BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044941
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDILL 202
V +W+ W+D+ C ++NCY+ALP GK+I E +LP + S T+ ++ D+++
Sbjct: 262 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIM 320
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDILL 202
+ +W+ W+D+ C +++NCY ALP GK+I E +LP + S T+ ++ D L+
Sbjct: 265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALM 323
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDILL 202
+ +W+L W+D C +++NCY ALPA GK++ + +LP + + ++ + D+++
Sbjct: 262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIM 321
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 153 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDILL 202
W+D++C + NC+KAL GK+I E +LP++ N S+ ++ + D L+
Sbjct: 280 WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLM 329
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 153 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL 195
W+D++C + NC+KAL GK+I E +LP++ N S+ ++ +
Sbjct: 280 WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLV 322
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ 190
+ +L W D++ I+ NC + PA G+++ + V+P+ ++ Q
Sbjct: 253 LKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQ 297
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179
V +VL W+D++ I+ C +AL GG+L+ +
Sbjct: 252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 287
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179
V +VL W+D++ I+ C +AL GG+L+ +
Sbjct: 252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 287
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 149 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185
VL W D +C ++E Y GG ++ E +L +D
Sbjct: 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED 289
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 73 PPQSEAFADHQNAQQALETVAQQVPNFGTEH 103
P Q A A H +QALETV Q +P H
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAH 490
Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 73 PPQSEAFADHQNAQQALETVAQQVPNFGTEH 103
P Q A A H +QALETV + +P H
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAH 660
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 73 PPQSEAFADHQNAQQALETVAQQVPNFGTEH 103
P Q A A H +QALETV + +P H
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAH 355
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 73 PPQSEAFADHQNAQQALETVAQQVPNFGTEH 103
P Q A A H +QALETV + +P H
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTH 456
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALP---AGGKLIACEPVLPDDSNESQRTRALLEGDI 200
V +WVL W D++ I++N +A+ GK+I + + + S++ T L+ D+
Sbjct: 255 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 314
Query: 201 LL 202
++
Sbjct: 315 VM 316
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALP---AGGKLIACEPVLPDDSNESQRTRALLEGDI 200
V +WVL W D++ I++N +A+ GK+I + + + S++ T L+ D+
Sbjct: 254 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 313
Query: 201 LL 202
++
Sbjct: 314 VM 315
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALP---AGGKLIACEPVLPDDSNESQRTRALLEGDI 200
V +WVL W D++ I++N +A+ GK+I + + + S++ T L+ D+
Sbjct: 251 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 310
Query: 201 LL 202
++
Sbjct: 311 VM 312
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179
+ +VL W D + I+ C +AL GG+++ E
Sbjct: 253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE 288
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 56 NPLSKKEDVDRPTSNPLPPQSEA 78
PL+K ++V RP NP P+ EA
Sbjct: 45 GPLAKNKEVKRPRLNPFLPRDEA 67
>pdb|3IDW|A Chain A, Crystal Structure Of Sla1 Homology Domain 2
Length = 72
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 158 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIL 201
C + + NC + + E ++PD +N RT L EGDI+
Sbjct: 12 CGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIV 55
>pdb|4GG4|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To
Specific Dna-Rna Hybrid
Length = 499
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 68 TSNPL---PPQSEAFADHQNAQQALETVAQQVPNFGTEHD 104
T PL P Q A A H +QALETV + +P H
Sbjct: 54 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 93
>pdb|3V6T|A Chain A, Crystal Structure Of The Dna-Bound Dhax3, A Tal Effector,
At 1.85 Angstrom
pdb|3V6T|B Chain B, Crystal Structure Of The Dna-Bound Dhax3, A Tal Effector,
At 1.85 Angstrom
Length = 499
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 68 TSNPL---PPQSEAFADHQNAQQALETVAQQVPNFGTEHD 104
T PL P Q A A H +QALETV + +P H
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 100
>pdb|4GJR|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To
Methylated Dsdna
pdb|4GJR|B Chain B, Crystal Structure Of The Tal Effector Dhax3 Bound To
Methylated Dsdna
Length = 499
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 68 TSNPL---PPQSEAFADHQNAQQALETVAQQVPNFGTEHD 104
T PL P Q A A H +QALETV + +P H
Sbjct: 54 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,200,044
Number of Sequences: 62578
Number of extensions: 230282
Number of successful extensions: 453
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 103
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)