Query 044935
Match_columns 683
No_of_seqs 378 out of 3479
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.7E-29 6E-34 275.3 12.6 226 8-254 203-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 3.6E-29 1.2E-33 285.3 12.5 376 272-681 269-766 (768)
3 4eco_A Uncharacterized protein 99.9 3.4E-27 1.2E-31 262.8 18.0 334 272-658 206-599 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 9.3E-27 3.2E-31 263.4 17.0 337 271-658 447-839 (876)
5 3rgz_A Protein brassinosteroid 99.9 1.5E-26 5E-31 263.8 16.8 361 272-657 200-691 (768)
6 4eco_A Uncharacterized protein 99.9 2.3E-26 7.8E-31 256.1 15.8 308 318-658 198-578 (636)
7 4ecn_A Leucine-rich repeat pro 99.9 3.5E-26 1.2E-30 258.7 16.9 313 318-658 440-818 (876)
8 3v47_A TOLL-like receptor 5B a 99.9 6.6E-26 2.3E-30 243.3 17.3 344 272-657 30-406 (455)
9 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-26 5E-31 257.9 12.2 133 272-416 32-167 (606)
10 4fmz_A Internalin; leucine ric 99.9 1.9E-24 6.5E-29 223.1 20.3 301 272-657 44-344 (347)
11 2z63_A TOLL-like receptor 4, v 99.9 4.2E-25 1.4E-29 244.3 15.3 144 272-428 28-175 (570)
12 2id5_A Lingo-1, leucine rich r 99.9 1.9E-24 6.5E-29 233.2 19.7 313 276-658 15-332 (477)
13 3t6q_A CD180 antigen; protein- 99.9 7.1E-25 2.4E-29 244.2 16.2 348 272-658 33-461 (606)
14 3vq2_A TLR4, TOLL-like recepto 99.9 9.1E-25 3.1E-29 243.4 16.3 138 276-429 15-156 (606)
15 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-24 4.5E-29 239.1 16.9 362 272-657 26-508 (549)
16 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-24 1.7E-28 232.7 19.6 342 272-658 21-480 (520)
17 3t6q_A CD180 antigen; protein- 99.9 2.7E-24 9.2E-29 239.6 17.0 272 350-657 274-558 (606)
18 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-23 4.4E-28 242.0 21.7 265 272-566 24-372 (844)
19 1ziw_A TOLL-like receptor 3; i 99.9 4.4E-24 1.5E-28 241.2 17.5 132 272-415 25-158 (680)
20 3o6n_A APL1; leucine-rich repe 99.9 2.4E-23 8.3E-28 218.3 20.2 303 272-658 45-351 (390)
21 1o6v_A Internalin A; bacterial 99.9 5.1E-23 1.7E-27 221.0 22.7 311 272-657 46-386 (466)
22 4fcg_A Uncharacterized protein 99.9 5.9E-24 2E-28 216.5 14.1 231 325-656 80-311 (328)
23 3v47_A TOLL-like receptor 5B a 99.9 2.1E-23 7.2E-28 223.8 18.8 334 277-657 15-382 (455)
24 2z7x_B TOLL-like receptor 1, v 99.9 5.9E-24 2E-28 232.2 14.4 133 275-428 3-138 (520)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-23 6.1E-28 230.3 17.3 351 272-657 52-508 (562)
26 1o6v_A Internalin A; bacterial 99.9 1E-22 3.6E-27 218.6 22.1 295 272-640 68-392 (466)
27 4fmz_A Internalin; leucine ric 99.9 8.3E-23 2.8E-27 210.8 19.9 282 270-634 64-345 (347)
28 3oja_B Anopheles plasmodium-re 99.9 5.6E-23 1.9E-27 227.5 19.8 304 272-658 51-357 (597)
29 2id5_A Lingo-1, leucine rich r 99.9 2.9E-23 1E-27 223.9 16.2 299 272-635 32-333 (477)
30 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-23 1.8E-27 230.6 17.4 352 272-657 52-578 (635)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.6E-22 1.9E-26 218.3 24.8 344 274-657 33-484 (562)
32 3sfz_A APAF-1, apoptotic pepti 99.9 4.6E-23 1.6E-27 249.4 16.5 228 8-252 198-452 (1249)
33 3bz5_A Internalin-J, INLJ; leu 99.9 6.4E-22 2.2E-26 210.6 22.7 304 272-657 42-350 (457)
34 2z63_A TOLL-like receptor 4, v 99.9 4.2E-23 1.4E-27 228.3 13.4 136 280-431 15-154 (570)
35 3o6n_A APL1; leucine-rich repe 99.9 1.4E-22 4.9E-27 212.4 16.2 282 272-635 69-352 (390)
36 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-23 8.2E-28 210.8 9.5 119 299-422 50-169 (313)
37 1ziw_A TOLL-like receptor 3; i 99.9 4.1E-22 1.4E-26 225.0 20.6 334 276-656 8-363 (680)
38 3j0a_A TOLL-like receptor 5; m 99.9 8.4E-22 2.9E-26 226.9 23.1 338 276-657 8-392 (844)
39 2z81_A CD282 antigen, TOLL-lik 99.9 1.8E-22 6E-27 222.1 16.4 183 279-481 12-211 (549)
40 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-22 1.6E-26 211.8 18.6 279 296-657 39-329 (457)
41 2ft3_A Biglycan; proteoglycan, 99.9 9.4E-23 3.2E-27 208.7 12.7 124 273-414 34-159 (332)
42 4fcg_A Uncharacterized protein 99.9 5E-22 1.7E-26 202.3 16.5 202 298-570 80-291 (328)
43 1vt4_I APAF-1 related killer D 99.9 1.1E-22 3.7E-27 224.4 12.2 187 26-245 226-436 (1221)
44 1xku_A Decorin; proteoglycan, 99.9 2.6E-22 8.9E-27 205.3 13.6 290 273-656 32-329 (330)
45 3oja_B Anopheles plasmodium-re 99.9 4.4E-22 1.5E-26 220.3 14.2 282 272-635 75-358 (597)
46 1ogq_A PGIP-2, polygalacturona 99.9 5.5E-22 1.9E-26 200.8 12.2 250 272-607 50-306 (313)
47 2z80_A TOLL-like receptor 2, v 99.9 1.1E-21 3.8E-26 202.6 13.9 268 277-657 36-312 (353)
48 1xku_A Decorin; proteoglycan, 99.8 3.2E-20 1.1E-24 189.7 20.0 275 272-633 52-330 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-20 6.5E-25 191.6 17.2 218 272-566 54-274 (332)
50 2z66_A Variable lymphocyte rec 99.8 6.7E-20 2.3E-24 185.3 18.1 226 326-657 28-259 (306)
51 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-20 6.2E-25 210.0 14.7 132 283-430 42-177 (635)
52 1z7x_W Ribonuclease inhibitor; 99.8 9E-22 3.1E-26 211.5 1.1 359 272-657 3-409 (461)
53 1jl5_A Outer protein YOPM; leu 99.8 2.4E-19 8.3E-24 190.6 19.2 122 272-420 91-212 (454)
54 3zyi_A Leucine-rich repeat-con 99.8 4.7E-19 1.6E-23 189.3 20.0 44 614-657 258-301 (452)
55 1z6t_A APAF-1, apoptotic prote 99.8 1.7E-19 5.7E-24 199.7 15.6 209 23-248 216-448 (591)
56 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 183.7 12.6 243 277-566 12-258 (306)
57 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-19 1.5E-23 194.4 18.2 118 273-420 41-158 (622)
58 3zyj_A Leucine-rich repeat-con 99.8 7.1E-19 2.4E-23 187.2 18.1 241 275-603 46-290 (440)
59 3zyj_A Leucine-rich repeat-con 99.8 1.4E-18 4.6E-23 185.1 19.7 243 301-657 45-290 (440)
60 1jl5_A Outer protein YOPM; leu 99.8 2.5E-19 8.7E-24 190.4 13.0 306 272-657 11-348 (454)
61 3o53_A Protein LRIM1, AGAP0063 99.8 3.1E-20 1.1E-24 188.4 3.3 111 287-414 22-132 (317)
62 1ozn_A Reticulon 4 receptor; N 99.8 8E-19 2.7E-23 175.3 12.6 219 275-567 14-236 (285)
63 3ogk_B Coronatine-insensitive 99.8 7.4E-20 2.5E-24 203.1 5.5 109 301-411 140-252 (592)
64 1ozn_A Reticulon 4 receptor; N 99.8 3.3E-18 1.1E-22 170.8 16.5 63 502-566 124-187 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-20 6.2E-25 190.1 0.1 261 301-659 12-275 (317)
66 2z80_A TOLL-like receptor 2, v 99.8 6.4E-19 2.2E-23 181.9 10.6 252 272-567 52-312 (353)
67 3ogk_B Coronatine-insensitive 99.8 1.5E-19 5.1E-24 200.7 5.1 346 274-657 140-524 (592)
68 3zyi_A Leucine-rich repeat-con 99.8 2.7E-18 9.2E-23 183.4 14.6 239 276-567 58-301 (452)
69 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-20 5.7E-25 201.6 -3.2 115 298-415 2-126 (461)
70 3oja_A Leucine-rich immune mol 99.8 4.4E-18 1.5E-22 182.7 14.7 129 503-654 140-270 (487)
71 1wwl_A Monocyte differentiatio 99.8 3.9E-19 1.3E-23 179.9 5.4 159 352-566 93-263 (312)
72 2p1m_B Transport inhibitor res 99.7 6.6E-19 2.3E-23 195.6 3.6 198 272-476 105-324 (594)
73 3g06_A SSPH2 (leucine-rich rep 99.7 8.6E-17 2.9E-21 176.2 20.0 258 298-658 39-296 (622)
74 2ast_B S-phase kinase-associat 99.7 2.8E-18 9.7E-23 175.9 7.3 236 326-643 70-314 (336)
75 1wwl_A Monocyte differentiatio 99.7 2E-18 6.8E-23 174.7 4.7 125 276-415 47-186 (312)
76 1p9a_G Platelet glycoprotein I 99.7 2.5E-16 8.5E-21 157.0 17.7 81 322-412 6-87 (290)
77 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.8E-21 161.2 14.0 190 297-567 39-228 (308)
78 3rfs_A Internalin B, repeat mo 99.7 1.3E-16 4.5E-21 157.8 14.2 62 503-566 153-215 (272)
79 2ca6_A RAN GTPase-activating p 99.7 2.5E-18 8.4E-23 179.8 -0.9 93 295-389 28-133 (386)
80 2xwt_C Thyrotropin receptor; s 99.7 8.5E-17 2.9E-21 156.0 9.9 197 298-566 30-236 (239)
81 2o6q_A Variable lymphocyte rec 99.7 7.4E-16 2.5E-20 152.3 16.6 195 301-567 18-216 (270)
82 3oja_A Leucine-rich immune mol 99.7 2.2E-16 7.5E-21 169.5 13.6 229 284-567 19-248 (487)
83 1p9a_G Platelet glycoprotein I 99.7 4.3E-16 1.5E-20 155.3 14.7 198 297-567 8-206 (290)
84 2p1m_B Transport inhibitor res 99.7 3.4E-18 1.2E-22 189.9 -1.4 320 296-658 102-493 (594)
85 2z62_A TOLL-like receptor 4, v 99.7 1.1E-15 3.6E-20 151.8 16.3 79 327-412 29-110 (276)
86 3rfs_A Internalin B, repeat mo 99.7 2.7E-16 9.3E-21 155.5 11.0 209 322-647 37-247 (272)
87 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.8E-21 158.2 8.8 105 299-413 28-135 (276)
88 2o6q_A Variable lymphocyte rec 99.6 9.1E-16 3.1E-20 151.6 14.1 200 273-547 17-219 (270)
89 2xwt_C Thyrotropin receptor; s 99.6 6.1E-16 2.1E-20 149.9 11.8 39 617-658 199-238 (239)
90 2ast_B S-phase kinase-associat 99.6 1.2E-16 4.3E-21 163.6 6.6 227 274-566 49-282 (336)
91 1h6u_A Internalin H; cell adhe 99.6 1.6E-15 5.4E-20 152.8 12.6 191 272-547 41-231 (308)
92 3goz_A Leucine-rich repeat-con 99.6 5.1E-17 1.7E-21 168.0 1.0 71 318-389 14-91 (362)
93 4glp_A Monocyte differentiatio 99.6 1.6E-15 5.5E-20 153.1 11.0 203 326-565 91-303 (310)
94 4glp_A Monocyte differentiatio 99.6 1.6E-15 5.6E-20 153.1 10.9 181 326-565 64-260 (310)
95 2ca6_A RAN GTPase-activating p 99.6 6.9E-16 2.4E-20 161.2 8.0 246 272-566 32-313 (386)
96 4ay9_X Follicle-stimulating ho 99.6 1.7E-14 5.9E-19 148.2 16.0 237 302-631 12-255 (350)
97 3m19_A Variable lymphocyte rec 99.5 4.3E-14 1.5E-18 137.9 14.5 62 503-566 127-189 (251)
98 3goz_A Leucine-rich repeat-con 99.5 2.3E-16 7.8E-21 163.1 -1.8 79 331-415 3-93 (362)
99 1h6t_A Internalin B; cell adhe 99.5 1.5E-14 5.3E-19 144.2 10.5 100 298-412 45-144 (291)
100 3m19_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 137.1 12.7 43 503-547 151-193 (251)
101 1h6t_A Internalin B; cell adhe 99.5 4.8E-14 1.7E-18 140.6 12.2 169 322-566 42-210 (291)
102 4ay9_X Follicle-stimulating ho 99.5 8.3E-14 2.9E-18 143.0 13.3 237 276-601 13-255 (350)
103 1m9s_A Internalin B; cell inva 99.5 2.9E-14 9.8E-19 156.0 9.8 171 297-547 41-211 (605)
104 1m9s_A Internalin B; cell inva 99.5 6.9E-14 2.3E-18 153.1 11.1 100 298-412 64-163 (605)
105 4ezg_A Putative uncharacterize 99.5 7.7E-14 2.6E-18 130.5 8.8 104 298-412 43-146 (197)
106 2o6s_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 126.8 13.7 68 341-412 17-86 (208)
107 1xeu_A Internalin C; cellular 99.5 4.7E-14 1.6E-18 138.3 6.9 60 502-566 123-182 (263)
108 4ezg_A Putative uncharacterize 99.5 1.9E-13 6.6E-18 127.8 10.4 126 272-412 44-169 (197)
109 3cvr_A Invasion plasmid antige 99.4 9.5E-14 3.3E-18 150.2 8.6 37 510-549 210-246 (571)
110 3cvr_A Invasion plasmid antige 99.4 1.7E-13 5.9E-18 148.1 8.1 175 299-567 59-241 (571)
111 1dce_A Protein (RAB geranylger 99.4 5.6E-15 1.9E-19 160.7 -4.0 84 323-412 346-451 (567)
112 1dce_A Protein (RAB geranylger 99.4 6.4E-15 2.2E-19 160.3 -4.0 120 508-653 442-567 (567)
113 1xeu_A Internalin C; cellular 99.4 9.7E-14 3.3E-18 136.1 3.8 99 298-412 18-116 (263)
114 2v9t_B SLIT homolog 2 protein 99.4 2.7E-12 9.3E-17 122.0 12.1 75 329-412 14-90 (220)
115 2o6s_A Variable lymphocyte rec 99.4 9.3E-13 3.2E-17 124.4 8.5 119 278-412 13-134 (208)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 4.9E-12 1.7E-16 120.3 12.0 74 330-412 15-91 (220)
117 2ell_A Acidic leucine-rich nuc 99.3 2E-12 6.8E-17 117.5 8.6 132 272-420 24-164 (168)
118 2xot_A Amphoterin-induced prot 99.3 3E-12 1E-16 132.0 10.9 121 276-412 22-146 (361)
119 3e6j_A Variable lymphocyte rec 99.3 4.1E-12 1.4E-16 121.7 11.1 127 276-419 23-151 (229)
120 4b8c_D Glucose-repressible alc 99.3 1E-12 3.5E-17 147.6 7.1 146 272-429 173-319 (727)
121 2v9t_B SLIT homolog 2 protein 99.3 5.6E-12 1.9E-16 119.9 10.0 122 276-413 15-139 (220)
122 4b8c_D Glucose-repressible alc 99.3 3.1E-13 1.1E-17 151.8 1.3 186 298-550 172-358 (727)
123 2v70_A SLIT-2, SLIT homolog 2 99.3 9.4E-12 3.2E-16 118.3 11.3 132 276-422 15-149 (220)
124 2ell_A Acidic leucine-rich nuc 99.3 1.1E-11 3.9E-16 112.4 9.5 106 298-413 23-131 (168)
125 2je0_A Acidic leucine-rich nuc 99.3 4.3E-12 1.5E-16 112.7 6.4 106 298-413 16-124 (149)
126 2je0_A Acidic leucine-rich nuc 99.3 7.5E-12 2.6E-16 111.1 7.3 124 272-411 17-149 (149)
127 2xot_A Amphoterin-induced prot 99.2 8.6E-12 2.9E-16 128.5 7.8 176 302-546 21-202 (361)
128 3e6j_A Variable lymphocyte rec 99.2 3.2E-11 1.1E-15 115.5 10.4 130 272-414 40-171 (229)
129 1a9n_A U2A', U2A'; complex (nu 99.2 2.2E-11 7.4E-16 111.4 8.0 126 272-413 19-151 (176)
130 1a9n_A U2A', U2A'; complex (nu 99.2 3E-11 1E-15 110.5 7.7 105 297-413 17-124 (176)
131 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.1E-15 118.3 12.9 125 505-652 200-327 (329)
132 1w8a_A SLIT protein; signaling 99.2 5.6E-11 1.9E-15 110.3 8.6 125 275-414 11-138 (192)
133 2wfh_A SLIT homolog 2 protein 99.1 1.1E-10 3.6E-15 108.4 10.0 122 276-414 14-138 (193)
134 2wfh_A SLIT homolog 2 protein 99.1 2E-10 6.7E-15 106.6 10.4 75 329-412 13-88 (193)
135 2o6r_A Variable lymphocyte rec 99.1 1.6E-10 5.5E-15 105.7 9.7 125 275-415 10-137 (177)
136 1ds9_A Outer arm dynein; leuci 99.1 5.9E-12 2E-16 117.7 -2.8 86 318-412 40-125 (198)
137 1ds9_A Outer arm dynein; leuci 99.1 6.1E-12 2.1E-16 117.6 -2.9 129 274-419 25-157 (198)
138 1w8a_A SLIT protein; signaling 99.0 6.5E-10 2.2E-14 103.0 9.6 109 302-423 11-123 (192)
139 2r9u_A Variable lymphocyte rec 98.9 1.2E-09 4.3E-14 99.2 7.4 80 326-412 33-115 (174)
140 2r9u_A Variable lymphocyte rec 98.9 1.5E-09 5E-14 98.7 7.7 111 275-401 15-127 (174)
141 2o6r_A Variable lymphocyte rec 98.9 2.8E-09 9.7E-14 97.3 9.2 68 341-412 17-86 (177)
142 3g39_A Variable lymphocyte rec 98.9 3.9E-09 1.3E-13 95.6 7.8 80 326-412 30-112 (170)
143 3g39_A Variable lymphocyte rec 98.8 4.5E-09 1.6E-13 95.1 7.2 100 275-389 12-113 (170)
144 4fdw_A Leucine rich hypothetic 98.8 1.3E-07 4.3E-12 98.2 18.6 260 298-657 112-381 (401)
145 3sb4_A Hypothetical leucine ri 98.8 7.6E-09 2.6E-13 104.9 8.3 257 325-629 24-328 (329)
146 3un9_A NLR family member X1; l 98.6 1.3E-08 4.5E-13 104.5 3.4 110 298-412 71-193 (372)
147 4fdw_A Leucine rich hypothetic 98.6 1.9E-06 6.4E-11 89.3 18.3 102 296-412 133-236 (401)
148 3un9_A NLR family member X1; l 98.5 2.5E-08 8.5E-13 102.4 3.6 171 325-546 71-252 (372)
149 2ifg_A High affinity nerve gro 98.5 2.5E-07 8.6E-12 94.5 8.7 88 318-412 24-113 (347)
150 2ra8_A Uncharacterized protein 98.3 8.5E-07 2.9E-11 90.2 8.1 84 295-386 135-227 (362)
151 2ifg_A High affinity nerve gro 98.3 9.7E-07 3.3E-11 90.1 8.3 98 278-389 14-114 (347)
152 1io0_A Tropomodulin; LRR prote 98.3 3.3E-07 1.1E-11 83.9 3.4 125 288-413 25-162 (185)
153 2ra8_A Uncharacterized protein 98.3 5.5E-07 1.9E-11 91.5 5.3 90 319-411 132-228 (362)
154 3e4g_A ATP synthase subunit S, 98.2 1.6E-06 5.4E-11 77.2 5.3 86 326-415 61-152 (176)
155 4fs7_A Uncharacterized protein 98.2 1.2E-05 4.2E-10 83.4 12.9 284 294-656 66-376 (394)
156 4fs7_A Uncharacterized protein 98.1 4E-05 1.4E-09 79.5 16.4 264 318-656 63-353 (394)
157 3rw6_A Nuclear RNA export fact 98.1 1E-06 3.6E-11 84.7 2.4 82 323-408 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.0 9.7E-07 3.3E-11 78.5 1.0 71 590-661 83-154 (176)
159 1io0_A Tropomodulin; LRR prote 98.0 1.8E-06 6.2E-11 78.9 2.3 97 316-413 26-134 (185)
160 4gt6_A Cell surface protein; l 97.9 0.00019 6.6E-09 74.3 15.3 108 295-412 59-170 (394)
161 3rw6_A Nuclear RNA export fact 97.6 7.3E-05 2.5E-09 71.8 6.7 84 296-386 167-259 (267)
162 4gt6_A Cell surface protein; l 97.4 0.002 7E-08 66.5 14.3 125 274-412 66-192 (394)
163 1w5s_A Origin recognition comp 97.2 0.0015 5.3E-08 67.8 11.9 205 8-225 103-372 (412)
164 2qen_A Walker-type ATPase; unk 97.0 0.0027 9.2E-08 64.3 10.8 198 25-245 111-348 (350)
165 2fna_A Conserved hypothetical 97.0 0.0042 1.4E-07 63.0 11.8 196 26-244 123-355 (357)
166 4h09_A Hypothetical leucine ri 97.0 0.019 6.6E-07 58.7 16.8 33 298-334 45-77 (379)
167 4h09_A Hypothetical leucine ri 96.5 0.034 1.2E-06 56.8 14.7 80 322-412 42-123 (379)
168 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0049 1.7E-07 55.8 3.8 122 290-412 32-167 (197)
169 2v1u_A Cell division control p 95.7 0.26 8.9E-06 50.1 16.5 205 8-225 95-352 (387)
170 1fnn_A CDC6P, cell division co 95.3 0.25 8.5E-06 50.4 14.8 230 8-250 90-385 (389)
171 2qby_B CDC6 homolog 3, cell di 95.1 0.27 9.2E-06 50.0 14.4 203 8-226 99-341 (384)
172 1pgv_A TMD-1, tropomodulin TMD 94.7 0.025 8.7E-07 51.1 4.5 96 316-412 31-136 (197)
173 1njg_A DNA polymerase III subu 94.4 0.095 3.3E-06 49.3 8.2 94 39-135 124-231 (250)
174 3rfe_A Platelet glycoprotein I 93.6 0.087 3E-06 44.2 5.3 52 330-389 12-66 (130)
175 2qby_A CDC6 homolog 1, cell di 92.7 1.1 3.8E-05 45.3 13.3 205 8-225 93-349 (386)
176 3rfe_A Platelet glycoprotein I 91.5 0.14 4.8E-06 42.9 3.8 53 357-413 11-66 (130)
177 2chg_A Replication factor C sm 89.0 1.5 5.2E-05 40.0 9.2 42 40-81 101-142 (226)
178 1sxj_B Activator 1 37 kDa subu 83.4 2.6 8.8E-05 41.3 7.9 43 39-81 105-147 (323)
179 1iqp_A RFCS; clamp loader, ext 67.0 12 0.0004 36.5 7.5 93 40-135 109-215 (327)
180 1g5t_A COB(I)alamin adenosyltr 62.2 10 0.00036 33.8 5.3 54 28-81 106-163 (196)
181 1jr3_A DNA polymerase III subu 57.4 22 0.00075 35.3 7.6 43 39-81 117-159 (373)
182 1hqc_A RUVB; extended AAA-ATPa 48.0 1.6E+02 0.0054 28.1 12.0 93 40-135 89-214 (324)
183 2chq_A Replication factor C sm 41.9 55 0.0019 31.3 7.5 42 40-81 101-142 (319)
184 3ec2_A DNA replication protein 25.0 34 0.0012 29.6 2.4 41 41-81 100-143 (180)
185 1sxj_D Activator 1 41 kDa subu 23.1 1.9E+02 0.0064 27.9 7.8 42 40-81 132-173 (353)
186 1a5t_A Delta prime, HOLB; zinc 23.1 67 0.0023 31.3 4.3 42 40-81 107-148 (334)
187 1sxj_E Activator 1 40 kDa subu 21.6 71 0.0024 31.2 4.2 41 41-81 134-174 (354)
188 2vda_B Maltoporin; sugar trans 20.7 61 0.0021 17.5 1.8 17 122-138 9-25 (28)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.7e-29 Score=275.26 Aligned_cols=226 Identities=16% Similarity=0.200 Sum_probs=170.4
Q ss_pred HHHHHHHHcCCCCC-------CCchhHHHHHHHHHHHcCCc-eEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEec
Q 044935 8 EARAIIEALKPGST-------KDLVEFQSLMQHIQECVEGE-KFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTR 79 (683)
Q Consensus 8 l~~~il~~~~~~~~-------~~~~~~~~~~~~l~~~l~~k-r~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr 79 (683)
++++|+++++ ... .+..+.+.+...+++.|++| ||||||||||+.++..|. . .+||+||||||
T Consensus 203 ~~~~il~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~-------~-~~gs~ilvTTR 273 (549)
T 2a5y_B 203 LFTDILLMLK-SEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA-------Q-ELRLRCLVTTR 273 (549)
T ss_dssp HHHHHHHHHT-TTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHH-------H-HTTCEEEEEES
T ss_pred HHHHHHHHHh-cCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccc-------c-cCCCEEEEEcC
Confidence 9999999998 431 12335677899999999996 999999999975432222 1 27999999999
Q ss_pred CchhhhccC-CcchH-----------HHHHHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHH
Q 044935 80 NETTAHNMG-STNII-----------QLMFSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNI 147 (683)
Q Consensus 80 ~~~v~~~~~-~~~~~-----------~ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~ 147 (683)
++.++..++ ....| ++|...++.. ...+.+++++++|+++|+|+||||+++|+.|+.+ ..+ |...
T Consensus 274 ~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w~-~~~~ 350 (549)
T 2a5y_B 274 DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPM-PVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFE-KMAQ 350 (549)
T ss_dssp BGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHH-HHHH
T ss_pred CHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hHH-HHHH
Confidence 999998775 22233 3354444333 2246788899999999999999999999999876 332 3333
Q ss_pred HHhhhhccccccccchHHHHHhhcCCChhhHHHhh-----------hhccCCCCeeeChHHHHHHHHHh--CcHH-----
Q 044935 148 LESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFS-----------YCAVFPKDREIWKYELIKLWMAQ--GYLN----- 209 (683)
Q Consensus 148 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-----------~~a~fp~~~~~~~~~li~~w~~~--g~~~----- 209 (683)
+....+.. ...++++++.+||+.||+++|.||+ |||+||+++.++ +..|+++ ||+.
T Consensus 351 l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 351 LNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C
T ss_pred hHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCC
Confidence 43322211 2456888999999999999999999 999999999987 8899999 8774
Q ss_pred -------HHHHHHHhcCCceeecCCCCCCeeEEehhHHHHHHHHHHhhccee
Q 044935 210 -------EYFNILASSSFFQEFNADGDGEVYMCKMHDLVHDLAQFIWRNECL 254 (683)
Q Consensus 210 -------~~l~~L~~~~ll~~~~~~~~g~~~~~~mhdl~~~~~~~~~~~e~~ 254 (683)
.++++|++++|++....+ ....|+|||++|++|+.++.+++.
T Consensus 425 ~~~~~~~~~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 425 QLDDEVADRLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCTHHHHHHHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCHHHHHHHHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 479999999999987543 344689999999999988877653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.6e-29 Score=285.32 Aligned_cols=376 Identities=20% Similarity=0.192 Sum_probs=214.6
Q ss_pred CceEEEEEEecCCC-CcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcc-ccccc
Q 044935 272 KKVLHLMLTIDEGT-SVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIK-EIPTN 349 (683)
Q Consensus 272 ~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~lp~~ 349 (683)
..++.+.+..+.+. .+|..+.. .+++|++|++++|.+. ..+|..|.++++|++|++++ +.+. .+|..
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~---~~~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~-----n~l~~~ip~~ 337 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSG---ACDTLTGLDLSGNHFY---GAVPPFFGSCSLLESLALSS-----NNFSGELPMD 337 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCT---TCTTCSEEECCSSEEE---ECCCGGGGGCTTCCEEECCS-----SEEEEECCHH
T ss_pred CCCCEEECcCCccCCccCHHHHh---hcCcCCEEECcCCcCC---CccchHHhcCCCccEEECCC-----CcccCcCCHH
Confidence 34555555555443 23333322 1366666666666532 34555566666666666666 3333 55544
Q ss_pred -ccCCCCCcEEeecCCCCccccchHHhccc-CCcEEeccCccchhhccccccc--ccccceEecCCCccccccccccCCC
Q 044935 350 -IKNLLHLKYLSLFGESEIKRLPEVLCELY-NLERLDVRFCVNLRELLQGIGK--LRKLMYLDNEGTNSLRFLPVGIGEL 425 (683)
Q Consensus 350 -i~~l~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~--l~~L~~L~l~~~~~~~~~p~~~~~l 425 (683)
++.+++|++|++++|.....+|..+.+++ +|++|++++|.....+|..+.. +++|++|++++|.....+|..++.+
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 66666666666666663335666666665 6666666666543444555444 5566666666665555566666655
Q ss_pred CCCCCc------------cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCch
Q 044935 426 ISLRNL------------GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEE 493 (683)
Q Consensus 426 ~~L~~l------------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 493 (683)
++|+.+ ..+..++.|+.+.+....- ....+..+..+++|+.|++++|.+.+.
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~------------ 481 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDLTGE------------ 481 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC----CSCCCGGGGGCTTCCEEECCSSCCCSC------------
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc----cCcCCHHHcCCCCceEEEecCCcccCc------------
Confidence 555522 1233344444444433211 112334455666677777766664332
Q ss_pred hHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEe
Q 044935 494 DEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRV 572 (683)
Q Consensus 494 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~ 572 (683)
++..+..+++|+.|++++|.+.. ..|.+++.+++|++|++++|.+.+.+|. ++.+++|+.|++++|.....+
T Consensus 482 -----~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 482 -----IPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred -----CCHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 35567778888888888888765 3377888888888888888887777766 788888888888776432122
Q ss_pred cccccCCCC--------------------------------------C--------------------CCCccccccccc
Q 044935 573 GNKFLGVES--------------------------------------D--------------------TDGSSVIAFPKL 594 (683)
Q Consensus 573 ~~~~~~~~~--------------------------------------~--------------------~~~~~~~~~~~L 594 (683)
+..+..... . ........+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 211100000 0 000011123444
Q ss_pred ccccccccc------------------cccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCC
Q 044935 595 KRLAFHTME------------------ELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGC 656 (683)
Q Consensus 595 ~~L~l~~~~------------------~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 656 (683)
+.|+++++. +|+.+.+++.+|..++.+++|+.|+|++|...+.+|..+.++++|++|++++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 444443321 45566677788999999999999999999988889999999999999999987
Q ss_pred cc---------h------------------HHHhhcccCCCCCccCCCCcce
Q 044935 657 PI---------L------------------EERCRKETGEDWPKIRHIPDIE 681 (683)
Q Consensus 657 ~~---------l------------------~~~~~~~~~~~~~~i~~i~~v~ 681 (683)
+- + -..|....+.+|++++|+|.+.
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 31 0 0146667889999999999763
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.4e-27 Score=262.79 Aligned_cols=334 Identities=14% Similarity=0.182 Sum_probs=238.7
Q ss_pred CceEEEEEEecCCCC------------------cccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEe
Q 044935 272 KKVLHLMLTIDEGTS------------------VPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITL 333 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 333 (683)
..++.+.+..+.+.. +|..+. +.++++|++|++++|.+. ..+|..|.++++|++|++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~--~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK--WDNLKDLTDVEVYNCPNL---TKLPTFLKALPEMQLINV 280 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEECCTTC---SSCCTTTTTCSSCCEEEC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhh--hcccCCCCEEEecCCcCC---ccChHHHhcCCCCCEEEC
Confidence 688899999988877 666554 114999999999998753 457888899999999999
Q ss_pred cccCCcccCcc--cccccccCC------CCCcEEeecCCCCccccch--HHhcccCCcEEeccCccchhhcccccccccc
Q 044935 334 ETYGWDYNPIK--EIPTNIKNL------LHLKYLSLFGESEIKRLPE--VLCELYNLERLDVRFCVNLRELLQGIGKLRK 403 (683)
Q Consensus 334 ~~~~~~~~~~~--~lp~~i~~l------~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 403 (683)
++|. .+. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|.....+| .++.+++
T Consensus 281 s~n~----~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 281 ACNR----GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp TTCT----TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred cCCC----CCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 9843 034 578877776 899999999998 678988 89999999999999887333888 8888999
Q ss_pred cceEecCCCccccccccccCCCCC-CCCcc----ccccC---------ccCCCeeEcCCCCCCChhHhHHhccc------
Q 044935 404 LMYLDNEGTNSLRFLPVGIGELIS-LRNLG----SLKKL---------NLLRECWICGRGGVSDAGEARRAELE------ 463 (683)
Q Consensus 404 L~~L~l~~~~~~~~~p~~~~~l~~-L~~l~----~l~~L---------~~L~~l~i~~~~~~~~~~~~~~~~l~------ 463 (683)
|++|++++|. +..+|..++.+++ |+.+. .+..+ ..|+.+.+... ......+..+.
T Consensus 355 L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N----~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 355 LASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN----EIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp ESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS----CTTTTTTCSSCTTCSSC
T ss_pred CCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC----cCCCcchhhhccccccc
Confidence 9999998885 4578877777776 65331 01111 12222222211 11111222233
Q ss_pred -cCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhh-hcCCCCCccEEEEeeecCCCCccCcchHhhc-------cc
Q 044935 464 -QKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLE-ALGPPPNLKELRIHEYRGRRNVVPINWIMSL-------TN 534 (683)
Q Consensus 464 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l-------~~ 534 (683)
.+.+|+.|++++|.+.. ++. .+..+++|++|++++|.+.. +|+..+... ++
T Consensus 430 ~~~~~L~~L~Ls~N~l~~------------------lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 430 FKGINVSSINLSNNQISK------------------FPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYL 489 (636)
T ss_dssp CCCCCEEEEECCSSCCCS------------------CCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGG
T ss_pred ccCCCCCEEECcCCccCc------------------CCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCC
Confidence 44566666666665432 222 23357788888888888775 644444333 38
Q ss_pred cceEeecCCCCCCCCCC-CC--CCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccc
Q 044935 535 LRDLYLSYCRNCEHLPP-LG--KLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFR 611 (683)
Q Consensus 535 L~~L~l~~~~~~~~~~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 611 (683)
|++|++++|.+. .+|. +. .+++|+.|+++++. +.+. +.....+++|+.|+++++..+..+.+.
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~--------l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS--------FSKF-----PTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC--------CSSC-----CCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC--------CCCc-----ChhhhcCCCCCEEECCCCcccccCccc
Confidence 888999888766 4554 54 88899999986654 2221 112346899999999998888889988
Q ss_pred cccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 612 TAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 612 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
+.+|..+..+++|+.|+|++|+. +.+|..+. ++|+.|++++|+-
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred ccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 89999999999999999999986 88998865 8999999999973
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=9.3e-27 Score=263.41 Aligned_cols=337 Identities=15% Similarity=0.179 Sum_probs=231.4
Q ss_pred cCceEEEEEEecCCCC------------------cccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEE
Q 044935 271 QKKVLHLMLTIDEGTS------------------VPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAIT 332 (683)
Q Consensus 271 ~~~~~~l~l~~~~~~~------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 332 (683)
...++.+.+..+.+.. +|..+. |.++++|++|++++|.+. ..+|..|.++++|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~~L~~L~~L~Ls~N~l~---~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WSNLKDLTDVELYNCPNM---TQLPDFLYDLPELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEESCTTC---CSCCGGGGGCSSCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hccCCCCCEEECcCCCCC---ccChHHHhCCCCCCEEE
Confidence 3678888898888776 555543 124888999999988743 45777888899999999
Q ss_pred ecccCCcccCcc--cccccccCCC-------CCcEEeecCCCCccccch--HHhcccCCcEEeccCccchhhcccccccc
Q 044935 333 LETYGWDYNPIK--EIPTNIKNLL-------HLKYLSLFGESEIKRLPE--VLCELYNLERLDVRFCVNLRELLQGIGKL 401 (683)
Q Consensus 333 L~~~~~~~~~~~--~lp~~i~~l~-------~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 401 (683)
|++|. .+. .+|..++.+. +|++|++++|. +..+|. .++++++|++|+|++|. +..+| .++.+
T Consensus 522 Ls~N~----~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 522 IACNR----GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp CTTCT----TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred CcCCC----CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 98843 033 4676666555 89999999888 668888 88889999999998887 56888 88888
Q ss_pred cccceEecCCCccccccccccCCCCC-CCCcc----ccccCc---------cCCCeeEcCCCCCCChhHhHHhccc--cC
Q 044935 402 RKLMYLDNEGTNSLRFLPVGIGELIS-LRNLG----SLKKLN---------LLRECWICGRGGVSDAGEARRAELE--QK 465 (683)
Q Consensus 402 ~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~l~----~l~~L~---------~L~~l~i~~~~~~~~~~~~~~~~l~--~~ 465 (683)
++|+.|++++|.. ..+|..++.+++ |+.+. .+..++ .|+.+.+....-.... ...+..+. .+
T Consensus 595 ~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCC
T ss_pred CcceEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccC
Confidence 8999999988854 478877777666 65331 011110 0222222211100000 00000111 12
Q ss_pred CCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhc-CCCCCccEEEEeeecCCCCccCcchHh-------hccccce
Q 044935 466 KNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEAL-GPPPNLKELRIHEYRGRRNVVPINWIM-------SLTNLRD 537 (683)
Q Consensus 466 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~l~~L~~ 537 (683)
.+|+.|++++|.+. .++..+ ..+++|+.|++++|.+.. +|+..+. .+++|+.
T Consensus 673 ~~L~~L~Ls~N~L~------------------~lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 673 INASTVTLSYNEIQ------------------KFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp CCEEEEECCSSCCC------------------SCCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCE
T ss_pred CCcCEEEccCCcCC------------------ccCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccE
Confidence 25555555555433 223333 367888889988888775 6443333 2348889
Q ss_pred EeecCCCCCCCCCC-CC--CCCCcceEEecCCCCeeEecccccCCCCCCCCccccccccccccccccccccccccccccc
Q 044935 538 LYLSYCRNCEHLPP-LG--KLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAI 614 (683)
Q Consensus 538 L~l~~~~~~~~~~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 614 (683)
|+|++|.+. .+|. +. .+++|+.|+|+++. +.+. +.....+++|+.|++++++.++.+.+.+.+
T Consensus 733 L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~--------L~~l-----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC--------FSSF-----PTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC--------CSSC-----CCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred EECCCCCCc-cchHHhhhccCCCcCEEEeCCCC--------CCcc-----chhhhcCCCCCEEECCCCCCcccccccccC
Confidence 999888766 4554 54 88899999986653 2221 112346899999999999888889988899
Q ss_pred ccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 615 KGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 615 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
|..+..+++|+.|+|++|+. +.+|..+. ++|+.|++++|+.
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 99999999999999999986 88998865 7999999999974
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.5e-26 Score=263.83 Aligned_cols=361 Identities=19% Similarity=0.127 Sum_probs=224.7
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcc-----------
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDY----------- 340 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~----------- 340 (683)
..++.+.+..+.+...+..+. ++++|++|++++|.+. ..+|..+.++++|++|++++|.+..
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~----~l~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLG----DCSALQHLDISGNKLS---GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCT----TCCSCCEEECCSSCCC---SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred CcCCEEECcCCcCCCCCcccc----cCCCCCEEECcCCcCC---CcccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 567777777776655333333 3777777777777642 3456667777777777777754431
Q ss_pred ------cCcc-cccccccCC-CCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccc-cccccccceEecCC
Q 044935 341 ------NPIK-EIPTNIKNL-LHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEG 411 (683)
Q Consensus 341 ------~~~~-~lp~~i~~l-~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~ 411 (683)
+.+. .+|..+..+ ++|++|++++|.....+|..++++++|++|++++|.....+|.. +.++++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 2222 455555553 77777777777633466777777777777777777633366654 67777777777777
Q ss_pred CccccccccccCCCC-CCCCc------------ccccc--CccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEee
Q 044935 412 TNSLRFLPVGIGELI-SLRNL------------GSLKK--LNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFC 476 (683)
Q Consensus 412 ~~~~~~~p~~~~~l~-~L~~l------------~~l~~--L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 476 (683)
|.....+|..++.+. +|+.+ ..+.. ++.|+.+.+... ......+..+..+++|+.|++++|
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN----GFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS----EEEEECCGGGGGCTTCCEEECCSS
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC----ccccccCHHHhcCCCCCEEECcCC
Confidence 755556666655544 44322 01111 223333333221 111123445566667777777766
Q ss_pred cCCCCCcccccCC------CCchhH-HHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCC
Q 044935 477 HSRDGDEEQAGRR------ENEEDE-AERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHL 549 (683)
Q Consensus 477 ~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 549 (683)
.+.+..+..+... ....+. ...++..+..+++|++|++++|.+.. ..|.++..+++|++|++++|.+.+.+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC--cCCHHHhcCCCCCEEEccCCccCCcC
Confidence 6544333222111 111111 12345667778899999999888775 33788889999999999999888777
Q ss_pred CC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccc-------------------------
Q 044935 550 PP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTME------------------------- 603 (683)
Q Consensus 550 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------------------- 603 (683)
|. ++.+++|+.|++++|.....++..+. .+++|+.|++++|+
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~------------~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELG------------DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGG------------GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHc------------CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 76 88899999999988765444443332 35555555554432
Q ss_pred ---------------------------------------------------------------ccccccccccccccccc
Q 044935 604 ---------------------------------------------------------------ELEEWDFRTAIKGEIII 620 (683)
Q Consensus 604 ---------------------------------------------------------------~L~~~~~~~~~~~~~~~ 620 (683)
+|+.+.+++.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 23444555667777777
Q ss_pred CCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 621 MPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 621 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
+++|+.|+|++|...+.+|..+.++++|+.|++++|.
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 8888888888887777788888888888888888875
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.3e-26 Score=256.13 Aligned_cols=308 Identities=14% Similarity=0.136 Sum_probs=199.6
Q ss_pred chhhhcCCCceeEEEecccCCcccCccc------------------cccccc--CCCCCcEEeecCCCCccccchHHhcc
Q 044935 318 LPQLFDKLTCLRAITLETYGWDYNPIKE------------------IPTNIK--NLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 318 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+|..|+++++|++|+|++|. +.. +|..++ ++++|++|++++|...+.+|..++++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCHHHhcccCCCEEECcCCc-----cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 56667777777777777743 333 777777 77777777777777666777777777
Q ss_pred cCCcEEeccCcc-chh-hcccccccc------cccceEecCCCcccccccc--ccCCCCCCCCc-----------ccccc
Q 044935 378 YNLERLDVRFCV-NLR-ELLQGIGKL------RKLMYLDNEGTNSLRFLPV--GIGELISLRNL-----------GSLKK 436 (683)
Q Consensus 378 ~~L~~L~L~~~~-~l~-~lp~~i~~l------~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~l-----------~~l~~ 436 (683)
++|++|++++|. ... .+|..++.+ ++|++|++++|... .+|. .++.+++|+.+ +.+..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence 777777777775 333 577777665 77777777777443 6776 66666666532 12333
Q ss_pred CccCCCeeEcCCCCCCChhHhHHhccccCCC-CCeEEEEeecCCCCCccccc--------CCCCchhHH-HHHhhhcC--
Q 044935 437 LNLLRECWICGRGGVSDAGEARRAELEQKKN-LLKLGLHFCHSRDGDEEQAG--------RRENEEDEA-ERLLEALG-- 504 (683)
Q Consensus 437 L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~-- 504 (683)
++.|+.+.+.... . ...+..+..+++ |+.|++++|.+...+ ..+. .+....+.+ ...|..+.
T Consensus 352 l~~L~~L~L~~N~----l-~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 352 EIKLASLNLAYNQ----I-TEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EEEESEEECCSSE----E-EECCTTSEEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCCCEEECCCCc----c-ccccHhhhhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 3444444443211 1 133445666777 777777777765322 1111 111111111 22334455
Q ss_pred -----CCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC--CCC-------CCCcceEEecCCCCee
Q 044935 505 -----PPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP--LGK-------LPSLEDLHILGMESVK 570 (683)
Q Consensus 505 -----~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--l~~-------l~~L~~L~L~~~~~l~ 570 (683)
.+++|++|++++|.+.. +|+..+..+++|++|++++|.+. .+|. +.. +++|+.|+++++. +.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 501 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LT 501 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CC
T ss_pred ccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CC
Confidence 56788999999888876 75566667899999999998776 4444 222 2389999997754 22
Q ss_pred EecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeec------CCCCCCcCCcCCCC
Q 044935 571 RVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSID------DCPKLKALPDRLLQ 644 (683)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp~~l~~ 644 (683)
.++..+. ...+++|+.|+++++ .+++ +|..+..+++|+.|+++ +|...+.+|..+.+
T Consensus 502 ~lp~~~~----------~~~l~~L~~L~Ls~N------~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 502 KLSDDFR----------ATTLPYLVGIDLSYN------SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp BCCGGGS----------TTTCTTCCEEECCSS------CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred ccChhhh----------hccCCCcCEEECCCC------CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 2222221 015889999965554 4444 67788899999999994 56667789999999
Q ss_pred CCCCceEEEeCCcc
Q 044935 645 KTTLQRLEIYGCPI 658 (683)
Q Consensus 645 l~~L~~L~l~~c~~ 658 (683)
+++|+.|++++|.-
T Consensus 565 l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 565 CPSLTQLQIGSNDI 578 (636)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 99999999999974
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.5e-26 Score=258.71 Aligned_cols=313 Identities=14% Similarity=0.158 Sum_probs=221.5
Q ss_pred chhhhcCCCceeEEEecccCCcccCc-------------cccccccc--CCCCCcEEeecCCCCccccchHHhcccCCcE
Q 044935 318 LPQLFDKLTCLRAITLETYGWDYNPI-------------KEIPTNIK--NLLHLKYLSLFGESEIKRLPEVLCELYNLER 382 (683)
Q Consensus 318 ~~~~~~~l~~L~~L~L~~~~~~~~~~-------------~~lp~~i~--~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 382 (683)
+|..|.++++|++|+|++|.++...+ ..+|..++ ++++|++|+|++|...+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67789999999999999955432000 02898888 9999999999999878899999999999999
Q ss_pred EeccCccchh--hccccccccc-------ccceEecCCCcccccccc--ccCCCCCCCCc----------cccccCccCC
Q 044935 383 LDVRFCVNLR--ELLQGIGKLR-------KLMYLDNEGTNSLRFLPV--GIGELISLRNL----------GSLKKLNLLR 441 (683)
Q Consensus 383 L~L~~~~~l~--~lp~~i~~l~-------~L~~L~l~~~~~~~~~p~--~~~~l~~L~~l----------~~l~~L~~L~ 441 (683)
|+|++|..+. .+|..++.++ +|++|++++|... .+|. .++.+++|+.+ +.+..++.|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence 9999987343 5888777776 9999999999654 8888 88888877632 3444555566
Q ss_pred CeeEcCCCCCCChhHhHHhccccCCC-CCeEEEEeecCCCCCccccc--------CCCCchhHHHHHhh----hcC--CC
Q 044935 442 ECWICGRGGVSDAGEARRAELEQKKN-LLKLGLHFCHSRDGDEEQAG--------RRENEEDEAERLLE----ALG--PP 506 (683)
Q Consensus 442 ~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~----~~~--~~ 506 (683)
.+.+....-. ..+..+..+++ |+.|++++|.+...+ ..+. .+....+.+...++ .+. .+
T Consensus 599 ~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 599 DLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp EEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred EEECcCCccc-----cchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 6655542211 34456777888 999999999876322 2211 11122222211111 112 34
Q ss_pred CCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CC--------CCCCcceEEecCCCCeeEeccccc
Q 044935 507 PNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LG--------KLPSLEDLHILGMESVKRVGNKFL 577 (683)
Q Consensus 507 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~--------~l~~L~~L~L~~~~~l~~~~~~~~ 577 (683)
++|+.|++++|.+.. +|+..+..+++|+.|++++|.+. .+|. +. ++++|+.|+|++|. +..++..+.
T Consensus 673 ~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~ 748 (876)
T 4ecn_A 673 INASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFR 748 (876)
T ss_dssp CCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGS
T ss_pred CCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchHHhh
Confidence 589999999998886 75555568899999999999766 4444 22 23489999997764 323332221
Q ss_pred CCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecC------CCCCCcCCcCCCCCCCCceE
Q 044935 578 GVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDD------CPKLKALPDRLLQKTTLQRL 651 (683)
Q Consensus 578 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L 651 (683)
...+++|+.|+++++ .+.+ +|..+..+++|+.|+|++ |...+.+|..+.++++|+.|
T Consensus 749 ----------~~~l~~L~~L~Ls~N------~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 749 ----------ATTLPYLSNMDVSYN------CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp ----------TTTCTTCCEEECCSS------CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ----------hccCCCcCEEEeCCC------CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 015889999976655 3433 577788999999999977 66677899999999999999
Q ss_pred EEeCCcc
Q 044935 652 EIYGCPI 658 (683)
Q Consensus 652 ~l~~c~~ 658 (683)
++++|.-
T Consensus 812 ~Ls~N~L 818 (876)
T 4ecn_A 812 QIGSNDI 818 (876)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 9999974
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=6.6e-26 Score=243.32 Aligned_cols=344 Identities=15% Similarity=0.104 Sum_probs=227.8
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i 350 (683)
+.++++.+.++.+..++.. .+.++++|++|++++|.+. ....+..|.++++|++|+|++| .+..+ |..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET---SFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYN-----QFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEECTT---TTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTC-----TTCEECTTTT
T ss_pred CccCEEEecCCccCcCChh---HhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCC-----ccCccChhhc
Confidence 6899999999988766332 2345999999999999752 1334667899999999999994 44444 7789
Q ss_pred cCCCCCcEEeecCCCCcc-ccchH--HhcccCCcEEeccCccchhhc-ccc-cccccccceEecCCCccccccccccCCC
Q 044935 351 KNLLHLKYLSLFGESEIK-RLPEV--LCELYNLERLDVRFCVNLREL-LQG-IGKLRKLMYLDNEGTNSLRFLPVGIGEL 425 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~-~lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l 425 (683)
+.+++|++|++++|. +. .+|.. +.++++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+
T Consensus 100 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 100 NGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred cCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 999999999999998 54 45554 8899999999999998 5544 655 7899999999999997665556655544
Q ss_pred CC--CCCcc--------------------ccccCccCCCeeEcCCCCCCChhHhHHhccc---cCCCCCeEEEEeecCCC
Q 044935 426 IS--LRNLG--------------------SLKKLNLLRECWICGRGGVSDAGEARRAELE---QKKNLLKLGLHFCHSRD 480 (683)
Q Consensus 426 ~~--L~~l~--------------------~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~ 480 (683)
.. ++.+. .+..++.|+.+.+.+..- ....+..+. ...+|+.|++++|....
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF----KESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC----CHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc----cccchhhhhccccccceeeEeeccccccc
Confidence 21 11110 000111222222221110 011111111 11344444444443211
Q ss_pred CCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcc
Q 044935 481 GDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLE 559 (683)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~ 559 (683)
.............. .-.-...++|+.|++++|.+.. .+|.++..+++|++|++++|.+.+..+. ++.+++|+
T Consensus 254 ~~~~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 254 SSFGHTNFKDPDNF-----TFKGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp CCTTCCSSCCCCTT-----TTGGGTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccchhhhccCccc-----ccccccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 10000000000000 0000123689999999998877 5588899999999999999988877664 89999999
Q ss_pred eEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCC
Q 044935 560 DLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALP 639 (683)
Q Consensus 560 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 639 (683)
.|+++++..-...+..+ ..+++|++|+++++ .+++..|..+..+++|++|++++|... .+|
T Consensus 327 ~L~Ls~N~l~~~~~~~~------------~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~ 387 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMF------------ENLDKLEVLDLSYN------HIRALGDQSFLGLPNLKELALDTNQLK-SVP 387 (455)
T ss_dssp EEECCSSCCCEECGGGG------------TTCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCS-CCC
T ss_pred EEECCCCccCCcChhHh------------cCcccCCEEECCCC------cccccChhhccccccccEEECCCCccc-cCC
Confidence 99998875322112222 25889999966655 455556778889999999999999754 555
Q ss_pred c-CCCCCCCCceEEEeCCc
Q 044935 640 D-RLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 640 ~-~l~~l~~L~~L~l~~c~ 657 (683)
. .+..+++|+.|++++|+
T Consensus 388 ~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HhHhccCCcccEEEccCCC
Confidence 4 56789999999999886
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.5e-26 Score=257.88 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=92.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i 350 (683)
..++++.+.++.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+ |..|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~-----n~l~~~~p~~~ 100 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTG-----NPIQSFSPGSF 100 (606)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTT-----CCCCCCCTTSS
T ss_pred CCcCEEECCCCCcCEeChh---hccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCC-----CcccccChhhc
Confidence 5778888888777765543 2334788888888887643 44566677888888888887 444454 6677
Q ss_pred cCCCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchh-hcccccccccccceEecCCCcccc
Q 044935 351 KNLLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLR-ELLQGIGKLRKLMYLDNEGTNSLR 416 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~ 416 (683)
+++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|....
T Consensus 101 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 101 SGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 778888888887777 55554 557777777777777776222 467777777777777777775433
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.9e-24 Score=223.09 Aligned_cols=301 Identities=16% Similarity=0.193 Sum_probs=224.8
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
+.++++.+.++.+..++. +..+++|++|++++|.+.. ++. +.++++|++|++++ +.+..+| .+.
T Consensus 44 ~~L~~L~l~~~~i~~~~~-----~~~~~~L~~L~l~~n~i~~----~~~-~~~l~~L~~L~L~~-----n~i~~~~-~~~ 107 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-----IEYLTNLEYLNLNGNQITD----ISP-LSNLVKLTNLYIGT-----NKITDIS-ALQ 107 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-----GGGCTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCS-----SCCCCCG-GGT
T ss_pred ccccEEEEeCCccccchh-----hhhcCCccEEEccCCcccc----chh-hhcCCcCCEEEccC-----CcccCch-HHc
Confidence 688999999988877653 3459999999999998632 344 88999999999999 4455555 589
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
.+++|++|++++|. +..+|. +..+++|++|++++|..+..++ .+..+++|++|++++|.. ..++. ++.+
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~-~~~~~-~~~l------ 176 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV-KDVTP-IANL------ 176 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC-CCCGG-GGGC------
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc-CCchh-hccC------
Confidence 99999999999998 888887 8999999999999997566544 589999999999999853 33332 3333
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccE
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKE 511 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 511 (683)
+.|+.+.+.+..-. .. ..+..+++|+.|++++|.+... ..+..+++|++
T Consensus 177 ------~~L~~L~l~~n~l~-~~-----~~~~~l~~L~~L~l~~n~l~~~-------------------~~~~~~~~L~~ 225 (347)
T 4fmz_A 177 ------TDLYSLSLNYNQIE-DI-----SPLASLTSLHYFTAYVNQITDI-------------------TPVANMTRLNS 225 (347)
T ss_dssp ------TTCSEEECTTSCCC-CC-----GGGGGCTTCCEEECCSSCCCCC-------------------GGGGGCTTCCE
T ss_pred ------CCCCEEEccCCccc-cc-----ccccCCCccceeecccCCCCCC-------------------chhhcCCcCCE
Confidence 23333333332111 11 1267889999999999875432 12567889999
Q ss_pred EEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccc
Q 044935 512 LRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAF 591 (683)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 591 (683)
|++++|.+.. +++ +..+++|++|++++|.+.. ++.+..+++|+.|++++|. +...+ ....+
T Consensus 226 L~l~~n~l~~--~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l 286 (347)
T 4fmz_A 226 LKIGNNKITD--LSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNL 286 (347)
T ss_dssp EECCSSCCCC--CGG--GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGC
T ss_pred EEccCCccCC--Ccc--hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCC
Confidence 9999998877 533 7899999999999996554 5678899999999998764 22111 12368
Q ss_pred cccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 592 PKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 592 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
++|+.|++++|. +.+..+..+..+++|+.|++++|+.. .++. +..+++|+.|++++|+
T Consensus 287 ~~L~~L~L~~n~------l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNNQ------LGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSC------CCGGGHHHHHTCTTCSEEECCSSSCC-CCGG-GGGCTTCSEESSSCC-
T ss_pred CCCCEEECcCCc------CCCcChhHhhccccCCEEEccCCccc-cccC-hhhhhccceeehhhhc
Confidence 899999766653 44445667788999999999999854 4444 7779999999999997
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.2e-25 Score=244.32 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=98.8
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i 350 (683)
..++++.+..+.+..++.. .+.++++|++|++++|.+. ...+..|.++++|++|+|++ +.+..+| ..+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~ 96 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTG-----NPIQSLALGAF 96 (570)
T ss_dssp SSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTT-----CCCCEECTTTT
T ss_pred ccccEEEccCCccCccChh---HhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeCcC-----CcCCccCHhhh
Confidence 5678888888877765543 2334888888888888753 44566678888888888888 4445554 567
Q ss_pred cCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchh--hcccccccccccceEecCCCccccccccccCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLR--ELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELIS 427 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 427 (683)
+.+++|++|++++|. +..+|. .++++++|++|++++|. +. .+|..++++++|++|++++|......|..++.+++
T Consensus 97 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred cCccccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 778888888888877 666664 47778888888888776 43 35777777888888888777543333344444333
Q ss_pred C
Q 044935 428 L 428 (683)
Q Consensus 428 L 428 (683)
|
T Consensus 175 L 175 (570)
T 2z63_A 175 M 175 (570)
T ss_dssp C
T ss_pred c
Confidence 3
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=233.24 Aligned_cols=313 Identities=17% Similarity=0.151 Sum_probs=207.0
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~ 354 (683)
.+.........+|..+ .++++.|++++|.+. ...+..|.++++|++|+|++ +.+..+ |..+++++
T Consensus 15 ~v~c~~~~l~~ip~~~------~~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~-----n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI------PTETRLLDLGKNRIK---TLNQDEFASFPHLEELELNE-----NIVSAVEPGAFNNLF 80 (477)
T ss_dssp EEECCSCCCSSCCSCC------CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECTT-----SCCCEECTTTTTTCT
T ss_pred EEEeCCCCcCcCCCCC------CCCCcEEECCCCccc---eECHhHccCCCCCCEEECCC-----CccCEeChhhhhCCc
Confidence 3444445556666554 457888888888753 44466788888888888888 444444 66788888
Q ss_pred CCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccc
Q 044935 355 HLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGS 433 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~ 433 (683)
+|++|+|++|. +..+|.. +.++++|++|+|++|......|..+..+++|++|++++|......|..++.+++|+.
T Consensus 81 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--- 156 (477)
T 2id5_A 81 NLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ--- 156 (477)
T ss_dssp TCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE---
T ss_pred cCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE---
Confidence 88888888887 7777753 678888888888888743444566788888888888887554444445554443332
Q ss_pred cccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEE
Q 044935 434 LKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELR 513 (683)
Q Consensus 434 l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 513 (683)
+.+.... .....+..+..+++|+.|++++|.+.... +..+..+++|++|+
T Consensus 157 ---------L~l~~n~----l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-----------------~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 157 ---------LTLEKCN----LTSIPTEALSHLHGLIVLRLRHLNINAIR-----------------DYSFKRLYRLKVLE 206 (477)
T ss_dssp ---------EEEESCC----CSSCCHHHHTTCTTCCEEEEESCCCCEEC-----------------TTCSCSCTTCCEEE
T ss_pred ---------EECCCCc----CcccChhHhcccCCCcEEeCCCCcCcEeC-----------------hhhcccCcccceee
Confidence 2222211 11112334667788888888888743321 23566778888999
Q ss_pred EeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC--CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccc
Q 044935 514 IHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP--LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAF 591 (683)
Q Consensus 514 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 591 (683)
+++|..... + +.......+|++|++++|.+.. +|. +..+++|+.|+++++. +..+.... ...+
T Consensus 207 l~~~~~~~~-~-~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l 271 (477)
T 2id5_A 207 ISHWPYLDT-M-TPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-----------LHEL 271 (477)
T ss_dssp EECCTTCCE-E-CTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC-CCEECTTS-----------CTTC
T ss_pred CCCCccccc-c-CcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc-CCccChhh-----------cccc
Confidence 888776553 3 3333445588999998886554 442 7788889999887765 22222211 1247
Q ss_pred cccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc-CCCCCCCCceEEEeCCcc
Q 044935 592 PKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD-RLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 592 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~ 658 (683)
++|+.|++.+ +.+....|..+..+++|+.|+|++|.. +.+|. .+..+++|+.|++++||-
T Consensus 272 ~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 272 LRLQEIQLVG------GQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTCCEEECCS------SCCSEECTTTBTTCTTCCEEECCSSCC-SCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccCCEEECCC------CccceECHHHhcCcccCCEEECCCCcC-ceeCHhHcCCCcccCEEEccCCCc
Confidence 7888885554 444455667778889999999999864 44544 567788999999988873
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=7.1e-25 Score=244.23 Aligned_cols=348 Identities=14% Similarity=0.088 Sum_probs=210.3
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i 350 (683)
..++++.+.++.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|+|++| .+..+ |..+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~ 101 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTAN-----PLIFMAETAL 101 (606)
T ss_dssp TTCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTC-----CCSEECTTTT
T ss_pred CcCcEEEccCCccCcCChh---HhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCC-----cccccChhhh
Confidence 5788999998888776433 3345899999999998753 456777889999999999984 44444 6678
Q ss_pred cCCCCCcEEeecCCCCcccc-chHHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCccccccccccCCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRL-PEVLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL 428 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 428 (683)
+.+++|++|++++|. +..+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|
T Consensus 102 ~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp SSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred cccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 888889999998888 6665 5668888888888888887 55442 344448888888888885544445556665555
Q ss_pred CC--cc----ccc-------cCccCCCeeEcCCC-----------------------CC---------------------
Q 044935 429 RN--LG----SLK-------KLNLLRECWICGRG-----------------------GV--------------------- 451 (683)
Q Consensus 429 ~~--l~----~l~-------~L~~L~~l~i~~~~-----------------------~~--------------------- 451 (683)
+. +. .+. ....|+.+.+.+.. ..
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 41 10 000 00001111111000 00
Q ss_pred ----CChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcc
Q 044935 452 ----SDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPIN 527 (683)
Q Consensus 452 ----~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 527 (683)
.......+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.. ++|.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------~lp~~l~~l~~L~~L~l~~n~l~~--~~~~ 319 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS------------------ELPSGLVGLSTLKKLVLSANKFEN--LCQI 319 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS------------------CCCSSCCSCTTCCEEECTTCCCSB--GGGG
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC------------------CCChhhcccccCCEEECccCCcCc--Cchh
Confidence 0001111223455666677776666543 344556667777777777776665 4455
Q ss_pred hHhhccccceEeecCCCCCCCCCC--CCCCCCcceEEecCCCCeeEe--cccccCCCC------------CCCCcccccc
Q 044935 528 WIMSLTNLRDLYLSYCRNCEHLPP--LGKLPSLEDLHILGMESVKRV--GNKFLGVES------------DTDGSSVIAF 591 (683)
Q Consensus 528 ~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~------------~~~~~~~~~~ 591 (683)
.+..+++|++|++++|.....++. ++.+++|+.|+++++..-... ...+..... .........+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 666777777777777765544443 666777777777654422211 111110000 0000011235
Q ss_pred cccccccccccccccccccccccc-cccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 592 PKLKRLAFHTMEELEEWDFRTAIK-GEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 592 ~~L~~L~l~~~~~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
++|+.|++.++ .+.+..+ ..+..+++|+.|++++|......|..+..+++|++|++++|+-
T Consensus 400 ~~L~~L~l~~n------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 400 PQLELLDLAFT------RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp TTCSEEECTTC------CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred ccCCeEECCCC------cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 55666644433 2322222 3366788888888888887666777788889999999988863
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=9.1e-25 Score=243.35 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=114.0
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~ 354 (683)
.+...+..+..+|..+ .+++++|++++|.+. ...+..|.++++|++|++++ +.+..+ |..|++++
T Consensus 15 ~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~~~~l~ 80 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLK---ILKSYSFSNFSELQWLDLSR-----CEIETIEDKAWHGLH 80 (606)
T ss_dssp EEECTTSCCSSCCTTS------CTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCT
T ss_pred ceEccCCCcccCCCCC------CCCcCEEECCCCCcC---EeChhhccCCccCcEEeCCC-----CcccccCHHHhhchh
Confidence 4555566677777755 478999999999864 44566799999999999999 555566 56789999
Q ss_pred CCcEEeecCCCCcccc-chHHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCcccc-ccccccCCCCCCC
Q 044935 355 HLKYLSLFGESEIKRL-PEVLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLR-FLPVGIGELISLR 429 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~ 429 (683)
+|++|++++|. +..+ |..++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|+
T Consensus 81 ~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 81 HLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred hcCEeECCCCc-ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 99999999999 6665 7889999999999999998 65555 778999999999999996544 5788899888887
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.3e-24 Score=239.08 Aligned_cols=362 Identities=16% Similarity=0.170 Sum_probs=220.6
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-c
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-I 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i 350 (683)
..++++.+.++.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|++++ +.+..+|.. +
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSD-----NHLSSLSSSWF 94 (549)
T ss_dssp TTCCEEECCSSCCCEECSS---TTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTT-----SCCCSCCHHHH
T ss_pred CCccEEECcCCccCccChh---hhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCC-----CccCccCHHHh
Confidence 5788888888887765432 2345888888888888753 44566788888888888888 445555544 8
Q ss_pred cCCCCCcEEeecCCCCcc--ccchHHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCccccccccccCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIK--RLPEVLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLPVGIGELIS 427 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 427 (683)
+.+++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.+++
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 888888888888887 55 345668888888888888877566666 46788888888888887666566766666655
Q ss_pred CCCcc----c--------cccCccCCCeeEcCCCCCC---------------------------ChhHhHHhcccc----
Q 044935 428 LRNLG----S--------LKKLNLLRECWICGRGGVS---------------------------DAGEARRAELEQ---- 464 (683)
Q Consensus 428 L~~l~----~--------l~~L~~L~~l~i~~~~~~~---------------------------~~~~~~~~~l~~---- 464 (683)
|+.+. . ...++.|+.+.+....-.. .........+..
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 54221 0 0112223332222210000 000000011111
Q ss_pred -------------------------------------------------------CCCCCeEEEEeecCCCCCccc----
Q 044935 465 -------------------------------------------------------KKNLLKLGLHFCHSRDGDEEQ---- 485 (683)
Q Consensus 465 -------------------------------------------------------~~~L~~L~l~~~~~~~~~~~~---- 485 (683)
..+|+.|++++|.+...+...
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 123334444443332211110
Q ss_pred --ccCCCCchhHH-HHH---hhhcCCCCCccEEEEeeecCCCCccCc--chHhhccccceEeecCCCCCCCCCC-CCCCC
Q 044935 486 --AGRRENEEDEA-ERL---LEALGPPPNLKELRIHEYRGRRNVVPI--NWIMSLTNLRDLYLSYCRNCEHLPP-LGKLP 556 (683)
Q Consensus 486 --~~~~~~~~~~~-~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~ 556 (683)
+..+....+.+ ..+ +..++.+++|++|++++|.+.. +++ ..+..+++|++|++++|.+.. +|. ++.++
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~ 410 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPE 410 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCT
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCcc-CChhhcccc
Confidence 01111111111 222 2346778899999999998876 422 457789999999999997664 554 88889
Q ss_pred CcceEEecCCCCeeEecccccC------CCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeec
Q 044935 557 SLEDLHILGMESVKRVGNKFLG------VESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSID 630 (683)
Q Consensus 557 ~L~~L~L~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 630 (683)
+|+.|+++++. +..++..+.. ............+++|++|+++++ +++. +|. ...+++|+.|+|+
T Consensus 411 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~------ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 411 KMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKT------LPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp TCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSS------CCC-GGGCTTCCEEECC
T ss_pred cccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCc------CCC-cccCccCCEEecC
Confidence 99999998765 2111111000 000000111235788888876665 2432 343 3568999999999
Q ss_pred CCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 631 DCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 631 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
+|+..+..|..+..+++|+.|++++||
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCC
Confidence 998666556668889999999999987
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.1e-24 Score=232.66 Aligned_cols=342 Identities=15% Similarity=0.109 Sum_probs=213.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++++.+..+.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~-----N~l~~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS---DILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSH-----NKLVKISCH-- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH---HHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCS-----SCCCEEECC--
T ss_pred ccccEEECCCCcccccChh---hccccccccEEecCCCccC---CcChHHhhcccCCCEEecCC-----CceeecCcc--
Confidence 6899999999998876643 3345999999999999853 55678899999999999999 666778876
Q ss_pred CCCCCcEEeecCCCCccc--cchHHhcccCCcEEeccCccchhhccccccccccc--ceEecCCCcc--ccccccccCCC
Q 044935 352 NLLHLKYLSLFGESEIKR--LPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKL--MYLDNEGTNS--LRFLPVGIGEL 425 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~l 425 (683)
.+++|++|++++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..++.+
T Consensus 88 ~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccc
Confidence 89999999999998 654 67889999999999999987 443 356677777 8998888865 44555555543
Q ss_pred C--------------------------CCCCc------------------cccccCc-----------------------
Q 044935 426 I--------------------------SLRNL------------------GSLKKLN----------------------- 438 (683)
Q Consensus 426 ~--------------------------~L~~l------------------~~l~~L~----------------------- 438 (683)
+ +|+.+ ..+..++
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 3 11110 0011111
Q ss_pred ----cCCCeeEcCCCCCCChhHhHHhcc-----ccCCC--------------------------CCeEEEEeecCCCCCc
Q 044935 439 ----LLRECWICGRGGVSDAGEARRAEL-----EQKKN--------------------------LLKLGLHFCHSRDGDE 483 (683)
Q Consensus 439 ----~L~~l~i~~~~~~~~~~~~~~~~l-----~~~~~--------------------------L~~L~l~~~~~~~~~~ 483 (683)
.|+.+.+....- ....+..+ ..+++ |+.|++++|.+.....
T Consensus 244 ~~~~~L~~L~l~~n~l----~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKL----QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHTSSCSEEEEEEEEE----ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred hhhCcccEEEeecccc----cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc
Confidence 222222211100 00111111 22333 3333333333221110
Q ss_pred ----ccccCCCCchhHH-HHHhhhcCCCCCccEEEEeeecCCCC-ccCcchHhhccccceEeecCCCCCCCCCC--CCCC
Q 044935 484 ----EQAGRRENEEDEA-ERLLEALGPPPNLKELRIHEYRGRRN-VVPINWIMSLTNLRDLYLSYCRNCEHLPP--LGKL 555 (683)
Q Consensus 484 ----~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l 555 (683)
..+..+....+.+ ...+..++.+++|++|++++|.+... .+ |..+..+++|++|++++|.+.+.+|. +..+
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI-AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH-HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc-hHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 0011111111111 12345566667777777777766541 12 34566677777777777766653442 5667
Q ss_pred CCcceEEecCCCCeeEecccccCCCCCCCCcccccc-cccccccccccccccccccccccccccccCCcccEEeecCCCC
Q 044935 556 PSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAF-PKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPK 634 (683)
Q Consensus 556 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 634 (683)
++|+.|++++|. +.+..+ ..+ ++|+.|+++++ .++ .+|..+..+++|+.|++++|+
T Consensus 399 ~~L~~L~Ls~N~--------l~~~~~-------~~l~~~L~~L~Ls~N------~l~-~ip~~~~~l~~L~~L~L~~N~- 455 (520)
T 2z7x_B 399 KSLLSLNMSSNI--------LTDTIF-------RCLPPRIKVLDLHSN------KIK-SIPKQVVKLEALQELNVASNQ- 455 (520)
T ss_dssp TTCCEEECCSSC--------CCGGGG-------GSCCTTCCEEECCSS------CCC-CCCGGGGGCTTCCEEECCSSC-
T ss_pred ccCCEEECcCCC--------CCcchh-------hhhcccCCEEECCCC------ccc-ccchhhhcCCCCCEEECCCCc-
Confidence 777777775543 111111 122 57888866665 332 456667789999999999997
Q ss_pred CCcCCcC-CCCCCCCceEEEeCCcc
Q 044935 635 LKALPDR-LLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 635 l~~lp~~-l~~l~~L~~L~l~~c~~ 658 (683)
++.+|.. +..+++|+.|++++||-
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCHHHhccCCcccEEECcCCCC
Confidence 5578876 88899999999999973
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2.7e-24 Score=239.57 Aligned_cols=272 Identities=15% Similarity=0.081 Sum_probs=127.2
Q ss_pred ccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccc-cCCCCCC
Q 044935 350 IKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVG-IGELISL 428 (683)
Q Consensus 350 i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L 428 (683)
++.+++|++|++++|. +..+|..+.++++|++|++++|......|..+..+++|++|++++|.....+|.. ++.+++|
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4555555666665555 5555555555555666666555522222445555555666655555443333332 3334333
Q ss_pred CCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccC------CCCchhHHH-HH-h
Q 044935 429 RNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGR------RENEEDEAE-RL-L 500 (683)
Q Consensus 429 ~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~~~~~-~~-~ 500 (683)
+ .+.+....-.. ....+..+..+++|+.|++++|.+.+..+..+.. +....+... .. +
T Consensus 353 ~------------~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 353 R------------ELDLSHDDIET--SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp C------------EEECCSSCCCE--EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred C------------EEECCCCcccc--ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 3 33222211000 0000223445555555555555432111000000 000000000 00 1
Q ss_pred hhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCC-CC---CCCCCCCcceEEecCCCCeeEecccc
Q 044935 501 EALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEH-LP---PLGKLPSLEDLHILGMESVKRVGNKF 576 (683)
Q Consensus 501 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~---~l~~l~~L~~L~L~~~~~l~~~~~~~ 576 (683)
..+..+++|+.|++++|.... .+|..+..+++|++|++++|.+.+. ++ .++.+++|+.|++++|......+..
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~- 495 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDI--SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA- 495 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBT--TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-
T ss_pred hhhhCcccCCEEECCCCccCC--cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-
Confidence 124445555555555555444 3344455555555555555544331 11 1445555555555544321111111
Q ss_pred cCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCC
Q 044935 577 LGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGC 656 (683)
Q Consensus 577 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 656 (683)
...+++|+.|++++ +.+++..|..+..+++| .|++++|...+..|..+..+++|+.|++++|
T Consensus 496 -----------~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 496 -----------FTSLKMMNHVDLSH------NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp -----------TTTCTTCCEEECCS------SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred -----------hccccCCCEEECCC------CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 12456666664443 33444556666677777 7777777665555555666777888888877
Q ss_pred c
Q 044935 657 P 657 (683)
Q Consensus 657 ~ 657 (683)
|
T Consensus 558 ~ 558 (606)
T 3t6q_A 558 P 558 (606)
T ss_dssp C
T ss_pred C
Confidence 6
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=242.04 Aligned_cols=265 Identities=20% Similarity=0.151 Sum_probs=168.0
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i 350 (683)
..++++.++.+.+..+... .+.++++|++|++++|.. .....|..|.++++|++|+|++| .+..+ |..+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~---~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N-----~l~~~~p~~~ 93 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSS-----KIYFLHPDAF 93 (844)
T ss_dssp TTCCEEEEESCCCCEECSS---SCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTC-----CCCEECTTSS
T ss_pred CCcCEEECCCCcCCccChh---HCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCC-----cCcccCHhHc
Confidence 6899999999988765433 334599999999999853 22334778999999999999984 44444 7888
Q ss_pred cCCCCCcEEeecCCCCccccchH--HhcccCCcEEeccCccchhhc-c-cccccccccceEecCCCccccccccccCCC-
Q 044935 351 KNLLHLKYLSLFGESEIKRLPEV--LCELYNLERLDVRFCVNLREL-L-QGIGKLRKLMYLDNEGTNSLRFLPVGIGEL- 425 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~L~~~~~l~~l-p-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l- 425 (683)
+.+++|++|+|++|.....+|.. ++++++|++|+|++|. +..+ | ..++++++|++|++++|......|..++.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 99999999999999843446655 8889999999999887 4443 2 568889999999998886544444444433
Q ss_pred -CCCCCcc------------ccccCc------cCCCeeEcCCCCC-----------------------------------
Q 044935 426 -ISLRNLG------------SLKKLN------LLRECWICGRGGV----------------------------------- 451 (683)
Q Consensus 426 -~~L~~l~------------~l~~L~------~L~~l~i~~~~~~----------------------------------- 451 (683)
++|+.+. .+..+. .|+.+.+.+..-.
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 2332110 000000 1222222211000
Q ss_pred -----------------------CChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCC
Q 044935 452 -----------------------SDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPN 508 (683)
Q Consensus 452 -----------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
.......+..+..+++|+.|++++|.+... .+..+..+++
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~~l~~ 315 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-----------------ADEAFYGLDN 315 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-----------------CTTTTTTCSS
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-----------------ChHHhcCCCC
Confidence 000011122344455666666666553221 1345666777
Q ss_pred ccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCC
Q 044935 509 LKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGM 566 (683)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~ 566 (683)
|++|++++|.+.. +++..+..+++|+.|++++|.+....+. ++.+++|+.|+++++
T Consensus 316 L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 316 LQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCEEEEESCCCSC--CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCEEECCCCCCCc--cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 8888888777665 4466677777788888877765444333 667777777777664
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=4.4e-24 Score=241.17 Aligned_cols=132 Identities=23% Similarity=0.250 Sum_probs=106.4
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i 350 (683)
.+++++.+..+.+..++... +.++++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+|. .|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~-----n~l~~l~~~~~ 93 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN---FTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQH-----NELSQLSDKTF 93 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG---GGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCS-----SCCCCCCTTTT
T ss_pred CCCcEEECCCCCCCCcCHHH---HhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCC-----CccCccChhhh
Confidence 68899999999888776542 345899999999998753 55677889999999999998 55667776 58
Q ss_pred cCCCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccc
Q 044935 351 KNLLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSL 415 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 415 (683)
+.+++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|...
T Consensus 94 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 94 AFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred ccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 899999999999998 66665 56889999999999998744445667788999999999888543
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.4e-23 Score=218.30 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=221.3
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i 350 (683)
..++.+.+.++.+..+|..++ .++++|++|++++|.+. ...+..|..+++|++|++++ +.+..+| ..+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGF-----NAIRYLPPHVF 113 (390)
T ss_dssp CCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCS-----SCCCCCCTTTT
T ss_pred CCceEEEecCCchhhCChhHh---cccccCcEEECCCCccc---ccChhhccCCCCcCEEECCC-----CCCCcCCHHHh
Confidence 678888888888887776543 34888999999998753 44556788899999999998 4455554 557
Q ss_pred cCCCCCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhc-ccccccccccceEecCCCccccccccccCCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL 428 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 428 (683)
+.+++|++|++++|. +..+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++|.. ..++ ++.+++
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~l~~- 187 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPS- 187 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC-SBCC--GGGCTT-
T ss_pred cCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC-Cccc--cccccc-
Confidence 889999999999988 8888876 4789999999999887 5444 45678899999999988843 3322 222222
Q ss_pred CCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCC
Q 044935 429 RNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPN 508 (683)
Q Consensus 429 ~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
|+.+.+.... ...+....+|+.|++++|.+... + ...+++
T Consensus 188 -----------L~~L~l~~n~---------l~~~~~~~~L~~L~l~~n~l~~~------------------~--~~~~~~ 227 (390)
T 3o6n_A 188 -----------LFHANVSYNL---------LSTLAIPIAVEELDASHNSINVV------------------R--GPVNVE 227 (390)
T ss_dssp -----------CSEEECCSSC---------CSEEECCSSCSEEECCSSCCCEE------------------E--CCCCSS
T ss_pred -----------cceeeccccc---------ccccCCCCcceEEECCCCeeeec------------------c--cccccc
Confidence 2222222110 11234456899999998874321 1 123579
Q ss_pred ccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcc
Q 044935 509 LKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSS 587 (683)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 587 (683)
|+.|++++|.+.. +.++..+++|++|++++|.+.+..|. ++.+++|+.|+++++. +..++..+
T Consensus 228 L~~L~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----------- 291 (390)
T 3o6n_A 228 LTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG----------- 291 (390)
T ss_dssp CCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS-----------
T ss_pred ccEEECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc-----------
Confidence 9999999999877 45788999999999999987776555 8899999999998764 33332221
Q ss_pred cccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 588 VIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 588 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
..+|+|+.|+++++. +.. +|..+..+++|+.|++++|+. +.+| +..+++|+.|++++|+-
T Consensus 292 -~~l~~L~~L~L~~n~-l~~------~~~~~~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 -QPIPTLKVLDLSHNH-LLH------VERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp -SCCTTCCEEECCSSC-CCC------CGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSCE
T ss_pred -CCCCCCCEEECCCCc-cee------cCccccccCcCCEEECCCCcc-ceeC--chhhccCCEEEcCCCCc
Confidence 258999999877763 443 455567899999999999984 5565 56789999999999984
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.1e-23 Score=221.04 Aligned_cols=311 Identities=22% Similarity=0.263 Sum_probs=161.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+.+.++.+..++. +..+++|++|++++|.+. . ++. +.++++|++|++++ +.+..++. ++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-----~~~l~~L~~L~Ls~n~l~---~-~~~-~~~l~~L~~L~l~~-----n~l~~~~~-~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLT---D-ITP-LKNLTKLVDILMNN-----NQIADITP-LA 109 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-----GGGCTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEECCS-----SCCCCCGG-GT
T ss_pred ccccEEecCCCCCccCcc-----hhhhcCCCEEECCCCccC---C-chh-hhccccCCEEECCC-----CccccChh-hc
Confidence 345555555555544432 223566666666666542 1 222 55566666666655 33334443 55
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc--------------------ccccccccceEecCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ--------------------GIGKLRKLMYLDNEG 411 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--------------------~i~~l~~L~~L~l~~ 411 (683)
.+++|++|++++|. +..+|. +.++++|++|++++|. +..+|. .+.++++|++|++++
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcC
Confidence 56666666666555 555554 5556666666665554 333331 244455555555555
Q ss_pred CccccccccccCCCCCCCCc----------cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC
Q 044935 412 TNSLRFLPVGIGELISLRNL----------GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG 481 (683)
Q Consensus 412 ~~~~~~~p~~~~~l~~L~~l----------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 481 (683)
|. +..++ .+..+++|+.+ ..+..++.|+.+.+.+..-.. ...+..+++|+.|++++|.+.+.
T Consensus 187 n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 187 NK-VSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD------IGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp SC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCCC
T ss_pred Cc-CCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc------chhhhcCCCCCEEECCCCccccc
Confidence 53 22222 12333333211 112222233333332211100 01233444445555444442211
Q ss_pred CcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceE
Q 044935 482 DEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDL 561 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 561 (683)
+ .+..+++|+.|++++|.+.. +++ +..+++|+.|++++|.+.+ ++.++.+++|+.|
T Consensus 259 ------------------~-~~~~l~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L 314 (466)
T 1o6v_A 259 ------------------A-PLSGLTKLTELKLGANQISN--ISP--LAGLTALTNLELNENQLED-ISPISNLKNLTYL 314 (466)
T ss_dssp ------------------G-GGTTCTTCSEEECCSSCCCC--CGG--GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEE
T ss_pred ------------------h-hhhcCCCCCEEECCCCccCc--ccc--ccCCCccCeEEcCCCcccC-chhhcCCCCCCEE
Confidence 1 14556666666666666555 322 5566667777776665443 3336666677777
Q ss_pred EecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcC
Q 044935 562 HILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDR 641 (683)
Q Consensus 562 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 641 (683)
++++|. +.+..+ ...+++|+.|++.+|. ++.. ..+..+++|+.|++++|+..+..|
T Consensus 315 ~L~~n~--------l~~~~~------~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~-- 370 (466)
T 1o6v_A 315 TLYFNN--------ISDISP------VSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQISDLTP-- 370 (466)
T ss_dssp ECCSSC--------CSCCGG------GGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred ECcCCc--------CCCchh------hccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCccCccch--
Confidence 775543 222111 2357788888766653 3332 246678899999999887655444
Q ss_pred CCCCCCCceEEEeCCc
Q 044935 642 LLQKTTLQRLEIYGCP 657 (683)
Q Consensus 642 l~~l~~L~~L~l~~c~ 657 (683)
+..+++|+.|++++|+
T Consensus 371 ~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 371 LANLTRITQLGLNDQA 386 (466)
T ss_dssp GTTCTTCCEEECCCEE
T ss_pred hhcCCCCCEEeccCCc
Confidence 6778899999998886
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=5.9e-24 Score=216.55 Aligned_cols=231 Identities=23% Similarity=0.288 Sum_probs=160.3
Q ss_pred CCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccccccccccc
Q 044935 325 LTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKL 404 (683)
Q Consensus 325 l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 404 (683)
..+++.|+|++ +.+..+|..++.+++|++|++++|. +..+|..++++++|++|++++|. +..+|..++++++|
T Consensus 80 ~~~l~~L~L~~-----n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRS-----VPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEES-----SCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTC
T ss_pred ccceeEEEccC-----CCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCC
Confidence 46677777777 5556777777778888888888877 66777777888888888888776 56777778888888
Q ss_pred ceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcc
Q 044935 405 MYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEE 484 (683)
Q Consensus 405 ~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 484 (683)
++|++++|.....+|..++... ....+..+++|+.|++++|.+.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~-------------------------------~~~~~~~l~~L~~L~L~~n~l~----- 196 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTD-------------------------------ASGEHQGLVNLQSLRLEWTGIR----- 196 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC--------------------------------CCCEEESTTCCEEEEEEECCC-----
T ss_pred CEEECCCCCCccccChhHhhcc-------------------------------chhhhccCCCCCEEECcCCCcC-----
Confidence 8888887766666665543210 0012445677777777777643
Q ss_pred cccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEe
Q 044935 485 QAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHI 563 (683)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L 563 (683)
.++..++.+++|++|++++|.+.. + |..+..+++|++|++++|...+.+|. ++.+++|+.|++
T Consensus 197 -------------~lp~~l~~l~~L~~L~L~~N~l~~--l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 197 -------------SLPASIANLQNLKSLKIRNSPLSA--L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp -------------CCCGGGGGCTTCCEEEEESSCCCC--C-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred -------------cchHhhcCCCCCCEEEccCCCCCc--C-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 224455666777777777777665 5 44566777777777777766666655 566666666666
Q ss_pred cCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCC
Q 044935 564 LGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLL 643 (683)
Q Consensus 564 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 643 (683)
++|.. .+.+|..+..+++|+.|+|++|+.++.+|..+.
T Consensus 261 ~~n~~------------------------------------------~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 261 KDCSN------------------------------------------LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp TTCTT------------------------------------------CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred CCCCc------------------------------------------hhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 44332 122444566788899999999888888998888
Q ss_pred CCCCCceEEEeCC
Q 044935 644 QKTTLQRLEIYGC 656 (683)
Q Consensus 644 ~l~~L~~L~l~~c 656 (683)
++++|+.+++..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 8899988888754
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.1e-23 Score=223.78 Aligned_cols=334 Identities=14% Similarity=0.078 Sum_probs=220.3
Q ss_pred EEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCCC
Q 044935 277 LMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLLH 355 (683)
Q Consensus 277 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~~ 355 (683)
+.........+|. + .++|++|++++|.+. ...|..|.++++|++|++++|.+. ..+ |..++.+++
T Consensus 15 ~~c~~~~l~~lp~-l------~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~----~~i~~~~~~~l~~ 80 (455)
T 3v47_A 15 AICINRGLHQVPE-L------PAHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPG----LVIRNNTFRGLSS 80 (455)
T ss_dssp EECCSSCCSSCCC-C------CTTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTT----CEECTTTTTTCTT
T ss_pred cCcCCCCcccCCC-C------CCccCEEEecCCccC---cCChhHhccCccccEEECcCCccc----ceECccccccccc
Confidence 4444555666665 2 578999999999863 446778999999999999995331 244 567899999
Q ss_pred CcEEeecCCCCccc-cchHHhcccCCcEEeccCccchhhcccc--cccccccceEecCCCccccccccc-cCCCCCCCCc
Q 044935 356 LKYLSLFGESEIKR-LPEVLCELYNLERLDVRFCVNLRELLQG--IGKLRKLMYLDNEGTNSLRFLPVG-IGELISLRNL 431 (683)
Q Consensus 356 L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l 431 (683)
|++|++++|. +.. .|..++++++|++|++++|......|.. +..+++|++|++++|......|.. ++.+++|+.+
T Consensus 81 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 81 LIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp CCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 9999999999 554 5788999999999999999844445555 899999999999999665554654 6666666533
Q ss_pred c------------ccccC--ccCCCeeEcCCCCCC----ChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCch
Q 044935 432 G------------SLKKL--NLLRECWICGRGGVS----DAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEE 493 (683)
Q Consensus 432 ~------------~l~~L--~~L~~l~i~~~~~~~----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 493 (683)
. .+..+ ..|+.+.+....-.. .........+..+++|+.|++++|.+.+.
T Consensus 160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~------------ 227 (455)
T 3v47_A 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES------------ 227 (455)
T ss_dssp ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH------------
T ss_pred eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc------------
Confidence 1 00000 111111111110000 00001111223445667777766653211
Q ss_pred hHHHHHhhhcCCCCCccEEEEeeecCCCCcc--------CcchHh--hccccceEeecCCCCCCCCCC-CCCCCCcceEE
Q 044935 494 DEAERLLEALGPPPNLKELRIHEYRGRRNVV--------PINWIM--SLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLH 562 (683)
Q Consensus 494 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~--~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~ 562 (683)
...........++|+.|+++++......+ .+..+. ..++|+.|++++|.+.+..|. ++.+++|+.|+
T Consensus 228 --~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 228 --MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305 (455)
T ss_dssp --HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred --chhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEE
Confidence 11111112234677777777664332111 011122 236899999999988877776 89999999999
Q ss_pred ecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCC
Q 044935 563 ILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRL 642 (683)
Q Consensus 563 L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l 642 (683)
++++..-...+..+ ..+++|++|+++++ .+.+..|..+..+++|+.|++++|......|..+
T Consensus 306 Ls~n~l~~~~~~~~------------~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 306 LAQNEINKIDDNAF------------WGLTHLLKLNLSQN------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CTTSCCCEECTTTT------------TTCTTCCEEECCSS------CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCcccccChhHh------------cCcccCCEEECCCC------ccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 98765332222222 25889999976655 4445566778889999999999998766668889
Q ss_pred CCCCCCceEEEeCCc
Q 044935 643 LQKTTLQRLEIYGCP 657 (683)
Q Consensus 643 ~~l~~L~~L~l~~c~ 657 (683)
..+++|++|++++|.
T Consensus 368 ~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 368 LGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cccccccEEECCCCc
Confidence 999999999999986
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=5.9e-24 Score=232.16 Aligned_cols=133 Identities=18% Similarity=0.241 Sum_probs=108.6
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNL 353 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l 353 (683)
+.+.+.++.+..+|..+ .++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+ |..++.+
T Consensus 3 ~~l~ls~n~l~~ip~~~------~~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL------SQKTTILNISQNYIS---ELWTSDILSLSKLRILIISH-----NRIQYLDISVFKFN 68 (520)
T ss_dssp CEEECTTSCCSSCCCSC------CTTCSEEECCSSCCC---CCCHHHHTTCTTCCEEECCS-----SCCCEEEGGGGTTC
T ss_pred ceEecCCCCcccccccc------cccccEEECCCCccc---ccChhhccccccccEEecCC-----CccCCcChHHhhcc
Confidence 46777788888887655 378999999999863 45667899999999999999 555555 7789999
Q ss_pred CCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhh--cccccccccccceEecCCCccccccccccCCCCCC
Q 044935 354 LHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRE--LLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL 428 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 428 (683)
++|++|++++|. +..+|.. .+++|++|++++|. +.. +|..++++++|++|++++|.... ..++.+++|
T Consensus 69 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L 138 (520)
T 2z7x_B 69 QELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL 138 (520)
T ss_dssp TTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS
T ss_pred cCCCEEecCCCc-eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch---hhccccccc
Confidence 999999999998 8899986 89999999999998 543 67899999999999999986433 234444444
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.8e-23 Score=230.26 Aligned_cols=351 Identities=15% Similarity=0.091 Sum_probs=195.8
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
+.++.+.+..+.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+|..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~-----N~l~~lp~~-- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP---DISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSH-----NRLQNISCC-- 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG---GTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTT-----SCCCEECSC--
T ss_pred CCcCEEECCCCCccccChh---hhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCC-----CcCCccCcc--
Confidence 5788888888887766642 2345888888888888753 44567788888888888888 556677776
Q ss_pred CCCCCcEEeecCCCCcccc--chHHhcccCCcEEeccCccchhhccccccccccc--ceEecCCCcc--ccccccccCCC
Q 044935 352 NLLHLKYLSLFGESEIKRL--PEVLCELYNLERLDVRFCVNLRELLQGIGKLRKL--MYLDNEGTNS--LRFLPVGIGEL 425 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~l 425 (683)
.+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+..+
T Consensus 119 ~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCccccccc
Confidence 78888888888888 6654 4678888888888888876 433 244555555 8888888755 44445544443
Q ss_pred CC--CC----------Cc--cccccCccCCCeeEcCCC----------------------------CCCChhHhHHhccc
Q 044935 426 IS--LR----------NL--GSLKKLNLLRECWICGRG----------------------------GVSDAGEARRAELE 463 (683)
Q Consensus 426 ~~--L~----------~l--~~l~~L~~L~~l~i~~~~----------------------------~~~~~~~~~~~~l~ 463 (683)
.. +. .+ ..+..++.|+.+.+.... -........+.. .
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~ 273 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-F 273 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-H
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-h
Confidence 20 00 00 000111122222222110 000000001111 1
Q ss_pred cCCCCCeEEEEeecCCCCCcccc-----cCCC-------------CchhHHHHHhh------------------hcCCCC
Q 044935 464 QKKNLLKLGLHFCHSRDGDEEQA-----GRRE-------------NEEDEAERLLE------------------ALGPPP 507 (683)
Q Consensus 464 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~------------------~~~~~~ 507 (683)
...+|+.|++++|.+.+..+... .... ........... ....++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 22366677777766553322211 0000 00000111000 004455
Q ss_pred CccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCC--C-CCCCCCCcceEEecCCCCeeEecc----------
Q 044935 508 NLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHL--P-PLGKLPSLEDLHILGMESVKRVGN---------- 574 (683)
Q Consensus 508 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~l~~l~~L~~L~L~~~~~l~~~~~---------- 574 (683)
+|++|++++|.+.. ..|..+..+++|++|++++|.+.+.. | .++.+++|+.|+++++..-..++.
T Consensus 354 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 354 SFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 66666666666554 22455556666666666666544311 1 255566666666655432110111
Q ss_pred -------cccCCCCCCCCcccccc-cccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcC-CCCC
Q 044935 575 -------KFLGVESDTDGSSVIAF-PKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDR-LLQK 645 (683)
Q Consensus 575 -------~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l 645 (683)
.+.+..+ ..+ ++|+.|+++++ .++ .+|..+..+++|+.|++++|. ++.+|.. +..+
T Consensus 432 ~L~l~~n~l~~~~~-------~~l~~~L~~L~L~~N-~l~------~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 496 (562)
T 3a79_B 432 VLNLSSNMLTGSVF-------RCLPPKVKVLDLHNN-RIM------SIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRL 496 (562)
T ss_dssp EEECCSSCCCGGGG-------SSCCTTCSEEECCSS-CCC------CCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTC
T ss_pred EEECCCCCCCcchh-------hhhcCcCCEEECCCC-cCc------ccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcC
Confidence 1111000 123 46777755554 233 356566689999999999987 5578876 8889
Q ss_pred CCCceEEEeCCc
Q 044935 646 TTLQRLEIYGCP 657 (683)
Q Consensus 646 ~~L~~L~l~~c~ 657 (683)
++|+.|++++||
T Consensus 497 ~~L~~L~l~~N~ 508 (562)
T 3a79_B 497 TSLQYIWLHDNP 508 (562)
T ss_dssp TTCCCEECCSCC
T ss_pred CCCCEEEecCCC
Confidence 999999999987
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1e-22 Score=218.58 Aligned_cols=295 Identities=22% Similarity=0.291 Sum_probs=203.5
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+.+.++.+..++. + .++++|++|++++|.+. . ++. +.++++|++|++++ +.+..++. +.
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~----~~l~~L~~L~l~~n~l~---~-~~~-~~~l~~L~~L~L~~-----n~l~~~~~-~~ 131 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-L----KNLTKLVDILMNNNQIA---D-ITP-LANLTNLTGLTLFN-----NQITDIDP-LK 131 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-G----TTCTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEECCS-----SCCCCCGG-GT
T ss_pred cCCCEEECCCCccCCchh-h----hccccCCEEECCCCccc---c-Chh-hcCCCCCCEEECCC-----CCCCCChH-Hc
Confidence 567777777777666554 2 33777777777777643 2 222 66777777777776 33344443 56
Q ss_pred CCCCCcEEeecCCCCccccch--------------------HHhcccCCcEEeccCccchhhcccccccccccceEecCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPE--------------------VLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEG 411 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~--------------------~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 411 (683)
.+++|++|++++|. +..+|. .+.++++|++|++++|. +..++ .+..+++|++|++++
T Consensus 132 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 132 NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp TCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCS
T ss_pred CCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecC
Confidence 66666666666665 444332 26778889999999887 66654 588999999999999
Q ss_pred CccccccccccCCCCCCCC----------ccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC
Q 044935 412 TNSLRFLPVGIGELISLRN----------LGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG 481 (683)
Q Consensus 412 ~~~~~~~p~~~~~l~~L~~----------l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 481 (683)
|......| ++.+++|+. ++.+..++.|+.+.+.+..-... ..+..+++|+.|++++|.+.+.
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCCC
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc------hhhhcCCCCCEEECCCCccCcc
Confidence 96544333 555555552 34556667777777765432221 1277889999999999985432
Q ss_pred CcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceE
Q 044935 482 DEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDL 561 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 561 (683)
+ .+..+++|+.|++++|.+.. +++ +..+++|+.|++++|.+.+..| ++.+++|+.|
T Consensus 281 ------------------~-~~~~l~~L~~L~L~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 336 (466)
T 1o6v_A 281 ------------------S-PLAGLTALTNLELNENQLED--ISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL 336 (466)
T ss_dssp ------------------G-GGTTCTTCSEEECCSSCCSC--CGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred ------------------c-cccCCCccCeEEcCCCcccC--chh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEe
Confidence 2 26778999999999999877 533 7899999999999998766544 8899999999
Q ss_pred EecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc
Q 044935 562 HILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD 640 (683)
Q Consensus 562 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 640 (683)
++++|. +... . ....+++|+.|++++|. +.+..| +..+++|+.|++++|+... +|.
T Consensus 337 ~l~~n~-l~~~-------~------~l~~l~~L~~L~l~~n~------l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 337 FFYNNK-VSDV-------S------SLANLTNINWLSAGHNQ------ISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp ECCSSC-CCCC-------G------GGTTCTTCCEEECCSSC------CCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred ECCCCc-cCCc-------h------hhccCCCCCEEeCCCCc------cCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 998764 2211 1 13368999999776663 333344 6789999999999998543 444
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=8.3e-23 Score=210.77 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=210.3
Q ss_pred ccCceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc
Q 044935 270 EQKKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN 349 (683)
Q Consensus 270 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~ 349 (683)
..+.++.+.+.++.+..++. +.++++|++|++++|.+.. ++ .+.++++|++|++++ +.+..++.
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~----~~-~~~~l~~L~~L~l~~-----n~i~~~~~- 127 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITD----IS-ALQNLTNLRELYLNE-----DNISDISP- 127 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC----CG-GGTTCTTCSEEECTT-----SCCCCCGG-
T ss_pred hcCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccC----ch-HHcCCCcCCEEECcC-----CcccCchh-
Confidence 34789999999998887765 3459999999999998642 34 489999999999999 55566766
Q ss_pred ccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 350 IKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 350 i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
+..+++|++|++++|..+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.. ..++. +..+
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l---- 198 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASL---- 198 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGC----
T ss_pred hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcc-ccccc-ccCC----
Confidence 88999999999999975776666 9999999999999997 666654 88999999999999843 33332 3322
Q ss_pred CccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCc
Q 044935 430 NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNL 509 (683)
Q Consensus 430 ~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 509 (683)
+.|+.+.+....-.. . ..+..+++|+.|++++|.+... + .+..+++|
T Consensus 199 --------~~L~~L~l~~n~l~~-~-----~~~~~~~~L~~L~l~~n~l~~~------------------~-~~~~l~~L 245 (347)
T 4fmz_A 199 --------TSLHYFTAYVNQITD-I-----TPVANMTRLNSLKIGNNKITDL------------------S-PLANLSQL 245 (347)
T ss_dssp --------TTCCEEECCSSCCCC-C-----GGGGGCTTCCEEECCSSCCCCC------------------G-GGTTCTTC
T ss_pred --------CccceeecccCCCCC-C-----chhhcCCcCCEEEccCCccCCC------------------c-chhcCCCC
Confidence 233333333221111 1 1167889999999999985432 2 27788999
Q ss_pred cEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccc
Q 044935 510 KELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVI 589 (683)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (683)
++|++++|.+.. + ..+..+++|++|++++|.+.+ ++.+..+++|+.|++++|........ ...
T Consensus 246 ~~L~l~~n~l~~--~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~ 308 (347)
T 4fmz_A 246 TWLEIGTNQISD--I--NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDME------------VIG 308 (347)
T ss_dssp CEEECCSSCCCC--C--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHH------------HHH
T ss_pred CEEECCCCccCC--C--hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChh------------Hhh
Confidence 999999998877 4 467899999999999997655 56788999999999988752111111 123
Q ss_pred cccccccccccccccccccccccccccccccCCcccEEeecCCCC
Q 044935 590 AFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPK 634 (683)
Q Consensus 590 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 634 (683)
.+++|+.|++++|+ ++. ..| +..+++|+.|++++|+.
T Consensus 309 ~l~~L~~L~L~~n~-l~~-----~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 309 GLTNLTTLFLSQNH-ITD-----IRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp TCTTCSEEECCSSS-CCC-----CGG--GGGCTTCSEESSSCC--
T ss_pred ccccCCEEEccCCc-ccc-----ccC--hhhhhccceeehhhhcc
Confidence 58999999777764 333 333 66899999999999974
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.6e-23 Score=227.50 Aligned_cols=304 Identities=16% Similarity=0.129 Sum_probs=218.7
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i 350 (683)
..++.+.+.++.+..+|..++ .++++|++|++++|.+. ...|..|..+++|++|+|++ +.+..+| ..+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~ 119 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGF-----NAIRYLPPHVF 119 (597)
T ss_dssp CCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCS-----SCCCCCCTTTT
T ss_pred CCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCC-----CcCCCCCHHHH
Confidence 567788888877777776543 34888999999988753 44556788889999999988 4445555 446
Q ss_pred cCCCCCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
+.+++|++|+|++|. +..+|.. ++++++|++|+|++|......|..++.+++|++|++++|.. ..++ ++.+++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~-- 193 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPS-- 193 (597)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTT--
T ss_pred cCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhh--
Confidence 888999999999988 7787765 48889999999998873333445688889999999988843 3332 222222
Q ss_pred CccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCc
Q 044935 430 NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNL 509 (683)
Q Consensus 430 ~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 509 (683)
|+.+.+... ....+....+|+.|++++|.+... +. ..+++|
T Consensus 194 ----------L~~L~l~~n---------~l~~l~~~~~L~~L~ls~n~l~~~------------------~~--~~~~~L 234 (597)
T 3oja_B 194 ----------LFHANVSYN---------LLSTLAIPIAVEELDASHNSINVV------------------RG--PVNVEL 234 (597)
T ss_dssp ----------CSEEECCSS---------CCSEEECCTTCSEEECCSSCCCEE------------------EC--SCCSCC
T ss_pred ----------hhhhhcccC---------ccccccCCchhheeeccCCccccc------------------cc--ccCCCC
Confidence 222222211 011234556899999998874321 11 123689
Q ss_pred cEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCccc
Q 044935 510 KELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSV 588 (683)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 588 (683)
+.|++++|.+.. +.++..+++|+.|++++|.+.+..|. ++.+++|+.|+++++. +..++..+
T Consensus 235 ~~L~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------ 297 (597)
T 3oja_B 235 TILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------ 297 (597)
T ss_dssp CEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------
T ss_pred CEEECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------
Confidence 999999999876 57789999999999999988777665 8999999999998764 33332211
Q ss_pred ccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 589 IAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 589 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
..+|+|+.|++++|. +. .+|..+..+++|+.|+|++|+. ..+| +..+++|+.|++++||-
T Consensus 298 ~~l~~L~~L~Ls~N~-l~------~i~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 298 QPIPTLKVLDLSHNH-LL------HVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SCCTTCCEEECCSSC-CC------CCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSCE
T ss_pred ccCCCCcEEECCCCC-CC------ccCcccccCCCCCEEECCCCCC-CCcC--hhhcCCCCEEEeeCCCC
Confidence 258999999877763 33 3556677899999999999985 4455 55689999999999984
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=223.93 Aligned_cols=299 Identities=21% Similarity=0.171 Sum_probs=220.8
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i 350 (683)
..++.+.+.++.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+|. .+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD---EFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRS-----NRLKLIPLGVF 100 (477)
T ss_dssp TTCSEEECCSSCCCEECTT---TTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCS-----SCCCSCCTTSS
T ss_pred CCCcEEECCCCccceECHh---HccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCC-----CcCCccCcccc
Confidence 5789999999998876543 3345999999999999853 55678899999999999999 56677775 47
Q ss_pred cCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccc-cccCCCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLP-VGIGELISLR 429 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~ 429 (683)
..+++|++|++++|......|..+.++++|++|++++|......|..+..+++|++|++++|.. ..+| ..+..+++|+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLI 179 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCc
Confidence 8999999999999994444567799999999999999984344456789999999999999954 4444 3345444443
Q ss_pred CccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCc
Q 044935 430 NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNL 509 (683)
Q Consensus 430 ~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 509 (683)
. +.+.... .....+..+..+++|+.|++++|...+. ++.......+|
T Consensus 180 ~------------L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~~~~L 226 (477)
T 2id5_A 180 V------------LRLRHLN----INAIRDYSFKRLYRLKVLEISHWPYLDT-----------------MTPNCLYGLNL 226 (477)
T ss_dssp E------------EEEESCC----CCEECTTCSCSCTTCCEEEEECCTTCCE-----------------ECTTTTTTCCC
T ss_pred E------------EeCCCCc----CcEeChhhcccCcccceeeCCCCccccc-----------------cCcccccCccc
Confidence 2 2332211 1111224567889999999999874322 23334445699
Q ss_pred cEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCccc
Q 044935 510 KELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSV 588 (683)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 588 (683)
++|++++|.+.. +++..+..+++|+.|++++|.+....+. +..+++|+.|++.++..-...+.. .
T Consensus 227 ~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------~ 292 (477)
T 2id5_A 227 TSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA------------F 292 (477)
T ss_dssp SEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT------------B
T ss_pred cEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH------------h
Confidence 999999999887 7567888999999999999987765554 889999999999776432222222 2
Q ss_pred ccccccccccccccccccccccccccccccccCCcccEEeecCCCCC
Q 044935 589 IAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKL 635 (683)
Q Consensus 589 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 635 (683)
..+++|+.|+++++ .++...+..+..+++|+.|++++|+..
T Consensus 293 ~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 293 RGLNYLRVLNVSGN------QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSS------CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCcccCCEEECCCC------cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 25889999976655 344444556778999999999999864
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=5.4e-23 Score=230.60 Aligned_cols=352 Identities=15% Similarity=0.087 Sum_probs=226.2
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i 350 (683)
..++++.++.+.+..++... |.++++|++|++++|.+. ...+.+|.++++|++|+|++ +.++.+|. .|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~---f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~-----N~l~~l~~~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTG-----NPIQSLALGAF 120 (635)
T ss_dssp TTCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTT-----CCCCEECGGGG
T ss_pred cCCCEEEeeCCCCCCCCHHH---HhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccC-----CcCCCCCHHHh
Confidence 57899999999998877543 345999999999999863 44567799999999999999 66677875 58
Q ss_pred cCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchh--hcccccccccccceEecCCCccccccccccCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLR--ELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELIS 427 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 427 (683)
+++++|++|++++|. +..+|. .++++++|++|++++|. +. ..|..++.+++|++|++++|......|..+..+.+
T Consensus 121 ~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 121 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred cCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 999999999999998 787775 48999999999999987 54 35778899999999999998543333333222111
Q ss_pred CC----------------------------------------------Ccc-----------------------------
Q 044935 428 LR----------------------------------------------NLG----------------------------- 432 (683)
Q Consensus 428 L~----------------------------------------------~l~----------------------------- 432 (683)
++ .+.
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 11 000
Q ss_pred --------------------------------------------ccccCccCCCeeEcCCCC--CCC-----h-------
Q 044935 433 --------------------------------------------SLKKLNLLRECWICGRGG--VSD-----A------- 454 (683)
Q Consensus 433 --------------------------------------------~l~~L~~L~~l~i~~~~~--~~~-----~------- 454 (683)
.+.....++.+.+..... ... .
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 358 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccc
Confidence 000000011111110000 000 0
Q ss_pred -hHhHHhccccCCCCCeEEEEeecCCCCC--ccc------ccCCCCchhH-------------------------HHHHh
Q 044935 455 -GEARRAELEQKKNLLKLGLHFCHSRDGD--EEQ------AGRRENEEDE-------------------------AERLL 500 (683)
Q Consensus 455 -~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~------~~~~~~~~~~-------------------------~~~~~ 500 (683)
..........+++|+.|+++.|.+.... +.. ........+. .....
T Consensus 359 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 359 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccc
Confidence 0000011224567777777766542100 000 0000000000 00012
Q ss_pred hhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCC-CCC-CCCCCCcceEEecCCCCeeEe-ccccc
Q 044935 501 EALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEH-LPP-LGKLPSLEDLHILGMESVKRV-GNKFL 577 (683)
Q Consensus 501 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~-l~~l~~L~~L~L~~~~~l~~~-~~~~~ 577 (683)
..+..+++++.++++.|.... .++..+..+++|+.|++++|..... .|. ++.+++|+.|+|++|. ++.+ +..+
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f- 514 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF- 514 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-
T ss_pred ccccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHH-
Confidence 234456677777777766655 4466677788888888888875443 343 7888999999997764 3332 2222
Q ss_pred CCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCC-CCCceEEEeCC
Q 044935 578 GVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQK-TTLQRLEIYGC 656 (683)
Q Consensus 578 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c 656 (683)
..+++|++|++++ +.+++..|..+..+++|+.|+|++|+..+..|..+.++ ++|+.|++++|
T Consensus 515 -----------~~l~~L~~L~Ls~------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 515 -----------NSLSSLQVLNMSH------NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp -----------TTCTTCCEEECTT------SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred -----------cCCCCCCEEECCC------CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 2588999996555 44555566778899999999999998777778788777 68999999988
Q ss_pred c
Q 044935 657 P 657 (683)
Q Consensus 657 ~ 657 (683)
|
T Consensus 578 p 578 (635)
T 4g8a_A 578 D 578 (635)
T ss_dssp C
T ss_pred C
Confidence 7
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=5.6e-22 Score=218.29 Aligned_cols=344 Identities=15% Similarity=0.119 Sum_probs=206.2
Q ss_pred eEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccC
Q 044935 274 VLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKN 352 (683)
Q Consensus 274 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~ 352 (683)
.+.+.+.++.+..+|..+ .++|+.|++++|.+. ...|..|.++++|++|+|++ +.+..+ |..++.
T Consensus 33 ~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~ 98 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL------PPRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSH-----NRIRSLDFHVFLF 98 (562)
T ss_dssp CCEEECTTSCCCSCCTTS------CTTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCS-----CCCCEECTTTTTT
T ss_pred CcEEEcCCCCCccCCCCC------CCCcCEEECCCCCcc---ccChhhhccCCCccEEECCC-----CCCCcCCHHHhCC
Confidence 378888888888888765 478999999999864 44567899999999999999 555566 677999
Q ss_pred CCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhc--ccccccccccceEecCCCccccccccccCCCCCC--
Q 044935 353 LLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLREL--LQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL-- 428 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L-- 428 (683)
+++|++|++++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++|
T Consensus 99 l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 171 (562)
T 3a79_B 99 NQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHL 171 (562)
T ss_dssp CTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCE
T ss_pred CCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhcee
Confidence 9999999999999 8899986 89999999999998 6655 4789999999999999985432 233333333
Q ss_pred CCc--------------cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCC---------------
Q 044935 429 RNL--------------GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSR--------------- 479 (683)
Q Consensus 429 ~~l--------------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------------- 479 (683)
+.+ ..+..+.. +.+.+. ..............+..+++|+.+++++|...
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~-l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNT-TVLHLV-FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCE-EEEEEE-ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eEEEeecccccccccCcccccccCc-ceEEEE-ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 211 00111100 000110 00000000000111223344444444443100
Q ss_pred CCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchH------------------------------
Q 044935 480 DGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWI------------------------------ 529 (683)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------------------ 529 (683)
....-.+.......+....++.... .++|++|++++|.+... + |..+
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~-i-p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITER-I-DREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEECSC-C-CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEeecc-c-cchhhhcccccchheehhhcccceeecChhhhhh
Confidence 0000000000111223333343332 23778888877765521 2 2211
Q ss_pred -----------------------hhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCC
Q 044935 530 -----------------------MSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDG 585 (683)
Q Consensus 530 -----------------------~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 585 (683)
..+++|++|++++|.+.+..|. ++.+++|+.|+++++. +..++...
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--------- 396 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVA--------- 396 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHH---------
T ss_pred hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccch---------
Confidence 4667889999998887775555 8889999999997753 22111000
Q ss_pred cccccccccccccccccc-------------------cccccccccccccccccC-CcccEEeecCCCCCCcCCcCCCCC
Q 044935 586 SSVIAFPKLKRLAFHTME-------------------ELEEWDFRTAIKGEIIIM-PRLSSLSIDDCPKLKALPDRLLQK 645 (683)
Q Consensus 586 ~~~~~~~~L~~L~l~~~~-------------------~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l 645 (683)
.....+++|+.|+++++. +++.+.+++..|. .+ ++|+.|++++|. ++.+|..+..+
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~~L~~L~L~~N~-l~~ip~~~~~l 472 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNNR-IMSIPKDVTHL 472 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS---SCCTTCSEEECCSSC-CCCCCTTTTSS
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh---hhcCcCCEEECCCCc-CcccChhhcCC
Confidence 001124444444443332 1122222233333 33 688888888885 56788877788
Q ss_pred CCCceEEEeCCc
Q 044935 646 TTLQRLEIYGCP 657 (683)
Q Consensus 646 ~~L~~L~l~~c~ 657 (683)
++|+.|++++|.
T Consensus 473 ~~L~~L~L~~N~ 484 (562)
T 3a79_B 473 QALQELNVASNQ 484 (562)
T ss_dssp CCCSEEECCSSC
T ss_pred CCCCEEECCCCC
Confidence 999999999885
No 32
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=4.6e-23 Score=249.35 Aligned_cols=228 Identities=21% Similarity=0.345 Sum_probs=173.2
Q ss_pred HHHHHHHHcCCCC---CCCchhHHHHHHHHHHHcCCc--eEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 8 EARAIIEALKPGS---TKDLVEFQSLMQHIQECVEGE--KFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 8 l~~~il~~~~~~~---~~~~~~~~~~~~~l~~~l~~k--r~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
.+++++.++.... .....+.+++.+.+++.+.+| |+||||||||+. .+|. ..++|||||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCHH
Confidence 4666777776221 233467888999999999977 999999999864 3333 3368999999999999
Q ss_pred hhhcc-CC------------cchHHHHHHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHH
Q 044935 83 TAHNM-GS------------TNIIQLMFSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILE 149 (683)
Q Consensus 83 v~~~~-~~------------~~~~~ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~ 149 (683)
++..+ +. .+..++|..+.... .+.+.+.+++|+++|+|+||||+++|+.|+.+. ..|+..++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~ 343 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLR 343 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHH
Confidence 88542 22 22344455444322 234556799999999999999999999998764 45777776
Q ss_pred hhhhcccc--------ccccchHHHHHhhcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHHhCcH-HHHHHHHHhcCC
Q 044935 150 SEIWEHEV--------VKKGLLAPLLLSYNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMAQGYL-NEYFNILASSSF 220 (683)
Q Consensus 150 ~~~~~~~~--------~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~-~~~l~~L~~~~l 220 (683)
........ ....++.++.+||+.|+++.|.||+|||+||+++.++++.++..|.+++.. ..++++|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 53222111 114589999999999999999999999999999999999999999765443 388999999999
Q ss_pred ceeecCCCCCCeeEEehhHHHHHHHHHHhhcc
Q 044935 221 FQEFNADGDGEVYMCKMHDLVHDLAQFIWRNE 252 (683)
Q Consensus 221 l~~~~~~~~g~~~~~~mhdl~~~~~~~~~~~e 252 (683)
++... ++....|+||+++|++++....++
T Consensus 424 ~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 98653 455557899999999999886655
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6.4e-22 Score=210.63 Aligned_cols=304 Identities=17% Similarity=0.139 Sum_probs=204.5
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+.+.++.+..+| . +..+++|++|++++|.+.. +| +..+++|++|++++| .+..+| ++
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~----l~~l~~L~~L~Ls~n~l~~----~~--~~~l~~L~~L~Ls~N-----~l~~~~--~~ 103 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-G----IEKLTGLTKLICTSNNITT----LD--LSQNTNLTYLACDSN-----KLTNLD--VT 103 (457)
T ss_dssp TTCCEEECCSSCCCCCT-T----GGGCTTCSEEECCSSCCSC----CC--CTTCTTCSEEECCSS-----CCSCCC--CT
T ss_pred CCCCEEEccCCCcccCh-h----hcccCCCCEEEccCCcCCe----Ec--cccCCCCCEEECcCC-----CCceee--cC
Confidence 67889999988887765 3 3459999999999998643 33 788899999999994 445554 78
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
.+++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|++|++++|..+..+ .++.+++|+.
T Consensus 104 ~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~- 174 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT- 174 (457)
T ss_dssp TCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE-
T ss_pred CCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCE-
Confidence 89999999999998 77776 8899999999999887 66664 788999999999998655544 2333333332
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccE
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKE 511 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 511 (683)
+.+....- .. . .+..+++|+.|++++|.+.+. .++.+++|+.
T Consensus 175 -----------L~ls~n~l-~~----l--~l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~ 216 (457)
T 3bz5_A 175 -----------LDCSFNKI-TE----L--DVSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTF 216 (457)
T ss_dssp -----------EECCSSCC-CC----C--CCTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSE
T ss_pred -----------EECCCCcc-ce----e--ccccCCCCCEEECcCCcCCee--------------------ccccCCCCCE
Confidence 22221110 11 0 155678888888888875431 2566788888
Q ss_pred EEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEe---cccccCCCCCCCCccc
Q 044935 512 LRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRV---GNKFLGVESDTDGSSV 588 (683)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~~~~~~~~~~ 588 (683)
|++++|.+.. + | +..+++|+.|++++|.+.+. | ++.+++|+.|++.+. .++.+ .+.+.+..+ .
T Consensus 217 L~Ls~N~l~~--i-p--~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~------~ 282 (457)
T 3bz5_A 217 LDCSSNKLTE--I-D--VTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQ------A 282 (457)
T ss_dssp EECCSSCCSC--C-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEE------C
T ss_pred EECcCCcccc--c-C--ccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCC-CCCEEECCCCccCCccc------c
Confidence 8888888877 5 4 67788888899888876653 2 455666666555432 11111 111111100 1
Q ss_pred cccccccccccccccccccccccc--ccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 589 IAFPKLKRLAFHTMEELEEWDFRT--AIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 589 ~~~~~L~~L~l~~~~~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
..+++|+.|++++|..+..++... ...-.+..+++|+.|++++|.. +.++ +.++++|+.|++++|.
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l-~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC-SCCC--CTTCTTCSEEECCSSC
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc-cccc--cccCCcCcEEECCCCC
Confidence 357888888888876555443210 0001245678888888888864 4454 6778888888888875
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=4.2e-23 Score=228.29 Aligned_cols=136 Identities=22% Similarity=0.206 Sum_probs=109.4
Q ss_pred EecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcE
Q 044935 280 TIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKY 358 (683)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~ 358 (683)
.+.....+|..+ .++++.|++++|.+. ...+..|.++++|++|+|++ +.+..++ ..++++++|++
T Consensus 15 ~~~~l~~ip~~l------~~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~ 80 (570)
T 2z63_A 15 MELNFYKIPDNL------PFSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLST 80 (570)
T ss_dssp CSSCCSSCCSSS------CSSCCEEECCSCCCC---EECTTTTTTCSSCCEEECTT-----CCCCEECTTTTTTCTTCCE
T ss_pred CCCCccccCCCc------cccccEEEccCCccC---ccChhHhhCCCCceEEECCC-----CcCCccCcccccCchhCCE
Confidence 344556666654 457999999999864 44566799999999999999 4455664 56899999999
Q ss_pred EeecCCCCccccc-hHHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCcccc-ccccccCCCCCCCCc
Q 044935 359 LSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLR-FLPVGIGELISLRNL 431 (683)
Q Consensus 359 L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~l 431 (683)
|++++|. +..+| ..++++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|+.+
T Consensus 81 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 81 LILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp EECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred EeCcCCc-CCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 9999999 76665 679999999999999997 777765 68999999999999996544 478889988888743
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.4e-22 Score=212.43 Aligned_cols=282 Identities=16% Similarity=0.153 Sum_probs=209.2
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-c
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-I 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i 350 (683)
+.++.+.+.++.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|++++ +.+..+|.. +
T Consensus 69 ~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~-----n~l~~l~~~~~ 137 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTY---AFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLER-----NDLSSLPRGIF 137 (390)
T ss_dssp CCCSEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-----SCCCCCCTTTT
T ss_pred ccCcEEECCCCcccccChh---hccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCC-----CccCcCCHHHh
Confidence 6899999999988776653 2345999999999999854 55677789999999999999 666788876 5
Q ss_pred cCCCCCcEEeecCCCCcccc-chHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRL-PEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
+.+++|++|++++|. +..+ |..+.++++|++|++++|. +..+ .+..+++|++|++++|.. ..++. ..+
T Consensus 138 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~l~~L~~L~l~~n~l-~~~~~----~~~-- 206 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYNLL-STLAI----PIA-- 206 (390)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBC--CGGGCTTCSEEECCSSCC-SEEEC----CSS--
T ss_pred cCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCcc--ccccccccceeecccccc-cccCC----CCc--
Confidence 899999999999998 6665 4568999999999999987 6655 367789999999998843 32221 111
Q ss_pred CccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCc
Q 044935 430 NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNL 509 (683)
Q Consensus 430 ~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 509 (683)
|+.+.+....- .. .+ .....+|+.|++++|.+.+ ...+..+++|
T Consensus 207 ----------L~~L~l~~n~l-~~----~~--~~~~~~L~~L~l~~n~l~~-------------------~~~l~~l~~L 250 (390)
T 3o6n_A 207 ----------VEELDASHNSI-NV----VR--GPVNVELTILKLQHNNLTD-------------------TAWLLNYPGL 250 (390)
T ss_dssp ----------CSEEECCSSCC-CE----EE--CCCCSSCCEEECCSSCCCC-------------------CGGGGGCTTC
T ss_pred ----------ceEEECCCCee-ee----cc--ccccccccEEECCCCCCcc-------------------cHHHcCCCCc
Confidence 22222221110 00 00 1224689999999998543 2356778999
Q ss_pred cEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccc
Q 044935 510 KELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVI 589 (683)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (683)
++|++++|.+.. ++|..+..+++|++|++++|.+.......+.+++|+.|+++++. +..++.. ..
T Consensus 251 ~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------~~ 315 (390)
T 3o6n_A 251 VEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN------------QP 315 (390)
T ss_dssp SEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG------------HH
T ss_pred cEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc------------cc
Confidence 999999998877 55788999999999999999876644447789999999998764 2222221 23
Q ss_pred cccccccccccccccccccccccccccccccCCcccEEeecCCCCC
Q 044935 590 AFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKL 635 (683)
Q Consensus 590 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 635 (683)
.+++|+.|++.++. ++... +..+++|+.|++++|+..
T Consensus 316 ~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 316 QFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp HHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred ccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCCcc
Confidence 58999999877764 43322 457999999999999863
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.4e-23 Score=210.81 Aligned_cols=119 Identities=20% Similarity=0.297 Sum_probs=77.0
Q ss_pred CCccEEEEeCCCCccccccchhhhcCCCceeEEEecc-cCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 299 RRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLET-YGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
.+++.|+++++.+... ..+|..|.++++|++|++++ |.+ ...+|..++.+++|++|++++|.....+|..+.++
T Consensus 50 ~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L~~L~L~~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCC-cccChhHhCCCCCCeeeCCCCCcc----cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 4677777777764310 03566677777777777773 322 23567777777777777777777333677777777
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCcccccccccc
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGI 422 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~ 422 (683)
++|++|++++|.....+|..+..+++|++|++++|.....+|..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 169 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH
Confidence 777777777776333667777777777777777775433444433
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4.1e-22 Score=225.05 Aligned_cols=334 Identities=15% Similarity=0.097 Sum_probs=205.3
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~ 354 (683)
.+...+..+..+|..+ .+++++|++++|.+. ...+..|.++++|++|+|++| .+..+ |..+++++
T Consensus 8 ~~~cs~~~L~~ip~~~------~~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l~ 73 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL------PTNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFN-----TISKLEPELCQKLP 73 (680)
T ss_dssp EEECCSSCCSSCCSCS------CTTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSS-----CCCCCCTTHHHHCT
T ss_pred eeECCCCCcccccccc------CCCCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCC-----ccCccCHHHHhccc
Confidence 3445556666677654 478999999999864 445667999999999999994 44444 67789999
Q ss_pred CCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCccccccccccCCCCCCCCcc
Q 044935 355 HLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLG 432 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 432 (683)
+|++|++++|. +..+|. .++++++|++|++++|. +..+| ..++++++|++|++++|......|..++.+++|+.+.
T Consensus 74 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 74 MLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred CcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 99999999998 888886 59999999999999998 56665 6789999999999999976655566666666655331
Q ss_pred ccccCccCCCeeEcCCCCCCChhHhHHhc--cccCCCCCeEEEEeecCCCCCcccccCC-----------CCchhHHHHH
Q 044935 433 SLKKLNLLRECWICGRGGVSDAGEARRAE--LEQKKNLLKLGLHFCHSRDGDEEQAGRR-----------ENEEDEAERL 499 (683)
Q Consensus 433 ~l~~L~~L~~l~i~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 499 (683)
+....- . ...+.. ...+++|+.|++++|.+.+..+..+... .........+
T Consensus 152 ------------L~~n~l-~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 215 (680)
T 1ziw_A 152 ------------LSNNKI-Q---ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215 (680)
T ss_dssp ------------CCSSCC-C---CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHH
T ss_pred ------------ccCCcc-c---ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHH
Confidence 111000 0 000111 1233566666666665443322211110 1111122223
Q ss_pred hhhcCCCCCccEEEEeeecCCCCccCcchHhhccc--cceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccc
Q 044935 500 LEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTN--LRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKF 576 (683)
Q Consensus 500 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~ 576 (683)
+..+ ..++|+.|++++|.... .+|.++..++. |++|++++|.+.+..+. ++.+++|+.|+++++......+..+
T Consensus 216 ~~~l-~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 216 CLEL-ANTSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp HHHH-TTSCCCEEECTTSCCCE--ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT
T ss_pred HHHh-hhccccEEEccCCcccc--cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh
Confidence 3322 24678888888877666 44666776654 88888888876665544 7788888888887654322222222
Q ss_pred cCCCCCCCCccccccccccccccccccccccc---ccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEE
Q 044935 577 LGVESDTDGSSVIAFPKLKRLAFHTMEELEEW---DFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEI 653 (683)
Q Consensus 577 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~---~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 653 (683)
..+++|+.|++.++..-... .+.......+..+++|+.|++++|...+..|..+..+++|++|++
T Consensus 293 ------------~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 293 ------------HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp ------------TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred ------------cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 23566666665543211000 000111113445666666666666544444444555666666666
Q ss_pred eCC
Q 044935 654 YGC 656 (683)
Q Consensus 654 ~~c 656 (683)
++|
T Consensus 361 s~n 363 (680)
T 1ziw_A 361 SNS 363 (680)
T ss_dssp TTC
T ss_pred CCC
Confidence 555
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=8.4e-22 Score=226.93 Aligned_cols=338 Identities=16% Similarity=0.142 Sum_probs=210.2
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~ 354 (683)
...........+|. . .+++++|++++|.+. ...|..|.++++|++|+|++|. .+..+ |..+++++
T Consensus 8 ~~dcs~~~L~~vP~-l------p~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~----~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V------LNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQY----TPLTIDKEAFRNLP 73 (844)
T ss_dssp EEEESCCCSSCCCS-S------CTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTC----CCCEECTTTTSSCT
T ss_pred EEEccCCCCCCCCC-C------CCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCC----CccccCHHHhcCCC
Confidence 34444556676776 3 788999999999864 5567789999999999999952 34566 77899999
Q ss_pred CCcEEeecCCCCccc-cchHHhcccCCcEEeccCccchhhcccc--cccccccceEecCCCccccccc-cccCCCCCCCC
Q 044935 355 HLKYLSLFGESEIKR-LPEVLCELYNLERLDVRFCVNLRELLQG--IGKLRKLMYLDNEGTNSLRFLP-VGIGELISLRN 430 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 430 (683)
+|++|+|++|. +.. .|..++++++|++|+|++|......|.. ++++++|++|++++|......+ ..++++++|+.
T Consensus 74 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 74 NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 99999999999 555 4888999999999999999844445655 8999999999999996544333 45677766664
Q ss_pred cc------------ccccC--ccCCCeeEcCCCCCCChhHhHHhccccCC------CCCeEEEEeecCCCCCcccccCCC
Q 044935 431 LG------------SLKKL--NLLRECWICGRGGVSDAGEARRAELEQKK------NLLKLGLHFCHSRDGDEEQAGRRE 490 (683)
Q Consensus 431 l~------------~l~~L--~~L~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~~ 490 (683)
+. .+..+ ..|+.+.+....-.. ..+..+..+. .|+.|++++|.+....+..+....
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 31 11111 223333332211100 0011111111 255555555543322211111000
Q ss_pred CchhH-------------------HHHHhhhcCC--CCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCC
Q 044935 491 NEEDE-------------------AERLLEALGP--PPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHL 549 (683)
Q Consensus 491 ~~~~~-------------------~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 549 (683)
..... .......+.. +++|+.|++++|.+.. +++..+..+++|+.|++++|.+.+..
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcCCCCC
Confidence 00000 0000011111 2578888888877665 55677778888888888888776655
Q ss_pred CC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEe
Q 044935 550 PP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLS 628 (683)
Q Consensus 550 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~ 628 (683)
+. ++.+++|+.|+++++. +.+..+ .....+++|+.|+++++ .+....+..+..+++|+.|+
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~--------l~~~~~----~~~~~l~~L~~L~L~~N------~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNL--------LGELYS----SNFYGLPKVAYIDLQKN------HIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp TTTTTTCSSCCEEEEESCC--------CSCCCS----CSCSSCTTCCEEECCSC------CCCCCCSSCSCSCCCCCEEE
T ss_pred hHHhcCCCCCCEEECCCCC--------CCccCH----HHhcCCCCCCEEECCCC------CCCccChhhhcCCCCCCEEE
Confidence 54 7788888888886643 222111 11235778888865554 33344455677788888888
Q ss_pred ecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 629 IDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 629 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
+++|. ++.++. +++|+.|++++|.
T Consensus 369 Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 369 LRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp EETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred CCCCC-CCcccC----CCCcchhccCCCC
Confidence 88886 344443 6778888887775
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.8e-22 Score=222.13 Aligned_cols=183 Identities=16% Similarity=0.096 Sum_probs=136.9
Q ss_pred EEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCc
Q 044935 279 LTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLK 357 (683)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~ 357 (683)
...+....+|..+ .++|++|++++|.+. ...|..|.++++|++|++++ +.+..++ ..++.+++|+
T Consensus 12 ~~~~~l~~ip~~~------~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 12 GRSRSFTSIPSGL------TAAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKS-----SRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp CTTSCCSSCCSCC------CTTCCEEECCSSCCC---EECSSTTSSCTTCCEEECTT-----SCCCEECTTTTTTCTTCC
T ss_pred CCCCccccccccC------CCCccEEECcCCccC---ccChhhhhcCCcccEEECCC-----CCcCccChhhccccccCC
Confidence 3445666677655 478999999999864 44567799999999999999 4455555 6799999999
Q ss_pred EEeecCCCCccccch-HHhcccCCcEEeccCccchh--hcccccccccccceEecCCCccccccc-cccCCCCCCCCc--
Q 044935 358 YLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLR--ELLQGIGKLRKLMYLDNEGTNSLRFLP-VGIGELISLRNL-- 431 (683)
Q Consensus 358 ~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l-- 431 (683)
+|++++|. +..+|. .++++++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..++.+++|+.+
T Consensus 78 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 78 HLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp EEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred EEECCCCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 99999999 776665 49999999999999997 55 356789999999999999997667776 467777777633
Q ss_pred ----------cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC
Q 044935 432 ----------GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG 481 (683)
Q Consensus 432 ----------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 481 (683)
..+..++.|+.+.+..... . ......+..+++|+.|++++|.+.+.
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~---~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSES-A---FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBS-T---THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cCCcccccChhhhhccccCceEecccCcc-c---ccchhhHhhcccccEEEccCCccccc
Confidence 2344555566666554322 1 11122235688999999999987653
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.6e-22 Score=211.79 Aligned_cols=279 Identities=16% Similarity=0.143 Sum_probs=200.4
Q ss_pred hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHh
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLC 375 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~ 375 (683)
.++++|++|++++|.+.. +| .+..+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~----~~-~l~~l~~L~~L~Ls~n-----~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~ 103 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITD----MT-GIEKLTGLTKLICTSN-----NITTLD--LSQNTNLTYLACDSNK-LTNLD--VT 103 (457)
T ss_dssp HHHTTCCEEECCSSCCCC----CT-TGGGCTTCSEEECCSS-----CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CT
T ss_pred hHcCCCCEEEccCCCccc----Ch-hhcccCCCCEEEccCC-----cCCeEc--cccCCCCCEEECcCCC-Cceee--cC
Confidence 449999999999998642 35 4889999999999994 455565 8899999999999998 88876 89
Q ss_pred cccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChh
Q 044935 376 ELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAG 455 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~ 455 (683)
++++|++|++++|. +..+| ++.+++|++|++++|.. ..++ ++.+++| +.+.+.........
T Consensus 104 ~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L------------~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQL------------TELDCHLNKKITKL- 164 (457)
T ss_dssp TCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTC------------CEEECTTCSCCCCC-
T ss_pred CCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcC------------CEEECCCCCccccc-
Confidence 99999999999997 77775 89999999999999853 3332 3333333 33333322111111
Q ss_pred HhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhcccc
Q 044935 456 EARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNL 535 (683)
Q Consensus 456 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 535 (683)
.+..+++|+.|++++|.+.+ ++ ++.+++|+.|++++|.+.. + + +..+++|
T Consensus 165 -----~~~~l~~L~~L~ls~n~l~~------------------l~--l~~l~~L~~L~l~~N~l~~--~-~--l~~l~~L 214 (457)
T 3bz5_A 165 -----DVTPQTQLTTLDCSFNKITE------------------LD--VSQNKLLNRLNCDTNNITK--L-D--LNQNIQL 214 (457)
T ss_dssp -----CCTTCTTCCEEECCSSCCCC------------------CC--CTTCTTCCEEECCSSCCSC--C-C--CTTCTTC
T ss_pred -----ccccCCcCCEEECCCCccce------------------ec--cccCCCCCEEECcCCcCCe--e-c--cccCCCC
Confidence 35678999999999998543 12 6678999999999999877 4 2 6789999
Q ss_pred ceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccc----cccccccc
Q 044935 536 RDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTME----ELEEWDFR 611 (683)
Q Consensus 536 ~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~L~~~~~~ 611 (683)
++|++++|.+.+ +| ++.+++|+.|+++++. +.+.. ...+++|+.|.+.... ++..+.+.
T Consensus 215 ~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~--------l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 215 TFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP--------LTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp SEEECCSSCCSC-CC-CTTCTTCSEEECCSSC--------CSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CEEECcCCcccc-cC-ccccCCCCEEEeeCCc--------CCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 999999998776 56 8899999999997653 33321 1245555555433221 12222222
Q ss_pred cccccccccCCcccEEeecCCCCCCcCCcC--------CCCCCCCceEEEeCCc
Q 044935 612 TAIKGEIIIMPRLSSLSIDDCPKLKALPDR--------LLQKTTLQRLEIYGCP 657 (683)
Q Consensus 612 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~--------l~~l~~L~~L~l~~c~ 657 (683)
+.+| +..+++|+.|++++|+.++.+|.. +.++++|+.|++++|.
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 3333 357899999999999988877752 3345566666666653
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9.4e-23 Score=208.73 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=93.9
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-ccccc
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIK 351 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~ 351 (683)
.++.+.+.++.+..+|..+ .+++++|++++|.+. ...|..|.++++|++|++++ +.+..+ |..++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI------SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVN-----NKISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC------CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCS-----SCCCEECGGGST
T ss_pred cCCEEECCCCCccccCCCC------CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCC-----CccCccCHhHhh
Confidence 4566777777777777655 467888999888753 44466788888999999988 444555 67788
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCcc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNS 414 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 414 (683)
.+++|++|++++|. +..+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|..
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcc
Confidence 88899999998888 778887554 789999998887 666664 468888999999888844
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5e-22 Score=202.28 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=153.6
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
.++++.|++++|.+. .+|..+.++++|++|+|++ +.+..+|..++.+++|++|++++|. +..+|..++++
T Consensus 80 ~~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~-----n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDA-----AGLMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEES-----SCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred ccceeEEEccCCCch----hcChhhhhCCCCCEEECCC-----CCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 567888888888753 3555577788888888888 5556788888888888888888887 66888888888
Q ss_pred cCCcEEeccCccchhhccccccc---------ccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCC
Q 044935 378 YNLERLDVRFCVNLRELLQGIGK---------LRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGR 448 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~ 448 (683)
++|++|++++|..+..+|..+.. +++|++|++++|. +..+|..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~--------------------------- 201 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS--------------------------- 201 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGG---------------------------
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHh---------------------------
Confidence 88888888887777777776654 8888888887773 2233332
Q ss_pred CCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcch
Q 044935 449 GGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINW 528 (683)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 528 (683)
+..+++|+.|++++|.+.+ ++..++.+++|++|++++|.... ..|..
T Consensus 202 -------------l~~l~~L~~L~L~~N~l~~------------------l~~~l~~l~~L~~L~Ls~n~~~~--~~p~~ 248 (328)
T 4fcg_A 202 -------------IANLQNLKSLKIRNSPLSA------------------LGPAIHHLPKLEELDLRGCTALR--NYPPI 248 (328)
T ss_dssp -------------GGGCTTCCEEEEESSCCCC------------------CCGGGGGCTTCCEEECTTCTTCC--BCCCC
T ss_pred -------------hcCCCCCCEEEccCCCCCc------------------CchhhccCCCCCEEECcCCcchh--hhHHH
Confidence 3345677788888887543 24456778899999999988776 33788
Q ss_pred HhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCee
Q 044935 529 IMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVK 570 (683)
Q Consensus 529 ~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~ 570 (683)
+..+++|++|++++|...+.+|. ++.+++|+.|++++|..+.
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 89999999999999998888886 7888888888887766443
No 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=1.1e-22 Score=224.37 Aligned_cols=187 Identities=21% Similarity=0.287 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHc---CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhhhccC--------------
Q 044935 26 EFQSLMQHIQECV---EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTAHNMG-------------- 88 (683)
Q Consensus 26 ~~~~~~~~l~~~l---~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~~~~-------------- 88 (683)
+.+++.+.+++.| .+||+||||||||+. .+|+.+ + +|||||||||++.++..+.
T Consensus 226 ~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL 296 (1221)
T 1vt4_I 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296 (1221)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSS
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccC
Confidence 4566777788766 789999999999973 456543 2 6999999999998874221
Q ss_pred ---CcchHHHHHHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCC-CHHHHHHHHHhhhhccccccccchH
Q 044935 89 ---STNIIQLMFSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKN-NEEEWKNILESEIWEHEVVKKGLLA 164 (683)
Q Consensus 89 ---~~~~~~ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~-~~~~w~~~l~~~~~~~~~~~~~~~~ 164 (683)
..+..++|....... ..+++.+ .|+|+||||+++|+.|+.+. +.++|+.. ....+..
T Consensus 297 ~LS~eEA~eLF~~~~g~~------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~a 357 (1221)
T 1vt4_I 297 TLTPDEVKSLLLKYLDCR------PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTT 357 (1221)
T ss_dssp CCCHHHHHHHHHHHHCCC------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHH
T ss_pred CcCHHHHHHHHHHHcCCC------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHH
Confidence 123445564432221 1223333 39999999999999999874 67888753 2356899
Q ss_pred HHHHhhcCCChhh-HHHhhhhccCCCCeeeChHHHHHHHHHhCc--HHHHHHHHHhcCCceeecCCCCCCeeEEehhHHH
Q 044935 165 PLLLSYNELPSKV-KHYFSYCAVFPKDREIWKYELIKLWMAQGY--LNEYFNILASSSFFQEFNADGDGEVYMCKMHDLV 241 (683)
Q Consensus 165 ~l~~sy~~L~~~~-k~~fl~~a~fp~~~~~~~~~li~~w~~~g~--~~~~l~~L~~~~ll~~~~~~~~g~~~~~~mhdl~ 241 (683)
+++.||+.|+++. |.||+|||+||+++.+.++.++..|+++|. ...++++|+++||++.. +....|+|||++
T Consensus 358 aLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLl 432 (1221)
T 1vt4_I 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIY 432 (1221)
T ss_dssp HHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHH
Confidence 9999999999999 999999999999999999999999999874 44889999999999873 222358999999
Q ss_pred HHHH
Q 044935 242 HDLA 245 (683)
Q Consensus 242 ~~~~ 245 (683)
++++
T Consensus 433 lELr 436 (1221)
T 1vt4_I 433 LELK 436 (1221)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9865
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.6e-22 Score=205.31 Aligned_cols=290 Identities=17% Similarity=0.177 Sum_probs=153.1
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-ccccc
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIK 351 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~ 351 (683)
.++.+.+.++....+|..+ .+++++|++++|.+. ...+..|.++++|++|++++ +.+..+ |..++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILIN-----NKISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCS-----SCCCCBCTTTTT
T ss_pred CCeEEEecCCCccccCccC------CCCCeEEECCCCcCC---EeChhhhccCCCCCEEECCC-----CcCCeeCHHHhc
Confidence 3445555555566555543 356777777777643 33344577777777777777 344444 66677
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCcccc--ccccccCCCCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLR--FLPVGIGELISL 428 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L 428 (683)
.+++|++|++++|. +..+|..+. ++|++|++++|. +..++ ..+.++++|++|++++|.... ..+.
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------- 165 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-------- 165 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT--------
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChh--------
Confidence 77777777777777 667776443 677777777776 44444 346777777777777764321 1111
Q ss_pred CCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCC
Q 044935 429 RNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPN 508 (683)
Q Consensus 429 ~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
.+..+++|+.|++++|.+... +..+ .++
T Consensus 166 --------------------------------~~~~l~~L~~L~l~~n~l~~l------------------~~~~--~~~ 193 (330)
T 1xku_A 166 --------------------------------AFQGMKKLSYIRIADTNITTI------------------PQGL--PPS 193 (330)
T ss_dssp --------------------------------GGGGCTTCCEEECCSSCCCSC------------------CSSC--CTT
T ss_pred --------------------------------hccCCCCcCEEECCCCccccC------------------Cccc--ccc
Confidence 233344555555555443211 1111 145
Q ss_pred ccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcc
Q 044935 509 LKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSS 587 (683)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 587 (683)
|++|++++|.+.. +++..+..+++|++|++++|.+.+..+. ++.+++|+.|+++++. +..++. .
T Consensus 194 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~ 258 (330)
T 1xku_A 194 LTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPG------------G 258 (330)
T ss_dssp CSEEECTTSCCCE--ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCT------------T
T ss_pred CCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCCh------------h
Confidence 5555555555444 3344555555555555555554443332 4555555555554432 111111 0
Q ss_pred cccccccccccccccccccccccccccc-cccccCCcccEEeecCCCCCC--cCCcCCCCCCCCceEEEeCC
Q 044935 588 VIAFPKLKRLAFHTMEELEEWDFRTAIK-GEIIIMPRLSSLSIDDCPKLK--ALPDRLLQKTTLQRLEIYGC 656 (683)
Q Consensus 588 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c 656 (683)
...+++|++|++.++. ++........+ ......++|+.|++++|+... ..|..+..+++++.+++++|
T Consensus 259 l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1234555555444332 22211100000 001124677788888887532 34456666778888887776
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.4e-22 Score=220.34 Aligned_cols=282 Identities=16% Similarity=0.137 Sum_probs=209.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-c
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-I 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i 350 (683)
..++.+.+.++.+..++.. .+..+++|++|++++|.+. ...|..|+++++|++|+|++ +.+..+|.. +
T Consensus 75 ~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~-----n~l~~l~~~~~ 143 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTY---AFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLER-----NDLSSLPRGIF 143 (597)
T ss_dssp CCCSEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-----SCCCCCCTTTT
T ss_pred CCCcEEECCCCCCCCCChH---HhcCCCCCCEEECCCCcCC---CCCHHHHcCCCCCCEEEeeC-----CCCCCCCHHHh
Confidence 6789999999988876653 2345999999999999864 55677789999999999999 566778876 5
Q ss_pred cCCCCCcEEeecCCCCcccc-chHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRL-PEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
+.+++|++|++++|. +..+ |..++++++|++|++++|. +..++ ++.+++|++|++++|.. ..++ ...+
T Consensus 144 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l-~~l~----~~~~-- 212 (597)
T 3oja_B 144 HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-STLA----IPIA-- 212 (597)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCC-SEEE----CCTT--
T ss_pred ccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCcc-cccc----CCch--
Confidence 899999999999998 5555 4569999999999999997 66554 67789999999998843 2222 1111
Q ss_pred CccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCc
Q 044935 430 NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNL 509 (683)
Q Consensus 430 ~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 509 (683)
|+.+.+....- .. .+ .....+|+.|++++|.+.+ +..+..+++|
T Consensus 213 ----------L~~L~ls~n~l-~~----~~--~~~~~~L~~L~L~~n~l~~-------------------~~~l~~l~~L 256 (597)
T 3oja_B 213 ----------VEELDASHNSI-NV----VR--GPVNVELTILKLQHNNLTD-------------------TAWLLNYPGL 256 (597)
T ss_dssp ----------CSEEECCSSCC-CE----EE--CSCCSCCCEEECCSSCCCC-------------------CGGGGGCTTC
T ss_pred ----------hheeeccCCcc-cc----cc--cccCCCCCEEECCCCCCCC-------------------ChhhccCCCC
Confidence 22222221110 00 00 0123689999999998643 2456778999
Q ss_pred cEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccc
Q 044935 510 KELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVI 589 (683)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (683)
+.|++++|.+.. ++|..+..+++|+.|++++|.+....+.++.+++|+.|+|++|.. ..++. ...
T Consensus 257 ~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~------------~~~ 321 (597)
T 3oja_B 257 VEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVER------------NQP 321 (597)
T ss_dssp SEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCC-CCCGG------------GHH
T ss_pred CEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCC-CccCc------------ccc
Confidence 999999999877 558889999999999999998776544477899999999987652 22221 123
Q ss_pred cccccccccccccccccccccccccccccccCCcccEEeecCCCCC
Q 044935 590 AFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKL 635 (683)
Q Consensus 590 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 635 (683)
.+++|+.|++++|. +.... +..+++|+.|+|++|+..
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred cCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCCC
Confidence 68999999877764 43321 457899999999999863
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=5.5e-22 Score=200.80 Aligned_cols=250 Identities=17% Similarity=0.132 Sum_probs=174.5
Q ss_pred CceEEEEEEecCCCC---cccccchhhhccCCccEEEEeC-CCCccccccchhhhcCCCceeEEEecccCCcccCcc-cc
Q 044935 272 KKVLHLMLTIDEGTS---VPISIWNNVKRMRRLRSLSVEG-GEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIK-EI 346 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~l 346 (683)
.+++++.+.++.+.. +|..+ .++++|++|++++ |.+ ...+|..|.++++|++|++++ +.+. .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l----~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~-----n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL----ANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITH-----TNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG----GGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEE-----ECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhH----hCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcC-----CeeCCcC
Confidence 479999999998873 55444 4599999999995 764 345788899999999999999 4444 78
Q ss_pred cccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccccccccc-ccceEecCCCccccccccccCCC
Q 044935 347 PTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLR-KLMYLDNEGTNSLRFLPVGIGEL 425 (683)
Q Consensus 347 p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~~~~l 425 (683)
|..++.+++|++|++++|.....+|..+.++++|++|++++|.....+|..++.++ +|++|++++|.....+|..++.+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 89999999999999999994448999999999999999999984448899999998 99999999996655666554433
Q ss_pred CCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCC
Q 044935 426 ISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGP 505 (683)
Q Consensus 426 ~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (683)
. |+.|++++|.+.+ ..+..+..
T Consensus 198 ----------------------------------------~-L~~L~Ls~N~l~~-----------------~~~~~~~~ 219 (313)
T 1ogq_A 198 ----------------------------------------N-LAFVDLSRNMLEG-----------------DASVLFGS 219 (313)
T ss_dssp ----------------------------------------C-CSEEECCSSEEEE-----------------CCGGGCCT
T ss_pred ----------------------------------------c-ccEEECcCCcccC-----------------cCCHHHhc
Confidence 2 4455555554221 12344555
Q ss_pred CCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCC
Q 044935 506 PPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTD 584 (683)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 584 (683)
+++|+.|++++|.+.. . +..+..+++|++|++++|.+.+.+|. ++.+++|+.|+++++..-..++.
T Consensus 220 l~~L~~L~L~~N~l~~--~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~---------- 286 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAF--D-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---------- 286 (313)
T ss_dssp TSCCSEEECCSSEECC--B-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC----------
T ss_pred CCCCCEEECCCCceee--e-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC----------
Confidence 6666666666666544 2 22245566666666666666545554 66666666666655432111111
Q ss_pred Ccccccccccccccccccccccc
Q 044935 585 GSSVIAFPKLKRLAFHTMEELEE 607 (683)
Q Consensus 585 ~~~~~~~~~L~~L~l~~~~~L~~ 607 (683)
...+++|+.|++.+++.+..
T Consensus 287 ---~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 ---GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ---STTGGGSCGGGTCSSSEEES
T ss_pred ---CccccccChHHhcCCCCccC
Confidence 12466677777776665554
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=202.64 Aligned_cols=268 Identities=16% Similarity=0.144 Sum_probs=180.7
Q ss_pred EEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCCC
Q 044935 277 LMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLLH 355 (683)
Q Consensus 277 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~~ 355 (683)
....++....+|..+ .++|++|++++|.+. ...+..|.++++|++|++++ +.+..+ |..++.+++
T Consensus 36 c~~~~~~l~~iP~~~------~~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL------TEAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTS-----NGINTIEEDSFSSLGS 101 (353)
T ss_dssp EECCSTTCSSCCTTC------CTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTT-----SCCCEECTTTTTTCTT
T ss_pred eeCCCCCcccccccc------cccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCC-----CccCccCHhhcCCCCC
Confidence 344556666666654 457888888888753 33444678888888888888 444555 456888888
Q ss_pred CcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhccc--ccccccccceEecCCCccccccccccCCCCCCCCcc
Q 044935 356 LKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQ--GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLG 432 (683)
Q Consensus 356 L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 432 (683)
|++|++++|. +..+|.. +.++++|++|++++|. +..+|. .+.++++|++|++++|..+..++.
T Consensus 102 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~------------ 167 (353)
T 2z80_A 102 LEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR------------ 167 (353)
T ss_dssp CCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------------
T ss_pred CCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH------------
Confidence 8888888887 7777765 7788888888888886 667776 567888888888887743333321
Q ss_pred ccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEE
Q 044935 433 SLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKEL 512 (683)
Q Consensus 433 ~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 512 (683)
..+..+++|+.|++++|.+.+. .+..+..+++|++|
T Consensus 168 ---------------------------~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~l~~l~~L~~L 203 (353)
T 2z80_A 168 ---------------------------KDFAGLTFLEELEIDASDLQSY-----------------EPKSLKSIQNVSHL 203 (353)
T ss_dssp ---------------------------TTTTTCCEEEEEEEEETTCCEE-----------------CTTTTTTCSEEEEE
T ss_pred ---------------------------HHccCCCCCCEEECCCCCcCcc-----------------CHHHHhccccCCee
Confidence 1233456777888888764321 24566777888888
Q ss_pred EEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC----CCCCCCcceEEecCCCCeeEecccccCCCCCCCCccc
Q 044935 513 RIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP----LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSV 588 (683)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 588 (683)
++++|.... ++...+..+++|+.|++++|.+.+..+. ....+.
T Consensus 204 ~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~------------------------------- 250 (353)
T 2z80_A 204 ILHMKQHIL--LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL------------------------------- 250 (353)
T ss_dssp EEECSCSTT--HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC-------------------------------
T ss_pred cCCCCcccc--chhhhhhhcccccEEECCCCccccccccccccccccch-------------------------------
Confidence 888888755 5444455688888888888865543221 112223
Q ss_pred ccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCC-CCCCCCceEEEeCCc
Q 044935 589 IAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRL-LQKTTLQRLEIYGCP 657 (683)
Q Consensus 589 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 657 (683)
++.+.+.++ .+.++.+ ..+|..+..+++|+.|++++|. ++.+|..+ ..+++|++|++++|+
T Consensus 251 -----l~~l~L~~~-~l~~~~l-~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 251 -----IKKFTFRNV-KITDESL-FQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -----CCEEEEESC-BCCHHHH-HHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----hhccccccc-cccCcch-hhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 333333332 2333332 1245566789999999999996 55788774 789999999999987
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.2e-20 Score=189.74 Aligned_cols=275 Identities=16% Similarity=0.174 Sum_probs=199.4
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
+.++.+.+.++.+..++... +.++++|++|++++|.+. ...|..|.++++|++|++++ +.+..+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~-----n~l~~l~~~~~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGD---FKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSK-----NQLKELPEKMP 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTT---TTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCS-----SCCSBCCSSCC
T ss_pred CCCeEEECCCCcCCEeChhh---hccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCEEECCC-----CcCCccChhhc
Confidence 57889999999988776532 345999999999999864 44578899999999999999 66677887665
Q ss_pred CCCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccch--hhcccccccccccceEecCCCccccccccccCCCCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNL--RELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL 428 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 428 (683)
++|++|++++|. +..++ ..+.++++|++|++++|... ...+..+.++++|++|++++|. +..+|..+
T Consensus 121 --~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~------ 190 (330)
T 1xku_A 121 --KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL------ 190 (330)
T ss_dssp --TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC------
T ss_pred --ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc------
Confidence 799999999998 66666 45899999999999998732 2456778999999999999984 33343321
Q ss_pred CCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCC
Q 044935 429 RNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPN 508 (683)
Q Consensus 429 ~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
.++|+.|++++|.+.+. .+..+..+++
T Consensus 191 ------------------------------------~~~L~~L~l~~n~l~~~-----------------~~~~~~~l~~ 217 (330)
T 1xku_A 191 ------------------------------------PPSLTELHLDGNKITKV-----------------DAASLKGLNN 217 (330)
T ss_dssp ------------------------------------CTTCSEEECTTSCCCEE-----------------CTGGGTTCTT
T ss_pred ------------------------------------cccCCEEECCCCcCCcc-----------------CHHHhcCCCC
Confidence 14667777777764321 1356777889
Q ss_pred ccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecc-cccCCCCCCCCcc
Q 044935 509 LKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGN-KFLGVESDTDGSS 587 (683)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~~~ 587 (683)
|++|++++|.+.. +++..+..+++|++|++++|.+......+..+++|+.|+++++. +..++. .+.+.. .
T Consensus 218 L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~------~ 288 (330)
T 1xku_A 218 LAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG------Y 288 (330)
T ss_dssp CCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS------C
T ss_pred CCEEECCCCcCce--eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcc------c
Confidence 9999999988877 65667889999999999999776433448899999999997754 222221 111110 0
Q ss_pred cccccccccccccccccccccccccccccccccCCcccEEeecCCC
Q 044935 588 VIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCP 633 (683)
Q Consensus 588 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 633 (683)
....+.|+.|++.+++ +..+ ...|..+..+++|+.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~-~~~~---~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNP-VQYW---EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSS-SCGG---GSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCc-cccc---ccCccccccccceeEEEecccC
Confidence 1135778888776665 3332 2356678889999999999884
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.9e-20 Score=191.59 Aligned_cols=218 Identities=21% Similarity=0.217 Sum_probs=164.4
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
+.++.+.+.++.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|++++ +.+..+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~-----n~l~~l~~~~~ 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKD---DFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISK-----NHLVEIPPNLP 122 (332)
T ss_dssp TTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCC---EECGGGSTTCTTCCEEECCS-----SCCCSCCSSCC
T ss_pred CCCeEEECCCCcCCccCHh---HhhCCCCCcEEECCCCccC---ccCHhHhhCcCCCCEEECCC-----CcCCccCcccc
Confidence 5789999999988876543 2345999999999999853 55678899999999999999 66678887765
Q ss_pred CCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccch--hhcccccccccccceEecCCCccccccccccCCCCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNL--RELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL 428 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 428 (683)
++|++|++++|. +..+|. .+.++++|++|++++|... ...|..+..+ +|++|++++|. +..+|..+.
T Consensus 123 --~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~----- 192 (332)
T 2ft3_A 123 --SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP----- 192 (332)
T ss_dssp --TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC-----
T ss_pred --ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc-----
Confidence 899999999999 777775 4889999999999999732 2456667777 99999999884 334443221
Q ss_pred CCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCC
Q 044935 429 RNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPN 508 (683)
Q Consensus 429 ~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
++|+.|++++|.+.... +..+..+++
T Consensus 193 -------------------------------------~~L~~L~l~~n~i~~~~-----------------~~~l~~l~~ 218 (332)
T 2ft3_A 193 -------------------------------------ETLNELHLDHNKIQAIE-----------------LEDLLRYSK 218 (332)
T ss_dssp -------------------------------------SSCSCCBCCSSCCCCCC-----------------TTSSTTCTT
T ss_pred -------------------------------------CCCCEEECCCCcCCccC-----------------HHHhcCCCC
Confidence 35566666666543321 245667788
Q ss_pred ccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCC
Q 044935 509 LKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGM 566 (683)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~ 566 (683)
|++|++++|.+.. +++.++..+++|++|++++|.+......++.+++|+.|+++++
T Consensus 219 L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 219 LYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 8888888888777 6566788888899999988876643333778888888888654
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=6.7e-20 Score=185.26 Aligned_cols=226 Identities=19% Similarity=0.193 Sum_probs=134.5
Q ss_pred CceeEEEecccCCcccCccccccc-ccCCCCCcEEeecCCCCcccc---chHHhcccCCcEEeccCccchhhcccccccc
Q 044935 326 TCLRAITLETYGWDYNPIKEIPTN-IKNLLHLKYLSLFGESEIKRL---PEVLCELYNLERLDVRFCVNLRELLQGIGKL 401 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 401 (683)
++|++|++++ +.+..+|.. ++.+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|..+..+
T Consensus 28 ~~l~~L~L~~-----n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELES-----NKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETC
T ss_pred CCCCEEECCC-----CccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCC
Confidence 5677888877 455566654 5778888888888877 5543 5667778888888888776 66777777788
Q ss_pred cccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC
Q 044935 402 RKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG 481 (683)
Q Consensus 402 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 481 (683)
++|++|++++|.. ..++.. ..+..+++|+.|++++|.+...
T Consensus 101 ~~L~~L~l~~n~l-~~~~~~--------------------------------------~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 101 EQLEHLDFQHSNL-KQMSEF--------------------------------------SVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp TTCCEEECTTSEE-ESSTTT--------------------------------------TTTTTCTTCCEEECTTSCCEEC
T ss_pred CCCCEEECCCCcc-cccccc--------------------------------------hhhhhccCCCEEECCCCcCCcc
Confidence 8888888877732 222110 0122334455555555442110
Q ss_pred CcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcce
Q 044935 482 DEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLED 560 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 560 (683)
.+..+..+++|++|++++|.+....+ |..+..+++|++|++++|.+.+..|. ++.+++|+.
T Consensus 142 -----------------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 142 -----------------FNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp -----------------STTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -----------------chhhcccCcCCCEEECCCCccccccc-hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 12234445566666666655443222 44555566666666666654444333 555555555
Q ss_pred EEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc
Q 044935 561 LHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD 640 (683)
Q Consensus 561 L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 640 (683)
|+++++. +....+..+..+++|+.|++++|+..+..|.
T Consensus 204 L~L~~N~------------------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 204 LNMSHNN------------------------------------------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EECTTSC------------------------------------------CSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred EECCCCc------------------------------------------cCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 5554322 1112222345677888888888876666676
Q ss_pred CCCCCC-CCceEEEeCCc
Q 044935 641 RLLQKT-TLQRLEIYGCP 657 (683)
Q Consensus 641 ~l~~l~-~L~~L~l~~c~ 657 (683)
.+..++ +|+.|++++|+
T Consensus 242 ~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCCCTTCCEEECTTCC
T ss_pred HHHhhhccCCEEEccCCC
Confidence 776664 78888888876
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.8e-20 Score=210.05 Aligned_cols=132 Identities=22% Similarity=0.218 Sum_probs=107.6
Q ss_pred CCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCCCCcEEee
Q 044935 283 EGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSL 361 (683)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L 361 (683)
....+|..+ -+.+++|++++|.+. ...+..|.++++|++|+|++ +.+..+|. .|++|++|++|+|
T Consensus 42 ~l~~vP~~l------p~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~-----N~i~~i~~~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 42 NFYKIPDNL------PFSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLIL 107 (635)
T ss_dssp CCSSCCSSS------CTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCccCCCC------CcCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCC-----CcCCCcChhHhcCCCCCCEEEc
Confidence 455666654 357999999999864 44567799999999999999 66677765 6899999999999
Q ss_pred cCCCCccccch-HHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCcccc-ccccccCCCCCCCC
Q 044935 362 FGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLR-FLPVGIGELISLRN 430 (683)
Q Consensus 362 ~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~ 430 (683)
++|. ++.+|. .+.++++|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|+.
T Consensus 108 s~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 108 TGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp TTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred cCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 9998 888885 57999999999999997 777775 58999999999999996533 45677777777773
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=9e-22 Score=211.51 Aligned_cols=359 Identities=16% Similarity=0.087 Sum_probs=187.0
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCcccc-ccchhhhcCCCceeEEEecccCCcccCcccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSS-KVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i 350 (683)
++++++.+..+.+...+ ....+..+++|++|++++|.+.... ..++..+..+++|++|+|++|.+++.....+...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35566666655544322 1112344666666666666542110 12445555666666666666433321111121111
Q ss_pred cCCC-CCcEEeecCCCCcc-----ccchHHhcccCCcEEeccCccchhhccccc-----ccccccceEecCCCcccc---
Q 044935 351 KNLL-HLKYLSLFGESEIK-----RLPEVLCELYNLERLDVRFCVNLRELLQGI-----GKLRKLMYLDNEGTNSLR--- 416 (683)
Q Consensus 351 ~~l~-~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-----~~l~~L~~L~l~~~~~~~--- 416 (683)
.... +|++|++++|. +. .+|..+.++++|++|++++|......+..+ ...++|++|++++|....
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 1111 46666666665 33 345555666666666666655222212221 123456666666653322
Q ss_pred -ccccccCCCCCCCCcc------------ccc-----cCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecC
Q 044935 417 -FLPVGIGELISLRNLG------------SLK-----KLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHS 478 (683)
Q Consensus 417 -~~p~~~~~l~~L~~l~------------~l~-----~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 478 (683)
.++..+..+++|+.+. .+. ....|+.+.+.+..-........+..+..+++|+.|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 1222233333333110 000 1224555555544333333334556667788888888888863
Q ss_pred CCCCcccccCCCCchhHHHHHhhh-cCCCCCccEEEEeeecCCCCc---cCcchHhhccccceEeecCCCCCCCCCC---
Q 044935 479 RDGDEEQAGRRENEEDEAERLLEA-LGPPPNLKELRIHEYRGRRNV---VPINWIMSLTNLRDLYLSYCRNCEHLPP--- 551 (683)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~--- 551 (683)
.+ .....+... ...+++|++|++++|.+.... + +..+..+++|++|++++|.+.+..+.
T Consensus 240 ~~-------------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 240 GD-------------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp HH-------------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred Ch-------------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 21 122333333 335789999999988765421 2 45566788999999998865432111
Q ss_pred ---CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccc-cCCcccEE
Q 044935 552 ---LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEII-IMPRLSSL 627 (683)
Q Consensus 552 ---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L~~L 627 (683)
....++|+.|++++|.. .... ..........+++|++|+++++. ++...... +...+. ..++|+.|
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l----~~~~----~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSF----TAAC----CSHFSSVLAQNRFLLELQISNNR-LEDAGVRE-LCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCC----BGGG----HHHHHHHHHHCSSCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEE
T ss_pred HHhccCCccceeeEcCCCCC----chHH----HHHHHHHHhhCCCccEEEccCCc-cccccHHH-HHHHHcCCCCceEEE
Confidence 22346899999987751 1110 00000112246888999777763 44322110 111111 26799999
Q ss_pred eecCCCCCC----cCCcCCCCCCCCceEEEeCCc
Q 044935 628 SIDDCPKLK----ALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 628 ~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 657 (683)
++++|.... .+|..+..+++|++|++++|+
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 999997543 577777778999999999986
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2.4e-19 Score=190.60 Aligned_cols=122 Identities=22% Similarity=0.291 Sum_probs=84.7
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+.+..+.+..+|.. +++|++|++++|.+... |. ..++|++|++++ +.+..+| .++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~-------~~~L~~L~l~~n~l~~l----~~---~~~~L~~L~L~~-----n~l~~lp-~~~ 150 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL-------PQSLKSLLVDNNNLKAL----SD---LPPLLEYLGVSN-----NQLEKLP-ELQ 150 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC-------CTTCCEEECCSSCCSCC----CS---CCTTCCEEECCS-----SCCSSCC-CCT
T ss_pred CCCCEEEccCCcCCccccc-------cCCCcEEECCCCccCcc----cC---CCCCCCEEECcC-----CCCCCCc-ccC
Confidence 5778888888877765532 46788888888875422 21 115788888887 4445566 478
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCcccccccc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPV 420 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 420 (683)
.+++|++|++++|. +..+|..+ .+|++|++++|. +..+| .++++++|++|++++|. +..+|.
T Consensus 151 ~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~ 212 (454)
T 1jl5_A 151 NSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPD 212 (454)
T ss_dssp TCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCC
T ss_pred CCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCC
Confidence 88888888888887 66777533 478888888876 66676 57888888888888774 334444
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.7e-19 Score=189.27 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=26.2
Q ss_pred cccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 614 IKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 614 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
.+..+..+++|+.|+|++|......+..+..+++|+.|++++||
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 34445566777777777765433233345556777777777665
No 55
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=199.74 Aligned_cols=209 Identities=22% Similarity=0.341 Sum_probs=156.4
Q ss_pred CchhHHHHHHHHHHHcCC--ceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhhhccCC-----------
Q 044935 23 DLVEFQSLMQHIQECVEG--EKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTAHNMGS----------- 89 (683)
Q Consensus 23 ~~~~~~~~~~~l~~~l~~--kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~~~~~----------- 89 (683)
...+.+.+.+.+++.+.+ +|+||||||||+.. . +.....|++||||||+..++..+..
T Consensus 216 ~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~-------l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L 286 (591)
T 1z6t_A 216 LPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--V-------LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSL 286 (591)
T ss_dssp CCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--H-------HHTTCSSCEEEEEESCGGGGTTCCSCEEEEECCSSC
T ss_pred CCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--H-------HHHhcCCCeEEEECCCcHHHHhcCCCceEeecCCCC
Confidence 345677888888888876 79999999998632 2 2233679999999999987754321
Q ss_pred --cchHHHHHHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhhhhccc--------ccc
Q 044935 90 --TNIIQLMFSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESEIWEHE--------VVK 159 (683)
Q Consensus 90 --~~~~~ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~~~~~~--------~~~ 159 (683)
.+..++|....+.. .....+.+.+|+++|+|+|+||+.+|+.++.+. ..|...++....... ...
T Consensus 287 ~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~ 361 (591)
T 1z6t_A 287 GKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDY 361 (591)
T ss_dssp CHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCC
T ss_pred CHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccch
Confidence 12334454444332 223346789999999999999999999998763 368777665322111 112
Q ss_pred ccchHHHHHhhcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHHhC-cHHHHHHHHHhcCCceeecCCCCCCeeEEehh
Q 044935 160 KGLLAPLLLSYNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMAQG-YLNEYFNILASSSFFQEFNADGDGEVYMCKMH 238 (683)
Q Consensus 160 ~~~~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g-~~~~~l~~L~~~~ll~~~~~~~~g~~~~~~mh 238 (683)
..+..++..||+.|+++.|.||+++|+||+++.++...++..|.+++ .....+++|++++|+.... ++....|+||
T Consensus 362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H 438 (591)
T 1z6t_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR---NGKSFRYYLH 438 (591)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE---ETTEEEEECC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec---CCCccEEEEc
Confidence 46889999999999999999999999999999999999999996542 3458899999999998542 3445568999
Q ss_pred HHHHHHHHHH
Q 044935 239 DLVHDLAQFI 248 (683)
Q Consensus 239 dl~~~~~~~~ 248 (683)
++++++++..
T Consensus 439 ~lv~~~~~~~ 448 (591)
T 1z6t_A 439 DLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999877
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.1e-19 Score=183.73 Aligned_cols=243 Identities=22% Similarity=0.179 Sum_probs=130.3
Q ss_pred EEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCC
Q 044935 277 LMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHL 356 (683)
Q Consensus 277 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L 356 (683)
+......+..+|..+ .++|+.|++++|.+. ...+..|.++++|++|++++|.++ .+...|..+..+++|
T Consensus 12 l~c~~~~l~~ip~~~------~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI------PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSL 80 (306)
T ss_dssp EECCSSCCSSCCSCC------CTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCC--EEEEEEHHHHSCSCC
T ss_pred EEcCCCCcccCCCCC------CCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccC--cccCccccccccccc
Confidence 334444455555443 345666777666642 223334566667777777663321 111224455566667
Q ss_pred cEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc--ccccccccceEecCCCccccccccccCCCCCCCCcccc
Q 044935 357 KYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ--GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSL 434 (683)
Q Consensus 357 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l 434 (683)
++|++++|. +..+|..+..+++|++|++++|. +..++. .+..+++|++|++++|......|..++.+++|+.+.
T Consensus 81 ~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-- 156 (306)
T 2z66_A 81 KYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-- 156 (306)
T ss_dssp CEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE--
T ss_pred CEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE--
Confidence 777777666 66666666666777777776665 444442 456666777777766643333333333322222111
Q ss_pred ccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEE
Q 044935 435 KKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRI 514 (683)
Q Consensus 435 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 514 (683)
|....+. ....+..+..+++|+.|++++|.+.+. .+..+..+++|++|++
T Consensus 157 -----l~~n~l~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 157 -----MAGNSFQ--------ENFLPDIFTELRNLTFLDLSQCQLEQL-----------------SPTAFNSLSSLQVLNM 206 (306)
T ss_dssp -----CTTCEEG--------GGEECSCCTTCTTCCEEECTTSCCCEE-----------------CTTTTTTCTTCCEEEC
T ss_pred -----CCCCccc--------cccchhHHhhCcCCCEEECCCCCcCCc-----------------CHHHhcCCCCCCEEEC
Confidence 1000000 001122344556666666666653221 1334556667777777
Q ss_pred eeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCC-CcceEEecCC
Q 044935 515 HEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLP-SLEDLHILGM 566 (683)
Q Consensus 515 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~-~L~~L~L~~~ 566 (683)
++|.+.. +++..+..+++|++|++++|.+.+..+. +..++ +|+.|+++++
T Consensus 207 ~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 207 SHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCCccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 7776655 4444566677777777777766555544 55553 6777777553
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4.3e-19 Score=194.41 Aligned_cols=118 Identities=21% Similarity=0.190 Sum_probs=91.2
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccC
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKN 352 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~ 352 (683)
.++.+.+.++.+..+|..+ .++|+.|++++|.+. .+|. .+++|++|+|++ +.+..+|. .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l------~~~L~~L~L~~N~l~----~lp~---~l~~L~~L~Ls~-----N~l~~lp~---~ 99 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL------PAHITTLVIPDNNLT----SLPA---LPPELRTLEVSG-----NQLTSLPV---L 99 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC------CTTCSEEEECSCCCS----CCCC---CCTTCCEEEECS-----CCCSCCCC---C
T ss_pred CCcEEEecCCCcCccChhh------CCCCcEEEecCCCCC----CCCC---cCCCCCEEEcCC-----CcCCcCCC---C
Confidence 4677888888888777665 368999999999864 2444 568899999998 55567776 6
Q ss_pred CCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCcccccccc
Q 044935 353 LLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPV 420 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 420 (683)
+++|++|++++|. +..+|. .+++|++|++++|. +..+|.. +++|++|++++|. +..+|.
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~ 158 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA 158 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC
Confidence 7899999999988 888887 67889999999887 7777764 4889999998883 344443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=7.1e-19 Score=187.24 Aligned_cols=241 Identities=20% Similarity=0.283 Sum_probs=170.2
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNL 353 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l 353 (683)
..+......+..+|..+ .++++.|++++|.+. ...+..|.++++|++|+|++ +.+..++ ..+..+
T Consensus 46 ~~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~-----n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI------STNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSR-----NHIRTIEIGAFNGL 111 (440)
T ss_dssp CEEECCSCCCSSCCSCC------CTTCSEEECCSCCCC---EECTTTTSSCSSCCEEECCS-----SCCCEECGGGGTTC
T ss_pred CEEEeCCCCcCcCCCCC------CCCCcEEEccCCcCC---eeCHHHhhCCCCCCEEECCC-----CcCCccChhhccCC
Confidence 34555566677777665 467888999998853 44556788899999999988 4455554 568888
Q ss_pred CCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 354 LHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
++|++|+|++|. +..+|. .+..+++|++|+|++|. +..+|. .+.++++|++|++++|..+..++..
T Consensus 112 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------- 179 (440)
T 3zyj_A 112 ANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEG---------- 179 (440)
T ss_dssp SSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTT----------
T ss_pred ccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcc----------
Confidence 999999999987 777775 57888999999999887 666654 5788899999998887555544431
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccE
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKE 511 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 511 (683)
.+..+++|+.|++++|.+... ..+..+++|+.
T Consensus 180 -----------------------------~~~~l~~L~~L~L~~n~l~~~-------------------~~~~~l~~L~~ 211 (440)
T 3zyj_A 180 -----------------------------AFEGLSNLRYLNLAMCNLREI-------------------PNLTPLIKLDE 211 (440)
T ss_dssp -----------------------------TTTTCSSCCEEECTTSCCSSC-------------------CCCTTCSSCCE
T ss_pred -----------------------------hhhcccccCeecCCCCcCccc-------------------cccCCCcccCE
Confidence 233456777777777764321 23567788888
Q ss_pred EEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCccccc
Q 044935 512 LRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIA 590 (683)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 590 (683)
|++++|.+.. ++|..+..+++|++|++++|.+....+. +..+++|+.|+|+++. +..++... ...
T Consensus 212 L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~ 277 (440)
T 3zyj_A 212 LDLSGNHLSA--IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDL-----------FTP 277 (440)
T ss_dssp EECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTT-----------TSS
T ss_pred EECCCCccCc--cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhH-----------hcc
Confidence 8888888776 5577888888888888888877665554 7788888888886643 22111111 124
Q ss_pred ccccccccccccc
Q 044935 591 FPKLKRLAFHTME 603 (683)
Q Consensus 591 ~~~L~~L~l~~~~ 603 (683)
+++|+.|++.+++
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 6777777665554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=185.06 Aligned_cols=243 Identities=20% Similarity=0.207 Sum_probs=138.6
Q ss_pred ccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccc-hHHhccc
Q 044935 301 LRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLP-EVLCELY 378 (683)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~ 378 (683)
.+.++..+..+. .+|..+. +++++|+|++ +.+..++ ..+.++++|++|+|++|. +..++ ..+.+++
T Consensus 45 ~~~v~c~~~~l~----~iP~~~~--~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLR----EVPDGIS--TNTRLLNLHE-----NQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCS----SCCSCCC--TTCSEEECCS-----CCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCS
T ss_pred CCEEEeCCCCcC----cCCCCCC--CCCcEEEccC-----CcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCc
Confidence 456666666543 2343332 5677788877 4444544 567778888888888877 55554 5577778
Q ss_pred CCcEEeccCccchhhccc-ccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHh
Q 044935 379 NLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEA 457 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~ 457 (683)
+|++|+|++|. +..+|. .+..+++|++|++++|.. ..+|..
T Consensus 113 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~------------------------------------ 154 (440)
T 3zyj_A 113 NLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPI-ESIPSY------------------------------------ 154 (440)
T ss_dssp SCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCC-CEECTT------------------------------------
T ss_pred cCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcc-cccCHH------------------------------------
Confidence 88888888776 666654 467777888888777732 222210
Q ss_pred HHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccce
Q 044935 458 RRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRD 537 (683)
Q Consensus 458 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 537 (683)
.+..+++|+.|++++|. .... +++..+..+++|++
T Consensus 155 ---~~~~l~~L~~L~l~~~~-----------------------------------------~l~~-i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 155 ---AFNRIPSLRRLDLGELK-----------------------------------------RLSY-ISEGAFEGLSNLRY 189 (440)
T ss_dssp ---TTTTCTTCCEEECCCCT-----------------------------------------TCCE-ECTTTTTTCSSCCE
T ss_pred ---HhhhCcccCEeCCCCCC-----------------------------------------Ccce-eCcchhhcccccCe
Confidence 12223344444444432 2221 22344555666666
Q ss_pred EeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccc
Q 044935 538 LYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGE 617 (683)
Q Consensus 538 L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 617 (683)
|++++|.+. .+|.+..+++|+.|+++++..-...+..+ ..+++|+.|++.+ +.+....+..
T Consensus 190 L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------~~l~~L~~L~L~~------n~l~~~~~~~ 250 (440)
T 3zyj_A 190 LNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSF------------QGLMHLQKLWMIQ------SQIQVIERNA 250 (440)
T ss_dssp EECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTT------------TTCTTCCEEECTT------CCCCEECTTS
T ss_pred ecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhh------------ccCccCCEEECCC------CceeEEChhh
Confidence 666666433 34556666666666665543111111111 1355666664333 3333444556
Q ss_pred cccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 618 IIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 618 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
+..+++|+.|+|++|......+..+..+++|+.|++++||
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 6677888888888876443333445667888888888776
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=2.5e-19 Score=190.42 Aligned_cols=306 Identities=18% Similarity=0.125 Sum_probs=147.8
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCce-------------eEEEecccCC
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCL-------------RAITLETYGW 338 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~ 338 (683)
..++.+.+..+.+..+|..+.+ +++|++|++++|.+ .+.+|..++++.+| +.|++++|
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~----L~~L~~L~l~~n~~---~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-- 81 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAEN----VKSKTEYYNAWSEW---ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-- 81 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHH---HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS--
T ss_pred ccchhhhcccCchhhCChhHhc----ccchhhhhccCCcc---cccCCcccccchhcchhhhhhhhccCCCEEEecCC--
Confidence 5677888888888777766655 88888888888764 23466667776664 77777774
Q ss_pred cccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCcccccc
Q 044935 339 DYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFL 418 (683)
Q Consensus 339 ~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 418 (683)
.+..+|.. .++|++|++++|. +..+|.. +++|++|++++|. +..+|.. .++|++|++++|.. ..+
T Consensus 82 ---~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l-~~l 146 (454)
T 1jl5_A 82 ---GLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL-EKL 146 (454)
T ss_dssp ---CCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC-SSC
T ss_pred ---ccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC-CCC
Confidence 33444442 2456666666665 5555542 2455555555554 3333321 14555555555532 234
Q ss_pred ccccCCCCCCCCcc----cccc----CccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCC
Q 044935 419 PVGIGELISLRNLG----SLKK----LNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRE 490 (683)
Q Consensus 419 p~~~~~l~~L~~l~----~l~~----L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 490 (683)
| .++.+++|+.+. .+.. ...|+.+.+....- .. .+ .+..+++|+.|++++|.+.+.
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l-~~----l~-~~~~l~~L~~L~l~~N~l~~l--------- 210 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL-EE----LP-ELQNLPFLTAIYADNNSLKKL--------- 210 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC-SS----CC-CCTTCTTCCEEECCSSCCSSC---------
T ss_pred c-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcC-Cc----Cc-cccCCCCCCEEECCCCcCCcC---------
Confidence 4 344444333221 0000 01222222222111 00 11 355667777777777664321
Q ss_pred CchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCee
Q 044935 491 NEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVK 570 (683)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~ 570 (683)
+ ..+++|++|++++|.+.. + |. +..+++|++|++++|.+.+ +|. .+++|+.|+++++.
T Consensus 211 ---------~---~~~~~L~~L~l~~n~l~~--l-p~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~--- 268 (454)
T 1jl5_A 211 ---------P---DLPLSLESIVAGNNILEE--L-PE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNY--- 268 (454)
T ss_dssp ---------C---CCCTTCCEEECCSSCCSS--C-CC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSC---
T ss_pred ---------C---CCcCcccEEECcCCcCCc--c-cc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCc---
Confidence 1 112477777777777664 5 33 6677777777777776543 333 23677777775543
Q ss_pred EecccccCCCCCCCCcccccccccccccccccccccccc----------cccccccccccC-CcccEEeecCCCCCCcCC
Q 044935 571 RVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWD----------FRTAIKGEIIIM-PRLSSLSIDDCPKLKALP 639 (683)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~----------~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp 639 (683)
+.+.+. .+++|+.|+++++. ++.+. +....-..+..+ ++|+.|++++|. ++.+|
T Consensus 269 -----l~~l~~--------~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp 333 (454)
T 1jl5_A 269 -----LTDLPE--------LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP 333 (454)
T ss_dssp -----CSCCCC--------CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCC
T ss_pred -----ccccCc--------ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccccc
Confidence 222111 23456666555442 22110 000000011123 488888888876 45577
Q ss_pred cCCCCCCCCceEEEeCCc
Q 044935 640 DRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 640 ~~l~~l~~L~~L~l~~c~ 657 (683)
.. +++|+.|++++|.
T Consensus 334 ~~---~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 334 AL---PPRLERLIASFNH 348 (454)
T ss_dssp CC---CTTCCEEECCSSC
T ss_pred cc---CCcCCEEECCCCc
Confidence 65 5788888888874
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.1e-20 Score=188.44 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=72.1
Q ss_pred cccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCC
Q 044935 287 VPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESE 366 (683)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 366 (683)
++......+..+++|+.|++++|.+. ...|..|.++++|++|+|++ +.+...+. +..+++|++|++++|.
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~-~~~l~~L~~L~Ls~n~- 91 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSS-----NVLYETLD-LESLSTLRTLDLNNNY- 91 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTT-----SCCEEEEE-ETTCTTCCEEECCSSE-
T ss_pred hhhhHHHHhccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCC-----CcCCcchh-hhhcCCCCEEECcCCc-
Confidence 33333333445667888888887653 34556677788888888877 34444443 7777888888888777
Q ss_pred ccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCcc
Q 044935 367 IKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNS 414 (683)
Q Consensus 367 ~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 414 (683)
+..+|. .++|++|++++|. +..++.. .+++|++|++++|..
T Consensus 92 l~~l~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKI 132 (317)
T ss_dssp EEEEEE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCC
T ss_pred cccccC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCC
Confidence 666553 3777888887776 5554432 356777787777743
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=8e-19 Score=175.30 Aligned_cols=219 Identities=22% Similarity=0.218 Sum_probs=142.5
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNL 353 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l 353 (683)
+.+......+..+|..+ .++|+.|++++|.+. ...+..|.++++|++|++++ +.+..+ |..++.+
T Consensus 14 ~~~~c~~~~l~~ip~~~------~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~-----n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI------PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHS-----NVLARIDAAAFTGL 79 (285)
T ss_dssp CEEECCSSCCSSCCTTC------CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCS-----SCCCEECTTTTTTC
T ss_pred eEEEcCcCCcccCCcCC------CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCC-----CccceeCHhhcCCc
Confidence 34445555566666543 567888888888753 33455677888888888887 444455 5677888
Q ss_pred CCCcEEeecCCCCcccc-chHHhcccCCcEEeccCccchhhc-ccccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 354 LHLKYLSLFGESEIKRL-PEVLCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
++|++|++++|..+..+ |..+..+++|++|++++|. +..+ |..+..+++|++|++++|.. ..+|.
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~----------- 146 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL-QALPD----------- 146 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCT-----------
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcc-cccCH-----------
Confidence 88888888888646655 5667788888888888877 4444 55677788888888887732 22221
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccE
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKE 511 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 511 (683)
..+..+++|+.|++++|.+...+ +..+..+++|++
T Consensus 147 ----------------------------~~~~~l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~ 181 (285)
T 1ozn_A 147 ----------------------------DTFRDLGNLTHLFLHGNRISSVP-----------------ERAFRGLHSLDR 181 (285)
T ss_dssp ----------------------------TTTTTCTTCCEEECCSSCCCEEC-----------------TTTTTTCTTCCE
T ss_pred ----------------------------hHhccCCCccEEECCCCcccccC-----------------HHHhcCccccCE
Confidence 11234456666666666532211 123556677777
Q ss_pred EEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCC
Q 044935 512 LRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGME 567 (683)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 567 (683)
|++++|.+.. ++|..+..+++|+.|++++|.+.+..+. +..+++|+.|++++++
T Consensus 182 L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 182 LLLHQNRVAH--VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EECCCCcccc--cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 7777777665 4466677777777777777766553333 6677777777775543
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=7.4e-20 Score=203.14 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=57.4
Q ss_pred ccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCc----cccchHHhc
Q 044935 301 LRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEI----KRLPEVLCE 376 (683)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~----~~lp~~i~~ 376 (683)
|++|+++++... ....++....++++|++|+|++|.+++.....++.....+++|++|++++|... ..++..+.+
T Consensus 140 L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 140 LETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp CCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred CcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 666666665410 111233334456666666666654432222113333445666666666666521 234444556
Q ss_pred ccCCcEEeccCccchhhcccccccccccceEecCC
Q 044935 377 LYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEG 411 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 411 (683)
+++|++|++++|. +..+|..+..+++|++|+++.
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECB
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccc
Confidence 6666666666655 455565566666666666653
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=3.3e-18 Score=170.85 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=41.3
Q ss_pred hcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCC
Q 044935 502 ALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGM 566 (683)
Q Consensus 502 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~ 566 (683)
.+..+++|++|++++|.+.. +++..+..+++|++|++++|.+....+. +..+++|+.|+++++
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred HhhCCcCCCEEECCCCcccc--cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 34456677777777777665 5455667777777777777765544433 666677777777554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.8e-20 Score=190.14 Aligned_cols=261 Identities=15% Similarity=0.130 Sum_probs=157.6
Q ss_pred ccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccchHHhcccC
Q 044935 301 LRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLPEVLCELYN 379 (683)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~ 379 (683)
++..+++.+. ....+...+..+++|++|+|++ +.+..++ ..++.+++|++|++++|. +..+++ +..+++
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~ 81 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLST 81 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECTT-----SCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTT
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECcC-----CccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCC
Confidence 4444555554 2344455567778899999998 4445554 678899999999999998 666665 889999
Q ss_pred CcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHH
Q 044935 380 LERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARR 459 (683)
Q Consensus 380 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~ 459 (683)
|++|++++|. +..+| .+++|++|++++|.. ..++..
T Consensus 82 L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l-~~~~~~-------------------------------------- 117 (317)
T 3o53_A 82 LRTLDLNNNY-VQELL----VGPSIETLHAANNNI-SRVSCS-------------------------------------- 117 (317)
T ss_dssp CCEEECCSSE-EEEEE----ECTTCCEEECCSSCC-SEEEEC--------------------------------------
T ss_pred CCEEECcCCc-ccccc----CCCCcCEEECCCCcc-CCcCcc--------------------------------------
Confidence 9999999887 66555 348899999988843 222211
Q ss_pred hccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchH-hhccccceE
Q 044935 460 AELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWI-MSLTNLRDL 538 (683)
Q Consensus 460 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L 538 (683)
.+++|+.|++++|.+... .+..+..+++|++|++++|.+.. +++..+ ..+++|++|
T Consensus 118 ----~~~~L~~L~l~~N~l~~~-----------------~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 118 ----RGQGKKNIYLANNKITML-----------------RDLDEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHL 174 (317)
T ss_dssp ----CCSSCEEEECCSSCCCSG-----------------GGBCTGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEE
T ss_pred ----ccCCCCEEECCCCCCCCc-----------------cchhhhccCCCCEEECCCCCCCc--ccHHHHhhccCcCCEE
Confidence 124556666666653321 12234455677777777766655 323333 356777777
Q ss_pred eecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCccccccccccccccccccccccccccccccccc
Q 044935 539 YLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEI 618 (683)
Q Consensus 539 ~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 618 (683)
++++|.+... +....+++|+.|+++++. +..++..+ ..+++|+.|+++++. ++ .+|..+
T Consensus 175 ~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L~~L~L~~N~-l~------~l~~~~ 233 (317)
T 3o53_A 175 NLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPEF------------QSAAGVTWISLRNNK-LV------LIEKAL 233 (317)
T ss_dssp ECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGGG------------GGGTTCSEEECTTSC-CC------EECTTC
T ss_pred ECCCCcCccc-ccccccccCCEEECCCCc-CCcchhhh------------cccCcccEEECcCCc-cc------chhhHh
Confidence 7777754433 444456777777775543 22222211 235666666544442 22 134445
Q ss_pred ccCCcccEEeecCCCCC-CcCCcCCCCCCCCceEEEeCCcch
Q 044935 619 IIMPRLSSLSIDDCPKL-KALPDRLLQKTTLQRLEIYGCPIL 659 (683)
Q Consensus 619 ~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~l 659 (683)
..+++|+.|++++|+.. ..+|..+..+++|+.+++++|+.+
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 56666777777766654 345555555666666666655443
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=181.88 Aligned_cols=252 Identities=17% Similarity=0.201 Sum_probs=187.6
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-c
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-I 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i 350 (683)
+.++.+.+.++.+..++.. .+.++++|++|++++|.+. ...|..|.++++|++|++++ +.+..+|.. +
T Consensus 52 ~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS---DLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSY-----NYLSNLSSSWF 120 (353)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCS-----SCCSSCCHHHH
T ss_pred ccCcEEECCCCcCcccCHH---HhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCC-----CcCCcCCHhHh
Confidence 5899999999998876653 2345999999999999864 44567799999999999999 566677766 8
Q ss_pred cCCCCCcEEeecCCCCccccch--HHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCccccccccccCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPE--VLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLPVGIGELIS 427 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 427 (683)
+.+++|++|++++|. +..+|. .+.++++|++|++++|..+..++ ..+.++++|++|++++|......|..++.+++
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 899999999999998 888887 68999999999999986566664 57899999999999999765555666665544
Q ss_pred CCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCC
Q 044935 428 LRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPP 507 (683)
Q Consensus 428 L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (683)
|+ .+.+.... ........+..+++|+.|++++|.+.+..... .......+
T Consensus 200 L~------------~L~l~~n~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------l~~~~~~~ 249 (353)
T 2z80_A 200 VS------------HLILHMKQ----HILLLEIFVDVTSSVECLELRDTDLDTFHFSE--------------LSTGETNS 249 (353)
T ss_dssp EE------------EEEEECSC----STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------CCC
T ss_pred CC------------eecCCCCc----cccchhhhhhhcccccEEECCCCccccccccc--------------cccccccc
Confidence 33 23333221 11222233456899999999999876543221 11223466
Q ss_pred CccEEEEeeecCCCC---ccCcchHhhccccceEeecCCCCCCCCCC--CCCCCCcceEEecCCC
Q 044935 508 NLKELRIHEYRGRRN---VVPINWIMSLTNLRDLYLSYCRNCEHLPP--LGKLPSLEDLHILGME 567 (683)
Q Consensus 508 ~L~~L~l~~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~ 567 (683)
.++.+++.++.+... .+ |.++..+++|++|++++|.+.. +|. ++.+++|+.|++++++
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHH-HHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred hhhccccccccccCcchhhh-HHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCC
Confidence 788888888776542 13 5677889999999999997764 554 5899999999997765
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.5e-19 Score=200.71 Aligned_cols=346 Identities=16% Similarity=0.063 Sum_probs=180.9
Q ss_pred eEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCcccc-ccchhhhcCCCceeEEEecccCCcccCcccccccccC
Q 044935 274 VLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSS-KVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKN 352 (683)
Q Consensus 274 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~ 352 (683)
++.+.+..+... ....+.....++++|++|++++|.+.... ..++..+..+++|+.|++++|.++......++..+.+
T Consensus 140 L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 140 LETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp CCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred CcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 667777665421 11122222335788888888887642211 1144455677888888888755432223355666677
Q ss_pred CCCCcEEeecCCCCccccchHHhcccCCcEEeccCccch---hhcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 353 LLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNL---RELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
+++|++|++++|. +..+|..+.++++|++|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCc
Confidence 7888888888877 6677777777888888877643211 122233344444444444433 1222333222222222
Q ss_pred Cc-------------cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEe----------ecCCCCCcccc
Q 044935 430 NL-------------GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHF----------CHSRDGDEEQA 486 (683)
Q Consensus 430 ~l-------------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~~~ 486 (683)
.+ .-+..+++|+.+.+.. .......+.....+++|+.|+++. |...
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~----~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~------- 365 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRN----VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV------- 365 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEG----GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-------
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccC----ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc-------
Confidence 11 0012333444444431 112233334445677778887773 3210
Q ss_pred cCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHh-hccccceEeecCC---CCCCCCCC-------CCCC
Q 044935 487 GRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIM-SLTNLRDLYLSYC---RNCEHLPP-------LGKL 555 (683)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~---~~~~~~~~-------l~~l 555 (683)
....+......+++|++|+++.+.+... . +..+. .+++|++|++++| ...+..|. +..+
T Consensus 366 --------~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 366 --------SQRGLIALAQGCQELEYMAVYVSDITNE-S-LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp --------CHHHHHHHHHHCTTCSEEEEEESCCCHH-H-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred --------CHHHHHHHHhhCccCeEEEeecCCccHH-H-HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 1112222333467788888865554432 1 33343 3777888888632 22332221 3457
Q ss_pred CCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCC
Q 044935 556 PSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKL 635 (683)
Q Consensus 556 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 635 (683)
++|+.|+++.|... ..+..+... ...+++|+.|++++|. ++.. ..+..+..+++|++|+|++|+..
T Consensus 436 ~~L~~L~L~~~~~~-l~~~~~~~~--------~~~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 436 KKLRRFAFYLRQGG-LTDLGLSYI--------GQYSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp TTCCEEEEECCGGG-CCHHHHHHH--------HHSCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCCEEEEESCCCB
T ss_pred CCCCEEEEecCCCC-ccHHHHHHH--------HHhCccceEeeccCCC-CCHH----HHHHHHhcCcccCeeeccCCCCc
Confidence 78888888655430 001111100 1136778888766553 3322 12333456788888888888732
Q ss_pred Cc-CCcCCCCCCCCceEEEeCCc
Q 044935 636 KA-LPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 636 ~~-lp~~l~~l~~L~~L~l~~c~ 657 (683)
.. ++.....+++|+.|++++|+
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHHhcCccCeeECcCCc
Confidence 11 34344457888888888886
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=2.7e-18 Score=183.42 Aligned_cols=239 Identities=21% Similarity=0.232 Sum_probs=161.5
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~ 354 (683)
.+...+.....+|..+ .++++.|++++|.+. ...+..|.++++|++|+|++ +.+..++ ..+..++
T Consensus 58 ~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~ 123 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI------PSNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGR-----NSIRQIEVGAFNGLA 123 (452)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCS-----SCCCEECTTTTTTCT
T ss_pred EEEECCCCcCccCCCC------CCCccEEECcCCcCc---eECHHHcCCCCCCCEEECCC-----CccCCcChhhccCcc
Confidence 4445555566666554 457888888888753 44566678888888888888 4444444 5677888
Q ss_pred CCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhccc-ccccccccceEecCCCccccccccc-cCCCCCCCCc
Q 044935 355 HLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLRFLPVG-IGELISLRNL 431 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l 431 (683)
+|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|. .+.++++|++|++++|..+..++.. +..+++|+.+
T Consensus 124 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 124 SLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 88888888887 6666643 6778888888888877 556654 5677888888888887666666542 3333333322
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccE
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKE 511 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 511 (683)
. |....+... ..+..+++|+.|++++|.+.+. .+..+..+++|+.
T Consensus 202 ~-------L~~n~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 202 N-------LGMCNIKDM-----------PNLTPLVGLEELEMSGNHFPEI-----------------RPGSFHGLSSLKK 246 (452)
T ss_dssp E-------CTTSCCSSC-----------CCCTTCTTCCEEECTTSCCSEE-----------------CGGGGTTCTTCCE
T ss_pred E-------CCCCccccc-----------ccccccccccEEECcCCcCccc-----------------CcccccCccCCCE
Confidence 1 111111100 1255677888888888874332 2456777888999
Q ss_pred EEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCC
Q 044935 512 LRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGME 567 (683)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 567 (683)
|++++|.+.. +++..+..+++|+.|++++|.+....+. +..+++|+.|++.+++
T Consensus 247 L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 9998888776 5577788888999999988876654444 7788889999887754
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=1.7e-20 Score=201.56 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=89.9
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccc-cchHHh-
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKR-LPEVLC- 375 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~i~- 375 (683)
.++|+.|+++++.+.. ......+..+++|++|++++|.++......++..+..+++|++|++++|. +.. .+..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH
T ss_pred CccceehhhhhcccCc--hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHH
Confidence 4678999999998642 22444578899999999999777655555788889999999999999998 554 333343
Q ss_pred ccc----CCcEEeccCccch----hhcccccccccccceEecCCCccc
Q 044935 376 ELY----NLERLDVRFCVNL----RELLQGIGKLRKLMYLDNEGTNSL 415 (683)
Q Consensus 376 ~L~----~L~~L~L~~~~~l----~~lp~~i~~l~~L~~L~l~~~~~~ 415 (683)
.++ +|++|++++|... ..+|..+..+++|++|++++|...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 466 7999999999733 256888999999999999999643
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.4e-18 Score=182.73 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=74.6
Q ss_pred cCCCCCccEEEEeeecCCCCccCcchHh-hccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCC
Q 044935 503 LGPPPNLKELRIHEYRGRRNVVPINWIM-SLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVES 581 (683)
Q Consensus 503 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 581 (683)
++.+++|+.|++++|.+.. .+|..+. .+++|+.|++++|.+.+. +....+++|+.|+++++. +..++..
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~------ 209 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPE------ 209 (487)
T ss_dssp GGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGG------
T ss_pred hcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHh------
Confidence 3445566666666666555 3344444 677888888888765543 445567777777776543 2222211
Q ss_pred CCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCC-CcCCcCCCCCCCCceEEEe
Q 044935 582 DTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKL-KALPDRLLQKTTLQRLEIY 654 (683)
Q Consensus 582 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~ 654 (683)
...+++|+.|+++++. +. .+|..+..+++|+.|++++|+.. ..+|..+..++.|+.++++
T Consensus 210 ------~~~l~~L~~L~Ls~N~-l~------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 ------FQSAAGVTWISLRNNK-LV------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ------GGGGTTCSEEECTTSC-CC------EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ------HcCCCCccEEEecCCc-Cc------ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 1235666666544432 22 14445666777777777777754 3455555556666666554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.9e-19 Score=179.90 Aligned_cols=159 Identities=19% Similarity=0.061 Sum_probs=89.1
Q ss_pred CCCCCcEEeecCCCCccccchHH--hcccCCcEEeccCccchhhcccccccc-----cccceEecCCCccccccccccCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVL--CELYNLERLDVRFCVNLRELLQGIGKL-----RKLMYLDNEGTNSLRFLPVGIGE 424 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~~~~ 424 (683)
.+++|++|++++|.....+|..+ ..+++|++|++++|. +...|..++.+ ++|++|++++|......|..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~--- 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ--- 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT---
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH---
Confidence 45666666666666223455544 566666666666655 44445555554 56666666665321111111
Q ss_pred CCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhc-
Q 044935 425 LISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEAL- 503 (683)
Q Consensus 425 l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 503 (683)
+..+++|+.|++++|.+.+ ...++..+
T Consensus 169 -------------------------------------~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~~ 196 (312)
T 1wwl_A 169 -------------------------------------VRVFPALSTLDLSDNPELG---------------ERGLISALC 196 (312)
T ss_dssp -------------------------------------CCCCSSCCEEECCSCTTCH---------------HHHHHHHSC
T ss_pred -------------------------------------hccCCCCCEEECCCCCcCc---------------chHHHHHHH
Confidence 2234455566666554211 11223333
Q ss_pred -CCCCCccEEEEeeecCCCC-ccCcchHhhccccceEeecCCCCCCCCC--CCCCCCCcceEEecCC
Q 044935 504 -GPPPNLKELRIHEYRGRRN-VVPINWIMSLTNLRDLYLSYCRNCEHLP--PLGKLPSLEDLHILGM 566 (683)
Q Consensus 504 -~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~ 566 (683)
..+++|++|++++|.+... .++...+..+++|++|++++|.+.+..| .+..+++|+.|+++++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 6677888888888776641 0212334567889999998887766553 3556777777777553
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=6.6e-19 Score=195.60 Aligned_cols=198 Identities=18% Similarity=0.080 Sum_probs=124.8
Q ss_pred CceEEEEEEecCCCCcccccchhh-hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNV-KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i 350 (683)
+.++++.+.++...... ...+ ..+++|++|++.+|... ....++..+.++++|++|++++|.+++.....++...
T Consensus 105 ~~L~~L~L~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDC---LELIAKSFKNFKVLVLSSCEGF-STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCBCCHHH---HHHHHHHCTTCCEEEEESCEEE-EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCeEEeeCcEEcHHH---HHHHHHhCCCCcEEeCCCcCCC-CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 57888888887654321 1222 24899999999988421 1122556566899999999999776554444555555
Q ss_pred cCCCCCcEEeecCCC-Cc--cccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCcc------ccccccc
Q 044935 351 KNLLHLKYLSLFGES-EI--KRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNS------LRFLPVG 421 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~-~~--~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~------~~~~p~~ 421 (683)
..+++|++|++++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|+++.+.. +..++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 678899999999885 12 22344346679999999999976888888888999999998766531 1223334
Q ss_pred cCCCCCCCCccc--------c----ccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEee
Q 044935 422 IGELISLRNLGS--------L----KKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFC 476 (683)
Q Consensus 422 ~~~l~~L~~l~~--------l----~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 476 (683)
+.++++|+.+.. + ..++.|+.+.+.... .. .......+..+++|+.|++++|
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGG
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCc
Confidence 444444443311 1 123455555554433 11 2223333456667777777665
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=8.6e-17 Score=176.20 Aligned_cols=258 Identities=21% Similarity=0.210 Sum_probs=190.5
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
..+++.|+++++.+. .+|..+. ++|++|++++ +.+..+|. .+++|++|+|++|. +..+|. .+
T Consensus 39 ~~~l~~L~ls~n~L~----~lp~~l~--~~L~~L~L~~-----N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l 100 (622)
T 3g06_A 39 NNGNAVLNVGESGLT----TLPDCLP--AHITTLVIPD-----NNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LP 100 (622)
T ss_dssp HHCCCEEECCSSCCS----CCCSCCC--TTCSEEEECS-----CCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CC
T ss_pred CCCCcEEEecCCCcC----ccChhhC--CCCcEEEecC-----CCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CC
Confidence 346899999999874 3454343 7999999999 56667887 57999999999998 889997 78
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHh
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEA 457 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~ 457 (683)
++|++|++++|. +..+|. .+++|+.|++++|. +..+|..+.+| +.+.+....- ..
T Consensus 101 ~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l~~L---------------~~L~Ls~N~l-~~---- 155 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVLPPGL---------------QELSVSDNQL-AS---- 155 (622)
T ss_dssp TTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCCCTTC---------------CEEECCSSCC-SC----
T ss_pred CCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCCCCCC---------------CEEECcCCcC-CC----
Confidence 999999999987 788877 67899999999984 56676543222 2222221100 00
Q ss_pred HHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccce
Q 044935 458 RRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRD 537 (683)
Q Consensus 458 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 537 (683)
.+ ..+.+|+.|++++|.+.. ++ ..+++|+.|++++|.+.. + |. .+++|+.
T Consensus 156 l~---~~~~~L~~L~L~~N~l~~------------------l~---~~~~~L~~L~Ls~N~l~~--l-~~---~~~~L~~ 205 (622)
T 3g06_A 156 LP---ALPSELCKLWAYNNQLTS------------------LP---MLPSGLQELSVSDNQLAS--L-PT---LPSELYK 205 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC------------------CC---CCCTTCCEEECCSSCCSC--C-CC---CCTTCCE
T ss_pred cC---CccCCCCEEECCCCCCCC------------------Cc---ccCCCCcEEECCCCCCCC--C-CC---ccchhhE
Confidence 00 134688999999987543 12 346899999999999877 6 33 3589999
Q ss_pred EeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccc
Q 044935 538 LYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGE 617 (683)
Q Consensus 538 L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 617 (683)
|++++|.+. .+|. .+++|+.|+++++. +.+.+ ..+++|+.|+++++ .++. +|.
T Consensus 206 L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~--------L~~lp--------~~l~~L~~L~Ls~N-~L~~------lp~- 258 (622)
T 3g06_A 206 LWAYNNRLT-SLPA--LPSGLKELIVSGNR--------LTSLP--------VLPSELKELMVSGN-RLTS------LPM- 258 (622)
T ss_dssp EECCSSCCS-SCCC--CCTTCCEEECCSSC--------CSCCC--------CCCTTCCEEECCSS-CCSC------CCC-
T ss_pred EECcCCccc-ccCC--CCCCCCEEEccCCc--------cCcCC--------CCCCcCcEEECCCC-CCCc------CCc-
Confidence 999999755 3443 35899999997653 33322 14789999977776 3443 333
Q ss_pred cccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 618 IIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 618 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
.+++|+.|++++|. ++.+|..+.++++|+.|++++|+-
T Consensus 259 --~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp --CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCC
T ss_pred --ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCC
Confidence 57899999999996 568999999999999999999974
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=2.8e-18 Score=175.86 Aligned_cols=236 Identities=16% Similarity=0.172 Sum_probs=119.6
Q ss_pred CceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCcc-c-cchHHhcccCCcEEeccCccchhhcccccccccc
Q 044935 326 TCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIK-R-LPEVLCELYNLERLDVRFCVNLRELLQGIGKLRK 403 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 403 (683)
++++.|++++ +.+...+..+..+++|++|++++|. +. . +|..+.++++|++|++++|......|..+..+++
T Consensus 70 ~~l~~L~l~~-----n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 70 QGVIAFRCPR-----SFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp TTCSEEECTT-----CEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred ccceEEEcCC-----ccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 5566666665 3333344445556666666666665 33 2 5555666666666666666533345555666666
Q ss_pred cceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEee-cCCCCC
Q 044935 404 LMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFC-HSRDGD 482 (683)
Q Consensus 404 L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~ 482 (683)
|++|++++|..+.. ...+..+..+++|+.|++++| .+.
T Consensus 144 L~~L~L~~~~~l~~--------------------------------------~~l~~~~~~~~~L~~L~l~~~~~l~--- 182 (336)
T 2ast_B 144 LVRLNLSGCSGFSE--------------------------------------FALQTLLSSCSRLDELNLSWCFDFT--- 182 (336)
T ss_dssp CSEEECTTCBSCCH--------------------------------------HHHHHHHHHCTTCCEEECCCCTTCC---
T ss_pred CCEEECCCCCCCCH--------------------------------------HHHHHHHhcCCCCCEEcCCCCCCcC---
Confidence 66666666522110 011122334455555555555 321
Q ss_pred cccccCCCCchhHHHHHhhhcCCCC-CccEEEEeeec--CCCCccCcchHhhccccceEeecCCCC-CCC-CCCCCCCCC
Q 044935 483 EEQAGRRENEEDEAERLLEALGPPP-NLKELRIHEYR--GRRNVVPINWIMSLTNLRDLYLSYCRN-CEH-LPPLGKLPS 557 (683)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~-~~~l~~l~~ 557 (683)
...++..+..++ +|++|++++|. .....+ +..+..+++|++|++++|.. ... ++.++.+++
T Consensus 183 -------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 183 -------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp -------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred -------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 112333444455 66666666663 221223 44555667777777777662 222 333666667
Q ss_pred cceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccC-CcccEEeecCCCCCC
Q 044935 558 LEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIM-PRLSSLSIDDCPKLK 636 (683)
Q Consensus 558 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~ 636 (683)
|+.|++++|..+ .+..+.. ...+++|+.|++.+| +.... +..+ .+|+.|++++|...+
T Consensus 249 L~~L~l~~~~~~--~~~~~~~---------l~~~~~L~~L~l~~~--i~~~~--------~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 249 LQHLSLSRCYDI--IPETLLE---------LGEIPTLKTLQVFGI--VPDGT--------LQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CCEEECTTCTTC--CGGGGGG---------GGGCTTCCEEECTTS--SCTTC--------HHHHHHHSTTSEESCCCSCC
T ss_pred CCEeeCCCCCCC--CHHHHHH---------HhcCCCCCEEeccCc--cCHHH--------HHHHHhhCcceEEecccCcc
Confidence 777777665422 1111101 124666666666655 22211 1122 235555677776655
Q ss_pred cCCcCCC
Q 044935 637 ALPDRLL 643 (683)
Q Consensus 637 ~lp~~l~ 643 (683)
..|..+.
T Consensus 308 ~~~~~~~ 314 (336)
T 2ast_B 308 IARPTIG 314 (336)
T ss_dssp TTCSSCS
T ss_pred ccCCccc
Confidence 5555443
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2e-18 Score=174.66 Aligned_cols=125 Identities=19% Similarity=0.155 Sum_probs=91.2
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhc-------CCCceeEEEecccCCcccCcccccc
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFD-------KLTCLRAITLETYGWDYNPIKEIPT 348 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~lp~ 348 (683)
.+.+..+.+ .+|..+.. . |+.|++++|.+.. ..+|..+. ++++|++|++++|.++ ..+|.
T Consensus 47 ~l~l~~n~l-~~p~~~~~----~--L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~ 113 (312)
T 1wwl_A 47 YLLKRVDTE-ADLGQFTD----I--IKSLSLKRLTVRA--ARIPSRILFGALRVLGISGLQELTLENLEVT----GTAPP 113 (312)
T ss_dssp THHHHCCTT-CCCHHHHH----H--HHHCCCCEEEEEE--EECBHHHHHHHHHHHTTSCCCEEEEEEEBCB----SCCCC
T ss_pred eEeeccccc-ccHHHHHH----H--HhhcccccccccC--CCcCHHHHHHHHHhcCcCCccEEEccCCccc----chhHH
Confidence 333444444 44555443 2 7788888877532 22444444 7899999999995433 25777
Q ss_pred cc--cCCCCCcEEeecCCCCccccchHHhcc-----cCCcEEeccCccchhhcc-cccccccccceEecCCCccc
Q 044935 349 NI--KNLLHLKYLSLFGESEIKRLPEVLCEL-----YNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSL 415 (683)
Q Consensus 349 ~i--~~l~~L~~L~L~~~~~~~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~ 415 (683)
.+ +.+++|++|++++|. +..+|..++.+ ++|++|++++|. +..+| ..++++++|++|++++|...
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred HHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcC
Confidence 66 889999999999998 77778888888 899999999998 55555 78899999999999998644
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.5e-16 Score=157.03 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=44.3
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCcccc-chHHhcccCCcEEeccCccchhhccccccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRL-PEVLCELYNLERLDVRFCVNLRELLQGIGK 400 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 400 (683)
+.++++|+.+++++ +.+..+|..+. ++|++|++++|. +..+ |..+.++++|++|++++|. +..+|.. +.
T Consensus 6 ~~~l~~l~~l~~~~-----~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-----RNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GT 75 (290)
T ss_dssp EECSTTCCEEECTT-----SCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SC
T ss_pred ccccCCccEEECCC-----CCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CC
Confidence 34455566666655 44455555443 456666666665 4433 3445666666666666555 4444433 55
Q ss_pred ccccceEecCCC
Q 044935 401 LRKLMYLDNEGT 412 (683)
Q Consensus 401 l~~L~~L~l~~~ 412 (683)
+++|++|++++|
T Consensus 76 l~~L~~L~Ls~N 87 (290)
T 1p9a_G 76 LPVLGTLDLSHN 87 (290)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcCCEEECCCC
Confidence 556666666555
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.1e-16 Score=161.22 Aligned_cols=190 Identities=19% Similarity=0.246 Sum_probs=138.8
Q ss_pred ccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhc
Q 044935 297 RMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCE 376 (683)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~ 376 (683)
.+++|+.|+++++.+.. ++ .+..+++|++|++++ +.+..++. +..+++|++|++++|. +..+|. +..
T Consensus 39 ~l~~L~~L~l~~~~i~~----l~-~~~~l~~L~~L~L~~-----n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT----IE-GVQYLNNLIGLELKD-----NQITDLAP-LKNLTKITELELSGNP-LKNVSA-IAG 105 (308)
T ss_dssp HHHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG-GTT
T ss_pred HcCCcCEEEeeCCCccC----ch-hhhccCCCCEEEccC-----CcCCCChh-HccCCCCCEEEccCCc-CCCchh-hcC
Confidence 37788888888887532 34 377888888888888 55556666 8888888888888888 777764 888
Q ss_pred ccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhH
Q 044935 377 LYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGE 456 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~ 456 (683)
+++|++|++++|. +..+|. +..+++|++|++++|.. ..++.
T Consensus 106 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~------------------------------------ 146 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP------------------------------------ 146 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG------------------------------------
T ss_pred CCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc------------------------------------
Confidence 8888888888887 666654 78888888888888732 22111
Q ss_pred hHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccc
Q 044935 457 ARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLR 536 (683)
Q Consensus 457 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 536 (683)
+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.. +++ +..+++|+
T Consensus 147 -----l~~l~~L~~L~l~~n~l~~~------------------~-~l~~l~~L~~L~l~~n~l~~--~~~--l~~l~~L~ 198 (308)
T 1h6u_A 147 -----LAGLTNLQYLSIGNAQVSDL------------------T-PLANLSKLTTLKADDNKISD--ISP--LASLPNLI 198 (308)
T ss_dssp -----GGGCTTCCEEECCSSCCCCC------------------G-GGTTCTTCCEEECCSSCCCC--CGG--GGGCTTCC
T ss_pred -----ccCCCCccEEEccCCcCCCC------------------h-hhcCCCCCCEEECCCCccCc--Chh--hcCCCCCC
Confidence 33456777777777764321 1 26677888888888888776 522 77888999
Q ss_pred eEeecCCCCCCCCCCCCCCCCcceEEecCCC
Q 044935 537 DLYLSYCRNCEHLPPLGKLPSLEDLHILGME 567 (683)
Q Consensus 537 ~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 567 (683)
+|++++|.+.+. +.+..+++|+.|+++++.
T Consensus 199 ~L~L~~N~l~~~-~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 199 EVHLKNNQISDV-SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECTTSCCCBC-GGGTTCTTCCEEEEEEEE
T ss_pred EEEccCCccCcc-ccccCCCCCCEEEccCCe
Confidence 999998876543 357888889999886643
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.3e-16 Score=157.78 Aligned_cols=62 Identities=23% Similarity=0.203 Sum_probs=40.7
Q ss_pred cCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCC
Q 044935 503 LGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGM 566 (683)
Q Consensus 503 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~ 566 (683)
+..+++|+.|++++|.+.. +++..+..+++|++|++++|.+.+..+. ++.+++|+.|++.++
T Consensus 153 ~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 3445566666666666655 5455567777788888877776655444 667777777777553
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=2.5e-18 Score=179.81 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=46.8
Q ss_pred hhccCCccEEEEeCCCCccc-cccchhhhcCCCceeEEEecccCCcccCccccccc-------ccCCCCCcEEeecCCCC
Q 044935 295 VKRMRRLRSLSVEGGEYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-------IKNLLHLKYLSLFGESE 366 (683)
Q Consensus 295 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-------i~~l~~L~~L~L~~~~~ 366 (683)
+..+++|++|++++|.+... ...++..+.++++|++|+|++|.+. .....+|.. +..+++|++|+|++|.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNA- 105 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC-ccccchhHHHHHHHHHHhhCCcccEEECCCCc-
Confidence 34466666666666654211 0112333555666666666664321 001122222 2455666666666665
Q ss_pred ccc-----cchHHhcccCCcEEeccCcc
Q 044935 367 IKR-----LPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 367 ~~~-----lp~~i~~L~~L~~L~L~~~~ 389 (683)
+.. +|..+.++++|++|+|++|.
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 333 55555666666666666655
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=8.5e-17 Score=155.99 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=114.5
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccC-cccccc-cccCCCCCcEEeecC-CCCccccc-hH
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNP-IKEIPT-NIKNLLHLKYLSLFG-ESEIKRLP-EV 373 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~lp~-~i~~l~~L~~L~L~~-~~~~~~lp-~~ 373 (683)
.++|+.|++++|.+. ...+..|.++++|++|++++ +. +..++. .+..+++|++|++++ |. +..+| ..
T Consensus 30 ~~~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~-----n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSI-----DVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDA 100 (239)
T ss_dssp CTTCCEEEEESCCCS---EECTTTTTTCTTCCEEEEEC-----CSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTS
T ss_pred CCcccEEEEeCCcce---EECHHHccCCCCCcEEeCCC-----CCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHH
Confidence 446778888877753 33344677777888888877 43 555654 567777888888877 55 66666 34
Q ss_pred HhcccCCcEEeccCccchhhcccccccccccc---eEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCC
Q 044935 374 LCELYNLERLDVRFCVNLRELLQGIGKLRKLM---YLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGG 450 (683)
Q Consensus 374 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~ 450 (683)
+.++++|++|++++|. +..+|. +..+++|+ +|++++|..+..+|..
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~----------------------------- 149 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN----------------------------- 149 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT-----------------------------
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcc-----------------------------
Confidence 6677777787777776 566665 66666666 7777776333333321
Q ss_pred CCChhHhHHhccccCCCCC-eEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeec-CCCCccCcch
Q 044935 451 VSDAGEARRAELEQKKNLL-KLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYR-GRRNVVPINW 528 (683)
Q Consensus 451 ~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 528 (683)
.+..+++|+ .|++++|.+.. ++......++|+.|++++|. +.. +++..
T Consensus 150 ----------~~~~l~~L~~~L~l~~n~l~~------------------i~~~~~~~~~L~~L~L~~n~~l~~--i~~~~ 199 (239)
T 2xwt_C 150 ----------AFQGLCNETLTLKLYNNGFTS------------------VQGYAFNGTKLDAVYLNKNKYLTV--IDKDA 199 (239)
T ss_dssp ----------TTTTTBSSEEEEECCSCCCCE------------------ECTTTTTTCEEEEEECTTCTTCCE--ECTTT
T ss_pred ----------cccchhcceeEEEcCCCCCcc------------------cCHhhcCCCCCCEEEcCCCCCccc--CCHHH
Confidence 122334555 55555554221 11111122466666666663 444 44555
Q ss_pred Hhhc-cccceEeecCCCCCCCCCCCCCCCCcceEEecCC
Q 044935 529 IMSL-TNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGM 566 (683)
Q Consensus 529 ~~~l-~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~ 566 (683)
+..+ ++|+.|++++|.+.. +|.. .+++|+.|++.++
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred hhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence 5666 666666666665443 2222 4556666666543
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=7.4e-16 Score=152.26 Aligned_cols=195 Identities=23% Similarity=0.246 Sum_probs=112.1
Q ss_pred ccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCccccchH-Hhccc
Q 044935 301 LRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRLPEV-LCELY 378 (683)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~ 378 (683)
.++++++++.+.. +|..+. ++|+.|++++ +.+..+|. .+..+++|++|++++|. +..+|.. +.+++
T Consensus 18 ~~~l~~~~~~l~~----ip~~~~--~~l~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 18 KNSVDCSSKKLTA----IPSNIP--ADTKKLDLQS-----NKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELK 85 (270)
T ss_dssp TTEEECTTSCCSS----CCSCCC--TTCSEEECCS-----SCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCT
T ss_pred CCEEEccCCCCCc----cCCCCC--CCCCEEECcC-----CCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCC
Confidence 4556666655432 232221 4566666666 33444443 46666666666666666 5555543 35566
Q ss_pred CCcEEeccCccchhhccc-ccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHh
Q 044935 379 NLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEA 457 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~ 457 (683)
+|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.
T Consensus 86 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~------------------------------------- 126 (270)
T 2o6q_A 86 NLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQL-KSLPP------------------------------------- 126 (270)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCC-CCCCT-------------------------------------
T ss_pred CCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCcc-CeeCH-------------------------------------
Confidence 66666666665 444443 345666666666666532 11111
Q ss_pred HHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccce
Q 044935 458 RRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRD 537 (683)
Q Consensus 458 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 537 (683)
..+..+++|+.|++++|.+...+ +..+..+++|++|++++|.+.. +++..+..+++|++
T Consensus 127 --~~~~~l~~L~~L~Ls~n~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 127 --RVFDSLTKLTYLSLGYNELQSLP-----------------KGVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKT 185 (270)
T ss_dssp --TTTTTCTTCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCE
T ss_pred --HHhCcCcCCCEEECCCCcCCccC-----------------HhHccCCcccceeEecCCcCcE--eChhHhccCCCcCE
Confidence 11223445556666655533211 1234566777777777777766 55666777888888
Q ss_pred EeecCCCCCCCCCC-CCCCCCcceEEecCCC
Q 044935 538 LYLSYCRNCEHLPP-LGKLPSLEDLHILGME 567 (683)
Q Consensus 538 L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 567 (683)
|++++|.+....+. +..+++|+.|++.+++
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 88888866554443 7778888888886543
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.2e-16 Score=169.53 Aligned_cols=229 Identities=14% Similarity=0.073 Sum_probs=147.3
Q ss_pred CCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecC
Q 044935 284 GTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFG 363 (683)
Q Consensus 284 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~ 363 (683)
...+|..+......+++|+.|++++|.+. ...|..|..+++|++|+|++| .+...+. ++.+++|++|+|++
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~-l~~l~~L~~L~Ls~ 89 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSN-----VLYETLD-LESLSTLRTLDLNN 89 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTS-----CCEEEEE-CTTCTTCCEEECCS
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCC-----CCCCCcc-cccCCCCCEEEecC
Confidence 33445554443344557888888887753 345566778888888888873 4444443 77788888888888
Q ss_pred CCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCe
Q 044935 364 ESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLREC 443 (683)
Q Consensus 364 ~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l 443 (683)
|. +..+|. .++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|+.+
T Consensus 90 N~-l~~l~~----~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------------ 149 (487)
T 3oja_A 90 NY-VQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL------------ 149 (487)
T ss_dssp SE-EEEEEE----CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE------------
T ss_pred Cc-CCCCCC----CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEE------------
Confidence 87 666664 2778888888776 5555432 45778888888775544445455444333322
Q ss_pred eEcCCCCCCChhHhHHhccc-cCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCC
Q 044935 444 WICGRGGVSDAGEARRAELE-QKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRN 522 (683)
Q Consensus 444 ~i~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 522 (683)
.+.+. ......+..+. .+++|+.|++++|.+.+. .....+++|+.|++++|.+..
T Consensus 150 ~Ls~N----~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~l~~L~~L~Ls~N~l~~- 205 (487)
T 3oja_A 150 DLKLN----EIDTVNFAELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSSNKLAF- 205 (487)
T ss_dssp ECTTS----CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCSSCCCE-
T ss_pred ECCCC----CCCCcChHHHhhhCCcccEEecCCCccccc-------------------cccccCCCCCEEECCCCCCCC-
Confidence 11110 11111223333 578888888888875431 233457889999999888877
Q ss_pred ccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCC
Q 044935 523 VVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGME 567 (683)
Q Consensus 523 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 567 (683)
+ |..+..+++|+.|++++|.+.+..+.++.+++|+.|++++++
T Consensus 206 -~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 206 -M-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -E-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -C-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 6 444778889999999988777644448888888888887654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=4.3e-16 Score=155.27 Aligned_cols=198 Identities=19% Similarity=0.130 Sum_probs=120.4
Q ss_pred ccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCCCCcEEeecCCCCccccchHHh
Q 044935 297 RMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLLHLKYLSLFGESEIKRLPEVLC 375 (683)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~ 375 (683)
++++++.++++++.+.. +|..+. +.+++|+|++ +.+..+ |..+..+++|++|++++|. +..+|.. +
T Consensus 8 ~l~~l~~l~~~~~~l~~----ip~~~~--~~l~~L~L~~-----N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA----LPPDLP--KDTTILHLSE-----NLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-G 74 (290)
T ss_dssp CSTTCCEEECTTSCCSS----CCSCCC--TTCCEEECTT-----SCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-S
T ss_pred ccCCccEEECCCCCCCc----CCCCCC--CCCCEEEcCC-----CcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-C
Confidence 36666667766665432 232221 4666777766 333333 3456667777777777766 6666653 6
Q ss_pred cccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChh
Q 044935 376 ELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAG 455 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~ 455 (683)
.+++|++|++++|. +..+|..+..+++|++|++++|.. ..+|..
T Consensus 75 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~---------------------------------- 118 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLPLG---------------------------------- 118 (290)
T ss_dssp CCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCC-CCCCSS----------------------------------
T ss_pred CCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcC-cccCHH----------------------------------
Confidence 66777777777665 566666666677777777766632 222211
Q ss_pred HhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhcccc
Q 044935 456 EARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNL 535 (683)
Q Consensus 456 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 535 (683)
.+..+++|+.|++++|.+...+ +..+..+++|+.|++++|.+.. +++..+..+++|
T Consensus 119 -----~~~~l~~L~~L~L~~N~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L 174 (290)
T 1p9a_G 119 -----ALRGLGELQELYLKGNELKTLP-----------------PGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENL 174 (290)
T ss_dssp -----TTTTCTTCCEEECTTSCCCCCC-----------------TTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTC
T ss_pred -----HHcCCCCCCEEECCCCCCCccC-----------------hhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCC
Confidence 1223345555555555543221 2234566778888888877776 656667778888
Q ss_pred ceEeecCCCCCCCCCCCCCCCCcceEEecCCC
Q 044935 536 RDLYLSYCRNCEHLPPLGKLPSLEDLHILGME 567 (683)
Q Consensus 536 ~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 567 (683)
++|++++|.+......+..+++|+.|++.+++
T Consensus 175 ~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 88888888766444447777788888886543
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=3.4e-18 Score=189.85 Aligned_cols=320 Identities=17% Similarity=0.141 Sum_probs=184.7
Q ss_pred hccCCccEEEEeCCCCccccccchhhhc-CCCceeEEEecccCCcccCccc--ccccccCCCCCcEEeecCCCCccc---
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFD-KLTCLRAITLETYGWDYNPIKE--IPTNIKNLLHLKYLSLFGESEIKR--- 369 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~--- 369 (683)
..+++|+.|+++++.+. ...+..+. .+++|++|+|++|. .+.. ++..+..+++|++|++++|. +..
T Consensus 102 ~~~~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~ 173 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVT---DDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESD-VDDVSG 173 (594)
T ss_dssp HHCTTCCEEEEESCBCC---HHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCE-EECCCG
T ss_pred HhCCCCCeEEeeCcEEc---HHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcch
Confidence 46899999999999753 22333343 68999999999852 2222 55555689999999999998 443
Q ss_pred --cchHHhcccCCcEEeccCcc-ch--hhcccccccccccceEecCCCccccccccccCCCCCCCCcc------------
Q 044935 370 --LPEVLCELYNLERLDVRFCV-NL--RELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLG------------ 432 (683)
Q Consensus 370 --lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~------------ 432 (683)
++.....+++|++|++++|. .+ ..++..+.++++|++|++++|.....+|..+..+++|+.+.
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 33333467899999999885 11 23333346689999999999966666777666666666553
Q ss_pred ------ccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCC
Q 044935 433 ------SLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPP 506 (683)
Q Consensus 433 ------~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (683)
.+..++.|+.+. ..... .....+..+..+++|+.|++++|.+.+ ..+...+..+
T Consensus 254 ~~~l~~~l~~~~~L~~Ls--~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~l~~----------------~~l~~~~~~~ 313 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLS--GFWDA--VPAYLPAVYSVCSRLTTLNLSYATVQS----------------YDLVKLLCQC 313 (594)
T ss_dssp HHHHHHHHHTCTTCCEEE--CCBTC--CGGGGGGGHHHHTTCCEEECTTCCCCH----------------HHHHHHHTTC
T ss_pred HHHHHHHHhcCCCccccc--CCccc--chhhHHHHHHhhCCCCEEEccCCCCCH----------------HHHHHHHhcC
Confidence 233344444431 11111 123344445578899999999887321 2233445567
Q ss_pred CCccEEEEeeecCCCCccCcchHhhccccceEeecCCC--------CCCC--CCCC-CCCCCcceE--------------
Q 044935 507 PNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCR--------NCEH--LPPL-GKLPSLEDL-------------- 561 (683)
Q Consensus 507 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------~~~~--~~~l-~~l~~L~~L-------------- 561 (683)
++|++|++++| .....+ +.....+++|++|++.+|. .... +..+ ..+++|+.|
T Consensus 314 ~~L~~L~l~~~-~~~~~l-~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGL-EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp TTCCEEEEEGG-GHHHHH-HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred CCcCEEeCcCc-cCHHHH-HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 77777777766 222112 2333356777777774421 1110 0001 124455555
Q ss_pred -----------Eec-----CCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccc-cCCcc
Q 044935 562 -----------HIL-----GMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEII-IMPRL 624 (683)
Q Consensus 562 -----------~L~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L 624 (683)
++. +|..+...+.. .........+++|+.|++++ +++... ...+. .+++|
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~------~~~~~l~~~~~~L~~L~L~~--~l~~~~-----~~~l~~~~~~L 458 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLD------IGFGAIVEHCKDLRRLSLSG--LLTDKV-----FEYIGTYAKKM 458 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTH------HHHHHHHHHCTTCCEEECCS--SCCHHH-----HHHHHHHCTTC
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchh------hHHHHHHhhCCCccEEeecC--cccHHH-----HHHHHHhchhc
Confidence 443 12221100000 00000022456666665543 222211 11222 37889
Q ss_pred cEEeecCCCCCCcCCcCC-CCCCCCceEEEeCCcc
Q 044935 625 SSLSIDDCPKLKALPDRL-LQKTTLQRLEIYGCPI 658 (683)
Q Consensus 625 ~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~ 658 (683)
+.|+|++|......+..+ ..+++|+.|++++|+.
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 999999987533322222 4589999999999985
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.1e-15 Score=151.80 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=39.3
Q ss_pred ceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcc-cccccccc
Q 044935 327 CLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELL-QGIGKLRK 403 (683)
Q Consensus 327 ~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~ 403 (683)
+|++|++++ +.+..++. .+..+++|++|++++|. +..++. .+.++++|++|++++|. +..++ ..+.++++
T Consensus 29 ~l~~L~ls~-----n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 29 STKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSS 101 (276)
T ss_dssp TCCEEECTT-----CCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTT
T ss_pred CccEEECCC-----CcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCcc
Confidence 455555555 33333332 45555555555555554 444332 35555555555555554 33332 34455555
Q ss_pred cceEecCCC
Q 044935 404 LMYLDNEGT 412 (683)
Q Consensus 404 L~~L~l~~~ 412 (683)
|++|++++|
T Consensus 102 L~~L~l~~n 110 (276)
T 2z62_A 102 LQKLVAVET 110 (276)
T ss_dssp CCEEECTTS
T ss_pred ccEEECCCC
Confidence 555555554
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=2.7e-16 Score=155.54 Aligned_cols=209 Identities=23% Similarity=0.240 Sum_probs=140.3
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccc-ccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQG-IGK 400 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~ 400 (683)
+..+++|+.|++++ +.+..++ .++.+++|++|++++|. +..++ .+.++++|++|++++|. +..+|.. +..
T Consensus 37 ~~~l~~L~~L~l~~-----~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 37 QNELNSIDQIIANN-----SDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp HHHHTTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred cccccceeeeeeCC-----CCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 44566777777777 3344443 36667777777777776 66655 36777777777777765 4444433 466
Q ss_pred ccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCC
Q 044935 401 LRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRD 480 (683)
Q Consensus 401 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 480 (683)
+++|++|++++|.. ..+|
T Consensus 108 l~~L~~L~L~~n~l-~~~~------------------------------------------------------------- 125 (272)
T 3rfs_A 108 LTNLKELVLVENQL-QSLP------------------------------------------------------------- 125 (272)
T ss_dssp CTTCCEEECTTSCC-CCCC-------------------------------------------------------------
T ss_pred CcCCCEEECCCCcC-CccC-------------------------------------------------------------
Confidence 77777777766632 1111
Q ss_pred CCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcc
Q 044935 481 GDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLE 559 (683)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~ 559 (683)
+..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+.+..+. ++.+++|+
T Consensus 126 -------------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 126 -------------------DGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp -------------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred -------------------HHHhccCCCCCEEECCCCccCc--cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 1123445677777777777665 6577788999999999999987765554 78999999
Q ss_pred eEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCC
Q 044935 560 DLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALP 639 (683)
Q Consensus 560 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 639 (683)
.|+++++. +.+..+. ....+++|+.|++.+++ +. +.+|+|+.|++.+|...+.+|
T Consensus 185 ~L~L~~N~--------l~~~~~~----~~~~l~~L~~L~l~~N~------~~-------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 185 DLRLYQNQ--------LKSVPDG----VFDRLTSLQYIWLHDNP------WD-------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp EEECCSSC--------CSCCCTT----TTTTCTTCCEEECCSSC------BC-------CCTTTTHHHHHHHHHTGGGBB
T ss_pred EEECCCCc--------CCccCHH----HHhCCcCCCEEEccCCC------cc-------ccCcHHHHHHHHHHhCCCccc
Confidence 99997654 2222211 12358889999766653 31 247889999999998888888
Q ss_pred cCCCCCCC
Q 044935 640 DRLLQKTT 647 (683)
Q Consensus 640 ~~l~~l~~ 647 (683)
..+..++.
T Consensus 240 ~~~~~~~~ 247 (272)
T 3rfs_A 240 NSAGSVAP 247 (272)
T ss_dssp CTTSCBCG
T ss_pred CcccccCC
Confidence 88765544
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.4e-16 Score=158.18 Aligned_cols=105 Identities=23% Similarity=0.239 Sum_probs=67.7
Q ss_pred CCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCccccc-hHHhc
Q 044935 299 RRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRLP-EVLCE 376 (683)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~~ 376 (683)
++|++|++++|.+. ...+..|.++++|++|++++ +.+..++. .++.+++|++|++++|. +..++ ..+.+
T Consensus 28 ~~l~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCCC---EECTTTTTTCTTCSEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECCCCccc---ccCHhHhccccCCcEEECCC-----CcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 45777777777643 33344567777777777777 44444443 56677777777777776 55444 45677
Q ss_pred ccCCcEEeccCccchhhccc-ccccccccceEecCCCc
Q 044935 377 LYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 413 (683)
+++|++|++++|. +..++. .++.+++|++|++++|.
T Consensus 99 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc
Confidence 7777777777766 444443 56777777777777764
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=9.1e-16 Score=151.61 Aligned_cols=200 Identities=25% Similarity=0.294 Sum_probs=154.0
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-cc
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-IK 351 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i~ 351 (683)
..+.+....+.+..+|..+ .++++.|++++|.+. ...+..|.++++|++|++++ +.+..+|.. +.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~-----n~l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI------PADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLND-----NKLQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC------CTTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCS-----SCCSCCCTTTTS
T ss_pred CCCEEEccCCCCCccCCCC------CCCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCC-----CccCeeChhhhc
Confidence 3456777777787777655 467999999999864 44456789999999999999 566677765 58
Q ss_pred CCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCccccccccccCCCCCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
.+++|++|++++|. +..+|. .+.++++|++|++++|. +..+| ..+..+++|++|++++|. +..+|..
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------- 151 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKG-------- 151 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT--------
T ss_pred CCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-CCccCHh--------
Confidence 89999999999998 777774 46899999999999988 66555 456899999999999984 3333321
Q ss_pred CccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCc
Q 044935 430 NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNL 509 (683)
Q Consensus 430 ~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 509 (683)
.+..+++|+.|++++|.+...+ +..+..+++|
T Consensus 152 -------------------------------~~~~l~~L~~L~L~~n~l~~~~-----------------~~~~~~l~~L 183 (270)
T 2o6q_A 152 -------------------------------VFDKLTSLKELRLYNNQLKRVP-----------------EGAFDKLTEL 183 (270)
T ss_dssp -------------------------------TTTTCTTCCEEECCSSCCSCCC-----------------TTTTTTCTTC
T ss_pred -------------------------------HccCCcccceeEecCCcCcEeC-----------------hhHhccCCCc
Confidence 1334567788888887654322 2346678899
Q ss_pred cEEEEeeecCCCCccCcchHhhccccceEeecCCCCCC
Q 044935 510 KELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCE 547 (683)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 547 (683)
++|++++|.+.. +++..+..+++|+.|++++|+..-
T Consensus 184 ~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 184 KTLKLDNNQLKR--VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECCCCcCCc--CCHHHhccccCCCEEEecCCCeeC
Confidence 999999998877 767778889999999999997543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=6.1e-16 Score=149.90 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=23.9
Q ss_pred ccccC-CcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCcc
Q 044935 617 EIIIM-PRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCPI 658 (683)
Q Consensus 617 ~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 658 (683)
.+..+ ++|+.|++++|+ ++.+|.. .+++|+.|++++|..
T Consensus 199 ~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC--
T ss_pred HhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCccC
Confidence 34455 677777777765 4456554 467777777776653
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.2e-16 Score=163.58 Aligned_cols=227 Identities=19% Similarity=0.186 Sum_probs=161.3
Q ss_pred eEEEEEEecCCCCcccccchhhhcc--CCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 274 VLHLMLTIDEGTSVPISIWNNVKRM--RRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 274 ~~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
.+++.+..+.+. +.. +.++ ++++.|++.+|.+. ...+. +.++++|++|++++|.++. ..+|..+.
T Consensus 49 ~~~l~l~~~~~~--~~~----~~~~~~~~l~~L~l~~n~l~---~~~~~-~~~~~~L~~L~L~~~~l~~---~~~~~~~~ 115 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDV----TGRLLSQGVIAFRCPRSFMD---QPLAE-HFSPFRVQHMDLSNSVIEV---STLHGILS 115 (336)
T ss_dssp SSEEECTTCBCC--HHH----HHHHHHTTCSEEECTTCEEC---SCCCS-CCCCBCCCEEECTTCEECH---HHHHHHHT
T ss_pred heeeccccccCC--HHH----HHhhhhccceEEEcCCcccc---ccchh-hccCCCCCEEEccCCCcCH---HHHHHHHh
Confidence 445555555443 222 2335 88999999999753 33333 5678999999999954321 12777788
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchh--hcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLR--ELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
.+++|++|++++|......|..++++++|++|++++|..+. .+|..+.++++|++|++++|..+..
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~------------ 183 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------------ 183 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------------
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh------------
Confidence 99999999999998444778889999999999999995465 4777788999999999998832221
Q ss_pred CccccccCccCCCeeEcCCCCCCChhHhHHhccccCC-CCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCC
Q 044935 430 NLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKK-NLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPN 508 (683)
Q Consensus 430 ~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
...+..+..++ +|+.|++++|...- ....++..+..+++
T Consensus 184 --------------------------~~~~~~~~~l~~~L~~L~l~~~~~~~--------------~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 184 --------------------------KHVQVAVAHVSETITQLNLSGYRKNL--------------QKSDLSTLVRRCPN 223 (336)
T ss_dssp --------------------------HHHHHHHHHSCTTCCEEECCSCGGGS--------------CHHHHHHHHHHCTT
T ss_pred --------------------------HHHHHHHHhcccCCCEEEeCCCcccC--------------CHHHHHHHHhhCCC
Confidence 11123345667 88889988883100 11445566667899
Q ss_pred ccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCC--CCCCCCCCCCcceEEecCC
Q 044935 509 LKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCE--HLPPLGKLPSLEDLHILGM 566 (683)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~L~~~ 566 (683)
|++|++++|...+... +..+..+++|++|++++|.... .+..++.+++|+.|++.+|
T Consensus 224 L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9999999998433324 5677889999999999996221 1223778999999999887
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.6e-15 Score=152.81 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=147.6
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++++.+.++.+..++ . +..+++|+.|++++|.+. . ++. +..+++|++|++++ +.+..++ .+.
T Consensus 41 ~~L~~L~l~~~~i~~l~-~----~~~l~~L~~L~L~~n~i~---~-~~~-~~~l~~L~~L~L~~-----n~l~~~~-~~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-G----VQYLNNLIGLELKDNQIT---D-LAP-LKNLTKITELELSG-----NPLKNVS-AIA 104 (308)
T ss_dssp HTCCEEECTTSCCCCCT-T----GGGCTTCCEEECCSSCCC---C-CGG-GTTCCSCCEEECCS-----CCCSCCG-GGT
T ss_pred CCcCEEEeeCCCccCch-h----hhccCCCCEEEccCCcCC---C-Chh-HccCCCCCEEEccC-----CcCCCch-hhc
Confidence 57899999998887765 3 345999999999999864 2 344 88999999999999 4455565 589
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
.+++|++|++++|. +..+|. +..+++|++|++++|. +..++. +..+++|++|++++|.. ..++.
T Consensus 105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~----------- 168 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV-SDLTP----------- 168 (308)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-----------
T ss_pred CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC-CCChh-----------
Confidence 99999999999999 888887 9999999999999997 777765 88999999999999832 22221
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccE
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKE 511 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 511 (683)
+..+++|+.|++++|.+.+. ..+..+++|++
T Consensus 169 ------------------------------l~~l~~L~~L~l~~n~l~~~-------------------~~l~~l~~L~~ 199 (308)
T 1h6u_A 169 ------------------------------LANLSKLTTLKADDNKISDI-------------------SPLASLPNLIE 199 (308)
T ss_dssp ------------------------------GTTCTTCCEEECCSSCCCCC-------------------GGGGGCTTCCE
T ss_pred ------------------------------hcCCCCCCEEECCCCccCcC-------------------hhhcCCCCCCE
Confidence 23446677777777764331 11556788888
Q ss_pred EEEeeecCCCCccCcchHhhccccceEeecCCCCCC
Q 044935 512 LRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCE 547 (683)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 547 (683)
|++++|.+.. + + .+..+++|+.|++++|.+..
T Consensus 200 L~L~~N~l~~--~-~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 200 VHLKNNQISD--V-S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECTTSCCCB--C-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred EEccCCccCc--c-c-cccCCCCCCEEEccCCeeec
Confidence 8888888776 4 2 36788888888888886543
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=5.1e-17 Score=168.03 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=32.6
Q ss_pred chhhhcCCCceeEEEecccCCcccCcccccccccCCC-CCcEEeecCCCCccc-cchHHhcc-----cCCcEEeccCcc
Q 044935 318 LPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLL-HLKYLSLFGESEIKR-LPEVLCEL-----YNLERLDVRFCV 389 (683)
Q Consensus 318 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~~-lp~~i~~L-----~~L~~L~L~~~~ 389 (683)
+|.++...++|++|+|++|.++......+...+..++ +|++|++++|. +.. .+..+..+ ++|++|+|++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 4444444444555555553333222222224444555 55555555555 332 23334443 555555555554
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=153.14 Aligned_cols=203 Identities=18% Similarity=0.075 Sum_probs=96.9
Q ss_pred CceeEEEecccCCcccCcccccccc--cCCCCCcEEeecCCCCccccc----hHHhcccCCcEEeccCccchhhcccccc
Q 044935 326 TCLRAITLETYGWDYNPIKEIPTNI--KNLLHLKYLSLFGESEIKRLP----EVLCELYNLERLDVRFCVNLRELLQGIG 399 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~lp~~i--~~l~~L~~L~L~~~~~~~~lp----~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 399 (683)
++|++|++++|.+. ...|..+ ..+++|++|++++|......| ..+..+++|++|++++|......|..++
T Consensus 91 ~~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 91 SRLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp SCCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred CceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 44666666663322 2344444 556666666666665222222 2234566666666666652222234556
Q ss_pred cccccceEecCCCccccc--cccc--cCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEe
Q 044935 400 KLRKLMYLDNEGTNSLRF--LPVG--IGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHF 475 (683)
Q Consensus 400 ~l~~L~~L~l~~~~~~~~--~p~~--~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 475 (683)
.+++|++|++++|..... ++.. ++.+++|+ .+.+... ............+..+++|+.|++++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~------------~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQ------------NLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCC------------SCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCC------------EEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC
Confidence 666666666666643221 1111 11111111 1111110 00111111112235566777777777
Q ss_pred ecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCC
Q 044935 476 CHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKL 555 (683)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l 555 (683)
|.+.+..+.. ...+..+++|++|++++|.+.. + |..+ +++|+.|++++|.+.+ +|.+..+
T Consensus 234 N~l~~~~p~~--------------~~~~~~~~~L~~L~Ls~N~l~~--l-p~~~--~~~L~~L~Ls~N~l~~-~~~~~~l 293 (310)
T 4glp_A 234 NSLRATVNPS--------------APRCMWSSALNSLNLSFAGLEQ--V-PKGL--PAKLRVLDLSSNRLNR-APQPDEL 293 (310)
T ss_dssp SCCCCCCCSC--------------CSSCCCCTTCCCEECCSSCCCS--C-CSCC--CSCCSCEECCSCCCCS-CCCTTSC
T ss_pred CCCCccchhh--------------HHhccCcCcCCEEECCCCCCCc--h-hhhh--cCCCCEEECCCCcCCC-CchhhhC
Confidence 7654432110 0111123577777777777665 5 3333 2677777777775543 3445666
Q ss_pred CCcceEEecC
Q 044935 556 PSLEDLHILG 565 (683)
Q Consensus 556 ~~L~~L~L~~ 565 (683)
++|+.|++++
T Consensus 294 ~~L~~L~L~~ 303 (310)
T 4glp_A 294 PEVDNLTLDG 303 (310)
T ss_dssp CCCSCEECSS
T ss_pred CCccEEECcC
Confidence 7777777754
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=153.06 Aligned_cols=181 Identities=14% Similarity=0.010 Sum_probs=118.2
Q ss_pred CceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHH--hcccCCcEEeccCccchhhcc----cccc
Q 044935 326 TCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVL--CELYNLERLDVRFCVNLRELL----QGIG 399 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i--~~L~~L~~L~L~~~~~l~~lp----~~i~ 399 (683)
..++.|.+.++.+++..+..++.. ..+.+|++|++++|...+..|..+ ..+++|++|++++|......| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 346778888766554444444433 235679999999998555677766 889999999999887333322 3345
Q ss_pred cccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCC
Q 044935 400 KLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSR 479 (683)
Q Consensus 400 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 479 (683)
.+++|++|++++|......|. .+..+++|+.|++++|.+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~----------------------------------------~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCE----------------------------------------QVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTT----------------------------------------SCCCCTTCCEEECCSCTTC
T ss_pred hccCCCEEEeeCCCcchhhHH----------------------------------------HhccCCCCCEEECCCCCCc
Confidence 788999999988854222222 2334567788888888632
Q ss_pred CCCcccccCCCCchhHHHHHhh--hcCCCCCccEEEEeeecCCCCccCcc----hHhhccccceEeecCCCCCCCCCC-C
Q 044935 480 DGDEEQAGRRENEEDEAERLLE--ALGPPPNLKELRIHEYRGRRNVVPIN----WIMSLTNLRDLYLSYCRNCEHLPP-L 552 (683)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~-l 552 (683)
+ ...++. .+..+++|++|++++|.+.. + +. .+..+++|++|++++|.+.+..|. +
T Consensus 183 ~---------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 183 G---------------ERGLMAALCPHKFPAIQNLALRNTGMET--P-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp H---------------HHHHHTTSCTTSSCCCCSCBCCSSCCCC--H-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred c---------------chhhhHHHhhhcCCCCCEEECCCCCCCc--h-HHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 1 112222 23577889999999888765 3 22 346778999999999987766443 4
Q ss_pred CCC---CCcceEEecC
Q 044935 553 GKL---PSLEDLHILG 565 (683)
Q Consensus 553 ~~l---~~L~~L~L~~ 565 (683)
+.+ ++|++|++++
T Consensus 245 ~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 245 PRCMWSSALNSLNLSF 260 (310)
T ss_dssp SSCCCCTTCCCEECCS
T ss_pred HhccCcCcCCEEECCC
Confidence 433 5666666644
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=6.9e-16 Score=161.19 Aligned_cols=246 Identities=17% Similarity=0.095 Sum_probs=153.7
Q ss_pred CceEEEEEEecCCCCc-ccccchhhhccCCccEEEEeCCCCccccccchhh-------hcCCCceeEEEecccCCcccCc
Q 044935 272 KKVLHLMLTIDEGTSV-PISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQL-------FDKLTCLRAITLETYGWDYNPI 343 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~l~~L~~L~L~~~~~~~~~~ 343 (683)
..++.+.+.++.+... +..+...+.++++|++|++++|.+..+...+|.. +..+++|++|+|++|.++....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 5688888888876542 2223344567999999999998654444444544 4789999999999977765555
Q ss_pred ccccccccCCCCCcEEeecCCCCcc-----ccchHHhcc---------cCCcEEeccCccch-hhcc---cccccccccc
Q 044935 344 KEIPTNIKNLLHLKYLSLFGESEIK-----RLPEVLCEL---------YNLERLDVRFCVNL-RELL---QGIGKLRKLM 405 (683)
Q Consensus 344 ~~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L---------~~L~~L~L~~~~~l-~~lp---~~i~~l~~L~ 405 (683)
..+|..+..+++|++|+|++|. +. .++..+..+ ++|++|++++|... ..+| ..+..+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 5688899999999999999998 54 234445555 89999999999732 2444 4677899999
Q ss_pred eEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCccc
Q 044935 406 YLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQ 485 (683)
Q Consensus 406 ~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 485 (683)
+|++++|..... ++ ....+..+..+++|+.|++++|.+.
T Consensus 191 ~L~L~~n~l~~~---g~--------------------------------~~l~~~~l~~~~~L~~L~Ls~n~l~------ 229 (386)
T 2ca6_A 191 TVKMVQNGIRPE---GI--------------------------------EHLLLEGLAYCQELKVLDLQDNTFT------ 229 (386)
T ss_dssp EEECCSSCCCHH---HH--------------------------------HHHHHTTGGGCTTCCEEECCSSCCH------
T ss_pred EEECcCCCCCHh---HH--------------------------------HHHHHHHhhcCCCccEEECcCCCCC------
Confidence 999999843210 00 0001113344556666666665421
Q ss_pred ccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCcc--CcchHhh--ccccceEeecCCCCCC----CCCC-C-CCC
Q 044935 486 AGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVV--PINWIMS--LTNLRDLYLSYCRNCE----HLPP-L-GKL 555 (683)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~--l~~L~~L~l~~~~~~~----~~~~-l-~~l 555 (683)
......++..+..+++|++|++++|.+..... .+..+.. +++|++|++++|.+.. .+|. + ..+
T Consensus 230 -------~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 230 -------HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp -------HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred -------cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 11124455555566666666666665443100 0223322 5666666666665544 2333 2 445
Q ss_pred CCcceEEecCC
Q 044935 556 PSLEDLHILGM 566 (683)
Q Consensus 556 ~~L~~L~L~~~ 566 (683)
++|+.|++++|
T Consensus 303 ~~L~~L~l~~N 313 (386)
T 2ca6_A 303 PDLLFLELNGN 313 (386)
T ss_dssp TTCCEEECTTS
T ss_pred CCceEEEccCC
Confidence 66666666554
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.7e-14 Score=148.16 Aligned_cols=237 Identities=15% Similarity=0.131 Sum_probs=148.5
Q ss_pred cEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCccccch-HHhcccC
Q 044935 302 RSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRLPE-VLCELYN 379 (683)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~ 379 (683)
++++.+++.+.. +|..+ .++++.|+|++ +.++.+|. .|.++++|++|+|++|...+.+|. .+.++++
T Consensus 12 ~~v~C~~~~Lt~----iP~~l--~~~l~~L~Ls~-----N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESKVTE----IPSDL--PRNAIELRFVL-----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTTCCS----CCTTC--CTTCSEEEEES-----CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCCCCc----cCcCc--CCCCCEEEccC-----CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 567888877633 44433 35788999988 66778885 578899999999999985566764 4678888
Q ss_pred CcEEeccCccchhhcc-cccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhH
Q 044935 380 LERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEAR 458 (683)
Q Consensus 380 L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~ 458 (683)
|+++...++..+..+| ..+..+++|++|++++|. +..+|...
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~------------------------------------ 123 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVH------------------------------------ 123 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCT------------------------------------
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchh------------------------------------
Confidence 7765444333476664 556888999999988873 23333210
Q ss_pred HhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHh-hhcCCC-CCccEEEEeeecCCCCccCcchHhhccccc
Q 044935 459 RAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLL-EALGPP-PNLKELRIHEYRGRRNVVPINWIMSLTNLR 536 (683)
Q Consensus 459 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 536 (683)
+....++..+++..+.... .++ ..+..+ ..++.|++++|.+.. +++. .....+|+
T Consensus 124 ---~~~~~~l~~l~l~~~~~i~-----------------~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~-~f~~~~L~ 180 (350)
T 4ay9_X 124 ---KIHSLQKVLLDIQDNINIH-----------------TIERNSFVGLSFESVILWLNKNGIQE--IHNS-AFNGTQLD 180 (350)
T ss_dssp ---TCCBSSCEEEEEESCTTCC-----------------EECTTSSTTSBSSCEEEECCSSCCCE--ECTT-SSTTEEEE
T ss_pred ---hcccchhhhhhhccccccc-----------------cccccchhhcchhhhhhccccccccC--CChh-hccccchh
Confidence 0112234455555433111 011 122333 468888888888776 6343 33556788
Q ss_pred eEeecCCCCCCCCCC--CCCCCCcceEEecCCCCeeEecccccCCCCCCCCccccccccccccccccccccccccccccc
Q 044935 537 DLYLSYCRNCEHLPP--LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAI 614 (683)
Q Consensus 537 ~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 614 (683)
+|++.+|...+.+|. ++.+++|+.|+++++. +...++ ..|.+|+.|.+.++.+++..+
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~--------l~~lp~-------~~~~~L~~L~~l~~~~l~~lP----- 240 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTR--------IHSLPS-------YGLENLKKLRARSTYNLKKLP----- 240 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSC--------CCCCCS-------SSCTTCCEEECTTCTTCCCCC-----
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCC--------cCccCh-------hhhccchHhhhccCCCcCcCC-----
Confidence 888887666666665 7888888888886542 222221 135666666666665555433
Q ss_pred ccccccCCcccEEeecC
Q 044935 615 KGEIIIMPRLSSLSIDD 631 (683)
Q Consensus 615 ~~~~~~l~~L~~L~l~~ 631 (683)
.+..+++|+.+++.+
T Consensus 241 --~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 --TLEKLVALMEASLTY 255 (350)
T ss_dssp --CTTTCCSCCEEECSC
T ss_pred --CchhCcChhhCcCCC
Confidence 244677888887765
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=4.3e-14 Score=137.88 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=40.8
Q ss_pred cCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCC
Q 044935 503 LGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGM 566 (683)
Q Consensus 503 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~ 566 (683)
+..+++|++|++++|.+.. +++..+..+++|++|++++|.+....+. +..+++|+.|++.++
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred hccCCcccEEECcCCcCCc--cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 3445566666666666655 5455667777777777777766654443 677777777777553
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=2.3e-16 Score=163.12 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=57.7
Q ss_pred EEecccCCcccCcc-cccccccCCCCCcEEeecCCCCccccc-----hHHhccc-CCcEEeccCccchhhcccccccc--
Q 044935 331 ITLETYGWDYNPIK-EIPTNIKNLLHLKYLSLFGESEIKRLP-----EVLCELY-NLERLDVRFCVNLRELLQGIGKL-- 401 (683)
Q Consensus 331 L~L~~~~~~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~~lp-----~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l-- 401 (683)
++++. +.+. .+|..+....+|++|++++|. +...+ ..+.+++ +|++|+|++|......+..+..+
T Consensus 3 ~~ls~-----n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTL-----HPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EECCC-----CTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccc-----ccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 45666 4444 345555555669999999999 77665 5678888 99999999997333335556554
Q ss_pred ---cccceEecCCCccc
Q 044935 402 ---RKLMYLDNEGTNSL 415 (683)
Q Consensus 402 ---~~L~~L~l~~~~~~ 415 (683)
++|++|++++|...
T Consensus 77 ~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TSCTTCCEEECCSSCGG
T ss_pred ccCCCccEEECcCCcCC
Confidence 89999999999643
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.5e-14 Score=144.15 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=60.7
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+++|+.|++++|.+.. ++. +..+++|++|++++ +.+..++. +..+++|++|++++|. +..+|. +..+
T Consensus 45 l~~L~~L~l~~~~i~~----~~~-~~~l~~L~~L~L~~-----n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS----VQG-IQYLPNVTKLFLNG-----NKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCC----CTT-GGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred cCcccEEEccCCCccc----Chh-HhcCCCCCEEEccC-----CccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 6666667766665422 222 55666666666666 34444444 6666666666666666 555554 6666
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
++|++|++++|. +..+ ..+..+++|++|++++|
T Consensus 112 ~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN 144 (291)
T ss_dssp TTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSS
T ss_pred CCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCC
Confidence 666666666665 4444 34566666666666665
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=5.5e-14 Score=137.09 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=28.8
Q ss_pred cCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCC
Q 044935 503 LGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCE 547 (683)
Q Consensus 503 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 547 (683)
+..+++|++|++++|.+.. +++..+..+++|+.|++++|++..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQS--VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCc--cCHHHHhCCCCCCEEEeeCCceeC
Confidence 4455666777777766665 545566777778888887776543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=4.8e-14 Score=140.55 Aligned_cols=169 Identities=24% Similarity=0.280 Sum_probs=105.1
Q ss_pred hcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKL 401 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 401 (683)
+..+++|+.|++++ +.+..++. ++.+++|++|++++|. +..++. +.++++|++|++++|. +..+| .+..+
T Consensus 42 ~~~l~~L~~L~l~~-----~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANN-----SDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDL 111 (291)
T ss_dssp HHHHHTCCEEECTT-----SCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTC
T ss_pred hhhcCcccEEEccC-----CCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccC
Confidence 34566777777777 44445543 6777778888887777 666666 7777778888887776 55554 37777
Q ss_pred cccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC
Q 044935 402 RKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG 481 (683)
Q Consensus 402 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 481 (683)
++|++|++++|.. ..++ .+..+++|+.|++++|.+.+
T Consensus 112 ~~L~~L~L~~n~i-~~~~-----------------------------------------~l~~l~~L~~L~l~~n~l~~- 148 (291)
T 1h6t_A 112 KKLKSLSLEHNGI-SDIN-----------------------------------------GLVHLPQLESLYLGNNKITD- 148 (291)
T ss_dssp TTCCEEECTTSCC-CCCG-----------------------------------------GGGGCTTCCEEECCSSCCCC-
T ss_pred CCCCEEECCCCcC-CCCh-----------------------------------------hhcCCCCCCEEEccCCcCCc-
Confidence 7777887777632 1111 12234556666666665322
Q ss_pred CcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceE
Q 044935 482 DEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDL 561 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 561 (683)
...+..+++|+.|++++|.+.. +++ +..+++|+.|++++|.+.. ++.+..+++|+.|
T Consensus 149 ------------------~~~l~~l~~L~~L~L~~N~l~~--~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 149 ------------------ITVLSRLTKLDTLSLEDNQISD--IVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp ------------------CGGGGGCTTCSEEECCSSCCCC--CGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred ------------------chhhccCCCCCEEEccCCcccc--chh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 1234556667777777666655 422 5666777777777765433 4556667777777
Q ss_pred EecCC
Q 044935 562 HILGM 566 (683)
Q Consensus 562 ~L~~~ 566 (683)
+++++
T Consensus 206 ~l~~n 210 (291)
T 1h6t_A 206 ELFSQ 210 (291)
T ss_dssp EEEEE
T ss_pred ECcCC
Confidence 77553
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=8.3e-14 Score=143.04 Aligned_cols=237 Identities=15% Similarity=0.106 Sum_probs=164.4
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~ 354 (683)
.+.-.++.+..+|..+ .++++.|++++|.+. ...+..|.++++|++|+|++|.+ .+.+|. .|.+++
T Consensus 13 ~v~C~~~~Lt~iP~~l------~~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i----~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL------PRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSNLP 79 (350)
T ss_dssp EEEEESTTCCSCCTTC------CTTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTT----CCEECTTSBCSCT
T ss_pred EEEecCCCCCccCcCc------CCCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCC----CCccChhHhhcch
Confidence 3455666778788765 467999999999863 43445789999999999999432 244553 578898
Q ss_pred CCcEE-eecCCCCccccc-hHHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCccccccccccCCCCCCCCc
Q 044935 355 HLKYL-SLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNL 431 (683)
Q Consensus 355 ~L~~L-~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 431 (683)
+|+.+ .+++|. +..+| ..+..+++|++|++++|. +..+|. .+....++..|++.++..+..+|...
T Consensus 80 ~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~--------- 148 (350)
T 4ay9_X 80 KLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS--------- 148 (350)
T ss_dssp TCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS---------
T ss_pred hhhhhhcccCCc-ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccc---------
Confidence 88764 455566 77775 567899999999999987 666664 34566778888887765555555321
Q ss_pred cccccCccCCCeeEcCCCCCCChhHhHHhcccc-CCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCcc
Q 044935 432 GSLKKLNLLRECWICGRGGVSDAGEARRAELEQ-KKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLK 510 (683)
Q Consensus 432 ~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 510 (683)
+.. ...++.|++++|.+.. ++.......+|+
T Consensus 149 ------------------------------f~~~~~~l~~L~L~~N~i~~------------------i~~~~f~~~~L~ 180 (350)
T 4ay9_X 149 ------------------------------FVGLSFESVILWLNKNGIQE------------------IHNSAFNGTQLD 180 (350)
T ss_dssp ------------------------------STTSBSSCEEEECCSSCCCE------------------ECTTSSTTEEEE
T ss_pred ------------------------------hhhcchhhhhhccccccccC------------------CChhhccccchh
Confidence 111 1346677777776432 234444566899
Q ss_pred EEEEee-ecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccc
Q 044935 511 ELRIHE-YRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVI 589 (683)
Q Consensus 511 ~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (683)
.|.+.+ +.... +|+..|..+++|+.|++++|.+.. +|. +.+.+|+.|.+.++..++.++. ..
T Consensus 181 ~l~l~~~n~l~~--i~~~~f~~l~~L~~LdLs~N~l~~-lp~-~~~~~L~~L~~l~~~~l~~lP~-------------l~ 243 (350)
T 4ay9_X 181 ELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIHS-LPS-YGLENLKKLRARSTYNLKKLPT-------------LE 243 (350)
T ss_dssp EEECTTCTTCCC--CCTTTTTTEECCSEEECTTSCCCC-CCS-SSCTTCCEEECTTCTTCCCCCC-------------TT
T ss_pred HHhhccCCcccC--CCHHHhccCcccchhhcCCCCcCc-cCh-hhhccchHhhhccCCCcCcCCC-------------ch
Confidence 999975 44555 767788999999999999997554 444 3467788888877776655442 22
Q ss_pred cccccccccccc
Q 044935 590 AFPKLKRLAFHT 601 (683)
Q Consensus 590 ~~~~L~~L~l~~ 601 (683)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 578888887754
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=2.9e-14 Score=156.05 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=108.9
Q ss_pred ccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhc
Q 044935 297 RMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCE 376 (683)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~ 376 (683)
.+++|+.|++++|.+.. ++ .+..+++|+.|+|++ +.+..++. +..+++|++|+|++|. +..+|. +..
T Consensus 41 ~L~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~Ls~-----N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-l~~ 107 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS----VQ-GIQYLPNVTKLFLNG-----NKLTDIKP-LTNLKNLGWLFLDENK-IKDLSS-LKD 107 (605)
T ss_dssp HHTTCCCCBCTTCCCCC----CT-TGGGCTTCCEEECTT-----SCCCCCGG-GGGCTTCCEEECCSSC-CCCCTT-STT
T ss_pred cCCCCCEEECcCCCCCC----Ch-HHccCCCCCEEEeeC-----CCCCCChh-hccCCCCCEEECcCCC-CCCChh-hcc
Confidence 36777777777776532 33 266777777777777 44445554 6777777777777776 666663 777
Q ss_pred ccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhH
Q 044935 377 LYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGE 456 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~ 456 (683)
+++|++|+|++|. +..+ ..+..|++|+.|++++|.. ..+
T Consensus 108 l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l-~~l-------------------------------------- 146 (605)
T 1m9s_A 108 LKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKI-TDI-------------------------------------- 146 (605)
T ss_dssp CTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCC-CCC--------------------------------------
T ss_pred CCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCcc-CCc--------------------------------------
Confidence 7777777777776 5554 3466777777777776621 111
Q ss_pred hHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccc
Q 044935 457 ARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLR 536 (683)
Q Consensus 457 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 536 (683)
..+..+++|+.|++++|.+.+. +. +..+++|+.|+|++|.+.. + ..+..+++|+
T Consensus 147 ---~~l~~l~~L~~L~Ls~N~l~~~------------------~~-l~~l~~L~~L~Ls~N~i~~--l--~~l~~l~~L~ 200 (605)
T 1m9s_A 147 ---TVLSRLTKLDTLSLEDNQISDI------------------VP-LAGLTKLQNLYLSKNHISD--L--RALAGLKNLD 200 (605)
T ss_dssp ---GGGGSCTTCSEEECCSSCCCCC------------------GG-GTTCTTCCEEECCSSCCCB--C--GGGTTCTTCS
T ss_pred ---hhhcccCCCCEEECcCCcCCCc------------------hh-hccCCCCCEEECcCCCCCC--C--hHHccCCCCC
Confidence 1233456777777777764331 11 5667777777777777665 3 2466777777
Q ss_pred eEeecCCCCCC
Q 044935 537 DLYLSYCRNCE 547 (683)
Q Consensus 537 ~L~l~~~~~~~ 547 (683)
.|+|++|.+..
T Consensus 201 ~L~L~~N~l~~ 211 (605)
T 1m9s_A 201 VLELFSQECLN 211 (605)
T ss_dssp EEECCSEEEEC
T ss_pred EEEccCCcCcC
Confidence 77777776554
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=6.9e-14 Score=153.06 Aligned_cols=100 Identities=25% Similarity=0.323 Sum_probs=44.2
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+++|+.|++++|.+.. ++. +..+++|+.|+|++| .+..+| .+..+++|++|+|++|. +..+|. +..+
T Consensus 64 l~~L~~L~Ls~N~l~~----~~~-l~~l~~L~~L~Ls~N-----~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~-l~~l 130 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTD----IKP-LTNLKNLGWLFLDEN-----KIKDLS-SLKDLKKLKSLSLEHNG-ISDING-LVHL 130 (605)
T ss_dssp CTTCCEEECTTSCCCC----CGG-GGGCTTCCEEECCSS-----CCCCCT-TSTTCTTCCEEECTTSC-CCCCGG-GGGC
T ss_pred CCCCCEEEeeCCCCCC----Chh-hccCCCCCEEECcCC-----CCCCCh-hhccCCCCCEEEecCCC-CCCCcc-ccCC
Confidence 4445555555444321 111 444445555555442 222222 34444455555555444 444432 4444
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
++|+.|+|++|. +..+ ..+..+++|+.|++++|
T Consensus 131 ~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 131 PQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS
T ss_pred CccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC
Confidence 555555554443 3333 33444445555554444
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=7.7e-14 Score=130.51 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=51.1
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+++|+.|++++|.+. .+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+
T Consensus 43 l~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~l~~n-----~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 43 MNSLTYITLANINVT----DLT-GIEYAHNIKDLTINNI-----HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHTCCEEEEESSCCS----CCT-TGGGCTTCSEEEEESC-----CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred cCCccEEeccCCCcc----ChH-HHhcCCCCCEEEccCC-----CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 555555555555542 123 2455555555555552 222222 34555555555555555222244445555
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
++|++|++++|......|..+..+++|++|++++|
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 55555555555432334444555555555555555
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=4.2e-13 Score=126.79 Aligned_cols=68 Identities=34% Similarity=0.435 Sum_probs=40.9
Q ss_pred cCcccccccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcccc-cccccccceEecCCC
Q 044935 341 NPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEGT 412 (683)
Q Consensus 341 ~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 412 (683)
+.+..+|..+ ..+|++|++++|. +..+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC
Confidence 4445555443 3467777777766 555554 34666777777777665 5555543 456667777776666
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=4.7e-14 Score=138.28 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=44.4
Q ss_pred hcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCC
Q 044935 502 ALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGM 566 (683)
Q Consensus 502 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~ 566 (683)
.+..+++|+.|++++|.+.. + + .+..+++|+.|++++|.+.+. +.+..+++|+.|+++++
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~--~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKS--I-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCB--C-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred hhcCcccccEEECCCCcCCC--C-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 35566777777777777766 4 3 577888888888888876654 66888888888888654
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1.9e-13 Score=127.75 Aligned_cols=126 Identities=12% Similarity=0.158 Sum_probs=79.1
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
..++.+.+.++.+..++ .+ ..+++|++|++++|.+. .++ .+..+++|++|++++|.++ ...|..++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l----~~l~~L~~L~l~~n~~~----~~~-~l~~l~~L~~L~l~~n~l~----~~~~~~l~ 109 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GI----EYAHNIKDLTINNIHAT----NYN-PISGLSNLERLRIMGKDVT----SDKIPNLS 109 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TG----GGCTTCSEEEEESCCCS----CCG-GGTTCTTCCEEEEECTTCB----GGGSCCCT
T ss_pred CCccEEeccCCCccChH-HH----hcCCCCCEEEccCCCCC----cch-hhhcCCCCCEEEeECCccC----cccChhhc
Confidence 46677777777666555 23 23777777777777532 122 4666777777777774332 12455666
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
.+++|++|++++|......|..++++++|++|++++|..+..+| .+..+++|++|++++|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 77777777777776333456667777777777777765455555 5667777777777766
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=9.5e-14 Score=150.15 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=22.6
Q ss_pred cEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCC
Q 044935 510 KELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHL 549 (683)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 549 (683)
+.|++++|.+.. + |..+..+++|+.|++++|.+.+..
T Consensus 210 ~~L~Ls~N~l~~--l-p~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 210 IFFRCRENRITH--I-PENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp EEEECCSSCCCC--C-CGGGGGSCTTEEEECCSSSCCHHH
T ss_pred eEEecCCCccee--c-CHHHhcCCCCCEEEeeCCcCCCcC
Confidence 666666666665 5 444555666666666666655443
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=1.7e-13 Score=148.12 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=124.1
Q ss_pred CCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhccc
Q 044935 299 RRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELY 378 (683)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~ 378 (683)
.+++.|++++|.+.. +|..+ +++|++|+|++ +.+..+| ..+++|++|++++|. +..+|. +.+
T Consensus 59 ~~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~-----N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~-- 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS----LPDNL--PPQITVLEITQ-----NALISLP---ELPASLEYLDACDNR-LSTLPE-LPA-- 120 (571)
T ss_dssp TTCSEEECCSSCCSC----CCSCC--CTTCSEEECCS-----SCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--
T ss_pred CCccEEEeCCCCCCc----cCHhH--cCCCCEEECcC-----CCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--
Confidence 378888988887642 44433 36788999988 5556677 457888999998887 777887 655
Q ss_pred CCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhH
Q 044935 379 NLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEAR 458 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~ 458 (683)
+|++|++++|. +..+|. .+++|++|++++|.. ..+|.
T Consensus 121 ~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l-~~lp~-------------------------------------- 157 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQL-TMLPE-------------------------------------- 157 (571)
T ss_dssp TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC-SCCCC--------------------------------------
T ss_pred CCCEEECCCCc-CCCCCC---cCccccEEeCCCCcc-CcCCC--------------------------------------
Confidence 88999998887 666776 678888898888732 22322
Q ss_pred HhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhcccc---
Q 044935 459 RAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNL--- 535 (683)
Q Consensus 459 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L--- 535 (683)
.+++|+.|++++|.+.+ ++. +. ++|+.|++++|.+.. + |. +.. +|
T Consensus 158 -----~l~~L~~L~Ls~N~L~~------------------lp~-l~--~~L~~L~Ls~N~L~~--l-p~-~~~--~L~~~ 205 (571)
T 3cvr_A 158 -----LPTSLEVLSVRNNQLTF------------------LPE-LP--ESLEALDVSTNLLES--L-PA-VPV--RNHHS 205 (571)
T ss_dssp -----CCTTCCEEECCSSCCSC------------------CCC-CC--TTCCEEECCSSCCSS--C-CC-CC--------
T ss_pred -----cCCCcCEEECCCCCCCC------------------cch-hh--CCCCEEECcCCCCCc--h-hh-HHH--hhhcc
Confidence 12467778888777543 122 32 789999999988876 6 33 333 66
Q ss_pred ----ceEeecCCCCCCCCCC-CCCCCCcceEEecCCC
Q 044935 536 ----RDLYLSYCRNCEHLPP-LGKLPSLEDLHILGME 567 (683)
Q Consensus 536 ----~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 567 (683)
+.|++++|.+.. +|. +..+++|+.|+++++.
T Consensus 206 ~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 206 EETEIFFRCRENRITH-IPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp --CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSS
T ss_pred cccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCc
Confidence 999999997765 554 7779999999996654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=5.6e-15 Score=160.72 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=51.6
Q ss_pred cCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCC-------------CccccchHHhcccCCcEEe-ccCc
Q 044935 323 DKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGES-------------EIKRLPEVLCELYNLERLD-VRFC 388 (683)
Q Consensus 323 ~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~-------------~~~~lp~~i~~L~~L~~L~-L~~~ 388 (683)
...++|+.|+|++ +.++.+|..++.|++|+.|++++|. ..+..|..++.+++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~-----n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSV-----EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCH-----HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCCh-----hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 4566777777777 5666777777777777777776553 2445566677777777777 4443
Q ss_pred cchhhccc------ccccc--cccceEecCCC
Q 044935 389 VNLRELLQ------GIGKL--RKLMYLDNEGT 412 (683)
Q Consensus 389 ~~l~~lp~------~i~~l--~~L~~L~l~~~ 412 (683)
. +..++. .+..+ ..|+.|++++|
T Consensus 421 ~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n 451 (567)
T 1dce_A 421 Y-LDDLRSKFLLENSVLKMEYADVRVLHLAHK 451 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHTTCSEEECTTS
T ss_pred c-cchhhhhhhhcccccccCccCceEEEecCC
Confidence 2 333322 11111 24777777777
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=6.4e-15 Score=160.26 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=76.8
Q ss_pred CccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCc
Q 044935 508 NLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGS 586 (683)
Q Consensus 508 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 586 (683)
.|+.|++++|.+.. + |. ++.+++|+.|++++|.+. .+|. ++.+++|+.|+|+++. +.+.+
T Consensus 442 ~L~~L~Ls~n~l~~--l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~--------l~~lp------ 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--L-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA--------LENVD------ 502 (567)
T ss_dssp TCSEEECTTSCCSS--C-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC--------CCCCG------
T ss_pred CceEEEecCCCCCC--C-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC--------CCCCc------
Confidence 47777777777766 5 44 777888888888887665 4444 7777788888875532 22211
Q ss_pred cccccccccccccccccccccccccccc-ccccccCCcccEEeecCCCCCCcCCcCC----CCCCCCceEEE
Q 044935 587 SVIAFPKLKRLAFHTMEELEEWDFRTAI-KGEIIIMPRLSSLSIDDCPKLKALPDRL----LQKTTLQRLEI 653 (683)
Q Consensus 587 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l 653 (683)
....+++|+.|++++ +.+++.. |..+..+++|+.|+|++|+. +.+|... ..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~------N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCN------NRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCS------SCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCC------CCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 123467777774443 3343333 66777888888888888874 4444432 23678887753
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=9.7e-14 Score=136.07 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=55.8
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+.++..+.+.++.+.. ++ .+..+++|++|++++ +.+..+| .++.+++|++|++++|. +..+|. +.++
T Consensus 18 l~~l~~l~l~~~~i~~----~~-~~~~l~~L~~L~l~~-----n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD----LV-SQKELSGVQNFNGDN-----SNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHTCSCTTS----EE-CHHHHTTCSEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHhcCCCccc----cc-chhhcCcCcEEECcC-----CCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 4445555555554321 22 245566666666666 3344454 45666666666666665 666655 6666
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
++|++|++++|. +..+|.... ++|++|++++|
T Consensus 85 ~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N 116 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNN 116 (263)
T ss_dssp SSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSS
T ss_pred CCCCEEECCCCc-cCCcCcccc--CcccEEEccCC
Confidence 666666666665 555543222 66666666665
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=2.7e-12 Score=122.05 Aligned_cols=75 Identities=25% Similarity=0.331 Sum_probs=41.2
Q ss_pred eEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhc-ccccccccccce
Q 044935 329 RAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLREL-LQGIGKLRKLMY 406 (683)
Q Consensus 329 ~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~ 406 (683)
+.+++++ +.+..+|..+. .+|+.|++++|. +..+|. .+..+++|++|+|++|. +..+ |..+.++++|++
T Consensus 14 ~~v~c~~-----~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRG-----KGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTT-----SCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCE
T ss_pred CEEEcCC-----CCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCE
Confidence 3455555 44455555443 456666666665 554443 45566666666666655 3333 455566666666
Q ss_pred EecCCC
Q 044935 407 LDNEGT 412 (683)
Q Consensus 407 L~l~~~ 412 (683)
|++++|
T Consensus 85 L~Ls~N 90 (220)
T 2v9t_B 85 LVLYGN 90 (220)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 666655
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=9.3e-13 Score=124.36 Aligned_cols=119 Identities=27% Similarity=0.358 Sum_probs=73.0
Q ss_pred EEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-ccCCCCC
Q 044935 278 MLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-IKNLLHL 356 (683)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i~~l~~L 356 (683)
....+....+|..+ .++|+.|++++|.+. ...+..|.++++|++|++++ +.+..+|.. +..+++|
T Consensus 13 ~c~~~~l~~~p~~~------~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~-----n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 13 ECYSQGRTSVPTGI------PAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGG-----NKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp ECCSSCCSSCCSCC------CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCS-----SCCCCCCTTTTTTCTTC
T ss_pred EecCCCccCCCCCC------CCCCcEEEcCCCccC---cCChhhhcccccCcEEECCC-----CccCccChhhcCCCCCc
Confidence 33444444455443 456777777777643 33444566777777777777 444455543 4667777
Q ss_pred cEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccc-cccccccceEecCCC
Q 044935 357 KYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEGT 412 (683)
Q Consensus 357 ~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 412 (683)
++|++++|. +..+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 79 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 79 TYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC
Confidence 777777776 5555543 5667777777777765 5555543 466777777777666
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=4.9e-12 Score=120.28 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=35.8
Q ss_pred EEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccc--hHHhcccCCcEEeccCccchhhccc-ccccccccce
Q 044935 330 AITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLP--EVLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMY 406 (683)
Q Consensus 330 ~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~ 406 (683)
.+++++ +.+..+|..+. ..+++|++++|. +..++ ..+.++++|++|+|++|. +..++. .+.++++|++
T Consensus 15 ~l~~s~-----n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 15 TVDCSN-----QKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EEECCS-----SCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred EeEeCC-----CCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCE
Confidence 455554 33444554332 234555555555 44442 124555555555555554 333332 4455555555
Q ss_pred EecCCC
Q 044935 407 LDNEGT 412 (683)
Q Consensus 407 L~l~~~ 412 (683)
|++++|
T Consensus 86 L~Ls~N 91 (220)
T 2v70_A 86 ILLTSN 91 (220)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555555
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2e-12 Score=117.46 Aligned_cols=132 Identities=23% Similarity=0.199 Sum_probs=93.4
Q ss_pred CceEEEEEEecCCC--CcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccc-ccc
Q 044935 272 KKVLHLMLTIDEGT--SVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKE-IPT 348 (683)
Q Consensus 272 ~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-lp~ 348 (683)
..++.+.+.++.+. .++..+. ++++|++|++++|.+... ..+..+++|++|++++|. +.. +|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~----~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-----l~~~~~~ 89 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA----EFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENR-----IFGGLDM 89 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG----GGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCC-----CCSCCCH
T ss_pred ccCCEEECCCCCCChhhHHHHHH----hCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCc-----CchHHHH
Confidence 56777888877766 5554433 378888888888875422 447778888888888843 344 666
Q ss_pred cccCCCCCcEEeecCCCCccccc--hHHhcccCCcEEeccCccchhhccc----ccccccccceEecCCCcccccccc
Q 044935 349 NIKNLLHLKYLSLFGESEIKRLP--EVLCELYNLERLDVRFCVNLRELLQ----GIGKLRKLMYLDNEGTNSLRFLPV 420 (683)
Q Consensus 349 ~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p~ 420 (683)
.+..+++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|. ...+|.
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 66678888888888887 77765 567788888888888876 666665 66778888888887773 344443
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=3e-12 Score=132.00 Aligned_cols=121 Identities=20% Similarity=0.217 Sum_probs=77.1
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhc-CCCceeEEEecccCCcccCccccc-ccccCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFD-KLTCLRAITLETYGWDYNPIKEIP-TNIKNL 353 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l 353 (683)
.+...++.+..+|..+ .+.++.|++++|.+. ...+..|. ++++|++|+|++ +.+..++ ..+..+
T Consensus 22 ~l~c~~~~l~~iP~~~------~~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~-----N~i~~i~~~~~~~l 87 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL------PSYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSH-----NHLNFISSEAFVPV 87 (361)
T ss_dssp EEECCSSCCSSCCSSC------CTTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCS-----SCCCEECTTTTTTC
T ss_pred EEEeCCCCcCccCccC------CCCCCEEECCCCCCC---ccChhhhhhcccccCEEECCC-----CcCCccChhhccCC
Confidence 4455555666666554 344677777777653 33344455 677777777777 4445555 346777
Q ss_pred CCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhc-ccccccccccceEecCCC
Q 044935 354 LHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~ 412 (683)
++|++|+|++|. +..+|. .+..+++|++|+|++|. +..+ |..+..+++|++|++++|
T Consensus 88 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 88 PNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC
Confidence 777777777777 665553 46677777777777776 4443 456677777777777776
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=4.1e-12 Score=121.69 Aligned_cols=127 Identities=26% Similarity=0.370 Sum_probs=99.9
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~ 354 (683)
.+...++....+|..+ .++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+|. .+..++
T Consensus 23 ~v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~-----N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI------PTNAQILYLHDNQIT---KLEPGVFDSLINLKELYLGS-----NQLGALPVGVFDSLT 88 (229)
T ss_dssp EEECTTSCCSSCCSCC------CTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCT
T ss_pred EeEccCCCcCccCCCC------CCCCCEEEcCCCccC---ccCHHHhhCccCCcEEECCC-----CCCCCcChhhcccCC
Confidence 4555566667777655 578999999999854 44577788999999999998 55667764 468899
Q ss_pred CCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccc
Q 044935 355 HLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLP 419 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 419 (683)
+|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 89 ~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~ 151 (229)
T 3e6j_A 89 QLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIP 151 (229)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCC
T ss_pred CcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccC
Confidence 99999999998 7777654 6789999999999887 77899899999999999999884 33443
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1e-12 Score=147.60 Aligned_cols=146 Identities=21% Similarity=0.202 Sum_probs=84.4
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCcc-ccccchhhhcCCCceeEEEecccCCcccCcccccccc
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSW-SSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNI 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i 350 (683)
..++++.+..+.....+..... ...|+.+.+.+..... .....+..|..+..|++|+|++ +.+..+|..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~----~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~-----n~l~~l~~~~ 243 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQ----HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSN-----LQIFNISANI 243 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTT-----SCCSCCCGGG
T ss_pred CccceEEeeCCCCCcchhhHhh----cCccCcccccCccccccceecChhhhccCCCCcEEECCC-----CCCCCCChhh
Confidence 4577777777766655444433 3333333333221100 0124567788899999999999 6667888888
Q ss_pred cCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLR 429 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 429 (683)
..+++|++|+|++|. +..+|..+++|++|++|+|++|. +..+|..++.|++|++|++++| .+..+|..++.+++|+
T Consensus 244 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQ 319 (727)
T ss_dssp GGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCC
T ss_pred cCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCcc
Confidence 899999999999998 77999989999999999999988 7789999999999999999998 4567777766655444
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=5.6e-12 Score=119.90 Aligned_cols=122 Identities=23% Similarity=0.337 Sum_probs=90.2
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~ 354 (683)
.+...++.+..+|..+ .++++.|++++|.+. ...+..|..+++|++|+|++ +.+..+ |..+..++
T Consensus 15 ~v~c~~~~l~~iP~~l------~~~l~~L~l~~n~i~---~i~~~~~~~l~~L~~L~Ls~-----N~i~~~~~~~~~~l~ 80 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL------PETITEIRLEQNTIK---VIPPGAFSPYKKLRRIDLSN-----NQISELAPDAFQGLR 80 (220)
T ss_dssp EEECTTSCCSSCCSSC------CTTCCEEECCSSCCC---EECTTSSTTCTTCCEEECCS-----SCCCEECTTTTTTCS
T ss_pred EEEcCCCCcCcCCCcc------CcCCCEEECCCCcCC---CcCHhHhhCCCCCCEEECCC-----CcCCCcCHHHhhCCc
Confidence 3444555666666554 457888888888753 33455678888888888888 444555 67788888
Q ss_pred CCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhc-ccccccccccceEecCCCc
Q 044935 355 HLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 413 (683)
+|++|+|++|. +..+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++|.
T Consensus 81 ~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 81 SLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp SCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence 88888888888 7777765 5778888888888887 5544 5667888888888888884
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=3.1e-13 Score=151.82 Aligned_cols=186 Identities=17% Similarity=0.031 Sum_probs=96.5
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
-+.++.|.+.++.... .+..+.....|+.+.+.......+.+...|..+..+.+|+.|+|++|. +..+|..+.++
T Consensus 172 ~~~~~~l~L~~n~~~~----~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l 246 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE----ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGC
T ss_pred CCccceEEeeCCCCCc----chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCC
Confidence 4557778888776422 333333344445544444333335556667889999999999999999 88999989999
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHh
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEA 457 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~ 457 (683)
++|++|+|++|. +..+|..+++|++|++|++++|. +..+|..++.
T Consensus 247 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------------------------------- 291 (727)
T 4b8c_D 247 DFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS--------------------------------- 291 (727)
T ss_dssp CSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG---------------------------------
T ss_pred CCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcC---------------------------------
Confidence 999999999997 77999999999999999999995 3466665543
Q ss_pred HHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhcc-ccc
Q 044935 458 RRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLT-NLR 536 (683)
Q Consensus 458 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L~ 536 (683)
+++|+.|++++|.+. .+|..++.+++|+.|+|++|.+.. .+|..+..+. .+.
T Consensus 292 -------l~~L~~L~L~~N~l~------------------~lp~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~~~ 344 (727)
T 4b8c_D 292 -------CFQLKYFYFFDNMVT------------------TLPWEFGNLCNLQFLGVEGNPLEK--QFLKILTEKSVTGL 344 (727)
T ss_dssp -------GTTCSEEECCSSCCC------------------CCCSSTTSCTTCCCEECTTSCCCS--HHHHHHHHHHHHHH
T ss_pred -------CCCCCEEECCCCCCC------------------ccChhhhcCCCccEEeCCCCccCC--CChHHHhhcchhhh
Confidence 345556666665532 234456666677777777776655 3344444322 122
Q ss_pred eEeecCCCCCCCCC
Q 044935 537 DLYLSYCRNCEHLP 550 (683)
Q Consensus 537 ~L~l~~~~~~~~~~ 550 (683)
.|++++|.+...+|
T Consensus 345 ~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 345 IFYLRDNRPEIPLP 358 (727)
T ss_dssp HHHHHHCCCCCCCC
T ss_pred HHhhccCcccCcCc
Confidence 35555555544433
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=9.4e-12 Score=118.31 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=98.4
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~ 354 (683)
.+.+.++.+..+|..+ .+.++.|++++|.+.... .+..|.++++|++|+|++ +.+..++. .+..++
T Consensus 15 ~l~~s~n~l~~iP~~~------~~~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~~-----N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI------PQYTAELRLNNNEFTVLE--ATGIFKKLPQLRKINFSN-----NKITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSCCCEEC--CCCCGGGCTTCCEEECCS-----SCCCEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCC------CCCCCEEEcCCCcCCccC--chhhhccCCCCCEEECCC-----CcCCEECHHHhCCCC
Confidence 6677777777777665 445789999999864221 224578899999999998 55566654 688999
Q ss_pred CCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhc-ccccccccccceEecCCCcccccccccc
Q 044935 355 HLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGTNSLRFLPVGI 422 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~ 422 (683)
+|++|+|++|. +..+|. .+..+++|++|+|++|. +..+ |..+..+++|++|++++|......|..+
T Consensus 82 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 82 GVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp TCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 99999999998 666654 48889999999999988 5544 6778899999999999885433334333
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=1.1e-11 Score=112.41 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=89.7
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccc-cchHHhc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKR-LPEVLCE 376 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~i~~ 376 (683)
.++|+.|++++|.+. ...+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|. +.. +|..+.+
T Consensus 23 ~~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~-----l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVG-----LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSC-----CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHH
T ss_pred cccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCC-----CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhh
Confidence 588999999999863 12467768899999999999954 4555 678899999999999999 665 8887888
Q ss_pred ccCCcEEeccCccchhhcc--cccccccccceEecCCCc
Q 044935 377 LYNLERLDVRFCVNLRELL--QGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 413 (683)
+++|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9999999999997 77766 688999999999999984
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=4.3e-12 Score=112.66 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=65.8
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccc-cchHHhc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKR-LPEVLCE 376 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~i~~ 376 (683)
.++|+.|++++|.+.. ..+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|. +.. +|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~-----l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVG-----LTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECTTSC-----CCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHH
T ss_pred CccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECcCCC-----CCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhh
Confidence 4556677777766420 2345556666777777777633 3333 456667777777777776 444 6665666
Q ss_pred ccCCcEEeccCccchhhcc--cccccccccceEecCCCc
Q 044935 377 LYNLERLDVRFCVNLRELL--QGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 413 (683)
+++|++|++++|. +..+| ..++.+++|++|++++|.
T Consensus 87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 7777777777666 55443 566677777777777763
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=7.5e-12 Score=111.07 Aligned_cols=124 Identities=25% Similarity=0.246 Sum_probs=102.6
Q ss_pred CceEEEEEEecCCC--CcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccc-ccc
Q 044935 272 KKVLHLMLTIDEGT--SVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKE-IPT 348 (683)
Q Consensus 272 ~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-lp~ 348 (683)
..++++.+.++.+. .++..+. .+++|+.|++++|.+... ..+.++++|++|++++| .+.. +|.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n-----~i~~~~~~ 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD----EFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDN-----RVSGGLEV 82 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT----TCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSS-----CCCSCTHH
T ss_pred ccCeEEEccCCcCChhHHHHHHh----hcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCC-----cccchHHH
Confidence 67899999999877 5665444 499999999999986432 55889999999999994 4455 777
Q ss_pred cccCCCCCcEEeecCCCCccccc--hHHhcccCCcEEeccCccchhhccc----ccccccccceEecCC
Q 044935 349 NIKNLLHLKYLSLFGESEIKRLP--EVLCELYNLERLDVRFCVNLRELLQ----GIGKLRKLMYLDNEG 411 (683)
Q Consensus 349 ~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~ 411 (683)
.++.+++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 78889999999999998 87765 779999999999999997 777765 678899999998753
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=8.6e-12 Score=128.50 Aligned_cols=176 Identities=20% Similarity=0.171 Sum_probs=121.4
Q ss_pred cEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-cc-CCCCCcEEeecCCCCccccc-hHHhccc
Q 044935 302 RSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-IK-NLLHLKYLSLFGESEIKRLP-EVLCELY 378 (683)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i~-~l~~L~~L~L~~~~~~~~lp-~~i~~L~ 378 (683)
++++++++.+.. +|..+. ..+++|+|++ +.+..++.. +. .+++|++|+|++|. +..+| ..+.+++
T Consensus 21 ~~l~c~~~~l~~----iP~~~~--~~l~~L~Ls~-----N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSKQQLPN----VPQSLP--SYTALLDLSH-----NNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVP 88 (361)
T ss_dssp TEEECCSSCCSS----CCSSCC--TTCSEEECCS-----SCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred CEEEeCCCCcCc----cCccCC--CCCCEEECCC-----CCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCC
Confidence 578888887643 443332 4588999998 555666654 44 88999999999998 77766 4588999
Q ss_pred CCcEEeccCccchhhccc-ccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHh
Q 044935 379 NLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEA 457 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~ 457 (683)
+|++|+|++|. +..+|. .+..+++|++|++++|......|.
T Consensus 89 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------------------- 130 (361)
T 2xot_A 89 NLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRN------------------------------------- 130 (361)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTT-------------------------------------
T ss_pred CCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHH-------------------------------------
Confidence 99999999987 666665 578899999999998843222122
Q ss_pred HHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccc--c
Q 044935 458 RRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTN--L 535 (683)
Q Consensus 458 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~--L 535 (683)
.+..+++|+.|++++|.+...+.. ....+..+++|+.|+|++|.+.. +++..+..++. |
T Consensus 131 ---~~~~l~~L~~L~L~~N~l~~l~~~--------------~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~~~l 191 (361)
T 2xot_A 131 ---AFEDMAQLQKLYLSQNQISRFPVE--------------LIKDGNKLPKLMLLDLSSNKLKK--LPLTDLQKLPAWVK 191 (361)
T ss_dssp ---TTTTCTTCCEEECCSSCCCSCCGG--------------GTC----CTTCCEEECCSSCCCC--CCHHHHHHSCHHHH
T ss_pred ---HhCCcccCCEEECCCCcCCeeCHH--------------HhcCcccCCcCCEEECCCCCCCc--cCHHHhhhccHhhc
Confidence 233456777888888875443211 01112567888888988888877 65667777776 4
Q ss_pred ceEeecCCCCC
Q 044935 536 RDLYLSYCRNC 546 (683)
Q Consensus 536 ~~L~l~~~~~~ 546 (683)
+.|++++|+..
T Consensus 192 ~~l~l~~N~~~ 202 (361)
T 2xot_A 192 NGLYLHNNPLE 202 (361)
T ss_dssp TTEECCSSCEE
T ss_pred ceEEecCCCcc
Confidence 78888887643
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=3.2e-11 Score=115.48 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=109.9
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-c
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-I 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i 350 (683)
..++.+.+.++.+..++... +.++++|+.|++++|.+. ...+..|..+++|++|+|++ +.+..+|.. +
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~L~~N~l~---~i~~~~~~~l~~L~~L~Ls~-----N~l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV---FDSLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDLGT-----NQLTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-----SCCCCCCTTTT
T ss_pred CCCCEEEcCCCccCccCHHH---hhCccCCcEEECCCCCCC---CcChhhcccCCCcCEEECCC-----CcCCccChhHh
Confidence 68899999999988765433 345999999999999863 44456689999999999999 556677654 6
Q ss_pred cCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCcc
Q 044935 351 KNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNS 414 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 414 (683)
..+++|++|++++|. +..+|..+..+++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 109 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 109 DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 899999999999999 88999999999999999999997 777774 578899999999999854
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=2.2e-11 Score=111.45 Aligned_cols=126 Identities=19% Similarity=0.147 Sum_probs=77.6
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccc-
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNI- 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i- 350 (683)
..++.+.+.++.+..++. +.. ..++|++|++++|.+.. + ..|..+++|++|++++ +.+..+|..+
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~---~~~~L~~L~Ls~N~l~~----~-~~l~~l~~L~~L~Ls~-----N~l~~~~~~~~ 84 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGA---TLDQFDAIDFSDNEIRK----L-DGFPLLRRLKTLLVNN-----NRICRIGEGLD 84 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGG---GTTCCSEEECCSSCCCE----E-CCCCCCSSCCEEECCS-----SCCCEECSCHH
T ss_pred CCceEEEeeCCCCchhHH-hhh---cCCCCCEEECCCCCCCc----c-cccccCCCCCEEECCC-----CcccccCcchh
Confidence 456666676666665432 221 12367777777776532 2 2366667777777776 4445555443
Q ss_pred cCCCCCcEEeecCCCCccccch--HHhcccCCcEEeccCccchhhcccc----cccccccceEecCCCc
Q 044935 351 KNLLHLKYLSLFGESEIKRLPE--VLCELYNLERLDVRFCVNLRELLQG----IGKLRKLMYLDNEGTN 413 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~l~~~~ 413 (683)
+.+++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 667777777777776 666665 56667777777777666 5556653 5667777777766653
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3e-11 Score=110.51 Aligned_cols=105 Identities=27% Similarity=0.248 Sum_probs=86.9
Q ss_pred ccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHH-h
Q 044935 297 RMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVL-C 375 (683)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~ 375 (683)
++.+|+.|++++|.+.. +|......++|++|++++ +.+..+ ..++.+++|++|++++|. +..+|+.+ .
T Consensus 17 ~~~~L~~L~l~~n~l~~----i~~~~~~~~~L~~L~Ls~-----N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV----IENLGATLDQFDAIDFSD-----NEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSCCCS----CCCGGGGTTCCSEEECCS-----SCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred CcCCceEEEeeCCCCch----hHHhhhcCCCCCEEECCC-----CCCCcc-cccccCCCCCEEECCCCc-ccccCcchhh
Confidence 38899999999998742 344333344999999999 445555 578899999999999998 88888555 8
Q ss_pred cccCCcEEeccCccchhhccc--ccccccccceEecCCCc
Q 044935 376 ELYNLERLDVRFCVNLRELLQ--GIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~ 413 (683)
.+++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence 99999999999997 788887 78999999999999984
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.2e-10 Score=118.33 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=69.4
Q ss_pred CCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCC
Q 044935 505 PPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDT 583 (683)
Q Consensus 505 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 583 (683)
.+.+++.+.+.+.-... .+ ......+++|+.|++.+|......+. +.++++|+.|++.+. ++.++.....
T Consensus 200 ~~~~~~~l~~~~~l~~~-~~-~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~----- 270 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNA-DF-KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS----- 270 (329)
T ss_dssp CGGGCSEEEEEECCCHH-HH-HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----
T ss_pred CccccceEEEeeeecHH-HH-HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----
Confidence 34556666665542211 01 11112366777777776654332222 666777777777542 4444433211
Q ss_pred CCcccccccccc-cccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc-CCCCCCCCceEE
Q 044935 584 DGSSVIAFPKLK-RLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD-RLLQKTTLQRLE 652 (683)
Q Consensus 584 ~~~~~~~~~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~ 652 (683)
++++|+ .+.+.+ +++ .+.+..|..+++|+.|++++|. ++.++. .+.++++|+.++
T Consensus 271 ------~~~~L~~~l~l~~--~l~-----~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 271 ------NCGRLAGTLELPA--SVT-----AIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ------TCTTCCEEEEECT--TCC-----EECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred ------CChhccEEEEEcc--cce-----EEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 355566 664443 222 2345667788999999988776 455544 677788888875
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=5.6e-11 Score=110.32 Aligned_cols=125 Identities=19% Similarity=0.217 Sum_probs=95.1
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchh-hhcCCCceeEEEecccCCcccCcccc-cccccC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQ-LFDKLTCLRAITLETYGWDYNPIKEI-PTNIKN 352 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~ 352 (683)
+.+.+.++.+..+|..+ ..+++.|++++|.+. ...+. .|..+++|++|+|++ +.+..+ |..+..
T Consensus 11 ~~l~~s~~~l~~ip~~~------~~~l~~L~l~~n~i~---~~~~~~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI------PLHTTELLLNDNELG---RISSDGLFGRLPHLVKLELKR-----NQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCC------CTTCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECCS-----SCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCccCC------CCCCCEEECCCCcCC---ccCCccccccCCCCCEEECCC-----CCCCCcCHhHcCC
Confidence 45666777777777655 347899999999863 32332 478899999999998 444555 677889
Q ss_pred CCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcccccccccccceEecCCCcc
Q 044935 353 LLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNS 414 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 414 (683)
+++|++|+|++|. +..+| ..+.++++|++|+|++|......|..+..+++|++|++++|..
T Consensus 77 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 77 ASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 9999999999998 66655 4488899999999999874344467788899999999998854
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=108.40 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=94.3
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~ 354 (683)
.+...++.+..+|..+ .++|+.|++++|.+. .+|..|.++++|++|+|++ +.+..++ ..|..++
T Consensus 14 ~l~~~~~~l~~ip~~~------~~~l~~L~L~~n~i~----~ip~~~~~l~~L~~L~Ls~-----N~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI------PRDVTELYLDGNQFT----LVPKELSNYKHLTLIDLSN-----NRISTLSNQSFSNMT 78 (193)
T ss_dssp EEECTTSCCSSCCSCC------CTTCCEEECCSSCCC----SCCGGGGGCTTCCEEECCS-----SCCCCCCTTTTTTCT
T ss_pred EEEcCCCCCCcCCCCC------CCCCCEEECCCCcCc----hhHHHhhcccCCCEEECCC-----CcCCEeCHhHccCCC
Confidence 4556666677777654 467889999999863 3566788899999999998 5555665 4588899
Q ss_pred CCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcccc-cccccccceEecCCCcc
Q 044935 355 HLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEGTNS 414 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 414 (683)
+|++|+|++|. +..+| ..+..+++|++|+|++|. +..+|.. +..+++|++|++++|..
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 99999999998 66665 468889999999999887 7777764 67889999999988743
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=2e-10 Score=106.58 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=44.0
Q ss_pred eEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcc-cccccccccceE
Q 044935 329 RAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYL 407 (683)
Q Consensus 329 ~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L 407 (683)
+++++++ +.+..+|..+. .+|++|++++|. +..+|..+.++++|++|+|++|. +..++ ..+.++++|++|
T Consensus 13 ~~l~~~~-----~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSN-----KGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTT-----SCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCC-----CCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEE
Confidence 3555555 44455555432 456666666666 56666666666666666666665 44443 345666666666
Q ss_pred ecCCC
Q 044935 408 DNEGT 412 (683)
Q Consensus 408 ~l~~~ 412 (683)
++++|
T Consensus 84 ~Ls~N 88 (193)
T 2wfh_A 84 ILSYN 88 (193)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 66665
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=1.6e-10 Score=105.75 Aligned_cols=125 Identities=25% Similarity=0.317 Sum_probs=99.3
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-ccCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-IKNL 353 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i~~l 353 (683)
+.+....+.+..+|..+ .++|+.|++++|.+. ...+..|.++++|++|++++ +.+..+|.. ++.+
T Consensus 10 ~~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~-----n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI------PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSQ-----NQIQSLPDGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTC------CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCS-----SCCCCCCTTTTTTC
T ss_pred CEEEecCCCCccCCCCC------CCCCcEEEeCCCccc---EeCHHHhcCcccccEEECCC-----CcceEeChhHccCC
Confidence 35556667777777544 578999999999864 44556678999999999999 555667654 6899
Q ss_pred CCCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhccccc-ccccccceEecCCCccc
Q 044935 354 LHLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQGI-GKLRKLMYLDNEGTNSL 415 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~ 415 (683)
++|++|++++|. +..+|.. +.++++|++|++++|. +..+|..+ ..+++|++|++++|...
T Consensus 76 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 76 TKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999999998 7777754 6889999999999987 77777664 78999999999998543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=5.9e-12 Score=117.70 Aligned_cols=86 Identities=26% Similarity=0.331 Sum_probs=68.8
Q ss_pred chhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccc
Q 044935 318 LPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQG 397 (683)
Q Consensus 318 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 397 (683)
+|..+.++++|++|++++ +.+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .
T Consensus 40 l~~~~~~l~~L~~L~ls~-----n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~ 110 (198)
T 1ds9_A 40 MDATLSTLKACKHLALST-----NNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-G 110 (198)
T ss_dssp CHHHHHHTTTCSEEECSE-----EEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H
T ss_pred hhHHHhcCCCCCEEECCC-----CCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-c
Confidence 445788888888888888 5555677 78888888888888887 77888877788888888888886 66666 6
Q ss_pred cccccccceEecCCC
Q 044935 398 IGKLRKLMYLDNEGT 412 (683)
Q Consensus 398 i~~l~~L~~L~l~~~ 412 (683)
+..+++|++|++++|
T Consensus 111 ~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNN 125 (198)
T ss_dssp HHHHHHSSEEEESEE
T ss_pred cccCCCCCEEECCCC
Confidence 788888888888877
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=6.1e-12 Score=117.62 Aligned_cols=129 Identities=17% Similarity=0.091 Sum_probs=101.5
Q ss_pred eEEEEEEec--CCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 274 VLHLMLTID--EGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 274 ~~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
++...+.+. .+..++.. +.++++|++|++++|.+.. +| .+.++++|++|++++ +.+..+|..+.
T Consensus 25 l~~~~l~~~~~~l~~l~~~----~~~l~~L~~L~ls~n~l~~----l~-~~~~l~~L~~L~l~~-----n~l~~l~~~~~ 90 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDAT----LSTLKACKHLALSTNNIEK----IS-SLSGMENLRILSLGR-----NLIKKIENLDA 90 (198)
T ss_dssp CSEEECCBCCTTCCCCHHH----HHHTTTCSEEECSEEEESC----CC-CHHHHTTCCEEEEEE-----EEECSCSSHHH
T ss_pred hheeEeccccCcHhhhhHH----HhcCCCCCEEECCCCCCcc----cc-ccccCCCCCEEECCC-----CCcccccchhh
Confidence 344444433 34444444 4459999999999998643 55 688899999999999 66678898888
Q ss_pred CCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccc--ccccccccceEecCCCccccccc
Q 044935 352 NLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQ--GIGKLRKLMYLDNEGTNSLRFLP 419 (683)
Q Consensus 352 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p 419 (683)
.+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. .+..+++|++|++++|......|
T Consensus 91 ~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 91 VADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 89999999999998 88888 59999999999999987 666654 78899999999999996544433
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=6.5e-10 Score=103.05 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=84.7
Q ss_pred cEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc--ccCCCCCcEEeecCCCCcccc-chHHhccc
Q 044935 302 RSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN--IKNLLHLKYLSLFGESEIKRL-PEVLCELY 378 (683)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~--i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~ 378 (683)
++++++++.+.. +|..+. .+|++|++++ +.+..++.. ++.+++|++|++++|. +..+ |..+.+++
T Consensus 11 ~~l~~s~~~l~~----ip~~~~--~~l~~L~l~~-----n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGRGLKE----IPRDIP--LHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGAS 78 (192)
T ss_dssp TEEECTTSCCSS----CCSCCC--TTCSEEECCS-----CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCT
T ss_pred CEEEcCCCCcCc----CccCCC--CCCCEEECCC-----CcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcc
Confidence 688999988643 444332 3899999999 666777753 8899999999999999 6655 77899999
Q ss_pred CCcEEeccCccchhhcc-cccccccccceEecCCCccccccccccC
Q 044935 379 NLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLPVGIG 423 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~ 423 (683)
+|++|+|++|. +..++ ..+..+++|++|++++|......|..++
T Consensus 79 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 79 HIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp TCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 99999999998 66555 4578999999999999965444444433
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.2e-09 Score=99.19 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=44.2
Q ss_pred CceeEEEecccCCcccCcccc-cccccCCCCCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccc-ccccc
Q 044935 326 TCLRAITLETYGWDYNPIKEI-PTNIKNLLHLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQG-IGKLR 402 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 402 (683)
++|++|+|++ +.+..+ |..++.+++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|.. +..++
T Consensus 33 ~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNN-----NQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEeCC-----CCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhcccc
Confidence 4556666665 333344 3445556666666666665 5555543 3556666666666554 4455543 55566
Q ss_pred ccceEecCCC
Q 044935 403 KLMYLDNEGT 412 (683)
Q Consensus 403 ~L~~L~l~~~ 412 (683)
+|++|++++|
T Consensus 106 ~L~~L~L~~N 115 (174)
T 2r9u_A 106 SLTHIYLYNN 115 (174)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEEeCCC
Confidence 6666666655
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.5e-09 Score=98.69 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=90.6
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-ccCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-IKNL 353 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i~~l 353 (683)
..+.+.++.+..+|..+ .++|+.|++++|.+. ...|..|.++++|++|+|++ +.+..+|.. +..+
T Consensus 15 ~~l~~~~n~l~~iP~~~------~~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~-----N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI------PTDKQRLWLNNNQIT---KLEPGVFDHLVNLQQLYFNS-----NKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCSCC------CTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTC
T ss_pred cEEEeCCCCCCccCCCc------CCCCcEEEeCCCCcc---ccCHHHhcCCcCCCEEECCC-----CCCCccChhHhCCc
Confidence 45677778888888765 478999999999864 55577899999999999999 666778865 5899
Q ss_pred CCCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccccccc
Q 044935 354 LHLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQGIGKL 401 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l 401 (683)
++|++|+|++|. +..+|.. +..+++|++|+|++|. +...+..+..+
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC-cccccccHHHH
Confidence 999999999998 8888875 8999999999999997 55555544433
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=2.8e-09 Score=97.34 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=33.7
Q ss_pred cCcccccccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcccc-cccccccceEecCCC
Q 044935 341 NPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEGT 412 (683)
Q Consensus 341 ~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 412 (683)
+.+..+|..+ ..+|++|++++|. +..+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 17 KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC
Confidence 3344444332 2455555555555 444443 23555555555555554 4444432 355555555555554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=3.9e-09 Score=95.55 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=45.1
Q ss_pred CceeEEEecccCCcccCcccc-cccccCCCCCcEEeecCCCCccccchH-HhcccCCcEEeccCccchhhcccc-ccccc
Q 044935 326 TCLRAITLETYGWDYNPIKEI-PTNIKNLLHLKYLSLFGESEIKRLPEV-LCELYNLERLDVRFCVNLRELLQG-IGKLR 402 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 402 (683)
++|++|+|++ +.+..+ |..+..+++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|.. +..++
T Consensus 30 ~~l~~L~L~~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYD-----NQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLK 102 (170)
T ss_dssp TTCSEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEcCC-----CcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCC
Confidence 4556666665 333444 3445566666666666665 5555543 3566666666666655 4445443 55666
Q ss_pred ccceEecCCC
Q 044935 403 KLMYLDNEGT 412 (683)
Q Consensus 403 ~L~~L~l~~~ 412 (683)
+|++|++++|
T Consensus 103 ~L~~L~L~~N 112 (170)
T 3g39_A 103 SLTHIWLLNN 112 (170)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEeCCC
Confidence 6666666665
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=4.5e-09 Score=95.10 Aligned_cols=100 Identities=24% Similarity=0.323 Sum_probs=84.2
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-ccCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-IKNL 353 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i~~l 353 (683)
+.+.+.++.+..+|..+ .++|++|++++|.+. ...|..|.++++|++|+|++ +.+..+|.. +..+
T Consensus 12 ~~l~~s~n~l~~ip~~~------~~~l~~L~L~~N~i~---~~~~~~~~~l~~L~~L~Ls~-----N~l~~l~~~~f~~l 77 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI------PTTTQVLYLYDNQIT---KLEPGVFDRLTQLTRLDLDN-----NQLTVLPAGVFDKL 77 (170)
T ss_dssp TEEECTTSCCSSCCSCC------CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCS-----SCCCCCCTTTTTTC
T ss_pred CEEEeCCCCcCccCccC------CCCCcEEEcCCCcCC---ccChhhhcCcccCCEEECCC-----CCcCccChhhccCC
Confidence 46677778888888665 578999999999864 44577899999999999999 666777765 6899
Q ss_pred CCCcEEeecCCCCccccch-HHhcccCCcEEeccCcc
Q 044935 354 LHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCV 389 (683)
Q Consensus 354 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~ 389 (683)
++|++|+|++|. +..+|. .+.++++|++|+|++|.
T Consensus 78 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 78 TQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999999999998 888876 48899999999999987
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=1.3e-07 Score=98.16 Aligned_cols=260 Identities=11% Similarity=0.136 Sum_probs=144.1
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCccccc-hHHh
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRLP-EVLC 375 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~ 375 (683)
+..++.+.+..+ +..+-..+|.++ +|+.+.+.. .+..++. .|.+ .+|+.+.+.. . ++.++ ..+.
T Consensus 112 ~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~~------~i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~ 177 (401)
T 4fdw_A 112 LKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLNE------GLKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFY 177 (401)
T ss_dssp CSSCSEEECCTT----CCEECTTTTTTC-CCSEEECCT------TCCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTT
T ss_pred cCCccEEEECCc----cCEehHhhcccC-CccEEEeCC------CccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhh
Confidence 345555555443 113234456654 577777764 2445543 3444 3577777765 2 55555 3466
Q ss_pred cccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChh
Q 044935 376 ELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAG 455 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~ 455 (683)
++++|+.+++.+|. +..+|.......+|+.+.+..+ +..++..
T Consensus 178 ~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~---------------------------------- 220 (401)
T 4fdw_A 178 YCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQ---------------------------------- 220 (401)
T ss_dssp TCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTT----------------------------------
T ss_pred CcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhh----------------------------------
Confidence 77777777777665 6666655544567777766533 3333321
Q ss_pred HhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHH-hhhcCCCCCccEEEEeeecCCCCccCcchHhhccc
Q 044935 456 EARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERL-LEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTN 534 (683)
Q Consensus 456 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 534 (683)
.+.++.+|+.+.+..+- . .+ ...+.. .+|+.+.+. +.... ++...|..+++
T Consensus 221 -----aF~~~~~L~~l~l~~~l-~------------------~I~~~aF~~-~~L~~i~lp-~~i~~--I~~~aF~~c~~ 272 (401)
T 4fdw_A 221 -----AFLKTSQLKTIEIPENV-S------------------TIGQEAFRE-SGITTVKLP-NGVTN--IASRAFYYCPE 272 (401)
T ss_dssp -----TTTTCTTCCCEECCTTC-C------------------EECTTTTTT-CCCSEEEEE-TTCCE--ECTTTTTTCTT
T ss_pred -----HhhCCCCCCEEecCCCc-c------------------Ccccccccc-CCccEEEeC-CCccE--EChhHhhCCCC
Confidence 12233333333332210 0 00 112222 466777663 33333 44666777888
Q ss_pred cceEeecCCCCC----CCCCC--CCCCCCcceEEecCCCCeeEecccccCCCCCCCCccccccccccccccccccccccc
Q 044935 535 LRDLYLSYCRNC----EHLPP--LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEW 608 (683)
Q Consensus 535 L~~L~l~~~~~~----~~~~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 608 (683)
|+.+.+.++... ..++. +.++++|+.+.+.+ +++.++..... ++++|+.+.|.. +++
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-----------~c~~L~~l~lp~--~l~-- 335 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-----------GNRKVTQLTIPA--NVT-- 335 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-----------TCCSCCEEEECT--TCC--
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc-----------CCCCccEEEECc--ccc--
Confidence 888888776433 11222 77788888888753 35555443222 366777776543 222
Q ss_pred ccccccccccccCCcccEEeecCCCCCCcCCcCCCCC-CCCceEEEeCCc
Q 044935 609 DFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQK-TTLQRLEIYGCP 657 (683)
Q Consensus 609 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 657 (683)
...+..|..+ +|+.|.+.+|......+..+..+ .+++.|.+-.+.
T Consensus 336 ---~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 336 ---QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ---EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ---EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 2334567778 99999999986544334455556 478899997654
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=7.6e-09 Score=104.92 Aligned_cols=257 Identities=12% Similarity=0.053 Sum_probs=152.2
Q ss_pred CCceeEEEecccCCcccCcccccccccC-CCCCcEEeecCCCCcc--------------------ccc-hHHhc------
Q 044935 325 LTCLRAITLETYGWDYNPIKEIPTNIKN-LLHLKYLSLFGESEIK--------------------RLP-EVLCE------ 376 (683)
Q Consensus 325 l~~L~~L~L~~~~~~~~~~~~lp~~i~~-l~~L~~L~L~~~~~~~--------------------~lp-~~i~~------ 376 (683)
+.+++.|.+++. +....+.. +.. +++|++|||++|. +. .+| ..+.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~----l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRH----LRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHH----HHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHH----HHHhhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccccc
Confidence 567888998872 11111222 233 8899999999998 55 334 23567
Q ss_pred --ccCCcEEeccCccchhhccc-ccccccccceEecCCCccccccccccCCCCCCCCccccc-----cCccCCCeeEcC-
Q 044935 377 --LYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLK-----KLNLLRECWICG- 447 (683)
Q Consensus 377 --L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~-----~L~~L~~l~i~~- 447 (683)
+++|+.|+|.. . +..++. .+.++++|+.+++.++.....-+..+..+.++..++.-. ....+....+..
T Consensus 98 ~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 89999999987 4 677764 578899999999998854333333444433332221000 000000000000
Q ss_pred --------CCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecC
Q 044935 448 --------RGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRG 519 (683)
Q Consensus 448 --------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 519 (683)
..............-....++..+.+.+.- ...........+++|+.+++.+|.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-----------------~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-----------------DNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-----------------CHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeee-----------------cHHHHHHHHHhcCCCeEEECCCCCc
Confidence 001111222222222234455566665542 0111111112378999999999888
Q ss_pred CCCccCcchHhhccccceEeecCCCCCCCCCC--CCCCCCcc-eEEecCCCCeeEecccccCCCCCCCCccccccccccc
Q 044935 520 RRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP--LGKLPSLE-DLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKR 596 (683)
Q Consensus 520 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 596 (683)
.. +++..|..+++|+.|++.++ ...++. +.++++|+ .+.+.+ .++.++..... ++++|+.
T Consensus 239 ~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~-----------~c~~L~~ 301 (329)
T 3sb4_A 239 TT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM-----------GCDNLRY 301 (329)
T ss_dssp CE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT-----------TCTTEEE
T ss_pred ce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh-----------CCccCCE
Confidence 77 77888999999999999987 444444 88999999 999976 56666543222 4788888
Q ss_pred ccccccccccccccccccccccccCCcccEEee
Q 044935 597 LAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSI 629 (683)
Q Consensus 597 L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l 629 (683)
+.+. .+.+....+..|..+++|+.|..
T Consensus 302 l~l~------~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLAT------GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEC------SSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeC------CCccCccchhhhcCCcchhhhcc
Confidence 8543 33344445567778899988763
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=104.48 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=53.3
Q ss_pred cCCccEEEEeCCCCcccc-ccchhhhc-CCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccc-hHH
Q 044935 298 MRRLRSLSVEGGEYSWSS-KVLPQLFD-KLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLP-EVL 374 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~-~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i 374 (683)
++.|+.|++++|.++... ..+...+. ..++|+.|+|++|.+++..+..+ ...+.+|++|+|++|. ++..+ ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~-l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNS-LGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSC-CCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCC-CCHHHHHHH
Confidence 456667777776643211 11222222 22567777776654432222222 1234456666666665 43221 112
Q ss_pred -----hcccCCcEEeccCccchh-----hcccccccccccceEecCCC
Q 044935 375 -----CELYNLERLDVRFCVNLR-----ELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 375 -----~~L~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~l~~~ 412 (683)
...++|++|+|++|. +. .++..+..+++|++|++++|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 124556666666665 32 23344455566666666665
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=1.9e-06 Score=89.31 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=76.8
Q ss_pred hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccchHH
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLPEVL 374 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i 374 (683)
.++ +|+.+.+..+ + ..+-..+|.++ +|+.+.+.+ .+..++ ..|.+|.+|+.+++++|. +..+|...
T Consensus 133 ~~~-~L~~i~l~~~-i---~~I~~~aF~~~-~L~~i~lp~------~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~a 199 (401)
T 4fdw_A 133 RNS-QIAKVVLNEG-L---KSIGDMAFFNS-TVQEIVFPS------TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPAST 199 (401)
T ss_dssp TTC-CCSEEECCTT-C---CEECTTTTTTC-CCCEEECCT------TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTT
T ss_pred ccC-CccEEEeCCC-c---cEECHHhcCCC-CceEEEeCC------CccEehHHHhhCcccCCeeecCCCc-ceEechhh
Confidence 344 6999998766 2 24345567774 699999974 345565 568899999999999988 88888765
Q ss_pred hcccCCcEEeccCccchhhcc-cccccccccceEecCCC
Q 044935 375 CELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 375 ~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~ 412 (683)
-...+|+.+.+..+ +..++ ..+.++++|+.+++..+
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence 55789999999853 66665 45688999999998764
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=2.5e-08 Score=102.39 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=90.9
Q ss_pred CCceeEEEecccCCcccCcccccccccC-CCCCcEEeecCCCCccc--cchHHhcccCCcEEeccCccchhhcccc----
Q 044935 325 LTCLRAITLETYGWDYNPIKEIPTNIKN-LLHLKYLSLFGESEIKR--LPEVLCELYNLERLDVRFCVNLRELLQG---- 397 (683)
Q Consensus 325 l~~L~~L~L~~~~~~~~~~~~lp~~i~~-l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~---- 397 (683)
++.|+.|+|++|.++......+...+.. ..+|++|+|++|. +.. +......+++|++|+|++|.....-...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3567777777765543333334443332 2577777777776 432 2222334567777777777622211122
Q ss_pred c-ccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEee
Q 044935 398 I-GKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFC 476 (683)
Q Consensus 398 i-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 476 (683)
+ ...++|++|++++|.. .... .......+...++|+.|++++|
T Consensus 150 L~~~~~~L~~L~Ls~n~l-~~~~-----------------------------------~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPL-TAAG-----------------------------------VAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHSTTCCCCEEECCSSCC-HHHH-----------------------------------HHHHHHHHHTCSSCCEEECTTS
T ss_pred HHhcCCccceeeCCCCCC-ChHH-----------------------------------HHHHHHHHhcCCCcCEEeCCCC
Confidence 2 2346677777777732 1100 0111223344566777777766
Q ss_pred cCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCc---cCcchHhhccccceEeecCCCCC
Q 044935 477 HSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNV---VPINWIMSLTNLRDLYLSYCRNC 546 (683)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~ 546 (683)
.+. ......+...+..+++|++|+|++|.+.... + ...+...++|++|+|++|.+.
T Consensus 194 ~l~-------------~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l-~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 194 GLG-------------DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL-ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCH-------------HHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH-HHHHHHCSSCCEEECTTSSCC
T ss_pred CCC-------------cHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH-HHHHHhCCCCCEEeccCCCCC
Confidence 531 1223445556666667777777777664411 1 222334577777777777644
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=2.5e-07 Score=94.48 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=43.5
Q ss_pred chhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcc
Q 044935 318 LPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELL 395 (683)
Q Consensus 318 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp 395 (683)
+|. +..+.+|+.|+|+++ +.+..+| ..|+.|++|++|+|++|. +..+| ..+.+|++|++|+|++|. +..+|
T Consensus 24 ip~-l~~~~~L~~L~l~~~----n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~ 96 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLS 96 (347)
T ss_dssp TTT-SCSCSCCSEEECCSC----SSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCC
T ss_pred cCC-CCCCCCeeEEEccCC----CCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeC
Confidence 444 555555555555530 2333444 345555555555555555 44333 334555555555555554 44555
Q ss_pred cccccccccceEecCCC
Q 044935 396 QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 396 ~~i~~l~~L~~L~l~~~ 412 (683)
..+.....|+.|++.+|
T Consensus 97 ~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGN 113 (347)
T ss_dssp STTTCSCCCCEEECCSS
T ss_pred HHHcccCCceEEEeeCC
Confidence 44322222555555555
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=8.5e-07 Score=90.16 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=40.9
Q ss_pred hhccCCccEEEEeCCCCc-----cc-cccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCcc
Q 044935 295 VKRMRRLRSLSVEGGEYS-----WS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIK 368 (683)
Q Consensus 295 ~~~~~~L~~L~l~~~~~~-----~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 368 (683)
..++++|+.|.+.+.... +. ...+...+..+++|+.|.|+++. . ..++. +. +++|+.|++..|. +.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~----~-l~l~~-~~-~~~L~~L~L~~~~-l~ 206 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN----N-LSIGK-KP-RPNLKSLEIISGG-LP 206 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB----T-CBCCS-CB-CTTCSEEEEECSB-CC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC----C-ceecc-cc-CCCCcEEEEecCC-CC
Confidence 445778888887654321 11 11244445566666666666531 1 12232 22 5566666666554 22
Q ss_pred -ccchHHh--cccCCcEEecc
Q 044935 369 -RLPEVLC--ELYNLERLDVR 386 (683)
Q Consensus 369 -~lp~~i~--~L~~L~~L~L~ 386 (683)
.....+. .+++|++|+|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEE
T ss_pred hHHHHHHHHccCCCCcEEEEe
Confidence 1112222 45555555553
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=9.7e-07 Score=90.06 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=77.9
Q ss_pred EEEec-CCCCcccccchhhhccCCccEEEEeC-CCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCC
Q 044935 278 MLTID-EGTSVPISIWNNVKRMRRLRSLSVEG-GEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLL 354 (683)
Q Consensus 278 ~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~ 354 (683)
...+. .+..+|. +.. +++|+.|++++ |.+. ...+..|.++++|+.|+|++ |.+..+| ..|..|+
T Consensus 14 ~~~~~n~l~~ip~-l~~----~~~L~~L~l~~~n~l~---~~~~~~~~~l~~L~~L~l~~-----N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPG----AENLTELYIENQQHLQ---HLELRDLRGLGELRNLTIVK-----SGLRFVAPDAFHFTP 80 (347)
T ss_dssp ECCSSCCCTTTTT-SCS----CSCCSEEECCSCSSCC---EECGGGSCSCCCCSEEECCS-----SCCCEECTTGGGSCS
T ss_pred EcCCCCCCCccCC-CCC----CCCeeEEEccCCCCCC---CcChhHhccccCCCEEECCC-----CccceeCHHHhcCCc
Confidence 44455 6666776 544 89999999996 8753 44567799999999999999 5556665 4689999
Q ss_pred CCcEEeecCCCCccccchHHhcccCCcEEeccCcc
Q 044935 355 HLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 389 (683)
+|++|+|++|. +..+|..+.....|++|+|.+|.
T Consensus 81 ~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 81 RLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCC
Confidence 99999999999 88888765554459999999987
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=3.3e-07 Score=83.92 Aligned_cols=125 Identities=14% Similarity=0.017 Sum_probs=92.3
Q ss_pred ccccchhhhccCCccEEEEeCC-CCccc-cccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCC
Q 044935 288 PISIWNNVKRMRRLRSLSVEGG-EYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGES 365 (683)
Q Consensus 288 ~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 365 (683)
...+...+...+.|+.|++++| .+... ...+...+...+.|++|+|++|.+.+.....+...+...++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3344555667899999999998 75321 122455677788999999999887766666677777788899999999998
Q ss_pred Cccc-----cchHHhcccCCcEEec--cCccchh----hcccccccccccceEecCCCc
Q 044935 366 EIKR-----LPEVLCELYNLERLDV--RFCVNLR----ELLQGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 366 ~~~~-----lp~~i~~L~~L~~L~L--~~~~~l~----~lp~~i~~l~~L~~L~l~~~~ 413 (683)
++. +...+...+.|++|+| ++|..-. .+...+...++|++|++++|.
T Consensus 105 -i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 654 5566777889999999 7776222 244555667899999999884
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=5.5e-07 Score=91.53 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=55.0
Q ss_pred hhhhcCCCceeEEEecccCCcccCc-----ccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhh
Q 044935 319 PQLFDKLTCLRAITLETYGWDYNPI-----KEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRE 393 (683)
Q Consensus 319 ~~~~~~l~~L~~L~L~~~~~~~~~~-----~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ 393 (683)
.....++++|+.|.+.+.......+ ..++..+..+++|+.|+|++|..+ .+|. + .+++|++|+|..|.....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 3345567889999887632211111 234455667788888888887422 4554 3 378888888887763222
Q ss_pred ccccc--ccccccceEecCC
Q 044935 394 LLQGI--GKLRKLMYLDNEG 411 (683)
Q Consensus 394 lp~~i--~~l~~L~~L~l~~ 411 (683)
....+ ..+++|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHHHccCCCCcEEEEec
Confidence 22333 2678888888753
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=1.6e-06 Score=77.20 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=50.0
Q ss_pred CceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccc-hHHhcc----cCCcEEeccCccchhhc-ccccc
Q 044935 326 TCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLP-EVLCEL----YNLERLDVRFCVNLREL-LQGIG 399 (683)
Q Consensus 326 ~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L----~~L~~L~L~~~~~l~~l-p~~i~ 399 (683)
..|+.|++++|.+++..+.. +..+++|++|+|++|..++.-. ..++.+ ++|++|+|++|..++.- -..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 35677777776555444433 3456777777777776554321 224443 35777777777655431 23445
Q ss_pred cccccceEecCCCccc
Q 044935 400 KLRKLMYLDNEGTNSL 415 (683)
Q Consensus 400 ~l~~L~~L~l~~~~~~ 415 (683)
++++|++|++++|..+
T Consensus 137 ~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GCTTCCEEEEESCTTC
T ss_pred cCCCCCEEECCCCCCC
Confidence 6677777777777543
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=1.2e-05 Score=83.40 Aligned_cols=284 Identities=15% Similarity=0.138 Sum_probs=148.8
Q ss_pred hhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccc-
Q 044935 294 NVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLP- 371 (683)
Q Consensus 294 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp- 371 (683)
.|.+|.+|+.+.+..+ +..+-..+|.++.+|+.+++.+ .++.++ ..+.++..|+.+.+..+ +..++
T Consensus 66 AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp~------~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~ 133 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIPD------SVKMIGRCTFSGCYALKSILLPLM--LKSIGV 133 (394)
T ss_dssp TTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCCT------TCCEECTTTTTTCTTCCCCCCCTT--CCEECT
T ss_pred HhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeCC------CceEccchhhcccccchhhcccCc--eeeecc
Confidence 3455788888887643 2233345678888888888864 233443 33555666665554432 11111
Q ss_pred ----------------------hHHhcccCCcEEeccCccchhhcc-cccccccccceEecCCCccccccc-cccCCCCC
Q 044935 372 ----------------------EVLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGTNSLRFLP-VGIGELIS 427 (683)
Q Consensus 372 ----------------------~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~ 427 (683)
..+.++.+|+.+.+.++ +..++ ..+.++.+|+.+.+..+ +..++ ..+..+..
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 22455566666666532 23333 23455566666655443 22222 12222222
Q ss_pred CCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCC
Q 044935 428 LRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPP 507 (683)
Q Consensus 428 L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (683)
|+.+.--.... .+ ........+|+.+.+..... . + -...+..+.
T Consensus 210 L~~i~~~~~~~-----~i-------------~~~~~~~~~l~~i~ip~~~~-~-----i------------~~~~f~~~~ 253 (394)
T 4fs7_A 210 LENMEFPNSLY-----YL-------------GDFALSKTGVKNIIIPDSFT-E-----L------------GKSVFYGCT 253 (394)
T ss_dssp CCBCCCCTTCC-----EE-------------CTTTTTTCCCCEEEECTTCC-E-----E------------CSSTTTTCS
T ss_pred cceeecCCCce-----Ee-------------ehhhcccCCCceEEECCCce-e-----c------------ccccccccc
Confidence 22211000000 00 01122345667666632210 0 0 012445677
Q ss_pred CccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcc
Q 044935 508 NLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSS 587 (683)
Q Consensus 508 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 587 (683)
.|+.+.+..+.. . +....+..+..++.+........ -..+..+.+|+.+.+.. .++.++.....
T Consensus 254 ~l~~~~~~~~~~-~--i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF~--------- 317 (394)
T 4fs7_A 254 DLESISIQNNKL-R--IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAFE--------- 317 (394)
T ss_dssp SCCEEEECCTTC-E--ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTTT---------
T ss_pred cceeEEcCCCcc-e--eeccccccccccceeccCceeec--ccccccccccccccccc--ccceechhhhc---------
Confidence 888888765432 2 33566777888888777654211 11266778888888843 35455443221
Q ss_pred cccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCc-CCCCCCCCceEEEeCC
Q 044935 588 VIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPD-RLLQKTTLQRLEIYGC 656 (683)
Q Consensus 588 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 656 (683)
++.+|+.+.|.. +++ ......|..+.+|+.+.+..+ ++.++. .+.++++|+.+++..+
T Consensus 318 --~c~~L~~i~lp~--~v~-----~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 --SCTSLVSIDLPY--LVE-----EIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp --TCTTCCEECCCT--TCC-----EECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred --CCCCCCEEEeCC--ccc-----EEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 366777776532 122 223456677888888888665 455544 6677888998888654
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.14 E-value=4e-05 Score=79.45 Aligned_cols=264 Identities=11% Similarity=0.075 Sum_probs=141.2
Q ss_pred chhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcc
Q 044935 318 LPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELL 395 (683)
Q Consensus 318 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp 395 (683)
-..+|.++.+|+.+.+.. .++.++ .+|.++.+|+.+++..+ +..++ ..+.++.+|+.+.+..+ +..+.
T Consensus 63 g~~AF~~c~~L~~i~lp~------~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~ 132 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS------TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIG 132 (394)
T ss_dssp CTTTTTTCTTEEEEECCT------TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred HHHHhhCCCCceEEEeCC------CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeec
Confidence 345689999999999974 356665 46889999999999764 56665 34777888888776532 22221
Q ss_pred -----------------------cccccccccceEecCCCcccccccc-ccCCCCCCCCccccccCccCCCeeEcCCCCC
Q 044935 396 -----------------------QGIGKLRKLMYLDNEGTNSLRFLPV-GIGELISLRNLGSLKKLNLLRECWICGRGGV 451 (683)
Q Consensus 396 -----------------------~~i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~ 451 (683)
..+.++++|+.+.+..+ ...++. .+..+.+|+.+.--..+.
T Consensus 133 ~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~------------- 197 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLK------------- 197 (394)
T ss_dssp TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCC-------------
T ss_pred ceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCce-------------
Confidence 12334445555554332 112221 122222222111000000
Q ss_pred CChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhh
Q 044935 452 SDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMS 531 (683)
Q Consensus 452 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 531 (683)
......+.++..|+.+.+..+.. .+........+|+.+.+.... .. +....+..
T Consensus 198 ----~I~~~~F~~~~~L~~i~~~~~~~-------------------~i~~~~~~~~~l~~i~ip~~~-~~--i~~~~f~~ 251 (394)
T 4fs7_A 198 ----IIRDYCFAECILLENMEFPNSLY-------------------YLGDFALSKTGVKNIIIPDSF-TE--LGKSVFYG 251 (394)
T ss_dssp ----EECTTTTTTCTTCCBCCCCTTCC-------------------EECTTTTTTCCCCEEEECTTC-CE--ECSSTTTT
T ss_pred ----EeCchhhccccccceeecCCCce-------------------EeehhhcccCCCceEEECCCc-ee--cccccccc
Confidence 00012233444555444322210 011122334567777764321 11 33455667
Q ss_pred ccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccc
Q 044935 532 LTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFR 611 (683)
Q Consensus 532 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 611 (683)
+.+|+.+.+..+...-....+..++.++.+...... ++.... ..+.+|+.+.+.. +++
T Consensus 252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F-----------~~~~~L~~i~l~~--~i~----- 309 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTF-----------YGCSSLTEVKLLD--SVK----- 309 (394)
T ss_dssp CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTTT-----------TTCTTCCEEEECT--TCC-----
T ss_pred cccceeEEcCCCcceeeccccccccccceeccCcee----eccccc-----------ccccccccccccc--ccc-----
Confidence 788888888765322222236677777777664321 221111 1356777775543 222
Q ss_pred cccccccccCCcccEEeecCCCCCCcCC-cCCCCCCCCceEEEeCC
Q 044935 612 TAIKGEIIIMPRLSSLSIDDCPKLKALP-DRLLQKTTLQRLEIYGC 656 (683)
Q Consensus 612 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c 656 (683)
.+....|..+.+|+.+.|.++ ++.++ ..+.++.+|+.+.+..+
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred eechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc
Confidence 233456778899999999654 55664 46778899999988543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=1e-06 Score=84.68 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=51.5
Q ss_pred cCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhccc--CCcEEeccCccchhhcc-----
Q 044935 323 DKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELY--NLERLDVRFCVNLRELL----- 395 (683)
Q Consensus 323 ~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~L~~~~~l~~lp----- 395 (683)
.++++|+.|+|++|.+ ..+..+|..++.+++|++|+|++|. +..+.. +..+. +|++|+|++|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l--~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRL--YRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCC--CCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCC--CCCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCcCccccCcchhH
Confidence 4567777777777554 2233455556677777777777777 665533 55555 77777777776333333
Q ss_pred --cccccccccceEe
Q 044935 396 --QGIGKLRKLMYLD 408 (683)
Q Consensus 396 --~~i~~l~~L~~L~ 408 (683)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 1245677777775
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=9.7e-07 Score=78.53 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=38.8
Q ss_pred cccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcC-CcCCCCCCCCceEEEeCCcchHH
Q 044935 590 AFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKAL-PDRLLQKTTLQRLEIYGCPILEE 661 (683)
Q Consensus 590 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~ 661 (683)
.+++|++|++++|..+++..+...... -...++|+.|+|++|+.+++- -..+.++++|+.|++++|+.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 355555555555555554433111100 001246888888888765541 11344578888888888876664
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=1.8e-06 Score=78.94 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=76.7
Q ss_pred ccchhhhcCCCceeEEEeccc-CCcccCcccccccccCCCCCcEEeecCCCCccc-----cchHHhcccCCcEEeccCcc
Q 044935 316 KVLPQLFDKLTCLRAITLETY-GWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKR-----LPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 316 ~~~~~~~~~l~~L~~L~L~~~-~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~L~~~~ 389 (683)
..+...+...+.|+.|+|++| .+.+.....+...+...++|++|+|++|. +.. +...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 345666788999999999998 87766677788888889999999999998 653 45567777899999999997
Q ss_pred chh----hcccccccccccceEec--CCCc
Q 044935 390 NLR----ELLQGIGKLRKLMYLDN--EGTN 413 (683)
Q Consensus 390 ~l~----~lp~~i~~l~~L~~L~l--~~~~ 413 (683)
.-. .+...+...++|++|++ ++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 322 24566777889999999 6663
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=0.00019 Score=74.26 Aligned_cols=108 Identities=11% Similarity=0.124 Sum_probs=65.5
Q ss_pred hhccC-CccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccc-
Q 044935 295 VKRMR-RLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLP- 371 (683)
Q Consensus 295 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp- 371 (683)
|.+++ .|+.+.+..+ +..+-..+|.++.+|+.+.+..+.- ..++.++ ..|..+.+|+.+.+..+ +..++
T Consensus 59 F~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p--~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~ 130 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKP--SCVKKIGRQAFMFCSELTDIPILDS--VTEIDS 130 (394)
T ss_dssp TTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCC--CCCCEECTTTTTTCTTCCBCGGGTT--CSEECT
T ss_pred ccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCC--CeeeEechhhchhcccceeeccCCc--cceehh
Confidence 33453 4788887654 2233456688888888888876310 2244554 34667777777776543 45554
Q ss_pred hHHhcccCCcEEeccCccchhhcc-cccccccccceEecCCC
Q 044935 372 EVLCELYNLERLDVRFCVNLRELL-QGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 372 ~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~ 412 (683)
..+..+.+|+.+.+... +..++ ..+..+.+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 34667788888887643 33333 34566777777776543
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=7.3e-05 Score=71.82 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=63.1
Q ss_pred hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCC--CCcEEeecCCCCccccc--
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLL--HLKYLSLFGESEIKRLP-- 371 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~--~L~~L~L~~~~~~~~lp-- 371 (683)
.++++|++|++++|.+..+.. +|..+..+++|+.|+|++|.+ ..+ ..+..+. +|++|+|++|..-..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls~N~i-----~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSGNEL-----KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECTTSCC-----CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECCCCcc-----CCc-hhhhhcccCCcceEEccCCcCccccCcc
Confidence 458999999999999765433 566778999999999999555 433 2234444 99999999999444455
Q ss_pred -----hHHhcccCCcEEecc
Q 044935 372 -----EVLCELYNLERLDVR 386 (683)
Q Consensus 372 -----~~i~~L~~L~~L~L~ 386 (683)
..+..+++|+.||=.
T Consensus 240 ~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHHCTTCCEESSC
T ss_pred hhHHHHHHHHCcccCeECCc
Confidence 247889999999743
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.36 E-value=0.002 Score=66.47 Aligned_cols=125 Identities=11% Similarity=0.106 Sum_probs=81.1
Q ss_pred eEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccC
Q 044935 274 VLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKN 352 (683)
Q Consensus 274 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~ 352 (683)
+..+.+... ...+... .|.+|.+|+.+.+..+.-..+..+-..+|.++..|+.+.+.. .+..++ ..+..
T Consensus 66 L~sI~iP~s-vt~Ig~~---AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~------~~~~I~~~aF~~ 135 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSN---AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD------SVTEIDSEAFHH 135 (394)
T ss_dssp CCEEEECTT-CCEECTT---TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT------TCSEECTTTTTT
T ss_pred CEEEEECCC-eeEEhHH---HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC------ccceehhhhhhh
Confidence 566666432 3434433 455699999999987642223343456788888888877754 344554 45788
Q ss_pred CCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 353 LLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
+.+|+.+.+... +..++ ..+..+.+|+.+.+..+ +..+........+|+.+.+...
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT
T ss_pred hcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCc
Confidence 899999999754 45554 34778899999988753 4555544333457777777543
No 163
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.24 E-value=0.0015 Score=67.83 Aligned_cols=205 Identities=8% Similarity=-0.036 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCCCCC-CchhHHHHHHHHHHHcC--CceEEEEEEcCCCCCc------cChHhHHHhhhCC---C--CCcE
Q 044935 8 EARAIIEALKPGSTK-DLVEFQSLMQHIQECVE--GEKFLLVLDDLWNKDY------YKWEPFYNCLKNG---L--HGSK 73 (683)
Q Consensus 8 l~~~il~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlvLDdv~~~~~------~~~~~l~~~~~~~---~--~gs~ 73 (683)
+.++|+++++ .... ...+.+++.+.+.+.+. +++++||+||+|.-.. ..+..+...+... + .+..
T Consensus 103 ~~~~l~~~l~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 103 ILSLIVRQTG-YPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHT-CCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 7788888887 3322 22345566666766665 7899999999975321 2233333333322 2 3445
Q ss_pred EEEEecCchhhh-----------ccCC---------cchHHHHHHh---hcCCCCCcchHHHHHHHHHHHcC------Cc
Q 044935 74 ILITTRNETTAH-----------NMGS---------TNIIQLMFSF---LGKSMEGRENLEKIGREIVGKCK------GL 124 (683)
Q Consensus 74 iivTTr~~~v~~-----------~~~~---------~~~~~ll~~~---~~~~~~~~~~~~~~~~~i~~~c~------gl 124 (683)
||+||++..+.. .+.. ....+++... .+...... .+.+..+++.|+ |.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCc
Confidence 888887654321 1111 1112223111 11111111 356778889999 99
Q ss_pred hHHHHHHHhh-h--c---CC--CCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhhhhccCC--CCeeeC
Q 044935 125 PLAVKTIGSL-L--R---SK--NNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFSYCAVFP--KDREIW 194 (683)
Q Consensus 125 Plal~~~~~~-L--~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~~~ 194 (683)
|..+..+... . + +. -+.+.+..++..... ...+.-++..|++..+.++..+|.+. .+..+.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 9765554432 1 1 11 133444444332100 22344467889999999998888653 223444
Q ss_pred hHHHHHHHH--H---hC-------cHHHHHHHHHhcCCceeec
Q 044935 195 KYELIKLWM--A---QG-------YLNEYFNILASSSFFQEFN 225 (683)
Q Consensus 195 ~~~li~~w~--~---~g-------~~~~~l~~L~~~~ll~~~~ 225 (683)
..++...+. + .| -+..+++.|.+.+++....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 555444331 1 12 1347899999999997654
No 164
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.03 E-value=0.0027 Score=64.26 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHcCC-ceEEEEEEcCCCCCc------cC-hHhHHHhhhCCCCCcEEEEEecCchhhhcc----C----
Q 044935 25 VEFQSLMQHIQECVEG-EKFLLVLDDLWNKDY------YK-WEPFYNCLKNGLHGSKILITTRNETTAHNM----G---- 88 (683)
Q Consensus 25 ~~~~~~~~~l~~~l~~-kr~LlvLDdv~~~~~------~~-~~~l~~~~~~~~~gs~iivTTr~~~v~~~~----~---- 88 (683)
.+.+++.+.+.+..+. ++++||+||++..+. .+ +..+.... +...+.++|+|++.......+ .
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~ 189 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLPNLKIILTGSEVGLLHDFLKITDYESP 189 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCTTEEEEEEESSHHHHHHHHCTTCTTST
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCc
Confidence 3456666677666643 399999999965432 12 23333222 223578999998875432111 0
Q ss_pred ---C-cchH-----------HHH-HHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHH-HHHhh
Q 044935 89 ---S-TNII-----------QLM-FSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKN-ILESE 151 (683)
Q Consensus 89 ---~-~~~~-----------~ll-~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~-~l~~~ 151 (683)
. ...+ +++ ..+........ .+.+.++...|+|.|.++..++..+....+...+.. ..+..
T Consensus 190 l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
T 2qen_A 190 LYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA 266 (350)
T ss_dssp TTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH
Confidence 0 0111 112 22211111111 346788999999999999999876532222222221 11110
Q ss_pred hhccccccccchHHH-HHhhcCCChhhHHHhhhhccCCCCeeeChHHHHHHHHH------hCcHHHHHHHHHhcCCceee
Q 044935 152 IWEHEVVKKGLLAPL-LLSYNELPSKVKHYFSYCAVFPKDREIWKYELIKLWMA------QGYLNEYFNILASSSFFQEF 224 (683)
Q Consensus 152 ~~~~~~~~~~~~~~l-~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~------~g~~~~~l~~L~~~~ll~~~ 224 (683)
...+...+ .+.+ + ++..+..+..+|. . . ....++...... ..-+..+++.|.+.+++...
T Consensus 267 -------~~~~~~~l~~l~~-~-~~~~~~~l~~la~-g-~--~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 267 -------KGLIMGELEELRR-R-SPRYVDILRAIAL-G-Y--NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp -------HHHHHHHHHHHHH-H-CHHHHHHHHHHHT-T-C--CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -------HHHHHHHHHHHHh-C-ChhHHHHHHHHHh-C-C--CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 00011111 1112 2 6788889988887 2 1 344555443311 11234789999999999765
Q ss_pred cCCCCCCeeEEehhHHHHHHH
Q 044935 225 NADGDGEVYMCKMHDLVHDLA 245 (683)
Q Consensus 225 ~~~~~g~~~~~~mhdl~~~~~ 245 (683)
.+. +.-.|.++++..
T Consensus 334 ----~~~--y~~~~p~~~~~~ 348 (350)
T 2qen_A 334 ----DNT--YKIADPVVATVL 348 (350)
T ss_dssp ----TTE--EEESSHHHHHHH
T ss_pred ----CCE--EEEecHHHHHHH
Confidence 122 223466777653
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.98 E-value=0.0042 Score=63.00 Aligned_cols=196 Identities=12% Similarity=0.136 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHcCCceEEEEEEcCCCCCc---cChHhHHHhhhCCCCCcEEEEEecCchhhhc----------cC-C-c
Q 044935 26 EFQSLMQHIQECVEGEKFLLVLDDLWNKDY---YKWEPFYNCLKNGLHGSKILITTRNETTAHN----------MG-S-T 90 (683)
Q Consensus 26 ~~~~~~~~l~~~l~~kr~LlvLDdv~~~~~---~~~~~l~~~~~~~~~gs~iivTTr~~~v~~~----------~~-~-~ 90 (683)
..+++.+.+.+.-+ ++++||+||++..+. .+|..+...+.+...+.++|+|+|....... .. . .
T Consensus 123 ~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~ 201 (357)
T 2fna_A 123 SFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF 201 (357)
T ss_dssp CHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCcc
Confidence 45556666655433 599999999965321 2343333444333357899999997653211 10 0 0
Q ss_pred chH-----------HHHH-HhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhhhhccccc
Q 044935 91 NII-----------QLMF-SFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESEIWEHEVV 158 (683)
Q Consensus 91 ~~~-----------~ll~-~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~ 158 (683)
..+ +++. .+....... ... .++++.|+|.|+++..++..+....+...|...+-.. .
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~------~ 270 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDF-KDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY------A 270 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCC-CCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH------H
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCC-CcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH------H
Confidence 111 1222 221111111 111 7899999999999999988765332333342211100 0
Q ss_pred cccchHHHH-Hhhc--CCChhhHHHhhhhccCCCCeeeChHHHHHHHH-HhC------cHHHHHHHHHhcCCceeecCCC
Q 044935 159 KKGLLAPLL-LSYN--ELPSKVKHYFSYCAVFPKDREIWKYELIKLWM-AQG------YLNEYFNILASSSFFQEFNADG 228 (683)
Q Consensus 159 ~~~~~~~l~-~sy~--~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~-~~g------~~~~~l~~L~~~~ll~~~~~~~ 228 (683)
...+...+. +.++ .|++..+..+..+|+ . . ....+..... ..| -+..+++.|.+.+++....
T Consensus 271 ~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g--~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~--- 342 (357)
T 2fna_A 271 KKLILKEFENFLHGREIARKRYLNIMRTLSK-C--G--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG--- 342 (357)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C--B--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS---
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C--C--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC---
Confidence 000111111 2221 678889999999998 2 2 4444443211 123 2447899999999997642
Q ss_pred CCCeeEEehhHHHHHH
Q 044935 229 DGEVYMCKMHDLVHDL 244 (683)
Q Consensus 229 ~g~~~~~~mhdl~~~~ 244 (683)
+.. .-.|.++++.
T Consensus 343 -~~y--~f~~~~~~~~ 355 (357)
T 2fna_A 343 -EKY--CPSEPLISLA 355 (357)
T ss_dssp -SCE--EESSHHHHHH
T ss_pred -CEE--EecCHHHHHh
Confidence 221 2357777764
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.019 Score=58.68 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=16.3
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEec
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLE 334 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 334 (683)
..+|+.+.+... +..+-..+|.++.+|+.+.|.
T Consensus 45 ~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 45 RDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GGGCSEEEECTT----EEEECTTTTTTCTTCCEEEEC
T ss_pred ccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeC
Confidence 445555555433 112223445666666666664
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.52 E-value=0.034 Score=56.78 Aligned_cols=80 Identities=8% Similarity=0.149 Sum_probs=54.4
Q ss_pred hcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcccccc
Q 044935 322 FDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQGIG 399 (683)
Q Consensus 322 ~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~ 399 (683)
+....+|+.+.+.. .++.++ .+|.++.+|+.+.|..+ ++.++. .+.++ +|+.+.+..+ +..++....
T Consensus 42 ~~~~~~i~~v~ip~------~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF 110 (379)
T 4h09_A 42 YKDRDRISEVRVNS------GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVF 110 (379)
T ss_dssp GGGGGGCSEEEECT------TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTTT
T ss_pred cccccCCEEEEeCC------CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEecccee
Confidence 55667889988863 567776 45889999999999754 666664 35555 6777766532 555555443
Q ss_pred cccccceEecCCC
Q 044935 400 KLRKLMYLDNEGT 412 (683)
Q Consensus 400 ~l~~L~~L~l~~~ 412 (683)
...+|+.+.+..+
T Consensus 111 ~~~~L~~i~lp~~ 123 (379)
T 4h09_A 111 QGTDLDDFEFPGA 123 (379)
T ss_dssp TTCCCSEEECCTT
T ss_pred ccCCcccccCCCc
Confidence 3457888887654
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.90 E-value=0.0049 Score=55.76 Aligned_cols=122 Identities=10% Similarity=0.035 Sum_probs=79.1
Q ss_pred ccchhhhccCCccEEEEeCC-CCccc-cccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCc
Q 044935 290 SIWNNVKRMRRLRSLSVEGG-EYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEI 367 (683)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 367 (683)
.+.....+-+.|+.|+++++ .+... ...+-..+..-..|+.|+|++|.+.+.....+.+.+..-+.|++|+|++|. +
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 33344445678888988875 54211 122445566777899999998877766666777777777889999998888 5
Q ss_pred cc-----cchHHhcccCCcEEeccCccc--hh-----hcccccccccccceEecCCC
Q 044935 368 KR-----LPEVLCELYNLERLDVRFCVN--LR-----ELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 368 ~~-----lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~l~~L~~L~l~~~ 412 (683)
+. +-+.+..-+.|++|+|+++.. +. .+...+..=+.|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 53 333455556688888876531 21 23334444567888887665
No 169
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.26 Score=50.13 Aligned_cols=205 Identities=10% Similarity=-0.023 Sum_probs=105.5
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHcC--CceEEEEEEcCCCCCcc--ChHhHHHhhhCC-----CCCcEEEEEe
Q 044935 8 EARAIIEALKPGSTKDLVEFQSLMQHIQECVE--GEKFLLVLDDLWNKDYY--KWEPFYNCLKNG-----LHGSKILITT 78 (683)
Q Consensus 8 l~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvLDdv~~~~~~--~~~~l~~~~~~~-----~~gs~iivTT 78 (683)
+..+++++++........+..+..+.+.+.+. +++.+|||||++.-... ..+.+...+... ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 67778888873222233345666667777763 56899999999643221 123333333221 4466888888
Q ss_pred cCchh--------hhccCC----------cchHHHHHHh---hcCCCCCcchHHHHHHHHHHHcC---CchH-HHHHHHh
Q 044935 79 RNETT--------AHNMGS----------TNIIQLMFSF---LGKSMEGRENLEKIGREIVGKCK---GLPL-AVKTIGS 133 (683)
Q Consensus 79 r~~~v--------~~~~~~----------~~~~~ll~~~---~~~~~~~~~~~~~~~~~i~~~c~---glPl-al~~~~~ 133 (683)
+.... ...+.. ....+++... ........+ +..+.+++.++ |.|- |+.++..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 76532 122211 0112223222 111111122 23455667776 9994 3333322
Q ss_pred hh--c---C--CCCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhhhhcc-CCCCeeeChHHHHHHHHH-
Q 044935 134 LL--R---S--KNNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFSYCAV-FPKDREIWKYELIKLWMA- 204 (683)
Q Consensus 134 ~L--~---~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~a~-fp~~~~~~~~~li~~w~~- 204 (683)
+. + + .-+.+.+..++.... ...+.-++..|++..+..++.++. +.....+...++.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 22 1 1 125666666665421 123455678899888877776663 322223444543333211
Q ss_pred ---h-------CcHHHHHHHHHhcCCceeec
Q 044935 205 ---Q-------GYLNEYFNILASSSFFQEFN 225 (683)
Q Consensus 205 ---~-------g~~~~~l~~L~~~~ll~~~~ 225 (683)
. ..+..+++.|...+++....
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 1 12338899999999998754
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.33 E-value=0.25 Score=50.36 Aligned_cols=230 Identities=13% Similarity=0.054 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHcC--CceEEEEEEcCCCCCccChHhHHHhhhCCC----CCcEEEEEecCc
Q 044935 8 EARAIIEALKPGSTKDLVEFQSLMQHIQECVE--GEKFLLVLDDLWNKDYYKWEPFYNCLKNGL----HGSKILITTRNE 81 (683)
Q Consensus 8 l~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~----~gs~iivTTr~~ 81 (683)
+.++++.+++...........++.+.+.+.+. +++.+|||||++..+......+...+.... .+..||++|++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 67777777762212222345555566665553 668999999997655445555555543222 477888888876
Q ss_pred hhhhcc--------CC----------cchHHHHHHhh---cCCCCCcchHHHHHHHHHHHc---------CCchHHHHHH
Q 044935 82 TTAHNM--------GS----------TNIIQLMFSFL---GKSMEGRENLEKIGREIVGKC---------KGLPLAVKTI 131 (683)
Q Consensus 82 ~v~~~~--------~~----------~~~~~ll~~~~---~~~~~~~~~~~~~~~~i~~~c---------~glPlal~~~ 131 (683)
.....+ .. ....+++.... ...... -.+....+++.+ +|.|-.+..+
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 432221 11 01112231111 111111 134566788888 6876544433
Q ss_pred Hhh-hc-----CC--CCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhhhhccCC---CCeeeChHHHHH
Q 044935 132 GSL-LR-----SK--NNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFSYCAVFP---KDREIWKYELIK 200 (683)
Q Consensus 132 ~~~-L~-----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp---~~~~~~~~~li~ 200 (683)
... .. +. -+.+....+..... .. .+.-.+..|++..+..+..++.+. .+..+...++..
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~~------~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEVL------FG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHS------CC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHh------hh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 222 11 11 13333333333211 11 112234567777777777666543 221455556555
Q ss_pred HHHHh-----------CcHHHHHHHHHhcCCceeecC----CCCCCeeEEe----hhHHHHHHHHHHhh
Q 044935 201 LWMAQ-----------GYLNEYFNILASSSFFQEFNA----DGDGEVYMCK----MHDLVHDLAQFIWR 250 (683)
Q Consensus 201 ~w~~~-----------g~~~~~l~~L~~~~ll~~~~~----~~~g~~~~~~----mhdl~~~~~~~~~~ 250 (683)
.+... +-+..++++|..++++..... ...|+...++ .|+++..+...+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 317 SYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 44331 223488999999999987654 1223333332 45676666554433
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.15 E-value=0.27 Score=50.03 Aligned_cols=203 Identities=10% Similarity=0.029 Sum_probs=106.1
Q ss_pred HHHHHHHHcCCCCC--CCchhHHHHHHHHHHHcCCceEEEEEEcCCCCCccChHhH-HHhhhCCCCCcEEEEEecCchhh
Q 044935 8 EARAIIEALKPGST--KDLVEFQSLMQHIQECVEGEKFLLVLDDLWNKDYYKWEPF-YNCLKNGLHGSKILITTRNETTA 84 (683)
Q Consensus 8 l~~~il~~~~~~~~--~~~~~~~~~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l-~~~~~~~~~gs~iivTTr~~~v~ 84 (683)
+..++++++. +.. ....+..+..+.+.+.+..++.+|||||++.-....+... ...+.....+.+||+||+.....
T Consensus 99 ~~~~l~~~l~-~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 99 VLSSLAGKLT-GFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHH-CSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 6667777773 221 1223345667778888887777999999964332222222 33333322788999999875321
Q ss_pred --------hccCC---------cchHHHHHHh---hcCCCCCcchHHHHHHHHHHHcC---CchH-HHHHHHhhh--c--
Q 044935 85 --------HNMGS---------TNIIQLMFSF---LGKSMEGRENLEKIGREIVGKCK---GLPL-AVKTIGSLL--R-- 136 (683)
Q Consensus 85 --------~~~~~---------~~~~~ll~~~---~~~~~~~~~~~~~~~~~i~~~c~---glPl-al~~~~~~L--~-- 136 (683)
..++. ....+++... +......++ +..+.+++.|+ |.|. |+..+..+. +
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 11111 1122223222 111112222 33456777776 8776 443333322 2
Q ss_pred -CCCCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhhhhccCCCC-eeeChHHHHHHHHHhC-------c
Q 044935 137 -SKNNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFSYCAVFPKD-REIWKYELIKLWMAQG-------Y 207 (683)
Q Consensus 137 -~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp~~-~~~~~~~li~~w~~~g-------~ 207 (683)
..-+.+.+..+++... ...+.-++..|++..|..+..++. ... ..+. .......-..| .
T Consensus 255 ~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp SSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTTCCCCCHHH
T ss_pred CCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcCCCCCCHHH
Confidence 1236777777766421 133556778898887777766665 211 1110 11111111111 1
Q ss_pred HHHHHHHHHhcCCceeecC
Q 044935 208 LNEYFNILASSSFFQEFNA 226 (683)
Q Consensus 208 ~~~~l~~L~~~~ll~~~~~ 226 (683)
+..++..|...+++.....
T Consensus 323 ~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 323 FSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 2378899999999987543
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.73 E-value=0.025 Score=51.06 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=69.4
Q ss_pred ccchhhhcCCCceeEEEeccc-CCcccCcccccccccCCCCCcEEeecCCCCcc-----ccchHHhcccCCcEEeccCcc
Q 044935 316 KVLPQLFDKLTCLRAITLETY-GWDYNPIKEIPTNIKNLLHLKYLSLFGESEIK-----RLPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 316 ~~~~~~~~~l~~L~~L~L~~~-~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~~~ 389 (683)
..+...+.+-+.|+.|+|+++ .+.+.....+.+.+..-..|+.|+|++|. ++ .+.+.+..-+.|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 334555667788999999985 66655566677778888899999999998 65 344556677889999999987
Q ss_pred chh----hcccccccccccceEecCCC
Q 044935 390 NLR----ELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 390 ~l~----~lp~~i~~l~~L~~L~l~~~ 412 (683)
.-. .+-..+..=+.|++|+++++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 322 23334444567899988765
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.45 E-value=0.095 Score=49.28 Aligned_cols=94 Identities=10% Similarity=0.119 Sum_probs=58.8
Q ss_pred CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhhh-----cc--------CCcchHHHHHHhhc-CCC
Q 044935 39 EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTAH-----NM--------GSTNIIQLMFSFLG-KSM 104 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~-----~~--------~~~~~~~ll~~~~~-~~~ 104 (683)
.+++.+||+||++.-+...++.+...+.....+.++|+||+...... .+ ...+..+++..+.. ...
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 35789999999976555677888888877777899999997653211 11 00112222322221 111
Q ss_pred CCcchHHHHHHHHHHHcCCchHHHHHHHhhh
Q 044935 105 EGRENLEKIGREIVGKCKGLPLAVKTIGSLL 135 (683)
Q Consensus 105 ~~~~~~~~~~~~i~~~c~glPlal~~~~~~L 135 (683)
..+ .+..+.+++.|+|.|..+..+....
T Consensus 204 ~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 3456789999999999888776544
No 174
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.64 E-value=0.087 Score=44.19 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=31.1
Q ss_pred EEEecccCCcccCcc--cccccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCcc
Q 044935 330 AITLETYGWDYNPIK--EIPTNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCV 389 (683)
Q Consensus 330 ~L~L~~~~~~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~ 389 (683)
+++.++ ..++ .+|..+. .+|++|+|++|. +..+|. .+..+++|++|+|++|.
T Consensus 12 ~v~Cs~-----~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-----RGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-----SCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-----CCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 455555 4444 5554332 356777777776 666664 35567777777777664
No 175
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.75 E-value=1.1 Score=45.26 Aligned_cols=205 Identities=10% Similarity=-0.025 Sum_probs=99.7
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHcC--CceEEEEEEcCCCCC----ccChHhHHHhhhC-CCCCcEEEEEecC
Q 044935 8 EARAIIEALKPGSTKDLVEFQSLMQHIQECVE--GEKFLLVLDDLWNKD----YYKWEPFYNCLKN-GLHGSKILITTRN 80 (683)
Q Consensus 8 l~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvLDdv~~~~----~~~~~~l~~~~~~-~~~gs~iivTTr~ 80 (683)
+..+++++++........+..+..+.+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||++
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 44455555541111122234555556665554 458999999995422 2223344443332 2345677888887
Q ss_pred chhhhccCC------------------cchHHHHHHh---hcCCCCCcchHHHHHHHHHHHcC---CchHHHHH-HHhhh
Q 044935 81 ETTAHNMGS------------------TNIIQLMFSF---LGKSMEGRENLEKIGREIVGKCK---GLPLAVKT-IGSLL 135 (683)
Q Consensus 81 ~~v~~~~~~------------------~~~~~ll~~~---~~~~~~~~~~~~~~~~~i~~~c~---glPlal~~-~~~~L 135 (683)
......+.. ....+++... ........ .+..+.+++.++ |.|..+.. +..+.
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 643322211 0111223221 11111122 344555666666 98884433 32221
Q ss_pred --c---C--CCCHHHHHHHHHhhhhccccccccchHHHHHhhcCCChhhHHHhhhhccCCC-C-eeeChHHHHHHHH---
Q 044935 136 --R---S--KNNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNELPSKVKHYFSYCAVFPK-D-REIWKYELIKLWM--- 203 (683)
Q Consensus 136 --~---~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~a~fp~-~-~~~~~~~li~~w~--- 203 (683)
+ + .-+.+.++.++.... ...+.-++..+++..+..+..++...+ + ..+...++.....
T Consensus 250 ~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~ 319 (386)
T 2qby_A 250 EIAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNIC 319 (386)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHH
Confidence 1 1 124556665554321 123555677888888877777764322 1 1233333322211
Q ss_pred -Hh-------CcHHHHHHHHHhcCCceeec
Q 044935 204 -AQ-------GYLNEYFNILASSSFFQEFN 225 (683)
Q Consensus 204 -~~-------g~~~~~l~~L~~~~ll~~~~ 225 (683)
.. .-+..+++.|...+++....
T Consensus 320 ~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 320 KKLGVEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 11 22448899999999997653
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.49 E-value=0.14 Score=42.87 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=42.1
Q ss_pred cEEeecCCCCcc--ccchHHhcccCCcEEeccCccchhhcccc-cccccccceEecCCCc
Q 044935 357 KYLSLFGESEIK--RLPEVLCELYNLERLDVRFCVNLRELLQG-IGKLRKLMYLDNEGTN 413 (683)
Q Consensus 357 ~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 413 (683)
..++.++.. ++ .+|..+ -.+|++|+|++|. +..+|.. +..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 367778877 77 888643 2479999999998 8888865 5789999999999884
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.05 E-value=1.5 Score=40.00 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=33.3
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++.+||+||++......++.+...+.....+.++|+||+..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 678999999997665556677777777777788999999765
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.38 E-value=2.6 Score=41.30 Aligned_cols=43 Identities=7% Similarity=0.098 Sum_probs=33.0
Q ss_pred CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 39 EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.+++.+||+||++.-....++.+...+.....++++|+||+..
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 4568999999997655555667777777767788999998764
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=66.97 E-value=12 Score=36.47 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=54.4
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchh-----hhccCC--------cchHHHHHHhhcC-CCC
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETT-----AHNMGS--------TNIIQLMFSFLGK-SME 105 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v-----~~~~~~--------~~~~~ll~~~~~~-~~~ 105 (683)
+++.+||+||++.-....++.+...+.+...+.++|+||....- ...+.. ....+.+...... ...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 67889999999766555677788777777778899999876431 111110 0111223222111 111
Q ss_pred CcchHHHHHHHHHHHcCCchHHHHHHHhhh
Q 044935 106 GRENLEKIGREIVGKCKGLPLAVKTIGSLL 135 (683)
Q Consensus 106 ~~~~~~~~~~~i~~~c~glPlal~~~~~~L 135 (683)
.+ .+....+++.++|.|..+..+....
T Consensus 189 ~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 189 LT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 11 3445678888888888665554433
No 180
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=62.16 E-value=10 Score=33.78 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCce-EEEEEEcCCC---CCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 28 QSLMQHIQECVEGEK-FLLVLDDLWN---KDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 28 ~~~~~~l~~~l~~kr-~LlvLDdv~~---~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
...-+.+++.+.+.+ =|||||++-. -.....+.+...+.....+.-||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 445555667776544 4899999921 12346677888888888889999999976
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=57.43 E-value=22 Score=35.30 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 39 EGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 39 ~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.+++.+||+||+..-+...++.+...+.+...+..+|++|...
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 3567899999996655556777877777767778888888654
No 182
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=48.05 E-value=1.6e+02 Score=28.11 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=49.5
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCC------------------CCcEEEEEecCch-----hhhccCC-------
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGL------------------HGSKILITTRNET-----TAHNMGS------- 89 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~------------------~gs~iivTTr~~~-----v~~~~~~------- 89 (683)
.+..+|+|||+..-.....+.+...+.+.. .+.++|.||.... +...+..
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 356689999996554444555655554431 2456777776432 2222211
Q ss_pred --cchHHHHHHhhcC-CCCCcchHHHHHHHHHHHcCCchHHHHHHHhhh
Q 044935 90 --TNIIQLMFSFLGK-SMEGRENLEKIGREIVGKCKGLPLAVKTIGSLL 135 (683)
Q Consensus 90 --~~~~~ll~~~~~~-~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L 135 (683)
....+++..+... ....+ .+....+++.|+|.|-.+..+...+
T Consensus 169 ~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 0112223322221 11111 3456778899999998887665544
No 183
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=41.91 E-value=55 Score=31.30 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=29.9
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++.+||+||+..-.....+.+...+.....+.++|+||...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 668899999996544444555666666656778888888654
No 184
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=24.96 E-value=34 Score=29.62 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=23.1
Q ss_pred ceEEEEEEcCCCCCccChH--hHHHhhhCC-CCCcEEEEEecCc
Q 044935 41 EKFLLVLDDLWNKDYYKWE--PFYNCLKNG-LHGSKILITTRNE 81 (683)
Q Consensus 41 kr~LlvLDdv~~~~~~~~~--~l~~~~~~~-~~gs~iivTTr~~ 81 (683)
+.-++||||++......|. .+...+... ..|..||+||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3568999999733222333 233333222 2577899988643
No 185
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.15 E-value=1.9e+02 Score=27.93 Aligned_cols=42 Identities=5% Similarity=-0.043 Sum_probs=29.7
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
.++-+|++|++..-.......+...+.......++|++|...
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 456699999996554445666777777666778888888543
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=23.06 E-value=67 Score=31.30 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=31.3
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++-++|+|++..-+....+.+...+.+...+..+|++|.+.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 567889999996554445667777777777788888888764
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.62 E-value=71 Score=31.22 Aligned_cols=41 Identities=0% Similarity=-0.004 Sum_probs=30.3
Q ss_pred ceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 41 EKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 41 kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
++-++|+|++..-+....+.+...+.....+.++|++|.+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 56699999997655455666777776666788899988764
No 188
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=20.66 E-value=61 Score=17.45 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=13.8
Q ss_pred CCchHHHHHHHhhhcCC
Q 044935 122 KGLPLAVKTIGSLLRSK 138 (683)
Q Consensus 122 ~glPlal~~~~~~L~~~ 138 (683)
.-+|+|+.++|+.+..+
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 35899999999988654
Done!