Query 044940
Match_columns 226
No_of_seqs 161 out of 991
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.6E-57 5.4E-62 375.1 14.7 154 3-165 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.6E-57 2.3E-61 370.9 14.1 152 5-165 14-167 (171)
3 1ldd_A APC2WHB, anaphase promo 39.0 14 0.00047 25.5 1.7 27 9-36 37-64 (74)
4 1cmb_A Met APO-repressor; DNA- 32.8 38 0.0013 24.2 3.2 38 15-59 50-87 (104)
5 1f6k_A N-acetylneuraminate lya 16.2 55 0.0019 27.7 1.7 28 8-37 106-133 (293)
6 2ehh_A DHDPS, dihydrodipicolin 16.1 56 0.0019 27.6 1.7 28 8-37 102-129 (294)
7 3cpr_A Dihydrodipicolinate syn 16.0 56 0.0019 27.8 1.7 28 8-37 118-145 (304)
8 2ojp_A DHDPS, dihydrodipicolin 16.0 56 0.0019 27.6 1.7 28 8-37 103-130 (292)
9 2nuw_A 2-keto-3-deoxygluconate 15.7 70 0.0024 27.0 2.2 28 8-37 98-126 (288)
10 4dox_A Coat protein; all helix 15.5 81 0.0028 26.2 2.4 27 5-31 152-178 (226)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.6e-57 Score=375.13 Aligned_cols=154 Identities=36% Similarity=0.631 Sum_probs=128.6
Q ss_pred cccCCCCCCceeCCChHHHHHHHHhhhhcCCCCCCccceEEeccCCCCCCCCchhhhcCCCCCCCCceEEeeeccccccC
Q 044940 3 ERSRILPVGCKFLPSDEQLVHYYLFNKISGIPTPFAEYFVKDVDLYDFDEPWDIWKRFGGTNLEDGEDIYFFTRLKKKSI 82 (226)
Q Consensus 3 ~~~~~LppGfRF~PTDeELi~~YL~~ki~g~~~p~~~~~I~~~Dvy~~~~Pw~L~~~~~~~~~~~~~~wyFFs~~~~~~~ 82 (226)
+....|||||||+|||||||.|||++|+.|.++|. .+|.++|||.+ |||+||+.+. .+..+|||||+++++|+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~--~~I~evDvy~~-~Pw~Lp~~~~----~g~~ewYFFs~r~~ky~ 82 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKF-DPWDLPERAL----FGAREWYFFTPRDRKYP 82 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS--SCCEECCGGGS-CGGGSGGGCS----SCSSEEEEEEECCC---
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCc--CeeeecccccC-Cchhhhhhhc----cCCceEEEEeccccccC
Confidence 45678999999999999999999999999999986 58999999985 9999998742 23456999999999999
Q ss_pred CCCcccccccceeeeccCCCceEEeCCCCeeeeeEEEEeeecCCCCC--CcCeEEEEEEeCCCCCCC-----CCCCCCCe
Q 044940 83 NGSRIDRKVGSGAWQGEAAGKLVRSCNFNRPIGSKKRFRYEKDNSPH--NGCWIMHEYTMNASLLPQ-----NHHCSSDC 155 (226)
Q Consensus 83 ~g~R~~R~~~~G~Wk~~g~~k~I~~~~~g~~vG~kk~l~Fy~g~~~~--kT~WvMhEY~l~~~~~~~-----~~~~~~~~ 155 (226)
+|.|++|+|++||||++|+++.|... |.+||+||+|+||.|++++ +|+|+||||+|....... +....++|
T Consensus 83 ~g~R~nR~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w 160 (174)
T 3ulx_A 83 NGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW 160 (174)
T ss_dssp --CCSCEEETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred CCCCceeecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence 99999999999999999999999875 8999999999999998875 899999999999764321 11246899
Q ss_pred EEEEEEecCC
Q 044940 156 VLCRLRKNGG 165 (226)
Q Consensus 156 VLCrI~~k~~ 165 (226)
||||||+|++
T Consensus 161 VlCrvf~K~~ 170 (174)
T 3ulx_A 161 VLCRLYNKKN 170 (174)
T ss_dssp EEEEEEESCC
T ss_pred EEEEEEEcCC
Confidence 9999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.6e-57 Score=370.93 Aligned_cols=152 Identities=32% Similarity=0.622 Sum_probs=124.1
Q ss_pred cCCCCCCceeCCChHHHHHHHHhhhhcCCCCCCccceEEeccCCCCCCCCchhhhcCCCCCCCCceEEeeeccccccCCC
Q 044940 5 SRILPVGCKFLPSDEQLVHYYLFNKISGIPTPFAEYFVKDVDLYDFDEPWDIWKRFGGTNLEDGEDIYFFTRLKKKSING 84 (226)
Q Consensus 5 ~~~LppGfRF~PTDeELi~~YL~~ki~g~~~p~~~~~I~~~Dvy~~~~Pw~L~~~~~~~~~~~~~~wyFFs~~~~~~~~g 84 (226)
...|||||||+|||||||.|||++|+.|.+++. .+|.++|||.+ |||+||+.+ ..++.+|||||++++++++|
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~--~~I~e~Diy~~-~Pw~Lp~~~----~~g~~ewyFFs~r~~k~~~g 86 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL--QLIAEIDLYKF-DPWVLPNKA----LFGEKEWYFFSPRDRKYPNG 86 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS--CCSEECCGGGS-CGGGHHHHS----SSCSSEEEEEEECCC-----
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCC--CeEeecccccC-ChhHhhchh----hcCCccEEEEeccccccCCC
Confidence 568999999999999999999999999999986 58999999985 999999974 23445699999999999999
Q ss_pred CcccccccceeeeccCCCceEEeCCCCeeeeeEEEEeeecCCCCC--CcCeEEEEEEeCCCCCCCCCCCCCCeEEEEEEe
Q 044940 85 SRIDRKVGSGAWQGEAAGKLVRSCNFNRPIGSKKRFRYEKDNSPH--NGCWIMHEYTMNASLLPQNHHCSSDCVLCRLRK 162 (226)
Q Consensus 85 ~R~~R~~~~G~Wk~~g~~k~I~~~~~g~~vG~kk~l~Fy~g~~~~--kT~WvMhEY~l~~~~~~~~~~~~~~~VLCrI~~ 162 (226)
.|++|+|++||||++|+++.|... +.+||+||+|+||.+++++ +|+|+||||+|.......+....++|||||||+
T Consensus 87 ~R~~R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~ 164 (171)
T 1ut7_A 87 SRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYK 164 (171)
T ss_dssp --CCEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEE
T ss_pred CcccccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEE
Confidence 999999999999999999999985 7999999999999998875 899999999999764322224568999999999
Q ss_pred cCC
Q 044940 163 NGG 165 (226)
Q Consensus 163 k~~ 165 (226)
|..
T Consensus 165 k~~ 167 (171)
T 1ut7_A 165 KQS 167 (171)
T ss_dssp CC-
T ss_pred cCC
Confidence 864
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=38.97 E-value=14 Score=25.47 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCCceeCC-ChHHHHHHHHhhhhcCCCCC
Q 044940 9 PVGCKFLP-SDEQLVHYYLFNKISGIPTP 36 (226)
Q Consensus 9 ppGfRF~P-TDeELi~~YL~~ki~g~~~p 36 (226)
|.|+.|.. |++||-. ||..++....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 8899888 899999987653
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=32.78 E-value=38 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHhhhhcCCCCCCccceEEeccCCCCCCCCchhhh
Q 044940 15 LPSDEQLVHYYLFNKISGIPTPFAEYFVKDVDLYDFDEPWDIWKR 59 (226)
Q Consensus 15 ~PTDeELi~~YL~~ki~g~~~p~~~~~I~~~Dvy~~~~Pw~L~~~ 59 (226)
|-|.-||+|.-...-..|+|+|.+ .|+-. +.|.++|+.
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D------~Dl~K-d~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD------ADLRK-ERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG------GGGBT-TSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc------hhhhh-cCCccchHH
Confidence 578889998877788999999973 47765 588888865
No 5
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=16.23 E-value=55 Score=27.66 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=17.6
Q ss_pred CCCCceeCCChHHHHHHHHhhhhcCCCCCC
Q 044940 8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPF 37 (226)
Q Consensus 8 LppGfRF~PTDeELi~~YL~~ki~g~~~p~ 37 (226)
+||-| |.||+++|+.||-. -...-++|.
T Consensus 106 ~~P~y-~~~~~~~l~~~f~~-va~a~~lPi 133 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYYDT-IIAETGSNM 133 (293)
T ss_dssp ECCCS-SCCCHHHHHHHHHH-HHHHHCCCE
T ss_pred CCCCC-CCCCHHHHHHHHHH-HHHhCCCCE
Confidence 45644 88999999997643 333234553
No 6
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=16.09 E-value=56 Score=27.64 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=17.9
Q ss_pred CCCCceeCCChHHHHHHHHhhhhcCCCCCC
Q 044940 8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPF 37 (226)
Q Consensus 8 LppGfRF~PTDeELi~~YL~~ki~g~~~p~ 37 (226)
+||- .|.||+++|+.||-. -...-++|.
T Consensus 102 ~~P~-y~~~s~~~l~~~f~~-va~a~~lPi 129 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHFKT-VAQEVDIPI 129 (294)
T ss_dssp ECCC-SSCCCHHHHHHHHHH-HHHHCCSCE
T ss_pred CCCC-CCCCCHHHHHHHHHH-HHHhcCCCE
Confidence 4554 478999999998742 333334553
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=16.04 E-value=56 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=18.1
Q ss_pred CCCCceeCCChHHHHHHHHhhhhcCCCCCC
Q 044940 8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPF 37 (226)
Q Consensus 8 LppGfRF~PTDeELi~~YL~~ki~g~~~p~ 37 (226)
+|| |.|.|++++|+.||-. -....++|.
T Consensus 118 ~~P-~y~~~~~~~l~~~f~~-ia~a~~lPi 145 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFGA-IAAATEVPI 145 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHHH-HHHHCCSCE
T ss_pred CCC-CCCCCCHHHHHHHHHH-HHHhcCCCE
Confidence 466 4488999999997742 333334553
No 8
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=15.99 E-value=56 Score=27.58 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=17.8
Q ss_pred CCCCceeCCChHHHHHHHHhhhhcCCCCCC
Q 044940 8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPF 37 (226)
Q Consensus 8 LppGfRF~PTDeELi~~YL~~ki~g~~~p~ 37 (226)
+||- .|.||+++|+.||- .-...-++|.
T Consensus 103 ~~P~-y~~~s~~~l~~~f~-~ia~a~~lPi 130 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHFK-AIAEHTDLPQ 130 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHH-HHHTTCSSCE
T ss_pred CCCC-CCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 4564 47899999999773 2333334553
No 9
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=15.73 E-value=70 Score=26.98 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=17.8
Q ss_pred CCCCceeC-CChHHHHHHHHhhhhcCCCCCC
Q 044940 8 LPVGCKFL-PSDEQLVHYYLFNKISGIPTPF 37 (226)
Q Consensus 8 LppGfRF~-PTDeELi~~YL~~ki~g~~~p~ 37 (226)
+||-| |. ||+++|+.||-. -...-++|.
T Consensus 98 ~~P~y-~~~~s~~~l~~~f~~-va~a~~lPi 126 (288)
T 2nuw_A 98 HSPYY-FPRLPEKFLAKYYEE-IARISSHSL 126 (288)
T ss_dssp CCCCS-SCSCCHHHHHHHHHH-HHHHCCSCE
T ss_pred cCCcC-CCCCCHHHHHHHHHH-HHHhcCCCE
Confidence 46644 77 999999997742 333334553
No 10
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=15.52 E-value=81 Score=26.20 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=17.9
Q ss_pred cCCCCCCceeCCChHHHHHHHHhhhhc
Q 044940 5 SRILPVGCKFLPSDEQLVHYYLFNKIS 31 (226)
Q Consensus 5 ~~~LppGfRF~PTDeELi~~YL~~ki~ 31 (226)
++.-+-|..+.||++|+|-|=..+++.
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 334445899999999999976655543
Done!