
Q ss_pred ccccccCCCCCCC----------CccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccc
Q 044935 417 FLPVGIGELISLR----------NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQA 486 (683)
Q Consensus 417 ~~p~~~~~l~~L~----------~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 486 (683)
..|..++..+... .+..=+.+..++.+.-.-..............+..+++|++|++++|.++...
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~---- 290 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE---- 290 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh----
Confidence 2222222222211 00000000001110000000111111223345788999999999999864422
Q ss_pred cCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEec
Q 044935 487 GRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHIL 564 (683)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~ 564 (683)
..++.....++.|.|..|++.. +....|..+++|+.|+|.+|++....|. +..+.+|.+|.+-
T Consensus 291 -------------~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 291 -------------DGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred -------------hhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 2234444455555555554443 2233344555555555555554444333 4444455555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=1.7e-14 Score=122.84 Aligned_cols=126 Identities=22% Similarity=0.289 Sum_probs=53.4
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccC
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKN 352 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~ 352 (683)
.+.++.++.+++..+|+.+.+ +.+|++|.+++|++ ..+|..++.++.||.|++.- +.+..+|..|+.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~----l~nlevln~~nnqi----e~lp~~issl~klr~lnvgm-----nrl~~lprgfgs 100 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAE----LKNLEVLNLSNNQI----EELPTSISSLPKLRILNVGM-----NRLNILPRGFGS 100 (264)
T ss_pred hhhhhhcccCceeecCCcHHH----hhhhhhhhcccchh----hhcChhhhhchhhhheecch-----hhhhcCccccCC
Confidence 344444444444444444433 44444444444443 22333344444444444443 333344444444
Q ss_pred CCCCcEEeecCCCCcc-ccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 353 LLHLKYLSLFGESEIK-RLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
++.|+.||+.+|..-+ .+|..+..+..|+-|.|++|. .+.+|..++++++|+.|.+..|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC
Confidence 4444444444443111 234334444444444444443 3444444444444444444443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=3.1e-13 Score=138.48 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=80.5
Q ss_pred hccCCccEEEEeCCCCccc-cccchhhhcCCCceeEEEecccCCc--ccCcccccccccCCCCCcEEeecCCCCccccch
Q 044935 296 KRMRRLRSLSVEGGEYSWS-SKVLPQLFDKLTCLRAITLETYGWD--YNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE 372 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~--~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~ 372 (683)
..+..|+.|.+.++.+... ...++..+...+.|+.|+++++.+. ...+..++..+..+++|++|++++|......+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3477788899888875321 1224555677788889988886554 233344566677788999999998884445666
Q ss_pred HHhcccC---CcEEeccCccch----hhcccccccc-cccceEecCCCcc
Q 044935 373 VLCELYN---LERLDVRFCVNL----RELLQGIGKL-RKLMYLDNEGTNS 414 (683)
Q Consensus 373 ~i~~L~~---L~~L~L~~~~~l----~~lp~~i~~l-~~L~~L~l~~~~~ 414 (683)
.+..+.. |++|++++|... ..+...+..+ ++|+.|++++|..
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 6666665 999999888632 1233445566 7889999888853
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-12 Score=144.70 Aligned_cols=314 Identities=26% Similarity=0.333 Sum_probs=182.3
Q ss_pred CceEEEEEEecC--CCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc
Q 044935 272 KKVLHLMLTIDE--GTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN 349 (683)
Q Consensus 272 ~~~~~l~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~ 349 (683)
++++.+.+..+. ...++..+ |..++.|++|++++|. ....+|+.++.+-+||+|+|++ +.+.++|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~f---f~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~-----t~I~~LP~~ 613 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEF---FRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSD-----TGISHLPSG 613 (889)
T ss_pred CccceEEEeecchhhhhcCHHH---HhhCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccC-----CCccccchH
Confidence 468888888886 34344433 4469999999999975 3355899999999999999999 888999999
Q ss_pred ccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCcc-c-hhhcccccccccccceEecCCCccccccccccCCCCC
Q 044935 350 IKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCV-N-LRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELIS 427 (683)
Q Consensus 350 i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~-~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 427 (683)
+++|..|.+|++..+.....+|.....|.+|++|.+.... . -...-..+.+|++|+.+....... .+-..+..++.
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~ 691 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTR 691 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHH
Confidence 9999999999999988777778767779999999997643 1 111122334455555554433211 11111122222
Q ss_pred CCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCC
Q 044935 428 LRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPP 507 (683)
Q Consensus 428 L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (683)
|..+. ..+.+.. .......+.+..+.+|+.|.+..|...+......... .. .. .++
T Consensus 692 L~~~~--------~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~-----~~---~~---~f~ 747 (889)
T KOG4658|consen 692 LRSLL--------QSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL-----IV---LL---CFP 747 (889)
T ss_pred HHHHh--------Hhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhccccccc-----ch---hh---hHH
Confidence 21110 0011110 1223334567788999999999997432111000000 00 00 233
Q ss_pred CccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEec--CCCCeeEecccccCCCCCCC
Q 044935 508 NLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHIL--GMESVKRVGNKFLGVESDTD 584 (683)
Q Consensus 508 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~--~~~~l~~~~~~~~~~~~~~~ 584 (683)
++..+.+.++.... . +.|....++|+.|++..|...+.+.. ...+..++.+.+. .+..++...
T Consensus 748 ~l~~~~~~~~~~~r--~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~----------- 813 (889)
T KOG4658|consen 748 NLSKVSILNCHMLR--D-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC----------- 813 (889)
T ss_pred HHHHHHhhcccccc--c-cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeee-----------
Confidence 55555555665555 3 56667788899999988886665443 4444444442221 111111000
Q ss_pred CcccccccccccccccccccccccccccccccccccCCcccEEeecCC-CCCCcCCcC
Q 044935 585 GSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDC-PKLKALPDR 641 (683)
Q Consensus 585 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c-~~l~~lp~~ 641 (683)
..+.||++..+.+.... |..+.... .| ....+|.+..+.+.+| ..+...|..
T Consensus 814 --~l~~l~~i~~~~l~~~~-l~~~~ve~-~p-~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 814 --SLGGLPQLYWLPLSFLK-LEELIVEE-CP-KLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred --cCCCCceeEecccCccc-hhheehhc-Cc-ccccCccccccceeccccceeecCCc
Confidence 01133333333333322 33333211 11 1235889999999997 666667765
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=1.7e-13 Score=132.14 Aligned_cols=296 Identities=21% Similarity=0.250 Sum_probs=166.6
Q ss_pred ecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCCCCcEE
Q 044935 281 IDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLLHLKYL 359 (683)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~~L~~L 359 (683)
.....++|..+ -+....+.+..|.++ .+.|.+|+.+++||.|+|+. |.|+.+ |..|.++..|-.|
T Consensus 55 ~~GL~eVP~~L------P~~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~-----N~Is~I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 55 GKGLTEVPANL------PPETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSK-----NNISFIAPDAFKGLASLLSL 120 (498)
T ss_pred CCCcccCcccC------CCcceEEEeccCCcc---cCChhhccchhhhceecccc-----cchhhcChHhhhhhHhhhHH
Confidence 34556667665 344567888888854 55678899999999999999 555554 6789999998888
Q ss_pred eecCCCCccccch-HHhcccCCcEEeccCccchhhcccccccccccceEecCCCcccccccc-ccCCCCCCCCccccccC
Q 044935 360 SLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPV-GIGELISLRNLGSLKKL 437 (683)
Q Consensus 360 ~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~l~~l~~L 437 (683)
-+.++..|+.+|+ .+.+|..|+.|.+.-|..-......+..|++|..|.+.+| .+..++. .+..+..++.+
T Consensus 121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tl------ 193 (498)
T KOG4237|consen 121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTL------ 193 (498)
T ss_pred HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchH------
Confidence 8877555999995 5889999999999888733344466789999999999888 4455655 44444444322
Q ss_pred ccCCC--eeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEE--E
Q 044935 438 NLLRE--CWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKEL--R 513 (683)
Q Consensus 438 ~~L~~--l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L--~ 513 (683)
..-+. ....+...........+..+++........+........ ....+... ++.+ .
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~-------------~a~kf~c~------~esl~s~ 254 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE-------------DARKFLCS------LESLPSR 254 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc-------------chhhhhhh------HHhHHHh
Confidence 11000 000000011111111122222222221111111111000 01111111 1111 1
Q ss_pred EeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCccccccc
Q 044935 514 IHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFP 592 (683)
Q Consensus 514 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (683)
+.+........|...|+.+++|++|++++|++.+.-+. +.++..+++|.|.+.. ++.+.+.+.. ++.
T Consensus 255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~-----------~ls 322 (498)
T KOG4237|consen 255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQ-----------GLS 322 (498)
T ss_pred hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhh-----------ccc
Confidence 11222122224566778888888888888876654444 7777777887774422 2222222111 344
Q ss_pred ccccccccccccccccccccccccccccCCcccEEeecCCCC
Q 044935 593 KLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPK 634 (683)
Q Consensus 593 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 634 (683)
.|+.| +|.++.++...|..|..+.+|..|.+-.||.
T Consensus 323 ~L~tL------~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 323 GLKTL------SLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cceee------eecCCeeEEEecccccccceeeeeehccCcc
Confidence 55555 3445555555666666666666666666554
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.03 E-value=2.3e-11 Score=118.66 Aligned_cols=167 Identities=19% Similarity=0.246 Sum_probs=112.7
Q ss_pred HhhhcCCCCCccEEEEeeecCCCCccCcchH-hhccccceEeecCCCCCCCCCC---CCCCCCcceEEecCCCCeeEecc
Q 044935 499 LLEALGPPPNLKELRIHEYRGRRNVVPINWI-MSLTNLRDLYLSYCRNCEHLPP---LGKLPSLEDLHILGMESVKRVGN 574 (683)
Q Consensus 499 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~L~~~~~l~~~~~ 574 (683)
+...-..+..|+.|..+++....+.. ...+ ...++|+.|.++.|+...+... -.+.+.|+.+++.+|......
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-- 362 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-- 362 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--
Confidence 44455567788999988887655322 2222 3678999999999985544322 346888999999887644222
Q ss_pred cccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCc-CCcCCCCCCCCceEEE
Q 044935 575 KFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKA-LPDRLLQKTTLQRLEI 653 (683)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l 653 (683)
.+.. ....+|.|+.|.+++|...++-.+. .+...-.++..|+.+.+++|+.+++ .-+.+..+++|+.+++
T Consensus 363 tL~s--------ls~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 363 TLAS--------LSRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred hHhh--------hccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 2222 2237999999999998876665331 1222334678999999999998654 3335667899999999
Q ss_pred eCCcchHHHhhcccCCCCCccCCCCcceeC
Q 044935 654 YGCPILEERCRKETGEDWPKIRHIPDIEIE 683 (683)
Q Consensus 654 ~~c~~l~~~~~~~~~~~~~~i~~i~~v~~~ 683 (683)
.+|..+....-.. ...|+|+++++
T Consensus 434 ~~~q~vtk~~i~~------~~~~lp~i~v~ 457 (483)
T KOG4341|consen 434 IDCQDVTKEAISR------FATHLPNIKVH 457 (483)
T ss_pred echhhhhhhhhHH------HHhhCccceeh
Confidence 9998766543332 25677777654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.7e-11 Score=124.03 Aligned_cols=192 Identities=21% Similarity=0.264 Sum_probs=111.5
Q ss_pred eEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCC
Q 044935 274 VLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNL 353 (683)
Q Consensus 274 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l 353 (683)
.....++.+....+|..+.. |..|..+.+..|.+ ..+|..+.++..|.+|+|+. +.+..+|..++.|
T Consensus 77 t~~aDlsrNR~~elp~~~~~----f~~Le~liLy~n~~----r~ip~~i~~L~~lt~l~ls~-----NqlS~lp~~lC~l 143 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACA----FVSLESLILYHNCI----RTIPEAICNLEALTFLDLSS-----NQLSHLPDGLCDL 143 (722)
T ss_pred hhhhhccccccccCchHHHH----HHHHHHHHHHhccc----eecchhhhhhhHHHHhhhcc-----chhhcCChhhhcC
Confidence 34444555555555555444 55555555555543 33455555666666666665 4455566555544
Q ss_pred CCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccc
Q 044935 354 LHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGS 433 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~ 433 (683)
+ |+.|-+++|+ ++.+|+.++.+..|..||.+.|. +..+|+.++.+.+|+.|.+..|+ +..+|.++..
T Consensus 144 p-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~--------- 210 (722)
T KOG0532|consen 144 P-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCS--------- 210 (722)
T ss_pred c-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhC---------
Confidence 3 5666666655 66666666655666666666555 55566666666666666655552 2334433221
Q ss_pred cccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEE
Q 044935 434 LKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELR 513 (683)
Q Consensus 434 l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 513 (683)
-.|.+||++.|+ +..+|-.+..++.|++|.
T Consensus 211 --------------------------------LpLi~lDfScNk------------------is~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 211 --------------------------------LPLIRLDFSCNK------------------ISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred --------------------------------CceeeeecccCc------------------eeecchhhhhhhhheeee
Confidence 145677777775 345677777888888888
Q ss_pred EeeecCCCCccCcchHh---hccccceEeecCCC
Q 044935 514 IHEYRGRRNVVPINWIM---SLTNLRDLYLSYCR 544 (683)
Q Consensus 514 l~~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~ 544 (683)
|.+|.... ||..++ ..+=.++|+..-|.
T Consensus 241 LenNPLqS---PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 241 LENNPLQS---PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eccCCCCC---ChHHHHhccceeeeeeecchhcc
Confidence 88887766 244444 34456677777773
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2e-11 Score=123.47 Aligned_cols=212 Identities=25% Similarity=0.253 Sum_probs=154.7
Q ss_pred EEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCC
Q 044935 277 LMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHL 356 (683)
Q Consensus 277 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L 356 (683)
+.+.+.....+|..... ..+..-...+++.|.+ ..+|..+..+..|..|.|.. +.+..+|..++++..|
T Consensus 55 l~Ls~rrlk~fpr~a~~--~~ltdt~~aDlsrNR~----~elp~~~~~f~~Le~liLy~-----n~~r~ip~~i~~L~~l 123 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAAS--YDLTDTVFADLSRNRF----SELPEEACAFVSLESLILYH-----NCIRTIPEAICNLEAL 123 (722)
T ss_pred cccccchhhcCCCcccc--ccccchhhhhcccccc----ccCchHHHHHHHHHHHHHHh-----ccceecchhhhhhhHH
Confidence 33444444444433332 2255566778888876 34677788888899999888 7778899999999999
Q ss_pred cEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCcccccc
Q 044935 357 KYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKK 436 (683)
Q Consensus 357 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~ 436 (683)
.||+|+.|. +..+|..++.|+ |+.|-+++|+ ++.+|..++.+..|.+||.+.| .+..+|..++.
T Consensus 124 t~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~------------ 187 (722)
T KOG0532|consen 124 TFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGY------------ 187 (722)
T ss_pred HHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhh------------
Confidence 999999998 899998888765 8889899776 8999999998899999999888 34555554443
Q ss_pred CccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEee
Q 044935 437 LNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHE 516 (683)
Q Consensus 437 L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 516 (683)
+.+|+.|.+..|. +..+|+.+. .-.|..|++++
T Consensus 188 ----------------------------l~slr~l~vrRn~------------------l~~lp~El~-~LpLi~lDfSc 220 (722)
T KOG0532|consen 188 ----------------------------LTSLRDLNVRRNH------------------LEDLPEELC-SLPLIRLDFSC 220 (722)
T ss_pred ----------------------------HHHHHHHHHhhhh------------------hhhCCHHHh-CCceeeeeccc
Confidence 3444555555554 445566666 34688999999
Q ss_pred ecCCCCccCcchHhhccccceEeecCCCCCCCCCC----CCCCCCcceEEecCC
Q 044935 517 YRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP----LGKLPSLEDLHILGM 566 (683)
Q Consensus 517 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~L~~~ 566 (683)
|++.. + |-.|..+..|++|.|.+|++.. .|. -|...-.++|+...|
T Consensus 221 Nkis~--i-Pv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 221 NKISY--L-PVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Cceee--c-chhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 99888 7 8889999999999999886543 443 445555677777666
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.2e-09 Score=107.61 Aligned_cols=137 Identities=20% Similarity=0.139 Sum_probs=94.7
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+++.++.....+.. ...+.|++++.|+++.|-+... ..+......+++|+.|+|+.|.+. +...+.- -.
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~--~~ 194 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLS-NFISSNT--TL 194 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhccccccccc-CCccccc--hh
Confidence 5677788887776654432 2345599999999999976433 224556789999999999996654 2222222 23
Q ss_pred CCCCCcEEeecCCCCcc--ccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccc
Q 044935 352 NLLHLKYLSLFGESEIK--RLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSL 415 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 415 (683)
.+.+|+.|.|+.|. +. .+-.-...+++|+.|+|.+|..+...-....-+..|+.|++++|..+
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 68899999999998 54 33344567899999999988533322233345678999999998543
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.82 E-value=3e-10 Score=111.05 Aligned_cols=270 Identities=20% Similarity=0.225 Sum_probs=175.6
Q ss_pred ceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccc--hHHhcccCCcEEeccCccchhhcc-c-cccccc
Q 044935 327 CLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLP--EVLCELYNLERLDVRFCVNLRELL-Q-GIGKLR 402 (683)
Q Consensus 327 ~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp-~-~i~~l~ 402 (683)
.|+.|.++|+.- .....+-..-.++++++.|.+.+|.++++-. ..-..+++|++|++..|..++... . -...++
T Consensus 139 ~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 578888888632 2333344445678888889999998666422 223468899999999887776532 1 235688
Q ss_pred ccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCC
Q 044935 403 KLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGD 482 (683)
Q Consensus 403 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 482 (683)
+|.+|+++.|..+.. .++ .....++..++.+...+|.-
T Consensus 217 kL~~lNlSwc~qi~~--~gv------------------------------------~~~~rG~~~l~~~~~kGC~e---- 254 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG--NGV------------------------------------QALQRGCKELEKLSLKGCLE---- 254 (483)
T ss_pred hHHHhhhccCchhhc--Ccc------------------------------------hHHhccchhhhhhhhccccc----
Confidence 999999988854332 110 11233444555665556641
Q ss_pred cccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC---CCCCCCcc
Q 044935 483 EEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP---LGKLPSLE 559 (683)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---l~~l~~L~ 559 (683)
.....+...-+.+.-+.++++..|...++.-.-..-..+..|+.|..++|...++.+- -.+.++|+
T Consensus 255 -----------~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 255 -----------LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred -----------ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 1233344444455566677776776555321011123688999999999987555433 45689999
Q ss_pred eEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcC-
Q 044935 560 DLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKAL- 638 (683)
Q Consensus 560 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l- 638 (683)
.|.+.+|..+...+ ++... .+++.|+.+++..|.....-.+... -.++|.|++|.+++|...++-
T Consensus 324 ~l~l~~c~~fsd~~--ft~l~--------rn~~~Le~l~~e~~~~~~d~tL~sl----s~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 324 VLELSGCQQFSDRG--FTMLG--------RNCPHLERLDLEECGLITDGTLASL----SRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred EEeccccchhhhhh--hhhhh--------cCChhhhhhcccccceehhhhHhhh----ccCCchhccCChhhhhhhhhhh
Confidence 99999998764433 33222 2689999999888865544333221 236999999999999876654
Q ss_pred ----CcCCCCCCCCceEEEeCCcchHHHhhc
Q 044935 639 ----PDRLLQKTTLQRLEIYGCPILEERCRK 665 (683)
Q Consensus 639 ----p~~l~~l~~L~~L~l~~c~~l~~~~~~ 665 (683)
...-.....|+.+.+++||.+++...+
T Consensus 390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 390 IRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhhhhhccccccccceeeecCCCCchHHHHH
Confidence 334456789999999999998887644
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.3e-09 Score=107.18 Aligned_cols=245 Identities=19% Similarity=0.146 Sum_probs=151.5
Q ss_pred cccccccccCCCCCcEEeecCCCCccccch--HHhcccCCcEEeccCccc--hhhcccccccccccceEecCCCcccccc
Q 044935 343 IKEIPTNIKNLLHLKYLSLFGESEIKRLPE--VLCELYNLERLDVRFCVN--LRELLQGIGKLRKLMYLDNEGTNSLRFL 418 (683)
Q Consensus 343 ~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~--l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 418 (683)
+.++...=.++.+|+...|.++. +...+. ....|++++.|||+.|-. ...+-.-...|++|+.|+++.|.....
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~- 187 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF- 187 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-
Confidence 34444445678888888888887 777763 567888999999988741 223334457888999999988732110
Q ss_pred ccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHH
Q 044935 419 PVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAER 498 (683)
Q Consensus 419 p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (683)
.+.. .-..+++|+.|.++.|.++ ...
T Consensus 188 ---~~s~-----------------------------------~~~~l~~lK~L~l~~CGls----------------~k~ 213 (505)
T KOG3207|consen 188 ---ISSN-----------------------------------TTLLLSHLKQLVLNSCGLS----------------WKD 213 (505)
T ss_pred ---cccc-----------------------------------chhhhhhhheEEeccCCCC----------------HHH
Confidence 1100 0013568889999999854 244
Q ss_pred HhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCC--CCCCCCCCcceEEecCCCCeeEecccc
Q 044935 499 LLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHL--PPLGKLPSLEDLHILGMESVKRVGNKF 576 (683)
Q Consensus 499 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~L~~~~~l~~~~~~~ 576 (683)
+...+..+|+|+.|.+.+|.... .......-++.|+.|+|++|.+...- +..+.+|.|..|++..|..- .+
T Consensus 214 V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~-si---- 286 (505)
T KOG3207|consen 214 VQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA-SI---- 286 (505)
T ss_pred HHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc-hh----
Confidence 55566678899999999985333 11334457888999999999876543 55899999999999765421 11
Q ss_pred cCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc----CCCCCCCCceEE
Q 044935 577 LGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD----RLLQKTTLQRLE 652 (683)
Q Consensus 577 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~ 652 (683)
...+.........||+|++|.+..++ ...|..- ..+..+++|+.|.+..|+..+.--. -+...++|..|+
T Consensus 287 -~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl----~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN 360 (505)
T KOG3207|consen 287 -AEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL----NHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLN 360 (505)
T ss_pred -cCCCccchhhhcccccceeeecccCc-ccccccc----chhhccchhhhhhcccccccccccceeEEeeeehhhhhhhc
Confidence 01111111123469999999776654 3333321 1233577888888777765332111 223345555555
Q ss_pred EeCC
Q 044935 653 IYGC 656 (683)
Q Consensus 653 l~~c 656 (683)
=.+|
T Consensus 361 ~~di 364 (505)
T KOG3207|consen 361 DVDI 364 (505)
T ss_pred cccc
Confidence 4444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.79 E-value=7e-10 Score=106.19 Aligned_cols=150 Identities=19% Similarity=0.118 Sum_probs=84.7
Q ss_pred ccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCcc--CcchHhhccccceEee
Q 044935 463 EQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVV--PINWIMSLTNLRDLYL 540 (683)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l 540 (683)
...+.|+.+....|.+-+. ....+-..+..++.|+.+.+..|.+...-+ ....+..+++|+.|+|
T Consensus 154 ~~~~~Lrv~i~~rNrlen~-------------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENG-------------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDL 220 (382)
T ss_pred CCCcceEEEEeeccccccc-------------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeec
Confidence 3456777777777764332 234445556666788888887776654211 1233457788888888
Q ss_pred cCCCCCCCCC-----CCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccc
Q 044935 541 SYCRNCEHLP-----PLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIK 615 (683)
Q Consensus 541 ~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 615 (683)
.+|.+...-. .+..+|+|+.|++..|. +.+.-... -..+....+|+|+.|.+.+|. ++.-.. ..+.
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcl----l~~~Ga~a---~~~al~~~~p~L~vl~l~gNe-It~da~-~~la 291 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCL----LENEGAIA---FVDALKESAPSLEVLELAGNE-ITRDAA-LALA 291 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccc----cccccHHH---HHHHHhccCCCCceeccCcch-hHHHHH-HHHH
Confidence 8876554321 16677788888887775 21110000 000011247888888887764 221111 0111
Q ss_pred cccccCCcccEEeecCCCC
Q 044935 616 GEIIIMPRLSSLSIDDCPK 634 (683)
Q Consensus 616 ~~~~~l~~L~~L~l~~c~~ 634 (683)
..+...|.|+.|.|++|..
T Consensus 292 ~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcchhhHHhcCCcccc
Confidence 2233578999999999975
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.75 E-value=1.9e-09 Score=103.30 Aligned_cols=150 Identities=18% Similarity=0.152 Sum_probs=98.9
Q ss_pred hhhcCCCCCccEEEEeeecCCCCcc--CcchHhhccccceEeecCCCCCCCCC-----CCCCCCCcceEEecCCCCeeEe
Q 044935 500 LEALGPPPNLKELRIHEYRGRRNVV--PINWIMSLTNLRDLYLSYCRNCEHLP-----PLGKLPSLEDLHILGMESVKRV 572 (683)
Q Consensus 500 ~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~l~~~ 572 (683)
..-.+..+.|+.+....|....... ....+...+.|+.+.+..|.+...-- .+..+|+|+.|+|..+
T Consensus 150 ~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN------ 223 (382)
T KOG1909|consen 150 NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN------ 223 (382)
T ss_pred HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc------
Confidence 3455677899999999888765211 12345677899999999987543211 1788999999999653
Q ss_pred cccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCc----CCcCCCCCCCC
Q 044935 573 GNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKA----LPDRLLQKTTL 648 (683)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~----lp~~l~~l~~L 648 (683)
-|+...+...+.....||+|+.|.+++|. |+...-.......-...|+|++|.+.+|..... +...+...+.|
T Consensus 224 --tft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 224 --TFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred --hhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 33221111111123468899999999884 555432211222223589999999999986443 33355668999
Q ss_pred ceEEEeCCcc
Q 044935 649 QRLEIYGCPI 658 (683)
Q Consensus 649 ~~L~l~~c~~ 658 (683)
+.|++++|..
T Consensus 301 ~kLnLngN~l 310 (382)
T KOG1909|consen 301 EKLNLNGNRL 310 (382)
T ss_pred HHhcCCcccc
Confidence 9999999964
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=1.2e-08 Score=91.87 Aligned_cols=102 Identities=28% Similarity=0.361 Sum_probs=24.9
Q ss_pred cCCccEEEEeCCCCccccccchhhhc-CCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHH-h
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFD-KLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVL-C 375 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~ 375 (683)
..+++.|++.+|.+..+. . ++ .+.+|++|+|++ +.+..++ .+..+++|++|++++|. +..+++.+ .
T Consensus 18 ~~~~~~L~L~~n~I~~Ie----~-L~~~l~~L~~L~Ls~-----N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE----N-LGATLDKLEVLDLSN-----NQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TT-----S--S--T-T----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccccc----c-hhhhhcCCCEEECCC-----CCCcccc-CccChhhhhhcccCCCC-CCccccchHH
Confidence 334555666655542211 1 22 345556666665 3334443 34455666666666665 55554433 2
Q ss_pred cccCCcEEeccCccchhhcc--cccccccccceEecCCC
Q 044935 376 ELYNLERLDVRFCVNLRELL--QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~ 412 (683)
.+++|++|++++|. +..+- ..+..+++|+.|++.+|
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred hCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCC
Confidence 45666666666554 33322 23345556666666555
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1.1e-08 Score=108.05 Aligned_cols=92 Identities=36% Similarity=0.459 Sum_probs=62.9
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCCC-CCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccccccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNLL-HLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGK 400 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 400 (683)
+..+..+..|++.+ +.+..+|.....+. +|+.|++++|. +..+|..+..+++|+.|++++|. +..+|...+.
T Consensus 112 ~~~~~~l~~L~l~~-----n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDN-----NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCC-----cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhh
Confidence 44456677777776 66667776666664 77777777777 77776667777777777777776 6777766667
Q ss_pred ccccceEecCCCccccccccc
Q 044935 401 LRKLMYLDNEGTNSLRFLPVG 421 (683)
Q Consensus 401 l~~L~~L~l~~~~~~~~~p~~ 421 (683)
+++|+.|++++| .+..+|..
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~ 204 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPE 204 (394)
T ss_pred hhhhhheeccCC-ccccCchh
Confidence 777777777776 34555543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.2e-08 Score=107.55 Aligned_cols=180 Identities=31% Similarity=0.384 Sum_probs=131.0
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCC-ceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLT-CLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCE 376 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~ 376 (683)
.+.+..|++.++.+.. ++.....+. +|+.|++++ +.+..+|..++.+++|+.|++++|. +..+|...+.
T Consensus 115 ~~~l~~L~l~~n~i~~----i~~~~~~~~~nL~~L~l~~-----N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 115 LTNLTSLDLDNNNITD----IPPLIGLLKSNLKELDLSD-----NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred ccceeEEecCCccccc----Cccccccchhhcccccccc-----cchhhhhhhhhccccccccccCCch-hhhhhhhhhh
Confidence 6789999999998632 444455564 999999999 7788898889999999999999999 9999997779
Q ss_pred ccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhH
Q 044935 377 LYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGE 456 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~ 456 (683)
+++|+.|++++|. +..+|..+..+..|+.|.+++|. ....+..+.++.
T Consensus 185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~------------------------------ 232 (394)
T COG4886 185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLK------------------------------ 232 (394)
T ss_pred hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcc------------------------------
Confidence 9999999999998 89999888788889999999884 222333333222
Q ss_pred hHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccc
Q 044935 457 ARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLR 536 (683)
Q Consensus 457 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 536 (683)
++..+.+..+. ...++..++.++++++|++++|.+.. + +. +..+.+|+
T Consensus 233 ----------~l~~l~l~~n~------------------~~~~~~~~~~l~~l~~L~~s~n~i~~--i-~~-~~~~~~l~ 280 (394)
T COG4886 233 ----------NLSGLELSNNK------------------LEDLPESIGNLSNLETLDLSNNQISS--I-SS-LGSLTNLR 280 (394)
T ss_pred ----------cccccccCCce------------------eeeccchhccccccceeccccccccc--c-cc-ccccCccC
Confidence 22222222222 11113455666677777777777766 4 22 67778888
Q ss_pred eEeecCCCCCCCCCC
Q 044935 537 DLYLSYCRNCEHLPP 551 (683)
Q Consensus 537 ~L~l~~~~~~~~~~~ 551 (683)
.|+++++.....++.
T Consensus 281 ~L~~s~n~~~~~~~~ 295 (394)
T COG4886 281 ELDLSGNSLSNALPL 295 (394)
T ss_pred EEeccCccccccchh
Confidence 888888776665554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.9e-08 Score=90.47 Aligned_cols=134 Identities=23% Similarity=0.219 Sum_probs=48.2
Q ss_pred hcCCCceeEEEecccCCcccCccccccccc-CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccccc-c
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIK-NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGI-G 399 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 399 (683)
+.+...++.|+|++ +.|..+. .++ .+.+|+.|++++|. ++.++. +..+++|++|++++|. ++.++..+ .
T Consensus 15 ~~n~~~~~~L~L~~-----n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRG-----NQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccc-----ccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHH
Confidence 44556789999999 5555553 455 58899999999999 999986 8999999999999988 87776666 4
Q ss_pred cccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEee
Q 044935 400 KLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFC 476 (683)
Q Consensus 400 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 476 (683)
.+++|++|++++|.. .. +. .+..|..++.|+.+.+.+.+-.. ...-....+..+++|+.||-...
T Consensus 86 ~lp~L~~L~L~~N~I-~~----l~------~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNNKI-SD----LN------ELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS----S----CC------CCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCCcC-CC----hH------HhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence 689999999998832 22 11 23333344444444444322211 11223344566788888776544
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=2.1e-08 Score=93.85 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=35.0
Q ss_pred CCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 353 LLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
.+.|..+|||+|. ++.+-+++.-++.++.|+++.|. +..+. .+..|++|++||+++|
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGN 339 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccc
Confidence 4556666666666 66666666666666666666665 33332 3556666666666665
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=2e-08 Score=94.02 Aligned_cols=124 Identities=26% Similarity=0.238 Sum_probs=64.5
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
+.+..+.++.|.+..+.+++.- .+.+|.|+++.|.+.. +. .+..+++|..|||++ |.+.++-..-.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL----~Pkir~L~lS~N~i~~----v~-nLa~L~~L~~LDLS~-----N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKL----APKLRRLILSQNRIRT----VQ-NLAELPQLQLLDLSG-----NLLAECVGWHL 349 (490)
T ss_pred hhhhhccccccchhhhhhhhhh----ccceeEEeccccceee----eh-hhhhcccceEeeccc-----chhHhhhhhHh
Confidence 3445555555555544444433 5566666666655321 11 145555566666665 33333333333
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcc--cccccccccceEecCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELL--QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~ 412 (683)
+|-+.+.|.|++|. ++.+.. +++|.+|..||+++|+ ++.+- .+|++|+.|+++.+.+|
T Consensus 350 KLGNIKtL~La~N~-iE~LSG-L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNK-IETLSG-LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhcCEeeeehhhhh-Hhhhhh-hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 45555666666655 555544 5566666666666554 44332 34566666666665555
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=6.1e-07 Score=99.29 Aligned_cols=92 Identities=26% Similarity=0.423 Sum_probs=55.3
Q ss_pred eeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceE
Q 044935 328 LRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYL 407 (683)
Q Consensus 328 L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 407 (683)
++.|+|++|.+. ..+|..++.+++|++|+|++|...+.+|..++.+++|++|+|++|.....+|..+++|++|++|
T Consensus 420 v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 556666664332 3456666666666666666666334666666666666666666665444566666666666666
Q ss_pred ecCCCccccccccccC
Q 044935 408 DNEGTNSLRFLPVGIG 423 (683)
Q Consensus 408 ~l~~~~~~~~~p~~~~ 423 (683)
++++|.....+|..++
T Consensus 496 ~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 496 NLNGNSLSGRVPAALG 511 (623)
T ss_pred ECcCCcccccCChHHh
Confidence 6666655555665544
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=7.2e-08 Score=90.40 Aligned_cols=186 Identities=20% Similarity=0.174 Sum_probs=121.9
Q ss_pred CceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc--ccccccc
Q 044935 326 TCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ--GIGKLRK 403 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~ 403 (683)
..|++|||++..++. ..+-.-++.|.+|+.|.|.++..-..+-..|.+-.+|+.|+|+.|..+++... -+.+++.
T Consensus 185 sRlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 358899998833221 23334456788899999999885556777788888999999999886665432 2477888
Q ss_pred cceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCc
Q 044935 404 LMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDE 483 (683)
Q Consensus 404 L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 483 (683)
|..|+++.|........ ..... --++|..|+++++...-
T Consensus 262 L~~LNlsWc~l~~~~Vt------------------------------------v~V~h--ise~l~~LNlsG~rrnl--- 300 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVT------------------------------------VAVAH--ISETLTQLNLSGYRRNL--- 300 (419)
T ss_pred HhhcCchHhhccchhhh------------------------------------HHHhh--hchhhhhhhhhhhHhhh---
Confidence 88888888843322111 00011 11467777887775211
Q ss_pred ccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCC--CCCCCCCCCCcceE
Q 044935 484 EQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCE--HLPPLGKLPSLEDL 561 (683)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L 561 (683)
....+..-...+++|..|+|+++....... ...+..++.|++|.++.|.... .+-.+...|+|.+|
T Consensus 301 -----------~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 301 -----------QKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred -----------hhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 122333344578899999999887766433 4455688899999999885331 12227888899999
Q ss_pred EecCCC
Q 044935 562 HILGME 567 (683)
Q Consensus 562 ~L~~~~ 567 (683)
++.||-
T Consensus 369 dv~g~v 374 (419)
T KOG2120|consen 369 DVFGCV 374 (419)
T ss_pred Eecccc
Confidence 887753
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=9.6e-07 Score=97.71 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCC
Q 044935 301 LRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNL 380 (683)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L 380 (683)
++.|++++|.+. ..+|..+..+++|+.|+|++|.+. ..+|..++.+++|++|+|++|.....+|+.+++|++|
T Consensus 420 v~~L~L~~n~L~---g~ip~~i~~L~~L~~L~Ls~N~l~----g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLR---GFIPNDISKLRHLQSINLSGNSIR----GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCCCcc---ccCCHHHhCCCCCCEEECCCCccc----CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 566777776642 445666777777777777774332 3567677777777777777777445677777777777
Q ss_pred cEEeccCccchhhcccccccc-cccceEecCCCcc
Q 044935 381 ERLDVRFCVNLRELLQGIGKL-RKLMYLDNEGTNS 414 (683)
Q Consensus 381 ~~L~L~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~ 414 (683)
++|+|++|.....+|..++.+ .++..+++.+|..
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 777777776555667666543 3556666666643
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.8e-06 Score=63.52 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=5.8
Q ss_pred cCCCCCcEEeecCCC
Q 044935 351 KNLLHLKYLSLFGES 365 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~ 365 (683)
..+++|++|++++|.
T Consensus 22 ~~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 22 SNLPNLETLDLSNNN 36 (61)
T ss_dssp TTGTTESEEEETSSS
T ss_pred cCCCCCCEeEccCCc
Confidence 333333333333333
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.7e-08 Score=90.64 Aligned_cols=164 Identities=22% Similarity=0.282 Sum_probs=118.3
Q ss_pred ccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEee
Q 044935 461 ELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYL 540 (683)
Q Consensus 461 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 540 (683)
.+..+.+|+.|.+.++.+ .+.+...++.-.+|+.|+++.+.+.+.-...-.+.+++.|..|++
T Consensus 205 iLs~C~kLk~lSlEg~~L-----------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRL-----------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred HHHHHHhhhhcccccccc-----------------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 456778888888888873 345566778889999999999998763221334568999999999
Q ss_pred cCCCCCCCCCC---CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccc
Q 044935 541 SYCRNCEHLPP---LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGE 617 (683)
Q Consensus 541 ~~~~~~~~~~~---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 617 (683)
++|......-. -.--++|+.|+++||...-... . .+.....+|+|..|+++.|-.|+.-.+ ..
T Consensus 268 sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h--------~~tL~~rcp~l~~LDLSD~v~l~~~~~-----~~ 333 (419)
T KOG2120|consen 268 SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-H--------LSTLVRRCPNLVHLDLSDSVMLKNDCF-----QE 333 (419)
T ss_pred hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-H--------HHHHHHhCCceeeeccccccccCchHH-----HH
Confidence 99976554322 1123689999999976431110 1 112234799999999999988887444 24
Q ss_pred cccCCcccEEeecCCCCCCcCCc---CCCCCCCCceEEEeCCc
Q 044935 618 IIIMPRLSSLSIDDCPKLKALPD---RLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 618 ~~~l~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~c~ 657 (683)
+..|+.|++|.++.|- .-+|. .+...|+|.+|++.||-
T Consensus 334 ~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecccc
Confidence 5679999999999995 33555 34568999999999984
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.2e-06 Score=63.06 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=50.6
Q ss_pred CCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCc
Q 044935 354 LHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 413 (683)
++|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999997 888884 67899999999999887 777764 67999999999999984
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.7e-06 Score=81.32 Aligned_cols=207 Identities=17% Similarity=0.163 Sum_probs=125.8
Q ss_pred hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCcc--ccchH
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIK--RLPEV 373 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~lp~~ 373 (683)
..+++++.+++.+|.++.... +...+.+++.|++|+|+.|.++ ..|+++| ..+.+|+.|-|.++. +. ..-..
T Consensus 68 ~~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L~-s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSLS-SDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTSS 141 (418)
T ss_pred HHhhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcCC-CccccCc---ccccceEEEEEcCCC-CChhhhhhh
Confidence 347888889999888764433 4455788889999999887776 6677776 346788888887766 32 34455
Q ss_pred HhcccCCcEEeccCccchhhcc---cccccc-cccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCC
Q 044935 374 LCELYNLERLDVRFCVNLRELL---QGIGKL-RKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRG 449 (683)
Q Consensus 374 i~~L~~L~~L~L~~~~~l~~lp---~~i~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~ 449 (683)
+..++.++.|.++.|. +..+- ..+... +.+++|...+|....+
T Consensus 142 l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w-------------------------------- 188 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW-------------------------------- 188 (418)
T ss_pred hhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHH--------------------------------
Confidence 6777788888887764 22211 111111 1233333333311000
Q ss_pred CCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchH
Q 044935 450 GVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWI 529 (683)
Q Consensus 450 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 529 (683)
........-++++..+.+..|++... .-......++.+.-|+|+.+++..-.- ...+
T Consensus 189 ------~~~~~l~r~Fpnv~sv~v~e~PlK~~----------------s~ek~se~~p~~~~LnL~~~~idswas-vD~L 245 (418)
T KOG2982|consen 189 ------LNKNKLSRIFPNVNSVFVCEGPLKTE----------------SSEKGSEPFPSLSCLNLGANNIDSWAS-VDAL 245 (418)
T ss_pred ------HHHHhHHhhcccchheeeecCcccch----------------hhcccCCCCCcchhhhhcccccccHHH-HHHH
Confidence 00001122346677777777754221 123445566777788888877655222 4556
Q ss_pred hhccccceEeecCCCCCCCCCC-------CCCCCCcceEEec
Q 044935 530 MSLTNLRDLYLSYCRNCEHLPP-------LGKLPSLEDLHIL 564 (683)
Q Consensus 530 ~~l~~L~~L~l~~~~~~~~~~~-------l~~l~~L~~L~L~ 564 (683)
..++.|..|.++++++++.+.. ++.+++++.|+=+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 6899999999999988876654 6778888777543
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=9.3e-06 Score=82.35 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=37.4
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ 396 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 396 (683)
+..+.+++.|++++ +.+..+|. --.+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~-----c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKD-----CDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCC-----CCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 33456677777776 34455552 112466677776666666665442 4666666666654555554
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=9.9e-07 Score=93.23 Aligned_cols=103 Identities=24% Similarity=0.348 Sum_probs=62.3
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+..+..+.+..|.+.. .-..+..+++|..|++.+ +.++.+...+..+++|++|++++|. |+.+.. +..+
T Consensus 71 l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~-----n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l 139 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYD-----NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTL 139 (414)
T ss_pred hHhHHhhccchhhhhh----hhcccccccceeeeeccc-----cchhhcccchhhhhcchheeccccc-cccccc-hhhc
Confidence 4445555555554321 122255666777777776 5555555546667777777777776 666665 6666
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCc
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 413 (683)
+.|+.|++++|. +..+ ..+..+++|+.+++++|.
T Consensus 140 ~~L~~L~l~~N~-i~~~-~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 140 TLLKELNLSGNL-ISDI-SGLESLKSLKLLDLSYNR 173 (414)
T ss_pred cchhhheeccCc-chhc-cCCccchhhhcccCCcch
Confidence 777777777766 5444 244556677777776663
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.1e-05 Score=54.21 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=15.8
Q ss_pred CCcEEeecCCCCccccchHHhcccCCcEEeccCcc
Q 044935 355 HLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 389 (683)
+|++|++++|. +..+|+.+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 34455555544 44454444555555555555443
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=2.6e-05 Score=79.21 Aligned_cols=39 Identities=36% Similarity=0.493 Sum_probs=17.2
Q ss_pred eeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccch
Q 044935 328 LRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE 372 (683)
Q Consensus 328 L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~ 372 (683)
|+.|.+++| ..+..+|..+ ..+|++|++++|..+..+|.
T Consensus 74 LtsL~Lsnc----~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 74 LTEITIENC----NNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CcEEEccCC----CCcccCCchh--hhhhhheEccCccccccccc
Confidence 555555443 2334444332 13455555555533444443
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=2.2e-06 Score=90.58 Aligned_cols=105 Identities=24% Similarity=0.364 Sum_probs=81.4
Q ss_pred hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHh
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLC 375 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~ 375 (683)
..++.|..|++.+|.+.. +...+..+.+|++|++++ +.|..+.. +..+..|+.|++++|. +..++. +.
T Consensus 92 ~~~~~l~~l~l~~n~i~~----i~~~l~~~~~L~~L~ls~-----N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~ 159 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK----IENLLSSLVNLQVLDLSF-----NKITKLEG-LSTLTLLKELNLSGNL-ISDISG-LE 159 (414)
T ss_pred ccccceeeeeccccchhh----cccchhhhhcchheeccc-----cccccccc-hhhccchhhheeccCc-chhccC-Cc
Confidence 348889999999998632 333367789999999999 55566643 6777889999999998 888876 67
Q ss_pred cccCCcEEeccCccchhhcccc-cccccccceEecCCCc
Q 044935 376 ELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEGTN 413 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 413 (683)
.+++|+.+++++|. +..+... ...+.+|+.+++.+|.
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 79999999999987 5555443 5778889999888874
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.9e-05 Score=52.99 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=31.0
Q ss_pred CceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccch
Q 044935 326 TCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE 372 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~ 372 (683)
++|++|++++ +.+..+|..+++|++|++|++++|. +..+|.
T Consensus 1 ~~L~~L~l~~-----N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-----NQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETS-----SS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccC-----CCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 4688888888 6667788778888888888888887 776654
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.77 E-value=8.4e-06 Score=75.83 Aligned_cols=272 Identities=17% Similarity=0.082 Sum_probs=130.0
Q ss_pred cCCccEEEEeCCCCccc-cccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhc
Q 044935 298 MRRLRSLSVEGGEYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCE 376 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~ 376 (683)
+..+..++++||.++.- ...+...+.+-++|++.+++....+ -...++|++ +.-+.+.+-+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftg-r~kde~~~~-----------------L~~Ll~aLlk 90 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTG-RDKDELYSN-----------------LVMLLKALLK 90 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhc-ccHHHHHHH-----------------HHHHHHHHhc
Confidence 56666666777665311 1223334455566666666542110 001112211 1122233556
Q ss_pred ccCCcEEeccCccchhhcccc----cccccccceEecCCCccccccc-cccCCCCCCCCccccccCccCCCeeEcCCCCC
Q 044935 377 LYNLERLDVRFCVNLRELLQG----IGKLRKLMYLDNEGTNSLRFLP-VGIGELISLRNLGSLKKLNLLRECWICGRGGV 451 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~ 451 (683)
+++|++.+|+.|..-...|.. |.+-+.|.||.+++|.. +.+. ..+++ .|.+|.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigk--------al~~la------------- 148 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGK--------ALFHLA------------- 148 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHH--------HHHHHH-------------
Confidence 667777777766544444433 35556777777777632 1111 11111 011110
Q ss_pred CChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCcc---Ccch
Q 044935 452 SDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVV---PINW 528 (683)
Q Consensus 452 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~ 528 (683)
......+.+.|+...+..|.+-... ....-..+....+|+.+.+..|.+...-+ .-..
T Consensus 149 ------~nKKaa~kp~Le~vicgrNRlengs-------------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~g 209 (388)
T COG5238 149 ------YNKKAADKPKLEVVICGRNRLENGS-------------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLG 209 (388)
T ss_pred ------HHhhhccCCCceEEEeccchhccCc-------------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHH
Confidence 0112334567778877777653332 12222334445688888888877654211 0112
Q ss_pred HhhccccceEeecCCCCCCCCC-----CCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccc
Q 044935 529 IMSLTNLRDLYLSYCRNCEHLP-----PLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTME 603 (683)
Q Consensus 529 ~~~l~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 603 (683)
+..+++|+.|++.+|.++-.-. .+...+.|+.|.+..|---..-...+... .+...+|+|..|...++.
T Consensus 210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~------f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR------FNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH------hhhhcCCCccccccchhh
Confidence 2367889999998886543221 15567778888887774110000000000 011246677777554432
Q ss_pred cccccccccccc-cccccCCcccEEeecCCCC
Q 044935 604 ELEEWDFRTAIK-GEIIIMPRLSSLSIDDCPK 634 (683)
Q Consensus 604 ~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~ 634 (683)
.=...-.....+ ....++|-|..|.+.+|+.
T Consensus 284 ~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 284 RRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred hcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 111111100011 1123577788888877764
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=6.3e-06 Score=68.57 Aligned_cols=84 Identities=29% Similarity=0.319 Sum_probs=46.9
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCC-CCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccccccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNL-LHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGK 400 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l-~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 400 (683)
+.+..+|...+|++ |.++++|+.+... +.+..|++++|. +.++|.++..++.|+.|+++.|. +...|..+..
T Consensus 49 l~~~~el~~i~ls~-----N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~ 121 (177)
T KOG4579|consen 49 LSKGYELTKISLSD-----NGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAP 121 (177)
T ss_pred HhCCceEEEEeccc-----chhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHH
Confidence 34445555555555 4555555544332 355666666655 66666556666666666666555 5555555555
Q ss_pred ccccceEecCCC
Q 044935 401 LRKLMYLDNEGT 412 (683)
Q Consensus 401 l~~L~~L~l~~~ 412 (683)
|.+|-.|+..++
T Consensus 122 L~~l~~Lds~~n 133 (177)
T KOG4579|consen 122 LIKLDMLDSPEN 133 (177)
T ss_pred HHhHHHhcCCCC
Confidence 556666655554
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=8.8e-06 Score=85.76 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=16.0
Q ss_pred cccccccCceEEEEEEecCCC
Q 044935 265 IMSSFEQKKVLHLMLTIDEGT 285 (683)
Q Consensus 265 ~~~~~~~~~~~~l~l~~~~~~ 285 (683)
+.+.+....+|++.+.+.++.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred CceeccccceeeEEecCcchh
Confidence 666777788888888877654
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.2e-05 Score=86.73 Aligned_cols=107 Identities=23% Similarity=0.326 Sum_probs=69.7
Q ss_pred cCCccEEEEeCCCCccccccchhhh-cCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLF-DKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCE 376 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~ 376 (683)
-.+|+.|+++|.... ....|..+ ..+|+|+.|.+.+-.+.. .++-.-..++++|+.||+|++. +..+ ..+++
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTN-ISNL-SGISR 193 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCC-ccCc-HHHhc
Confidence 456777777776532 22233333 457888888887733221 2233445678888888888887 8777 44888
Q ss_pred ccCCcEEeccCccchhhcc--cccccccccceEecCCC
Q 044935 377 LYNLERLDVRFCVNLRELL--QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~ 412 (683)
|++||+|.+++=. ++.-. ..+.+|++|++||++..
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccc
Confidence 8888888887533 22211 35577888888888775
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=5.9e-05 Score=83.42 Aligned_cols=133 Identities=24% Similarity=0.252 Sum_probs=89.9
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
.+++++.+.+...-. ..+..+--..+|.|++|.+.+-.+. ...+.....++++|+.||+++ +.+..+ .+++
T Consensus 122 ~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~-----TnI~nl-~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISG-----TNISNL-SGIS 192 (699)
T ss_pred HhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCC-----CCccCc-HHHh
Confidence 456677776543221 1111122234899999999987652 222445568899999999999 555566 7789
Q ss_pred CCCCCcEEeecCCCCccccc--hHHhcccCCcEEeccCccchhh------cccccccccccceEecCCCcc
Q 044935 352 NLLHLKYLSLFGESEIKRLP--EVLCELYNLERLDVRFCVNLRE------LLQGIGKLRKLMYLDNEGTNS 414 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~------lp~~i~~l~~L~~L~l~~~~~ 414 (683)
+|++|+.|.+++-. +..-. ..+.+|++|++||+|....... .-+.-..||+|+.||.+++..
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99999999998866 54433 3588999999999997653221 112224589999999998754
No 58
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.43 E-value=0.0055 Score=72.46 Aligned_cols=201 Identities=15% Similarity=0.151 Sum_probs=114.7
Q ss_pred HHHHHHHHcC--CceEEEEEEcCCCCCccChH-hHHHhhhCCCCCcEEEEEecCchhhh--ccCC---------------
Q 044935 30 LMQHIQECVE--GEKFLLVLDDLWNKDYYKWE-PFYNCLKNGLHGSKILITTRNETTAH--NMGS--------------- 89 (683)
Q Consensus 30 ~~~~l~~~l~--~kr~LlvLDdv~~~~~~~~~-~l~~~~~~~~~gs~iivTTr~~~v~~--~~~~--------------- 89 (683)
....+...+. ..+++|||||+...+..... .+...+.....+-++|||||...-.. .+..
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~ 187 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFD 187 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCC
Confidence 3333444443 68999999999655433333 33333444456778889999742110 0000
Q ss_pred -cchHHHHHHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCC-HHHHHHHHHhhhhcccc-ccccchHHH
Q 044935 90 -TNIIQLMFSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNN-EEEWKNILESEIWEHEV-VKKGLLAPL 166 (683)
Q Consensus 90 -~~~~~ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~-~~~w~~~l~~~~~~~~~-~~~~~~~~l 166 (683)
.+..+++....+.. --.+.+.++.+.|+|.|+++..++..++.... ... ... .... ....+...+
T Consensus 188 ~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~l 255 (903)
T PRK04841 188 HQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNSSLHD---SAR----RLAGINASHLSDYL 255 (903)
T ss_pred HHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhh---hhH----hhcCCCchhHHHHH
Confidence 01111121111111 12345678999999999999999988754421 111 011 0111 112244433
Q ss_pred H-HhhcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHHhCcHHHHHHHHHhcCCceeecCCCCCCeeEEehhHHHHHHH
Q 044935 167 L-LSYNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMAQGYLNEYFNILASSSFFQEFNADGDGEVYMCKMHDLVHDLA 245 (683)
Q Consensus 167 ~-~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~l~~L~~~~ll~~~~~~~~g~~~~~~mhdl~~~~~ 245 (683)
. -.++.||+..+..+...|+++ .++ .++...-.+..-....++++.+.+++.... +.++. .++.|++++++.
T Consensus 256 ~~~v~~~l~~~~~~~l~~~a~~~---~~~-~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~-~~~~~--~yr~H~L~r~~l 328 (903)
T PRK04841 256 VEEVLDNVDLETRHFLLRCSVLR---SMN-DALIVRVTGEENGQMRLEELERQGLFIQRM-DDSGE--WFRYHPLFASFL 328 (903)
T ss_pred HHHHHhcCCHHHHHHHHHhcccc---cCC-HHHHHHHcCCCcHHHHHHHHHHCCCeeEee-cCCCC--EEehhHHHHHHH
Confidence 3 347899999999999999986 233 334443333344457899999999975321 12222 257899999998
Q ss_pred HHHh
Q 044935 246 QFIW 249 (683)
Q Consensus 246 ~~~~ 249 (683)
..-.
T Consensus 329 ~~~l 332 (903)
T PRK04841 329 RHRC 332 (903)
T ss_pred HHHH
Confidence 7654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=4.6e-05 Score=63.56 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=82.0
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLH 355 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~ 355 (683)
.+.++++.+..++.... .+.+..+|...++++|.+. ...+++-..++.++.|+|++ +.+..+|..+..++.
T Consensus 31 ~ldLssc~lm~i~davy-~l~~~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~-----neisdvPeE~Aam~a 101 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVY-MLSKGYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLAN-----NEISDVPEELAAMPA 101 (177)
T ss_pred hcccccchhhHHHHHHH-HHhCCceEEEEecccchhh---hCCHHHhhccchhhhhhcch-----hhhhhchHHHhhhHH
Confidence 33344444433333322 2334667778899999863 33334335567899999999 778899999999999
Q ss_pred CcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccccc
Q 044935 356 LKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGI 398 (683)
Q Consensus 356 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 398 (683)
|+.|+++.|. +...|..+..|.+|-.|+..++. ...+|-.+
T Consensus 102 Lr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 102 LRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENA-RAEIDVDL 142 (177)
T ss_pred hhhcccccCc-cccchHHHHHHHhHHHhcCCCCc-cccCcHHH
Confidence 9999999999 88999989999999999999887 66676553
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.31 E-value=9.3e-05 Score=69.09 Aligned_cols=243 Identities=17% Similarity=0.098 Sum_probs=124.2
Q ss_pred CceEEEEEEecCCCC-cccccchhhhccCCccEEEEeCCCCccccccc-------hhhhcCCCceeEEEecccCCcccCc
Q 044935 272 KKVLHLMLTIDEGTS-VPISIWNNVKRMRRLRSLSVEGGEYSWSSKVL-------PQLFDKLTCLRAITLETYGWDYNPI 343 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~l~~L~~L~L~~~~~~~~~~ 343 (683)
..+..+.+++|.+.+ -..++.+.+.+-++|+...+++...+.....+ ..++.+|++|+..+||.|-++-...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 456677777776543 34455566666778888887765432222222 2345667777777777755443333
Q ss_pred ccccccccCCCCCcEEeecCCCCccccc-hHHh-------------cccCCcEEeccCccchhhcccc-----ccccccc
Q 044935 344 KEIPTNIKNLLHLKYLSLFGESEIKRLP-EVLC-------------ELYNLERLDVRFCVNLRELLQG-----IGKLRKL 404 (683)
Q Consensus 344 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i~-------------~L~~L~~L~L~~~~~l~~lp~~-----i~~l~~L 404 (683)
..+.+-++.-+.|+.|.+++|. ++.+. .-|+ .-+.|++.+...|. +...|.. +..-.+|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCc
Confidence 3334445566677777777766 44322 1121 22445555554443 3333221 1111344
Q ss_pred ceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcc
Q 044935 405 MYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEE 484 (683)
Q Consensus 405 ~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 484 (683)
+.+.+..| +.-|.++. ......+..+.+|+.|++..|.++..
T Consensus 188 k~vki~qN---gIrpegv~--------------------------------~L~~~gl~y~~~LevLDlqDNtft~~--- 229 (388)
T COG5238 188 KEVKIQQN---GIRPEGVT--------------------------------MLAFLGLFYSHSLEVLDLQDNTFTLE--- 229 (388)
T ss_pred eeEEeeec---CcCcchhH--------------------------------HHHHHHHHHhCcceeeeccccchhhh---
Confidence 44444443 11222221 11222344566777777777764332
Q ss_pred cccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHh-----hccccceEeecCCCCCCC------CCC--
Q 044935 485 QAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIM-----SLTNLRDLYLSYCRNCEH------LPP-- 551 (683)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~------~~~-- 551 (683)
....+-..+..++.|+.|.+.+|-....-. ...+. ..++|..|-..+|..-.. ++.
T Consensus 230 ----------gS~~La~al~~W~~lrEL~lnDClls~~G~-~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e 298 (388)
T COG5238 230 ----------GSRYLADALCEWNLLRELRLNDCLLSNEGV-KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE 298 (388)
T ss_pred ----------hHHHHHHHhcccchhhhccccchhhccccH-HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence 123334455556667777777776554211 22222 356777777766653321 222
Q ss_pred CCCCCCcceEEecC
Q 044935 552 LGKLPSLEDLHILG 565 (683)
Q Consensus 552 l~~l~~L~~L~L~~ 565 (683)
-+.+|-|..|.+.|
T Consensus 299 ~~~~p~L~~le~ng 312 (388)
T COG5238 299 QDAVPLLVDLERNG 312 (388)
T ss_pred hcccHHHHHHHHcc
Confidence 34566666666654
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=8.7e-05 Score=70.21 Aligned_cols=192 Identities=18% Similarity=0.082 Sum_probs=103.6
Q ss_pred cCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCC---ccccchHHhcccCCcEEeccCccc-hhhccccc
Q 044935 323 DKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESE---IKRLPEVLCELYNLERLDVRFCVN-LRELLQGI 398 (683)
Q Consensus 323 ~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~---~~~lp~~i~~L~~L~~L~L~~~~~-l~~lp~~i 398 (683)
.....++.|+|.+|.+++ -.++..-+.+|++|++|+|+.|+. |+.+| ..+.+|++|-|.|+.. .....+.+
T Consensus 68 ~~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhh
Confidence 345667777777754421 123333355677777777777662 12233 2455677777766541 12333444
Q ss_pred ccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecC
Q 044935 399 GKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHS 478 (683)
Q Consensus 399 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 478 (683)
..++.++.|.++.|+. +. +.+.. ....+ ..+.+++|....|..
T Consensus 143 ~~lP~vtelHmS~N~~-rq-------------------------~n~Dd----~c~e~-------~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSL-RQ-------------------------LNLDD----NCIED-------WSTEVLTLHQLPCLE 185 (418)
T ss_pred hcchhhhhhhhccchh-hh-------------------------hcccc----ccccc-------cchhhhhhhcCCcHH
Confidence 5566666666665521 10 00000 00000 112445555555531
Q ss_pred CCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCC--CCCCCCCCC
Q 044935 479 RDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCE--HLPPLGKLP 556 (683)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~ 556 (683)
............+|++..+.+..|.+.+... ......++.+-.|.|+.+++.. .+..+..+|
T Consensus 186 ---------------~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 186 ---------------QLWLNKNKLSRIFPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNLGANNIDSWASVDALNGFP 249 (418)
T ss_pred ---------------HHHHHHHhHHhhcccchheeeecCcccchhh-cccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence 1122222333446789999998887665322 3445567777788888775433 344488899
Q ss_pred CcceEEecCCCCeeEe
Q 044935 557 SLEDLHILGMESVKRV 572 (683)
Q Consensus 557 ~L~~L~L~~~~~l~~~ 572 (683)
.|..|.+.+.+-....
T Consensus 250 ~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPL 265 (418)
T ss_pred hhheeeccCCcccccc
Confidence 9999999887654444
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.22 E-value=1.3e-05 Score=84.55 Aligned_cols=124 Identities=20% Similarity=0.262 Sum_probs=90.2
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-c
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-I 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i 350 (683)
..+..++...|........+.- ++.|++|+++.|.+... +++..++.|+.|||++ |.+..+|.- .
T Consensus 164 n~L~~a~fsyN~L~~mD~SLql----l~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsy-----N~L~~vp~l~~ 229 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQL----LPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSY-----NCLRHVPQLSM 229 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHH----HHHhhhhccchhhhhhh-----HHHHhccccccccccc-----chhccccccch
Confidence 3555555666665544444433 88999999999986422 2588899999999999 666777742 2
Q ss_pred cCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcc--cccccccccceEecCCCc
Q 044935 351 KNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELL--QGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 413 (683)
..+. |..|.+++|. ++.+-. +.+|++|+.||+++|- +...- .-++.|..|+.|++.||.
T Consensus 230 ~gc~-L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 230 VGCK-LQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhh-heeeeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2333 9999999998 888876 8999999999999875 43322 235677888999998874
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.71 E-value=0.00029 Score=76.70 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=25.0
Q ss_pred CcccEEeecCCCCCCcCCcC-CC-CCCCCceEEEeCCcchHHHh
Q 044935 622 PRLSSLSIDDCPKLKALPDR-LL-QKTTLQRLEIYGCPILEERC 663 (683)
Q Consensus 622 ~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l~~~~ 663 (683)
..|+.|.++.|...+.--.. .. .+..+..+++.+|+.+....
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 34788888887754432111 11 15677778888887665443
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.67 E-value=0.00028 Score=76.85 Aligned_cols=37 Identities=30% Similarity=0.675 Sum_probs=22.3
Q ss_pred EEeecCCCCC-CcCCcCCCCCCCCceEEEeCCcchHHH
Q 044935 626 SLSIDDCPKL-KALPDRLLQKTTLQRLEIYGCPILEER 662 (683)
Q Consensus 626 ~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~l~~~ 662 (683)
.+.+.+|+.+ ..+.........++.|+++.|...+..
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 4566677666 333333333344899999999865543
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0041 Score=55.99 Aligned_cols=102 Identities=24% Similarity=0.241 Sum_probs=66.6
Q ss_pred CCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccC-CCCCcEEeecCCCCccccch--HHh
Q 044935 299 RRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKN-LLHLKYLSLFGESEIKRLPE--VLC 375 (683)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~-l~~L~~L~L~~~~~~~~lp~--~i~ 375 (683)
.....+++++|.+.. ++ .|..++.|..|.|.+ |.|..+...+.. +++|..|.|.+|. +..+.+ -+.
T Consensus 42 d~~d~iDLtdNdl~~----l~-~lp~l~rL~tLll~n-----NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK----LD-NLPHLPRLHTLLLNN-----NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLA 110 (233)
T ss_pred cccceecccccchhh----cc-cCCCccccceEEecC-----CcceeeccchhhhccccceEEecCcc-hhhhhhcchhc
Confidence 345567777776522 22 266777888888887 555666555544 4568888888877 655442 266
Q ss_pred cccCCcEEeccCccchhhcc----cccccccccceEecCCC
Q 044935 376 ELYNLERLDVRFCVNLRELL----QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~l~~~ 412 (683)
.++.|++|.+-+|. .+..+ -.+..+++|+.||..+.
T Consensus 111 ~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 77888888887776 44333 13577888888887654
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.05 E-value=0.0089 Score=53.87 Aligned_cols=65 Identities=32% Similarity=0.400 Sum_probs=52.6
Q ss_pred hhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCC--CCCCCCCCCCCcceEEecCC
Q 044935 500 LEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNC--EHLPPLGKLPSLEDLHILGM 566 (683)
Q Consensus 500 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~L~~~ 566 (683)
...+..++.|..|.+.+|.+.. +.|..-..+++|+.|.+.+|.+. +++..+..+|.|++|.+-+.
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 4566778899999999999988 65777778899999999999754 34556888999999999553
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.73 E-value=0.0057 Score=57.52 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=51.0
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCC--CCccccchHHhcccCCcEEeccCccchhhcccc--
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGE--SEIKRLPEVLCELYNLERLDVRFCVNLRELLQG-- 397 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-- 397 (683)
...+..|..|.+.++.+ ..+..+| .|++|++|+++.| .....++....++++|++|++++|. ++. ++.
T Consensus 39 ~d~~~~le~ls~~n~gl--tt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~ 110 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGL--TTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLR 110 (260)
T ss_pred cccccchhhhhhhccce--eecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccc
Confidence 34455566666665433 2333344 4778888888887 4334555545666888888888876 443 333
Q ss_pred -cccccccceEecCCCc
Q 044935 398 -IGKLRKLMYLDNEGTN 413 (683)
Q Consensus 398 -i~~l~~L~~L~l~~~~ 413 (683)
+..+++|..|++.+|.
T Consensus 111 pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcchhhhhcccCC
Confidence 3556667777777763
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.71 E-value=0.0056 Score=57.57 Aligned_cols=105 Identities=30% Similarity=0.260 Sum_probs=64.5
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCcc---ccchHH
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIK---RLPEVL 374 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~---~lp~~i 374 (683)
+..|..|.+.+..++.... |..+++|+.|.++.|... ....++.-...+++|++|++++|+ ++ .+++ +
T Consensus 42 ~~~le~ls~~n~gltt~~~-----~P~Lp~LkkL~lsdn~~~--~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l 112 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN-----FPKLPKLKKLELSDNYRR--VSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-L 112 (260)
T ss_pred ccchhhhhhhccceeeccc-----CCCcchhhhhcccCCccc--ccccceehhhhCCceeEEeecCCc-cccccccch-h
Confidence 5666666666665432222 456778888888885321 112344444556888888888887 54 3444 6
Q ss_pred hcccCCcEEeccCccchhhcc----cccccccccceEecCCC
Q 044935 375 CELYNLERLDVRFCVNLRELL----QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 375 ~~L~~L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~l~~~ 412 (683)
..+.+|..|++.+|.... +- ..+.-+++|++|+-...
T Consensus 113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 777888888888886332 21 12345677777775544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0071 Score=33.60 Aligned_cols=17 Identities=35% Similarity=0.772 Sum_probs=7.5
Q ss_pred CcEEeecCCCCccccchH
Q 044935 356 LKYLSLFGESEIKRLPEV 373 (683)
Q Consensus 356 L~~L~L~~~~~~~~lp~~ 373 (683)
|++|++++|. ++.+|++
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 4444444443 4444443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.0015 Score=61.46 Aligned_cols=99 Identities=24% Similarity=0.227 Sum_probs=56.9
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccch--HHh
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE--VLC 375 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~--~i~ 375 (683)
+.+.+.|++-|+.+..+ ....+|+.|++|.|+- |.|..+.. +..|++|+.|.|+.|. |..+-+ .+.
T Consensus 18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSv-----NkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSV-----NKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHH-----HHHHhcccceeEEeec-----cccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 44455566666654211 1245677777777776 44555533 5667777777777776 655542 355
Q ss_pred cccCCcEEeccCccchhhccc-----ccccccccceEe
Q 044935 376 ELYNLERLDVRFCVNLRELLQ-----GIGKLRKLMYLD 408 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~ 408 (683)
+|++|++|-|..|.....-+. .+.-|++|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 667777777766553332221 234566666665
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.0025 Score=60.07 Aligned_cols=81 Identities=22% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc--cccccc
Q 044935 325 LTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ--GIGKLR 402 (683)
Q Consensus 325 l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~ 402 (683)
+.+.+.|++-||++++ + +-+.+++.|+.|.||-|. +..+.. +..+++|+.|.|+.|. +..+-+ -+.+++
T Consensus 18 l~~vkKLNcwg~~L~D-----I-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-----I-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccH-----H-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 4566778887765543 2 224678889999999988 888876 8899999999998876 555432 347788
Q ss_pred ccceEecCCCcc
Q 044935 403 KLMYLDNEGTNS 414 (683)
Q Consensus 403 ~L~~L~l~~~~~ 414 (683)
+|+.|.+..|.-
T Consensus 89 sLr~LWL~ENPC 100 (388)
T KOG2123|consen 89 SLRTLWLDENPC 100 (388)
T ss_pred hhhhHhhccCCc
Confidence 888888877643
No 72
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.71 E-value=1.4 Score=48.99 Aligned_cols=208 Identities=16% Similarity=0.194 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHcC--CceEEEEEEcCCCCCccChHh-HHHhhhCCCCCcEEEEEecCchh---hhccCCcchHHH----
Q 044935 26 EFQSLMQHIQECVE--GEKFLLVLDDLWNKDYYKWEP-FYNCLKNGLHGSKILITTRNETT---AHNMGSTNIIQL---- 95 (683)
Q Consensus 26 ~~~~~~~~l~~~l~--~kr~LlvLDdv~~~~~~~~~~-l~~~~~~~~~gs~iivTTr~~~v---~~~~~~~~~~~l---- 95 (683)
+...+...+...+. .++..+||||..-........ +.-.+.....+=.+|||||..-- +.---.+...++
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 44456666666664 578999999985443333322 33334455678899999998732 221111122222
Q ss_pred --H-----HHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhhhhccccccccchH-HHH
Q 044935 96 --M-----FSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESEIWEHEVVKKGLLA-PLL 167 (683)
Q Consensus 96 --l-----~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~l~ 167 (683)
| ..|..... ..+--+..++.+.+..+|-+-|+..++=.+++..+.+.-...+... .+.+.. ...
T Consensus 192 Lrf~~eE~~~fl~~~~-~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~-------~~~l~dYL~e 263 (894)
T COG2909 192 LRFDTEEAAAFLNDRG-SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGA-------ASHLSDYLVE 263 (894)
T ss_pred hcCChHHHHHHHHHcC-CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccch-------HHHHHHHHHH
Confidence 1 12211110 0111244568899999999999999998888444443322222210 011111 112
Q ss_pred HhhcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHHhCcHHHHHHHHHhcCCceeecCCCCCCeeEEehhHHHHHHHHH
Q 044935 168 LSYNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMAQGYLNEYFNILASSSFFQEFNADGDGEVYMCKMHDLVHDLAQF 247 (683)
Q Consensus 168 ~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~l~~L~~~~ll~~~~~~~~g~~~~~~mhdl~~~~~~~ 247 (683)
=-++.||++.|..++-+++++.= -++|+..-.+++--...+++|..++++...-.+ .+. -++.|.+..++-+.
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd-~~~--WfryH~LFaeFL~~ 336 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRF----NDELCNALTGEENGQAMLEELERRGLFLQRLDD-EGQ--WFRYHHLFAEFLRQ 336 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhcCCcHHHHHHHHHhCCCceeeecC-CCc--eeehhHHHHHHHHh
Confidence 24588999999999999988542 356777666666666889999999998654332 222 26899999988764
Q ss_pred H
Q 044935 248 I 248 (683)
Q Consensus 248 ~ 248 (683)
-
T Consensus 337 r 337 (894)
T COG2909 337 R 337 (894)
T ss_pred h
Confidence 3
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.014 Score=32.35 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=12.5
Q ss_pred CCcEEeccCccchhhccccccc
Q 044935 379 NLERLDVRFCVNLRELLQGIGK 400 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~~i~~ 400 (683)
+|++||+++|. ++.+|+++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46666666664 5566655543
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.0074 Score=54.42 Aligned_cols=65 Identities=23% Similarity=0.522 Sum_probs=40.2
Q ss_pred cccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCC-cCCCCCCCCceEEEeCCcc
Q 044935 590 AFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALP-DRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 590 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 658 (683)
.+++++.|.+.+|..+.++.+...-+ -.|+|+.|+|++|+.+++-. ..+..+++|+.|.+++-|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 35566666666666666666533222 36777777777777665522 2455677777777776653
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.48 E-value=0.0036 Score=57.43 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=45.9
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+.....|+++.|..- -+...|+.+..|..|+++. +.+..+|+.++.+..++.+++..|. ....|.+.+++
T Consensus 41 ~kr~tvld~~s~r~v----n~~~n~s~~t~~~rl~~sk-----nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~ 110 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV----NLGKNFSILTRLVRLDLSK-----NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKE 110 (326)
T ss_pred cceeeeehhhhhHHH----hhccchHHHHHHHHHhccH-----hhHhhChhhHHHHHHHHHHHhhccc-hhhCCcccccc
Confidence 555666666665431 1222344455555666655 5555566666666666666665555 56666666666
Q ss_pred cCCcEEeccCcc
Q 044935 378 YNLERLDVRFCV 389 (683)
Q Consensus 378 ~~L~~L~L~~~~ 389 (683)
+.++++++.++.
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 666666666554
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.11 E-value=0.068 Score=27.44 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=5.5
Q ss_pred CCcEEeecCCCCcccc
Q 044935 355 HLKYLSLFGESEIKRL 370 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~l 370 (683)
+|+.|++++|. ++.+
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 34444444444 4443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.98 E-value=0.066 Score=27.48 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=9.3
Q ss_pred CcccEEeecCCCCCCcCC
Q 044935 622 PRLSSLSIDDCPKLKALP 639 (683)
Q Consensus 622 ~~L~~L~l~~c~~l~~lp 639 (683)
++|+.|+|++|+ ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888876 55554
No 78
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.96 E-value=10 Score=39.80 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=112.0
Q ss_pred HHHHHHHHHcCCC-CC-CCchhHHHHHHHHHHHcC--CceEEEEEEcCCCCC----ccChHhHHHhhhCCCCCcE--EEE
Q 044935 7 IEARAIIEALKPG-ST-KDLVEFQSLMQHIQECVE--GEKFLLVLDDLWNKD----YYKWEPFYNCLKNGLHGSK--ILI 76 (683)
Q Consensus 7 ~l~~~il~~~~~~-~~-~~~~~~~~~~~~l~~~l~--~kr~LlvLDdv~~~~----~~~~~~l~~~~~~~~~gs~--iiv 76 (683)
.+..+|++++. + .. ....+.++..+.+.+.+. +++.+||||+++.-. ...+..+...+. ...+++ +|.
T Consensus 101 ~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~ 178 (394)
T PRK00411 101 AIFSEIARQLF-GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEE
Confidence 37788888887 4 22 222356677777777775 456899999996532 112333333222 223444 677
Q ss_pred EecCchhhhcc--------CCc----------chHHHHHHh---hc-CCCCCcchHHHHHHHHHHHcCCchHHHHHHHhh
Q 044935 77 TTRNETTAHNM--------GST----------NIIQLMFSF---LG-KSMEGRENLEKIGREIVGKCKGLPLAVKTIGSL 134 (683)
Q Consensus 77 TTr~~~v~~~~--------~~~----------~~~~ll~~~---~~-~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~ 134 (683)
++.+..+.... +.. +..+.+... +. .....+..++.+++......|..+.|+.++-.+
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 76655433221 111 011112111 11 111223334444444444466688888776543
Q ss_pred h--c---CC--CCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhhhhccCCC--CeeeChHHHHHHH--H
Q 044935 135 L--R---SK--NNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFSYCAVFPK--DREIWKYELIKLW--M 203 (683)
Q Consensus 135 L--~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp~--~~~~~~~~li~~w--~ 203 (683)
. + +. -+.+....+.+... .....-.+..||.+.|..+.-++...+ ...+...++.... +
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l 328 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKEL 328 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 2 1 11 24566665555420 122334567888887776655543321 1234444444321 1
Q ss_pred H--hC-------cHHHHHHHHHhcCCceeecC--CCCCCeeEEehh
Q 044935 204 A--QG-------YLNEYFNILASSSFFQEFNA--DGDGEVYMCKMH 238 (683)
Q Consensus 204 ~--~g-------~~~~~l~~L~~~~ll~~~~~--~~~g~~~~~~mh 238 (683)
+ .| .+..++.+|.+.+++..... ...|+.+.++.+
T Consensus 329 ~~~~~~~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 329 CEELGYEPRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred HHHcCCCcCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 1 12 23378999999999986543 234666555544
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.0067 Score=54.68 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=17.4
Q ss_pred ccccccccccccccccccccccccccccccCCcccEEeecC
Q 044935 591 FPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDD 631 (683)
Q Consensus 591 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 631 (683)
.|+|+.|+|++|+.+++..+. .+..+++|+.|.|.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~-----~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLA-----CLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHH-----HHHHhhhhHHHHhcC
Confidence 455555555555555544331 223455555555544
No 80
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.47 E-value=4.1 Score=40.15 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCCCCCCchhH----HHHHHHHHHHc-CCceEEEEEEcCCCCCccChHhHHHhhh---CCCCCcEEEEEec
Q 044935 8 EARAIIEALKPGSTKDLVEF----QSLMQHIQECV-EGEKFLLVLDDLWNKDYYKWEPFYNCLK---NGLHGSKILITTR 79 (683)
Q Consensus 8 l~~~il~~~~~~~~~~~~~~----~~~~~~l~~~l-~~kr~LlvLDdv~~~~~~~~~~l~~~~~---~~~~gs~iivTTr 79 (683)
+++.|.+.++ ....+ ... ..+.+.+.... .++++++|+||+|..+...++.+..... ++.....|++|..
T Consensus 87 ~l~~i~~~lG-~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~ 164 (269)
T TIGR03015 87 LLRMVAADFG-LETEG-RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ 164 (269)
T ss_pred HHHHHHHHcC-CCCCC-CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC
Confidence 6677777766 33222 222 23333333333 6788999999998876556666543221 1122234455554
Q ss_pred CchhhhccCC---------------------cchHHHH-HHhh-cCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhh
Q 044935 80 NETTAHNMGS---------------------TNIIQLM-FSFL-GKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLL 135 (683)
Q Consensus 80 ~~~v~~~~~~---------------------~~~~~ll-~~~~-~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L 135 (683)
.. ....+.. .+..+.+ .... .+......--.+..+.|++.|+|.|..|..++..+
T Consensus 165 ~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 165 PE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 22 1111110 0111112 1111 11101111124678889999999999998888876
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.88 E-value=0.0053 Score=56.39 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=68.4
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKL 401 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 401 (683)
+..+...++||++. +.+-.+-..++-++.|..|+++.+. +..+|+.++.+..++++++..|. .+..|.+.+++
T Consensus 38 i~~~kr~tvld~~s-----~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~ 110 (326)
T KOG0473|consen 38 IASFKRVTVLDLSS-----NRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKE 110 (326)
T ss_pred hhccceeeeehhhh-----hHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCcccccc
Confidence 55667788888887 5566677777788888888888887 88888888888888888887665 78888888888
Q ss_pred cccceEecCCCccc
Q 044935 402 RKLMYLDNEGTNSL 415 (683)
Q Consensus 402 ~~L~~L~l~~~~~~ 415 (683)
+.+++++..++...
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 88888888777543
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.22 E-value=0.91 Score=38.79 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=26.3
Q ss_pred hcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC--CCCCCCcceEEec
Q 044935 502 ALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP--LGKLPSLEDLHIL 564 (683)
Q Consensus 502 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~ 564 (683)
.+..+++|+.+.+.. .... ++...+..+++|+.+.+..+ ...++. +..+++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~--I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKK--IGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--E--E-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeE--eChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 344556677777653 2222 43555666667777777653 222332 5566666666663
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.07 E-value=1.4 Score=37.62 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=47.5
Q ss_pred hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccch-H
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLPE-V 373 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~ 373 (683)
.++++|+.+.+... + ...-...|.++..|+.+.+.+ + +..++ ..+..+..|+.+.+.. . +..++. .
T Consensus 9 ~~~~~l~~i~~~~~-~---~~I~~~~F~~~~~l~~i~~~~-----~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~ 76 (129)
T PF13306_consen 9 YNCSNLESITFPNT-I---KKIGENAFSNCTSLKSINFPN-----N-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNA 76 (129)
T ss_dssp TT-TT--EEEETST------EE-TTTTTT-TT-SEEEESS-----T-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTT
T ss_pred hCCCCCCEEEECCC-e---eEeChhhcccccccccccccc-----c-ccccceeeeecccccccccccc-c-cccccccc
Confidence 34667777777642 1 133344577777778777765 2 34444 3456666777777765 2 444443 3
Q ss_pred HhcccCCcEEeccCccchhhccc-ccccccccceEecCC
Q 044935 374 LCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEG 411 (683)
Q Consensus 374 i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~ 411 (683)
+..+++|+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 455777777777543 444443 34554 666666554
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.11 E-value=0.67 Score=26.75 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=9.4
Q ss_pred CCCcEEeecCCCCccccch
Q 044935 354 LHLKYLSLFGESEIKRLPE 372 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~ 372 (683)
++|++|+|++|. ++.+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 445555555554 555554
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.11 E-value=0.67 Score=26.75 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=9.4
Q ss_pred CCCcEEeecCCCCccccch
Q 044935 354 LHLKYLSLFGESEIKRLPE 372 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~ 372 (683)
++|++|+|++|. ++.+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 445555555554 555554
No 86
>PF13173 AAA_14: AAA domain
Probab=84.55 E-value=1.7 Score=37.17 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhhh
Q 044935 30 LMQHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTAH 85 (683)
Q Consensus 30 ~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~ 85 (683)
..+.+.+....++.+|++|+|... .+|......+.+..+..+||+|+.......
T Consensus 50 ~~~~~~~~~~~~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 50 LLEYFLELIKPGKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred hHHHHHHhhccCCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 345555555557899999999544 579888888888777889999998776653
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.45 E-value=0.71 Score=26.63 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=13.0
Q ss_pred ccCCcEEeccCccchhhccccc
Q 044935 377 LYNLERLDVRFCVNLRELLQGI 398 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~i 398 (683)
|++|++|+|++|. +..+|..+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 3566777777665 66666543
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.45 E-value=0.71 Score=26.63 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=13.0
Q ss_pred ccCCcEEeccCccchhhccccc
Q 044935 377 LYNLERLDVRFCVNLRELLQGI 398 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~i 398 (683)
|++|++|+|++|. +..+|..+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 3566777777665 66666543
No 89
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=81.21 E-value=16 Score=36.84 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHhhhc------CC--CCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhh
Q 044935 111 EKIGREIVGKCKGLPLAVKTIGSLLR------SK--NNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFS 182 (683)
Q Consensus 111 ~~~~~~i~~~c~glPlal~~~~~~L~------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl 182 (683)
.+.+..|++.|+|.|-.+..++..+. +. .+.+..+. ....+...|..++++.+..+.
T Consensus 181 ~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~---------------~l~~l~~~~~~l~~~~~~~L~ 245 (305)
T TIGR00635 181 PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK---------------ALEMLMIDELGLDEIDRKLLS 245 (305)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH---------------HHHHhCCCCCCCCHHHHHHHH
Confidence 34567899999999976655544321 00 01111111 222245677888888777665
Q ss_pred -hhccCCCCeeeChHHHHHHH-HHhCcHHHHHH-HHHhcCCce
Q 044935 183 -YCAVFPKDREIWKYELIKLW-MAQGYLNEYFN-ILASSSFFQ 222 (683)
Q Consensus 183 -~~a~fp~~~~~~~~~li~~w-~~~g~~~~~l~-~L~~~~ll~ 222 (683)
..+.+..+ .+...++.... +........++ .|++++++.
T Consensus 246 al~~~~~~~-~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 246 VLIEQFQGG-PVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHhCCC-cccHHHHHHHhCCCcchHHHhhhHHHHHcCCcc
Confidence 44555433 44444433322 11112225567 699999995
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=80.94 E-value=0.051 Score=57.89 Aligned_cols=111 Identities=21% Similarity=0.173 Sum_probs=59.9
Q ss_pred ccEEEEeCCCCccc-cccchhhhcCCCceeEEEecccCCcccCcccccccccCC-CCCcEEeecCCCCcc-----ccchH
Q 044935 301 LRSLSVEGGEYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNL-LHLKYLSLFGESEIK-----RLPEV 373 (683)
Q Consensus 301 L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l-~~L~~L~L~~~~~~~-----~lp~~ 373 (683)
+..|.+.+|.+... ...+-..+.....|..|++++|.+.+.....+-..+... ..|++|++..|. +. .+++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHH
Confidence 56666666654221 122344556667777788877665543333333333333 456667776665 33 24445
Q ss_pred HhcccCCcEEeccCccchh----hcccccc----cccccceEecCCC
Q 044935 374 LCELYNLERLDVRFCVNLR----ELLQGIG----KLRKLMYLDNEGT 412 (683)
Q Consensus 374 i~~L~~L~~L~L~~~~~l~----~lp~~i~----~l~~L~~L~l~~~ 412 (683)
+.....|+.++++.|.... .++..+. ...++++|++.+|
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~ 214 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC 214 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc
Confidence 5566677777777665321 1122222 3556666666666
No 91
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.87 E-value=3 Score=35.67 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHcCCce-EEEEEEcCCCC-CccChHhHHHhhhCCCCCcEEEEEecC
Q 044935 8 EARAIIEALKPGSTKDLVEFQSLMQHIQECVEGEK-FLLVLDDLWNK-DYYKWEPFYNCLKNGLHGSKILITTRN 80 (683)
Q Consensus 8 l~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlvLDdv~~~-~~~~~~~l~~~~~~~~~gs~iivTTr~ 80 (683)
+.++|++++. .......+.+++.+.+.+.+...+ .+||+||+..- +...++.+.. +.+ ..+.+||+..+.
T Consensus 54 ~~~~i~~~l~-~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 54 FAQEILEALG-LPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHT--SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHHHHHhC-ccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 7888999998 554445677777788888887554 59999999554 3333444433 333 667788887765
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.72 E-value=0.8 Score=26.48 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=13.0
Q ss_pred CCCCceEEEeCCcchHHHh
Q 044935 645 KTTLQRLEIYGCPILEERC 663 (683)
Q Consensus 645 l~~L~~L~l~~c~~l~~~~ 663 (683)
+++|+.|++++|+.+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 3667777777777766653
No 93
>PF05729 NACHT: NACHT domain
Probab=75.31 E-value=4 Score=36.45 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred CCceEEEEEEcCCCCCcc-------ChHhHH-HhhhC-CCCCcEEEEEecCchh
Q 044935 39 EGEKFLLVLDDLWNKDYY-------KWEPFY-NCLKN-GLHGSKILITTRNETT 83 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~-------~~~~l~-~~~~~-~~~gs~iivTTr~~~v 83 (683)
..+++++|+|++.+-... .+..+. ..+.. ...+.+++||||....
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 589999999999543321 122222 22332 3578999999998755
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.19 E-value=0.082 Score=56.31 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=89.5
Q ss_pred eEEEEEEecCCCCc-ccccchhhhccCCccEEEEeCCCCcccc-ccchhhhcCC-CceeEEEecccCCcccCcccccccc
Q 044935 274 VLHLMLTIDEGTSV-PISIWNNVKRMRRLRSLSVEGGEYSWSS-KVLPQLFDKL-TCLRAITLETYGWDYNPIKEIPTNI 350 (683)
Q Consensus 274 ~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~lp~~i 350 (683)
+.++.+..+.+... ...+...++....|..|++++|.+.... ..+-..+... ..|++|.+..|.++......+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777766542 3334455666888999999999874211 1112223332 5678888888887766677788888
Q ss_pred cCCCCCcEEeecCCCCcc----ccchHHh----cccCCcEEeccCccchh----hcccccccccc-cceEecCCCc
Q 044935 351 KNLLHLKYLSLFGESEIK----RLPEVLC----ELYNLERLDVRFCVNLR----ELLQGIGKLRK-LMYLDNEGTN 413 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~----~lp~~i~----~L~~L~~L~L~~~~~l~----~lp~~i~~l~~-L~~L~l~~~~ 413 (683)
....+|+.++++.|.... .++..+. ...++++|.+++|.... .+-..+...+. +..|++..|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 888999999999998432 1233333 47889999999887321 11222344444 5557776663
No 95
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.59 E-value=35 Score=34.78 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhh-hhccCCCC
Q 044935 112 KIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFS-YCAVFPKD 190 (683)
Q Consensus 112 ~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-~~a~fp~~ 190 (683)
+.+..|++.|+|.|-.+..+...+. .|........ -....-......+...|..|++..+..+. ....|..+
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~-I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGV-ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCC-CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 4578899999999965444443321 1111100000 00000122334456677888887777775 55566554
Q ss_pred eeeChHHHHHHH-HHhCcHHHHHH-HHHhcCCcee
Q 044935 191 REIWKYELIKLW-MAQGYLNEYFN-ILASSSFFQE 223 (683)
Q Consensus 191 ~~~~~~~li~~w-~~~g~~~~~l~-~L~~~~ll~~ 223 (683)
.+..+.+.... .....+...++ .|++.+|+..
T Consensus 276 -~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 276 -PVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred -ceeHHHHHHHHCCCcchHHHHhhHHHHHcCCccc
Confidence 34444443322 11112234566 8999999963
No 96
>PRK06893 DNA replication initiation factor; Validated
Probab=71.24 E-value=7.4 Score=37.30 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCC-ccChHh-HHHhhhCC-CCCcEEEEEecCc
Q 044935 42 KFLLVLDDLWNKD-YYKWEP-FYNCLKNG-LHGSKILITTRNE 81 (683)
Q Consensus 42 r~LlvLDdv~~~~-~~~~~~-l~~~~~~~-~~gs~iivTTr~~ 81 (683)
.-+||+||+|... ..+|+. +...+... ..|+.+||+|.+.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3589999998643 234553 33333322 2466676666544
No 97
>COG3903 Predicted ATPase [General function prediction only]
Probab=69.77 E-value=5.9 Score=40.53 Aligned_cols=189 Identities=21% Similarity=0.183 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhhhc---------cCCcchHHHH--H
Q 044935 29 SLMQHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTAHN---------MGSTNIIQLM--F 97 (683)
Q Consensus 29 ~~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~~---------~~~~~~~~ll--~ 97 (683)
.....+..+..++|.++|+||--+. ..+-..+..++..+...-.|+.|+|+...... ...+..+++| .
T Consensus 76 ~~~~~~~~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 76 SAVDTLVRRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred HHHHHHHHHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHH
Confidence 3445666777889999999997321 12333445556666667788889887533211 1123344453 1
Q ss_pred Hhh-cCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhhhhccc-------cccccchHHHHHh
Q 044935 98 SFL-GKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESEIWEHE-------VVKKGLLAPLLLS 169 (683)
Q Consensus 98 ~~~-~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~~~~~~-------~~~~~~~~~l~~s 169 (683)
+.. .....-...-...+..|.+.-+|.|++|...++..+.- ...+--..++....... .-++..+..+..|
T Consensus 155 a~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 155 AVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 110 00101112234567889999999999999999988766 33333333332111111 1235678889999
Q ss_pred hcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHHhCcH---H-----HHHHHHHhcCCcee
Q 044935 170 YNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMAQGYL---N-----EYFNILASSSFFQE 223 (683)
Q Consensus 170 y~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~---~-----~~l~~L~~~~ll~~ 223 (683)
|.-|....+--|--++.|...+... ...|.+.|-. + ..+..++++++...
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhh
Confidence 9999988888888888887666543 2233333332 1 44556788888754
No 98
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=65.26 E-value=1.7e+02 Score=30.13 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=29.6
Q ss_pred cHHHHHHHHHcCC--CC-CCCchhHHHHHHHHHHHcC--CceEEEEEEcCCCC
Q 044935 6 FIEARAIIEALKP--GS-TKDLVEFQSLMQHIQECVE--GEKFLLVLDDLWNK 53 (683)
Q Consensus 6 ~~l~~~il~~~~~--~~-~~~~~~~~~~~~~l~~~l~--~kr~LlvLDdv~~~ 53 (683)
+++.++|++++.. .. .....+.++..+.+.+.+. +++++||||+++.-
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 3477888888841 11 1122344555566666663 66889999999654
No 99
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.66 E-value=4.3 Score=23.47 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=10.0
Q ss_pred CCcEEeecCCCCccccch
Q 044935 355 HLKYLSLFGESEIKRLPE 372 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~ 372 (683)
+|++|++++|. +..+|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 45566666665 555554
No 100
>COG3899 Predicted ATPase [General function prediction only]
Probab=62.45 E-value=39 Score=39.44 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=85.5
Q ss_pred CCceEEEEEEcCCCCCccChHhHHHhhhCCC----CCcEEEEEecCchhhhcc----CCcchHHH-----------HHHh
Q 044935 39 EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGL----HGSKILITTRNETTAHNM----GSTNIIQL-----------MFSF 99 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~----~gs~iivTTr~~~v~~~~----~~~~~~~l-----------l~~~ 99 (683)
+.|+..+|+||+...+....+-+........ ....|..+.......... ..-..+.| +..-
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3569999999996676666655554443322 112333333322221110 00011111 1111
Q ss_pred hcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCC------CCHHHHHHHHHhhhhccccccccchHHHHHhhcCC
Q 044935 100 LGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSK------NNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNEL 173 (683)
Q Consensus 100 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L 173 (683)
... ......+....|+++..|.|+-+.-+-..+... .+...|..=..... ... .-+.+.+.+..-.+.|
T Consensus 232 l~~---~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-~~~-~~~~vv~~l~~rl~kL 306 (849)
T COG3899 232 LGC---TKLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-ILA-TTDAVVEFLAARLQKL 306 (849)
T ss_pred hCC---cccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-Cch-hhHHHHHHHHHHHhcC
Confidence 111 123345677889999999999998887777653 23333432211100 011 1122455677788999
Q ss_pred ChhhHHHhhhhccCCCCeeeChHHHHHHH
Q 044935 174 PSKVKHYFSYCAVFPKDREIWKYELIKLW 202 (683)
Q Consensus 174 ~~~~k~~fl~~a~fp~~~~~~~~~li~~w 202 (683)
|...|...-..||+...+. ...|...+
T Consensus 307 ~~~t~~Vl~~AA~iG~~F~--l~~La~l~ 333 (849)
T COG3899 307 PGTTREVLKAAACIGNRFD--LDTLAALA 333 (849)
T ss_pred CHHHHHHHHHHHHhCccCC--HHHHHHHH
Confidence 9999999999999987665 34444433
No 101
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.96 E-value=3.5 Score=23.14 Aligned_cols=11 Identities=45% Similarity=0.459 Sum_probs=3.9
Q ss_pred CCcEEeccCcc
Q 044935 379 NLERLDVRFCV 389 (683)
Q Consensus 379 ~L~~L~L~~~~ 389 (683)
+|++|+|++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444443
No 102
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=59.75 E-value=1e+02 Score=35.11 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=33.7
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
++.-++|||++..-+...|+.+...+.+-....++|++|++.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 4555788999976655668888888888778899999888753
No 103
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=59.18 E-value=63 Score=33.44 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=34.2
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
+++.++|+||+...+....+.+...+..-..++.+|++|.+.+
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 5677899999977777778888888887777888888887653
No 104
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=56.76 E-value=67 Score=32.45 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 39 EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
.+++=++|+||+..-+...++.+...+.+-..++.+|++|.+.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 35555677777755555678999999998889999999997653
No 105
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=53.69 E-value=22 Score=31.65 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHHcCC-ceEEEEEEcCCCC---CccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 30 LMQHIQECVEG-EKFLLVLDDLWNK---DYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 30 ~~~~l~~~l~~-kr~LlvLDdv~~~---~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.-+..++.+.. +-=|||||++-.. .....+.+...+.....+.-||+|.|+.
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 44445555554 5569999999322 2346777888888888888999999985
No 106
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.68 E-value=12 Score=21.67 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=5.7
Q ss_pred CCCcEEeecCCC
Q 044935 354 LHLKYLSLFGES 365 (683)
Q Consensus 354 ~~L~~L~L~~~~ 365 (683)
.+|+.|+++.|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 344445554444
No 107
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.18 E-value=2.1e+02 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.349 Sum_probs=27.4
Q ss_pred HHHHHHHHHHc-CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEE
Q 044935 28 QSLMQHIQECV-EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILI 76 (683)
Q Consensus 28 ~~~~~~l~~~l-~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iiv 76 (683)
.++.+...... .+++.+|++|+++.-+..+.+.+...+.. |..+++
T Consensus 78 r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 78 REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 33444433322 45788999999986655556666555543 555555
No 108
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=48.28 E-value=31 Score=29.52 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=28.7
Q ss_pred cCCceEEEEEEcCCCCCccChHhHHHhhhCC------CCCcEEEEEecCch
Q 044935 38 VEGEKFLLVLDDLWNKDYYKWEPFYNCLKNG------LHGSKILITTRNET 82 (683)
Q Consensus 38 l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~------~~gs~iivTTr~~~ 82 (683)
...++.++|+||++.........+...+... ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3467899999999753222333444444443 36788988887654
No 109
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=44.87 E-value=21 Score=33.87 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=31.0
Q ss_pred CceEEEEEEcCCCCC-ccChHhHHHhhhCCCCCcEEEEEecCchhhhcc
Q 044935 40 GEKFLLVLDDLWNKD-YYKWEPFYNCLKNGLHGSKILITTRNETTAHNM 87 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~-~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~~~ 87 (683)
+.-=++|||||...- ......+...+....+++.+||||.+..++...
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344578999994321 235666777777777789999999998877654
No 110
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=44.35 E-value=1.4e+02 Score=32.36 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEec
Q 044935 39 EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTR 79 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr 79 (683)
.+++-++|+|+++.-+...|+.+...+.+....+++|++|.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 36777899999987666678889888887777777776664
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=43.68 E-value=73 Score=31.61 Aligned_cols=39 Identities=5% Similarity=0.056 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 43 FLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 43 ~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
-.||||+...-....|..+...+.+...-+|.|+.|..-
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 457899998777788999999999888888888877654
No 112
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=43.00 E-value=52 Score=30.19 Aligned_cols=42 Identities=7% Similarity=0.122 Sum_probs=32.1
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++-+||+||+..-+...++.+...+.+..+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 566789999996655556778888888777788888888654
No 113
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.79 E-value=13 Score=39.66 Aligned_cols=37 Identities=27% Similarity=0.110 Sum_probs=17.0
Q ss_pred CCCCCcEEeecCCCC-ccccchHHhcc--cCCcEEeccCcc
Q 044935 352 NLLHLKYLSLFGESE-IKRLPEVLCEL--YNLERLDVRFCV 389 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~-~~~lp~~i~~L--~~L~~L~L~~~~ 389 (683)
..++|+.|+|++|.. +...+ ++.++ ..|++|-+.||.
T Consensus 242 ~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred hcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCc
Confidence 345556666665521 22222 13332 335566666655
No 114
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=42.01 E-value=1e+02 Score=29.07 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCchHHHHH
Q 044935 111 EKIGREIVGKCKGLPLAVKT 130 (683)
Q Consensus 111 ~~~~~~i~~~c~glPlal~~ 130 (683)
.+..++|...+||.|..|.-
T Consensus 214 ~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 214 DEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHhc
Confidence 34458899999999987753
No 115
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=40.88 E-value=2.3e+02 Score=29.11 Aligned_cols=89 Identities=7% Similarity=0.059 Sum_probs=51.5
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch-hh----hccCC--------cchHHHHHHhhcCCCCC
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET-TA----HNMGS--------TNIIQLMFSFLGKSMEG 106 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~-v~----~~~~~--------~~~~~ll~~~~~~~~~~ 106 (683)
+++-++|+|++..-+....+.+...+.+-..+..+|++|.... +. .+|.. ......+...+...
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---
Confidence 5677899999977666667888888877666777666665432 21 11211 01111122211111
Q ss_pred cchHHHHHHHHHHHcCCchHHHHHHH
Q 044935 107 RENLEKIGREIVGKCKGLPLAVKTIG 132 (683)
Q Consensus 107 ~~~~~~~~~~i~~~c~glPlal~~~~ 132 (683)
. --.+.+..+++.++|.|.....+.
T Consensus 217 ~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 113446778999999998665443
No 116
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=40.10 E-value=49 Score=30.43 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCC-ceEEEEEEcCC---CCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 28 QSLMQHIQECVEG-EKFLLVLDDLW---NKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 28 ~~~~~~l~~~l~~-kr~LlvLDdv~---~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.+.-+..++.+.+ +-=+||||.+- +......+.+...+.....+.-||+|=|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3445556666654 55699999992 222345778888888878888999999976
No 117
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.76 E-value=20 Score=21.05 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=6.1
Q ss_pred CCcEEeecCCC
Q 044935 355 HLKYLSLFGES 365 (683)
Q Consensus 355 ~L~~L~L~~~~ 365 (683)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45555555555
No 118
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=38.46 E-value=65 Score=29.14 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCC-ceEEEEEEcCC---CCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 27 FQSLMQHIQECVEG-EKFLLVLDDLW---NKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 27 ~~~~~~~l~~~l~~-kr~LlvLDdv~---~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
..+.-+..++.+.+ +==|||||.+- +......+.+...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34455556666654 44599999992 222345667888888878888999999976
No 119
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=38.25 E-value=67 Score=29.04 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcC-CceEEEEEEcC---CCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 27 FQSLMQHIQECVE-GEKFLLVLDDL---WNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 27 ~~~~~~~l~~~l~-~kr~LlvLDdv---~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
..+.-+..++.+. ++-=|||||.| .+......+.+...+.......-||+|=|+..
T Consensus 81 ~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 81 AREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 3455566777776 45559999998 22233467788888888888999999999863
No 120
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=37.15 E-value=83 Score=28.57 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcC-CceEEEEEEcCC---CCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 28 QSLMQHIQECVE-GEKFLLVLDDLW---NKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 28 ~~~~~~l~~~l~-~kr~LlvLDdv~---~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.+.-+..++.+. ++--|||||.+- +...-+.+.+...+.....+.-||+|=|+.
T Consensus 101 ~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 101 QELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 334455666665 456699999992 222346777888888888888999999975
No 121
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.05 E-value=2.3e+02 Score=31.78 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 39 EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.+++-++|+|++..-+...++.+...+.+-..+.++|++|.+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 4566789999997666667888888887777778877777654
No 122
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=4.9e+02 Score=26.99 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHcC--CceEEEEEEcCC
Q 044935 4 EPFIEARAIIEALKPGSTKDLVEFQSLMQHIQECVE--GEKFLLVLDDLW 51 (683)
Q Consensus 4 ~~~~l~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvLDdv~ 51 (683)
+.|.+..+|++++. .-........+..+.+.+.+. ++.+.||||++.
T Consensus 85 t~~~i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid 133 (366)
T COG1474 85 TPYQVLSKILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVD 133 (366)
T ss_pred CHHHHHHHHHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 44558889999887 555555666777777777775 689999999994
No 123
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=35.16 E-value=98 Score=28.31 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHcCCceE-EEEEEcCC---CCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 26 EFQSLMQHIQECVEGEKF-LLVLDDLW---NKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 26 ~~~~~~~~l~~~l~~kr~-LlvLDdv~---~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.....-+..++.+.+.+| |||||.+- +-....++++...+.......-||+|-|..
T Consensus 106 aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 106 AAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 445555666777776554 88999981 112346888999998888899999999875
No 124
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=34.51 E-value=2.5e+02 Score=29.47 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=31.3
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++-++|+|++..-+....+.+...+.+...+..+|++|.+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 455578889997666556677888887777788888888764
No 125
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=33.78 E-value=2.8e+02 Score=28.18 Aligned_cols=43 Identities=7% Similarity=0.165 Sum_probs=32.1
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
+++-.+|+|++..-+....+.+...+.+-..++.+|+||.+.+
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 3444456799976666678888888888777888888887753
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=33.54 E-value=55 Score=36.61 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEE--EecCc
Q 044935 29 SLMQHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILI--TTRNE 81 (683)
Q Consensus 29 ~~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iiv--TTr~~ 81 (683)
..+..+.+.+++++++++-|+.|..+...|+.+...+....+...|++ ||++.
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc
Confidence 357788999999999999888887766778888777776666665666 55543
No 127
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=33.37 E-value=62 Score=28.91 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=35.4
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
+++=.+|+||+..-+...+..+...+.+-..++++|++|++..
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 4677889999987777788999999999999999999998764
No 128
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=32.32 E-value=1.7e+02 Score=24.36 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHcCCc-eEEEEEEcCCCCCccC-----------hHhHHHhhhCCCC---CcEEEEEecCc
Q 044935 25 VEFQSLMQHIQECVEGE-KFLLVLDDLWNKDYYK-----------WEPFYNCLKNGLH---GSKILITTRNE 81 (683)
Q Consensus 25 ~~~~~~~~~l~~~l~~k-r~LlvLDdv~~~~~~~-----------~~~l~~~~~~~~~---gs~iivTTr~~ 81 (683)
.....+.+.+.+.-..+ +.+|++||+..-.... ...+...+..... +..||.||...
T Consensus 41 ~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 41 DSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp HHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ccccccccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 34444555555543344 8999999995433333 3445555544433 35677777653
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=31.57 E-value=1.3e+02 Score=28.88 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCC--------CCCchhHHHHHHHHHHHcCCceEEEEEEcCC-CCCccChHhHHHhhhCC---C-CCcEE
Q 044935 8 EARAIIEALKPGS--------TKDLVEFQSLMQHIQECVEGEKFLLVLDDLW-NKDYYKWEPFYNCLKNG---L-HGSKI 74 (683)
Q Consensus 8 l~~~il~~~~~~~--------~~~~~~~~~~~~~l~~~l~~kr~LlvLDdv~-~~~~~~~~~l~~~~~~~---~-~gs~i 74 (683)
+++.++.... .. ..+..+..++.+.++. +..||.|.+||+. +....++..+++.+..+ . ..-.|
T Consensus 68 lVkall~~y~-~~GLRlIev~k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 68 LVKALLNEYA-DQGLRLIEVSKEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred HHHHHHHHHh-hcCceEEEECHHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEE
Confidence 6777777766 32 2334555666666663 4679999999993 33334567777666533 2 23345
Q ss_pred EEEecCchhhh
Q 044935 75 LITTRNETTAH 85 (683)
Q Consensus 75 ivTTr~~~v~~ 85 (683)
.+||--+|+..
T Consensus 145 yATSNRRHLv~ 155 (249)
T PF05673_consen 145 YATSNRRHLVP 155 (249)
T ss_pred EEecchhhccc
Confidence 55555455543
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.49 E-value=3.5e+02 Score=29.50 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=30.7
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecC
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRN 80 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~ 80 (683)
+++-+||+|+++..+...++.+...+.+......+|++|..
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 56778999999766556688888888776667777766654
No 131
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.23 E-value=21 Score=38.03 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=49.9
Q ss_pred cCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeee--cCCCCccCcchHh--hccccceEe
Q 044935 464 QKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEY--RGRRNVVPINWIM--SLTNLRDLY 539 (683)
Q Consensus 464 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~--~l~~L~~L~ 539 (683)
+.+.+..++++.|.+.. +..+...-...|+|..|+|++| .... ..++. ....|++|.
T Consensus 216 n~p~i~sl~lsnNrL~~---------------Ld~~sslsq~apklk~L~LS~N~~~~~~----~~el~K~k~l~Leel~ 276 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH---------------LDALSSLSQIAPKLKTLDLSHNHSKISS----ESELDKLKGLPLEELV 276 (585)
T ss_pred CCcceeeeecccchhhc---------------hhhhhHHHHhcchhheeecccchhhhcc----hhhhhhhcCCCHHHee
Confidence 45667777888877432 2233333445678889999888 3322 22333 445678888
Q ss_pred ecCCCCCCCCCC--------CCCCCCcceEEe
Q 044935 540 LSYCRNCEHLPP--------LGKLPSLEDLHI 563 (683)
Q Consensus 540 l~~~~~~~~~~~--------l~~l~~L~~L~L 563 (683)
+.+|+..+.+.. ...+|+|..|+=
T Consensus 277 l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 277 LEGNPLCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred ecCCccccchhhhHHHHHHHHHhcchheeecC
Confidence 888887776543 225777776653
No 132
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=29.19 E-value=3.5e+02 Score=27.70 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=28.9
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++-+||+|++..-+....+.+...+.+......+|++|.+.
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 455688999985444345677777776666677777777544
No 133
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=28.50 E-value=1.3e+02 Score=28.48 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCCcc-Ch-HhHHHhhhCC-CCCcEEEEEecCc
Q 044935 43 FLLVLDDLWNKDYY-KW-EPFYNCLKNG-LHGSKILITTRNE 81 (683)
Q Consensus 43 ~LlvLDdv~~~~~~-~~-~~l~~~~~~~-~~gs~iivTTr~~ 81 (683)
-+||+||+..-... +| +.+...+... ..+.++|+||+..
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 38999999644322 22 3344433321 2345788888753
No 134
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=27.73 E-value=1.1e+02 Score=22.27 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHhhhcCCCC
Q 044935 110 LEKIGREIVGKCKGLPLAVKTIGSLLRSKNN 140 (683)
Q Consensus 110 ~~~~~~~i~~~c~glPlal~~~~~~L~~~~~ 140 (683)
+..+.-.|++.|+|++--+.++-++|+.+++
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 3456677999999999999999999998853
No 135
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.96 E-value=2.6e+02 Score=28.93 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=31.5
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++-++|+|++..-+...++.+...+.+.....++|++|.+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 456689999996555446778888888777788888887653
No 136
>PRK09087 hypothetical protein; Validated
Probab=25.96 E-value=2.3e+02 Score=27.02 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCccChHhHHHhhhC-CCCCcEEEEEecC
Q 044935 43 FLLVLDDLWNKDYYKWEPFYNCLKN-GLHGSKILITTRN 80 (683)
Q Consensus 43 ~LlvLDdv~~~~~~~~~~l~~~~~~-~~~gs~iivTTr~ 80 (683)
-+|++||+.... ..-+.+...+.. ...|..||+|++.
T Consensus 89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCC
Confidence 378889995321 111223333321 1246779998874
No 137
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=23.30 E-value=3.1e+02 Score=25.54 Aligned_cols=78 Identities=9% Similarity=0.080 Sum_probs=48.0
Q ss_pred CcccH-HHHHHHHHcCCCC----CCCchhHHHHH---HHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEE
Q 044935 3 GEPFI-EARAIIEALKPGS----TKDLVEFQSLM---QHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKI 74 (683)
Q Consensus 3 s~~~~-l~~~il~~~~~~~----~~~~~~~~~~~---~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~i 74 (683)
+.+|. ...++.+..++.. .++...+++.. +.+.-.-..+|+ |+|++..-+...++.+...+.+-..+..+
T Consensus 10 t~d~e~~~~~l~~~~~~~~~~~f~~~~i~Vd~iReii~~~~~~~~~~k~--iI~~a~~l~~~A~NaLLK~LEEPp~~~~f 87 (206)
T PRK08485 10 TSDFEESKEELINEFGKKNLRFFIKEEFKIEDAKEVIAEAYIAESEEKI--IVIAAPSYGIEAQNALLKILEEPPKNICF 87 (206)
T ss_pred eCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHhhCCCCcEE--EEEchHhhCHHHHHHHHHHhcCCCCCeEE
Confidence 45666 6677777776322 12233444443 333333234554 56788655556788888888888888888
Q ss_pred EEEecCch
Q 044935 75 LITTRNET 82 (683)
Q Consensus 75 ivTTr~~~ 82 (683)
|++|.+..
T Consensus 88 iL~t~~~~ 95 (206)
T PRK08485 88 IIVAKSKN 95 (206)
T ss_pred EEEeCChH
Confidence 88887653
No 138
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=22.73 E-value=1.1e+03 Score=27.85 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHcC---CceEEEEEEcCC
Q 044935 8 EARAIIEALKPGSTKDLVEFQSLMQHIQECVE---GEKFLLVLDDLW 51 (683)
Q Consensus 8 l~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlvLDdv~ 51 (683)
+.+.|.+++............+..+.+.+.+. ....+||||+|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence 67777788852333333344455556665552 234589999995
No 139
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=22.34 E-value=63 Score=30.20 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchh
Q 044935 42 KFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETT 83 (683)
Q Consensus 42 r~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v 83 (683)
.-+||+|+..+-+..++..+. -.-+.|||||++=-..++
T Consensus 120 ~~~iIvDEaQN~t~~~~k~il---TR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMIL---TRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHH---TTB-TT-EEEEEE-----
T ss_pred ceEEEEecccCCCHHHHHHHH---cccCCCcEEEEecCceee
Confidence 468999999887766665554 445689999998765544
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.02 E-value=5.3e+02 Score=28.77 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=29.6
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecC
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRN 80 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~ 80 (683)
+++-+||+|++..-+....+.+...+.+......+|++|.+
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 56778999999654445577777777776667777777754
No 141
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=21.14 E-value=2.1e+02 Score=30.02 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=33.4
Q ss_pred ceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchh
Q 044935 41 EKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETT 83 (683)
Q Consensus 41 kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v 83 (683)
++..|+||.|.. ..+|+.....+.+.++. +|++|+-+...
T Consensus 94 ~~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~l 133 (398)
T COG1373 94 EKSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSL 133 (398)
T ss_pred CCceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhh
Confidence 778999999954 57899999999988877 89999876544
No 142
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.97 E-value=1.6e+02 Score=34.00 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=56.7
Q ss_pred CceEEEEEEcCCCCCc-cChHhHHHhh-hC-CCCCcEEEEEecCchhhhccCCcchH---HH------H-HHhhcCCCCC
Q 044935 40 GEKFLLVLDDLWNKDY-YKWEPFYNCL-KN-GLHGSKILITTRNETTAHNMGSTNII---QL------M-FSFLGKSMEG 106 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~-~~~~~l~~~~-~~-~~~gs~iivTTr~~~v~~~~~~~~~~---~l------l-~~~~~~~~~~ 106 (683)
.++-||++|.+-.... .+-..+..++ .. ...|+.+|+||.+..+.........+ .+ + ..|......+
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~G~~ 480 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLKGIP 480 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECCCCC
Confidence 4789999999954321 2222332221 11 13588999999988764322111111 01 1 1111111111
Q ss_pred cchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHh
Q 044935 107 RENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILES 150 (683)
Q Consensus 107 ~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~ 150 (683)
. ...|-.|++++ |+|-.++--|..+.+. ....+.++++.
T Consensus 481 g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~ 519 (771)
T TIGR01069 481 G---ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEK 519 (771)
T ss_pred C---CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 1 23566777766 8999999999988655 34445554443
No 143
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.91 E-value=2.3e+02 Score=32.03 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=30.3
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++-++|+|++..-+....+.+...+.+-....++|++|.+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 566789999996544445666777777666778888888654
No 144
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.84 E-value=2.1e+02 Score=31.42 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHHHHHHHH-cCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 28 QSLMQHIQEC-VEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 28 ~~~~~~l~~~-l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.++.+.+... ..+++-++|+|++..-+...++.+...+.+.....++|++|.+.
T Consensus 105 r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 105 KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 3444444322 23567799999996666567888888888877788888777543
No 145
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=20.44 E-value=7.9e+02 Score=24.89 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=51.7
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch-hh----hccCCc-----chHHHHHHhhcCCCCCcch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET-TA----HNMGST-----NIIQLMFSFLGKSMEGREN 109 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~-v~----~~~~~~-----~~~~ll~~~~~~~~~~~~~ 109 (683)
+++=.+|+|++..-+....+.+...+.+-..++.+|++|.+.+ +. .+|..- ..-.+..........
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---- 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---- 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc----
Confidence 4555788899976666678889988988888898888887653 22 222211 111112222211111
Q ss_pred HHHHHHHHHHHcCCchHHHHHH
Q 044935 110 LEKIGREIVGKCKGLPLAVKTI 131 (683)
Q Consensus 110 ~~~~~~~i~~~c~glPlal~~~ 131 (683)
.+..++..++|-|+....+
T Consensus 183 ---~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 ---VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ---hHHHHHHHcCCCHHHHHHH
Confidence 1356789999999866544
No 146
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=20.14 E-value=8.3e+02 Score=24.71 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=51.8
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch-hh----hccCCc-----chHHHHHHhhcCCCCCcch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET-TA----HNMGST-----NIIQLMFSFLGKSMEGREN 109 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~-v~----~~~~~~-----~~~~ll~~~~~~~~~~~~~ 109 (683)
+++=++|+|++..-+...-+.+...+.+-..++.+|++|...+ +. .+|..- ..-++........ . +
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-~-~-- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-V-S-- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-C-C--
Confidence 5667889999966555567778888888778888888887543 22 122111 1111121211111 1 1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHH
Q 044935 110 LEKIGREIVGKCKGLPLAVKTIG 132 (683)
Q Consensus 110 ~~~~~~~i~~~c~glPlal~~~~ 132 (683)
...+..++..++|-|+....+.
T Consensus 188 -~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 -ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -hHHHHHHHHHcCCCHHHHHHHh
Confidence 2236678999999998655443
Done!