Query 044938
Match_columns 271
No_of_seqs 295 out of 1198
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 7.4E-27 2.5E-31 172.2 6.5 63 137-199 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 91.2 0.12 4.2E-06 39.4 2.7 28 134-164 3-31 (77)
3 1u3e_M HNH homing endonuclease 79.4 0.32 1.1E-05 40.6 -0.4 38 139-180 109-146 (174)
4 1z1b_A Integrase; protein-DNA 76.6 2.5 8.6E-05 36.8 4.5 42 140-186 14-55 (356)
5 3jtz_A Integrase; four strande 58.3 16 0.00054 27.5 5.0 44 142-186 28-75 (88)
6 3ju0_A Phage integrase; four s 41.4 35 0.0012 26.6 4.7 44 142-186 28-75 (108)
7 1b69_A Protein (integrase); in 37.0 27 0.00093 25.8 3.1 27 136-164 9-35 (69)
8 1x60_A Sporulation-specific N- 25.7 30 0.001 24.4 1.7 23 162-184 46-68 (79)
9 1uta_A FTSN, MSGA, cell divisi 20.6 43 0.0015 23.9 1.7 23 162-184 46-68 (81)
10 2ftc_I Mitochondrial ribosomal 18.4 1.5E+02 0.0051 23.6 4.6 37 148-188 78-115 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=7.4e-27 Score=172.22 Aligned_cols=63 Identities=97% Similarity=1.561 Sum_probs=59.9
Q ss_pred CcceeeEEcCCCceEEEEecCCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 044938 137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRI 199 (271)
Q Consensus 137 S~YRGVr~r~~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~~ 199 (271)
.+||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 479999999999999999999888999999999999999999999999999999999999764
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.19 E-value=0.12 Score=39.40 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=22.2
Q ss_pred CCCCcceeeEEcC-CCceEEEEecCCCCCeEe
Q 044938 134 SRGKHYRGVRQRP-WGKFAAEIRDPAKNGARV 164 (271)
Q Consensus 134 ~~~S~YRGVr~r~-~GKW~AeIr~~~k~Gkri 164 (271)
...|+|+||+|.+ .+.|.|.-.+ +|+|.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence 3579999999887 5999999998 45553
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=79.42 E-value=0.32 Score=40.57 Aligned_cols=38 Identities=5% Similarity=-0.123 Sum_probs=29.4
Q ss_pred ceeeEEcCCCceEEEEecCCCCCeEeecCCCCCHHHHHHHHH
Q 044938 139 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYD 180 (271)
Q Consensus 139 YRGVr~r~~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD 180 (271)
++||.+...++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 567755334679999987 3 4577999999999999965
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=76.65 E-value=2.5 Score=36.78 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=31.6
Q ss_pred eeeEEcCCCceEEEEecCCCCCeEeecCCCCCHHHHHHHHHHHHHHh
Q 044938 140 RGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRM 186 (271)
Q Consensus 140 RGVr~r~~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD~AA~~~ 186 (271)
.||++++.|.|..+... +|+++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36888888999988764 678899996 8888877766654444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=58.28 E-value=16 Score=27.53 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=30.5
Q ss_pred eEEcCCC--ceEEEEecCCCCCeEeecCCCC--CHHHHHHHHHHHHHHh
Q 044938 142 VRQRPWG--KFAAEIRDPAKNGARVWLGTFE--TAEDAALAYDRAAYRM 186 (271)
Q Consensus 142 Vr~r~~G--KW~AeIr~~~k~Gkri~LGtFd--T~EEAA~AYD~AA~~~ 186 (271)
++..+.| .|.-+.+...+. +++-||.|. |.++|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~-~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKE-SRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEE-EEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeE-EEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4556654 498888874332 678999997 5788877777665554
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=41.39 E-value=35 Score=26.58 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=29.7
Q ss_pred eEEcCCC--ceEEEEecCCCCCeEeecCCCC--CHHHHHHHHHHHHHHh
Q 044938 142 VRQRPWG--KFAAEIRDPAKNGARVWLGTFE--TAEDAALAYDRAAYRM 186 (271)
Q Consensus 142 Vr~r~~G--KW~AeIr~~~k~Gkri~LGtFd--T~EEAA~AYD~AA~~~ 186 (271)
++..+.| .|.-+.+...+ -+++-||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK-~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKK-QRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCc-eEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4556654 49888887433 2578899997 5777777766655554
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=36.99 E-value=27 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=21.4
Q ss_pred CCcceeeEEcCCCceEEEEecCCCCCeEe
Q 044938 136 GKHYRGVRQRPWGKFAAEIRDPAKNGARV 164 (271)
Q Consensus 136 ~S~YRGVr~r~~GKW~AeIr~~~k~Gkri 164 (271)
.--+.|+++|+.|+|+.++.+. .|++.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~--~Gkr~ 35 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS--FGEPQ 35 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT--TSSEE
T ss_pred CccCCCeEEccCCcEEEEEEcC--CCCEE
Confidence 4567899999999999999985 45554
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=25.66 E-value=30 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.5
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 044938 162 ARVWLGTFETAEDAALAYDRAAY 184 (271)
Q Consensus 162 kri~LGtFdT~EEAA~AYD~AA~ 184 (271)
-||++|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47999999999999888765443
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=20.63 E-value=43 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.5
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 044938 162 ARVWLGTFETAEDAALAYDRAAY 184 (271)
Q Consensus 162 kri~LGtFdT~EEAA~AYD~AA~ 184 (271)
-||.+|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999888665443
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=18.42 E-value=1.5e+02 Score=23.55 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=28.0
Q ss_pred CceEEEEecCCCCCeE-eecCCCCCHHHHHHHHHHHHHHhcC
Q 044938 148 GKFAAEIRDPAKNGAR-VWLGTFETAEDAALAYDRAAYRMRG 188 (271)
Q Consensus 148 GKW~AeIr~~~k~Gkr-i~LGtFdT~EEAA~AYD~AA~~~~G 188 (271)
-.|+|.|.. |+- +-++...+++.|..|..+|+.++-+
T Consensus 78 ~~wva~Vk~----G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 78 DHYVTPVKA----GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred cEEEEEECC----CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 349999986 444 3455557899999999999998743
Done!