BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044936
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/464 (37%), Positives = 253/464 (54%), Gaps = 27/464 (5%)
Query: 1 MLTLAELFSHAGFRVTFVNTEQYHDRLLGNTDVTGFYKRFPNFRFTSIPDGLPP------ 54
+ LA+L GF +TFVNTE H RLL + F F +F F SIPDGL P
Sbjct: 25 LFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF-DGFTDFNFESIPDGLTPMEGDGD 83
Query: 55 ---DNPRFGIYIKDWFCSDKPVSKLAFRRLLMTPGRLPTCIISDSIMSFTIDVAEELNIP 111
D P ++ F KP +L R T TC++SD MSFTI AEE +P
Sbjct: 84 VSQDVPTLCQSVRKNFL--KPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELP 141
Query: 112 IITFRPYSAHCSWSDFHFSKLAEEGELPVTNEDF------DKPVTCIPGLENIFRNRDLP 165
+ + SA + HF E G +P +E + + V IPGL+N FR +D+
Sbjct: 142 NVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKN-FRLKDIV 200
Query: 166 SICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTVGPLHA 225
R P+D +L+ FI + + +++NTFNE+E +I+ L S + IY +GPL +
Sbjct: 201 DFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLPS 260
Query: 226 LLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSGTVLYVSFGSFIKLGREQILE 285
LLK Q +S +SN L KED C+ WL+S+ G+V+YV+FGS + EQ+LE
Sbjct: 261 LLKQTPQIHQLDSL--DSN---LWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLE 315
Query: 286 FWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELDQGTKERGCIVSWAPQEEVLAHQAIG 345
F G+ N K FLW+IR DL+ G G E +RG I SW PQ++VL H +IG
Sbjct: 316 FAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIG 373
Query: 346 GFLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEIWKIGLDMKDTCDRSTIENLV 405
GFLTH GWNST ES+ AGVPM+CWP DQ + R + W+IG+++ R + L+
Sbjct: 374 GFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLI 433
Query: 406 RDLM-DNKRDEIMESTVKIAKMARDAVKEGGSSYRNLEKLIEDI 448
+++ +K ++ + +++ K A + + GG SY NL K+I+D+
Sbjct: 434 NEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 186/378 (49%), Gaps = 47/378 (12%)
Query: 86 GRLPTCIISDSIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAEEGELPVTNEDF 145
GRLPT ++ D + DVA E ++P F P +A+ H KL E + +
Sbjct: 108 GRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET--VSCEFREL 165
Query: 146 DKPVT---CIPGLENIFRNRDLPSICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEI 202
+P+ C+P +D +D D + + +T +++NTF E+
Sbjct: 166 TEPLMLPGCVP-----VAGKDFLDPAQDR--KDDAYKWLLHNTKRYKEAEGILVNTFFEL 218
Query: 203 EGPIISKL---GSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWL 259
E I L G +Y VGPL + K ++ E+ C+ WL
Sbjct: 219 EPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ----------------TEESECLKWL 262
Query: 260 DSQPSGTVLYVSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRS-------DLIDGEPGV 312
D+QP G+VLYVSFGS L EQ+ E G+ +S +RFLWVIRS D
Sbjct: 263 DNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQT 322
Query: 313 GPV---PVELDQGTKERGCIVS-WAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMIC 368
P+ P + TK+RG ++ WAPQ +VLAH + GGFLTH GWNSTLES+V+G+P+I
Sbjct: 323 DPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIA 382
Query: 369 WPQIGDQQVNSRCVSEIWKIGLDMKDTCD----RSTIENLVRDLMDNKRDEIMESTVK-I 423
WP +Q++N+ +SE + L + D R + +V+ LM+ + + + + +K +
Sbjct: 383 WPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
Query: 424 AKMARDAVKEGGSSYRNL 441
+ A +K+ G+S + L
Sbjct: 443 KEAACRVLKDDGTSTKAL 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 200/427 (46%), Gaps = 51/427 (11%)
Query: 41 PNFRFTSIPDGLPP-----DNPRFGIYIKDWFCSDKPVSKLAFRRLLMTPGRLPTCIISD 95
P + +P+ PP +P F YI + S P K + +L ++ D
Sbjct: 67 PQIQLIDLPEVEPPPQELLKSPEF--YILTFLESLIPHVKATIKTILSNK---VVGLVLD 121
Query: 96 SIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAEEGELPVTNEDFDKPVTCIPGL 155
IDV E IP F +++ + S + E + D D + IPG+
Sbjct: 122 FFCVSMIDVGNEFGIPSYLF--LTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI 179
Query: 156 ENIFRNRDLPSIC--RDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKL--- 210
N + LP C +DGG + + T +++NTF+++E I L
Sbjct: 180 SNQVPSNVLPDACFNKDGG-----YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 211 GSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSGTVLYV 270
++ IY VGPL L + N + + + WLD QP +V+++
Sbjct: 235 DEKIPPIYAVGPLLDL-------------KGQPNPKLDQAQHDLILKWLDEQPDKSVVFL 281
Query: 271 SFGSF-IKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELDQGTKERGCI 329
FGS + G QI E G+ +SG RFLW + E V P + +G I
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSA-----EKKVFPEGFLEWMELEGKGMI 336
Query: 330 VSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEIWKIG 389
WAPQ EVLAH+AIGGF++H GWNS LESM GVP++ WP +QQ+N+ + + W +G
Sbjct: 337 CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Query: 390 LDMK-------DTCDRSTIENLVRDLMDNKRDEIMESTVK-IAKMARDAVKEGGSSYRNL 441
L ++ D IE ++DLMD +D I+ V+ + +M+R+AV +GGSS ++
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 442 EKLIEDI 448
KLI+DI
Sbjct: 455 GKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 200/427 (46%), Gaps = 51/427 (11%)
Query: 41 PNFRFTSIPDGLPP-----DNPRFGIYIKDWFCSDKPVSKLAFRRLLMTPGRLPTCIISD 95
P + +P+ PP +P F YI + S P K + +L ++ D
Sbjct: 67 PQIQLIDLPEVEPPPQELLKSPEF--YILTFLESLIPHVKATIKTILSNK---VVGLVLD 121
Query: 96 SIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAEEGELPVTNEDFDKPVTCIPGL 155
IDV E IP F +++ + S + E + D D + IPG+
Sbjct: 122 FFCVSMIDVGNEFGIPSYLF--LTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI 179
Query: 156 ENIFRNRDLPSIC--RDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKL--- 210
N + LP C +DGG + + T +++NTF+++E I L
Sbjct: 180 SNQVPSNVLPDACFNKDGG-----YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 211 GSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSGTVLYV 270
++ IY VGPL L + N + + + WLD QP +V+++
Sbjct: 235 DEKIPPIYAVGPLLDL-------------KGQPNPKLDQAQHDLILKWLDEQPDKSVVFL 281
Query: 271 SFGSF-IKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELDQGTKERGCI 329
FGS + G QI E G+ +SG RFLW + E V P + +G I
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSA-----EKKVFPEGFLEWMELEGKGMI 336
Query: 330 VSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEIWKIG 389
WAPQ EVLAH+AIGGF++H GWNS LESM GVP++ WP +QQ+N+ + + W +G
Sbjct: 337 CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Query: 390 LDMK-------DTCDRSTIENLVRDLMDNKRDEIMESTVK-IAKMARDAVKEGGSSYRNL 441
L ++ D IE ++DLMD +D I+ V+ + +M+R+AV +GGSS ++
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 442 EKLIEDI 448
KLI+DI
Sbjct: 455 GKLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 201/425 (47%), Gaps = 50/425 (11%)
Query: 40 FPNFRFTSIPDGLPPD-----NPRFGIYIKDWFCSDKPVSKLAFRRLLMTPGRLPTCIIS 94
PN ++ ++ DGLP NPR I++ + + + K + G+ TC+++
Sbjct: 66 LPNIKYYNVHDGLPKGYVSSGNPREPIFL--FIKAMQENFKHVIDEAVAETGKNITCLVT 123
Query: 95 DSIMSFTIDVAEELN---IPIITFRPYS--AHCSWSDFHFSKLAEEGELPVTNEDFD-KP 148
D+ F D+AEE++ +P+ T P+S H ++D K + E D K
Sbjct: 124 DAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV-YTDLIREKTG-------SKEVHDVKS 175
Query: 149 VTCIPGLENIFRNRDLP-SICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPII 207
+ +PG + + DLP + +D D P + R +A+ IN+F I I
Sbjct: 176 IDVLPGFPEL-KASDLPEGVIKD--IDVPFATMLHKMGLELPRANAVAINSFATIHPLIE 232
Query: 208 SKLGSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSGTV 267
++L S+ + VGP + R D + C+ WLD + +V
Sbjct: 233 NELNSKFKLLLNVGPFNLTTPQRKVSD-----------------EHGCLEWLDQHENSSV 275
Query: 268 LYVSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELDQGTKERG 327
+Y+SFGS + ++ + G F+W R D + +P + TK +G
Sbjct: 276 VYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKE------KLPKGFLERTKTKG 329
Query: 328 CIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEIWK 387
IV+WAPQ E+L H ++G FLTHSGWNS LE +V GVPMI P GDQ +N+ + +
Sbjct: 330 KIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLE 389
Query: 388 IGLDMKD-TCDRSTIENLVRDLMDNKRDEIM-ESTVKIAKMARDAVKEGGSSYRNLEKLI 445
IG+ + + + +I+ + M +++ IM + VK+ + A AV++ G+S + LI
Sbjct: 390 IGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
Query: 446 EDIRS 450
+ + S
Sbjct: 450 QIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 172/363 (47%), Gaps = 26/363 (7%)
Query: 86 GRLPTCIISDSIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAEEGELPVTNEDF 145
GR +C+++D+ + F D+A E+ + + F + + + ++ E+ +
Sbjct: 110 GRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGRE 169
Query: 146 DKPVTCIPGLENIFRNRDLPSICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGP 205
D+ + IPG+ + R RDL G + + R + +A+ IN+F E++
Sbjct: 170 DELLNFIPGMSKV-RFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDS 228
Query: 206 IISKLGSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSG 265
+ + L S+L +GP + + + PP N C+ WL +
Sbjct: 229 LTNDLKSKLKTYLNIGPFNLI-----------TPPPVVPNTT------GCLQWLKERKPT 271
Query: 266 TVLYVSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELDQGTKE 325
+V+Y+SFG+ +++ + S F+W +R + +P + T+
Sbjct: 272 SVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRG 325
Query: 326 RGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEI 385
G +V WAPQ EVLAH+A+G F+TH GWNS ES+ GVP+IC P GDQ++N R V ++
Sbjct: 326 YGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDV 385
Query: 386 WKIGLDMKDTC-DRSTIENLVRDLMDNKRDEIMESTVKIAKMARD-AVKEGGSSYRNLEK 443
+IG+ ++ +S + + ++ ++ + + ++ + D AV GSS N
Sbjct: 386 LEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFIT 445
Query: 444 LIE 446
L++
Sbjct: 446 LVD 448
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 287 WHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELDQGTKERGCIVSWAPQEEVLAHQAIGG 346
WH +++ G+ +V +DL G P VE+ Q W PQ ++L +
Sbjct: 285 WHVVLSVGR---FVDPADL-----GEVPPNVEVHQ----------WVPQLDILTKAS--A 324
Query: 347 FLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEIWKIGLDMKDTCDRSTIENL 404
F+TH+G ST+E++ VPM+ PQI +Q +N+ + E +GL D+ T E L
Sbjct: 325 FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE---LGLGRHIPRDQVTAEKL 379
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 329 IVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGDQQVN 378
+ W PQ ++L H F+TH G N E++ G+P + P DQ N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|1IKO|P Chain P, Crystal Structure Of The Murine Ephrin-B2 Ectodomain
Length = 178
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 9 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 68
Query: 405 VRDLMDNKR-DEIMESTVKIAKMA 427
L++ R D+ ++ T+K + +
Sbjct: 69 NTPLLNCARPDQDVKFTIKFQEFS 92
>pdb|2HLE|B Chain B, Structural And Biophysical Characterization Of The
Ephb4-ephrinb2 Protein Protein Interaction And Receptor
Specificity
Length = 138
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMDNKR-DEIMESTVKIAKMA 427
L++ R D+ ++ T+K + +
Sbjct: 68 NTPLLNCARPDQDVKFTIKFQEFS 91
>pdb|2VSM|B Chain B, Nipah Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 140
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMD-NKRDEIMESTVKIAKMA 427
L++ K D+ ++ T+K + +
Sbjct: 68 NTPLLNCAKPDQDIKFTIKFQEFS 91
>pdb|2I85|A Chain A, Nmr Solution Structure Of Human Ephrinb2 Ectodomain
Length = 142
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 11 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 70
Query: 405 VRDLMD-NKRDEIMESTVKIAKMA 427
L++ K D+ ++ T+K + +
Sbjct: 71 NTPLLNCAKPDQDIKFTIKFQEFS 94
>pdb|3GXU|B Chain B, Crystal Structure Of Eph Receptor And Ephrin Complex
Length = 143
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 9 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 68
Query: 405 VRDLMD-NKRDEIMESTVKIAKMA 427
L++ K D+ ++ T+K + +
Sbjct: 69 NTPLLNCAKPDQDIKFTIKFQEFS 92
>pdb|2VSK|B Chain B, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|D Chain D, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 138
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMD-NKRDEIMESTVKIAKMA 427
L++ K D+ ++ T+K + +
Sbjct: 68 NTPLLNCAKPDQDIKFTIKFQEFS 91
>pdb|1KGY|E Chain E, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|F Chain F, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|G Chain G, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|H Chain H, Crystal Structure Of The Ephb2-Ephrinb2 Complex
Length = 138
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMDNKR-DEIMESTVKIAKMA 427
L++ R D+ ++ T+K + +
Sbjct: 68 NTPLLNCARPDQDVKFTIKFQEFS 91
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 46/201 (22%)
Query: 261 SQPSGT--VLYVSFGS-FIK---LGREQILEF-----WHGMVNSGKRFLWVIRSDLIDGE 309
+P+G V+ VS GS F K RE + F WH ++ G++
Sbjct: 226 QRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKV------------ 273
Query: 310 PGVGPVPVELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 369
P EL + + + W PQ +L + F+TH+G + E + PMI
Sbjct: 274 -----TPAELGE-LPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAV 325
Query: 370 PQIGDQQVNSRCVSEIWKIGLDMKDTCDRSTIENLVRD----LMDNKRDEIMESTVKIAK 425
PQ DQ N+ + +G+ K + +T +L+R+ L+D+ E ++ +
Sbjct: 326 PQAVDQFGNADMLQ---GLGVARKLATEEATA-DLLRETALALVDDP-----EVARRLRR 376
Query: 426 MARDAVKEGGSSYRNLEKLIE 446
+ + +EGG+ R LIE
Sbjct: 377 IQAEMAQEGGT--RRAADLIE 395
>pdb|2WO2|B Chain B, Crystal Structure Of The Epha4-Ephrinb2 Complex
Length = 153
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESMVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 12 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 71
Query: 405 VRDLMD-NKRDEIMESTVKIAKMA 427
L++ K D+ ++ T+K + +
Sbjct: 72 NTPLLNCAKPDQDIKFTIKFQEFS 95
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 62/162 (38%), Gaps = 31/162 (19%)
Query: 258 WLDSQPSGTVLYVSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRSDLIDG--EPGV-GP 314
W +P VL VS G+ + EF+ + W + I G +P V GP
Sbjct: 224 WQPPRPDAPVLLVSLGNQFN----EHPEFFRACAQAFADTPWHV-VXAIGGFLDPAVLGP 278
Query: 315 VP--VELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQI 372
+P VE Q W P VLAH LTH + LE+ AGVP++ P
Sbjct: 279 LPPNVEAHQ----------WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHF 326
Query: 373 GDQQVNSRCVSEIWKIGL-------DMKDTCDRSTIENLVRD 407
+ S + ++GL ++ R +E L D
Sbjct: 327 ATEAAPS--AERVIELGLGSVLRPDQLEPASIREAVERLAAD 366
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 331 SWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGD 374
SW PQ +L H + + H G +TL ++ AGVP + +P GD
Sbjct: 298 SWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 332 WAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEI 385
W P +VL + +TH G + E++ G P++ PQ D Q +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 332 WAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQIGDQQVNSRCVSEI 385
W P +VL + +TH G + E++ G P++ PQ D Q +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 305 LIDGEPGVGPVPVELDQGTKERGCIVSWAPQE--EVLAHQAI 344
LID PG G P+ + Q K G +V PQE V+ +AI
Sbjct: 133 LIDLPPGTGDAPLTVXQDAKPTGVVVVSTPQELTAVIVEKAI 174
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 305 LIDGEPGVGPVPVELDQGTKERGCIVSWAPQE 336
LID PG G P+ + Q K G ++ PQE
Sbjct: 133 LIDLPPGTGDAPLTVXQDAKPNGAVIVSTPQE 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,060,821
Number of Sequences: 62578
Number of extensions: 615082
Number of successful extensions: 1213
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 27
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)