Query 044935
Match_columns 683
No_of_seqs 378 out of 3479
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 14:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044935.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044935hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a5yb3 c.37.1.20 (B:109-385) 99.8 2.4E-21 1.8E-25 188.5 10.5 146 25-183 119-276 (277)
2 d1ogqa_ c.10.2.8 (A:) Polygala 99.8 5.1E-20 3.7E-24 184.3 9.5 123 299-426 50-173 (313)
3 d2omza2 c.10.2.1 (A:33-416) In 99.8 4E-18 2.9E-22 175.8 22.1 79 463-565 216-294 (384)
4 d1ogqa_ c.10.2.8 (A:) Polygala 99.8 4.8E-19 3.5E-23 177.1 13.5 245 272-565 50-300 (313)
5 d2omza2 c.10.2.1 (A:33-416) In 99.7 1.5E-17 1.1E-21 171.5 20.0 303 298-657 43-362 (384)
6 d1xkua_ c.10.2.7 (A:) Decorin 99.7 1.2E-16 9.1E-21 158.6 18.4 262 301-657 12-283 (305)
7 d1xkua_ c.10.2.7 (A:) Decorin 99.7 2.7E-16 2E-20 156.2 19.9 242 327-657 11-253 (305)
8 d1p9ag_ c.10.2.7 (G:) von Will 99.6 7.1E-16 5.2E-20 149.5 14.5 195 298-566 9-205 (266)
9 d1ozna_ c.10.2.7 (A:) Reticulo 99.6 1.6E-15 1.1E-19 148.7 16.4 110 504-657 126-236 (284)
10 d1p9ag_ c.10.2.7 (G:) von Will 99.6 1.6E-15 1.2E-19 146.9 13.3 195 275-545 13-207 (266)
11 d1ozna_ c.10.2.7 (A:) Reticulo 99.6 7.1E-15 5.1E-19 144.0 13.7 214 279-566 18-235 (284)
12 d1jl5a_ c.10.2.6 (A:) Leucine 99.5 1.4E-13 1E-17 139.3 19.6 54 590-657 282-335 (353)
13 d1h6ua2 c.10.2.1 (A:36-262) In 99.5 3.5E-14 2.6E-18 133.8 14.0 187 324-564 39-225 (227)
14 d1h6ta2 c.10.2.1 (A:31-240) In 99.5 4.2E-14 3.1E-18 131.3 11.7 55 505-564 154-208 (210)
15 d2astb2 c.10.1.3 (B:2136-2419) 99.5 1.9E-14 1.4E-18 140.3 9.6 165 350-569 42-213 (284)
16 d2omxa2 c.10.2.1 (A:37-235) In 99.5 6E-14 4.4E-18 129.0 12.0 54 503-561 146-199 (199)
17 d1h6ua2 c.10.2.1 (A:36-262) In 99.5 2.3E-13 1.7E-17 128.1 14.3 191 349-655 36-226 (227)
18 d1jl5a_ c.10.2.6 (A:) Leucine 99.5 5.5E-13 4E-17 134.8 17.8 289 273-654 39-352 (353)
19 d1h6ta2 c.10.2.1 (A:31-240) In 99.4 3.8E-13 2.8E-17 124.6 13.1 165 298-542 45-209 (210)
20 d2omxa2 c.10.2.1 (A:37-235) In 99.4 4.9E-13 3.5E-17 122.8 13.5 161 298-538 39-199 (199)
21 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.4 1.5E-12 1.1E-16 124.0 14.3 81 327-412 30-113 (242)
22 d2astb2 c.10.1.3 (B:2136-2419) 99.3 4.8E-13 3.5E-17 130.3 7.4 188 324-566 44-235 (284)
23 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.3 1.4E-14 1E-18 152.5 -4.2 114 273-389 3-123 (460)
24 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.2 1.2E-11 8.9E-16 117.4 11.6 123 276-412 12-138 (242)
25 d1dcea3 c.10.2.2 (A:444-567) R 99.2 1.3E-11 9.2E-16 103.0 9.7 99 302-413 1-101 (124)
26 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.2 2.9E-13 2.1E-17 142.2 -1.6 110 300-413 3-123 (460)
27 d1a9na_ c.10.2.4 (A:) Spliceso 99.2 1.1E-11 8.3E-16 108.7 7.7 105 297-413 16-123 (162)
28 d1a9na_ c.10.2.4 (A:) Spliceso 99.1 3.8E-11 2.8E-15 105.3 8.6 123 272-410 18-147 (162)
29 d1dcea3 c.10.2.2 (A:444-567) R 99.1 9.5E-11 6.9E-15 97.5 9.8 116 275-407 1-122 (124)
30 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.0 2.2E-10 1.6E-14 104.0 8.9 123 276-413 12-137 (192)
31 d1m9la_ c.10.3.1 (A:) Outer ar 99.0 1.8E-11 1.3E-15 111.6 0.6 67 343-412 37-103 (198)
32 d2ca6a1 c.10.1.2 (A:2-345) Rna 98.9 4.6E-11 3.4E-15 119.8 -0.0 40 296-335 28-68 (344)
33 d1m9la_ c.10.3.1 (A:) Outer ar 98.9 2.9E-11 2.1E-15 110.1 -2.3 108 294-414 43-152 (198)
34 d1w8aa_ c.10.2.7 (A:) Slit {Fr 98.9 1.1E-09 7.8E-14 99.3 7.4 128 272-412 29-159 (192)
35 d2ca6a1 c.10.1.2 (A:2-345) Rna 98.8 1.1E-09 8.3E-14 109.4 5.3 141 272-413 31-197 (344)
36 d2ifga3 c.10.2.7 (A:36-191) Hi 98.7 2.5E-08 1.8E-12 86.3 9.1 103 301-413 10-114 (156)
37 d2ifga3 c.10.2.7 (A:36-191) Hi 98.6 6.7E-08 4.9E-12 83.5 8.5 101 277-389 13-114 (156)
38 d1koha1 c.10.2.3 (A:201-362) m 97.7 3.7E-06 2.7E-10 72.8 1.8 88 318-408 57-152 (162)
39 d1koha1 c.10.2.3 (A:201-362) m 97.3 3.4E-05 2.5E-09 66.4 1.9 82 296-384 62-152 (162)
40 d1pgva_ c.10.1.1 (A:) Tropomod 97.3 6.7E-05 4.9E-09 64.9 3.7 115 297-412 13-141 (167)
41 d1pgva_ c.10.1.1 (A:) Tropomod 96.9 0.00028 2E-08 60.8 4.1 117 272-389 15-142 (167)
42 d1io0a_ c.10.1.1 (A:) Tropomod 96.8 0.00038 2.8E-08 59.9 4.1 116 296-412 14-142 (166)
43 d1io0a_ c.10.1.1 (A:) Tropomod 96.1 0.0022 1.6E-07 54.9 4.3 96 316-412 7-112 (166)
44 d1a5ta2 c.37.1.20 (A:1-207) de 61.2 9.9 0.00072 32.1 7.4 43 40-82 107-149 (207)
45 d2fnaa2 c.37.1.20 (A:1-283) Ar 57.0 9.7 0.00071 33.5 7.0 28 114-141 231-258 (283)
46 d1njfa_ c.37.1.20 (A:) delta p 34.1 18 0.0013 31.2 4.6 42 40-81 114-155 (239)
47 d2gnoa2 c.37.1.20 (A:11-208) g 29.7 21 0.0016 29.6 4.1 43 40-82 78-120 (198)
48 d1g5ta_ c.37.1.11 (A:) ATP:cor 24.4 52 0.0038 25.9 5.3 51 31-81 83-137 (157)
49 g1f2t.1 c.37.1.12 (A:,B:) Rad5 20.0 39 0.0028 29.4 4.2 54 34-87 218-273 (292)
No 1
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=99.84 E-value=2.4e-21 Score=188.50 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHHcCCceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCchhhhccCCc-ch-----------
Q 044935 25 VEFQSLMQHIQECVEGEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNETTAHNMGST-NI----------- 92 (683)
Q Consensus 25 ~~~~~~~~~l~~~l~~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~v~~~~~~~-~~----------- 92 (683)
.........+++.+.+||+|+||||||+. .+|..+. ..|||||||||++.++..+... ..
T Consensus 119 ~~~~~~~~~~~~~L~~kr~LlVLDDv~~~--~~~~~~~------~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea 190 (277)
T d2a5yb3 119 TSVVLKRMICNALIDRPNTLFVFDDVVQE--ETIRWAQ------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDEC 190 (277)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHHHHHH------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHH
T ss_pred hhHHHHHHHHHHHhccCCeeEecchhhHH--hhhhhhc------ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHH
Confidence 44455566788999999999999999976 3455433 2489999999999999876543 23
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCHHHHHHHHHhhhhccccccccchHHHHHhhcC
Q 044935 93 IQLMFSFLGKSMEGRENLEKIGREIVGKCKGLPLAVKTIGSLLRSKNNEEEWKNILESEIWEHEVVKKGLLAPLLLSYNE 172 (683)
Q Consensus 93 ~~ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~ 172 (683)
.++|..+++.. ...+..++++++|+++|+|+||||+++|+.|+.+ +.+.|....+... .....++.+++.+||++
T Consensus 191 ~~Lf~~~~~~~-~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~---~~~~~~v~~il~~sY~~ 265 (277)
T d2a5yb3 191 YDFLEAYGMPM-PVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLE---SRGLVGVECITPYSYKS 265 (277)
T ss_dssp HHHHHHTSCCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHH---HHCSSTTCCCSSSSSSS
T ss_pred HHHHHHHhCCc-cCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHh---cCcHHHHHHHHHHHHhc
Confidence 34455555544 3345578899999999999999999999999877 7888888766532 22346688999999999
Q ss_pred CChhhHHHhhh
Q 044935 173 LPSKVKHYFSY 183 (683)
Q Consensus 173 L~~~~k~~fl~ 183 (683)
||+++|.||-+
T Consensus 266 L~~~lk~c~~~ 276 (277)
T d2a5yb3 266 LAMALQRCVEV 276 (277)
T ss_dssp HHHHHHHHHHT
T ss_pred ccHHHHHHHHh
Confidence 99999999965
No 2
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.79 E-value=5.1e-20 Score=184.28 Aligned_cols=123 Identities=21% Similarity=0.316 Sum_probs=89.9
Q ss_pred CCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCc-ccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 299 RRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPI-KEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
.+++.|+++++.+... ..+|..+.++++|++|+|+++ +.+ ..+|..|++|++|++|+|++|......|..+..+
T Consensus 50 ~~v~~L~L~~~~l~g~-~~lp~~l~~L~~L~~L~Ls~~----N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 124 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEEEE----TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred EEEEEEECCCCCCCCC-CCCChHHhcCccccccccccc----cccccccccccccccccchhhhccccccccccccccch
Confidence 3577788888765422 236677888888888888752 222 3688888888888888888888444455667788
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCC
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELI 426 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 426 (683)
.+|+++++++|.....+|..+.++++|+++++++|.....+|..++.+.
T Consensus 125 ~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~ 173 (313)
T d1ogqa_ 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred hhhcccccccccccccCchhhccCcccceeecccccccccccccccccc
Confidence 8888888888876777788888888888888888866666676655443
No 3
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.78 E-value=4e-18 Score=175.75 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=41.4
Q ss_pred ccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecC
Q 044935 463 EQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSY 542 (683)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 542 (683)
..+.+|+.|++++|.+.. ++.+..+++|+.|++++|.+.. + ..+..+++|+.|++++
T Consensus 216 ~~~~~L~~L~l~~n~l~~-------------------~~~l~~l~~L~~L~l~~n~l~~--~--~~~~~~~~L~~L~l~~ 272 (384)
T d2omza2 216 GILTNLDELSLNGNQLKD-------------------IGTLASLTNLTDLDLANNQISN--L--APLSGLTKLTELKLGA 272 (384)
T ss_dssp GGCTTCCEEECCSSCCCC-------------------CGGGGGCTTCSEEECCSSCCCC--C--GGGTTCTTCSEEECCS
T ss_pred cccCCCCEEECCCCCCCC-------------------cchhhcccccchhccccCccCC--C--CcccccccCCEeeccC
Confidence 345566666666665332 1234445566666666665544 3 1245566666666665
Q ss_pred CCCCCCCCCCCCCCCcceEEecC
Q 044935 543 CRNCEHLPPLGKLPSLEDLHILG 565 (683)
Q Consensus 543 ~~~~~~~~~l~~l~~L~~L~L~~ 565 (683)
|... .++.+..++.++.+.+.+
T Consensus 273 ~~l~-~~~~~~~~~~l~~l~~~~ 294 (384)
T d2omza2 273 NQIS-NISPLAGLTALTNLELNE 294 (384)
T ss_dssp SCCC-CCGGGTTCTTCSEEECCS
T ss_pred cccC-CCCccccccccccccccc
Confidence 5433 233344555555555533
No 4
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.78 E-value=4.8e-19 Score=177.07 Aligned_cols=245 Identities=19% Similarity=0.160 Sum_probs=167.5
Q ss_pred CceEEEEEEecCCCC---cccccchhhhccCCccEEEEeC-CCCccccccchhhhcCCCceeEEEecccCCcccCccc-c
Q 044935 272 KKVLHLMLTIDEGTS---VPISIWNNVKRMRRLRSLSVEG-GEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKE-I 346 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-l 346 (683)
.+++.+.+.++.... +|..+.+ +++|++|++++ |.+ .+.+|..|.++++|++|+|++|. +.. .
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~----L~~L~~L~Ls~~N~l---~g~iP~~i~~L~~L~~L~Ls~N~-----l~~~~ 117 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLAN----LPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTN-----VSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG----CTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEEC-----CEEEC
T ss_pred EEEEEEECCCCCCCCCCCCChHHhc----Ccccccccccccccc---ccccccccccccccchhhhcccc-----ccccc
Confidence 478999999987663 4555544 99999999997 554 24578889999999999999954 444 4
Q ss_pred cccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhccccccccccc-ceEecCCCccccccccccCCC
Q 044935 347 PTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKL-MYLDNEGTNSLRFLPVGIGEL 425 (683)
Q Consensus 347 p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L-~~L~l~~~~~~~~~p~~~~~l 425 (683)
|..+..+.+|+++++++|.....+|..++++++|+++++++|.....+|..+..+.++ +.+++++|......|..++.+
T Consensus 118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l 197 (313)
T d1ogqa_ 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence 5668889999999999999778899999999999999999998666889999888876 888888886655556555443
Q ss_pred CCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCC
Q 044935 426 ISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGP 505 (683)
Q Consensus 426 ~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (683)
..+. + .... .......+..+..+.+++.++++.|.+.. .+..++.
T Consensus 198 ~~~~-l------------~l~~----~~~~~~~~~~~~~~~~l~~l~~~~~~l~~------------------~~~~~~~ 242 (313)
T d1ogqa_ 198 NLAF-V------------DLSR----NMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------DLGKVGL 242 (313)
T ss_dssp CCSE-E------------ECCS----SEEEECCGGGCCTTSCCSEEECCSSEECC------------------BGGGCCC
T ss_pred cccc-c------------cccc----ccccccccccccccccccccccccccccc------------------ccccccc
Confidence 2211 0 0000 00111123344555666666666665322 1234555
Q ss_pred CCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecC
Q 044935 506 PPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILG 565 (683)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~ 565 (683)
+++|+.|++++|.+... + |.+++.+++|++|+|++|.+.+.+|.++.+++|+.+++.+
T Consensus 243 ~~~L~~L~Ls~N~l~g~-i-P~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~ 300 (313)
T d1ogqa_ 243 SKNLNGLDLRNNRIYGT-L-PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp CTTCCEEECCSSCCEEC-C-CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred ccccccccCccCeeccc-C-ChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence 66677777766666531 4 5666666777777777766665666655555666555544
No 5
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.75 E-value=1.5e-17 Score=171.46 Aligned_cols=303 Identities=19% Similarity=0.212 Sum_probs=181.2
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+.+|+.|+++++.+.. + +.+..+++|++|++++ +.++.+|. ++++++|++|++++|. +..+++ ++++
T Consensus 43 l~~l~~L~l~~~~I~~----l-~gl~~L~nL~~L~Ls~-----N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~~-l~~l 109 (384)
T d2omza2 43 LDQVTTLQADRLGIKS----I-DGVEYLNNLTQINFSN-----NQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANL 109 (384)
T ss_dssp HTTCCEEECCSSCCCC----C-TTGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred hCCCCEEECCCCCCCC----c-cccccCCCCCEEeCcC-----CcCCCCcc-ccCCcccccccccccc-cccccc-cccc
Confidence 7789999999988642 3 2377899999999999 55666764 8899999999999998 778876 8999
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCC-------CCccccccCccCCCeeEcCCCC
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL-------RNLGSLKKLNLLRECWICGRGG 450 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L-------~~l~~l~~L~~L~~l~i~~~~~ 450 (683)
++|+.|+++++. ...++. ......+..+....+......+......... ..+..+.............
T Consensus 110 ~~L~~L~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 184 (384)
T d2omza2 110 TNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS--- 184 (384)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS---
T ss_pred cccccccccccc-cccccc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc---
Confidence 999999998876 444432 2233344444333221100000000000000 0111111111111111000
Q ss_pred CCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHh
Q 044935 451 VSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIM 530 (683)
Q Consensus 451 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 530 (683)
...........+++++.+.++.|.+.+. .....+++|++|++++|.+.. + ..+.
T Consensus 185 ---~~~~~~~~~~~l~~~~~l~l~~n~i~~~-------------------~~~~~~~~L~~L~l~~n~l~~--~--~~l~ 238 (384)
T d2omza2 185 ---NKVSDISVLAKLTNLESLIATNNQISDI-------------------TPLGILTNLDELSLNGNQLKD--I--GTLA 238 (384)
T ss_dssp ---SCCCCCGGGGGCTTCSEEECCSSCCCCC-------------------GGGGGCTTCCEEECCSSCCCC--C--GGGG
T ss_pred ---cccccccccccccccceeeccCCccCCC-------------------CcccccCCCCEEECCCCCCCC--c--chhh
Confidence 0011123455677888888888764331 123446789999999888766 3 4577
Q ss_pred hccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCC--------CC--CCCccccccccccccccc
Q 044935 531 SLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVE--------SD--TDGSSVIAFPKLKRLAFH 600 (683)
Q Consensus 531 ~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~--------~~--~~~~~~~~~~~L~~L~l~ 600 (683)
.+++|+.|++++|... .++.++.+++|+.|+++++..- .... +.... .. ........+++++.|+++
T Consensus 239 ~l~~L~~L~l~~n~l~-~~~~~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls 315 (384)
T d2omza2 239 SLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315 (384)
T ss_dssp GCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred cccccchhccccCccC-CCCcccccccCCEeeccCcccC-CCCc-cccccccccccccccccccccccchhcccCeEECC
Confidence 8899999999998654 4556888899999998764321 1110 00000 00 001113345666666555
Q ss_pred ccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 601 TMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 601 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
++ .+++.. .+..+|+|++|++++|+ ++.+| .+.++++|++|++++|+
T Consensus 316 ~n------~l~~l~--~l~~l~~L~~L~L~~n~-l~~l~-~l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 316 FN------NISDIS--PVSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQ 362 (384)
T ss_dssp SS------CCSCCG--GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSC
T ss_pred CC------CCCCCc--ccccCCCCCEEECCCCC-CCCCh-hHcCCCCCCEEECCCCc
Confidence 44 232221 25678899999999885 56666 57778999999998885
No 6
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.70 E-value=1.2e-16 Score=158.64 Aligned_cols=262 Identities=18% Similarity=0.215 Sum_probs=134.9
Q ss_pred ccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCcccc-chHHhccc
Q 044935 301 LRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRL-PEVLCELY 378 (683)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~ 378 (683)
.++++.++..+. .+|..+. +++++|+|++ +.++++|+ .|.++++|++|++++|. +..+ |..+.+++
T Consensus 12 ~~~~~C~~~~L~----~lP~~l~--~~l~~L~Ls~-----N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~ 79 (305)
T d1xkua_ 12 LRVVQCSDLGLE----KVPKDLP--PDTALLDLQN-----NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLV 79 (305)
T ss_dssp TTEEECTTSCCC----SCCCSCC--TTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCT
T ss_pred CCEEEecCCCCC----ccCCCCC--CCCCEEECcC-----CcCCCcChhHhhcccccccccccccc-ccccchhhhhCCC
Confidence 445555555442 2333232 4677777777 55566664 46777777777777777 4444 45577777
Q ss_pred CCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhH
Q 044935 379 NLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEAR 458 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~ 458 (683)
+|++|++++|. ++.+|..+ ...|..|+..++.. ..++...
T Consensus 80 ~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~~~n~l-~~l~~~~------------------------------------ 119 (305)
T d1xkua_ 80 KLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEI-TKVRKSV------------------------------------ 119 (305)
T ss_dssp TCCEEECCSSC-CSBCCSSC--CTTCCEEECCSSCC-CBBCHHH------------------------------------
T ss_pred ccCEecccCCc-cCcCccch--hhhhhhhhccccch-hhhhhhh------------------------------------
Confidence 77777777775 66666543 24566666665522 2222110
Q ss_pred HhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceE
Q 044935 459 RAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDL 538 (683)
Q Consensus 459 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 538 (683)
+.....+..+....+... ........+..+++|+.+++.+|.+.. + |.. .+++|++|
T Consensus 120 ---~~~~~~~~~l~~~~n~~~---------------~~~~~~~~~~~l~~L~~l~l~~n~l~~--l-~~~--~~~~L~~L 176 (305)
T d1xkua_ 120 ---FNGLNQMIVVELGTNPLK---------------SSGIENGAFQGMKKLSYIRIADTNITT--I-PQG--LPPSLTEL 176 (305)
T ss_dssp ---HTTCTTCCEEECCSSCCC---------------GGGBCTTGGGGCTTCCEEECCSSCCCS--C-CSS--CCTTCSEE
T ss_pred ---hhcccccccccccccccc---------------ccCCCccccccccccCccccccCCccc--c-Ccc--cCCccCEE
Confidence 011111222222211100 000011223334455555555555444 3 221 24566666
Q ss_pred eecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccc
Q 044935 539 YLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGE 617 (683)
Q Consensus 539 ~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 617 (683)
++++|......+. +..++.++.|+++++. +....... ...+++|++|++.++ .++. +|..
T Consensus 177 ~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~L~~------lp~~ 237 (305)
T d1xkua_ 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-----------LANTPHLRELHLNNN-KLVK------VPGG 237 (305)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTT-----------GGGSTTCCEEECCSS-CCSS------CCTT
T ss_pred ECCCCcCCCCChhHhhcccccccccccccc-cccccccc-----------ccccccceeeecccc-cccc------cccc
Confidence 6666654444333 5556666666665542 22221111 113566666655554 2332 3455
Q ss_pred cccCCcccEEeecCCCCCCcCCcC-------CCCCCCCceEEEeCCc
Q 044935 618 IIIMPRLSSLSIDDCPKLKALPDR-------LLQKTTLQRLEIYGCP 657 (683)
Q Consensus 618 ~~~l~~L~~L~l~~c~~l~~lp~~-------l~~l~~L~~L~l~~c~ 657 (683)
+..+++|++|+|++|+ ++.++.. ....++|+.|++++||
T Consensus 238 l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 238 LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence 6677788888887775 5555432 2345677788888877
No 7
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.70 E-value=2.7e-16 Score=156.18 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=174.7
Q ss_pred ceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcccccccccccc
Q 044935 327 CLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQGIGKLRKLM 405 (683)
Q Consensus 327 ~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 405 (683)
.++.++-++ ..++++|..+. +++++|+|++|. ++.+|+ .+.++++|++|++++|......|..+.++++|+
T Consensus 11 ~~~~~~C~~-----~~L~~lP~~l~--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~ 82 (305)
T d1xkua_ 11 HLRVVQCSD-----LGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82 (305)
T ss_dssp ETTEEECTT-----SCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred cCCEEEecC-----CCCCccCCCCC--CCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccC
Confidence 456777766 67789998774 689999999998 999986 589999999999999984443466789999999
Q ss_pred eEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCccc
Q 044935 406 YLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQ 485 (683)
Q Consensus 406 ~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 485 (683)
+|++++|. +..+|..+. ..+..|.+..+.+....
T Consensus 83 ~L~l~~n~-l~~l~~~~~------------------------------------------~~l~~L~~~~n~l~~l~--- 116 (305)
T d1xkua_ 83 RLYLSKNQ-LKELPEKMP------------------------------------------KTLQELRVHENEITKVR--- 116 (305)
T ss_dssp EEECCSSC-CSBCCSSCC------------------------------------------TTCCEEECCSSCCCBBC---
T ss_pred EecccCCc-cCcCccchh------------------------------------------hhhhhhhccccchhhhh---
Confidence 99999984 455554321 23334444443322111
Q ss_pred ccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecC
Q 044935 486 AGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILG 565 (683)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~ 565 (683)
...+.....+..+....+........+..+..+++|+.+++++|.... ++. ..+++|+.|++.+
T Consensus 117 --------------~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~-~~~~~L~~L~l~~ 180 (305)
T d1xkua_ 117 --------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ-GLPPSLTELHLDG 180 (305)
T ss_dssp --------------HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS-SCCTTCSEEECTT
T ss_pred --------------hhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCc-ccCCccCEEECCC
Confidence 123445567777887776554433335677889999999999997554 333 3468999999988
Q ss_pred CCCeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCC
Q 044935 566 MESVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQK 645 (683)
Q Consensus 566 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 645 (683)
+.........+. .++.++.|.++++ .+....+..+..+++|++|+|++|. ++.+|..+.++
T Consensus 181 n~~~~~~~~~~~------------~~~~l~~L~~s~n------~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l 241 (305)
T d1xkua_ 181 NKITKVDAASLK------------GLNNLAKLGLSFN------SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADH 241 (305)
T ss_dssp SCCCEECTGGGT------------TCTTCCEEECCSS------CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTC
T ss_pred CcCCCCChhHhh------------ccccccccccccc------cccccccccccccccceeeeccccc-ccccccccccc
Confidence 765444433332 4677888865544 4444556777889999999999995 67899999999
Q ss_pred CCCceEEEeCCc
Q 044935 646 TTLQRLEIYGCP 657 (683)
Q Consensus 646 ~~L~~L~l~~c~ 657 (683)
++|+.|++++|.
T Consensus 242 ~~L~~L~Ls~N~ 253 (305)
T d1xkua_ 242 KYIQVVYLHNNN 253 (305)
T ss_dssp SSCCEEECCSSC
T ss_pred cCCCEEECCCCc
Confidence 999999999986
No 8
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64 E-value=7.1e-16 Score=149.49 Aligned_cols=195 Identities=20% Similarity=0.157 Sum_probs=117.7
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccchHHhc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLPEVLCE 376 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~ 376 (683)
...+...+.+++.+.. +|..+. ++|++|+|++ +.+..+| ..|.++++|++|+|++|. ++.+|. ++.
T Consensus 9 ~~~~~~v~C~~~~L~~----iP~~lp--~~l~~L~Ls~-----N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~ 75 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTA----LPPDLP--KDTTILHLSE-----NLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGT 75 (266)
T ss_dssp STTCCEEECTTSCCSS----CCSCCC--TTCCEEECTT-----SCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSC
T ss_pred cCCCeEEEccCCCCCe----eCcCcC--cCCCEEECcC-----CcCCCcCHHHhhcccccccccccccc-cccccc-ccc
Confidence 3344445555555422 333222 3567777776 4555555 346667777777777776 666665 466
Q ss_pred ccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhH
Q 044935 377 LYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGE 456 (683)
Q Consensus 377 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~ 456 (683)
+++|++|+|++|. +...|..+.++++|+.|+++++... .++..
T Consensus 76 l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~----------------------------------- 118 (266)
T d1p9ag_ 76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLT-SLPLG----------------------------------- 118 (266)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCC-CCCSS-----------------------------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccc-eeecc-----------------------------------
Confidence 7777777777665 5666666667777777777666322 11110
Q ss_pred hHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccc
Q 044935 457 ARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLR 536 (683)
Q Consensus 457 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 536 (683)
.+..+.+++.|.+++|.+...+ +..+..+++|+.|++++|.+.. +++..+..+++|+
T Consensus 119 ----~~~~l~~l~~L~l~~n~l~~l~-----------------~~~~~~l~~l~~l~l~~N~l~~--~~~~~~~~l~~L~ 175 (266)
T d1p9ag_ 119 ----ALRGLGELQELYLKGNELKTLP-----------------PGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLD 175 (266)
T ss_dssp ----TTTTCTTCCEEECTTSCCCCCC-----------------TTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCC
T ss_pred ----ccccccccccccccccccceec-----------------cccccccccchhcccccccccc--cCccccccccccc
Confidence 1122344455555555432211 2234456778888888887776 6567778888888
Q ss_pred eEeecCCCCCCCCCC-CCCCCCcceEEecCC
Q 044935 537 DLYLSYCRNCEHLPP-LGKLPSLEDLHILGM 566 (683)
Q Consensus 537 ~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~ 566 (683)
+|+|++|.+. .+|. +..+++|+.|+|.+.
T Consensus 176 ~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred eeecccCCCc-ccChhHCCCCCCCEEEecCC
Confidence 8888888765 4554 777888888888653
No 9
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=1.6e-15 Score=148.73 Aligned_cols=110 Identities=19% Similarity=0.125 Sum_probs=60.0
Q ss_pred CCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCCCCeeEecccccCCCCC
Q 044935 504 GPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGMESVKRVGNKFLGVESD 582 (683)
Q Consensus 504 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 582 (683)
..+++|+.+++++|.+.. +++..+..+++|+.|++++|.+....+. +..+++|+.+++.++.
T Consensus 126 ~~~~~L~~l~l~~N~l~~--i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~--------------- 188 (284)
T d1ozna_ 126 RGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR--------------- 188 (284)
T ss_dssp TTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---------------
T ss_pred chhcccchhhhccccccc--cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc---------------
Confidence 344556666666665554 4445555556666666666544332222 4455555555553322
Q ss_pred CCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 583 TDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 583 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
+....|..+..+++|+.|++++|...+..|..+..+++|+.|++++||
T Consensus 189 ---------------------------l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 189 ---------------------------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp ---------------------------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ---------------------------ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence 223334455566667777776666544444455566677777776654
No 10
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61 E-value=1.6e-15 Score=146.87 Aligned_cols=195 Identities=21% Similarity=0.133 Sum_probs=147.4
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLL 354 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~ 354 (683)
..+.-.+..+..+|..+ .+++++|++++|.+. ...+..|.++++|++|+|++ +.+..+|. ++.++
T Consensus 13 ~~v~C~~~~L~~iP~~l------p~~l~~L~Ls~N~i~---~l~~~~f~~l~~L~~L~L~~-----N~l~~l~~-~~~l~ 77 (266)
T d1p9ag_ 13 LEVNCDKRNLTALPPDL------PKDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDR-----AELTKLQV-DGTLP 77 (266)
T ss_dssp CEEECTTSCCSSCCSCC------CTTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTT-----SCCCEEEC-CSCCT
T ss_pred eEEEccCCCCCeeCcCc------CcCCCEEECcCCcCC---CcCHHHhhcccccccccccc-----cccccccc-ccccc
Confidence 33444555667777655 357999999999864 44456799999999999999 55566764 57899
Q ss_pred CCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCcccc
Q 044935 355 HLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSL 434 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l 434 (683)
+|++|++++|. +...|..+.++++|++|+++++......+..+..+.++++|++.+|. +..+|..
T Consensus 78 ~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~------------- 142 (266)
T d1p9ag_ 78 VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPG------------- 142 (266)
T ss_dssp TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTT-------------
T ss_pred ccccccccccc-ccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccc-------------
Confidence 99999999998 88888889999999999999988444344556889999999999884 3343322
Q ss_pred ccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEE
Q 044935 435 KKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRI 514 (683)
Q Consensus 435 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 514 (683)
.+..+.+++.+++++|.+...+ +..+..+++|++|+|
T Consensus 143 --------------------------~~~~l~~l~~l~l~~N~l~~~~-----------------~~~~~~l~~L~~L~L 179 (266)
T d1p9ag_ 143 --------------------------LLTPTPKLEKLSLANNNLTELP-----------------AGLLNGLENLDTLLL 179 (266)
T ss_dssp --------------------------TTTTCTTCCEEECTTSCCSCCC-----------------TTTTTTCTTCCEEEC
T ss_pred --------------------------cccccccchhcccccccccccC-----------------ccccccccccceeec
Confidence 1234566777777777654322 345677889999999
Q ss_pred eeecCCCCccCcchHhhccccceEeecCCCC
Q 044935 515 HEYRGRRNVVPINWIMSLTNLRDLYLSYCRN 545 (683)
Q Consensus 515 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 545 (683)
++|.+.. + |..+..+++|+.|+|++|+.
T Consensus 180 s~N~L~~--l-p~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 180 QENSLYT--I-PKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CSSCCCC--C-CTTTTTTCCCSEEECCSCCB
T ss_pred ccCCCcc--c-ChhHCCCCCCCEEEecCCCC
Confidence 9998876 7 55666889999999998863
No 11
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.57 E-value=7.1e-15 Score=143.99 Aligned_cols=214 Identities=23% Similarity=0.234 Sum_probs=137.9
Q ss_pred EEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCc
Q 044935 279 LTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLK 357 (683)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~ 357 (683)
..+.....+|..+ .+.+++|++++|.+. ...+..|.++++|++|++++ +.+..++ ..+..+..++
T Consensus 18 c~~~~L~~iP~~i------p~~~~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~ls~-----n~l~~i~~~~~~~~~~~~ 83 (284)
T d1ozna_ 18 CPQQGLQAVPVGI------PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHS-----NVLARIDAAAFTGLALLE 83 (284)
T ss_dssp CCSSCCSSCCTTC------CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCS-----SCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCccCCCC------CCCCCEEECcCCcCC---CCCHHHhhcccccccccccc-----cccccccccccccccccc
Confidence 3444455666544 345778888888753 33445677888888888887 4444443 3355677777
Q ss_pred EEeecCCCCcccc-chHHhcccCCcEEeccCccchhhc-ccccccccccceEecCCCccccccccccCCCCCCCCccccc
Q 044935 358 YLSLFGESEIKRL-PEVLCELYNLERLDVRFCVNLREL-LQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLK 435 (683)
Q Consensus 358 ~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~ 435 (683)
.+....+..+..+ |..+.++++|++|++++|. +..+ +..+..+++|+.+++++|. +..+|..
T Consensus 84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~-------------- 147 (284)
T d1ozna_ 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDD-------------- 147 (284)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT--------------
T ss_pred ccccccccccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhcccc-ccccChh--------------
Confidence 7777655556666 3457778888888888776 4433 3445667778888887773 2333321
Q ss_pred cCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEe
Q 044935 436 KLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIH 515 (683)
Q Consensus 436 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 515 (683)
.+..+++|+.|++++|.+...+ +..+..+++|+.+.++
T Consensus 148 -------------------------~f~~~~~L~~L~l~~N~l~~l~-----------------~~~f~~l~~L~~l~l~ 185 (284)
T d1ozna_ 148 -------------------------TFRDLGNLTHLFLHGNRISSVP-----------------ERAFRGLHSLDRLLLH 185 (284)
T ss_dssp -------------------------TTTTCTTCCEEECCSSCCCEEC-----------------TTTTTTCTTCCEEECC
T ss_pred -------------------------HhccccchhhcccccCcccccc-----------------hhhhccccccchhhhh
Confidence 1234456667777766643211 2455667788888888
Q ss_pred eecCCCCccCcchHhhccccceEeecCCCCCCCCCC-CCCCCCcceEEecCC
Q 044935 516 EYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPP-LGKLPSLEDLHILGM 566 (683)
Q Consensus 516 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~ 566 (683)
+|.+.. ++|.+|..+++|++|++++|.+.+..+. ++.+++|+.|++++.
T Consensus 186 ~N~l~~--i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 186 QNRVAH--VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp SSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred hccccc--cChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence 877766 5577788888888888888876654443 777888888888553
No 12
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.53 E-value=1.4e-13 Score=139.25 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=40.3
Q ss_pred cccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeCCc
Q 044935 590 AFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYGCP 657 (683)
Q Consensus 590 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 657 (683)
.+++|++|++++|. ++. +|. .+++|+.|++++|. ++.+|.. +++|++|++++|+
T Consensus 282 ~~~~L~~L~Ls~N~-l~~------lp~---~~~~L~~L~L~~N~-L~~l~~~---~~~L~~L~L~~N~ 335 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK-LIE------LPA---LPPRLERLIASFNH-LAEVPEL---PQNLKQLHVEYNP 335 (353)
T ss_dssp CCTTCCEEECCSSC-CSC------CCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCc-cCc------ccc---ccCCCCEEECCCCc-CCccccc---cCCCCEEECcCCc
Confidence 46789999877763 443 333 47899999998886 6678864 5689999999987
No 13
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.53 E-value=3.5e-14 Score=133.83 Aligned_cols=187 Identities=19% Similarity=0.206 Sum_probs=98.2
Q ss_pred CCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccc
Q 044935 324 KLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRK 403 (683)
Q Consensus 324 ~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 403 (683)
.+.+|+.|++.+ +.+++++ .++.+++|++|++++|. +..+++ +.++++|+++++++|. ++.++ .+..+++
T Consensus 39 ~l~~L~~L~l~~-----~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~ 108 (227)
T d1h6ua2 39 DLDGITTLSAFG-----TGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQS 108 (227)
T ss_dssp HHHTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTT
T ss_pred HcCCcCEEECCC-----CCCCcch-hHhcCCCCcEeecCCce-eecccc-cccccccccccccccc-ccccc-ccccccc
Confidence 344555555555 3334442 35555555555555555 444443 5555555555555554 33332 3455555
Q ss_pred cceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCc
Q 044935 404 LMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDE 483 (683)
Q Consensus 404 L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 483 (683)
|+.++++++..... + .+..... +..+.+....... ...+..+++|+.|.+++|.+.+
T Consensus 109 L~~l~l~~~~~~~~-~-~~~~~~~------------~~~l~~~~~~~~~------~~~~~~~~~L~~L~l~~n~~~~--- 165 (227)
T d1h6ua2 109 IKTLDLTSTQITDV-T-PLAGLSN------------LQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQVSD--- 165 (227)
T ss_dssp CCEEECTTSCCCCC-G-GGTTCTT------------CCEEECCSSCCCC------CGGGGGCTTCCEEECCSSCCCC---
T ss_pred cccccccccccccc-c-hhccccc------------hhhhhchhhhhch------hhhhcccccccccccccccccc---
Confidence 55555555432111 0 0111100 1111111000000 0123456677777777775332
Q ss_pred ccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEe
Q 044935 484 EQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHI 563 (683)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L 563 (683)
...++.+++|+.|++++|.+.. + ..++.+++|++|++++|++ +.++.++.+++|+.|++
T Consensus 166 ----------------~~~l~~l~~L~~L~Ls~n~l~~--l--~~l~~l~~L~~L~Ls~N~l-t~i~~l~~l~~L~~L~l 224 (227)
T d1h6ua2 166 ----------------LTPLANLSKLTTLKADDNKISD--I--SPLASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTL 224 (227)
T ss_dssp ----------------CGGGTTCTTCCEEECCSSCCCC--C--GGGGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEE
T ss_pred ----------------chhhcccccceecccCCCccCC--C--hhhcCCCCCCEEECcCCcC-CCCcccccCCCCCEEEe
Confidence 1235667788888888887665 4 2367788888888888854 44666778888888877
Q ss_pred c
Q 044935 564 L 564 (683)
Q Consensus 564 ~ 564 (683)
+
T Consensus 225 s 225 (227)
T d1h6ua2 225 T 225 (227)
T ss_dssp E
T ss_pred e
Confidence 4
No 14
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.50 E-value=4.2e-14 Score=131.25 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=35.7
Q ss_pred CCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEec
Q 044935 505 PPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHIL 564 (683)
Q Consensus 505 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~ 564 (683)
.+++|+.+++++|.+.. + + .+..+++|+.|++++|.+ +.++.+..+++|+.|+|+
T Consensus 154 ~l~~L~~l~l~~n~l~~--i-~-~l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 154 RLTKLDTLSLEDNQISD--I-V-PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELF 208 (210)
T ss_dssp GCTTCSEEECCSSCCCC--C-G-GGTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEE
T ss_pred ccccccccccccccccc--c-c-cccCCCCCCEEECCCCCC-CCChhhcCCCCCCEEEcc
Confidence 35566666666666554 3 2 256777777777777754 345667777777777774
No 15
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=1.9e-14 Score=140.34 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=94.3
Q ss_pred ccCCCCCcEEeecCCCCcc--ccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCC
Q 044935 350 IKNLLHLKYLSLFGESEIK--RLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELIS 427 (683)
Q Consensus 350 i~~l~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 427 (683)
.....+|++||+++|. +. .++..+.++++|++|++++|......+..+.++++|++|++++|..++.
T Consensus 42 ~~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd---------- 110 (284)
T d2astb2 42 HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---------- 110 (284)
T ss_dssp CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH----------
T ss_pred hccCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc----------
Confidence 3445678888888776 43 2455567788888888888864445566677778888888877743221
Q ss_pred CCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhc-CCC
Q 044935 428 LRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEAL-GPP 506 (683)
Q Consensus 428 L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 506 (683)
.........+++|++|++++|.... ...+...+ ..+
T Consensus 111 ----------------------------~~l~~l~~~~~~L~~L~ls~c~~~~---------------~~~~~~~~~~~~ 147 (284)
T d2astb2 111 ----------------------------FALQTLLSSCSRLDELNLSWCFDFT---------------EKHVQVAVAHVS 147 (284)
T ss_dssp ----------------------------HHHHHHHHHCTTCCEEECCCCTTCC---------------HHHHHHHHHHSC
T ss_pred ----------------------------cccchhhHHHHhccccccccccccc---------------cccchhhhcccc
Confidence 0111123345667777777664110 01111111 224
Q ss_pred CCccEEEEeeecC--CCCccCcchHhhccccceEeecCCCCCC--CCCCCCCCCCcceEEecCCCCe
Q 044935 507 PNLKELRIHEYRG--RRNVVPINWIMSLTNLRDLYLSYCRNCE--HLPPLGKLPSLEDLHILGMESV 569 (683)
Q Consensus 507 ~~L~~L~l~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~L~~~~~l 569 (683)
++|+.|+++++.. ....+ ......+++|++|++++|...+ .+..++.+++|++|++++|..+
T Consensus 148 ~~L~~L~l~~~~~~i~~~~l-~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i 213 (284)
T d2astb2 148 ETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 213 (284)
T ss_dssp TTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cccchhhhcccccccccccc-cccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence 5777777776532 11112 2334466777777777775433 2233666677777777766654
No 16
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.49 E-value=6e-14 Score=129.02 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=30.8
Q ss_pred cCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceE
Q 044935 503 LGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDL 561 (683)
Q Consensus 503 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 561 (683)
+..+++|+.|++.+|.+.. + ..++.+++|++|++++|++ +.++.++.+++|++|
T Consensus 146 l~~~~~L~~L~l~~n~l~~--l--~~l~~l~~L~~L~ls~N~i-~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 146 LSGLTSLQQLNFSSNQVTD--L--KPLANLTTLERLDISSNKV-SDISVLAKLTNLESL 199 (199)
T ss_dssp GTTCTTCSEEECCSSCCCC--C--GGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEE
T ss_pred ccccccccccccccccccC--C--ccccCCCCCCEEECCCCCC-CCCccccCCCCCCcC
Confidence 3445566666666665544 3 2255666777777776653 334555666666654
No 17
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.46 E-value=2.3e-13 Score=128.09 Aligned_cols=191 Identities=19% Similarity=0.270 Sum_probs=119.5
Q ss_pred cccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCC
Q 044935 349 NIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISL 428 (683)
Q Consensus 349 ~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 428 (683)
....+.+|++|++.+|. ++.++. +.++++|++|++++|. +..++ .+..+++|+++++++|.. ..++ +
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~l~~-l~~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~n~~-~~i~-~------- 102 (227)
T d1h6ua2 36 TQADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSGNPL-KNVS-A------- 102 (227)
T ss_dssp CHHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCSCCC-SCCG-G-------
T ss_pred CHHHcCCcCEEECCCCC-CCcchh-HhcCCCCcEeecCCce-eeccc-cccccccccccccccccc-cccc-c-------
Confidence 34678889999999988 888864 8899999999999887 55554 478888999998887732 2221 1
Q ss_pred CCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCC
Q 044935 429 RNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPN 508 (683)
Q Consensus 429 ~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (683)
+..+++|+.+.++.+.... ...+...+.
T Consensus 103 ---------------------------------l~~l~~L~~l~l~~~~~~~-------------------~~~~~~~~~ 130 (227)
T d1h6ua2 103 ---------------------------------IAGLQSIKTLDLTSTQITD-------------------VTPLAGLSN 130 (227)
T ss_dssp ---------------------------------GTTCTTCCEEECTTSCCCC-------------------CGGGTTCTT
T ss_pred ---------------------------------ccccccccccccccccccc-------------------cchhccccc
Confidence 1223344444444443211 122344556
Q ss_pred ccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCCCCCCCCCCCcceEEecCCCCeeEecccccCCCCCCCCccc
Q 044935 509 LKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEHLPPLGKLPSLEDLHILGMESVKRVGNKFLGVESDTDGSSV 588 (683)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 588 (683)
++.+.++++.... ...+..+++|++|++++|... ..+.++.+++|+.|+++++.
T Consensus 131 ~~~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~Ls~n~--------------------- 184 (227)
T d1h6ua2 131 LQVLYLDLNQITN----ISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNK--------------------- 184 (227)
T ss_dssp CCEEECCSSCCCC----CGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC---------------------
T ss_pred hhhhhchhhhhch----hhhhccccccccccccccccc-cchhhcccccceecccCCCc---------------------
Confidence 6666666655544 233556677777777776543 23335566666666664421
Q ss_pred ccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCCCceEEEeC
Q 044935 589 IAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTTLQRLEIYG 655 (683)
Q Consensus 589 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 655 (683)
++++ + .+..+++|++|+|++|+ ++.+|. +.++++|+.|++++
T Consensus 185 ----------------l~~l------~-~l~~l~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 185 ----------------ISDI------S-PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp ----------------CCCC------G-GGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEE
T ss_pred ----------------cCCC------h-hhcCCCCCCEEECcCCc-CCCCcc-cccCCCCCEEEeeC
Confidence 2211 1 13457888888888885 566663 66788888888864
No 18
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.46 E-value=5.5e-13 Score=134.76 Aligned_cols=289 Identities=20% Similarity=0.221 Sum_probs=152.3
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccC
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKN 352 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~ 352 (683)
.++++.+.++.+..+|.. .++|++|++++|.+. .+|.. +.+|+.|++++|. +..++.-
T Consensus 39 ~l~~LdLs~~~L~~lp~~-------~~~L~~L~Ls~N~l~----~lp~~---~~~L~~L~l~~n~-----l~~l~~l--- 96 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL-------PPHLESLVASCNSLT----ELPEL---PQSLKSLLVDNNN-----LKALSDL--- 96 (353)
T ss_dssp TCSEEECTTSCCSCCCSC-------CTTCSEEECCSSCCS----SCCCC---CTTCCEEECCSSC-----CSCCCSC---
T ss_pred CCCEEEeCCCCCCCCCCC-------CCCCCEEECCCCCCc----ccccc---hhhhhhhhhhhcc-----cchhhhh---
Confidence 456777777777777642 567888888888763 24442 3578888888843 3444321
Q ss_pred CCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCcc
Q 044935 353 LLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLG 432 (683)
Q Consensus 353 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 432 (683)
.+.|++|++++|. +..+|. ++.+++|++|+++++. +...|... ..+..+.+..+... .+..++.++.++.+.
T Consensus 97 p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~---~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~ 168 (353)
T d1jl5a_ 97 PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLE--ELPELQNLPFLTAIY 168 (353)
T ss_dssp CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCS--SCCCCTTCTTCCEEE
T ss_pred ccccccccccccc-cccccc-hhhhccceeecccccc-cccccccc---ccccchhhcccccc--ccccccccccceecc
Confidence 1358888888887 888886 6788888888888776 44444333 23334444333211 112222222222110
Q ss_pred -------ccccCcc-CCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcC
Q 044935 433 -------SLKKLNL-LRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALG 504 (683)
Q Consensus 433 -------~l~~L~~-L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (683)
....... ...+.... ... ........++.|+.+.++.|..... ..
T Consensus 169 l~~n~~~~~~~~~~~~~~l~~~~-~~~-----~~~~~~~~l~~L~~l~l~~n~~~~~---------------------~~ 221 (353)
T d1jl5a_ 169 ADNNSLKKLPDLPLSLESIVAGN-NIL-----EELPELQNLPFLTTIYADNNLLKTL---------------------PD 221 (353)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCS-SCC-----SSCCCCTTCTTCCEEECCSSCCSSC---------------------CS
T ss_pred ccccccccccccccccccccccc-ccc-----ccccccccccccccccccccccccc---------------------cc
Confidence 0000000 00000000 000 0011234566777777776652211 11
Q ss_pred CCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCC----------------CCCCC-CCCCCCcceEEecCCC
Q 044935 505 PPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNC----------------EHLPP-LGKLPSLEDLHILGME 567 (683)
Q Consensus 505 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------------~~~~~-l~~l~~L~~L~L~~~~ 567 (683)
...++..+.+.++.... . +. ..+.+...++..+... ..++. ...+++|++|++++|.
T Consensus 222 ~~~~l~~~~~~~~~~~~--~-~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 295 (353)
T d1jl5a_ 222 LPPSLEALNVRDNYLTD--L-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295 (353)
T ss_dssp CCTTCCEEECCSSCCSC--C-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC
T ss_pred ccccccccccccccccc--c-cc---ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc
Confidence 23345555555544433 1 11 1122222222221110 01111 2346899999997764
Q ss_pred CeeEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccEEeecCCCCCCcCCcCCCCCCC
Q 044935 568 SVKRVGNKFLGVESDTDGSSVIAFPKLKRLAFHTMEELEEWDFRTAIKGEIIIMPRLSSLSIDDCPKLKALPDRLLQKTT 647 (683)
Q Consensus 568 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 647 (683)
+ ...+. .+++|+.|++.+|. +++ +|. .+++|++|++++|+ ++.+|.. ..+
T Consensus 296 -l-------~~lp~--------~~~~L~~L~L~~N~-L~~------l~~---~~~~L~~L~L~~N~-L~~lp~~---~~~ 345 (353)
T d1jl5a_ 296 -L-------IELPA--------LPPRLERLIASFNH-LAE------VPE---LPQNLKQLHVEYNP-LREFPDI---PES 345 (353)
T ss_dssp -C-------SCCCC--------CCTTCCEEECCSSC-CSC------CCC---CCTTCCEEECCSSC-CSSCCCC---CTT
T ss_pred -c-------Ccccc--------ccCCCCEEECCCCc-CCc------ccc---ccCCCCEEECcCCc-CCCCCcc---ccc
Confidence 2 22211 47899999877663 544 333 36799999999998 7889875 456
Q ss_pred CceEEEe
Q 044935 648 LQRLEIY 654 (683)
Q Consensus 648 L~~L~l~ 654 (683)
|+.|.+.
T Consensus 346 L~~L~~~ 352 (353)
T d1jl5a_ 346 VEDLRMN 352 (353)
T ss_dssp CCEEECC
T ss_pred cCeeECc
Confidence 7777653
No 19
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.43 E-value=3.8e-13 Score=124.63 Aligned_cols=165 Identities=19% Similarity=0.219 Sum_probs=106.8
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+..|+.|+++++.+.. ++ .+..+++|++|++++ +.+..++. ++.+++|++|++++|. ++.+|. +..+
T Consensus 45 L~~L~~L~l~~~~i~~----l~-~l~~l~~L~~L~L~~-----n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~~-l~~l 111 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKS----VQ-GIQYLPNVTKLFLNG-----NKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (210)
T ss_dssp HHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred hcCccEEECcCCCCCC----ch-hHhhCCCCCEEeCCC-----ccccCccc-cccCcccccccccccc-cccccc-cccc
Confidence 5567777777776532 22 256677777777777 44445553 5677777777777776 677764 7777
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHh
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEA 457 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~ 457 (683)
++|++|++++|. ...+ ..+..+++|+.+++++|.. ...
T Consensus 112 ~~L~~L~l~~~~-~~~~-~~l~~l~~l~~l~~~~n~l-~~~--------------------------------------- 149 (210)
T d1h6ta2 112 KKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKI-TDI--------------------------------------- 149 (210)
T ss_dssp TTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCC-CCC---------------------------------------
T ss_pred cccccccccccc-cccc-ccccccccccccccccccc-ccc---------------------------------------
Confidence 777777777765 3433 3566677777777766632 111
Q ss_pred HHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccce
Q 044935 458 RRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRD 537 (683)
Q Consensus 458 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 537 (683)
..+..+++|+.+++++|.+.+ ...+..+++|+.|++++|.+.. + + .+..+++|++
T Consensus 150 --~~~~~l~~L~~l~l~~n~l~~-------------------i~~l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~ 204 (210)
T d1h6ta2 150 --TVLSRLTKLDTLSLEDNQISD-------------------IVPLAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDV 204 (210)
T ss_dssp --GGGGGCTTCSEEECCSSCCCC-------------------CGGGTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSE
T ss_pred --ccccccccccccccccccccc-------------------cccccCCCCCCEEECCCCCCCC--C-h-hhcCCCCCCE
Confidence 112345667777777776432 1236677888888888887765 5 3 4778888998
Q ss_pred EeecC
Q 044935 538 LYLSY 542 (683)
Q Consensus 538 L~l~~ 542 (683)
|+|++
T Consensus 205 L~Ls~ 209 (210)
T d1h6ta2 205 LELFS 209 (210)
T ss_dssp EEEEE
T ss_pred EEccC
Confidence 88864
No 20
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.43 E-value=4.9e-13 Score=122.82 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=110.9
Q ss_pred cCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcc
Q 044935 298 MRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCEL 377 (683)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L 377 (683)
+++++.|+++++.+.. ++ .+..+++|++|++++ +.+..++. ++.+++|++|++++|. +..+|. +.++
T Consensus 39 l~~l~~L~l~~~~i~~----l~-~l~~l~nL~~L~Ls~-----N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l~~l 105 (199)
T d2omxa2 39 LDQVTTLQADRLGIKS----ID-GVEYLNNLTQINFSN-----NQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANL 105 (199)
T ss_dssp HTTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred hcCCCEEECCCCCCCC----cc-ccccCCCcCcCcccc-----ccccCccc-ccCCcccccccccccc-cccccc-cccc
Confidence 7778888888887532 22 367788888888888 44455554 7788888888888887 777775 7888
Q ss_pred cCCcEEeccCccchhhcccccccccccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHh
Q 044935 378 YNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEA 457 (683)
Q Consensus 378 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~ 457 (683)
++|++|++++|. .... ..+..+++|+.|++++|. +..++
T Consensus 106 ~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------------------------------------- 144 (199)
T d2omxa2 106 TNLTGLTLFNNQ-ITDI-DPLKNLTNLNRLELSSNT-ISDIS-------------------------------------- 144 (199)
T ss_dssp TTCSEEECCSSC-CCCC-GGGTTCTTCSEEECCSSC-CCCCG--------------------------------------
T ss_pred cccccccccccc-cccc-cccchhhhhHHhhhhhhh-hcccc--------------------------------------
Confidence 888888888776 3333 356778888888887773 22221
Q ss_pred HHhccccCCCCCeEEEEeecCCCCCcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccce
Q 044935 458 RRAELEQKKNLLKLGLHFCHSRDGDEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRD 537 (683)
Q Consensus 458 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 537 (683)
.+..+++|+.|++.+|.+.+ ...++.+++|++|++++|.+.. + ..++.+++|+.
T Consensus 145 ---~l~~~~~L~~L~l~~n~l~~-------------------l~~l~~l~~L~~L~ls~N~i~~--i--~~l~~L~~L~~ 198 (199)
T d2omxa2 145 ---ALSGLTSLQQLNFSSNQVTD-------------------LKPLANLTTLERLDISSNKVSD--I--SVLAKLTNLES 198 (199)
T ss_dssp ---GGTTCTTCSEEECCSSCCCC-------------------CGGGTTCTTCCEEECCSSCCCC--C--GGGGGCTTCSE
T ss_pred ---cccccccccccccccccccC-------------------CccccCCCCCCEEECCCCCCCC--C--ccccCCCCCCc
Confidence 12344566777777776432 2246678889999999888766 4 24678888887
Q ss_pred E
Q 044935 538 L 538 (683)
Q Consensus 538 L 538 (683)
|
T Consensus 199 L 199 (199)
T d2omxa2 199 L 199 (199)
T ss_dssp E
T ss_pred C
Confidence 5
No 21
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.39 E-value=1.5e-12 Score=123.96 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=40.7
Q ss_pred ceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhcc-cccccccc
Q 044935 327 CLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELL-QGIGKLRK 403 (683)
Q Consensus 327 ~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~ 403 (683)
++++|++++ +.+..+|. .|.++++|++|++++|.....+| ..+.+++++++|.+..+..+...+ ..+.++++
T Consensus 30 ~l~~L~Ls~-----n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~ 104 (242)
T d1xwdc1 30 NAIELRFVL-----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 104 (242)
T ss_dssp CCSEEEEES-----CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred CCCEEECcC-----CcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccc
Confidence 455666655 44445543 35556666666666555233333 234455555555554433333333 33455555
Q ss_pred cceEecCCC
Q 044935 404 LMYLDNEGT 412 (683)
Q Consensus 404 L~~L~l~~~ 412 (683)
|++|++.++
T Consensus 105 L~~l~l~~~ 113 (242)
T d1xwdc1 105 LQYLLISNT 113 (242)
T ss_dssp CCEEEEESC
T ss_pred ccccccchh
Confidence 565555554
No 22
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.34 E-value=4.8e-13 Score=130.31 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=120.1
Q ss_pred CCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhh--cccccccc
Q 044935 324 KLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRE--LLQGIGKL 401 (683)
Q Consensus 324 ~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~l 401 (683)
....|++|++++|.++. ..++..+..+++|++|++++|......+..++++++|++|++++|..++. +..-...+
T Consensus 44 ~~~~L~~LdLs~~~i~~---~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~ 120 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120 (284)
T ss_dssp CCBCCCEEECTTCEECH---HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred cCCCCCEEECCCCccCH---HHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence 45678888888854332 22444467788888898888873345666788888899999988765643 22334567
Q ss_pred cccceEecCCCccccccccccCCCCCCCCccccccCccCCCeeEcCCCCCCChhHhHHhccccCCCCCeEEEEeecCCCC
Q 044935 402 RKLMYLDNEGTNSLRFLPVGIGELISLRNLGSLKKLNLLRECWICGRGGVSDAGEARRAELEQKKNLLKLGLHFCHSRDG 481 (683)
Q Consensus 402 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 481 (683)
++|++|++++|..+.... .........++|+.|++++|...
T Consensus 121 ~~L~~L~ls~c~~~~~~~-------------------------------------~~~~~~~~~~~L~~L~l~~~~~~-- 161 (284)
T d2astb2 121 SRLDELNLSWCFDFTEKH-------------------------------------VQVAVAHVSETITQLNLSGYRKN-- 161 (284)
T ss_dssp TTCCEEECCCCTTCCHHH-------------------------------------HHHHHHHSCTTCCEEECCSCGGG--
T ss_pred Hhcccccccccccccccc-------------------------------------chhhhcccccccchhhhcccccc--
Confidence 888888888874332100 00001112356777777765310
Q ss_pred CcccccCCCCchhHHHHHhhhcCCCCCccEEEEeeecCCCCccCcchHhhccccceEeecCCCCCCC--CCCCCCCCCcc
Q 044935 482 DEEQAGRRENEEDEAERLLEALGPPPNLKELRIHEYRGRRNVVPINWIMSLTNLRDLYLSYCRNCEH--LPPLGKLPSLE 559 (683)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~ 559 (683)
. ....+......+++|++|++++|...++.. +..+..+++|++|++++|....+ +..++.+|+|+
T Consensus 162 ---------i---~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~ 228 (284)
T d2astb2 162 ---------L---QKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228 (284)
T ss_dssp ---------S---CHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred ---------c---ccccccccccccccccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence 0 112233334457889999998876655434 56677889999999999864432 22377788888
Q ss_pred eEEecCC
Q 044935 560 DLHILGM 566 (683)
Q Consensus 560 ~L~L~~~ 566 (683)
.|++.+|
T Consensus 229 ~L~l~~~ 235 (284)
T d2astb2 229 TLQVFGI 235 (284)
T ss_dssp EEECTTS
T ss_pred EEeeeCC
Confidence 8888776
No 23
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.33 E-value=1.4e-14 Score=152.48 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=74.2
Q ss_pred ceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCcccc-ccchhhhcCCCceeEEEecccCCcccCccccccccc
Q 044935 273 KVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSS-KVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIK 351 (683)
Q Consensus 273 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~ 351 (683)
++..+.++++.+.. ..+..-++.++++++|++.+|.++... ..+...+..+++|+.|+|++|.+++..+..+...+.
T Consensus 3 ~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 3 DIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 56778887777764 222333455888888888888753211 234556677888888888886654433344444443
Q ss_pred C-CCCCcEEeecCCCCccc-----cchHHhcccCCcEEeccCcc
Q 044935 352 N-LLHLKYLSLFGESEIKR-----LPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 352 ~-l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~L~~~~ 389 (683)
. ..+|++|++++|. ++. ++..+..+++|++|++++|.
T Consensus 81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred cCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence 3 3468888888887 543 45556778888888888876
No 24
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.25 E-value=1.2e-11 Score=117.38 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=84.4
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~ 354 (683)
.+...+.....+|..+ .+++++|++++|.+. ...+..|.++++|++|++++|.+. ..++ ..+..++
T Consensus 12 ~i~c~~~~l~~iP~~l------~~~l~~L~Ls~n~i~---~l~~~~f~~l~~L~~L~ls~n~~~----~~i~~~~f~~l~ 78 (242)
T d1xwdc1 12 VFLCQESKVTEIPSDL------PRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVL----EVIEADVFSNLP 78 (242)
T ss_dssp EEEEESCSCSSCCSCS------CSCCSEEEEESCCCC---EECTTTTTTCTTCCEEEEESCTTC----CEECSSSEESCT
T ss_pred EEEEeCCCCCCcCCCC------CCCCCEEECcCCcCC---ccChhHhhccchhhhhhhcccccc----ceeecccccccc
Confidence 4455556667777665 357899999999863 334456899999999999994322 2233 4578899
Q ss_pred CCcEEeecCCCCccccc-hHHhcccCCcEEeccCccchhhccc--ccccccccceEecCCC
Q 044935 355 HLKYLSLFGESEIKRLP-EVLCELYNLERLDVRFCVNLRELLQ--GIGKLRKLMYLDNEGT 412 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~ 412 (683)
+++++.+..+..+..++ ..+.++++|++|++++|. +...+. .+..++.+..+...++
T Consensus 79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~ 138 (242)
T d1xwdc1 79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNI 138 (242)
T ss_dssp TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCT
T ss_pred ccccccccccccccccccccccccccccccccchhh-hccccccccccccccccccccccc
Confidence 99999987654466555 557899999999999986 555443 2234445554444443
No 25
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.24 E-value=1.3e-11 Score=102.96 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=80.9
Q ss_pred cEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchHHhcccCCc
Q 044935 302 RSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLE 381 (683)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 381 (683)
|+|++++|.+. .++. +.++++|++|++++ +.++.+|..++.+++|++|++++|. ++.+|. +.++++|+
T Consensus 1 R~L~Ls~n~l~----~l~~-l~~l~~L~~L~ls~-----N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~ 68 (124)
T d1dcea3 1 RVLHLAHKDLT----VLCH-LEQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQ 68 (124)
T ss_dssp SEEECTTSCCS----SCCC-GGGGTTCCEEECCS-----SCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCC
T ss_pred CEEEcCCCCCC----CCcc-cccCCCCCEEECCC-----CccCcchhhhhhhhccccccccccc-ccccCc-cccccccC
Confidence 67888888864 2343 77888999999988 6677888888899999999999988 888876 88999999
Q ss_pred EEeccCccchhhcc--cccccccccceEecCCCc
Q 044935 382 RLDVRFCVNLRELL--QGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 382 ~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 413 (683)
+|++++|. +..+| ..+..+++|++|++++|.
T Consensus 69 ~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 69 ELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp EEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred eEECCCCc-cCCCCCchhhcCCCCCCEEECCCCc
Confidence 99999887 66665 357888899999998884
No 26
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.22 E-value=2.9e-13 Score=142.23 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=67.1
Q ss_pred CccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccc-hHHh---
Q 044935 300 RLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLP-EVLC--- 375 (683)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i~--- 375 (683)
+|+.|+++++.++. ..+...+..+++|++|+|++|++++..+..++..+..+++|++|+|++|. ++..+ ..+.
T Consensus 3 ~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l 79 (460)
T d1z7xw1 3 DIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 79 (460)
T ss_dssp EEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred CCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence 46777777777532 22334455667777777777766655556666666777777777777776 53211 1122
Q ss_pred --cccCCcEEeccCccchh-----hcccccccccccceEecCCCc
Q 044935 376 --ELYNLERLDVRFCVNLR-----ELLQGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 376 --~L~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~l~~~~ 413 (683)
...+|++|+|++|. ++ .++..+..+++|++|++++|.
T Consensus 80 ~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 80 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred hcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence 12467777777775 32 244556667777777777663
No 27
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.20 E-value=1.1e-11 Score=108.74 Aligned_cols=105 Identities=26% Similarity=0.220 Sum_probs=80.6
Q ss_pred ccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchH-Hh
Q 044935 297 RMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEV-LC 375 (683)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~ 375 (683)
++.++|.|++++|.+.. ++..+..+++|++|+|++ +.+.+++ .+..+++|++|++++|. +..+|.. +.
T Consensus 16 n~~~lr~L~L~~n~I~~----i~~~~~~l~~L~~L~Ls~-----N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~ 84 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPV----IENLGATLDQFDAIDFSD-----NEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQ 84 (162)
T ss_dssp CTTSCEEEECTTSCCCS----CCCGGGGTTCCSEEECCS-----SCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred CcCcCcEEECCCCCCCc----cCccccccccCCEEECCC-----CCCCccC-CcccCcchhhhhccccc-ccCCCccccc
Confidence 36778889999888643 345567788899999988 5556664 47888899999999988 7777754 46
Q ss_pred cccCCcEEeccCccchhhccc--ccccccccceEecCCCc
Q 044935 376 ELYNLERLDVRFCVNLRELLQ--GIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 376 ~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~ 413 (683)
.+++|++|++++|. +..++. .+..+++|++|++++|.
T Consensus 85 ~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 85 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 123 (162)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred cccccccceecccc-ccccccccccccccccchhhcCCCc
Confidence 78899999998887 665553 56788889999988884
No 28
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.14 E-value=3.8e-11 Score=105.30 Aligned_cols=123 Identities=20% Similarity=0.107 Sum_probs=100.9
Q ss_pred CceEEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccccc-c
Q 044935 272 KKVLHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTN-I 350 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~-i 350 (683)
..++.+.+.++.+..++.... .+++|++|++++|.+.. ++ .|..+++|++|++++ +.+..+|.. +
T Consensus 18 ~~lr~L~L~~n~I~~i~~~~~----~l~~L~~L~Ls~N~i~~----l~-~~~~l~~L~~L~ls~-----N~i~~l~~~~~ 83 (162)
T d1a9na_ 18 VRDRELDLRGYKIPVIENLGA----TLDQFDAIDFSDNEIRK----LD-GFPLLRRLKTLLVNN-----NRICRIGEGLD 83 (162)
T ss_dssp TSCEEEECTTSCCCSCCCGGG----GTTCCSEEECCSSCCCE----EC-CCCCCSSCCEEECCS-----SCCCEECSCHH
T ss_pred CcCcEEECCCCCCCccCcccc----ccccCCEEECCCCCCCc----cC-CcccCcchhhhhccc-----ccccCCCcccc
Confidence 478999999999998865433 38999999999998743 33 378899999999999 666778765 4
Q ss_pred cCCCCCcEEeecCCCCccccch--HHhcccCCcEEeccCccchhhccc----ccccccccceEecC
Q 044935 351 KNLLHLKYLSLFGESEIKRLPE--VLCELYNLERLDVRFCVNLRELLQ----GIGKLRKLMYLDNE 410 (683)
Q Consensus 351 ~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~ 410 (683)
..+++|++|++++|. +..++. .+..+++|++|++++|. +...|. .+..+++|++||..
T Consensus 84 ~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 84 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence 679999999999998 887764 57889999999999997 776664 46889999999743
No 29
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.12 E-value=9.5e-11 Score=97.50 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=90.0
Q ss_pred EEEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCC
Q 044935 275 LHLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLL 354 (683)
Q Consensus 275 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~ 354 (683)
|.+.+.++.+..++. + .++++|+.|++++|.+. .+|..|..+++|++|++++ +.+..+| .++.++
T Consensus 1 R~L~Ls~n~l~~l~~-l----~~l~~L~~L~ls~N~l~----~lp~~~~~l~~L~~L~l~~-----N~i~~l~-~~~~l~ 65 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-L----EQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASD-----NALENVD-GVANLP 65 (124)
T ss_dssp SEEECTTSCCSSCCC-G----GGGTTCCEEECCSSCCC----CCCGGGGGCTTCCEEECCS-----SCCCCCG-GGTTCS
T ss_pred CEEEcCCCCCCCCcc-c----ccCCCCCEEECCCCccC----cchhhhhhhhccccccccc-----ccccccC-cccccc
Confidence 356677787776653 3 44999999999999863 3666789999999999999 6666776 489999
Q ss_pred CCcEEeecCCCCccccc--hHHhcccCCcEEeccCccchhhcc---ccc-ccccccceE
Q 044935 355 HLKYLSLFGESEIKRLP--EVLCELYNLERLDVRFCVNLRELL---QGI-GKLRKLMYL 407 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp---~~i-~~l~~L~~L 407 (683)
+|++|++++|. +..+| ..+..+++|++|++++|. +...+ ..+ ..+++|+.|
T Consensus 66 ~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 66 RLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred ccCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence 99999999998 88776 458899999999999987 54443 222 445666655
No 30
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.03 E-value=2.2e-10 Score=104.01 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=92.4
Q ss_pred EEEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccc-cccccCCC
Q 044935 276 HLMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEI-PTNIKNLL 354 (683)
Q Consensus 276 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-p~~i~~l~ 354 (683)
.+..+++....+|..+ .++++.|++++|.+.. ...+..|.++++|+.|+|++| .+..+ +..+..++
T Consensus 12 ~v~Cs~~~L~~iP~~l------p~~l~~L~Ls~N~i~~--~~~~~~f~~l~~L~~L~L~~N-----~i~~~~~~~~~~~~ 78 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDI------PLHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRN-----QLTGIEPNAFEGAS 78 (192)
T ss_dssp EEECTTSCCSSCCSCC------CTTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSS-----CCCCBCTTTTTTCT
T ss_pred EEEEeCCCcCccCCCC------CCCCCEEEeCCCCCcc--cccccccCCCceEeeeecccc-----cccccccccccccc
Confidence 3444556666777665 4678899999998632 223556788999999999884 44444 46678889
Q ss_pred CCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhccc-ccccccccceEecCCCc
Q 044935 355 HLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQ-GIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 355 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 413 (683)
+|++|++++|. +..+|+ .|.++++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 79 ~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 79 HIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccceeeecccc-ccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccc
Confidence 99999999998 777764 57889999999999887 777765 46788999999998874
No 31
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.01 E-value=1.8e-11 Score=111.58 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=30.8
Q ss_pred cccccccccCCCCCcEEeecCCCCccccchHHhcccCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 343 IKEIPTNIKNLLHLKYLSLFGESEIKRLPEVLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 343 ~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
++.+|.++..+++|++|+|++|. ++.++. +..+++|++|++++|. +..+|.....+++|++|++++|
T Consensus 37 i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N 103 (198)
T d1m9la_ 37 IEKMDATLSTLKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCCCHHHHHHTTTCCEEECSEEE-ESCCCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE
T ss_pred hhhhhhHHhcccccceeECcccC-CCCccc-ccCCccccChhhcccc-cccccccccccccccccccccc
Confidence 34444444445555555555444 444442 4445555555555443 4444433333344444544443
No 32
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.93 E-value=4.6e-11 Score=119.84 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=17.3
Q ss_pred hccCCccEEEEeCCCCccc-cccchhhhcCCCceeEEEecc
Q 044935 296 KRMRRLRSLSVEGGEYSWS-SKVLPQLFDKLTCLRAITLET 335 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~ 335 (683)
.+...++.|++++|.+... ...+...+...++|+.|++++
T Consensus 28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~ 68 (344)
T d2ca6a1 28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68 (344)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCS
T ss_pred hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCC
Confidence 3355555555555543110 011223344445555555554
No 33
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=98.91 E-value=2.9e-11 Score=110.14 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=87.7
Q ss_pred hhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccchH
Q 044935 294 NVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPEV 373 (683)
Q Consensus 294 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~ 373 (683)
.+..+++|+.|++++|.+.. ++ .+..+++|++|+|++ +.+..+|..+..+++|++|++++|. +..++.
T Consensus 43 sl~~L~~L~~L~Ls~n~I~~----i~-~l~~l~~L~~L~Ls~-----N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~- 110 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIEK----IS-SLSGMENLRILSLGR-----NLIKKIENLDAVADTLEELWISYNQ-IASLSG- 110 (198)
T ss_dssp HHHHTTTCCEEECSEEEESC----CC-CHHHHTTCCEEECCE-----EEECSCSSHHHHHHHCCEEECSEEE-CCCHHH-
T ss_pred HHhcccccceeECcccCCCC----cc-cccCCccccChhhcc-----ccccccccccccccccccccccccc-cccccc-
Confidence 34459999999999998642 33 378899999999999 6667777666667789999999998 888865
Q ss_pred HhcccCCcEEeccCccchhhcc--cccccccccceEecCCCcc
Q 044935 374 LCELYNLERLDVRFCVNLRELL--QGIGKLRKLMYLDNEGTNS 414 (683)
Q Consensus 374 i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~ 414 (683)
+..+++|++|++++|. +..++ ..+..+++|++|++++|..
T Consensus 111 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred ccccccccccccccch-hccccccccccCCCccceeecCCCcc
Confidence 8899999999999887 66665 3578899999999999854
No 34
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.88 E-value=1.1e-09 Score=99.31 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=97.0
Q ss_pred CceEEEEEEecCCCC-cccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-c
Q 044935 272 KKVLHLMLTIDEGTS-VPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-N 349 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~ 349 (683)
..++++.++++.+.. .+... |.++++|+.|++++|.+. ...+..|..++.|+.|+|++ +.+..+|. .
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~---f~~l~~L~~L~L~~N~i~---~~~~~~~~~~~~L~~L~Ls~-----N~l~~l~~~~ 97 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGL---FGRLPHLVKLELKRNQLT---GIEPNAFEGASHIQELQLGE-----NKIKEISNKM 97 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCS---GGGCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCS-----CCCCEECSSS
T ss_pred CCCCEEEeCCCCCcccccccc---cCCCceEeeeeccccccc---cccccccccccccceeeecc-----ccccccCHHH
Confidence 578999999999875 33333 345999999999999854 55677899999999999999 66677764 5
Q ss_pred ccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcccccccccccceEecCCC
Q 044935 350 IKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 350 i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 412 (683)
|.++++|++|+|++|. +..+|+ .+..+++|++|+|++|. +...+....-...++.+.+..+
T Consensus 98 F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~-~~~~~~~~~~~~~l~~~~l~~~ 159 (192)
T d1w8aa_ 98 FLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP-FNCNCHLAWFAEWLRKKSLNGG 159 (192)
T ss_dssp STTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC-BCCSGGGHHHHHHHHHHCCSGG
T ss_pred HhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccc-cccccchHHHhhhhhhhcccCC
Confidence 8999999999999999 888765 47899999999999987 4332222222234555555544
No 35
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.81 E-value=1.1e-09 Score=109.42 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=95.8
Q ss_pred CceEEEEEEecCCCC-cccccchhhhccCCccEEEEeCCCCcccccc-------chhhhcCCCceeEEEecccCCcccCc
Q 044935 272 KKVLHLMLTIDEGTS-VPISIWNNVKRMRRLRSLSVEGGEYSWSSKV-------LPQLFDKLTCLRAITLETYGWDYNPI 343 (683)
Q Consensus 272 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~l~~L~~L~L~~~~~~~~~~ 343 (683)
..++.+.+.++.+.. -...+...+...++|+.+.+.++........ +...+...++|+.|+|++|.++...+
T Consensus 31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 110 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 110 (344)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence 467778887765432 1223334456689999999988754322221 33446778899999999988876667
Q ss_pred ccccccccCCCCCcEEeecCCCCccc-----cch---------HHhcccCCcEEeccCccc----hhhcccccccccccc
Q 044935 344 KEIPTNIKNLLHLKYLSLFGESEIKR-----LPE---------VLCELYNLERLDVRFCVN----LRELLQGIGKLRKLM 405 (683)
Q Consensus 344 ~~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~---------~i~~L~~L~~L~L~~~~~----l~~lp~~i~~l~~L~ 405 (683)
..+...+..+++|+.|++++|. +.. +.. .....+.|+.|+++++.. ...+...+...++|+
T Consensus 111 ~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~ 189 (344)
T d2ca6a1 111 EPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred cchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence 7787778888999999999987 432 111 123457788999887752 123444566778889
Q ss_pred eEecCCCc
Q 044935 406 YLDNEGTN 413 (683)
Q Consensus 406 ~L~l~~~~ 413 (683)
.|++++|.
T Consensus 190 ~L~L~~n~ 197 (344)
T d2ca6a1 190 TVKMVQNG 197 (344)
T ss_dssp EEECCSSC
T ss_pred cccccccc
Confidence 99888874
No 36
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.68 E-value=2.5e-08 Score=86.30 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=62.5
Q ss_pred ccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCCCcEEeecCCCCccccc-hHHhccc
Q 044935 301 LRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLHLKYLSLFGESEIKRLP-EVLCELY 378 (683)
Q Consensus 301 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~ 378 (683)
...++..++.. ...|..+..+++|+.|+++++ +.++.++ ..|.++++|+.|++++|. +..++ ..+..++
T Consensus 10 ~~~l~c~~~~~----~~~p~~l~~l~~l~~L~l~~n----~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~ 80 (156)
T d2ifga3 10 SSGLRCTRDGA----LDSLHHLPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTP 80 (156)
T ss_dssp SSCEECCSSCC----CTTTTTSCSCSCCSEEECCSC----SSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCS
T ss_pred CCeEEecCCCC----ccCcccccCccccCeeecCCC----ccccccCchhhccccccCcceeeccc-cCCcccccccccc
Confidence 34455555543 123444556667777777552 2355555 346667777777777776 66654 4466777
Q ss_pred CCcEEeccCccchhhcccccccccccceEecCCCc
Q 044935 379 NLERLDVRFCVNLRELLQGIGKLRKLMYLDNEGTN 413 (683)
Q Consensus 379 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 413 (683)
+|++|+|++|. ++.+|..+....+|++|++++|.
T Consensus 81 ~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 81 RLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cccceeccCCC-CcccChhhhccccccccccCCCc
Confidence 77777777766 66666665545567777777663
No 37
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.56 E-value=6.7e-08 Score=83.47 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=79.4
Q ss_pred EEEEecCCCCcccccchhhhccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCccccc-ccccCCCC
Q 044935 277 LMLTIDEGTSVPISIWNNVKRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIP-TNIKNLLH 355 (683)
Q Consensus 277 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp-~~i~~l~~ 355 (683)
+...+......+..+.. +++|+.|++.++.. +....+..|.++++|+.|+|++ +.+..++ ..|..+++
T Consensus 13 l~c~~~~~~~~p~~l~~----l~~l~~L~l~~n~~--l~~i~~~~f~~l~~L~~L~Ls~-----N~l~~i~~~~f~~l~~ 81 (156)
T d2ifga3 13 LRCTRDGALDSLHHLPG----AENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVK-----SGLRFVAPDAFHFTPR 81 (156)
T ss_dssp EECCSSCCCTTTTTSCS----CSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCS-----SCCCEECTTGGGSCSC
T ss_pred EEecCCCCccCcccccC----ccccCeeecCCCcc--ccccCchhhccccccCcceeec-----cccCCccccccccccc
Confidence 33445555555555544 89999999987641 2244466799999999999999 6667774 56899999
Q ss_pred CcEEeecCCCCccccchHHhcccCCcEEeccCcc
Q 044935 356 LKYLSLFGESEIKRLPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 356 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 389 (683)
|++|+|++|. ++.+|..+....+|++|+|++|.
T Consensus 82 L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 82 LSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeccCCC-CcccChhhhccccccccccCCCc
Confidence 9999999999 99999877777789999999987
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.73 E-value=3.7e-06 Score=72.75 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=56.9
Q ss_pred chhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccccch-HHhcccCCcEEeccCccchhhcc-
Q 044935 318 LPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKRLPE-VLCELYNLERLDVRFCVNLRELL- 395 (683)
Q Consensus 318 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp- 395 (683)
++..+..+++|++|+|++|.++ .+..++..+..+++|++|++++|. ++.+++ ...+..+|+.|++++|.......
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~--~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~ 133 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRD 133 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCC--CCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred hHHHHHhCCCCCEeeCCCcccc--CCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCccc
Confidence 3444567888888888885542 233345556778888888888888 777775 22344568888888876322211
Q ss_pred ------cccccccccceEe
Q 044935 396 ------QGIGKLRKLMYLD 408 (683)
Q Consensus 396 ------~~i~~l~~L~~L~ 408 (683)
..+..+++|+.||
T Consensus 134 ~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 134 QSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHHTTSTTCCEET
T ss_pred chhHHHHHHHHCCCCCEEC
Confidence 1245678888876
No 39
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.29 E-value=3.4e-05 Score=66.44 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=60.9
Q ss_pred hccCCccEEEEeCCCCccccccchhhhcCCCceeEEEecccCCcccCcccccc-cccCCCCCcEEeecCCCCccccc---
Q 044935 296 KRMRRLRSLSVEGGEYSWSSKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT-NIKNLLHLKYLSLFGESEIKRLP--- 371 (683)
Q Consensus 296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--- 371 (683)
.+++.|++|++++|.+..... ++..+..+++|+.|+|++ |.++.++. ......+|+.|++++|. +....
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~-~~~~~~~l~~L~~L~Ls~-----N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~ 134 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSG-----NELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQ 134 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSG-GGTHHHHSTTCCCCCCTT-----SCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSH
T ss_pred HhCCCCCEeeCCCccccCCch-hHHHHhhCCccccccccc-----CccccchhhhhhhccccceeecCCCC-cCcCcccc
Confidence 459999999999999764432 456678899999999999 55556654 22344579999999998 54322
Q ss_pred -----hHHhcccCCcEEe
Q 044935 372 -----EVLCELYNLERLD 384 (683)
Q Consensus 372 -----~~i~~L~~L~~L~ 384 (683)
..+..+++|++||
T Consensus 135 ~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 135 STYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHTTSTTCCEET
T ss_pred hhHHHHHHHHCCCCCEEC
Confidence 2356789999986
No 40
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.28 E-value=6.7e-05 Score=64.88 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=72.5
Q ss_pred ccCCccEEEEeCC-CCccc-cccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCccc-----
Q 044935 297 RMRRLRSLSVEGG-EYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKR----- 369 (683)
Q Consensus 297 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~----- 369 (683)
+.+.|+.|+++++ .+... ...+-..+...+.|+.|+|++|.+.+.....+...+...+.|++|+|++|. +..
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~ 91 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 91 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence 3677888888764 33210 011333466677788888888777655566666667777888888888887 543
Q ss_pred cchHHhcccCCcEEeccCccc--h-----hhcccccccccccceEecCCC
Q 044935 370 LPEVLCELYNLERLDVRFCVN--L-----RELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 370 lp~~i~~L~~L~~L~L~~~~~--l-----~~lp~~i~~l~~L~~L~l~~~ 412 (683)
+-..+..-+.|++|++++|.. + ..+...+..-++|+.|+++.+
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 233455667788888876631 1 223444555677777777654
No 41
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=96.90 E-value=0.00028 Score=60.80 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=85.8
Q ss_pred CceEEEEEEec-CCCC-cccccchhhhccCCccEEEEeCCCCccc-cccchhhhcCCCceeEEEecccCCcccCcccccc
Q 044935 272 KKVLHLMLTID-EGTS-VPISIWNNVKRMRRLRSLSVEGGEYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPT 348 (683)
Q Consensus 272 ~~~~~l~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~ 348 (683)
+.++.+.+.+. .+.. ....+...+...+.|++|++++|.+... ...+...+...+.|+.|+|++|.++...+..+-.
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 57888888753 2332 2223455667789999999999986421 1334556777899999999998887766777778
Q ss_pred cccCCCCCcEEeecCCCCccc--------cchHHhcccCCcEEeccCcc
Q 044935 349 NIKNLLHLKYLSLFGESEIKR--------LPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 349 ~i~~l~~L~~L~L~~~~~~~~--------lp~~i~~L~~L~~L~L~~~~ 389 (683)
.+...+.|++|++++|. +.. +...+..-+.|+.|+++.+.
T Consensus 95 aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 88888999999999875 332 44556678999999998764
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=96.80 E-value=0.00038 Score=59.86 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=71.5
Q ss_pred hccCCccEEEEeCC-CCccc-cccchhhhcCCCceeEEEecccCCcccCcccccccccCCCCCcEEeecCCCCcc-----
Q 044935 296 KRMRRLRSLSVEGG-EYSWS-SKVLPQLFDKLTCLRAITLETYGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIK----- 368 (683)
Q Consensus 296 ~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~----- 368 (683)
.+.+.|+.|.++++ .++.. ...+-..+...++|+.|++++|.++......+...+...+.|+.+++++|. +.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~g~~ 92 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 92 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc-ccchhHH
Confidence 34677888888763 33110 111334456777888888888776655555566666777888888888776 43
Q ss_pred ccchHHhcccCCcEEeccCcc-ch-----hhcccccccccccceEecCCC
Q 044935 369 RLPEVLCELYNLERLDVRFCV-NL-----RELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 369 ~lp~~i~~L~~L~~L~L~~~~-~l-----~~lp~~i~~l~~L~~L~l~~~ 412 (683)
.+...+...++|+.++|+.+. .+ ..+...+...++|+.|++..+
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 233456667778776664332 12 234445566777888877665
No 43
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=96.05 E-value=0.0022 Score=54.87 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=68.0
Q ss_pred ccchhhhcCCCceeEEEecc-cCCcccCcccccccccCCCCCcEEeecCCCCccc-----cchHHhcccCCcEEeccCcc
Q 044935 316 KVLPQLFDKLTCLRAITLET-YGWDYNPIKEIPTNIKNLLHLKYLSLFGESEIKR-----LPEVLCELYNLERLDVRFCV 389 (683)
Q Consensus 316 ~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~L~~~~ 389 (683)
..+.....+.+.|+.|+|++ +.++...+..+-..+...++|+.|++++|. ++. +-..+...+.|+.+++++|.
T Consensus 7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 33455556788999999987 346555556677777888999999999997 542 33456778899999999886
Q ss_pred ch----hhcccccccccccceEecCCC
Q 044935 390 NL----RELLQGIGKLRKLMYLDNEGT 412 (683)
Q Consensus 390 ~l----~~lp~~i~~l~~L~~L~l~~~ 412 (683)
.. ..+...+...++|+.+++..+
T Consensus 86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~ 112 (166)
T d1io0a_ 86 ISGSGILALVEALQSNTSLIELRIDNQ 112 (166)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCC
T ss_pred ccchhHHHHHHHHHhCccccEEeeccC
Confidence 32 233455667778887766543
No 44
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=61.15 E-value=9.9 Score=32.14 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=35.2
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
+++-++|+||+..-+......+...+.+..++.++|+||++.+
T Consensus 107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (207)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChh
Confidence 5777999999976666677888888888888999998888754
No 45
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=57.01 E-value=9.7 Score=33.51 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=21.9
Q ss_pred HHHHHHHcCCchHHHHHHHhhhcCCCCH
Q 044935 114 GREIVGKCKGLPLAVKTIGSLLRSKNNE 141 (683)
Q Consensus 114 ~~~i~~~c~glPlal~~~~~~L~~~~~~ 141 (683)
+++|.+.++|.|..+..+|..+....+.
T Consensus 231 ~~~i~~~~~G~P~~L~~~~~~~~~~~~~ 258 (283)
T d2fnaa2 231 YEVVYEKIGGIPGWLTYFGFIYLDNKNL 258 (283)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccH
Confidence 4679999999999999998876544343
No 46
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=34.11 E-value=18 Score=31.15 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=31.0
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
+++.++|+|++..-+...-..+...+......+++|++|.+.
T Consensus 114 ~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~ 155 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 155 (239)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 466789999996554444456777777777888999998764
No 47
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.70 E-value=21 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=35.4
Q ss_pred CceEEEEEEcCCCCCccChHhHHHhhhCCCCCcEEEEEecCch
Q 044935 40 GEKFLLVLDDLWNKDYYKWEPFYNCLKNGLHGSKILITTRNET 82 (683)
Q Consensus 40 ~kr~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTTr~~~ 82 (683)
+++=++|+|++..-+...++.+...+.+-.+++.+|++|.+..
T Consensus 78 ~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~ 120 (198)
T d2gnoa2 78 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWH 120 (198)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChh
Confidence 5556899999977777788899999988888999999987653
No 48
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=24.44 E-value=52 Score=25.95 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHHHHcC-CceEEEEEEcCC---CCCccChHhHHHhhhCCCCCcEEEEEecCc
Q 044935 31 MQHIQECVE-GEKFLLVLDDLW---NKDYYKWEPFYNCLKNGLHGSKILITTRNE 81 (683)
Q Consensus 31 ~~~l~~~l~-~kr~LlvLDdv~---~~~~~~~~~l~~~~~~~~~gs~iivTTr~~ 81 (683)
-+..++.+. ++-=+||||.|- +-.....+.+...+.....+.-||+|=|+.
T Consensus 83 ~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~ 137 (157)
T d1g5ta_ 83 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 137 (157)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 333445554 445699999982 222346777888888888899999999975
No 49
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.00 E-value=39 Score=29.42 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHcCCceEEEEEEcCCCCCccCh-HhHHHhhhCC-CCCcEEEEEecCchhhhcc
Q 044935 34 IQECVEGEKFLLVLDDLWNKDYYKW-EPFYNCLKNG-LHGSKILITTRNETTAHNM 87 (683)
Q Consensus 34 l~~~l~~kr~LlvLDdv~~~~~~~~-~~l~~~~~~~-~~gs~iivTTr~~~v~~~~ 87 (683)
+.+.+..+.-+++||++...-...| ..+...+... ..|.-|||||.+.+++..+
T Consensus 218 ~~~~l~~~~~llllDEp~~~Ld~~~~~~l~~~l~~~~~~~~qviv~TH~~~~~~~~ 273 (292)
T g1f2t.1 218 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 273 (292)
T ss_dssp HHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred HhhhhcCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeecHHHHHhC
Confidence 3445556666899999943322223 2233344332 2356899999999887654
Done!