Query 044941
Match_columns 202
No_of_seqs 163 out of 1224
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.8 1.2E-20 2.7E-25 160.2 7.6 149 22-202 61-222 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.7 9.5E-17 2.1E-21 145.1 7.5 108 78-202 180-299 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.4 6.2E-13 1.3E-17 117.1 10.2 101 77-187 151-262 (306)
4 KOG2202 U2 snRNP splicing fact 98.8 9.6E-10 2.1E-14 96.1 1.3 88 97-184 7-108 (260)
5 TIGR00740 methyltransferase, p 98.0 2.5E-05 5.4E-10 66.4 8.8 100 77-186 55-168 (239)
6 PRK06922 hypothetical protein; 98.0 1.4E-05 3E-10 78.6 6.7 99 77-187 420-545 (677)
7 PRK15451 tRNA cmo(5)U34 methyl 97.9 5.6E-05 1.2E-09 65.0 7.9 100 77-186 58-171 (247)
8 PF12847 Methyltransf_18: Meth 97.9 3.3E-05 7.1E-10 57.1 5.6 94 77-179 3-111 (112)
9 smart00828 PKS_MT Methyltransf 97.3 0.00073 1.6E-08 56.3 6.6 93 78-182 2-107 (224)
10 PF08242 Methyltransf_12: Meth 97.2 0.00016 3.4E-09 52.8 1.6 86 80-175 1-99 (99)
11 PTZ00098 phosphoethanolamine N 97.1 0.0014 3E-08 57.1 7.0 96 76-184 53-161 (263)
12 COG2226 UbiE Methylase involve 97.1 0.0017 3.7E-08 56.7 7.0 99 76-187 52-164 (238)
13 PF05891 Methyltransf_PK: AdoM 97.0 0.00042 9.1E-09 59.9 2.5 101 75-185 55-167 (218)
14 PRK15001 SAM-dependent 23S rib 97.0 0.0035 7.5E-08 58.1 8.5 98 77-179 230-340 (378)
15 PRK11036 putative S-adenosyl-L 96.9 0.002 4.3E-08 55.4 6.1 91 77-179 46-149 (255)
16 PLN02336 phosphoethanolamine N 96.9 0.0029 6.4E-08 59.0 7.1 99 77-185 39-148 (475)
17 PRK00216 ubiE ubiquinone/menaq 96.8 0.0062 1.4E-07 50.4 8.1 97 77-185 53-164 (239)
18 TIGR00477 tehB tellurite resis 96.8 0.0055 1.2E-07 50.9 7.6 96 77-182 32-136 (195)
19 PLN03075 nicotianamine synthas 96.8 0.0033 7.1E-08 56.6 6.7 92 77-178 125-232 (296)
20 PRK11207 tellurite resistance 96.8 0.0037 8.1E-08 52.0 6.4 96 77-183 32-138 (197)
21 TIGR01934 MenG_MenH_UbiE ubiqu 96.7 0.006 1.3E-07 50.0 7.2 93 77-184 41-148 (223)
22 PLN02233 ubiquinone biosynthes 96.7 0.011 2.3E-07 51.6 8.6 99 76-184 74-187 (261)
23 TIGR03438 probable methyltrans 96.5 0.011 2.3E-07 52.6 7.7 92 77-178 65-176 (301)
24 PF13847 Methyltransf_31: Meth 96.4 0.0079 1.7E-07 47.4 5.6 93 76-181 4-112 (152)
25 PLN02244 tocopherol O-methyltr 96.4 0.012 2.5E-07 53.3 7.2 94 77-182 120-226 (340)
26 TIGR02752 MenG_heptapren 2-hep 96.3 0.014 3E-07 48.9 7.1 94 77-183 47-155 (231)
27 PF01209 Ubie_methyltran: ubiE 96.3 0.002 4.3E-08 55.6 2.1 96 77-185 49-159 (233)
28 PLN02490 MPBQ/MSBQ methyltrans 96.3 0.012 2.7E-07 53.8 7.1 91 77-183 115-219 (340)
29 PRK15068 tRNA mo(5)U34 methylt 96.3 0.018 3.9E-07 51.9 7.8 99 77-185 124-232 (322)
30 PRK14103 trans-aconitate 2-met 96.2 0.013 2.8E-07 50.3 6.5 88 77-178 31-125 (255)
31 PF08241 Methyltransf_11: Meth 96.2 0.0061 1.3E-07 42.8 3.5 81 80-177 1-95 (95)
32 PRK08317 hypothetical protein; 96.1 0.024 5.2E-07 46.5 7.2 90 77-180 21-125 (241)
33 PRK09489 rsmC 16S ribosomal RN 96.0 0.028 6E-07 51.3 8.0 95 76-180 197-304 (342)
34 PLN02336 phosphoethanolamine N 96.0 0.034 7.3E-07 51.9 8.6 94 77-184 268-374 (475)
35 smart00138 MeTrc Methyltransfe 96.0 0.024 5.3E-07 49.5 7.2 51 121-179 185-242 (264)
36 TIGR02072 BioC biotin biosynth 96.0 0.028 6E-07 46.3 7.1 92 77-180 36-136 (240)
37 PF05401 NodS: Nodulation prot 96.0 0.0029 6.3E-08 54.1 1.2 91 77-180 45-147 (201)
38 PRK04457 spermidine synthase; 96.0 0.024 5.2E-07 49.6 7.0 94 76-178 67-176 (262)
39 TIGR03587 Pse_Me-ase pseudamin 95.8 0.03 6.4E-07 47.2 6.7 91 77-183 45-146 (204)
40 PRK12335 tellurite resistance 95.8 0.029 6.2E-07 49.3 6.9 94 77-182 122-226 (287)
41 PRK01683 trans-aconitate 2-met 95.8 0.038 8.2E-07 47.1 7.4 84 77-178 33-129 (258)
42 TIGR00452 methyltransferase, p 95.7 0.047 1E-06 49.4 7.7 97 77-184 123-230 (314)
43 COG2813 RsmC 16S RNA G1207 met 95.6 0.046 1E-06 49.4 7.5 100 76-180 159-267 (300)
44 PRK08287 cobalt-precorrin-6Y C 95.4 0.048 1E-06 44.5 6.3 89 76-180 32-132 (187)
45 PF13489 Methyltransf_23: Meth 95.2 0.03 6.4E-07 43.3 4.3 89 76-183 23-119 (161)
46 PRK11873 arsM arsenite S-adeno 95.2 0.086 1.9E-06 45.5 7.5 96 76-184 78-188 (272)
47 KOG1540 Ubiquinone biosynthesi 95.1 0.092 2E-06 47.1 7.5 98 72-181 97-216 (296)
48 PLN02396 hexaprenyldihydroxybe 95.0 0.057 1.2E-06 49.0 6.1 91 77-179 133-235 (322)
49 cd02440 AdoMet_MTases S-adenos 95.0 0.09 2E-06 35.9 5.9 87 79-178 2-103 (107)
50 TIGR02469 CbiT precorrin-6Y C5 94.8 0.14 3E-06 37.8 6.7 85 77-177 21-120 (124)
51 PRK00121 trmB tRNA (guanine-N( 94.6 0.072 1.6E-06 44.5 5.4 110 65-179 30-156 (202)
52 PF02353 CMAS: Mycolic acid cy 94.6 0.072 1.6E-06 47.1 5.5 99 76-185 63-172 (273)
53 PRK07580 Mg-protoporphyrin IX 94.5 0.11 2.4E-06 43.1 6.2 89 77-176 65-162 (230)
54 PRK06202 hypothetical protein; 94.3 0.13 2.7E-06 43.5 6.3 89 77-179 62-166 (232)
55 PF13649 Methyltransf_25: Meth 94.3 0.031 6.8E-07 40.9 2.2 84 79-173 1-101 (101)
56 COG2242 CobL Precorrin-6B meth 94.2 0.14 3E-06 43.5 6.2 87 77-180 36-136 (187)
57 PF05175 MTS: Methyltransferas 94.2 0.11 2.3E-06 42.2 5.4 91 77-178 33-139 (170)
58 TIGR00091 tRNA (guanine-N(7)-) 93.9 0.097 2.1E-06 43.3 4.6 90 77-178 18-131 (194)
59 TIGR00537 hemK_rel_arch HemK-r 93.8 0.16 3.5E-06 41.1 5.7 103 77-183 21-144 (179)
60 PRK00107 gidB 16S rRNA methylt 93.6 0.26 5.6E-06 41.2 6.7 88 76-180 46-146 (187)
61 TIGR01983 UbiG ubiquinone bios 93.4 0.15 3.2E-06 42.3 4.9 91 76-179 46-149 (224)
62 PRK11805 N5-glutamine S-adenos 92.8 0.47 1E-05 42.5 7.6 94 77-177 135-261 (307)
63 PLN02232 ubiquinone biosynthes 92.6 0.21 4.4E-06 40.2 4.5 43 132-184 44-86 (160)
64 TIGR03533 L3_gln_methyl protei 92.2 0.73 1.6E-05 40.7 7.9 95 77-179 123-250 (284)
65 TIGR03534 RF_mod_PrmC protein- 91.9 0.75 1.6E-05 38.5 7.3 97 77-178 89-216 (251)
66 PF01739 CheR: CheR methyltran 91.7 0.14 3.1E-06 43.2 2.7 52 120-179 117-175 (196)
67 PRK00377 cbiT cobalt-precorrin 91.3 1.1 2.5E-05 36.9 7.7 86 77-177 42-143 (198)
68 PRK11705 cyclopropane fatty ac 91.3 0.78 1.7E-05 42.4 7.3 93 77-183 169-271 (383)
69 TIGR00406 prmA ribosomal prote 91.2 1 2.2E-05 39.8 7.6 91 76-181 160-261 (288)
70 PF06080 DUF938: Protein of un 91.2 1.4 2.9E-05 37.9 8.2 100 78-185 28-147 (204)
71 TIGR02021 BchM-ChlM magnesium 90.6 0.85 1.8E-05 38.0 6.4 91 76-177 56-155 (219)
72 PLN02366 spermidine synthase 90.5 1.1 2.4E-05 40.4 7.4 92 76-177 92-204 (308)
73 PRK10611 chemotaxis methyltran 90.4 0.34 7.4E-06 43.4 4.0 52 119-178 202-261 (287)
74 PRK04266 fibrillarin; Provisio 90.3 2 4.4E-05 36.9 8.6 85 77-177 74-174 (226)
75 COG2230 Cfa Cyclopropane fatty 89.7 1.1 2.3E-05 40.4 6.6 100 76-186 73-183 (283)
76 PRK13944 protein-L-isoaspartat 89.5 1.5 3.3E-05 36.5 7.1 84 77-178 74-172 (205)
77 COG2519 GCD14 tRNA(1-methylade 89.4 1.1 2.3E-05 39.9 6.2 90 77-183 96-199 (256)
78 PRK07402 precorrin-6B methylas 89.3 1.6 3.6E-05 35.7 7.0 87 77-180 42-143 (196)
79 PRK09328 N5-glutamine S-adenos 89.3 1.3 2.8E-05 37.8 6.7 96 77-177 110-236 (275)
80 TIGR00138 gidB 16S rRNA methyl 89.0 1.3 2.8E-05 36.6 6.2 86 77-179 44-142 (181)
81 TIGR00536 hemK_fam HemK family 89.0 1.5 3.3E-05 38.4 7.0 95 77-180 116-244 (284)
82 PRK05134 bifunctional 3-demeth 88.9 0.91 2E-05 37.9 5.3 89 77-179 50-151 (233)
83 PRK00811 spermidine synthase; 88.6 1.8 3.9E-05 38.2 7.2 93 76-178 77-190 (283)
84 PRK14904 16S rRNA methyltransf 88.1 2.2 4.8E-05 40.0 7.8 107 77-188 252-386 (445)
85 PRK14901 16S rRNA methyltransf 87.9 2 4.4E-05 40.1 7.4 106 76-186 253-391 (434)
86 PLN02781 Probable caffeoyl-CoA 87.4 1.7 3.8E-05 37.2 6.2 90 78-183 71-181 (234)
87 PF12147 Methyltransf_20: Puta 87.4 2.2 4.7E-05 38.9 6.9 91 76-177 136-247 (311)
88 PRK10901 16S rRNA methyltransf 87.3 4.6 9.9E-05 37.7 9.3 106 76-187 245-380 (427)
89 COG2227 UbiG 2-polyprenyl-3-me 87.0 0.85 1.8E-05 40.2 4.1 92 76-179 60-161 (243)
90 TIGR00080 pimt protein-L-isoas 87.0 2 4.2E-05 35.9 6.1 84 76-178 78-176 (215)
91 COG1352 CheR Methylase of chem 87.0 0.94 2E-05 40.3 4.4 41 130-178 200-240 (268)
92 KOG2361 Predicted methyltransf 86.3 1.2 2.6E-05 39.6 4.6 97 78-183 74-187 (264)
93 TIGR00563 rsmB ribosomal RNA s 86.3 5.2 0.00011 37.2 9.1 109 76-188 239-377 (426)
94 PRK14902 16S rRNA methyltransf 86.2 3.9 8.4E-05 38.2 8.3 102 77-183 252-383 (444)
95 TIGR03840 TMPT_Se_Te thiopurin 85.7 4 8.7E-05 34.6 7.5 98 77-182 36-155 (213)
96 PF06859 Bin3: Bicoid-interact 85.7 0.15 3.3E-06 39.8 -1.1 31 147-177 12-42 (110)
97 PF00642 zf-CCCH: Zinc finger 85.5 0.29 6.4E-06 28.5 0.3 23 105-127 3-25 (27)
98 PRK00517 prmA ribosomal protei 85.0 4.2 9E-05 34.9 7.3 92 76-183 120-217 (250)
99 TIGR00417 speE spermidine synt 84.8 3.8 8.3E-05 35.7 7.1 94 77-178 74-185 (270)
100 PF13659 Methyltransf_26: Meth 84.7 1.5 3.2E-05 32.2 3.9 95 77-178 2-114 (117)
101 PRK01544 bifunctional N5-gluta 84.3 4.4 9.5E-05 38.9 7.8 94 77-177 140-267 (506)
102 PRK05785 hypothetical protein; 83.7 4.3 9.4E-05 34.5 6.8 93 77-183 53-149 (226)
103 PRK10258 biotin biosynthesis p 83.6 1.8 3.9E-05 36.7 4.4 86 77-180 44-141 (251)
104 PRK14968 putative methyltransf 82.6 6.3 0.00014 31.2 7.0 101 77-179 25-148 (188)
105 KOG2899 Predicted methyltransf 81.7 1.6 3.5E-05 39.0 3.4 31 147-177 177-207 (288)
106 PRK00312 pcm protein-L-isoaspa 81.5 5 0.00011 33.2 6.2 84 76-178 79-174 (212)
107 PRK13942 protein-L-isoaspartat 81.4 4.3 9.3E-05 34.1 5.8 84 76-178 77-175 (212)
108 COG4798 Predicted methyltransf 81.0 3.2 7E-05 36.1 5.0 54 130-188 120-175 (238)
109 COG0421 SpeE Spermidine syntha 80.5 2.6 5.5E-05 37.8 4.4 90 78-178 79-189 (282)
110 COG4123 Predicted O-methyltran 80.2 2.2 4.7E-05 37.7 3.8 103 67-178 38-169 (248)
111 KOG1270 Methyltransferases [Co 79.3 1.7 3.8E-05 39.0 2.9 92 76-179 90-195 (282)
112 PRK14121 tRNA (guanine-N(7)-)- 79.1 5.9 0.00013 37.2 6.5 88 78-177 125-233 (390)
113 TIGR00446 nop2p NOL1/NOP2/sun 79.0 19 0.0004 31.3 9.2 106 76-186 72-206 (264)
114 TIGR00438 rrmJ cell division p 78.7 11 0.00024 30.6 7.4 22 157-178 124-145 (188)
115 PRK13255 thiopurine S-methyltr 78.5 12 0.00026 31.9 7.7 96 76-179 38-155 (218)
116 PRK11088 rrmA 23S rRNA methylt 78.5 6 0.00013 34.3 6.0 85 77-179 87-181 (272)
117 PF05219 DREV: DREV methyltran 78.1 4.2 9.1E-05 36.4 4.9 88 76-178 95-187 (265)
118 PF08003 Methyltransf_9: Prote 77.2 4.5 9.7E-05 37.0 4.9 97 77-185 117-225 (315)
119 PRK01581 speE spermidine synth 77.0 14 0.0003 34.6 8.2 97 76-178 151-267 (374)
120 COG4627 Uncharacterized protei 76.8 1 2.3E-05 37.8 0.7 47 123-177 37-84 (185)
121 PRK03612 spermidine synthase; 76.5 9.5 0.00021 36.7 7.2 93 76-178 298-414 (521)
122 PRK11188 rrmJ 23S rRNA methylt 75.7 6.2 0.00013 33.2 5.2 22 158-179 144-165 (209)
123 PRK14903 16S rRNA methyltransf 75.7 12 0.00027 35.0 7.6 112 76-192 238-379 (431)
124 TIGR01177 conserved hypothetic 75.3 14 0.0003 33.1 7.6 98 77-178 184-293 (329)
125 KOG3115 Methyltransferase-like 74.7 1.5 3.3E-05 38.3 1.2 35 64-98 43-84 (249)
126 PRK13256 thiopurine S-methyltr 74.5 17 0.00037 31.5 7.7 98 77-182 45-166 (226)
127 KOG4300 Predicted methyltransf 73.8 3 6.6E-05 36.6 2.8 45 133-187 146-190 (252)
128 PLN02585 magnesium protoporphy 72.6 10 0.00023 34.3 6.1 91 77-177 146-247 (315)
129 PF09243 Rsm22: Mitochondrial 72.2 12 0.00025 33.0 6.2 95 78-183 36-143 (274)
130 PLN02476 O-methyltransferase 71.3 14 0.0003 33.1 6.5 92 78-185 121-233 (278)
131 TIGR03439 methyl_EasF probable 69.8 8.1 0.00017 35.2 4.8 33 149-181 166-200 (319)
132 PRK14967 putative methyltransf 67.9 19 0.00041 30.2 6.3 100 77-180 38-160 (223)
133 PLN02589 caffeoyl-CoA O-methyl 67.5 17 0.00037 31.8 6.2 91 78-184 82-194 (247)
134 KOG3010 Methyltransferase [Gen 67.0 6.9 0.00015 34.9 3.6 89 78-177 36-134 (261)
135 PTZ00146 fibrillarin; Provisio 66.7 57 0.0012 29.5 9.5 88 77-178 134-236 (293)
136 PF03848 TehB: Tellurite resis 64.9 7 0.00015 33.1 3.2 95 77-181 32-135 (192)
137 PF06325 PrmA: Ribosomal prote 63.1 6.5 0.00014 35.4 2.8 91 78-184 164-263 (295)
138 KOG1271 Methyltransferases [Ge 62.4 13 0.00029 32.1 4.4 97 78-179 70-181 (227)
139 COG5459 Predicted rRNA methyla 61.8 8.7 0.00019 36.4 3.4 47 130-181 181-227 (484)
140 PRK00536 speE spermidine synth 59.4 14 0.0003 32.8 4.1 80 83-178 81-170 (262)
141 COG4301 Uncharacterized conser 59.1 35 0.00076 30.9 6.6 29 149-177 163-191 (321)
142 PF07021 MetW: Methionine bios 58.3 8.8 0.00019 32.8 2.6 58 74-140 13-83 (193)
143 smart00650 rADc Ribosomal RNA 56.8 21 0.00046 28.4 4.6 22 77-98 15-37 (169)
144 KOG1677 CCCH-type Zn-finger pr 56.6 5.8 0.00013 35.3 1.3 24 105-128 177-200 (332)
145 smart00356 ZnF_C3H1 zinc finge 56.4 5.8 0.00013 22.0 0.8 20 107-127 6-25 (27)
146 PRK13943 protein-L-isoaspartat 54.3 59 0.0013 29.5 7.4 86 76-180 81-181 (322)
147 PLN02823 spermine synthase 44.4 73 0.0016 29.1 6.5 91 78-177 106-218 (336)
148 PF01596 Methyltransf_3: O-met 43.7 24 0.00051 30.0 3.0 90 78-183 48-158 (205)
149 PF04672 Methyltransf_19: S-ad 42.6 17 0.00036 32.6 1.9 34 149-182 159-193 (267)
150 PRK14966 unknown domain/N5-glu 41.8 1.3E+02 0.0029 28.6 7.9 94 77-180 253-381 (423)
151 COG4106 Tam Trans-aconitate me 39.6 45 0.00097 29.6 4.1 84 77-178 32-128 (257)
152 PF03141 Methyltransf_29: Puta 39.5 38 0.00083 33.0 3.9 94 79-181 369-469 (506)
153 TIGR00755 ksgA dimethyladenosi 37.1 56 0.0012 27.9 4.3 29 77-105 31-61 (253)
154 PF10294 Methyltransf_16: Puta 36.8 72 0.0016 25.8 4.7 96 76-181 46-158 (173)
155 PF08704 GCD14: tRNA methyltra 36.7 37 0.00079 29.8 3.1 92 74-183 40-150 (247)
156 COG2264 PrmA Ribosomal protein 36.0 1.2E+02 0.0025 27.7 6.3 93 76-184 163-267 (300)
157 KOG3045 Predicted RNA methylas 35.3 52 0.0011 30.0 3.9 24 157-180 242-265 (325)
158 TIGR01645 half-pint poly-U bin 35.3 35 0.00076 34.0 3.1 40 130-179 511-553 (612)
159 COG2890 HemK Methylase of poly 35.2 42 0.0009 29.7 3.3 22 78-99 113-135 (280)
160 KOG1500 Protein arginine N-met 34.8 74 0.0016 30.2 4.9 85 78-175 180-278 (517)
161 PF01234 NNMT_PNMT_TEMT: NNMT/ 34.8 31 0.00067 30.5 2.4 42 132-181 158-201 (256)
162 COG4122 Predicted O-methyltran 34.0 1.9E+02 0.004 25.1 7.0 93 77-185 61-171 (219)
163 COG3897 Predicted methyltransf 33.9 1.3E+02 0.0028 26.3 5.9 39 130-179 140-179 (218)
164 PF08123 DOT1: Histone methyla 33.1 81 0.0018 26.8 4.6 99 77-187 44-166 (205)
165 PF02390 Methyltransf_4: Putat 31.7 19 0.00041 30.1 0.5 33 67-99 9-42 (195)
166 PF11899 DUF3419: Protein of u 31.3 82 0.0018 29.4 4.7 55 121-184 275-339 (380)
167 PRK11783 rlmL 23S rRNA m(2)G24 31.1 1.5E+02 0.0032 29.8 6.7 96 77-179 540-656 (702)
168 COG1092 Predicted SAM-dependen 28.8 2.5E+02 0.0053 26.5 7.4 153 16-181 162-338 (393)
169 PF03291 Pox_MCEL: mRNA cappin 26.1 43 0.00094 30.5 1.9 93 77-177 64-184 (331)
170 KOG1719 Dual specificity phosp 26.1 33 0.00071 28.9 1.0 37 122-168 110-152 (183)
171 COG3963 Phospholipid N-methylt 25.5 1.4E+02 0.0031 25.5 4.7 32 149-180 126-157 (194)
172 KOG2198 tRNA cytosine-5-methyl 24.8 1.1E+02 0.0023 28.9 4.2 39 158-196 275-313 (375)
173 PRK15001 SAM-dependent 23S rib 24.7 2.8E+02 0.006 25.9 6.9 86 84-182 54-145 (378)
174 COG0220 Predicted S-adenosylme 23.3 63 0.0014 28.0 2.3 22 78-99 51-73 (227)
175 COG5152 Uncharacterized conser 23.1 32 0.0007 30.0 0.4 23 105-127 141-163 (259)
176 TIGR00006 S-adenosyl-methyltra 23.1 98 0.0021 28.1 3.5 31 152-182 213-243 (305)
177 PF01564 Spermine_synth: Sperm 22.7 40 0.00087 29.2 1.0 90 83-179 85-191 (246)
178 PF03059 NAS: Nicotianamine sy 22.6 1.1E+02 0.0023 27.5 3.6 51 118-177 171-228 (276)
179 PF10726 DUF2518: Protein of f 22.4 2.1E+02 0.0045 23.5 4.9 36 131-175 78-113 (145)
180 PRK00050 16S rRNA m(4)C1402 me 21.5 1.1E+02 0.0024 27.6 3.5 35 151-185 208-242 (296)
181 COG2326 Uncharacterized conser 21.1 1.1E+02 0.0025 27.5 3.4 52 118-180 86-139 (270)
182 COG2813 RsmC 16S RNA G1207 met 20.8 2.2E+02 0.0047 26.0 5.2 39 130-179 35-73 (300)
183 PRK11933 yebU rRNA (cytosine-C 20.2 1.1E+02 0.0023 29.4 3.3 31 150-180 206-243 (470)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.82 E-value=1.2e-20 Score=160.20 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=108.6
Q ss_pred CcccccccCcchhhccCCcEEEEecccccCCCCCCCCCCCCCCCCCCCCCCCCCCcceeecC-ChHHHHHHHHHHCCCC-
Q 044941 22 DDWESVEEGPAEIIWQGNEIIIRKKKVRVPKKDANPLSKKEDVDRPTSNPLPPQSEAFADHQ-NAQQALETVAQQVPNF- 99 (202)
Q Consensus 22 ~~we~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~-g~G~ll~~ll~~~P~l- 99 (202)
+.|||+++.|+. ...|...|........ .... ...++|++. ..++|+| |.|.++.+++++||++
T Consensus 61 ~~~~~~~~~~~~------~~~f~~~m~~~~~~~~-~~~~--~~~~d~~~~-----~~vvDvGGG~G~~~~~l~~~~P~l~ 126 (241)
T PF00891_consen 61 PFFEYLEEDPEL------AKRFNAAMAEYSRLNA-FDIL--LEAFDFSGF-----KTVVDVGGGSGHFAIALARAYPNLR 126 (241)
T ss_dssp -HHHHHHCSHHH------HHHHHHHHHHHHHHHH-HHHH--HHHSTTTTS-----SEEEEET-TTSHHHHHHHHHSTTSE
T ss_pred cHHHhhhhChHH------HHHHHHHHHhhhhcch-hhhh--hccccccCc-----cEEEeccCcchHHHHHHHHHCCCCc
Confidence 489999998866 3345556653211111 0111 246788855 3699997 9999999999999997
Q ss_pred ----CccccccccchhhhccCCCCCCceeee--eec---CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCC
Q 044941 100 ----GTEHDKAHCPLHLKTGACRFGQRCSRV--HFY---PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALP 170 (202)
Q Consensus 100 ----dl~~d~~~~~~~~k~gacr~~dRcs~v--hff---P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~ 170 (202)
|+|.+.+.+.. .+|++++ +|| |. +|+|+|++ |||+|+|++|++||++++.+|+
T Consensus 127 ~~v~Dlp~v~~~~~~---------~~rv~~~~gd~f~~~P~-~D~~~l~~--------vLh~~~d~~~~~iL~~~~~al~ 188 (241)
T PF00891_consen 127 ATVFDLPEVIEQAKE---------ADRVEFVPGDFFDPLPV-ADVYLLRH--------VLHDWSDEDCVKILRNAAAALK 188 (241)
T ss_dssp EEEEE-HHHHCCHHH---------TTTEEEEES-TTTCCSS-ESEEEEES--------SGGGS-HHHHHHHHHHHHHHSE
T ss_pred ceeeccHhhhhcccc---------ccccccccccHHhhhcc-ccceeeeh--------hhhhcchHHHHHHHHHHHHHhC
Confidence 45555444443 6799999 576 78 99999999 8899999999999999999999
Q ss_pred CC--CEEEEeeeccCCCCCchHHhhhhhhccccC
Q 044941 171 AG--GKLIACEPVLPDDSNESQRTRALLEGDILL 202 (202)
Q Consensus 171 ~g--GrLlI~E~vl~~~~~~~~~~~~~~~mDm~M 202 (202)
|| |+|+|+|.++++.+...........+||.|
T Consensus 189 pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~m 222 (241)
T PF00891_consen 189 PGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNM 222 (241)
T ss_dssp ECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHH
Confidence 88 999999999999887644332334556554
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.67 E-value=9.5e-17 Score=145.14 Aligned_cols=108 Identities=27% Similarity=0.551 Sum_probs=84.9
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC-----CccccccccchhhhccCCCCCCceeee--eec---CCCcceeeeehhccccc
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF-----GTEHDKAHCPLHLKTGACRFGQRCSRV--HFY---PNKSCTLLIKNMYNVKF 146 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l-----dl~~d~~~~~~~~k~gacr~~dRcs~v--hff---P~~AD~ylLk~m~~~P~ 146 (202)
.+||+| |.|.++..++..||+. |++++...++.+. .| +..+ ++| |. +|+|+++.
T Consensus 180 ~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g-------V~~v~gdmfq~~P~-~daI~mkW------ 244 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG-------VEHVAGDMFQDTPK-GDAIWMKW------ 244 (342)
T ss_pred eEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC-------cceecccccccCCC-cCeEEEEe------
Confidence 489996 9999999999999996 4444444444432 11 3333 444 77 89999996
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCCC-chHHhhhhhhccccC
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-ESQRTRALLEGDILL 202 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~-~~~~~~~~~~mDm~M 202 (202)
|||||+|++|++||+||+++|+|+|+|+|+|+|++++.. .+-.++..+.+||+|
T Consensus 245 --iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm 299 (342)
T KOG3178|consen 245 --ILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLM 299 (342)
T ss_pred --ecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHH
Confidence 999999999999999999999999999999999996333 222367888999887
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.44 E-value=6.2e-13 Score=117.13 Aligned_cols=101 Identities=13% Similarity=0.251 Sum_probs=82.9
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----CccccccccchhhhccCCCCCCceeee--eec--C-CCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GTEHDKAHCPLHLKTGACRFGQRCSRV--HFY--P-NKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl~~d~~~~~~~~k~gacr~~dRcs~v--hff--P-~~AD~ylLk~m~~~P 145 (202)
..++|+| |.|.++..+++++|++ |.+...+.+...... .++.+|++++ +|| + ..+|+|++++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~--~gl~~rv~~~~~d~~~~~~~~~D~v~~~~----- 223 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE--KGVADRMRGIAVDIYKESYPEADAVLFCR----- 223 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHh--CCccceEEEEecCccCCCCCCCCEEEeEh-----
Confidence 4799997 9999999999999985 455555555554433 2678899998 565 1 3479999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCCC
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN 187 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~ 187 (202)
++|+|+++++.++|++++++|+|||+|+|+|.++++...
T Consensus 224 ---~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 224 ---ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN 262 (306)
T ss_pred ---hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence 889999999999999999999999999999999887654
No 4
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.83 E-value=9.6e-10 Score=96.05 Aligned_cols=88 Identities=36% Similarity=0.566 Sum_probs=75.4
Q ss_pred CCCCccccccccchhhhccCCCCCCceeeeeecCCCcceeeeehhccccccccc------CCCCHHHHHHHHHHHHhhCC
Q 044941 97 PNFGTEHDKAHCPLHLKTGACRFGQRCSRVHFYPNKSCTLLIKNMYNVKFQWVL------TTWTDDECKLIMENCYKALP 170 (202)
Q Consensus 97 P~ldl~~d~~~~~~~~k~gacr~~dRcs~vhffP~~AD~ylLk~m~~~P~k~VL------HdW~Dee~~~IL~~~~~AL~ 170 (202)
+.++++.++..|+|++|+++||+++||+.+|..|+.+.+++|+|||++|...+. ...+|++.+..+..||+++.
T Consensus 7 sifgtekdKv~c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f 86 (260)
T KOG2202|consen 7 SIFGTEKDKVNCSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVF 86 (260)
T ss_pred HHhcccccccccchHHhhcccccccHHHHhhcccccchHHHHHHHHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999984333 45789999999999999986
Q ss_pred -----CCCEE---EEeeeccCC
Q 044941 171 -----AGGKL---IACEPVLPD 184 (202)
Q Consensus 171 -----~gGrL---lI~E~vl~~ 184 (202)
+.|.| .|++++-+.
T Consensus 87 ~E~~~kygEiee~~Vc~Nl~~h 108 (260)
T KOG2202|consen 87 TELEDKYGEIEELNVCDNLGDH 108 (260)
T ss_pred HHHHHHhhhhhhhhhhcccchh
Confidence 46764 577776554
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.04 E-value=2.5e-05 Score=66.37 Aligned_cols=100 Identities=13% Similarity=0.208 Sum_probs=72.8
Q ss_pred cceeecC-ChHHHHHHHHHHC--CCC-----Cc-cccccccchhhhccCCCCCCceeee--eec--C-CCcceeeeehhc
Q 044941 77 EAFADHQ-NAQQALETVAQQV--PNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY--P-NKSCTLLIKNMY 142 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~--P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff--P-~~AD~ylLk~m~ 142 (202)
.+++|+| |.|.++..+++++ |+. |. +..+..|...++.. ....+++++ ++. | ..+|+++...
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~d~v~~~~-- 130 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEIKNASMVILNF-- 130 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCCCCCCEEeeec--
Confidence 4699998 9999999999874 553 33 34445555544322 234567776 332 3 3478777665
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCC
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 186 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~ 186 (202)
++|.+++++..++|++++..|+|||.+++.|.+.+++.
T Consensus 131 ------~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~ 168 (239)
T TIGR00740 131 ------TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT 168 (239)
T ss_pred ------chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCH
Confidence 78999999999999999999999999999998876544
No 6
>PRK06922 hypothetical protein; Provisional
Probab=97.98 E-value=1.4e-05 Score=78.58 Aligned_cols=99 Identities=12% Similarity=0.264 Sum_probs=69.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Ccccc-ccccchhhhccCCCCCCceeee--------eecC-CCcceeeeeh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GTEHD-KAHCPLHLKTGACRFGQRCSRV--------HFYP-NKSCTLLIKN 140 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl~~d-~~~~~~~~k~gacr~~dRcs~v--------hffP-~~AD~ylLk~ 140 (202)
..++|+| |.|.++..+++.+|+. |+... +..|...... .+.++.++ ++|| ...|+++...
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~----~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN----EGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh----cCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 5799998 9999999999999974 33222 2233222111 11233332 2354 4579999887
Q ss_pred hcccccccccCCC-----------CHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCCC
Q 044941 141 MYNVKFQWVLTTW-----------TDDECKLIMENCYKALPAGGKLIACEPVLPDDSN 187 (202)
Q Consensus 141 m~~~P~k~VLHdW-----------~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~ 187 (202)
++|+| ++++..++|++++..|+|||++++.|.++++++.
T Consensus 496 --------vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~~~ 545 (677)
T PRK06922 496 --------ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTEDKR 545 (677)
T ss_pred --------HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCchh
Confidence 55654 6789999999999999999999999998887543
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.87 E-value=5.6e-05 Score=64.97 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=71.8
Q ss_pred cceeecC-ChHHHHHHHHHH--CCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee--cC-CCcceeeeehhc
Q 044941 77 EAFADHQ-NAQQALETVAQQ--VPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF--YP-NKSCTLLIKNMY 142 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~--~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf--fP-~~AD~ylLk~m~ 142 (202)
..+.|+| |.|.++..+++. +|+. |. +..+..|...+... +...+++++ ++ +| ..+|++++..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~--~~~~~v~~~~~d~~~~~~~~~D~vv~~~-- 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAIENASMVVLNF-- 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEeCChhhCCCCCCCEEehhh--
Confidence 4799998 999999888884 5663 32 33344454443321 345578777 33 23 3478777665
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCC
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 186 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~ 186 (202)
++|-.++++...+|++++..|+|||.+++.|.+..++.
T Consensus 134 ------~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~ 171 (247)
T PRK15451 134 ------TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDA 171 (247)
T ss_pred ------HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcc
Confidence 77888888889999999999999999999998766544
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.87 E-value=3.3e-05 Score=57.12 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=68.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee-c----CCCcceeeeehhc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF-Y----PNKSCTLLIKNMY 142 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf-f----P~~AD~ylLk~m~ 142 (202)
.+++|+| |.|.++..+++.+|.. |. +.....+....+.. +..+|++++ ++ + +...|++++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~-~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDAEFDPDFLEPFDLVICSG-F 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCCHGGTTTSSCEEEEEECS-G
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECccccCcccCCCCCEEEECC-C
Confidence 4689998 9999999999988885 22 33344444444222 678899998 46 2 45689999887 3
Q ss_pred ccccccccCCCC-HHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 143 NVKFQWVLTTWT-DDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 143 ~~P~k~VLHdW~-Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
.+|.+- .++..++|+++++.|+|||+++|-+
T Consensus 80 ------~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 ------TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ------SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 334333 3789999999999999999998864
No 9
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.29 E-value=0.00073 Score=56.35 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=65.6
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee----cCCCcceeeeehhccc
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YPNKSCTLLIKNMYNV 144 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~~AD~ylLk~m~~~ 144 (202)
.++|+| |.|.++..+++.+|+. ++ +.....+...++ .+++.+++++. ++ +|...|+++..+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~--~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~---- 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR--ALGLQGRIRIFYRDSAKDPFPDTYDLVFGFE---- 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--hcCCCcceEEEecccccCCCCCCCCEeehHH----
Confidence 478998 8999999999999864 21 111223333332 23677788887 43 245589988887
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
++|.+.+ -..+|++++..|+|||++++.+.+.
T Consensus 76 ----~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 76 ----VIHHIKD--KMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred ----HHHhCCC--HHHHHHHHHHHcCCCCEEEEEEccc
Confidence 4466655 3689999999999999999998753
No 10
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.21 E-value=0.00016 Score=52.82 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=47.2
Q ss_pred eecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--eec---C-CCcceeeeehhccccc
Q 044941 80 ADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY---P-NKSCTLLIKNMYNVKF 146 (202)
Q Consensus 80 ~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff---P-~~AD~ylLk~m~~~P~ 146 (202)
.|+| |.|.++..+++++|.. |. +.....+...+.........++... +.+ + ...|++++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~------ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN------ 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh------
Confidence 3777 9999999999998874 32 3334455544433211122233333 222 2 3689999998
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEE
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKL 175 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrL 175 (202)
++|.+ ++....|++++..|+|||.|
T Consensus 75 --vl~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 --VLHHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --TTS----S-HHHHHHHHTTT-TSS-EE
T ss_pred --hHhhh--hhHHHHHHHHHHHcCCCCCC
Confidence 78888 66669999999999999986
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.13 E-value=0.0014 Score=57.13 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=65.4
Q ss_pred CcceeecC-ChHHHHHHHHHHCCC-C---Cc-cccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehhc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPN-F---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNMY 142 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~-l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m~ 142 (202)
...++|+| |.|.++..+++.+.. + |. +.....+.... ...+++++. ++ || ...|+++...
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~-----~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~-- 125 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN-----SDKNKIEFEANDILKKDFPENTFDMIYSRD-- 125 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc-----CcCCceEEEECCcccCCCCCCCeEEEEEhh--
Confidence 35799998 899988888876532 1 21 11112222211 123567766 33 34 3479998876
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
++|.++.++..++|++++..|+|||++++.|.....
T Consensus 126 ------~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~ 161 (263)
T PTZ00098 126 ------AILHLSYADKKKLFEKCYKWLKPNGILLITDYCADK 161 (263)
T ss_pred ------hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 556688888999999999999999999999987654
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.08 E-value=0.0017 Score=56.70 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=72.0
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-----C-ccccccccchhhhccCCCCCCceeee--e----ecCC-Ccceeeeehh
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-----G-TEHDKAHCPLHLKTGACRFGQRCSRV--H----FYPN-KSCTLLIKNM 141 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-----d-l~~d~~~~~~~~k~gacr~~dRcs~v--h----ffP~-~AD~ylLk~m 141 (202)
+..+.|++ |+|.++..+++..++. | .+..+..+....+.. +..+ |+++ + .||. ..|++.+..
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~--~~~~-i~fv~~dAe~LPf~D~sFD~vt~~f- 127 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK--GVQN-VEFVVGDAENLPFPDNSFDAVTISF- 127 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc--Cccc-eEEEEechhhCCCCCCccCEEEeee-
Confidence 35799996 9999999999999852 2 122233333333221 3333 8877 3 2574 469999998
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCCC
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN 187 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~ 187 (202)
-|++.+ +..+.|++++.-|+|||+++++|..-++...
T Consensus 128 -------glrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 128 -------GLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred -------hhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 678888 5678899999999999999999998886654
No 13
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.00 E-value=0.00042 Score=59.91 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCcceeecC-ChHHHHHHHHHHCCCCCccccccccchhhhccCCCCCC---ceeee------eecCC--Ccceeeeehhc
Q 044941 75 QSEAFADHQ-NAQQALETVAQQVPNFGTEHDKAHCPLHLKTGACRFGQ---RCSRV------HFYPN--KSCTLLIKNMY 142 (202)
Q Consensus 75 ~~~~~~d~~-g~G~ll~~ll~~~P~ldl~~d~~~~~~~~k~gacr~~d---Rcs~v------hffP~--~AD~ylLk~m~ 142 (202)
.-...+|.| |-|.+...+|.. .|+....++.++.|+..+.-.++. ++... +|-|. ..|++.+-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~Q--- 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQ--- 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEE---
T ss_pred CcceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEeh---
Confidence 345789997 999999988763 365555555555554332111222 22221 35563 58999887
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
|++-..+|++.++.|++|..+|.|+|-|+|=||+...+
T Consensus 130 -----W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 130 -----WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp -----S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred -----HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 48899999999999999999999999999999997765
No 14
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.98 E-value=0.0035 Score=58.12 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=66.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeee--eec----CCCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--HFY----PNKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--hff----P~~AD~ylLk~m~~ 143 (202)
..++|+| |+|.++..+++++|.. |.. ...+.|....+.......++|++. +.+ +...|+++.-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsN---- 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCN---- 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEEC----
Confidence 4799998 9999999999999985 322 233334444332211112477776 333 3346776652
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|+....|.++++.+.++++.++..|++||+++++-
T Consensus 306 -PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 306 -PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44235577888889999999999999999997773
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.93 E-value=0.002 Score=55.37 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=62.7
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCCCceeee--ee-----c-CCCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF-----Y-PNKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf-----f-P~~AD~ylLk~m~~ 143 (202)
.+++|+| |.|.++..+++...++ |. +..+..|....+. .++.++++++ +. + +...|++++.+
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~--~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~--- 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEA--KGVSDNMQFIHCAAQDIAQHLETPVDLILFHA--- 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh--cCCccceEEEEcCHHHHhhhcCCCCCEEEehh---
Confidence 5799998 9999999999875443 32 2333444443332 2455677765 21 2 34579999888
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
++|.+.+. .+.|++++..|+|||.|+++.
T Consensus 121 -----vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 121 -----VLEWVADP--KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred -----HHHhhCCH--HHHHHHHHHHcCCCeEEEEEE
Confidence 66766655 478999999999999998763
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.87 E-value=0.0029 Score=58.99 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=67.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-CccccccccchhhhccCCCCCCceeee--ee------cC-CCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-GTEHDKAHCPLHLKTGACRFGQRCSRV--HF------YP-NKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-dl~~d~~~~~~~~k~gacr~~dRcs~v--hf------fP-~~AD~ylLk~m~~~P 145 (202)
..++|+| |.|.++..+++...++ ++......+....+.. +...+++++ +. +| ...|+++...
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~----- 111 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLNISDGSVDLIFSNW----- 111 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccCCCCCCEEEEehhh-----
Confidence 4699998 9999999999876553 2221111111111111 122344544 22 34 3468888876
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
++|.+++++..++|++++..|+|||.+++.|++....
T Consensus 112 ---~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~ 148 (475)
T PLN02336 112 ---LLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS 148 (475)
T ss_pred ---hHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Confidence 7799999999999999999999999999999887654
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.83 E-value=0.0062 Score=50.39 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=65.5
Q ss_pred cceeecC-ChHHHHHHHHHHCCC-C-----Ccc-ccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN-F-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~-l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m 141 (202)
.+++|+| |.|.++..+++.+|. . |.. .....+...+.. .+...++++. ++ ++ ...|++++.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~- 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD--LGLSGNVEFVQGDAEALPFPDNSFDAVTIAF- 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc--cccccCeEEEecccccCCCCCCCccEEEEec-
Confidence 4799998 999999999999873 2 221 112223322211 1234456665 33 22 3479998887
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
++|.+++ ...+|++++..|++||+++++|...+..
T Consensus 130 -------~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~ 164 (239)
T PRK00216 130 -------GLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTN 164 (239)
T ss_pred -------ccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCc
Confidence 6788775 5678999999999999999999876543
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.82 E-value=0.0055 Score=50.89 Aligned_cols=96 Identities=8% Similarity=-0.053 Sum_probs=61.5
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Ccc-ccccccchhhhccCCCCCCceeeeee----cCCCcceeeeehhcccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTE-HDKAHCPLHLKTGACRFGQRCSRVHF----YPNKSCTLLIKNMYNVKFQ 147 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~-~d~~~~~~~~k~gacr~~dRcs~vhf----fP~~AD~ylLk~m~~~P~k 147 (202)
..++|+| |.|.++..++++.-++ |.. ..+..+....+.. ++.-+....++ ++...|+++...
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~fD~I~~~~------- 102 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARE--NLPLRTDAYDINAAALNEDYDFIFSTV------- 102 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHh--CCCceeEeccchhccccCCCCEEEEec-------
Confidence 4799998 9999999998753222 221 1122222222111 22211111121 244578888776
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 148 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 148 ~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
++|..++++...+++++++.|+|||.+++++..-
T Consensus 103 -~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 103 -VFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred -ccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 6788888899999999999999999988877554
No 19
>PLN03075 nicotianamine synthase; Provisional
Probab=96.81 E-value=0.0033 Score=56.64 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=62.8
Q ss_pred cceeecC-ChHHHHHHHH--HHCCC--C---Cccc-cccccchhhhccCCCCCCceeee--e---ecC--CCcceeeeeh
Q 044941 77 EAFADHQ-NAQQALETVA--QQVPN--F---GTEH-DKAHCPLHLKTGACRFGQRCSRV--H---FYP--NKSCTLLIKN 140 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll--~~~P~--l---dl~~-d~~~~~~~~k~gacr~~dRcs~v--h---ffP--~~AD~ylLk~ 140 (202)
.+++|+| |.|-+..-++ +.+|+ + |... ....+...++. ..++.+|++|. + ..+ ...|++++.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-DPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-ccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 4689998 5574444433 45676 2 3322 22334444422 13678899998 3 223 468888888
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
++|+|+.++-.++|+++++.|+|||.+++-
T Consensus 203 --------ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 --------ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred --------cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 679999999999999999999999998764
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.78 E-value=0.0037 Score=51.99 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=63.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Ccc-ccccccchhhhccCCCCCCceeee--ee----cCCCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF----YPNKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~~AD~ylLk~m~~~P 145 (202)
.+++|+| |.|.++..++++.-++ |.. ..++.+....+.. ++. .++.. ++ ++...|+++...
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~--~~~-~v~~~~~d~~~~~~~~~fD~I~~~~----- 103 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE--NLD-NLHTAVVDLNNLTFDGEYDFILSTV----- 103 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCC-cceEEecChhhCCcCCCcCEEEEec-----
Confidence 4799998 9999999998864332 322 1222333222211 221 23333 32 244579988887
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++|.+++++...++++++..|+|||++++++.+-.
T Consensus 104 ---~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~ 138 (197)
T PRK11207 104 ---VLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 138 (197)
T ss_pred ---chhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 67888889999999999999999999887775543
No 21
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.74 E-value=0.006 Score=49.97 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=63.2
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC------Cc-cccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF------GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l------dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m 141 (202)
..++|+| |.|.++..+++.+|.. |. +.....+.... ...+++++. ++ ++ ...|++++..
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~- 114 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKS-----ELPLNIEFIQADAEALPFEDNSFDAVTIAF- 114 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHh-----ccCCCceEEecchhcCCCCCCcEEEEEEee-
Confidence 4799997 9999999999999852 21 11122222222 123456655 22 33 3578888776
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
.+|...+ ...+|++++..|+|||++++++...+.
T Consensus 115 -------~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 115 -------GLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred -------eeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 6677665 568999999999999999999876543
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.66 E-value=0.011 Score=51.58 Aligned_cols=99 Identities=10% Similarity=0.064 Sum_probs=64.6
Q ss_pred CcceeecC-ChHHHHHHHHHHC-CC--C---Cc-cccccccchhhhccCCCCCCceeee--ee----cCC-Ccceeeeeh
Q 044941 76 SEAFADHQ-NAQQALETVAQQV-PN--F---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YPN-KSCTLLIKN 140 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~-P~--l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~-~AD~ylLk~ 140 (202)
...++|++ |+|.++..+++++ |+ + |. +..+..|............++++++ +. ||. ..|++++..
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 35799998 9999999888875 43 2 22 1222333222111011223466665 22 343 479998877
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
++|++.|. .+.|++++..|+|||+++++|..-++
T Consensus 154 --------~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 154 --------GLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred --------ccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 78888754 67899999999999999999976544
No 23
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.50 E-value=0.011 Score=52.60 Aligned_cols=92 Identities=11% Similarity=0.156 Sum_probs=59.0
Q ss_pred cceeecC-ChHHHHHHHHHHCCC-C-----Ccccc-ccccchhhhccCCCCCCceeee--eec-----CCC-----ccee
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN-F-----GTEHD-KAHCPLHLKTGACRFGQRCSRV--HFY-----PNK-----SCTL 136 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~-l-----dl~~d-~~~~~~~~k~gacr~~dRcs~v--hff-----P~~-----AD~y 136 (202)
..++|+| |+|.....++++.+. . |+..+ +..|...+... .-+.++..+ ++. |.. ..++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4699998 999999999998762 2 33222 23333322211 112344433 331 221 2345
Q ss_pred eeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 137 LIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 137 lLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
++.+ .+++++++++.++|++++..|.|||.+++-
T Consensus 143 ~~gs--------~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGS--------TIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred Eecc--------cccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5555 568999999999999999999999998763
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.40 E-value=0.0079 Score=47.40 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=66.3
Q ss_pred CcceeecC-ChHHHHHHHHH-HCCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee--cC----CCcceeeee
Q 044941 76 SEAFADHQ-NAQQALETVAQ-QVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF--YP----NKSCTLLIK 139 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~-~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf--fP----~~AD~ylLk 139 (202)
...++|+| |.|.++..+++ .+|.. |. +.....|....+.. ++. ++++. ++ +| ...|+++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~--~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL--GLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT--TST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc--ccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 35799998 99999999994 56653 32 23334444443322 333 67776 32 24 468999999
Q ss_pred hhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 140 NMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 140 ~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
. ++|...+.+ .+|+++++.|.++|.+++.+..
T Consensus 81 ~--------~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 G--------VLHHFPDPE--KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S--------TGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred C--------chhhccCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence 8 667877764 7899999999999999999877
No 25
>PLN02244 tocopherol O-methyltransferase
Probab=96.36 E-value=0.012 Score=53.26 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=63.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCC-C---Ccc-ccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN-F---GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~-l---dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m~~ 143 (202)
..++|+| |.|.++..+++++.. + |.. .....+....+. .++.++++++ +. || ...|+++...
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~--~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~--- 194 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAA--QGLSDKVSFQVADALNQPFEDGQFDLVWSME--- 194 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh--cCCCCceEEEEcCcccCCCCCCCccEEEECC---
Confidence 4699998 999999999998732 1 221 112223322221 2456678876 32 34 3468888766
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
++|.+.| ..+.|++++..|+|||++++++..-
T Consensus 195 -----~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 195 -----SGEHMPD--KRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred -----chhccCC--HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 6677765 3588999999999999999988643
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.35 E-value=0.014 Score=48.89 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=62.1
Q ss_pred cceeecC-ChHHHHHHHHHHC-CCC-----Cc-cccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQV-PNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~-P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m 141 (202)
..++|+| |.|.++..+++.+ |.. |. +.....+....+.. .+ +++++. +. +| ...|++++..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~- 122 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA--GL-HNVELVHGNAMELPFDDNSFDYVTIGF- 122 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc--CC-CceEEEEechhcCCCCCCCccEEEEec-
Confidence 5799998 9999999999886 442 22 22222333322221 22 456665 22 34 3479888876
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
.+|..++. .++|++++..|+|||++++++...+
T Consensus 123 -------~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 123 -------GLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred -------ccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCC
Confidence 56766654 4789999999999999999886543
No 27
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.35 E-value=0.002 Score=55.63 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=62.7
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC------Cc-cccccccchhhhccCCCCCCceeee--ee----cCC-Ccceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF------GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YPN-KSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l------dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~-~AD~ylLk~m 141 (202)
..+.|++ |+|.++..++++.+.- |. +..+..+....+.. +. .+|+++ +. ||. ..|++++..
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~--~~-~~i~~v~~da~~lp~~d~sfD~v~~~f- 124 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE--GL-QNIEFVQGDAEDLPFPDNSFDAVTCSF- 124 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT--T---SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh--CC-CCeeEEEcCHHHhcCCCCceeEEEHHh-
Confidence 4799997 9999999999876432 22 23333444333321 12 277776 32 463 469999887
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
.+|+..|. .+.|++++..|+|||+++|+|.-.++.
T Consensus 125 -------glrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 125 -------GLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp --------GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred -------hHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 67888774 458999999999999999999877753
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.30 E-value=0.012 Score=53.75 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=61.6
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehhc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNMY 142 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m~ 142 (202)
..++|+| |.|.++..+++.+|.. |. +.....+..... ..++++. +. |+ ...|+++..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~~-- 186 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSAG-- 186 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEcC--
Confidence 5799998 9999999999887653 21 111222222111 1234444 22 33 3479998887
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++|.|.|.+ ++|++++..|+|||++++++.+.+
T Consensus 187 ------~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 187 ------SIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred ------hhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCc
Confidence 678898765 689999999999999998876654
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.26 E-value=0.018 Score=51.89 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=61.3
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC--Cccccc-cccchhhhccCCCCCCceeee--ee--c--CCCcceeeeehhccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF--GTEHDK-AHCPLHLKTGACRFGQRCSRV--HF--Y--PNKSCTLLIKNMYNVKF 146 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l--dl~~d~-~~~~~~~k~gacr~~dRcs~v--hf--f--P~~AD~ylLk~m~~~P~ 146 (202)
..++|+| |+|.++..++++.+.. ++.... -.+.+.......+...++.++ ++ + +...|+++...
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~------ 197 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMG------ 197 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECC------
Confidence 4699998 9999999999988773 221111 111111100001123356665 21 2 45579998877
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
++|.+.|. ..+|++++..|+|||++++-..+++.+
T Consensus 198 --vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~ 232 (322)
T PRK15068 198 --VLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGD 232 (322)
T ss_pred --hhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCC
Confidence 66666543 468999999999999997765555543
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.24 E-value=0.013 Score=50.32 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=56.2
Q ss_pred cceeecC-ChHHHHHHHHHHCCCCCccccccccchhhhccCCCCCCceeee--e---ecC-CCcceeeeehhcccccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNFGTEHDKAHCPLHLKTGACRFGQRCSRV--H---FYP-NKSCTLLIKNMYNVKFQWV 149 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ldl~~d~~~~~~~~k~gacr~~dRcs~v--h---ffP-~~AD~ylLk~m~~~P~k~V 149 (202)
..++|+| |.|.++..+++.+|+... .-.+..+..++.+ +- .+++++ + +.| ...|+++... +
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v-~gvD~s~~~~~~a--~~-~~~~~~~~d~~~~~~~~~fD~v~~~~--------~ 98 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVI-EALDSSPEMVAAA--RE-RGVDARTGDVRDWKPKPDTDVVVSNA--------A 98 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEE-EEEECCHHHHHHH--Hh-cCCcEEEcChhhCCCCCCceEEEEeh--------h
Confidence 5799998 999999999999886310 1111111111111 00 023333 2 233 4589999988 5
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 150 LTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 150 LHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
+|...|. .++|++++..|+|||++++.
T Consensus 99 l~~~~d~--~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 99 LQWVPEH--ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhCCCH--HHHHHHHHHhCCCCcEEEEE
Confidence 5655543 67899999999999999875
No 31
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.19 E-value=0.0061 Score=42.76 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=51.8
Q ss_pred eecC-ChHHHHHHHHHHCCCC-----Cccc-cccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehhcccc
Q 044941 80 ADHQ-NAQQALETVAQQVPNF-----GTEH-DKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNMYNVK 145 (202)
Q Consensus 80 ~d~~-g~G~ll~~ll~~~P~l-----dl~~-d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m~~~P 145 (202)
.|+| |.|.++..+++. +.. |... .+..+....+.. ..++. ++ || ...|+++..+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~------~~~~~~~d~~~l~~~~~sfD~v~~~~----- 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE------GVSFRQGDAEDLPFPDNSFDVVFSNS----- 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS------TEEEEESBTTSSSS-TT-EEEEEEES-----
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc------CchheeehHHhCcccccccccccccc-----
Confidence 3676 889999999887 442 2221 123333333221 22233 32 34 4579999888
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
++|.+ ++..+++++++..|+|||++++
T Consensus 69 ---~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 ---VLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---HGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---ceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 55677 8889999999999999999975
No 32
>PRK08317 hypothetical protein; Provisional
Probab=96.11 E-value=0.024 Score=46.52 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=60.0
Q ss_pred cceeecC-ChHHHHHHHHHHC-CCC-----Ccccc-ccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQV-PNF-----GTEHD-KAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~-P~l-----dl~~d-~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m 141 (202)
.+++|+| |.|.++..+++.+ |.- |.... ...+.... ......+++. ++ ++ ...|+++..+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~----~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~- 95 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA----AGLGPNVEFVRGDADGLPFPDGSFDAVRSDR- 95 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHh----hCCCCceEEEecccccCCCCCCCceEEEEec-
Confidence 4799998 9999999999987 542 22111 12222211 1233455555 22 23 4579999888
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
++|.+.+. ..+|++++..|+|||.|++.+.
T Consensus 96 -------~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 96 -------VLQHLEDP--ARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred -------hhhccCCH--HHHHHHHHHHhcCCcEEEEEec
Confidence 66777664 5689999999999999998874
No 33
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.04 E-value=0.028 Score=51.28 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=61.3
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeeeeec---CCCcceeeeehhcccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRVHFY---PNKSCTLLIKNMYNVK 145 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~vhff---P~~AD~ylLk~m~~~P 145 (202)
...++|+| |.|.++..+++++|+. |.. ..+..+...++.. ++..++...+.+ +...|+++..-
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n--~l~~~~~~~D~~~~~~~~fDlIvsNP----- 269 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN--GLEGEVFASNVFSDIKGRFDMIISNP----- 269 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCEEEEcccccccCCCccEEEECC-----
Confidence 34799998 9999999999999974 322 2233333333322 232222211333 44467777643
Q ss_pred cccccCC---CCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 146 FQWVLTT---WTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 146 ~k~VLHd---W~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
.+|+ .+.+...++++.++..|++||+++++-+
T Consensus 270 ---PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 270 ---PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ---CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2354 4667789999999999999999976554
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.02 E-value=0.034 Score=51.94 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=62.2
Q ss_pred cceeecC-ChHHHHHHHHHHCCC-C---Ccc-ccccccchhhhccCCCCCCceeee--ee----cCC-Ccceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN-F---GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF----YPN-KSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~-l---dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~-~AD~ylLk~m~~ 143 (202)
..++|+| |.|.++..+++.+.. + |+. .....|... +.+...++++. ++ +|. ..|+++..+
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~----~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~--- 340 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER----AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD--- 340 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH----hhcCCCceEEEEcCcccCCCCCCCEEEEEECC---
Confidence 4799998 999998888876632 1 221 111122211 12445677776 43 344 479998887
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
+++.+.| -.++|++++..|+|||+|++.+.....
T Consensus 341 -----~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 341 -----TILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred -----cccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 4555554 358899999999999999999877654
No 35
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.01 E-value=0.024 Score=49.55 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=41.6
Q ss_pred Cceeee-e-e----cC-CCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 121 QRCSRV-H-F----YP-NKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 121 dRcs~v-h-f----fP-~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
+++++. + . +| ...|+++.+| ++|-+++++..++|++++..|+|||.+++-.
T Consensus 185 ~~V~F~~~dl~~~~~~~~~fD~I~crn--------vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 185 ERVRFAKHNLLAESPPLGDFDLIFCRN--------VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CcCEEeeccCCCCCCccCCCCEEEech--------hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 466666 2 2 23 3479999999 7899999999999999999999999998744
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.99 E-value=0.028 Score=46.29 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=57.7
Q ss_pred cceeecC-ChHHHHHHHHHHCCCCC-ccccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehhcccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNFG-TEHDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNMYNVKFQ 147 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ld-l~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m~~~P~k 147 (202)
..++|+| |.|.++..+++.+|+.. +..| .++...+...-+..++++++ ++ +| ...|+++..+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~------- 106 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALD--ISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL------- 106 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEe--ChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-------
Confidence 5699998 99999999999988642 1111 11111111000222355554 22 23 4479998887
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 148 WVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 148 ~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
++|.-.| ..++|++++..|++||.+++.+.
T Consensus 107 -~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 107 -ALQWCDD--LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred -hhhhccC--HHHHHHHHHHHcCCCcEEEEEeC
Confidence 5554333 45799999999999999988753
No 37
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.97 E-value=0.0029 Score=54.14 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=63.2
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCCCceeee--e---ecC-CCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFGQRCSRV--H---FYP-NKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--h---ffP-~~AD~ylLk~m~~~P 145 (202)
.++.++| |.|.|...|+.+.-.+ |. +..+..+.... +-...+++. + +.| ...|+++++-
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl-----~~~~~V~~~~~dvp~~~P~~~FDLIV~SE----- 114 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERL-----AGLPHVEWIQADVPEFWPEGRFDLIVLSE----- 114 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHT-----TT-SSEEEEES-TTT---SS-EEEEEEES-----
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhc-----CCCCCeEEEECcCCCCCCCCCeeEEEEeh-----
Confidence 4688888 9999999999987554 22 33334444332 222356666 2 456 4589999998
Q ss_pred cccccCCCCH-HHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 146 FQWVLTTWTD-DECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 146 ~k~VLHdW~D-ee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
|++-+++ ++....++++..+|.|||.||+...
T Consensus 115 ---VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 ---VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ----GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ---HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7899986 7889999999999999999999875
No 38
>PRK04457 spermidine synthase; Provisional
Probab=95.97 E-value=0.024 Score=49.63 Aligned_cols=94 Identities=12% Similarity=0.215 Sum_probs=62.4
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--e---ec---CCCcceeeeeh
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--H---FY---PNKSCTLLIKN 140 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--h---ff---P~~AD~ylLk~ 140 (202)
...+.|+| |.|.++..+++.+|.. ++ +.+...|..++... ...+|++++ | ++ |...|++++-.
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 34689998 8899999999999984 33 44455566555322 335688777 4 22 55689998753
Q ss_pred hcccccccccCCCCHH-HHHHHHHHHHhhCCCCCEEEEe
Q 044941 141 MYNVKFQWVLTTWTDD-ECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 141 m~~~P~k~VLHdW~De-e~~~IL~~~~~AL~~gGrLlI~ 178 (202)
|. -...... ...++|++|++.|.|||.+++.
T Consensus 145 -~~------~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FD------GEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CC------CCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 21 1112211 1478999999999999998873
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.83 E-value=0.03 Score=47.21 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=59.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc---cccccccchhhhccCCCCCCceeeee---ecC-CCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT---EHDKAHCPLHLKTGACRFGQRCSRVH---FYP-NKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl---~~d~~~~~~~~k~gacr~~dRcs~vh---ffP-~~AD~ylLk~m~~~P 145 (202)
.+++|+| |.|.++..+++..|.. ++ +.....|..... + .++...+ .++ ...|+++..+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~--~~~~~~d~~~~~~~~sfD~V~~~~----- 113 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----N--INIIQGSLFDPFKDNFFDLVLTKG----- 113 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----C--CcEEEeeccCCCCCCCEEEEEECC-----
Confidence 4799998 9999999999887763 21 122222222111 0 1111112 344 4579999887
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++|.+++++..+.+++++..+ ++.++|.|...+
T Consensus 114 ---vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 ---VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ---hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 777788889999999999976 567888887544
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.83 E-value=0.029 Score=49.32 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=61.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCCCceeee--ee----cCCCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YPNKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~~AD~ylLk~m~~~P 145 (202)
.+++|+| |.|.++..+++..-++ |. +.....+....+.. ++ .++.. ++ ++...|+++...
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~--~l--~v~~~~~D~~~~~~~~~fD~I~~~~----- 192 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKE--NL--NIRTGLYDINSASIQEEYDFILSTV----- 192 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CC--ceEEEEechhcccccCCccEEEEcc-----
Confidence 3799998 9999999988753222 22 11122222222211 22 34433 32 245579888877
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
++|-.++++...+|+++++.|+|||.++++..+-
T Consensus 193 ---vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~ 226 (287)
T PRK12335 193 ---VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMD 226 (287)
T ss_pred ---hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 6788888999999999999999999988776543
No 41
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.81 E-value=0.038 Score=47.13 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=55.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeee--e---ecC-CCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--H---FYP-NKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--h---ffP-~~AD~ylLk~m~~ 143 (202)
..++|+| |.|.++..+++++|.. |.. .....+... ..++++. + +.| ...|+++...
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~~~~~fD~v~~~~--- 101 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQPPQALDLIFANA--- 101 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccCCCCCccEEEEcc---
Confidence 4799998 9999999999998863 221 111222211 1234444 3 223 4578888876
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
++|...| -.++|++++..|+|||.+++.
T Consensus 102 -----~l~~~~d--~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 102 -----SLQWLPD--HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -----ChhhCCC--HHHHHHHHHHhcCCCcEEEEE
Confidence 5564444 357999999999999998774
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=95.66 E-value=0.047 Score=49.37 Aligned_cols=97 Identities=11% Similarity=0.049 Sum_probs=60.0
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC--Cccccccc-cch-hhhccCCCCCCceeee--e--ecC--CCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF--GTEHDKAH-CPL-HLKTGACRFGQRCSRV--H--FYP--NKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l--dl~~d~~~-~~~-~~k~gacr~~dRcs~v--h--ffP--~~AD~ylLk~m~~~P 145 (202)
..++|+| |+|.++..++...+.. |+...... +.+ ..+. ......++.+. + .+| ...|+++...
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~-~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~g----- 196 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRK-LLDNDKRAILEPLGIEQLHELYAFDTVFSMG----- 196 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHH-HhccCCCeEEEECCHHHCCCCCCcCEEEEcc-----
Confidence 4689998 9999999998887762 22111111 110 0100 00112344443 2 122 3579998877
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
++|.+.+. ...|++++..|+|||+|++...+++.
T Consensus 197 ---vL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 197 ---VLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred ---hhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 66666544 56899999999999999988776654
No 43
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.046 Score=49.44 Aligned_cols=100 Identities=11% Similarity=0.049 Sum_probs=65.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCCC-----cc-ccccccchhhhccCCCCCCceeee-eec-CCCcceeeeehhccccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNFG-----TE-HDKAHCPLHLKTGACRFGQRCSRV-HFY-PNKSCTLLIKNMYNVKF 146 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~ld-----l~-~d~~~~~~~~k~gacr~~dRcs~v-hff-P~~AD~ylLk~m~~~P~ 146 (202)
...++|+| |.|.+...+++.+|+.. .. ..++.++...+.. ++...+-+. +.| +. .+ -+-.|+.||+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N--~~~~~~v~~s~~~~~v-~~--kfd~IisNPP 233 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN--GVENTEVWASNLYEPV-EG--KFDLIISNPP 233 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc--CCCccEEEEecccccc-cc--cccEEEeCCC
Confidence 34799999 99999999999999742 22 2233444454433 333333333 334 32 11 2333344577
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
.-..++-.+.=+.+|++..++.|.+||+|.|+=+
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4355677788889999999999999999977655
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.40 E-value=0.048 Score=44.52 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=56.9
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee---cCCCcceeeeehhcc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF---YPNKSCTLLIKNMYN 143 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf---fP~~AD~ylLk~m~~ 143 (202)
...++|+| |+|.++..+++++|+. |. +.....+....+.. ++ .++++. +. ++...|++++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~--~~-~~i~~~~~d~~~~~~~~~D~v~~~~--- 105 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF--GC-GNIDIIPGEAPIELPGKADAIFIGG--- 105 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh--CC-CCeEEEecCchhhcCcCCCEEEECC---
Confidence 34799998 9999999999999874 22 12223333332211 22 356665 22 245578888765
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
..+. ...+++.++..|++||++++...
T Consensus 106 -----~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 106 -----SGGN-----LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred -----CccC-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 2222 35688999999999999977543
No 45
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.21 E-value=0.03 Score=43.26 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=58.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCCCccccccccchhhhccCCCCCCceeeeee------c-CCCcceeeeehhcccccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNFGTEHDKAHCPLHLKTGACRFGQRCSRVHF------Y-PNKSCTLLIKNMYNVKFQ 147 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~ldl~~d~~~~~~~~k~gacr~~dRcs~vhf------f-P~~AD~ylLk~m~~~P~k 147 (202)
...++|+| |.|.++..+.+....+ ......+...+. .......| + +...|+++..+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~---~g~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~fD~i~~~~------- 86 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGFEV---TGVDISPQMIEK------RNVVFDNFDAQDPPFPDGSFDLIICND------- 86 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTSEE---EEEESSHHHHHH------TTSEEEEEECHTHHCHSSSEEEEEEES-------
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEE---EEEECCHHHHhh------hhhhhhhhhhhhhhccccchhhHhhHH-------
Confidence 35799998 8899998886654332 111111111111 01111111 2 46689999998
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 148 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 148 ~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++|...| ..+.|+++++.|+|||.+++.+....
T Consensus 87 -~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 87 -VLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp -SGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred -HHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 6777774 78999999999999999999987654
No 46
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.19 E-value=0.086 Score=45.45 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=60.5
Q ss_pred CcceeecC-ChHHHHHHHHHHC-CC--C---Cc-cccccccchhhhccCCCCCCceeee--ee----cCC-Ccceeeeeh
Q 044941 76 SEAFADHQ-NAQQALETVAQQV-PN--F---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YPN-KSCTLLIKN 140 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~-P~--l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~-~AD~ylLk~ 140 (202)
...++|+| |.|..+..+++.+ |. + |. +..+..+....... ++ +++++. ++ +|. ..|+++...
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--GY-TNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--CC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35799998 8888777777654 33 1 32 22233344333221 22 356665 22 233 468887665
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
++|.+.+. .++|++++..|+|||++++.+.+...
T Consensus 155 --------v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 155 --------VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred --------cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 66666543 46899999999999999999987654
No 47
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=95.10 E-value=0.092 Score=47.05 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=65.3
Q ss_pred CCCCCcceeec-CChHHHHHHHHHHCCCC-----------Cc-cccccccchhhhccCCCCCC--ceeee--e----ecC
Q 044941 72 LPPQSEAFADH-QNAQQALETVAQQVPNF-----------GT-EHDKAHCPLHLKTGACRFGQ--RCSRV--H----FYP 130 (202)
Q Consensus 72 ~~p~~~~~~d~-~g~G~ll~~ll~~~P~l-----------dl-~~d~~~~~~~~k~gacr~~d--Rcs~v--h----ffP 130 (202)
.|+.++.++|+ ||+|.++-.+++..++- |+ ++.+..+....+.. .+.+ |..++ + -||
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~--~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR--PLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc--CCCcCCceEEEeCCcccCCCC
Confidence 34456899999 49999999999977662 21 12222222222111 2322 34554 2 367
Q ss_pred C-CcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 131 N-KSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 131 ~-~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
. ..|.|.+.. =+.+|+|- .+-|++.|..|+|||++.++|+-
T Consensus 175 d~s~D~yTiaf--------GIRN~th~--~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 175 DDSFDAYTIAF--------GIRNVTHI--QKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CCcceeEEEec--------ceecCCCH--HHHHHHHHHhcCCCcEEEEEEcc
Confidence 4 479999987 66788875 57899999999999999988864
No 48
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.01 E-value=0.057 Score=48.96 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=57.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-Ccc---ccccccchhhhccCCCCCCceeee--ee----cC-CCcceeeeehhccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-GTE---HDKAHCPLHLKTGACRFGQRCSRV--HF----YP-NKSCTLLIKNMYNV 144 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-dl~---~d~~~~~~~~k~gacr~~dRcs~v--hf----fP-~~AD~ylLk~m~~~ 144 (202)
..++|+| |.|.++..+++..-++ ++. .....+....... ....++++. ++ ++ ...|+++...
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~---- 206 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADEGRKFDAVLSLE---- 206 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhccCCCCEEEEhh----
Confidence 4799998 8999888887632222 221 1122222222111 223456665 21 23 3589999988
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
++|.+.|.. ..|+.++..|+|||.+++..
T Consensus 207 ----vLeHv~d~~--~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 207 ----VIEHVANPA--EFCKSLSALTIPNGATVLST 235 (322)
T ss_pred ----HHHhcCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 777777653 79999999999999998775
No 49
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.01 E-value=0.09 Score=35.93 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=53.2
Q ss_pred eeecC-ChHHHHHHHHHHCCCC-----Ccccc-ccccchhhhccCCCCCCceeee--ee------cCCCcceeeeehhcc
Q 044941 79 FADHQ-NAQQALETVAQQVPNF-----GTEHD-KAHCPLHLKTGACRFGQRCSRV--HF------YPNKSCTLLIKNMYN 143 (202)
Q Consensus 79 ~~d~~-g~G~ll~~ll~~~P~l-----dl~~d-~~~~~~~~k~gacr~~dRcs~v--hf------fP~~AD~ylLk~m~~ 143 (202)
++|+| |.|.++..+++ .+.. |.... ...+.... ......++++. ++ .+..+|+++...+
T Consensus 2 ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-- 75 (107)
T cd02440 2 VLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAA---AALLADNVEVLKGDAEELPPEADESFDVIISDPP-- 75 (107)
T ss_pred eEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHH---hcccccceEEEEcChhhhccccCCceEEEEEccc--
Confidence 67887 88988888887 3332 22111 11111000 01223355555 22 1345788888873
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
++.+ .+....+++.+...++++|.+++.
T Consensus 76 ------~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 ------LHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ------eeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3444 778999999999999999998765
No 50
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.75 E-value=0.14 Score=37.81 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=53.3
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeee--ee---c---CCCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF---Y---PNKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf---f---P~~AD~ylLk~m 141 (202)
..++|+| |.|.++..+++++|+. |.. .-...+....+. +++. ++.++ +. . +...|.+++..
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~- 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR--FGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG- 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH--hCCC-ceEEEeccccccChhhcCCCCEEEECC-
Confidence 4799998 9999999999999872 221 112223322221 1222 45544 21 1 33467777654
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
......++++.+++.|+|||.+++
T Consensus 97 ------------~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 97 ------------SGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ------------cchhHHHHHHHHHHHcCCCCEEEE
Confidence 223446999999999999999865
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.63 E-value=0.072 Score=44.49 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCcceeecC-ChHHHHHHHHHHCCCC---Cccc---cccccchhhhccCCCCCCceeee--ee-------
Q 044941 65 DRPTSNPLPPQSEAFADHQ-NAQQALETVAQQVPNF---GTEH---DKAHCPLHLKTGACRFGQRCSRV--HF------- 128 (202)
Q Consensus 65 ~~~~~~~~~p~~~~~~d~~-g~G~ll~~ll~~~P~l---dl~~---d~~~~~~~~k~gacr~~dRcs~v--hf------- 128 (202)
...|....+.....++|+| |.|.++..+++.+|+. ++.. ....+....+.. ++ .+++++ +.
T Consensus 30 ~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~--~~-~~v~~~~~d~~~~l~~~ 106 (202)
T PRK00121 30 PLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE--GL-TNLRLLCGDAVEVLLDM 106 (202)
T ss_pred CCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--CC-CCEEEEecCHHHHHHHH
Confidence 4467766666556799998 9999999999998873 2222 222233222221 22 345554 22
Q ss_pred cC-CCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 129 YP-NKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 129 fP-~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
++ ...|++++-. ..|...-.|+-.......+|++++..|+|||.+++..
T Consensus 107 ~~~~~~D~V~~~~--~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 107 FPDGSLDRIYLNF--PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cCccccceEEEEC--CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 33 3467776542 1111000022122235788999999999999998764
No 52
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=94.58 E-value=0.072 Score=47.14 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=65.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC---Cc---cccccccchhhhccCCCCCCceeee--ee--cCCCcceeeeehhccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF---GT---EHDKAHCPLHLKTGACRFGQRCSRV--HF--YPNKSCTLLIKNMYNV 144 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l---dl---~~d~~~~~~~~k~gacr~~dRcs~v--hf--fP~~AD~ylLk~m~~~ 144 (202)
+..+.|+| |-|.++..++++| .. ++ +.-...|....+. .++.+++++. ++ ++...|.++-=.|+
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~--~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~-- 137 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIRE--AGLEDRVEVRLQDYRDLPGKFDRIVSIEMF-- 137 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHC--STSSSTEEEEES-GGG---S-SEEEEESEG--
T ss_pred CCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHh--cCCCCceEEEEeeccccCCCCCEEEEEech--
Confidence 45899998 9999999999998 32 21 1112223333332 3788898887 54 35568887766654
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
.....++....|++++..|+|||++++........
T Consensus 138 ------Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 138 ------EHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp ------GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred ------hhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 45677888999999999999999999887776543
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.52 E-value=0.11 Score=43.11 Aligned_cols=89 Identities=7% Similarity=0.046 Sum_probs=58.0
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCCCceeee--ee--cCCCcceeeeehhcccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF--YPNKSCTLLIKNMYNVKFQ 147 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf--fP~~AD~ylLk~m~~~P~k 147 (202)
..++|+| |.|.++..+++..+++ |. +.....+...+.. .+..+++++. ++ .....|+++..+
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~fD~v~~~~------- 135 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE--AGLAGNITFEVGDLESLLGRFDTVVCLD------- 135 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh--cCCccCcEEEEcCchhccCCcCEEEEcc-------
Confidence 4799998 9999999999876653 22 1222333333321 1333567666 32 134479988887
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCEEE
Q 044941 148 WVLTTWTDDECKLIMENCYKALPAGGKLI 176 (202)
Q Consensus 148 ~VLHdW~Dee~~~IL~~~~~AL~~gGrLl 176 (202)
++|.|++++...++++++..+. +|-++
T Consensus 136 -~l~~~~~~~~~~~l~~l~~~~~-~~~~i 162 (230)
T PRK07580 136 -VLIHYPQEDAARMLAHLASLTR-GSLIF 162 (230)
T ss_pred -hhhcCCHHHHHHHHHHHHhhcC-CeEEE
Confidence 7778999999999999988653 43333
No 54
>PRK06202 hypothetical protein; Provisional
Probab=94.34 E-value=0.13 Score=43.45 Aligned_cols=89 Identities=9% Similarity=0.030 Sum_probs=53.9
Q ss_pred cceeecC-ChHHHHHHHHHHC----CCC-----Cc-cccccccchhhhccCCCCCCceeee--ee--c-CCCcceeeeeh
Q 044941 77 EAFADHQ-NAQQALETVAQQV----PNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF--Y-PNKSCTLLIKN 140 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~----P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf--f-P~~AD~ylLk~ 140 (202)
.+++|+| |.|.++..+++.. |+. |. +.....|..... ..+-++... +. + +...|+++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~----~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR----RPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc----cCCCeEEEEecccccccCCCccEEEECC
Confidence 5799998 9999888887643 321 22 111222222111 011122222 21 2 34589999987
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
++|..+|++..++|++++..++ |.+++.|
T Consensus 138 --------~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 138 --------FLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred --------eeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 7899999998999999998876 5555554
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.29 E-value=0.031 Score=40.94 Aligned_cols=84 Identities=12% Similarity=0.155 Sum_probs=54.0
Q ss_pred eeecC-ChHHHHHHHHHHC---CC--C---Cc-cccccccchhhhccCCCCCCceeee--ee--c--C-CCcceeeeehh
Q 044941 79 FADHQ-NAQQALETVAQQV---PN--F---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF--Y--P-NKSCTLLIKNM 141 (202)
Q Consensus 79 ~~d~~-g~G~ll~~ll~~~---P~--l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf--f--P-~~AD~ylLk~m 141 (202)
++|++ |.|..+..+++.+ |+ + |. +..+..+....+.. +. +++++ ++ + + ...|+++....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~--~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED--GP--KVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT--TT--TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc--CC--ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 46887 9999999999987 32 2 32 22233344433321 12 55555 32 2 2 24799988542
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCC
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGG 173 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gG 173 (202)
++|.+++++..++|+++++-++|||
T Consensus 77 -------~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 -------SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -------GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -------ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4566999999999999999999887
No 56
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.22 E-value=0.14 Score=43.48 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=59.5
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Ccccccccc---chhhhccCCCCCCceeee--e---ecCC--Ccceeeeehhc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTEHDKAHC---PLHLKTGACRFGQRCSRV--H---FYPN--KSCTLLIKNMY 142 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~~d~~~~---~~~~k~gacr~~dRcs~v--h---ffP~--~AD~ylLk~m~ 142 (202)
..+.|+| |+|.+..+++...|+. .++.+.... ..... +.+ .+.+..+ + .++. ..|.+++..
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~--~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG-- 110 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAA--RFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG-- 110 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHH--HhC-CCcEEEEeccchHhhcCCCCCCEEEECC--
Confidence 4699998 9999999999999984 333322111 11111 113 4567776 2 3321 589999987
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
+ .....||+.|.+.|++||||++.=.
T Consensus 111 -----------g-~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 111 -----------G-GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred -----------C-CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 2 6778899999999999999976543
No 57
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.22 E-value=0.11 Score=42.18 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=58.2
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeee--eec---C-CCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--HFY---P-NKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--hff---P-~~AD~ylLk~m~~ 143 (202)
..++|+| |+|.++..+++.+|+. |.. .....+....+.. ++.+ +++. +.+ + ...|+++.-
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n--~~~~-v~~~~~d~~~~~~~~~fD~Iv~N---- 105 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN--GLEN-VEVVQSDLFEALPDGKFDLIVSN---- 105 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT--TCTT-EEEEESSTTTTCCTTCEEEEEE-----
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--Cccc-cccccccccccccccceeEEEEc----
Confidence 4699998 9999999999999993 332 2233333444332 3444 6665 443 3 457777543
Q ss_pred cccccccCCCC---HHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 144 VKFQWVLTTWT---DDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 144 ~P~k~VLHdW~---Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
|+ +|.=. .+-..++++.+...|.+||+++++
T Consensus 106 -PP---~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 106 -PP---FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp ------SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -cc---hhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 33 23332 245788999999999999999653
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=93.88 E-value=0.097 Score=43.32 Aligned_cols=90 Identities=12% Similarity=0.180 Sum_probs=52.7
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cccccc---cccchhhhccCCCCCCceeee--ee-------cCC-Ccceeeee
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTEHDK---AHCPLHLKTGACRFGQRCSRV--HF-------YPN-KSCTLLIK 139 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~~d~---~~~~~~~k~gacr~~dRcs~v--hf-------fP~-~AD~ylLk 139 (202)
..++|+| |.|.++..+++++|+. ++.... ..|....+. .++. +++++ +. +|. ..|.+++-
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--LGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--hCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 3699998 9999999999999984 333222 222222221 1233 56666 21 233 23444332
Q ss_pred hhcccccccccCCCCHHH-------HHHHHHHHHhhCCCCCEEEEe
Q 044941 140 NMYNVKFQWVLTTWTDDE-------CKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 140 ~m~~~P~k~VLHdW~Dee-------~~~IL~~~~~AL~~gGrLlI~ 178 (202)
. | ..|.... ...+|+.++..|+|||.|++.
T Consensus 95 ~----p-----dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 F----P-----DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred C----C-----CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 1 1 1233221 256899999999999998664
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=93.79 E-value=0.16 Score=41.11 Aligned_cols=103 Identities=10% Similarity=0.056 Sum_probs=58.3
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Ccccc-ccccchhhhccCCCCCCceeee--ee---cCCCcceeeeehhcc-cc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTEHD-KAHCPLHLKTGACRFGQRCSRV--HF---YPNKSCTLLIKNMYN-VK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~~d-~~~~~~~~k~gacr~~dRcs~v--hf---fP~~AD~ylLk~m~~-~P 145 (202)
..++|+| |+|.++..+++..+++ |.... ...+....+.. +. .+++. +. ++...|+++..--|. .+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLN--NV--GLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc--CC--ceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 3699998 9999999999988753 22221 22222222211 11 34444 33 244578877654331 00
Q ss_pred cccccCCCC----------HHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 146 FQWVLTTWT----------DDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 146 ~k~VLHdW~----------Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
...-.++|. .+-..++|+.+++.|+|||+++++..-..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 000011221 11256789999999999999999886554
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=93.59 E-value=0.26 Score=41.20 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=57.0
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeee--ee--c--CCCcceeeeehhc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF--Y--PNKSCTLLIKNMY 142 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf--f--P~~AD~ylLk~m~ 142 (202)
...++|+| |.|.++..+++++|.. |.. .....+....+.. ++.+ ++++ +. + ....|+++...+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~--~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL--GLKN-VTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--CCCC-EEEEeccHhhCCCCCCccEEEEccc-
Confidence 45799998 9999999999988874 221 2223333333222 3333 6666 22 2 234788876531
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
.....+++.+++.|+|||++++++.
T Consensus 122 -------------~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 -------------ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -------------cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2345788999999999999998863
No 61
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=93.41 E-value=0.15 Score=42.27 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=56.4
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-Ccc---ccccccchhhhccCCCCCCceeee--ee--c----CCCcceeeeehhc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-GTE---HDKAHCPLHLKTGACRFGQRCSRV--HF--Y----PNKSCTLLIKNMY 142 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-dl~---~d~~~~~~~~k~gacr~~dRcs~v--hf--f----P~~AD~ylLk~m~ 142 (202)
...++|+| |.|.++..+++..+++ ++. .....+...... .+. .++++. ++ + +...|++++.+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~-- 120 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK--DPL-LKIEYRCTSVEDLAEKGAKSFDVVTCME-- 120 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH--cCC-CceEEEeCCHHHhhcCCCCCccEEEehh--
Confidence 35799997 8899998888766553 211 112222222211 111 135554 21 1 24589999887
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
++|...+. ..+|++++..|++||.+++..
T Consensus 121 ------~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 121 ------VLEHVPDP--QAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ------HHHhCCCH--HHHHHHHHHhcCCCcEEEEEe
Confidence 45666544 478999999999999988765
No 62
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.81 E-value=0.47 Score=42.53 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=58.7
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee---cCC-Ccceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF---YPN-KSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf---fP~-~AD~ylLk~m~~ 143 (202)
..++|++ |+|.++..+++.+|+. |. +.....+....+.. ++.+|++++ ++ +|. ..|+++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~--~l~~~i~~~~~D~~~~l~~~~fDlIvsN---- 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH--GLEDRVTLIESDLFAALPGRRYDLIVSN---- 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCCcEEEEECchhhhCCCCCccEEEEC----
Confidence 4699997 9999999999999974 32 22233344443322 456778877 43 343 46777642
Q ss_pred ccccc-----------ccCC---------CCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 144 VKFQW-----------VLTT---------WTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 144 ~P~k~-----------VLHd---------W~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
|+.. +.|+ -..+-..++++++.+.|+|||++++
T Consensus 209 -PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 209 -PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred -CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2210 1110 0124457899999999999998865
No 63
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=92.56 E-value=0.21 Score=40.24 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=35.9
Q ss_pred CcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 132 KSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 132 ~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
..|++++.. ++|.|.| -.+.|++++..|+|||+++|+|.-.+.
T Consensus 44 ~fD~v~~~~--------~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 44 EFDAVTMGY--------GLRNVVD--RLRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred CeeEEEecc--------hhhcCCC--HHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 469998876 7899965 468999999999999999999976543
No 64
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=92.16 E-value=0.73 Score=40.73 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=57.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--eec---CC-Ccceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY---PN-KSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff---P~-~AD~ylLk~m~~ 143 (202)
..++|++ |+|.++..+++.+|+. |. +.....+....+.. ++.++++++ +++ |. ..|+++.-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--~~~~~i~~~~~D~~~~~~~~~fD~Iv~N---- 196 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--GLEDRVTLIQSDLFAALPGRKYDLIVSN---- 196 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhhccCCCCccEEEEC----
Confidence 4699997 9999999999999874 22 22233334333322 455678877 433 43 35766542
Q ss_pred ccccc----------ccCCC----------CHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 144 VKFQW----------VLTTW----------TDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 144 ~P~k~----------VLHdW----------~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|+.. ..+.. ..+...++++.+.+.|.+||+++ +|
T Consensus 197 -PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~-~e 250 (284)
T TIGR03533 197 -PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV-VE 250 (284)
T ss_pred -CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE-EE
Confidence 2210 00100 11345788999999999999875 44
No 65
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=91.88 E-value=0.75 Score=38.51 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=54.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Ccc---ccccccchhhhccCCCCCCceeee--ee---cC-CCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTE---HDKAHCPLHLKTGACRFGQRCSRV--HF---YP-NKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~---~d~~~~~~~~k~gacr~~dRcs~v--hf---fP-~~AD~ylLk~m~~ 143 (202)
..++|++ |+|.++..+++.+|+. +.. .....|....+.. ++. ++.+. ++ ++ ...|+++.---|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL--GLD-NVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-eEEEEECchhccCcCCceeEEEECCCCC
Confidence 4799998 9999999999998874 221 2222333332211 232 45555 33 33 3467765421110
Q ss_pred cccccccCCCCH------------------HHHHHHHHHHHhhCCCCCEEEEe
Q 044941 144 VKFQWVLTTWTD------------------DECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 144 ~P~k~VLHdW~D------------------ee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
. ....|.++. +....+++++++.|++||.+++.
T Consensus 166 ~--~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 166 P--EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred c--hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 0 001122221 22357899999999999998763
No 66
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.68 E-value=0.14 Score=43.24 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=38.8
Q ss_pred CCceeee-e-ec-----CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 120 GQRCSRV-H-FY-----PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 120 ~dRcs~v-h-ff-----P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
..+|+|. | .+ +...|+++.+| |+.-++++...+++++++.+|.|||-|++-.
T Consensus 117 r~~V~F~~~NL~~~~~~~~~fD~I~CRN--------VlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDPPFGRFDLIFCRN--------VLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HTTEEEEE--TT-S------EEEEEE-S--------SGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred cCceEEEecccCCCCcccCCccEEEecC--------EEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 4577777 3 21 35589999999 7889999999999999999999999997753
No 67
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=91.30 E-value=1.1 Score=36.89 Aligned_cols=86 Identities=10% Similarity=0.116 Sum_probs=52.6
Q ss_pred cceeecC-ChHHHHHHHHHHC-CC--C---Cc-cccccccchhhhccCCCCCCceeee--ee---cC---CCcceeeeeh
Q 044941 77 EAFADHQ-NAQQALETVAQQV-PN--F---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF---YP---NKSCTLLIKN 140 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~-P~--l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf---fP---~~AD~ylLk~ 140 (202)
..++|+| |+|.++..+++.. |. + |. +...+.+....+. .++.++++++ +. .+ ...|.+++..
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~--~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK--FGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--hCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 4799998 9999999998864 32 1 22 1222223333322 1334566665 22 22 3367766532
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
..++...+|+.++..|+|||++++
T Consensus 120 -------------~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 120 -------------GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred -------------CcccHHHHHHHHHHHcCCCcEEEE
Confidence 234567889999999999999975
No 68
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=91.27 E-value=0.78 Score=42.43 Aligned_cols=93 Identities=6% Similarity=-0.036 Sum_probs=59.1
Q ss_pred cceeecC-ChHHHHHHHHHHCCC-C---Cc-cccccccchhhhccCCCCCCceeee--eec--CCCcceeeeehhccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN-F---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY--PNKSCTLLIKNMYNVKF 146 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~-l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff--P~~AD~ylLk~m~~~P~ 146 (202)
..++|+| |.|.++..+++++.. + +. +.....+....+ ++ .+++. ++. +...|.++...|
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~----~l--~v~~~~~D~~~l~~~fD~Ivs~~~----- 237 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA----GL--PVEIRLQDYRDLNGQFDRIVSVGM----- 237 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----cC--eEEEEECchhhcCCCCCEEEEeCc-----
Confidence 4799998 899999999887632 1 21 111122222111 12 23333 322 445788877664
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++...+++...+|+.++..|+|||++++.....+
T Consensus 238 ---~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 238 ---FEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred ---hhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 4566677778999999999999999998875444
No 69
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=91.16 E-value=1 Score=39.78 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=56.2
Q ss_pred CcceeecC-ChHHHHHHHHHHCCC-C---Cc-cccccccchhhhccCCCCCCceeee--ee--c-CCCcceeeeehhccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPN-F---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF--Y-PNKSCTLLIKNMYNV 144 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~-l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf--f-P~~AD~ylLk~m~~~ 144 (202)
..+++|+| |+|.++..+++.... + |. +..+..|....+.. ++.+++... +. + +...|+++. |+
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n--~~~~~~~~~~~~~~~~~~~~fDlVva-n~--- 233 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELN--QVSDRLQVKLIYLEQPIEGKADVIVA-NI--- 233 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc--CCCcceEEEecccccccCCCceEEEE-ec---
Confidence 35799998 999988887765432 1 32 22233444444322 455565554 22 2 345787765 42
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
+ -+....++.+++..|+|||.+++...+
T Consensus 234 -----~----~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 234 -----L----AEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred -----C----HHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1 234567899999999999999887754
No 70
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.16 E-value=1.4 Score=37.95 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=66.3
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC-----Cccccc-cccchhhhc-cCCCCCCcee--ee-e---------ecCCCcceee
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF-----GTEHDK-AHCPLHLKT-GACRFGQRCS--RV-H---------FYPNKSCTLL 137 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l-----dl~~d~-~~~~~~~k~-gacr~~dRcs--~v-h---------ffP~~AD~yl 137 (202)
.+.+++ |+|.=+..+++++|++ |..... .....+... +.-.+..-.. .. + +.+...|.++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 388886 9999999999999997 222211 122222211 1001111010 00 1 1233579999
Q ss_pred eehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 138 IKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 138 Lk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
--| ++|--+-+.+..+++.+.+.|++||.+++.-...-++
T Consensus 108 ~~N--------~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 108 CIN--------MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG 147 (204)
T ss_pred ehh--------HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence 999 5699999999999999999999999999998876654
No 71
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=90.59 E-value=0.85 Score=37.97 Aligned_cols=91 Identities=4% Similarity=-0.037 Sum_probs=56.7
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-Ccc---ccccccchhhhccCCCCCCceeee--ee--cCCCcceeeeehhccccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-GTE---HDKAHCPLHLKTGACRFGQRCSRV--HF--YPNKSCTLLIKNMYNVKF 146 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-dl~---~d~~~~~~~~k~gacr~~dRcs~v--hf--fP~~AD~ylLk~m~~~P~ 146 (202)
..+++|+| |.|.++..+++....+ ++. .....+....... ...+++++. ++ .|...|+++...
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~fD~ii~~~------ 127 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR--DVAGNVEFEVNDLLSLCGEFDIVVCMD------ 127 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECChhhCCCCcCEEEEhh------
Confidence 35799998 9999999998764432 221 2222233322211 233466666 32 255579888877
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
+++.++.++..+.+++++..+. +|-++.
T Consensus 128 --~l~~~~~~~~~~~l~~i~~~~~-~~~~i~ 155 (219)
T TIGR02021 128 --VLIHYPASDMAKALGHLASLTK-ERVIFT 155 (219)
T ss_pred --HHHhCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 5677888888899999987665 443333
No 72
>PLN02366 spermidine synthase
Probab=90.49 E-value=1.1 Score=40.39 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=57.8
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC------Cc-cccccccchhhhccCCCC-CCceeee--ee---c---C-CCcceee
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF------GT-EHDKAHCPLHLKTGACRF-GQRCSRV--HF---Y---P-NKSCTLL 137 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l------dl-~~d~~~~~~~~k~gacr~-~dRcs~v--hf---f---P-~~AD~yl 137 (202)
..++.++| |.|.++.++++ +|.. ++ +.+...|..++..-.+++ ..|++++ |. . | ...|+++
T Consensus 92 pkrVLiIGgG~G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCeEEEEcCCccHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 45788997 78889988885 5663 22 234566666654322344 3488887 42 2 3 3478887
Q ss_pred eehhcccccccccCCCCHH---HHHHHHHHHHhhCCCCCEEEE
Q 044941 138 IKNMYNVKFQWVLTTWTDD---ECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 138 Lk~m~~~P~k~VLHdW~De---e~~~IL~~~~~AL~~gGrLlI 177 (202)
+-. + ..+... ...+.|+.|++.|.|||.+++
T Consensus 171 ~D~-~--------dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 171 VDS-S--------DPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EcC-C--------CCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 642 1 112211 246789999999999999865
No 73
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.38 E-value=0.34 Score=43.39 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCCceeee-e-e----cC--CCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 119 FGQRCSRV-H-F----YP--NKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 119 ~~dRcs~v-h-f----fP--~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
+..+++|. | . +| ...|+++.+| |+..++++.-.+++++++.+|.|||.|++=
T Consensus 202 lr~~V~F~~~NL~~~~~~~~~~fD~I~cRN--------vliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 202 LANYVDFQQLNLLAKQWAVPGPFDAIFCRN--------VMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHccCEEEcccCCCCCCccCCCcceeeHhh--------HHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34567776 3 2 22 4589999999 778999999999999999999999987653
No 74
>PRK04266 fibrillarin; Provisional
Probab=90.29 E-value=2 Score=36.88 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=48.0
Q ss_pred cceeecC-ChHHHHHHHHHHCCCCCccccccccch----hhhccCCCCCCceeee--ee--------cCCCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNFGTEHDKAHCPL----HLKTGACRFGQRCSRV--HF--------YPNKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ldl~~d~~~~~~----~~k~gacr~~dRcs~v--hf--------fP~~AD~ylLk~m 141 (202)
.+++|+| |.|.++..+++..+. +.....+..+. ..+.. +-...+... +. ++...|+++
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a--~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~---- 146 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVA--EERKNIIPILADARKPERYAHVVEKVDVIY---- 146 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHh--hhcCCcEEEECCCCCcchhhhccccCCEEE----
Confidence 5799998 999999999998872 22222222221 11110 100123332 21 122234443
Q ss_pred cccccccccCCCCHH-HHHHHHHHHHhhCCCCCEEEE
Q 044941 142 YNVKFQWVLTTWTDD-ECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 142 ~~~P~k~VLHdW~De-e~~~IL~~~~~AL~~gGrLlI 177 (202)
|+..+. +....|++++..|+|||+++|
T Consensus 147 ---------~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 147 ---------QDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ---------ECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 444333 445678999999999999998
No 75
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=89.65 E-value=1.1 Score=40.35 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=72.3
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC---Ccccc---ccccchhhhccCCCCCCceeee--e--ecCCCcceeeeehhccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF---GTEHD---KAHCPLHLKTGACRFGQRCSRV--H--FYPNKSCTLLIKNMYNV 144 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l---dl~~d---~~~~~~~~k~gacr~~dRcs~v--h--ffP~~AD~ylLk~m~~~ 144 (202)
+.++.|+| |-|.++.-.++.| +. |+-.. ...+...++. -++.+++++. + .+....|-++=-.||
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~--~gl~~~v~v~l~d~rd~~e~fDrIvSvgmf-- 147 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAA--RGLEDNVEVRLQDYRDFEEPFDRIVSVGMF-- 147 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHH--cCCCcccEEEeccccccccccceeeehhhH--
Confidence 46899999 9999999999998 32 32222 2333333332 2577788776 3 344448988888877
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCC
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 186 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~ 186 (202)
+....+.-...++++++-|+|||+++......+...
T Consensus 148 ------Ehvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~ 183 (283)
T COG2230 148 ------EHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE 183 (283)
T ss_pred ------HHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc
Confidence 456668888999999999999999999988777643
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.50 E-value=1.5 Score=36.49 Aligned_cols=84 Identities=8% Similarity=0.011 Sum_probs=51.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC----Ccccc---ccccchhhhccCCCCCCceeee--ee---cC--CCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF----GTEHD---KAHCPLHLKTGACRFGQRCSRV--HF---YP--NKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l----dl~~d---~~~~~~~~k~gacr~~dRcs~v--hf---fP--~~AD~ylLk~m 141 (202)
..++|+| |+|.++..+++..+.- +...+ ...+...++. .++.+++++. ++ +| ...|++++..
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~--~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~- 150 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA- 150 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEECCcccCCccCCCccEEEEcc-
Confidence 5799998 9999998888876522 22222 2233333332 2455567776 33 23 3478888776
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
..+.. ...+++.|.+||+|++.
T Consensus 151 -------~~~~~--------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 151 -------AASTI--------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred -------Ccchh--------hHHHHHhcCcCcEEEEE
Confidence 33322 34577889999998764
No 77
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=89.42 E-value=1.1 Score=39.89 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=60.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCCC------cc-ccccccchhhhccCCCCCCceeee--ee----cCCCcceeeeehhc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNFG------TE-HDKAHCPLHLKTGACRFGQRCSRV--HF----YPNKSCTLLIKNMY 142 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ld------l~-~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~~AD~ylLk~m~ 142 (202)
.+++|.| |+|.+++.|+++.-..| .- .-.+.|.+.++.. +++++++.. |. ++...|.++|--
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~~~~~vDav~LDm-- 171 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGDRVTLKLGDVREGIDEEDVDAVFLDL-- 171 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccccceEEEeccccccccccccCEEEEcC--
Confidence 4577777 99999999998543322 11 1134455566554 788888776 43 466678887653
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 143 NVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 143 ~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
.-.| +.+.+++++|.|||.+.++-..++
T Consensus 172 -------p~PW------~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 172 -------PDPW------NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred -------CChH------HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 2345 478889999999999988765444
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=89.31 E-value=1.6 Score=35.74 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=51.5
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--ee---c---CCCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF---Y---PNKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf---f---P~~AD~ylLk~m 141 (202)
..++|++ |.|.++..+++..|.. |. +.....+....+.. ++ ++++++ +. + ....|.+++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~--~~-~~v~~~~~d~~~~~~~~~~~~d~v~~--- 115 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF--GV-KNVEVIEGSAPECLAQLAPAPDRVCI--- 115 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CC-CCeEEEECchHHHHhhCCCCCCEEEE---
Confidence 4699997 9999999999888763 22 22223333333221 22 245554 21 1 111233222
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
+. ......+|++++..|+|||++++...
T Consensus 116 ----------~~-~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 116 ----------EG-GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----------EC-CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 21 23457899999999999999888764
No 79
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.31 E-value=1.3 Score=37.78 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=55.7
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--eec-C---CCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY-P---NKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff-P---~~AD~ylLk~m~~ 143 (202)
..++|++ |+|.++..+++..|.. |. +.....+....+ .....+++++ +++ | ...|+++..-=|-
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~---~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK---HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---hCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 5799998 9999999999998764 22 112223333322 1234567666 443 2 3467765421010
Q ss_pred cccccccC------------------CCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 144 VKFQWVLT------------------TWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 144 ~P~k~VLH------------------dW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
+ .-..+ +-.-+...++++++...|++||.+++
T Consensus 187 -~-~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 187 -P-EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred -C-cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 0 00001 11234457888999999999999876
No 80
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=89.04 E-value=1.3 Score=36.61 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=52.6
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cccccc---cccchhhhccCCCCCCceeee--ee--c--CCCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTEHDK---AHCPLHLKTGACRFGQRCSRV--HF--Y--PNKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~~d~---~~~~~~~k~gacr~~dRcs~v--hf--f--P~~AD~ylLk~m~~ 143 (202)
..++|+| |.|.++..+++.+|.. ++.... ..+....+.. ++. +++++ +. + ....|+++...
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~--~~~-~i~~i~~d~~~~~~~~~fD~I~s~~--- 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL--GLN-NVEIVNGRAEDFQHEEQFDVITSRA--- 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh--CCC-CeEEEecchhhccccCCccEEEehh---
Confidence 4699998 9999999988888873 222221 2223332222 232 46665 22 1 23478765532
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
+|+ ...+++.++..|+|||++++..
T Consensus 118 ------~~~-----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 ------LAS-----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ------hhC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 233 3357788899999999998874
No 81
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=89.00 E-value=1.5 Score=38.43 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=57.1
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--eec---CC-Ccceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY---PN-KSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff---P~-~AD~ylLk~m~~ 143 (202)
..++|++ |+|.++..++..+|+. |. +.....+....+.. ++.+|++++ +++ +. ..|+++. |
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~--~~~~~v~~~~~d~~~~~~~~~fDlIvs-N--- 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN--QLEHRVEFIQSNLFEPLAGQKIDIIVS-N--- 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhccCcCCCccEEEE-C---
Confidence 4699997 9999999999999863 22 22233344433322 455667777 333 33 4676654 2
Q ss_pred cccc---c-------ccCCCC-----------HHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 144 VKFQ---W-------VLTTWT-----------DDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 144 ~P~k---~-------VLHdW~-----------Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
|+. . +.+ +. -+...++++.+...|.+||.+ ++|.
T Consensus 190 -PPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l-~~e~ 244 (284)
T TIGR00536 190 -PPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFL-VCEI 244 (284)
T ss_pred -CCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEE-EEEE
Confidence 320 0 111 11 135678888899999999976 4453
No 82
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=88.94 E-value=0.91 Score=37.94 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=53.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-Ccccc---ccccchhhhccCCCCCCceeee--e---e---cCCCcceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-GTEHD---KAHCPLHLKTGACRFGQRCSRV--H---F---YPNKSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-dl~~d---~~~~~~~~k~gacr~~dRcs~v--h---f---fP~~AD~ylLk~m~~ 143 (202)
..++|+| |.|.++..+++...++ ++... ...+...+.. .+.++++. + + .+...|++++.+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~--- 122 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALE----SGLKIDYRQTTAEELAAEHPGQFDVVTCME--- 122 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHH----cCCceEEEecCHHHhhhhcCCCccEEEEhh---
Confidence 4699997 8899988888754332 21111 1222222211 12233443 2 1 134579999988
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
+++...+. ..+|+++...|.+||.+++..
T Consensus 123 -----~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 123 -----MLEHVPDP--ASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred -----HhhccCCH--HHHHHHHHHHcCCCcEEEEEe
Confidence 44555543 468999999999999988764
No 83
>PRK00811 spermidine synthase; Provisional
Probab=88.61 E-value=1.8 Score=38.18 Aligned_cols=93 Identities=20% Similarity=0.191 Sum_probs=57.2
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC------Cc-cccccccchhhhccCCCC--CCceeee--e---ec---CCCcceee
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF------GT-EHDKAHCPLHLKTGACRF--GQRCSRV--H---FY---PNKSCTLL 137 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l------dl-~~d~~~~~~~~k~gacr~--~dRcs~v--h---ff---P~~AD~yl 137 (202)
..++.++| |.|.++.++++ +|.. ++ +.+...|..++..-.++. ..|++++ | +. +...|+++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCEEEEEecCchHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 34688887 88999999986 4442 22 334455666554322232 5678776 3 22 24579887
Q ss_pred eehhcccccccccCCCCH-H--HHHHHHHHHHhhCCCCCEEEEe
Q 044941 138 IKNMYNVKFQWVLTTWTD-D--ECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 138 Lk~m~~~P~k~VLHdW~D-e--e~~~IL~~~~~AL~~gGrLlI~ 178 (202)
+-. + ..+.. . ...+.|+.|++.|.+||.+++.
T Consensus 156 ~D~-~--------dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 156 VDS-T--------DPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ECC-C--------CCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 642 1 11211 1 2468899999999999988763
No 84
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=88.06 E-value=2.2 Score=39.96 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=60.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC------Ccc-ccccccchhhhccCCCCCCceeee--e---ecC-CCcceeeee---
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF------GTE-HDKAHCPLHLKTGACRFGQRCSRV--H---FYP-NKSCTLLIK--- 139 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l------dl~-~d~~~~~~~~k~gacr~~dRcs~v--h---ffP-~~AD~ylLk--- 139 (202)
..++|++ |.|..+..+++..+.- |.. .-...+....+.. ++ +.++++ + +.| ...|++++-
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--GI-TIIETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--CC-CeEEEEeCcccccccCCCCCEEEEcCCC
Confidence 4699997 8898887777765432 211 1122233333321 23 234554 3 223 346888752
Q ss_pred ----hhcccccccccCCCCHHHH-------HHHHHHHHhhCCCCCEEEEeeeccCCCCCc
Q 044941 140 ----NMYNVKFQWVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPDDSNE 188 (202)
Q Consensus 140 ----~m~~~P~k~VLHdW~Dee~-------~~IL~~~~~AL~~gGrLlI~E~vl~~~~~~ 188 (202)
.+..+|. +...|+.++. .++|++++..|+|||+|+..-..+....++
T Consensus 329 sg~g~~~r~p~--~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene 386 (445)
T PRK14904 329 TGTGVLGRRAE--LRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENE 386 (445)
T ss_pred CCcchhhcCcc--hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHH
Confidence 2222344 2234555544 368999999999999999888666544333
No 85
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=87.86 E-value=2 Score=40.10 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=60.2
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC------Cccc-cccccchhhhccCCCCCCceeee--ee--cC-------CCccee
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF------GTEH-DKAHCPLHLKTGACRFGQRCSRV--HF--YP-------NKSCTL 136 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l------dl~~-d~~~~~~~~k~gacr~~dRcs~v--hf--fP-------~~AD~y 136 (202)
...++|++ |.|..+..+++...+- |... -...+...++.. ++. .++++ +. ++ ...|.+
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--GLK-SIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--CCC-eEEEEeCChhhcccccccccccCCEE
Confidence 45799996 8899888888876442 2211 111222222211 222 24444 21 11 346888
Q ss_pred ee-------ehhcccccccccCCCCHHH-------HHHHHHHHHhhCCCCCEEEEeeeccCCCC
Q 044941 137 LI-------KNMYNVKFQWVLTTWTDDE-------CKLIMENCYKALPAGGKLIACEPVLPDDS 186 (202)
Q Consensus 137 lL-------k~m~~~P~k~VLHdW~Dee-------~~~IL~~~~~AL~~gGrLlI~E~vl~~~~ 186 (202)
++ +.+-.+|. +.+.|+.++ -.+||++++..|+|||+|+.....+....
T Consensus 330 l~DaPCSg~G~~~r~p~--~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E 391 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPD--ARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE 391 (434)
T ss_pred EEeCCCCcccccccCcc--hhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 86 22222444 223455555 36889999999999999988875554433
No 86
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=87.40 E-value=1.7 Score=37.24 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=56.0
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC------Cc-cccccccchhhhccCCCCCCceeee--ee---cC--------CCccee
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF------GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF---YP--------NKSCTL 136 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l------dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf---fP--------~~AD~y 136 (202)
.++|+| |.|.-+..+++..|.= +. +.-...+..+++.. ++.+++++. +. ++ ...|.+
T Consensus 71 ~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 71 NTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred EEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 577887 7888777777776641 22 12234455555543 677888776 22 11 124554
Q ss_pred eeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 137 LIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 137 lLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++ |-+.+.....++.+.+-|+|||. +++|+++-
T Consensus 149 fi-------------Da~k~~y~~~~~~~~~ll~~GG~-ii~dn~l~ 181 (234)
T PLN02781 149 FV-------------DADKPNYVHFHEQLLKLVKVGGI-IAFDNTLW 181 (234)
T ss_pred EE-------------CCCHHHHHHHHHHHHHhcCCCeE-EEEEcCCc
Confidence 44 33456667889999999999985 56676653
No 87
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=87.40 E-value=2.2 Score=38.94 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=62.8
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-------C-ccccccccchhhhccCCCCCCceeee--eec---------CCCcce
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-------G-TEHDKAHCPLHLKTGACRFGQRCSRV--HFY---------PNKSCT 135 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-------d-l~~d~~~~~~~~k~gacr~~dRcs~v--hff---------P~~AD~ 135 (202)
.+.++|+. |.|..+..+++.+|.- | .+..++.....++. .++.+.++|. +-| |. -++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~--~gL~~i~~f~~~dAfd~~~l~~l~p~-P~l 212 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE--RGLEDIARFEQGDAFDRDSLAALDPA-PTL 212 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH--cCCccceEEEecCCCCHhHhhccCCC-CCE
Confidence 36899995 9999999999999982 1 12222333344433 3677777776 422 33 578
Q ss_pred eeeehhcccccccccCCCCHHH-HHHHHHHHHhhCCCCCEEEE
Q 044941 136 LLIKNMYNVKFQWVLTTWTDDE-CKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 136 ylLk~m~~~P~k~VLHdW~Dee-~~~IL~~~~~AL~~gGrLlI 177 (202)
.+++.+| --++|.+ +.+.|..++.++.|||.|+-
T Consensus 213 ~iVsGL~--------ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 213 AIVSGLY--------ELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred EEEecch--------hhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 8888865 3577766 44579999999999999864
No 88
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=87.29 E-value=4.6 Score=37.66 Aligned_cols=106 Identities=11% Similarity=0.167 Sum_probs=57.7
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeee--ee------cC-CCcceeeee
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF------YP-NKSCTLLIK 139 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf------fP-~~AD~ylLk 139 (202)
...++|++ |.|..+..+++..+.. |.. .-...+....+. ++-.++++ +. ++ ...|.+++-
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~----~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR----LGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH----cCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 45799997 9999999999988751 211 111222222221 12123333 22 11 235766632
Q ss_pred h-------hcccccccccCCCCHHH-------HHHHHHHHHhhCCCCCEEEEeeeccCCCCC
Q 044941 140 N-------MYNVKFQWVLTTWTDDE-------CKLIMENCYKALPAGGKLIACEPVLPDDSN 187 (202)
Q Consensus 140 ~-------m~~~P~k~VLHdW~Dee-------~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~ 187 (202)
- +..+|. +.+.++.++ ..++|++++..|+|||+|++...-+....+
T Consensus 321 ~Pcs~~G~~~~~p~--~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~En 380 (427)
T PRK10901 321 APCSATGVIRRHPD--IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEEN 380 (427)
T ss_pred CCCCcccccccCcc--ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhC
Confidence 1 111222 112344443 357999999999999999887754443333
No 89
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=87.04 E-value=0.85 Score=40.24 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=59.4
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCC--Cceeee-ee-cC-CCcceeeeehhcccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFG--QRCSRV-HF-YP-NKSCTLLIKNMYNVK 145 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~--dRcs~v-hf-fP-~~AD~ylLk~m~~~P 145 (202)
..++.|+| |.|.++..+++.--+. |. +.-...+..+-... ++. -|+... +. .. ...|+++--.
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~--gv~i~y~~~~~edl~~~~~~FDvV~cmE----- 132 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALES--GVNIDYRQATVEDLASAGGQFDVVTCME----- 132 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhc--cccccchhhhHHHHHhcCCCccEEEEhh-----
Confidence 46899999 8889999999976443 32 22222233222111 222 233333 22 23 4589999888
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|++...|.+. ++++|.+-++|||.+++-.
T Consensus 133 ---VlEHv~dp~~--~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 133 ---VLEHVPDPES--FLRACAKLVKPGGILFLST 161 (243)
T ss_pred ---HHHccCCHHH--HHHHHHHHcCCCcEEEEec
Confidence 6778888877 9999999999999886544
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=86.99 E-value=2 Score=35.94 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=50.3
Q ss_pred CcceeecC-ChHHHHHHHHHHCCC---C-Cccc---cccccchhhhccCCCCCCceeee--ee---cC--CCcceeeeeh
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPN---F-GTEH---DKAHCPLHLKTGACRFGQRCSRV--HF---YP--NKSCTLLIKN 140 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~---l-dl~~---d~~~~~~~~k~gacr~~dRcs~v--hf---fP--~~AD~ylLk~ 140 (202)
...+.|+| |.|.++..+++..+. + ++.. ....+...++. +++ ++++++ +. ++ ...|++++..
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~--~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK--LGL-DNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--CCC-CCeEEEECCcccCCcccCCCCEEEEcC
Confidence 35799998 999999999988654 2 2222 22233333322 233 356665 32 22 3478887765
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
.. ..+.+.+++.|++||++++.
T Consensus 155 --------~~--------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 --------AG--------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred --------Cc--------ccccHHHHHhcCcCcEEEEE
Confidence 21 22445677889999998764
No 91
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=86.97 E-value=0.94 Score=40.30 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 130 PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 130 P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
+..-|+++.+| ||--++.+.-.+|+++|+..|.+||.|++=
T Consensus 200 ~~~fD~IfCRN--------VLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 200 LGKFDLIFCRN--------VLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred cCCCCEEEEcc--------eEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45689999999 888999999999999999999999999774
No 92
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=86.28 E-value=1.2 Score=39.62 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=65.6
Q ss_pred ceeecC-ChHHHHHHHHHHCCC--C---CccccccccchhhhccCCCCCCce-eee-ee---------cCCCcceeeeeh
Q 044941 78 AFADHQ-NAQQALETVAQQVPN--F---GTEHDKAHCPLHLKTGACRFGQRC-SRV-HF---------YPNKSCTLLIKN 140 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~--l---dl~~d~~~~~~~~k~gacr~~dRc-s~v-hf---------fP~~AD~ylLk~ 140 (202)
++..+| |.|++.--+++.+|+ | ...+. +.+....|..++.-..|| +++ |+ .+..-|+++|=.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfs-p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFS-PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCC-hHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 577888 999999999999998 4 11111 222233343333334444 333 22 133457776664
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
||.-...+.-.+.+++++.-++|||.|+..|.-..
T Consensus 153 --------vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 153 --------VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred --------EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 77888889999999999999999999999886443
No 93
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=86.27 E-value=5.2 Score=37.22 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=61.5
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-----Ccc-ccccccchhhhccCCCCCCceeee--ee-----c-C-CCcceeeee
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-----GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF-----Y-P-NKSCTLLIK 139 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-----dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf-----f-P-~~AD~ylLk 139 (202)
...+.|++ |.|..+..+++..+.- |.. .-...+...++.. ++..++... +. + + ...|.+++-
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~--g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL--GLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEeccccccccccccccccCEEEEc
Confidence 45799996 8999999999887731 221 1122223333321 222233223 11 1 2 336777752
Q ss_pred ------hhcc-cccccccCCCCHHH-------HHHHHHHHHhhCCCCCEEEEeeeccCCCCCc
Q 044941 140 ------NMYN-VKFQWVLTTWTDDE-------CKLIMENCYKALPAGGKLIACEPVLPDDSNE 188 (202)
Q Consensus 140 ------~m~~-~P~k~VLHdW~Dee-------~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~~ 188 (202)
.++. +|. +...|+.++ -.++|++++..|+|||+|++...-+....++
T Consensus 317 aPcSg~G~~~~~p~--~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene 377 (426)
T TIGR00563 317 APCSATGVIRRHPD--IKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS 377 (426)
T ss_pred CCCCCCcccccCcc--hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence 2222 344 222345554 3679999999999999999887655544443
No 94
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=86.21 E-value=3.9 Score=38.23 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=57.4
Q ss_pred cceeecC-ChHHHHHHHHHHC-CCC-----Cccc-cccccchhhhccCCCCCCceeee--ee------cCCCcceeeeeh
Q 044941 77 EAFADHQ-NAQQALETVAQQV-PNF-----GTEH-DKAHCPLHLKTGACRFGQRCSRV--HF------YPNKSCTLLIKN 140 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~-P~l-----dl~~-d~~~~~~~~k~gacr~~dRcs~v--hf------fP~~AD~ylLk~ 140 (202)
..++|++ |.|..+..+++.. |.- |... -...+...++.. ++.+ ++++ ++ ++...|++++--
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--GLTN-IETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCe-EEEEeCCcccccchhcccCCEEEEcC
Confidence 5699997 9999999999876 331 3221 122233333221 3333 5554 32 233467777531
Q ss_pred ------hc-ccccccccCCCCHHHH-------HHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 141 ------MY-NVKFQWVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 141 ------m~-~~P~k~VLHdW~Dee~-------~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
.+ .+|. +.-.++.++. .++|++++..|+|||+|+..-.-+.
T Consensus 329 Pcsg~G~~~~~p~--~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 329 PCSGLGVIRRKPD--IKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCCCeeeccCcc--hhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 11 1333 1123444443 5689999999999999987554443
No 95
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=85.73 E-value=4 Score=34.63 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=58.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-Cccccccccchhhh-cc-----------CCCCCCceeee--eec--C---C-Ccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-GTEHDKAHCPLHLK-TG-----------ACRFGQRCSRV--HFY--P---N-KSC 134 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-dl~~d~~~~~~~~k-~g-----------acr~~dRcs~v--hff--P---~-~AD 134 (202)
.++.|.+ |.|.-+..++++==+. ++......+..+.+ .+ ...-+.++++. |++ + . ..|
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 5788997 9999999888742111 11111111111111 00 00013466655 665 2 1 147
Q ss_pred eeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 135 TLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 135 ~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
.++=.. ++|..+.+.-.+.++.+.+.|+|||.++++-...
T Consensus 116 ~i~D~~--------~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 116 AVYDRA--------ALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred EEEech--------hhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 666665 5577888888999999999999999976664433
No 96
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.70 E-value=0.15 Score=39.81 Aligned_cols=31 Identities=32% Similarity=0.704 Sum_probs=28.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
|||-.+|-|+-.++.|++++..|+|||.+|+
T Consensus 12 kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 12 KWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 6788899999999999999999999988754
No 97
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=85.49 E-value=0.29 Score=28.52 Aligned_cols=23 Identities=35% Similarity=0.977 Sum_probs=17.3
Q ss_pred ccccchhhhccCCCCCCceeeee
Q 044941 105 KAHCPLHLKTGACRFGQRCSRVH 127 (202)
Q Consensus 105 ~~~~~~~~k~gacr~~dRcs~vh 127 (202)
.+.|..+.+.|.|.+|++|.+.|
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H 25 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAH 25 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBS
T ss_pred cccChhhccCCccCCCCCcCccC
Confidence 46788999999999999999876
No 98
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=85.02 E-value=4.2 Score=34.94 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=52.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCC-C---Cc-cccccccchhhhccCCCCCCceeeeeecCCCcceeeeehhcccccccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPN-F---GT-EHDKAHCPLHLKTGACRFGQRCSRVHFYPNKSCTLLIKNMYNVKFQWV 149 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~-l---dl-~~d~~~~~~~~k~gacr~~dRcs~vhffP~~AD~ylLk~m~~~P~k~V 149 (202)
..+++|+| |+|.++..+++..+. + |. +.....|....+.. ++.+++.+.+.-. ..|+++ .|+
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~--~~~~~~~~~~~~~-~fD~Vv-ani-------- 187 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN--GVELNVYLPQGDL-KADVIV-ANI-------- 187 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc--CCCceEEEccCCC-CcCEEE-EcC--------
Confidence 45799998 899888877765444 2 22 22223334333322 2333333221001 256654 342
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 150 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 150 LHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
.-+....+++.+++.|+|||.+++...+..
T Consensus 188 ----~~~~~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 188 ----LANPLLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred ----cHHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 123456788999999999999998775543
No 99
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=84.83 E-value=3.8 Score=35.67 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=55.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCC--C---Cc-cccccccchhhhccCCCC-CCceeee--ee---c---CCCcceeeeeh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN--F---GT-EHDKAHCPLHLKTGACRF-GQRCSRV--HF---Y---PNKSCTLLIKN 140 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~--l---dl-~~d~~~~~~~~k~gacr~-~dRcs~v--hf---f---P~~AD~ylLk~ 140 (202)
.++.++| |.|.++.++++..+. + +. +.....|..++......+ ..|++.. +. . +...|++++-.
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~ 153 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDS 153 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeC
Confidence 4788897 888899888875432 1 22 233455555543211112 2466655 32 1 45689988765
Q ss_pred hcccccccccCCCCHHH--HHHHHHHHHhhCCCCCEEEEe
Q 044941 141 MYNVKFQWVLTTWTDDE--CKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee--~~~IL~~~~~AL~~gGrLlI~ 178 (202)
.. +.-.... ..+.|+++++.|.+||.+++.
T Consensus 154 ~~--------~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 154 TD--------PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CC--------CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 21 1111112 468889999999999998875
No 100
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=84.72 E-value=1.5 Score=32.24 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=55.0
Q ss_pred cceeecC-ChHHHHHHHHHHCCC-C-Ccc---ccccccchhhhccCCCCCCceeee--ee------cC-CCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN-F-GTE---HDKAHCPLHLKTGACRFGQRCSRV--HF------YP-NKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~-l-dl~---~d~~~~~~~~k~gacr~~dRcs~v--hf------fP-~~AD~ylLk~m 141 (202)
.+++|.+ |.|.++..+++.... + +.+ .....+...+... +..+|+.+. ++ ++ ...|+++.-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n-- 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN--GLDDRVEVIVGDARDLPEPLPDGKFDLIVTN-- 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC--TTTTTEEEEESHHHHHHHTCTTT-EEEEEE---
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc--cCCceEEEEECchhhchhhccCceeEEEEEC--
Confidence 3688987 999999999999822 1 222 2223334433332 456788877 32 23 335665543
Q ss_pred ccccccccc---CCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 142 YNVKFQWVL---TTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 142 ~~~P~k~VL---HdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
|+.... ..-..+....+++.+.+.|++||.++++
T Consensus 78 ---pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 78 ---PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp ----STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 231100 1111224578899999999999998764
No 101
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=84.35 E-value=4.4 Score=38.90 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=56.1
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--eec---CC-Ccceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY---PN-KSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff---P~-~AD~ylLk~m~~ 143 (202)
..++|+| |+|.++..+++.+|+. |. +.....+....+. .++.+|++++ +++ +. ..|+++. |
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~--~~l~~~v~~~~~D~~~~~~~~~fDlIvs-N--- 213 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK--YEVTDRIQIIHSNWFENIEKQKFDFIVS-N--- 213 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH--cCCccceeeeecchhhhCcCCCccEEEE-C---
Confidence 4699998 9999999999999874 32 2233334444332 2566788877 443 32 3676653 2
Q ss_pred ccccc-----------cc-CC----C-CH----HHHHHHHHHHHhhCCCCCEEEE
Q 044941 144 VKFQW-----------VL-TT----W-TD----DECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 144 ~P~k~-----------VL-Hd----W-~D----ee~~~IL~~~~~AL~~gGrLlI 177 (202)
|+.. +. |+ + .. +-..+|++.+..-|.+||.+++
T Consensus 214 -PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 214 -PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred -CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2200 00 10 0 11 2345677788888999998754
No 102
>PRK05785 hypothetical protein; Provisional
Probab=83.74 E-value=4.3 Score=34.51 Aligned_cols=93 Identities=5% Similarity=-0.118 Sum_probs=53.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCCCccccccccchhhhccCCCCCCcee-eee-ecC-CCcceeeeehhcccccccccCC
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNFGTEHDKAHCPLHLKTGACRFGQRCS-RVH-FYP-NKSCTLLIKNMYNVKFQWVLTT 152 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ldl~~d~~~~~~~~k~gacr~~dRcs-~vh-ffP-~~AD~ylLk~m~~~P~k~VLHd 152 (202)
..+.|++ |+|.++..+++.+.. ...-.+.++..++.+.-.....+. ..+ .|| ...|+++... .+|+
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~--~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~--------~l~~ 122 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY--YVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSF--------ALHA 122 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC--EEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecC--------hhhc
Confidence 4799998 999999999988621 111112222222211000000010 011 234 3479998876 7788
Q ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 153 WTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 153 W~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++|. .+.|++++..|+| .+.++|.-.+
T Consensus 123 ~~d~--~~~l~e~~RvLkp--~~~ile~~~p 149 (226)
T PRK05785 123 SDNI--EKVIAEFTRVSRK--QVGFIAMGKP 149 (226)
T ss_pred cCCH--HHHHHHHHHHhcC--ceEEEEeCCC
Confidence 8764 5689999999998 4556665433
No 103
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=83.55 E-value=1.8 Score=36.73 Aligned_cols=86 Identities=7% Similarity=0.008 Sum_probs=50.3
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCCCceeee--ee----cCC-Ccceeeeehhccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFGQRCSRV--HF----YPN-KSCTLLIKNMYNV 144 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~-~AD~ylLk~m~~~ 144 (202)
..++|+| |.|.++..+++..-++ |. +..+..|..... .+.++ ++ +|. ..|+++...
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~~~~~fD~V~s~~---- 111 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPLATATFDLAWSNL---- 111 (251)
T ss_pred CeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcCCCCcEEEEEECc----
Confidence 3699998 9999888887643222 22 111222221110 11222 21 343 468876554
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
.+| |.. +...+|++++..|+|||.+++...
T Consensus 112 ----~l~-~~~-d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 112 ----AVQ-WCG-NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ----hhh-hcC-CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 444 432 346889999999999999987654
No 104
>PRK14968 putative methyltransferase; Provisional
Probab=82.63 E-value=6.3 Score=31.20 Aligned_cols=101 Identities=9% Similarity=0.120 Sum_probs=54.0
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCCCc-eeee--ee---cC-CCcceeeeehhccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFGQR-CSRV--HF---YP-NKSCTLLIKNMYNV 144 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~dR-cs~v--hf---fP-~~AD~ylLk~m~~~ 144 (202)
..++|+| |+|.++..+++...++ |. +.....+....+.. ++.+| +.++ ++ ++ ...|+++....|..
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN--NIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEeccccccccccCceEEEECCCcCC
Confidence 3699997 9999999999873332 22 12222232222221 22222 4444 22 23 34687776543310
Q ss_pred --cc-------ccccCCC--CHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 145 --KF-------QWVLTTW--TDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 145 --P~-------k~VLHdW--~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|. .+.++.. .......++++++..|++||.++++-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 00 0011111 12335678999999999999987764
No 105
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=81.66 E-value=1.6 Score=39.04 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=28.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
|||=.+|-|+-.++.|++++.-|.|||.+|+
T Consensus 177 kWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 177 KWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred eeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 6777899999999999999999999998754
No 106
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=81.50 E-value=5 Score=33.22 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=48.2
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-Cc---cccccccchhhhccCCCCCCceeee--ee---cC--CCcceeeeehhcc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-GT---EHDKAHCPLHLKTGACRFGQRCSRV--HF---YP--NKSCTLLIKNMYN 143 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-dl---~~d~~~~~~~~k~gacr~~dRcs~v--hf---fP--~~AD~ylLk~m~~ 143 (202)
...++|+| |+|.++..+++...++ ++ +.....+...++.. ++. .+++. +. +| ...|++++..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~--~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~--- 152 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL--GLH-NVSVRHGDGWKGWPAYAPFDRILVTA--- 152 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC--CCC-ceEEEECCcccCCCcCCCcCEEEEcc---
Confidence 35799998 8998887777665432 21 11122333333221 232 25555 22 23 3478888775
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
..+. +.+.++..|.+||++++.
T Consensus 153 -----~~~~--------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 153 -----AAPE--------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred -----Cchh--------hhHHHHHhcCCCcEEEEE
Confidence 2222 345677889999998774
No 107
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=81.36 E-value=4.3 Score=34.09 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=49.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCC---C-Ccc---ccccccchhhhccCCCCCCceeee--ee---cC--CCcceeeeeh
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPN---F-GTE---HDKAHCPLHLKTGACRFGQRCSRV--HF---YP--NKSCTLLIKN 140 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~---l-dl~---~d~~~~~~~~k~gacr~~dRcs~v--hf---fP--~~AD~ylLk~ 140 (202)
+..++|+| |+|.++..+++.... + +++ .....+...++.. ++ ++++++ +. ++ ...|.+++..
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~--g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL--GY-DNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCeEEEECCcccCCCcCCCcCEEEECC
Confidence 45799998 999999888876532 1 222 2223333333321 22 356666 32 22 3468888775
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
..++ +.+.+++.|++||++++.
T Consensus 154 --------~~~~--------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 --------AGPD--------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred --------Cccc--------chHHHHHhhCCCcEEEEE
Confidence 2232 334567789999998774
No 108
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=81.00 E-value=3.2 Score=36.12 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=40.9
Q ss_pred CCCcceeeeehhcccccccccCC--CCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCCCc
Q 044941 130 PNKSCTLLIKNMYNVKFQWVLTT--WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE 188 (202)
Q Consensus 130 P~~AD~ylLk~m~~~P~k~VLHd--W~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~~ 188 (202)
|...|+......|+ ++|. .....+.+..+.++++|+|||-++|.|.....+...
T Consensus 120 pq~~d~~~~~~~yh-----dmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~ 175 (238)
T COG4798 120 PQKLDLVPTAQNYH-----DMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL 175 (238)
T ss_pred CCcccccccchhhh-----hhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh
Confidence 56677776655453 4432 337788999999999999999999999998876543
No 109
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=80.47 E-value=2.6 Score=37.77 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=61.6
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC-----C-ccccccccchhhhccCCCCC-Cceeee--e---ec---CCCcceeeeehh
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF-----G-TEHDKAHCPLHLKTGACRFG-QRCSRV--H---FY---PNKSCTLLIKNM 141 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l-----d-l~~d~~~~~~~~k~gacr~~-dRcs~v--h---ff---P~~AD~ylLk~m 141 (202)
.+.=.| |.|.++.++++..+.= + -+.+.+.|..++...+|+.. .|+..+ | |. +...|++++-.
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~- 157 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS- 157 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC-
Confidence 344444 9999999999866531 2 25667788888876555544 888887 4 22 55689987764
Q ss_pred cccccccccCCCCHHH-----HHHHHHHHHhhCCCCCEEEEe
Q 044941 142 YNVKFQWVLTTWTDDE-----CKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee-----~~~IL~~~~~AL~~gGrLlI~ 178 (202)
.+..-- ....++.|+++|.++|-+++.
T Consensus 158 ----------tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 ----------TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred ----------CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 222111 357899999999999988776
No 110
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=80.19 E-value=2.2 Score=37.72 Aligned_cols=103 Identities=11% Similarity=0.038 Sum_probs=63.2
Q ss_pred CCCCCCCCCCcceeecC-ChHHHHHHHHHHCCCC---Cccccc---cccchhhhccCCCCCCceeee--ee--c----CC
Q 044941 67 PTSNPLPPQSEAFADHQ-NAQQALETVAQQVPNF---GTEHDK---AHCPLHLKTGACRFGQRCSRV--HF--Y----PN 131 (202)
Q Consensus 67 ~~~~~~~p~~~~~~d~~-g~G~ll~~ll~~~P~l---dl~~d~---~~~~~~~k~gacr~~dRcs~v--hf--f----P~ 131 (202)
.|..+. ...+++|.| |+|.+...++++++.. +.+-+. ..+....+.. .+.+|+++. |+ | +.
T Consensus 38 ~~~~~~--~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 38 AFAPVP--KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred hhcccc--cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhcccc
Confidence 456554 367899997 9999999999998874 333222 2333344433 688999998 33 2 22
Q ss_pred C-cceeeeehhccccccccc-------------CCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 132 K-SCTLLIKNMYNVKFQWVL-------------TTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 132 ~-AD~ylLk~m~~~P~k~VL-------------HdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
. .|.++ . ||+.+-. |.-..-.-..+++.+..-|+++|++.++
T Consensus 114 ~~fD~Ii-~----NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 114 ASFDLII-C----NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred cccCEEE-e----CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 1 34443 3 3552211 2222223457788888889999998544
No 111
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=79.26 E-value=1.7 Score=39.00 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=54.9
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC---Ccc-ccccccchhhhccCCCCCC----ceeeee-----ecCCCcceeeeehh
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF---GTE-HDKAHCPLHLKTGACRFGQ----RCSRVH-----FYPNKSCTLLIKNM 141 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l---dl~-~d~~~~~~~~k~gacr~~d----Rcs~vh-----ffP~~AD~ylLk~m 141 (202)
+.++.|+| |.|-++..+++---+. |.. ...+.+..+.+. ..-... |.++.| +-+. .|+++-.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~-dP~~~~~~~y~l~~~~~~~E~~~~~-fDaVvcse- 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKM-DPVLEGAIAYRLEYEDTDVEGLTGK-FDAVVCSE- 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhc-Cchhccccceeeehhhcchhhcccc-cceeeeHH-
Confidence 35699999 7777777887755443 332 222333333111 111222 343332 1244 89999888
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|++...| -+.+++.+.+-|+|+|+++|-.
T Consensus 167 -------vleHV~d--p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 167 -------VLEHVKD--PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred -------HHHHHhC--HHHHHHHHHHHhCCCCceEeee
Confidence 4455433 4578889999999999997754
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=79.06 E-value=5.9 Score=37.16 Aligned_cols=88 Identities=14% Similarity=0.266 Sum_probs=52.3
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC---Cccccccc---cchhhhccCCCCCCceeee--e------ecCCC-cceeeeehh
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF---GTEHDKAH---CPLHLKTGACRFGQRCSRV--H------FYPNK-SCTLLIKNM 141 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l---dl~~d~~~---~~~~~k~gacr~~dRcs~v--h------ffP~~-AD~ylLk~m 141 (202)
.++|+| |+|.++..+++++|+. |++...+. +....... ++. .+.++ + .+|.+ .|.+++-
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~--gL~-NV~~i~~DA~~ll~~~~~~s~D~I~ln-- 199 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL--NLK-NLLIINYDARLLLELLPSNSVEKIFVH-- 199 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCC-cEEEEECCHHHhhhhCCCCceeEEEEe--
Confidence 588998 9999999999999983 44433222 22222111 232 24444 2 13533 4555542
Q ss_pred cccccccccCCCCHHH-----HHHHHHHHHhhCCCCCEEEE
Q 044941 142 YNVKFQWVLTTWTDDE-----CKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee-----~~~IL~~~~~AL~~gGrLlI 177 (202)
|+ . .|.... ....|+.++..|.+||.+.+
T Consensus 200 FP--d-----PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 200 FP--V-----PWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CC--C-----CccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 21 1 344322 25779999999999999866
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=78.96 E-value=19 Score=31.31 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=59.1
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCCC------cc-ccccccchhhhccCCCCCCceeee--e--ecC---CCcceeeee-
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNFG------TE-HDKAHCPLHLKTGACRFGQRCSRV--H--FYP---NKSCTLLIK- 139 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~ld------l~-~d~~~~~~~~k~gacr~~dRcs~v--h--ffP---~~AD~ylLk- 139 (202)
...++|++ |.|..+..+++...+-+ .. .-...+...++.. ++. .+.+. + .++ ...|.+++-
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--GVL-NVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--CCC-cEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35799996 88999988888765422 11 1112222222211 222 34443 2 121 236777651
Q ss_pred -----hhc-ccccccccCCCCHHHH-------HHHHHHHHhhCCCCCEEEEeeeccCCCC
Q 044941 140 -----NMY-NVKFQWVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPDDS 186 (202)
Q Consensus 140 -----~m~-~~P~k~VLHdW~Dee~-------~~IL~~~~~AL~~gGrLlI~E~vl~~~~ 186 (202)
.++ .+|. +...|++++. .+||++..+.|+|||+|+..-.-+....
T Consensus 149 Pcsg~G~~~~~p~--~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~E 206 (264)
T TIGR00446 149 PCSGEGVIRKDPS--RKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEE 206 (264)
T ss_pred CCCCCcccccChh--hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHH
Confidence 111 1233 2235777765 4599999999999999977665554433
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=78.66 E-value=11 Score=30.55 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCCCCCEEEEe
Q 044941 157 ECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 157 e~~~IL~~~~~AL~~gGrLlI~ 178 (202)
...++|++++..|+|||++++.
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 3578899999999999999874
No 115
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=78.53 E-value=12 Score=31.88 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=55.8
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-Cccccccccchhh-hccC----------CC-CCCceeee--eec---CC---Cc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-GTEHDKAHCPLHL-KTGA----------CR-FGQRCSRV--HFY---PN---KS 133 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-dl~~d~~~~~~~~-k~ga----------cr-~~dRcs~v--hff---P~---~A 133 (202)
+.++.|++ |.|.-+..++++-=+. +.......+..+. +.+- .+ .+.++++. ++| +. ..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 35789997 9999999888741111 1111111111111 1100 00 13466654 555 11 13
Q ss_pred ceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 134 CTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 134 D~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|.++=+. ++|..+.+.-.+.++.+...|+|||.++++-
T Consensus 118 d~v~D~~--------~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 118 DAVYDRA--------ALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred eEEEehH--------hHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 5565555 5578889999999999999999999855433
No 116
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=78.46 E-value=6 Score=34.27 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=47.5
Q ss_pred cceeecC-ChHHHHHHHHHHCCCCC--ccccccccchhhhccCCCCCCceeee--ee----cCC-Ccceeeeehhccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNFG--TEHDKAHCPLHLKTGACRFGQRCSRV--HF----YPN-KSCTLLIKNMYNVKF 146 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ld--l~~d~~~~~~~~k~gacr~~dRcs~v--hf----fP~-~AD~ylLk~m~~~P~ 146 (202)
..++|+| |+|.++..+++.+|..+ ...-.+..+..++.++ .....+++. +. |+. ..|+++-..
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~-~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~------ 159 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA-KRYPQVTFCVASSHRLPFADQSLDAIIRIY------ 159 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH-HhCCCCeEEEeecccCCCcCCceeEEEEec------
Confidence 4699999 99999999999887531 1111222222222110 111234443 21 333 367775321
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 147 QWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 147 k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
. ...+++++..|+|||+++++.
T Consensus 160 --~---------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 160 --A---------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred --C---------CCCHHHHHhhccCCCEEEEEe
Confidence 1 123567888999999998864
No 117
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=78.06 E-value=4.2 Score=36.36 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=52.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC-CccccccccchhhhccCCCCCCceeee-ee--cCCCcceeeeehhccccccccc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF-GTEHDKAHCPLHLKTGACRFGQRCSRV-HF--YPNKSCTLLIKNMYNVKFQWVL 150 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l-dl~~d~~~~~~~~k~gacr~~dRcs~v-hf--fP~~AD~ylLk~m~~~P~k~VL 150 (202)
..++.|.| |.|.+...++..+.+. .++.-..... .++.. ++ ++--. +. -+...|++..-|++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~-rL~~k--g~--~vl~~~~w~~~~~~fDvIscLNvL-------- 161 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW-RLSKK--GF--TVLDIDDWQQTDFKFDVISCLNVL-------- 161 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH-HHHhC--CC--eEEehhhhhccCCceEEEeehhhh--------
Confidence 35799997 9999999998866553 3332222221 22211 11 11111 11 14458999999844
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 151 TTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 151 HdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
|-. ++=..+|+.++.+|.|+|++|+.
T Consensus 162 -DRc-~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -DRC-DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -hcc-CCHHHHHHHHHHHhCCCCEEEEE
Confidence 111 12357999999999999988653
No 118
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=77.16 E-value=4.5 Score=37.03 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=55.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC--Ccccc-ccccchhh-hccCCCCCCceeeeee----cC--CCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF--GTEHD-KAHCPLHL-KTGACRFGQRCSRVHF----YP--NKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l--dl~~d-~~~~~~~~-k~gacr~~dRcs~vhf----fP--~~AD~ylLk~m~~~P 145 (202)
-++.|+| |+|..+-..+++-|.. |+... .-.+.|.+ +.- -+...++-.... .| ...|+++.-.
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp~~~~FDtVF~MG----- 190 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLPNLGAFDTVFSMG----- 190 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhccccCCcCEEEEee-----
Confidence 3588998 9999999999999985 43322 11222211 110 011112222211 13 4478877666
Q ss_pred ccccc-CCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 146 FQWVL-TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 146 ~k~VL-HdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
|| |--+. ...|+.++..|++||.+++=-.|++.+
T Consensus 191 ---VLYHrr~P---l~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 191 ---VLYHRRSP---LDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred ---ehhccCCH---HHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 55 64444 456777788899999986544445543
No 119
>PRK01581 speE spermidine synthase; Validated
Probab=77.05 E-value=14 Score=34.64 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=56.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC------Cc-cccccccchh--hh-ccCCCC-CCceeee--e---ec---CCCcce
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF------GT-EHDKAHCPLH--LK-TGACRF-GQRCSRV--H---FY---PNKSCT 135 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l------dl-~~d~~~~~~~--~k-~gacr~-~dRcs~v--h---ff---P~~AD~ 135 (202)
..++.++| |.|.++.++++ +|.. ++ +.+...|..+ +. ...+.+ ..|++.+ | |. +...|+
T Consensus 151 PkrVLIIGgGdG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 34688887 77888888886 5542 22 2334455532 11 111122 5688776 3 33 334788
Q ss_pred eeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 136 LLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 136 ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
+++-- . .|. -+.-+.-.....|+.|+..|.|||.+++.
T Consensus 230 IIvDl-~-DP~---~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 230 IIIDF-P-DPA---TELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEcC-C-Ccc---ccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 87652 1 110 01112344578999999999999998776
No 120
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.84 E-value=1 Score=37.79 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=38.7
Q ss_pred eeeeeec-CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 123 CSRVHFY-PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 123 cs~vhff-P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
.+...+| +...|+++-.| |+-..+-++-...|+.|++-|+|||.|-+
T Consensus 37 As~e~~F~dns~d~iyaeH--------vlEHlt~~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEH--------VLEHLTYDEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred hhhhccCCCcchHHHHHHH--------HHHHHhHHHHHHHHHHHHHHhCcCcEEEE
Confidence 3333456 77789999999 66778889999999999999999999854
No 121
>PRK03612 spermidine synthase; Provisional
Probab=76.53 E-value=9.5 Score=36.70 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=55.6
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC------Cc-cccccccch--hhhc-cCCCC-CCceeee--e---ec---CCCcce
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF------GT-EHDKAHCPL--HLKT-GACRF-GQRCSRV--H---FY---PNKSCT 135 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l------dl-~~d~~~~~~--~~k~-gacr~-~dRcs~v--h---ff---P~~AD~ 135 (202)
..++.|+| |.|.++.++++ +|.. +. +...+.|.. ++.. ..+.+ ..|++++ | +. +...|+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 45789997 89999999986 5542 22 333444444 2211 11123 3477776 4 22 456888
Q ss_pred eeeehhcccccccccCCCCH----HHHHHHHHHHHhhCCCCCEEEEe
Q 044941 136 LLIKNMYNVKFQWVLTTWTD----DECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 136 ylLk~m~~~P~k~VLHdW~D----ee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
+++-- . ..+.. -...++++.+++.|+|||.+++.
T Consensus 377 Ii~D~-~--------~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 377 IIVDL-P--------DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEeC-C--------CCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 87752 1 11211 12357889999999999998764
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=75.71 E-value=6.2 Score=33.20 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEee
Q 044941 158 CKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 158 ~~~IL~~~~~AL~~gGrLlI~E 179 (202)
+..+|+.++..|+|||.+++..
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEE
Confidence 3578999999999999998853
No 123
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=75.67 E-value=12 Score=35.02 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=59.8
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC------Ccc-ccccccchhhhccCCCCCCceeee--ee--c----CCCcceeeee
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF------GTE-HDKAHCPLHLKTGACRFGQRCSRV--HF--Y----PNKSCTLLIK 139 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l------dl~-~d~~~~~~~~k~gacr~~dRcs~v--hf--f----P~~AD~ylLk 139 (202)
...+.|++ |.|..+..+++...+- |.. .-+..+....+. .++. .+++. +. + +...|.+++-
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r--~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR--LKLS-SIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH--cCCC-eEEEEECchhhhhhhhhccCCEEEEC
Confidence 35699996 8898888888875331 221 112223333322 1232 23343 21 1 2336777651
Q ss_pred ----h--hcc-cccccccCCCCHHHH-------HHHHHHHHhhCCCCCEEEEeeeccCCCCCchHHh
Q 044941 140 ----N--MYN-VKFQWVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPDDSNESQRT 192 (202)
Q Consensus 140 ----~--m~~-~P~k~VLHdW~Dee~-------~~IL~~~~~AL~~gGrLlI~E~vl~~~~~~~~~~ 192 (202)
+ ++. +|. +...|+.++. .+||++++..|+|||.|+..-.-+....++....
T Consensus 315 aPCsg~G~~~~~p~--~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~ 379 (431)
T PRK14903 315 APCTSLGTARNHPE--VLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVK 379 (431)
T ss_pred CCCCCCccccCChH--HHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHH
Confidence 1 111 222 2234555443 5789999999999999876665454433433333
No 124
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=75.35 E-value=14 Score=33.05 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=53.6
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Ccc-ccccccchhhhccCCCCCCceeee--eec--C---CCcceeeeehhccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTE-HDKAHCPLHLKTGACRFGQRCSRV--HFY--P---NKSCTLLIKNMYNV 144 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~-~d~~~~~~~~k~gacr~~dRcs~v--hff--P---~~AD~ylLk~m~~~ 144 (202)
..++|.+ |+|.++.+.+.....+ |.. .....|...++.. ++.+ +.+. ++. | ...|+++.---|..
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~--g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY--GIED-FFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh--CCCC-CeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 4699986 9999988876643332 322 2233344444322 3433 4443 332 3 33577665321110
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
. ...-.+...+-..++|+.+++.|++||+++++
T Consensus 261 ~-~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 261 S-TTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred c-ccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 0 00112223345688999999999999998765
No 125
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=74.73 E-value=1.5 Score=38.34 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCC------cceeecC-ChHHHHHHHHHHCCC
Q 044941 64 VDRPTSNPLPPQS------EAFADHQ-NAQQALETVAQQVPN 98 (202)
Q Consensus 64 ~~~~~~~~~~p~~------~~~~d~~-g~G~ll~~ll~~~P~ 98 (202)
..++||..+|-.- +-|+|.| |-|.++.+|+..+|.
T Consensus 43 ~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPd 84 (249)
T KOG3115|consen 43 QEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPD 84 (249)
T ss_pred HhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCcc
Confidence 4678988875321 3478888 999999999999999
No 126
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=74.46 E-value=17 Score=31.47 Aligned_cols=98 Identities=5% Similarity=-0.069 Sum_probs=60.3
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-Cccccccccchhhhc------------cCCCCCCceeee--eec--CC------C
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-GTEHDKAHCPLHLKT------------GACRFGQRCSRV--HFY--PN------K 132 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-dl~~d~~~~~~~~k~------------gacr~~dRcs~v--hff--P~------~ 132 (202)
.++...+ |.|.-+.-|+++-=+. +.......+..+++. ..+--+.++++. ||| +. .
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 4666666 8888888887752121 222221222222220 001124566666 777 21 2
Q ss_pred cceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 133 SCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 133 AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
.|.++=+. +++-.+.+.-.+..+.+...|+|||+++++-.-.
T Consensus 125 fD~VyDra--------~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 125 FDIWYDRG--------AYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cCeeeeeh--------hHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 57777776 5678888999999999999999999987776533
No 127
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=73.77 E-value=3 Score=36.62 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=36.2
Q ss_pred cceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCCC
Q 044941 133 SCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN 187 (202)
Q Consensus 133 AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~ 187 (202)
.|+++-.- +| -+-++.++.|++++.-|+|||+++.+|.+..+-+.
T Consensus 146 ~DtVV~Tl--------vL--CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~ 190 (252)
T KOG4300|consen 146 YDTVVCTL--------VL--CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGF 190 (252)
T ss_pred eeeEEEEE--------EE--eccCCHHHHHHHHHHhcCCCcEEEEEecccccchH
Confidence 57777664 33 34577899999999999999999999999887654
No 128
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=72.56 E-value=10 Score=34.26 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCC--CCCceeee--ee--cCCCcceeeeehhcccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACR--FGQRCSRV--HF--YPNKSCTLLIKNMYNVK 145 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr--~~dRcs~v--hf--fP~~AD~ylLk~m~~~P 145 (202)
..++|++ |.|.++..+++..-++ |. +..+..+....+..-+. ...++.+. +. ++...|+++...
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~----- 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD----- 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC-----
Confidence 5799998 9999999999853222 22 11222233322211000 01244444 32 245579888877
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
++|.+.++....+++.+.. +.+ |+++|
T Consensus 221 ---vL~H~p~~~~~~ll~~l~~-l~~-g~liI 247 (315)
T PLN02585 221 ---VLIHYPQDKADGMIAHLAS-LAE-KRLII 247 (315)
T ss_pred ---EEEecCHHHHHHHHHHHHh-hcC-CEEEE
Confidence 6677888888888888874 444 45544
No 129
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=72.24 E-value=12 Score=32.98 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=54.5
Q ss_pred ceeecC-ChHHHHHHHHHHCCCCCc-------cccccccchhhhccCCCCCCc---eeee-eecC-CCcceeeeehhccc
Q 044941 78 AFADHQ-NAQQALETVAQQVPNFGT-------EHDKAHCPLHLKTGACRFGQR---CSRV-HFYP-NKSCTLLIKNMYNV 144 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~ldl-------~~d~~~~~~~~k~gacr~~dR---cs~v-hffP-~~AD~ylLk~m~~~ 144 (202)
+++|+| |.|+.+-++..-+|.+.. +.....+...+... ...... -.+. ++.+ ...|+++++|
T Consensus 36 ~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~DLvi~s~---- 110 (274)
T PF09243_consen 36 SVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNNRNAEWRRVLYRDFLPFPPDDLVIASY---- 110 (274)
T ss_pred eEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-cccccchhhhhhhcccccCCCCcEEEEeh----
Confidence 699998 778877777777775421 11122222222211 111110 0111 2222 2259999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 145 KFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 145 P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
+|-+..++.-.++++++...+.+ .||++|.=.+
T Consensus 111 ----~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 111 ----VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred ----hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 66676667778888888887654 8888885433
No 130
>PLN02476 O-methyltransferase
Probab=71.30 E-value=14 Score=33.08 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=60.0
Q ss_pred ceeecC-ChHHHHHHHHHHCCCCC------c-cccccccchhhhccCCCCCCceeee--ee---cCC--------Cccee
Q 044941 78 AFADHQ-NAQQALETVAQQVPNFG------T-EHDKAHCPLHLKTGACRFGQRCSRV--HF---YPN--------KSCTL 136 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~ld------l-~~d~~~~~~~~k~gacr~~dRcs~v--hf---fP~--------~AD~y 136 (202)
.++++| +.|..+..+++..|.-+ . +.-...+..+++.. ++.+|+++. +. +|. ..|.+
T Consensus 121 ~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 121 RCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred eEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 588887 88888888888776422 1 22234455666554 678888877 21 221 23433
Q ss_pred eeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 137 LIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 137 lLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
+-|=+..+....|+.+.+-|++||.| |+|+++-.+
T Consensus 199 -------------FIDa~K~~Y~~y~e~~l~lL~~GGvI-V~DNvL~~G 233 (278)
T PLN02476 199 -------------FVDADKRMYQDYFELLLQLVRVGGVI-VMDNVLWHG 233 (278)
T ss_pred -------------EECCCHHHHHHHHHHHHHhcCCCcEE-EEecCccCC
Confidence 34556788899999999989988764 557776544
No 131
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=69.80 E-value=8.1 Score=35.17 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=28.2
Q ss_pred ccCCCCHHHHHHHHHHHHh-hCCCCCEEEE-eeec
Q 044941 149 VLTTWTDDECKLIMENCYK-ALPAGGKLIA-CEPV 181 (202)
Q Consensus 149 VLHdW~Dee~~~IL~~~~~-AL~~gGrLlI-~E~v 181 (202)
.+.|++++++..+|++++. .|.++|.+|| +|.+
T Consensus 166 siGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 166 SIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred cccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 6689999999999999999 9999998766 4444
No 132
>PRK14967 putative methyltransferase; Provisional
Probab=67.86 E-value=19 Score=30.16 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=51.4
Q ss_pred cceeecC-ChHHHHHHHHHHCC-CC---Cccc-cccccchhhhccCCCCCCceeee--ee---cC-CCcceeeeehhcc-
Q 044941 77 EAFADHQ-NAQQALETVAQQVP-NF---GTEH-DKAHCPLHLKTGACRFGQRCSRV--HF---YP-NKSCTLLIKNMYN- 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P-~l---dl~~-d~~~~~~~~k~gacr~~dRcs~v--hf---fP-~~AD~ylLk~m~~- 143 (202)
.+++|+| |.|.++..+++... ++ |... ....+....+. .+-+++++ ++ ++ ...|++++--=|.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~----~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALL----AGVDVDVRRGDWARAVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----hCCeeEEEECchhhhccCCCeeEEEECCCCCC
Confidence 4799998 99999888887533 21 2111 11222222211 12245554 33 34 3468776532110
Q ss_pred cccc-----cccCCCC-----HHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 144 VKFQ-----WVLTTWT-----DDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 144 ~P~k-----~VLHdW~-----Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
.+.. -....|. .+....+++.++..|++||+++++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 0000 0000121 12246788889999999999987654
No 133
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=67.55 E-value=17 Score=31.81 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=55.4
Q ss_pred ceeecC-ChHHHHHHHHHHCCCCC----cc---ccccccchhhhccCCCCCCceeee--e---ecCC---------Ccce
Q 044941 78 AFADHQ-NAQQALETVAQQVPNFG----TE---HDKAHCPLHLKTGACRFGQRCSRV--H---FYPN---------KSCT 135 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~ld----l~---~d~~~~~~~~k~gacr~~dRcs~v--h---ffP~---------~AD~ 135 (202)
.++++| +.|.-+..+++..|.=+ ++ .-...|..+++.. ++.+|++++ + .+|. ..|.
T Consensus 82 ~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 82 NTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred EEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 466666 66766666777665421 11 1123345555543 788888887 2 2232 2343
Q ss_pred eeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 136 LLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 136 ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
+ +-|-+.+.....|+.|.+-|++||- +|+|+++-.
T Consensus 160 i-------------FiDadK~~Y~~y~~~~l~ll~~GGv-iv~DNvl~~ 194 (247)
T PLN02589 160 I-------------FVDADKDNYINYHKRLIDLVKVGGV-IGYDNTLWN 194 (247)
T ss_pred E-------------EecCCHHHhHHHHHHHHHhcCCCeE-EEEcCCCCC
Confidence 3 3455678888999999988888765 667887643
No 134
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=66.96 E-value=6.9 Score=34.90 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=56.0
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC---Cc-cccccccchhhhccCCCCCCceeee---eec--CCCcceeeeehhcccccc
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF---GT-EHDKAHCPLHLKTGACRFGQRCSRV---HFY--PNKSCTLLIKNMYNVKFQ 147 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l---dl-~~d~~~~~~~~k~gacr~~dRcs~v---hff--P~~AD~ylLk~m~~~P~k 147 (202)
.++|+| |+|..+..++..|-+. |+ +..+..+....+...|+...+.+-- ++. +..-|+++...
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq------- 108 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ------- 108 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh-------
Confidence 689998 9996666666655554 43 3334455555555456666555533 233 45568888877
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 148 WVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 148 ~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
++|=++-++ .++.++.-|++.|.++.
T Consensus 109 -a~HWFdle~---fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 109 -AVHWFDLER---FYKEAYRVLRKDGGLIA 134 (261)
T ss_pred -hHHhhchHH---HHHHHHHHcCCCCCEEE
Confidence 678777665 56677778888665433
No 135
>PTZ00146 fibrillarin; Provisional
Probab=66.67 E-value=57 Score=29.53 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=46.9
Q ss_pred cceeecC-ChHHHHHHHHHHCCCCCccccccccc----hhhhccCCCCCCceeee--ee--------cCCCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNFGTEHDKAHCP----LHLKTGACRFGQRCSRV--HF--------YPNKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ldl~~d~~~~~----~~~k~gacr~~dRcs~v--hf--------fP~~AD~ylLk~m 141 (202)
..++|++ |.|.++..++.....-+.....+..+ ..++.. .....+..+ +. +....|++++-.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a--k~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv- 210 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA--KKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV- 210 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh--hhcCCCEEEECCccChhhhhcccCCCCEEEEeC-
Confidence 4688997 99999999998764322111111111 011110 000112222 21 112357765553
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 142 YNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 142 ~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
. ..++...++.+++.-|+++|.++|.
T Consensus 211 -------a----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 -------A----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -------C----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 1 1235556667889899999999883
No 136
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=64.90 E-value=7 Score=33.11 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=56.2
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC---Ccc-ccccccchhhhccCCCCCCceeeeee----cCCCcceeeeehhcccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF---GTE-HDKAHCPLHLKTGACRFGQRCSRVHF----YPNKSCTLLIKNMYNVKFQ 147 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l---dl~-~d~~~~~~~~k~gacr~~dRcs~vhf----fP~~AD~ylLk~m~~~P~k 147 (202)
.++.|+| |.|.-+.-++++-=.. |.. ..++.+....+.. ++.-++...++ +|...|+++..-
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~--~l~i~~~~~Dl~~~~~~~~yD~I~st~------- 102 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEE--GLDIRTRVADLNDFDFPEEYDFIVSTV------- 102 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHT--T-TEEEEE-BGCCBS-TTTEEEEEEES-------
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhc--CceeEEEEecchhccccCCcCEEEEEE-------
Confidence 4789998 9999999888852111 111 1111111111111 23222222242 366678877554
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 148 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 148 ~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
|++-...+...+|++++.+++.|||.+++...+
T Consensus 103 -v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 103 -VFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp -SGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred -EeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 556677888899999999999999988776554
No 137
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=63.08 E-value=6.5 Score=35.40 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=51.7
Q ss_pred ceeecC-ChHHHHHHHHHHCCC--C--Cc-cccccccchhhhccCCCCCCceeee--eecC-CCcceeeeehhccccccc
Q 044941 78 AFADHQ-NAQQALETVAQQVPN--F--GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFYP-NKSCTLLIKNMYNVKFQW 148 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~--l--dl-~~d~~~~~~~~k~gacr~~dRcs~v--hffP-~~AD~ylLk~m~~~P~k~ 148 (202)
++.|+| |+|-|+...++.-.. + |. +.....|..+.+.. ++.+++... .-.+ ..+|++ +.|++
T Consensus 164 ~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N--~~~~~~~v~~~~~~~~~~~dlv-vANI~------ 234 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN--GVEDRIEVSLSEDLVEGKFDLV-VANIL------ 234 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT--T-TTCEEESCTSCTCCS-EEEE-EEES-------
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc--CCCeeEEEEEecccccccCCEE-EECCC------
Confidence 577776 888777777764433 1 22 22234445555444 567777654 1223 335665 46643
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 149 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 149 VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
.+-...++..+...|.|||.+++- -++.+
T Consensus 235 ------~~vL~~l~~~~~~~l~~~G~lIlS-GIl~~ 263 (295)
T PF06325_consen 235 ------ADVLLELAPDIASLLKPGGYLILS-GILEE 263 (295)
T ss_dssp ------HHHHHHHHHHCHHHEEEEEEEEEE-EEEGG
T ss_pred ------HHHHHHHHHHHHHhhCCCCEEEEc-cccHH
Confidence 355567777888888899888764 44443
No 138
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=62.39 E-value=13 Score=32.13 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=51.8
Q ss_pred ceeecC-ChHHHHHHHHHH-CCC-C-Cc---cccccccchhhhccCCCCCCceeee--e-----ecCCCcceeeeehhcc
Q 044941 78 AFADHQ-NAQQALETVAQQ-VPN-F-GT---EHDKAHCPLHLKTGACRFGQRCSRV--H-----FYPNKSCTLLIKNMYN 143 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~-~P~-l-dl---~~d~~~~~~~~k~gacr~~dRcs~v--h-----ffP~~AD~ylLk~m~~ 143 (202)
+++|.| |+|++|..|++. ++. | |+ +..+..|. .+.. +-++.+.++++ | |++...|+++=|.-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe-~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAE-RDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHH-hcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 689998 999999999985 444 3 22 22222222 1111 12566667776 4 3355577777665332
Q ss_pred cccccccC-CCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 144 VKFQWVLT-TWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 144 ~P~k~VLH-dW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
+.-|| +-.+..-.-.+..+..-|.|+|..+|..
T Consensus 148 ---AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 148 ---AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred ---eeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 11233 2222222334445555566677666643
No 139
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.84 E-value=8.7 Score=36.35 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=34.4
Q ss_pred CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 130 PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 130 P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
|. +|.|.+--+.+ -.+|+=++....-.+++...-+.+||.|+|||.=
T Consensus 181 p~-ad~ytl~i~~~----eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 181 PA-ADLYTLAIVLD----ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred Cc-cceeehhhhhh----hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 44 67666553211 1457777787888999999999999999999953
No 140
>PRK00536 speE spermidine synthase; Provisional
Probab=59.43 E-value=14 Score=32.80 Aligned_cols=80 Identities=6% Similarity=-0.080 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHCCC-C---Cc-cccccccchhhhccCCCCC-Cceeeeeec----CCCcceeeeehhcccccccccCC
Q 044941 83 QNAQQALETVAQQVPN-F---GT-EHDKAHCPLHLKTGACRFG-QRCSRVHFY----PNKSCTLLIKNMYNVKFQWVLTT 152 (202)
Q Consensus 83 ~g~G~ll~~ll~~~P~-l---dl-~~d~~~~~~~~k~gacr~~-dRcs~vhff----P~~AD~ylLk~m~~~P~k~VLHd 152 (202)
||.|..+.++++ ||. . ++ +.+.+.|..++..-+|.+. .|++.+-++ ....|++++-..|
T Consensus 81 GGDGg~~REvLk-h~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~---------- 149 (262)
T PRK00536 81 GFDLELAHQLFK-YDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEP---------- 149 (262)
T ss_pred CCchHHHHHHHC-cCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCC----------
Confidence 599999999996 454 2 22 3456777776654334453 466665333 2457888876522
Q ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 153 WTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 153 W~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
+ ...++.|+++|.++|-++..
T Consensus 150 -~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 150 -D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred -C----hHHHHHHHHhcCCCcEEEEC
Confidence 1 46678889999999987654
No 141
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=59.12 E-value=35 Score=30.94 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.4
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 149 VLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 149 VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
.|-+.+.++|...|..++.+|.||--+++
T Consensus 163 tlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 163 TLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred cccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 56789999999999999999999977654
No 142
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=58.25 E-value=8.8 Score=32.78 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCCcceeecC-ChHHHHHHHHHHCCCC---CccccccccchhhhccCCCCCCceeee--------eecCC-Ccceeeeeh
Q 044941 74 PQSEAFADHQ-NAQQALETVAQQVPNF---GTEHDKAHCPLHLKTGACRFGQRCSRV--------HFYPN-KSCTLLIKN 140 (202)
Q Consensus 74 p~~~~~~d~~-g~G~ll~~ll~~~P~l---dl~~d~~~~~~~~k~gacr~~dRcs~v--------hffP~-~AD~ylLk~ 140 (202)
|+ .++.|.| |.|.++..|.+.. +. |++-+.+.+....+.| ++++ ..||. ..|.++|+.
T Consensus 13 pg-srVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~rG-------v~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 13 PG-SRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVARG-------VSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CC-CEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHcC-------CCEEECCHHHhHhhCCCCCccEEehHh
Confidence 44 4799999 9999998887753 42 5555544443333332 2332 24774 469999998
No 143
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=56.84 E-value=21 Score=28.42 Aligned_cols=22 Identities=5% Similarity=0.093 Sum_probs=18.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCC
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN 98 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~ 98 (202)
..++|+| |.|.++..++++..+
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~ 37 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAAR 37 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCe
Confidence 4699998 999999999987433
No 144
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=56.61 E-value=5.8 Score=35.34 Aligned_cols=24 Identities=42% Similarity=0.930 Sum_probs=21.4
Q ss_pred ccccchhhhccCCCCCCceeeeee
Q 044941 105 KAHCPLHLKTGACRFGQRCSRVHF 128 (202)
Q Consensus 105 ~~~~~~~~k~gacr~~dRcs~vhf 128 (202)
...|..|.++|.|.+|.||.|.|-
T Consensus 177 t~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 177 TKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CcCCCccccCCCCCCCCcCeecCC
Confidence 467999999999999999999974
No 145
>smart00356 ZnF_C3H1 zinc finger.
Probab=56.40 E-value=5.8 Score=22.04 Aligned_cols=20 Identities=40% Similarity=1.011 Sum_probs=16.4
Q ss_pred ccchhhhccCCCCCCceeeee
Q 044941 107 HCPLHLKTGACRFGQRCSRVH 127 (202)
Q Consensus 107 ~~~~~~k~gacr~~dRcs~vh 127 (202)
.|..+ +.|.|..+++|.+.|
T Consensus 6 ~C~~~-~~g~C~~g~~C~~~H 25 (27)
T smart00356 6 LCKFF-KRGYCPYGDRCKFAH 25 (27)
T ss_pred cCcCc-cCCCCCCCCCcCCCC
Confidence 57777 778899999998765
No 146
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=54.34 E-value=59 Score=29.54 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=48.4
Q ss_pred CcceeecC-ChHHHHHHHHHHCCCC----Ccccc---ccccchhhhccCCCCCCceeee--eec---C--CCcceeeeeh
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPNF----GTEHD---KAHCPLHLKTGACRFGQRCSRV--HFY---P--NKSCTLLIKN 140 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~l----dl~~d---~~~~~~~~k~gacr~~dRcs~v--hff---P--~~AD~ylLk~ 140 (202)
...++|+| |.|.++..+++..+.- ++..+ ...+...++. .++ ++++++ +.. + ...|++++..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~--~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR--LGI-ENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH--cCC-CcEEEEeCChhhcccccCCccEEEECC
Confidence 35789997 9999999999887642 22222 1223332222 122 345555 321 2 2367777654
Q ss_pred hcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 141 MYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 141 m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
-+++ +...+++.|++||++++...
T Consensus 158 --------g~~~--------ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 158 --------GVDE--------VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred --------chHH--------hHHHHHHhcCCCCEEEEEeC
Confidence 1111 23345678999999877543
No 147
>PLN02823 spermine synthase
Probab=44.38 E-value=73 Score=29.14 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=51.6
Q ss_pred ceeecC-ChHHHHHHHHHHCCC--C---Cc-cccccccchhhhccCCCC-CCceeee--e---ec---CCCcceeeeehh
Q 044941 78 AFADHQ-NAQQALETVAQQVPN--F---GT-EHDKAHCPLHLKTGACRF-GQRCSRV--H---FY---PNKSCTLLIKNM 141 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~--l---dl-~~d~~~~~~~~k~gacr~-~dRcs~v--h---ff---P~~AD~ylLk~m 141 (202)
++.-+| |.|.++.++++..+. + ++ +.+...|..++....+.+ ..|++.+ | |. +...|++++--
T Consensus 106 ~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~- 184 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL- 184 (336)
T ss_pred EEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC-
Confidence 455566 788888888874332 1 22 334455666654321223 4677776 3 22 34578887652
Q ss_pred cccccccccCCCCH-----HHHHHHHH-HHHhhCCCCCEEEE
Q 044941 142 YNVKFQWVLTTWTD-----DECKLIME-NCYKALPAGGKLIA 177 (202)
Q Consensus 142 ~~~P~k~VLHdW~D-----ee~~~IL~-~~~~AL~~gGrLlI 177 (202)
+ ..++. =...+.|+ .|+..|.++|-+++
T Consensus 185 ~--------dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 185 A--------DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred C--------CccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 1 11111 11346676 78899999997654
No 148
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=43.71 E-value=24 Score=29.95 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred ceeecC-ChHHHHHHHHHHCCCCCc----c---ccccccchhhhccCCCCCCceeee--e---ecC----C----Cccee
Q 044941 78 AFADHQ-NAQQALETVAQQVPNFGT----E---HDKAHCPLHLKTGACRFGQRCSRV--H---FYP----N----KSCTL 136 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~ldl----~---~d~~~~~~~~k~gacr~~dRcs~v--h---ffP----~----~AD~y 136 (202)
.++++| +.|.-+..++++.|.=+. + .-...+..+++.. ++++|++++ + ++| . ..|.+
T Consensus 48 ~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 48 RVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp EEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred eEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 467776 888888888888876321 1 1123345555543 788899988 2 222 1 24666
Q ss_pred eeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccC
Q 044941 137 LIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 183 (202)
Q Consensus 137 lLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~ 183 (202)
++- -+..+....|+.+.+-|++|| ++|+|+++-
T Consensus 126 FiD-------------a~K~~y~~y~~~~~~ll~~gg-vii~DN~l~ 158 (205)
T PF01596_consen 126 FID-------------ADKRNYLEYFEKALPLLRPGG-VIIADNVLW 158 (205)
T ss_dssp EEE-------------STGGGHHHHHHHHHHHEEEEE-EEEEETTTG
T ss_pred EEc-------------ccccchhhHHHHHhhhccCCe-EEEEccccc
Confidence 554 356677888888888777665 556677654
No 149
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=42.65 E-value=17 Score=32.58 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccCCCCH-HHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 149 VLTTWTD-DECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 149 VLHdW~D-ee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
|||-..| ++...|++.++++|+||+.|.|--..-
T Consensus 159 vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 159 VLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp -GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred eeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 6777765 889999999999999999987776544
No 150
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=41.83 E-value=1.3e+02 Score=28.64 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=53.8
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--eec----CC--Ccceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--HFY----PN--KSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--hff----P~--~AD~ylLk~m 141 (202)
..++|++ |+|.++..+++++|.. |. +.....|....+ ..+.+++++ +++ |. ..|+++. |
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~----~~g~rV~fi~gDl~e~~l~~~~~FDLIVS-N- 326 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA----DLGARVEFAHGSWFDTDMPSEGKWDIIVS-N- 326 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH----HcCCcEEEEEcchhccccccCCCccEEEE-C-
Confidence 4799998 9999999999998874 32 233344444433 233467776 443 21 2466554 2
Q ss_pred ccccccc------cc-----C-------CC--CHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 142 YNVKFQW------VL-----T-------TW--TDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 142 ~~~P~k~------VL-----H-------dW--~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
|+.. .+ | .. ..+-..+|++.+.+-|.|||.++ +|.
T Consensus 327 ---PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li-lEi 381 (423)
T PRK14966 327 ---PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL-LEH 381 (423)
T ss_pred ---CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE-EEE
Confidence 3310 00 0 11 11234577777778899999864 443
No 151
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=39.61 E-value=45 Score=29.65 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=51.6
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-----Cc-cccccccchhhhccCCCCCCceeee--e---ecCC-Ccceeeeehhcc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-----GT-EHDKAHCPLHLKTGACRFGQRCSRV--H---FYPN-KSCTLLIKNMYN 143 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-----dl-~~d~~~~~~~~k~gacr~~dRcs~v--h---ffP~-~AD~ylLk~m~~ 143 (202)
..++|.| |.|+...-|++++|.- |. +..++.+... .-.|+|. | .-|. .+|++ +.|-
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~p~~~~dll-faNA-- 100 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWKPEQPTDLL-FANA-- 100 (257)
T ss_pred ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcCCCCccchh-hhhh--
Confidence 4699999 9999999999999993 32 2223333222 2245554 3 3464 35555 4441
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIAC 178 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~ 178 (202)
++| |=.+. .++|.+....|.|||-|-|.
T Consensus 101 -----vlq-WlpdH-~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 101 -----VLQ-WLPDH-PELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred -----hhh-hcccc-HHHHHHHHHhhCCCceEEEE
Confidence 333 33222 46788888899999987543
No 152
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=39.45 E-value=38 Score=33.01 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=55.6
Q ss_pred eeecC-ChHHHHHHHHHHCCCC--C-cccccccc-chhhhccC-CCCCCceeeeeecCCCcceeeeehhcccccccccCC
Q 044941 79 FADHQ-NAQQALETVAQQVPNF--G-TEHDKAHC-PLHLKTGA-CRFGQRCSRVHFYPNKSCTLLIKNMYNVKFQWVLTT 152 (202)
Q Consensus 79 ~~d~~-g~G~ll~~ll~~~P~l--d-l~~d~~~~-~~~~k~ga-cr~~dRcs~vhffP~~AD~ylLk~m~~~P~k~VLHd 152 (202)
+.|+. |.|.|++++.. .|=- . .+...+.. +..+..|= .-+-|-|+..++||...|++=..++|. .
T Consensus 369 VMDMnAg~GGFAAAL~~-~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs--------~ 439 (506)
T PF03141_consen 369 VMDMNAGYGGFAAALID-DPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS--------L 439 (506)
T ss_pred eeeecccccHHHHHhcc-CCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh--------h
Confidence 56664 99999999974 3321 1 11111111 11111110 034567777677898789888777553 3
Q ss_pred CC-HHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 153 WT-DDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 153 W~-Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
|. .-+...||-+.-.-|+|+|.++|=|.+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 33 234557777788889999999887753
No 153
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=37.08 E-value=56 Score=27.93 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=22.9
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC-Cccccc
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF-GTEHDK 105 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l-dl~~d~ 105 (202)
..++|+| |.|.++..++++.+.+ +.+.+.
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~ 61 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEIDP 61 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECCH
Confidence 4699998 9999999999998875 344443
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=36.82 E-value=72 Score=25.85 Aligned_cols=96 Identities=10% Similarity=0.081 Sum_probs=52.4
Q ss_pred CcceeecC-ChHHHHHHHHHHCC-C-C---CccccccccchhhhccCCCCCCceeee--e----e----c-CCCcceeee
Q 044941 76 SEAFADHQ-NAQQALETVAQQVP-N-F---GTEHDKAHCPLHLKTGACRFGQRCSRV--H----F----Y-PNKSCTLLI 138 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P-~-l---dl~~d~~~~~~~~k~gacr~~dRcs~v--h----f----f-P~~AD~ylL 138 (202)
+..+++.| |.|.....+++..+ . + |.+..++.+....+...-....++++. + . + +...|+++.
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila 125 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA 125 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence 35799997 88877777777632 2 1 433344444444332100133455554 1 1 1 345899999
Q ss_pred ehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 139 KNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 139 k~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
.. |+. +++....+++.+...+.++|.+++.-..
T Consensus 126 sD--------v~Y--~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 126 SD--------VLY--DEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp ES----------S---GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ec--------ccc--hHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 98 444 5788888889999999998887666544
No 155
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=36.70 E-value=37 Score=29.83 Aligned_cols=92 Identities=13% Similarity=0.330 Sum_probs=54.1
Q ss_pred CCCcceeecC-ChHHHHHHHHHHC-CC-----CCcccc-ccccchhhhccCCCCCCceeee--ee----cC----CCcce
Q 044941 74 PQSEAFADHQ-NAQQALETVAQQV-PN-----FGTEHD-KAHCPLHLKTGACRFGQRCSRV--HF----YP----NKSCT 135 (202)
Q Consensus 74 p~~~~~~d~~-g~G~ll~~ll~~~-P~-----ldl~~d-~~~~~~~~k~gacr~~dRcs~v--hf----fP----~~AD~ 135 (202)
|++ .+++-| |+|.|+..+++.. |+ |+.-.+ ...+...++.. ++.+.+++. |. |+ ..+|.
T Consensus 40 pG~-~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 40 PGS-RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp TT--EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCC-EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCCCCceeEecceecccccccccCcccE
Confidence 444 688887 9999999999864 44 122111 23344444443 567777776 32 33 23677
Q ss_pred eeeehhcccccccccCCCCHHHHHHHHHHHHhhC-CCCCEEEEeeeccC
Q 044941 136 LLIKNMYNVKFQWVLTTWTDDECKLIMENCYKAL-PAGGKLIACEPVLP 183 (202)
Q Consensus 136 ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL-~~gGrLlI~E~vl~ 183 (202)
++|- .-..|. .+..++++| ++||+|.++-..++
T Consensus 117 vfLD---------lp~Pw~------~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 117 VFLD---------LPDPWE------AIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp EEEE---------SSSGGG------GHHHHHHHE-EEEEEEEEEESSHH
T ss_pred EEEe---------CCCHHH------HHHHHHHHHhcCCceEEEECCCHH
Confidence 7665 223453 456677788 78888877765544
No 156
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=36.04 E-value=1.2e+02 Score=27.68 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=52.2
Q ss_pred CcceeecC-ChHHHHHHHHHHCCC--C--Cc-cccccccchhhhccCCCCCCceeeeee----cCC--Ccceeeeehhcc
Q 044941 76 SEAFADHQ-NAQQALETVAQQVPN--F--GT-EHDKAHCPLHLKTGACRFGQRCSRVHF----YPN--KSCTLLIKNMYN 143 (202)
Q Consensus 76 ~~~~~d~~-g~G~ll~~ll~~~P~--l--dl-~~d~~~~~~~~k~gacr~~dRcs~vhf----fP~--~AD~ylLk~m~~ 143 (202)
...+.|+| |+|-|+.+.++.-.. + |+ |..+..+....... ++..+.....| .|. .+|++ ..|++-
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N--~v~~~~~~~~~~~~~~~~~~~~DvI-VANILA 239 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN--GVELLVQAKGFLLLEVPENGPFDVI-VANILA 239 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc--CCchhhhcccccchhhcccCcccEE-EehhhH
Confidence 35689998 999999998886555 2 32 22233344433222 22211111112 233 35665 456431
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
+=.+++...++..++|||.++.-- |+.+
T Consensus 240 ------------~vl~~La~~~~~~lkpgg~lIlSG-Il~~ 267 (300)
T COG2264 240 ------------EVLVELAPDIKRLLKPGGRLILSG-ILED 267 (300)
T ss_pred ------------HHHHHHHHHHHHHcCCCceEEEEe-ehHh
Confidence 334577888899999998876544 4444
No 157
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=35.28 E-value=52 Score=30.03 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeee
Q 044941 157 ECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 157 e~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
+....++.++.-|.+||.+.|.|.
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEeh
Confidence 345578888999999999999985
No 158
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=35.27 E-value=35 Score=33.96 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=28.8
Q ss_pred CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEE---EEee
Q 044941 130 PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKL---IACE 179 (202)
Q Consensus 130 P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrL---lI~E 179 (202)
|..+.+++|+|||. .-+++++ +..++++.+.++|.| +|++
T Consensus 511 p~~S~vVvL~NMv~------~~elded----l~eDV~eEC~K~G~V~~v~I~~ 553 (612)
T TIGR01645 511 TNRSNVIVLRNMVT------PQDIDEF----LEGEIREECGKFGVVDRVIINF 553 (612)
T ss_pred CCCCCEEEEeCCCC------hHHhHHH----HHHHHHHHhhcCceeEEEEEec
Confidence 77789999999973 2233332 667888889999976 5555
No 159
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=35.20 E-value=42 Score=29.72 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=20.2
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF 99 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l 99 (202)
.++|++ |+|.++..++.+.|+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~ 135 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDA 135 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCC
Confidence 589998 9999999999999974
No 160
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=34.79 E-value=74 Score=30.21 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=50.0
Q ss_pred ceeecC-ChHHHHHHHHHHCCC--CCcc--ccccccchhhhccCCCCCCceeee-----ee-cCCCcceee---eehhcc
Q 044941 78 AFADHQ-NAQQALETVAQQVPN--FGTE--HDKAHCPLHLKTGACRFGQRCSRV-----HF-YPNKSCTLL---IKNMYN 143 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~--ldl~--~d~~~~~~~~k~gacr~~dRcs~v-----hf-fP~~AD~yl---Lk~m~~ 143 (202)
-++|+| |+|.++.-.+++--. +..+ .....++...+.. .+.+|++++ +. +|..+|+++ |+.|+
T Consensus 180 iVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL- 256 (517)
T KOG1500|consen 180 IVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASN--NLADRITVIPGKIEDIELPEKVDVIISEPMGYML- 256 (517)
T ss_pred EEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcC--CccceEEEccCccccccCchhccEEEeccchhhh-
Confidence 378887 888777666654322 2221 2223334444433 789999998 22 598899987 33322
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhCCCCCEE
Q 044941 144 VKFQWVLTTWTDDECKLIMENCYKALPAGGKL 175 (202)
Q Consensus 144 ~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrL 175 (202)
- .|...+-+-..++=|.|.|+.
T Consensus 257 -------~---NERMLEsYl~Ark~l~P~GkM 278 (517)
T KOG1500|consen 257 -------V---NERMLESYLHARKWLKPNGKM 278 (517)
T ss_pred -------h---hHHHHHHHHHHHhhcCCCCcc
Confidence 1 255555555566667777664
No 161
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=34.78 E-value=31 Score=30.53 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=32.7
Q ss_pred Ccceeeeehhccccccccc--CCCCHHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 132 KSCTLLIKNMYNVKFQWVL--TTWTDDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 132 ~AD~ylLk~m~~~P~k~VL--HdW~Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
.+|+++..- +| --=+.++..+.++++...|+|||.++++..+
T Consensus 158 ~~D~v~s~f--------cLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 158 KFDCVISSF--------CLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp SEEEEEEES--------SHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred chhhhhhhH--------HHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 488887664 44 2245778999999999999999999988764
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=34.05 E-value=1.9e+02 Score=25.08 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=58.5
Q ss_pred cceeecC-ChHHHHHHHHHHCCC---C---Cccc-cccccchhhhccCCCCCCceeeee----------ecCCCcceeee
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN---F---GTEH-DKAHCPLHLKTGACRFGQRCSRVH----------FYPNKSCTLLI 138 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~---l---dl~~-d~~~~~~~~k~gacr~~dRcs~vh----------ffP~~AD~ylL 138 (202)
..++++| +.|.-+.-++..-|. + +... -...+..+++.. ++.+|+.... +.....|.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~~~~i~~~~~gdal~~l~~~~~~~fDl--- 135 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GVDDRIELLLGGDALDVLSRLLDGSFDL--- 135 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CCcceEEEEecCcHHHHHHhccCCCccE---
Confidence 4577776 777777777777773 1 2221 123455566654 7888866552 01122344
Q ss_pred ehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 139 KNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 139 k~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
|+-|-+..+..+.|..+..-|++|| |+|+|+++-.+
T Consensus 136 ----------iFIDadK~~yp~~le~~~~lLr~GG-liv~DNvl~~G 171 (219)
T COG4122 136 ----------VFIDADKADYPEYLERALPLLRPGG-LIVADNVLFGG 171 (219)
T ss_pred ----------EEEeCChhhCHHHHHHHHHHhCCCc-EEEEeecccCC
Confidence 4445677888889999998899876 55778887765
No 163
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=33.94 E-value=1.3e+02 Score=26.28 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCC-CCEEEEee
Q 044941 130 PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPA-GGKLIACE 179 (202)
Q Consensus 130 P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~-gGrLlI~E 179 (202)
|...|++|++.+| ++...+.+++. +...+.. |..|+|.+
T Consensus 140 ~~~~Dl~LagDlf----------y~~~~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 140 PPAFDLLLAGDLF----------YNHTEADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred CcceeEEEeecee----------cCchHHHHHHH-HHHHHHhCCCEEEEeC
Confidence 6779999999954 45566666666 6556654 55666554
No 164
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=33.05 E-value=81 Score=26.76 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=50.0
Q ss_pred cceeecC-ChHHHHHHHHHHCCC---CCccccccccc------hhhhccCC-CCC---Cceeee--eec-C-------CC
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN---FGTEHDKAHCP------LHLKTGAC-RFG---QRCSRV--HFY-P-------NK 132 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~---ldl~~d~~~~~------~~~k~gac-r~~---dRcs~v--hff-P-------~~ 132 (202)
..|+|.| |.|.+....+..++- .|++-....+. ..++.. + .++ .++.+. +|+ + ..
T Consensus 44 dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~-~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR-MKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH-HHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH-HHHhhcccccceeeccCccccHhHhhhhcC
Confidence 3599998 999988877776653 24433222221 111110 0 112 234443 353 1 45
Q ss_pred cceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCCCC
Q 044941 133 SCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN 187 (202)
Q Consensus 133 AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~ 187 (202)
||++++.| .-++++-.. .|.+....|++|.+||....+.+....
T Consensus 123 AdvVf~Nn----------~~F~~~l~~-~L~~~~~~lk~G~~IIs~~~~~~~~~~ 166 (205)
T PF08123_consen 123 ADVVFVNN----------TCFDPDLNL-ALAELLLELKPGARIISTKPFCPRRRS 166 (205)
T ss_dssp -SEEEE------------TTT-HHHHH-HHHHHHTTS-TT-EEEESS-SS-TT--
T ss_pred CCEEEEec----------cccCHHHHH-HHHHHHhcCCCCCEEEECCCcCCCCcc
Confidence 88888887 346555444 457777889999999999988887644
No 165
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=31.73 E-value=19 Score=30.12 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=24.6
Q ss_pred CCCCCCCCCCcceeecC-ChHHHHHHHHHHCCCC
Q 044941 67 PTSNPLPPQSEAFADHQ-NAQQALETVAQQVPNF 99 (202)
Q Consensus 67 ~~~~~~~p~~~~~~d~~-g~G~ll~~ll~~~P~l 99 (202)
+|....+...--++|+| |.|.++.++++++|+.
T Consensus 9 ~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~Pd~ 42 (195)
T PF02390_consen 9 DWQEIFGNDNPLILEIGCGKGEFLIELAKRNPDI 42 (195)
T ss_dssp CHHHHHTSCCEEEEEET-TTSHHHHHHHHHSTTS
T ss_pred CHHHHcCCCCCeEEEecCCCCHHHHHHHHHCCCC
Confidence 45444432222589998 9999999999999994
No 166
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=31.33 E-value=82 Score=29.40 Aligned_cols=55 Identities=9% Similarity=0.239 Sum_probs=40.7
Q ss_pred Cceeeee-----ec---C-CCcceeeeehhcccccccccCCC-CHHHHHHHHHHHHhhCCCCCEEEEeeeccCC
Q 044941 121 QRCSRVH-----FY---P-NKSCTLLIKNMYNVKFQWVLTTW-TDDECKLIMENCYKALPAGGKLIACEPVLPD 184 (202)
Q Consensus 121 dRcs~vh-----ff---P-~~AD~ylLk~m~~~P~k~VLHdW-~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~ 184 (202)
+|++.++ ++ | ..-|.++|.... || +++++.+.++.+...++|||||+.=-...+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~---------Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHM---------DWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchh---------hhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 7887773 22 4 446888888732 65 5778889999999999999999776655443
No 167
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=31.07 E-value=1.5e+02 Score=29.76 Aligned_cols=96 Identities=8% Similarity=0.090 Sum_probs=56.4
Q ss_pred cceeecC-ChHHHHHHHHHHCCC-C---Cc-cccccccchhhhccCCCCC-Cceeee--eec------CCCcceeeeehh
Q 044941 77 EAFADHQ-NAQQALETVAQQVPN-F---GT-EHDKAHCPLHLKTGACRFG-QRCSRV--HFY------PNKSCTLLIKNM 141 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~-l---dl-~~d~~~~~~~~k~gacr~~-dRcs~v--hff------P~~AD~ylLk~m 141 (202)
.++.|++ |+|.++..+++.--. . |. +..+..+...++.. ++. ++++++ +.+ +...|++++-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n--g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD-- 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN--GLSGRQHRLIQADCLAWLKEAREQFDLIFID-- 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCccceEEEEccHHHHHHHcCCCcCEEEEC--
Confidence 4699986 999999999875322 1 22 22233444444432 444 578877 432 2346777663
Q ss_pred cccccccccC-----CCC-HHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 142 YNVKFQWVLT-----TWT-DDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 142 ~~~P~k~VLH-----dW~-Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|+.+.-. .|+ ......+++.+.+-|.|||.|+++-
T Consensus 616 ---PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 616 ---PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred ---CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3322211 122 2345677888888899999886653
No 168
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=28.80 E-value=2.5e+02 Score=26.52 Aligned_cols=153 Identities=11% Similarity=0.111 Sum_probs=85.6
Q ss_pred ccCCCCCcccccccCcchhhccCCcEEEEecccccCCCCCCCCCCCC--CCCCCCCCCCCCCCcceeec-CChHHHHHHH
Q 044941 16 NECDEDDDWESVEEGPAEIIWQGNEIIIRKKKVRVPKKDANPLSKKE--DVDRPTSNPLPPQSEAFADH-QNAQQALETV 92 (202)
Q Consensus 16 ~~~~~~~~we~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~d~-~g~G~ll~~l 92 (202)
..+...+.|+|-++-++.++.+.|.+-|....+. -+++..=- -+++=|-.-+.. +-.|.|+ +=+|.++...
T Consensus 162 ~~~~~~~~~~~g~~~~~~~~i~E~g~kf~v~~~~-----g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~A 235 (393)
T COG1092 162 EGLKGRSQYLKGEEAPEEVVIEENGVKFLVDLVD-----GLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHA 235 (393)
T ss_pred hcccccccccccccCCCcEEEEeCCeEEEEecCC-----cccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHH
Confidence 3445667888888888888888888777665551 11111100 011111111111 1234554 4566666666
Q ss_pred HHHCC-C---CCc-cccccccchhhhccCCCC-CCceeee--eec---------CCCcceeeeehhccccccccc---CC
Q 044941 93 AQQVP-N---FGT-EHDKAHCPLHLKTGACRF-GQRCSRV--HFY---------PNKSCTLLIKNMYNVKFQWVL---TT 152 (202)
Q Consensus 93 l~~~P-~---ldl-~~d~~~~~~~~k~gacr~-~dRcs~v--hff---------P~~AD~ylLk~m~~~P~k~VL---Hd 152 (202)
+..-- . +|. ...+.-|...++.. ++ .+|..++ |.| -...|++++- |+.+.- ..
T Consensus 236 a~gGA~~vt~VD~S~~al~~a~~N~~LN--g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD-----PPsF~r~k~~~ 308 (393)
T COG1092 236 ALGGASEVTSVDLSKRALEWARENAELN--GLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD-----PPSFARSKKQE 308 (393)
T ss_pred HhcCCCceEEEeccHHHHHHHHHHHHhc--CCCccceeeehhhHHHHHHHHHhcCCcccEEEEC-----CcccccCcccc
Confidence 65433 1 232 23445566665544 44 4566776 422 2357888875 553332 23
Q ss_pred CC-HHHHHHHHHHHHhhCCCCCEEEEeeec
Q 044941 153 WT-DDECKLIMENCYKALPAGGKLIACEPV 181 (202)
Q Consensus 153 W~-Dee~~~IL~~~~~AL~~gGrLlI~E~v 181 (202)
|+ ..+-..++..+.+-|.|||.++++-+-
T Consensus 309 ~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 309 FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 66 566778888888889999999887653
No 169
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=26.09 E-value=43 Score=30.53 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=50.5
Q ss_pred cceeecC-ChHHHHHHHHHHCCCC----Ccc-ccccccchhhhccCCCC---CCceeee-eec-------------C-C-
Q 044941 77 EAFADHQ-NAQQALETVAQQVPNF----GTE-HDKAHCPLHLKTGACRF---GQRCSRV-HFY-------------P-N- 131 (202)
Q Consensus 77 ~~~~d~~-g~G~ll~~ll~~~P~l----dl~-~d~~~~~~~~k~gacr~---~dRcs~v-hff-------------P-~- 131 (202)
..+.|++ |.|.-+....++.... |+. ..+..|....+...-+. ..++.+. .|+ + .
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~ 143 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRS 143 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTT
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccC
Confidence 5799998 8888888888876663 332 23344544442100000 1122222 121 1 1
Q ss_pred -CcceeeeehhcccccccccCC--CCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 132 -KSCTLLIKNMYNVKFQWVLTT--WTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 132 -~AD~ylLk~m~~~P~k~VLHd--W~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
..|++-.- +.+|- =+.+.+..+|+++...|.|||.+|.
T Consensus 144 ~~FDvVScQ--------FalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 144 RKFDVVSCQ--------FALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp S-EEEEEEE--------S-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCcceeehH--------HHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 22332221 25675 4577788899999999999999754
No 170
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=26.09 E-value=33 Score=28.92 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=28.3
Q ss_pred ceeeeeec------CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhh
Q 044941 122 RCSRVHFY------PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKA 168 (202)
Q Consensus 122 Rcs~vhff------P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~A 168 (202)
.|..+|.- -+..-||||.+ |+|+.+.+.+.+++|+.-
T Consensus 110 ktvYVHCKAGRtRSaTvV~cYLmq~----------~~wtpe~A~~~vr~iRp~ 152 (183)
T KOG1719|consen 110 KTVYVHCKAGRTRSATVVACYLMQH----------KNWTPEAAVEHVRKIRPR 152 (183)
T ss_pred CeEEEEecCCCccchhhhhhhhhhh----------cCCCHHHHHHHHHhcCcc
Confidence 57777753 12345788887 899999999999998864
No 171
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=25.49 E-value=1.4e+02 Score=25.50 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=27.5
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 149 VLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 149 VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
-+.+.+-...++||+....-++.||.++.+-.
T Consensus 126 Pll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 126 PLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred ccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 35788889999999999999999999877653
No 172
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=24.79 E-value=1.1e+02 Score=28.89 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEeeeccCCCCCchHHhhhhh
Q 044941 158 CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL 196 (202)
Q Consensus 158 ~~~IL~~~~~AL~~gGrLlI~E~vl~~~~~~~~~~~~~~ 196 (202)
-.+||++....|++||+|+---.-+++...+.....++.
T Consensus 275 Q~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~ 313 (375)
T KOG2198|consen 275 QLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQ 313 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHH
Confidence 458999999999999999877666766665555555553
No 173
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=24.67 E-value=2.8e+02 Score=25.89 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHCCCC--CccccccccchhhhccCCCCCC-ceeeee---ecCCCcceeeeehhcccccccccCCCCHHH
Q 044941 84 NAQQALETVAQQVPNF--GTEHDKAHCPLHLKTGACRFGQ-RCSRVH---FYPNKSCTLLIKNMYNVKFQWVLTTWTDDE 157 (202)
Q Consensus 84 g~G~ll~~ll~~~P~l--dl~~d~~~~~~~~k~gacr~~d-Rcs~vh---ffP~~AD~ylLk~m~~~P~k~VLHdW~Dee 157 (202)
+-|.++..++...|.. |.-.........+... ++.+ .++... -+|.++|+++++- .=+-..
T Consensus 54 ~fGal~~~l~~~~~~~~~ds~~~~~~~~~n~~~n--~~~~~~~~~~~~~~~~~~~~d~vl~~~-----------PK~~~~ 120 (378)
T PRK15001 54 AFGALSCALAEHKPYSIGDSYISELATRENLRLN--GIDESSVKFLDSTADYPQQPGVVLIKV-----------PKTLAL 120 (378)
T ss_pred chhHHHHHHHhCCCCeeehHHHHHHHHHHHHHHc--CCCcccceeecccccccCCCCEEEEEe-----------CCCHHH
Confidence 7788888888655542 1111111111222221 2221 234442 3577899998884 334578
Q ss_pred HHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 158 CKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 158 ~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
....|..+...+++|+.|++.+..-
T Consensus 121 l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 121 LEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred HHHHHHHHHhhCCCCCEEEEEEecC
Confidence 8899999999999999998777653
No 174
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=23.26 E-value=63 Score=27.95 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=20.2
Q ss_pred ceeecC-ChHHHHHHHHHHCCCC
Q 044941 78 AFADHQ-NAQQALETVAQQVPNF 99 (202)
Q Consensus 78 ~~~d~~-g~G~ll~~ll~~~P~l 99 (202)
-++++| |.|.++.++|+++|+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~ 73 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK 73 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC
Confidence 488998 9999999999999994
No 175
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=23.14 E-value=32 Score=30.00 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=19.9
Q ss_pred ccccchhhhccCCCCCCceeeee
Q 044941 105 KAHCPLHLKTGACRFGQRCSRVH 127 (202)
Q Consensus 105 ~~~~~~~~k~gacr~~dRcs~vh 127 (202)
...|..|-.+|.|+|||-|.|.|
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH 163 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLH 163 (259)
T ss_pred cccccchhhcccccCCchhhhhh
Confidence 35688888899999999999986
No 176
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=23.07 E-value=98 Score=28.12 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEeeecc
Q 044941 152 TWTDDECKLIMENCYKALPAGGKLIACEPVL 182 (202)
Q Consensus 152 dW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl 182 (202)
|=.-++..+.|..+...|.|||||+|+-+--
T Consensus 213 N~EL~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 213 NDELEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 3344567888999999999999999987643
No 177
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.75 E-value=40 Score=29.15 Aligned_cols=90 Identities=9% Similarity=0.000 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHCCCC------Cc-cccccccchhhhccCCC-CCCceeee--e---ec---CC-Ccceeeeehhcccc
Q 044941 83 QNAQQALETVAQQVPNF------GT-EHDKAHCPLHLKTGACR-FGQRCSRV--H---FY---PN-KSCTLLIKNMYNVK 145 (202)
Q Consensus 83 ~g~G~ll~~ll~~~P~l------dl-~~d~~~~~~~~k~gacr-~~dRcs~v--h---ff---P~-~AD~ylLk~m~~~P 145 (202)
+|.|.++.++++ ||.. ++ +.+.+.|..++...++. -..|++.+ | |. +. ..|++++-- +. |
T Consensus 85 gG~G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~-~d-p 161 (246)
T PF01564_consen 85 GGDGGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDL-TD-P 161 (246)
T ss_dssp STTSHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEES-SS-T
T ss_pred CCChhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeC-CC-C
Confidence 378888888875 5532 22 34556677766532222 35688877 3 22 55 688887753 11 1
Q ss_pred cccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 146 FQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 146 ~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
.....+ --....++.|++.|.++|.+++.-
T Consensus 162 ~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 162 DGPAPN----LFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp TSCGGG----GSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccc----ccCHHHHHHHHhhcCCCcEEEEEc
Confidence 100001 224678899999999999887654
No 178
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=22.64 E-value=1.1e+02 Score=27.51 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCCceeee--eec--C---CCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEE
Q 044941 118 RFGQRCSRV--HFY--P---NKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIA 177 (202)
Q Consensus 118 r~~dRcs~v--hff--P---~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI 177 (202)
+++.|+++. +.. + ...|++++.. |-..+.++-.+||+++.+-|++|++|++
T Consensus 171 ~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa---------lVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 171 GLSKRMSFITADVLDVTYDLKEYDVVFLAA---------LVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp HH-SSEEEEES-GGGG-GG----SEEEE-T---------T-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred cccCCeEEEecchhccccccccCCEEEEhh---------hcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 678899988 432 2 3468888885 4578889999999999999999998765
No 179
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=22.44 E-value=2.1e+02 Score=23.51 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.2
Q ss_pred CCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEE
Q 044941 131 NKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKL 175 (202)
Q Consensus 131 ~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrL 175 (202)
.|+|.+++. +--+.++++...-|+.+...|+++||.
T Consensus 78 nG~~~vVi~---------v~~~i~~~~leaTL~QaA~nL~s~GR~ 113 (145)
T PF10726_consen 78 NGADQVVIA---------VPPDITPEALEATLEQAASNLFSGGRS 113 (145)
T ss_pred CCCcEEEEE---------cCCCCCHHHHHHHHHHHHHhccccCcc
Confidence 678888777 567999999999999999999998774
No 180
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=21.54 E-value=1.1e+02 Score=27.59 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCEEEEeeeccCCC
Q 044941 151 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 185 (202)
Q Consensus 151 HdW~Dee~~~IL~~~~~AL~~gGrLlI~E~vl~~~ 185 (202)
-|=.-++..+.|..+...|.+||+|+|+-.---|+
T Consensus 208 VN~El~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 208 VNDELEELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHhhHHHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 34445677889999999999999999987654433
No 181
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=1.1e+02 Score=27.47 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCCCceeee--eecCCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEeee
Q 044941 118 RFGQRCSRV--HFYPNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 118 r~~dRcs~v--hffP~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
|-|+-+.++ ++=|.++.++-|+. .=+.|..+-.|.+..+.++.+|.|+|+|.
T Consensus 86 GKgG~Ikri~~~lNPR~~rvval~a-----------Pt~~E~~qwY~qRy~~~lPa~GeiviFdR 139 (270)
T COG2326 86 GKGGAIKRITEALNPRGARVVALPA-----------PTDRERGQWYFQRYVAHLPAAGEIVIFDR 139 (270)
T ss_pred CCCchhHHHhhhcCCceeEEeecCC-----------CChHhhccHHHHHHHHhCCCCCeEEEech
Confidence 455556555 34498889888886 55677788889999999999999998874
No 182
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=20.80 E-value=2.2e+02 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=31.2
Q ss_pred CCCcceeeeehhcccccccccCCCCHHHHHHHHHHHHhhCCCCCEEEEee
Q 044941 130 PNKSCTLLIKNMYNVKFQWVLTTWTDDECKLIMENCYKALPAGGKLIACE 179 (202)
Q Consensus 130 P~~AD~ylLk~m~~~P~k~VLHdW~Dee~~~IL~~~~~AL~~gGrLlI~E 179 (202)
|..+|++++.- .=+..++...|.++.+.++|||.|+++-
T Consensus 35 ~~~~d~~l~~~-----------pK~~~e~e~qLa~ll~~~~~g~~i~v~g 73 (300)
T COG2813 35 PDDFDAVLLYW-----------PKHKAEAEFQLAQLLARLPPGGEIVVVG 73 (300)
T ss_pred cCCCCEEEEEc-----------cCchHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 45577777764 4567889999999999999999998763
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=20.16 E-value=1.1e+02 Score=29.43 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=24.4
Q ss_pred cCCCCHHHH-------HHHHHHHHhhCCCCCEEEEeee
Q 044941 150 LTTWTDDEC-------KLIMENCYKALPAGGKLIACEP 180 (202)
Q Consensus 150 LHdW~Dee~-------~~IL~~~~~AL~~gGrLlI~E~ 180 (202)
.-.|+.++. .+||++++..|+|||+|+-.=.
T Consensus 206 ~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 206 LKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 346888876 6899999999999998854443
Done!