BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044940
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 8 LPVGCKFLPSDEQLVHYYLFNKISG--IPTPFAEYFVKDVDLYDFDEPWDIWKRFGGTNL 65
LP G +F P+D++LV +YL K +G +P P + +VDLY FD PWD+ +R L
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPI----IAEVDLYKFD-PWDLPER----AL 65
Query: 66 EDGEDIYFFTRLKKKSINGSRIDRKVGSGAWQGEAAGKLVRSCNFNRPIGSKKRFRYEKD 125
+ YFFT +K NGSR +R G+G W+ A K V R +G KK +
Sbjct: 66 FGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAG 123
Query: 126 NSPH--NGCWIMHEYTMNASLLPQNHHCSS-----DCVLCRL 160
+P WIMHEY + + D VLCRL
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPFAEYFVKDVDLYDFDEPWDIWKRFGGTNLED 67
LP G +F P+DE+L+ YL K +G F+ + ++DLY FD PW + L
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFD-PWVL----PNKALFG 72
Query: 68 GEDIYFFTRLKKKSINGSRIDRKVGSGAWQGEAAGKLVRSCNFNRPIGSKKRFRYEKDNS 127
++ YFF+ +K NGSR +R GSG W+ K++ S R +G KK + +
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQR-VGIKKALVFYIGKA 130
Query: 128 PH--NGCWIMHEYTMNASLLPQNHHCSS---DCVLCRLRKN 163
P WIMHEY + + P + S+ D VLCR+ K
Sbjct: 131 PKGTKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPFAEYFVKDVDLYDFDEPWDIWKRFGGTNLED 67
LP G +F P+DE+L+ YL K +G F+ + ++DLY FD PW + L
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFD-PWVL----PNKALFG 69
Query: 68 GEDIYFFTRLKKKSINGSRIDRKVGSGAWQGEAAGKLVRSCNFNRPIGSKKRFRYEKDNS 127
++ YFF+ +K NGSR +R GSG W+ K++ + + +G KK + +
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKA 127
Query: 128 PH--NGCWIMHEYTMNASLLPQNHHCSS---DCVLCRLRKN 163
P WIMHEY + + P + S+ D VLCR+ K
Sbjct: 128 PKGTKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 2 QERSRILPVGCKFLPSDEQLVHYYLFNKISGIPTPFAEYF-VKDVDLYDFDEPWDIWKRF 60
++ SR LP G F P+ EQ YL N ++ P F +KD+D+ K F
Sbjct: 212 KQDSRNLPTGESFAPTGEQ--KEYLENGVAVASHPIESLFSLKDIDVNG--------KTF 261
Query: 61 GGTNLEDG 68
G +ED
Sbjct: 262 RGACIEDA 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,388,920
Number of Sequences: 62578
Number of extensions: 318489
Number of successful extensions: 497
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 10
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)