Query 044943
Match_columns 107
No_of_seqs 125 out of 1815
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.6E-28 3.5E-33 139.5 11.7 102 2-106 46-149 (150)
2 KOG0907 Thioredoxin [Posttrans 100.0 2.2E-27 4.8E-32 130.1 12.1 102 3-104 4-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 100.0 7.6E-27 1.6E-31 128.2 13.5 98 5-104 2-102 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 8.3E-27 1.8E-31 128.8 10.6 85 6-92 2-87 (114)
5 PHA02278 thioredoxin-like prot 99.9 1.2E-25 2.7E-30 123.0 12.3 93 4-100 2-100 (103)
6 PF00085 Thioredoxin: Thioredo 99.9 2.1E-25 4.5E-30 122.0 13.0 99 3-104 3-103 (103)
7 cd02948 TRX_NDPK TRX domain, T 99.9 3.8E-25 8.3E-30 121.2 12.8 97 2-103 3-101 (102)
8 cd02956 ybbN ybbN protein fami 99.9 6.2E-25 1.3E-29 119.1 11.8 93 8-102 2-96 (96)
9 PLN00410 U5 snRNP protein, DIM 99.9 1.3E-24 2.8E-29 124.2 13.4 102 2-105 7-120 (142)
10 cd02963 TRX_DnaJ TRX domain, D 99.9 6.5E-25 1.4E-29 122.0 11.2 97 6-103 11-110 (111)
11 cd02999 PDI_a_ERp44_like PDIa 99.9 1.3E-24 2.8E-29 118.7 10.5 83 18-101 16-100 (100)
12 cd02984 TRX_PICOT TRX domain, 99.9 3.4E-24 7.3E-29 116.3 11.7 95 5-101 1-96 (97)
13 COG3118 Thioredoxin domain-con 99.9 1.1E-24 2.5E-29 135.4 10.7 101 5-106 29-131 (304)
14 PRK10996 thioredoxin 2; Provis 99.9 8.5E-24 1.8E-28 121.6 13.4 93 13-105 45-139 (139)
15 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.8E-24 6.2E-29 119.3 10.8 93 7-100 17-112 (113)
16 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.6E-24 5.6E-29 117.7 10.4 92 5-100 7-100 (101)
17 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.7E-24 8E-29 117.6 10.6 94 5-101 7-104 (104)
18 cd02989 Phd_like_TxnDC9 Phosdu 99.9 5.5E-24 1.2E-28 118.5 11.1 87 2-92 8-94 (113)
19 KOG0908 Thioredoxin-like prote 99.9 2.3E-24 4.9E-29 130.9 10.0 104 1-106 4-107 (288)
20 PRK09381 trxA thioredoxin; Pro 99.9 2E-23 4.4E-28 115.5 13.1 97 6-105 10-108 (109)
21 cd02986 DLP Dim1 family, Dim1- 99.9 4.2E-24 9.1E-29 117.3 9.7 97 6-104 2-110 (114)
22 cd03065 PDI_b_Calsequestrin_N 99.9 2E-23 4.3E-28 116.8 12.0 97 5-105 15-119 (120)
23 PTZ00051 thioredoxin; Provisio 99.9 2.1E-23 4.5E-28 113.4 11.7 94 2-99 4-97 (98)
24 cd02950 TxlA TRX-like protein 99.9 1.4E-23 3E-28 121.0 11.4 95 12-106 12-111 (142)
25 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.9E-23 6.2E-28 114.8 10.9 93 5-101 7-108 (108)
26 cd02975 PfPDO_like_N Pyrococcu 99.9 5.5E-23 1.2E-27 114.5 12.0 99 8-106 10-111 (113)
27 cd02957 Phd_like Phosducin (Ph 99.9 1.7E-23 3.7E-28 116.6 10.0 87 3-92 9-95 (113)
28 cd02953 DsbDgamma DsbD gamma f 99.9 1.4E-23 3E-28 115.4 8.5 91 12-102 3-104 (104)
29 cd02965 HyaE HyaE family; HyaE 99.9 7.8E-23 1.7E-27 112.3 11.2 91 5-99 16-110 (111)
30 TIGR01068 thioredoxin thioredo 99.9 1.7E-22 3.7E-27 110.0 12.6 97 6-105 3-101 (101)
31 cd02987 Phd_like_Phd Phosducin 99.9 1.1E-22 2.4E-27 120.7 12.5 100 2-103 66-173 (175)
32 cd02949 TRX_NTR TRX domain, no 99.9 2.3E-22 4.9E-27 109.3 11.6 85 18-102 11-97 (97)
33 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.4E-22 3.1E-27 110.7 10.8 92 5-101 6-102 (102)
34 cd02951 SoxW SoxW family; SoxW 99.9 1.7E-22 3.6E-27 114.3 11.1 98 9-106 2-120 (125)
35 TIGR01126 pdi_dom protein disu 99.9 2E-22 4.3E-27 110.1 10.9 96 6-105 3-102 (102)
36 cd03000 PDI_a_TMX3 PDIa family 99.9 1.5E-22 3.3E-27 111.2 10.3 95 8-104 4-103 (104)
37 cd02962 TMX2 TMX2 family; comp 99.9 3.8E-22 8.2E-27 115.8 12.4 85 5-91 34-126 (152)
38 PTZ00443 Thioredoxin domain-co 99.9 3.3E-22 7.2E-27 122.3 12.6 101 5-105 36-139 (224)
39 cd03002 PDI_a_MPD1_like PDI fa 99.9 2.8E-22 6.2E-27 110.8 10.7 94 5-101 6-108 (109)
40 cd02997 PDI_a_PDIR PDIa family 99.9 3.9E-22 8.4E-27 109.3 11.0 92 6-101 7-104 (104)
41 PTZ00062 glutaredoxin; Provisi 99.9 5.1E-22 1.1E-26 119.9 12.0 95 1-106 1-95 (204)
42 cd02994 PDI_a_TMX PDIa family, 99.9 7E-22 1.5E-26 108.0 11.3 92 5-103 7-101 (101)
43 cd02947 TRX_family TRX family; 99.9 2.9E-21 6.2E-26 103.2 10.8 87 15-101 5-92 (93)
44 TIGR01295 PedC_BrcD bacterioci 99.9 5.4E-21 1.2E-25 107.6 11.9 89 13-102 16-121 (122)
45 cd03001 PDI_a_P5 PDIa family, 99.9 5.8E-21 1.3E-25 104.5 11.2 94 5-101 6-102 (103)
46 cd02961 PDI_a_family Protein D 99.9 3.9E-21 8.5E-26 104.3 9.8 89 13-101 8-101 (101)
47 cd02998 PDI_a_ERp38 PDIa famil 99.9 7.2E-21 1.6E-25 104.3 9.2 93 6-101 7-105 (105)
48 cd02988 Phd_like_VIAF Phosduci 99.9 2.2E-20 4.7E-25 112.3 12.0 95 5-103 88-190 (192)
49 cd02993 PDI_a_APS_reductase PD 99.9 1.7E-20 3.7E-25 103.9 10.4 96 5-101 7-109 (109)
50 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 1.2E-20 2.5E-25 103.4 9.5 93 5-101 6-104 (104)
51 cd02959 ERp19 Endoplasmic reti 99.8 5.4E-21 1.2E-25 107.0 6.3 104 2-106 2-114 (117)
52 PRK00293 dipZ thiol:disulfide 99.8 5.8E-20 1.3E-24 125.4 11.5 104 2-105 456-570 (571)
53 PTZ00102 disulphide isomerase; 99.8 1.4E-19 3E-24 121.5 12.6 93 13-106 42-139 (477)
54 cd02952 TRP14_like Human TRX-r 99.8 1.9E-19 4E-24 100.5 10.8 97 2-100 5-117 (119)
55 TIGR01130 ER_PDI_fam protein d 99.8 2.3E-19 5E-24 119.7 12.0 98 5-106 7-110 (462)
56 KOG0190 Protein disulfide isom 99.8 1.5E-19 3.3E-24 119.9 8.5 92 15-106 37-133 (493)
57 cd02955 SSP411 TRX domain, SSP 99.8 1.1E-18 2.4E-23 98.3 10.5 95 10-104 5-118 (124)
58 cd02992 PDI_a_QSOX PDIa family 99.8 2.3E-19 5.1E-24 100.0 7.7 77 5-84 7-89 (114)
59 TIGR00411 redox_disulf_1 small 99.8 3.2E-18 6.8E-23 90.1 10.1 79 23-105 2-82 (82)
60 PTZ00102 disulphide isomerase; 99.8 1.4E-18 2.9E-23 116.7 10.7 98 6-106 364-466 (477)
61 TIGR02187 GlrX_arch Glutaredox 99.8 4.5E-18 9.7E-23 104.2 11.9 97 8-105 8-111 (215)
62 PF13098 Thioredoxin_2: Thiore 99.8 8.1E-19 1.8E-23 97.4 6.8 85 17-101 2-112 (112)
63 TIGR02738 TrbB type-F conjugat 99.8 3.3E-18 7.1E-23 99.5 9.5 91 14-105 44-153 (153)
64 TIGR00424 APS_reduc 5'-adenyly 99.8 8.4E-18 1.8E-22 111.8 11.8 99 5-104 357-462 (463)
65 PLN02309 5'-adenylylsulfate re 99.8 1E-17 2.2E-22 111.4 12.1 99 5-104 351-456 (457)
66 PRK14018 trifunctional thiored 99.8 1.3E-17 2.7E-22 112.3 11.5 86 18-103 54-171 (521)
67 TIGR02187 GlrX_arch Glutaredox 99.8 1.8E-17 3.8E-22 101.5 11.3 81 20-103 132-214 (215)
68 cd02958 UAS UAS family; UAS is 99.8 3.6E-17 7.9E-22 91.2 11.1 99 7-105 4-111 (114)
69 PRK15412 thiol:disulfide inter 99.8 3.2E-17 6.8E-22 98.4 11.5 86 18-105 66-176 (185)
70 TIGR00385 dsbE periplasmic pro 99.8 3.4E-17 7.4E-22 97.3 11.4 88 18-107 61-173 (173)
71 cd02982 PDI_b'_family Protein 99.8 1.1E-17 2.4E-22 91.5 8.4 85 20-104 12-102 (103)
72 TIGR02740 TraF-like TraF-like 99.8 1E-16 2.2E-21 101.0 13.3 86 19-105 165-264 (271)
73 cd03007 PDI_a_ERp29_N PDIa fam 99.7 2.1E-17 4.5E-22 91.7 8.9 93 5-104 7-115 (116)
74 cd02960 AGR Anterior Gradient 99.7 2.4E-17 5.2E-22 93.0 8.4 90 2-92 5-99 (130)
75 PHA02125 thioredoxin-like prot 99.7 7.6E-17 1.6E-21 83.7 9.2 70 24-101 2-73 (75)
76 cd03010 TlpA_like_DsbE TlpA-li 99.7 4.7E-17 1E-21 92.2 8.9 79 18-97 23-126 (127)
77 cd03026 AhpF_NTD_C TRX-GRX-lik 99.7 4.8E-16 1E-20 83.0 10.4 82 10-97 4-86 (89)
78 KOG4277 Uncharacterized conser 99.7 7.8E-17 1.7E-21 101.2 7.6 98 7-105 31-132 (468)
79 cd03008 TryX_like_RdCVF Trypar 99.7 2.7E-16 5.9E-21 90.7 8.9 70 19-88 24-128 (146)
80 PRK03147 thiol-disulfide oxido 99.7 1E-15 2.2E-20 90.7 11.2 86 19-104 60-171 (173)
81 cd02973 TRX_GRX_like Thioredox 99.7 5E-16 1.1E-20 78.9 8.2 62 24-87 3-64 (67)
82 TIGR01130 ER_PDI_fam protein d 99.7 5.5E-16 1.2E-20 103.6 10.0 95 7-106 354-455 (462)
83 TIGR00412 redox_disulf_2 small 99.7 1.5E-15 3.3E-20 78.9 9.2 70 25-101 3-75 (76)
84 PF13905 Thioredoxin_8: Thiore 99.7 8.8E-16 1.9E-20 82.9 8.5 66 20-85 1-95 (95)
85 PRK11509 hydrogenase-1 operon 99.7 5.7E-15 1.2E-19 83.5 11.9 90 17-106 31-125 (132)
86 PLN02919 haloacid dehalogenase 99.7 1.4E-15 3.1E-20 109.8 11.6 87 19-105 419-536 (1057)
87 PRK13728 conjugal transfer pro 99.7 2.4E-15 5.3E-20 89.2 10.6 82 24-106 73-172 (181)
88 cd03009 TryX_like_TryX_NRX Try 99.7 1.2E-15 2.5E-20 86.9 8.4 71 19-89 17-116 (131)
89 PF13899 Thioredoxin_7: Thiore 99.7 7.7E-16 1.7E-20 81.2 7.1 76 5-81 2-81 (82)
90 KOG0912 Thiol-disulfide isomer 99.7 5.5E-16 1.2E-20 97.2 7.4 92 15-106 8-107 (375)
91 cd02964 TryX_like_family Trypa 99.6 2.1E-15 4.5E-20 86.0 8.3 72 18-89 15-116 (132)
92 cd02966 TlpA_like_family TlpA- 99.6 4.3E-15 9.3E-20 81.9 9.2 73 19-91 18-116 (116)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 3.8E-15 8.2E-20 83.8 9.0 82 18-100 18-121 (123)
94 smart00594 UAS UAS domain. 99.6 1.7E-14 3.7E-19 81.3 10.5 96 6-101 13-121 (122)
95 KOG0191 Thioredoxin/protein di 99.6 1.1E-14 2.4E-19 95.9 9.8 91 16-106 43-135 (383)
96 cd03012 TlpA_like_DipZ_like Tl 99.6 2.9E-14 6.4E-19 80.7 9.4 74 19-92 22-125 (126)
97 KOG0190 Protein disulfide isom 99.6 4.1E-15 8.8E-20 99.1 6.4 94 7-105 374-473 (493)
98 COG4232 Thiol:disulfide interc 99.6 1.6E-14 3.6E-19 97.3 9.3 100 4-105 460-568 (569)
99 PTZ00056 glutathione peroxidas 99.6 4.5E-14 9.8E-19 85.6 9.3 88 19-106 38-179 (199)
100 PF08534 Redoxin: Redoxin; In 99.6 6.9E-14 1.5E-18 80.9 9.4 74 19-92 27-134 (146)
101 PLN02399 phospholipid hydroper 99.6 1.2E-13 2.5E-18 85.5 10.7 88 19-106 98-235 (236)
102 TIGR02661 MauD methylamine deh 99.6 1.5E-13 3.2E-18 82.8 10.5 86 18-104 72-178 (189)
103 TIGR01626 ytfJ_HI0045 conserve 99.5 1.1E-13 2.4E-18 82.6 9.6 82 18-101 57-176 (184)
104 PF03190 Thioredox_DsbH: Prote 99.5 1.2E-13 2.6E-18 80.6 9.4 102 3-104 20-140 (163)
105 cd02967 mauD Methylamine utili 99.5 1.3E-13 2.9E-18 76.6 8.7 70 19-88 20-111 (114)
106 COG2143 Thioredoxin-related pr 99.5 4.6E-13 9.9E-18 76.8 10.5 94 9-102 31-146 (182)
107 PLN02412 probable glutathione 99.5 4.2E-13 9.2E-18 79.4 10.4 88 19-106 28-165 (167)
108 PF02114 Phosducin: Phosducin; 99.5 1.8E-13 3.9E-18 85.9 8.7 99 3-103 130-236 (265)
109 TIGR02540 gpx7 putative glutat 99.5 1.3E-12 2.8E-17 76.3 10.0 87 19-105 21-153 (153)
110 cd02969 PRX_like1 Peroxiredoxi 99.5 2.5E-12 5.4E-17 76.3 11.1 88 19-106 24-153 (171)
111 PF14595 Thioredoxin_9: Thiore 99.5 8.6E-13 1.9E-17 74.9 8.4 84 19-103 40-127 (129)
112 cd00340 GSH_Peroxidase Glutath 99.4 1.4E-12 2.9E-17 76.1 8.5 81 19-100 21-151 (152)
113 PF13728 TraF: F plasmid trans 99.4 9.5E-12 2.1E-16 76.2 11.7 89 10-101 112-214 (215)
114 KOG0191 Thioredoxin/protein di 99.4 1.8E-12 3.9E-17 85.5 8.4 88 18-105 160-252 (383)
115 cd02991 UAS_ETEA UAS family, E 99.4 2.3E-11 5.1E-16 67.9 11.6 98 7-106 4-114 (116)
116 KOG1731 FAD-dependent sulfhydr 99.4 1.7E-13 3.6E-18 92.1 2.8 98 5-105 45-153 (606)
117 TIGR02196 GlrX_YruB Glutaredox 99.4 7.6E-12 1.7E-16 64.1 7.8 68 24-101 2-73 (74)
118 cd03017 PRX_BCP Peroxiredoxin 99.4 1.2E-11 2.6E-16 70.9 8.7 83 19-101 22-139 (140)
119 PF06110 DUF953: Eukaryotic pr 99.4 1.5E-11 3.3E-16 68.6 8.7 97 3-102 2-118 (119)
120 COG0526 TrxA Thiol-disulfide i 99.3 1.3E-11 2.9E-16 67.8 8.2 84 20-103 32-122 (127)
121 TIGR02739 TraF type-F conjugat 99.3 7E-11 1.5E-15 73.8 11.9 94 9-105 141-248 (256)
122 KOG1672 ATP binding protein [P 99.3 1.8E-11 3.9E-16 72.6 7.8 75 18-92 82-156 (211)
123 PF13192 Thioredoxin_3: Thiore 99.3 7.3E-11 1.6E-15 61.3 9.3 71 26-102 4-76 (76)
124 cd03014 PRX_Atyp2cys Peroxired 99.3 7.1E-11 1.5E-15 68.0 9.2 83 19-101 25-141 (143)
125 PTZ00256 glutathione peroxidas 99.3 5.8E-11 1.3E-15 71.2 9.0 88 19-106 39-182 (183)
126 PRK13703 conjugal pilus assemb 99.3 2.2E-10 4.8E-15 71.3 11.6 94 9-105 134-241 (248)
127 KOG0914 Thioredoxin-like prote 99.3 9.1E-12 2E-16 75.2 5.1 83 6-90 132-222 (265)
128 PRK00522 tpx lipid hydroperoxi 99.3 1.4E-10 3E-15 68.6 9.8 73 19-91 43-149 (167)
129 PF11009 DUF2847: Protein of u 99.3 4.3E-10 9.4E-15 61.2 10.8 94 2-97 3-104 (105)
130 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 7.6E-11 1.6E-15 66.2 7.6 69 19-87 24-123 (124)
131 TIGR02200 GlrX_actino Glutared 99.2 1.8E-10 3.8E-15 59.6 8.0 70 24-102 2-76 (77)
132 cd01659 TRX_superfamily Thiore 99.2 1.1E-10 2.4E-15 57.5 7.0 60 24-83 1-63 (69)
133 PRK11200 grxA glutaredoxin 1; 99.2 2.9E-10 6.4E-15 60.2 8.8 76 24-106 3-84 (85)
134 KOG3414 Component of the U4/U6 99.2 2.3E-10 5.1E-15 63.5 8.2 100 3-104 8-119 (142)
135 KOG2501 Thioredoxin, nucleored 99.2 9.6E-11 2.1E-15 67.8 6.9 70 19-88 32-131 (157)
136 cd02970 PRX_like2 Peroxiredoxi 99.2 2.1E-10 4.5E-15 66.3 8.4 41 20-60 24-66 (149)
137 PRK10877 protein disulfide iso 99.2 1.4E-10 3.1E-15 71.9 8.1 80 19-104 106-230 (232)
138 PRK09437 bcp thioredoxin-depen 99.2 7.2E-10 1.6E-14 64.7 9.7 85 19-103 29-151 (154)
139 cd03015 PRX_Typ2cys Peroxiredo 99.2 7.9E-10 1.7E-14 65.7 10.0 86 19-104 28-156 (173)
140 KOG3425 Uncharacterized conser 99.2 7.9E-10 1.7E-14 60.9 8.6 79 3-82 9-104 (128)
141 PRK10606 btuE putative glutath 99.2 4.7E-10 1E-14 67.2 8.4 41 19-60 24-66 (183)
142 KOG0911 Glutaredoxin-related p 99.1 4.4E-11 9.6E-16 72.4 3.2 87 18-104 15-101 (227)
143 TIGR03137 AhpC peroxiredoxin. 99.1 2E-09 4.3E-14 64.8 10.2 84 19-102 30-153 (187)
144 TIGR02183 GRXA Glutaredoxin, G 99.1 1.5E-09 3.4E-14 57.5 8.2 75 24-105 2-82 (86)
145 TIGR02180 GRX_euk Glutaredoxin 99.1 6.9E-10 1.5E-14 58.3 6.4 60 24-86 1-65 (84)
146 PF02966 DIM1: Mitosis protein 99.1 1E-08 2.2E-13 57.6 11.2 98 3-103 5-115 (133)
147 cd03018 PRX_AhpE_like Peroxire 99.1 3.6E-09 7.9E-14 61.2 9.4 72 21-92 29-133 (149)
148 TIGR03143 AhpF_homolog putativ 99.1 4.1E-09 8.8E-14 72.7 11.1 78 20-101 475-554 (555)
149 PRK11657 dsbG disulfide isomer 99.1 2.9E-09 6.3E-14 66.8 9.2 83 19-102 116-249 (251)
150 cd02971 PRX_family Peroxiredox 99.0 5.4E-09 1.2E-13 59.8 8.6 74 19-92 21-129 (140)
151 PRK15317 alkyl hydroperoxide r 99.0 8.7E-09 1.9E-13 70.6 10.8 80 20-103 116-196 (517)
152 cd02968 SCO SCO (an acronym fo 99.0 3.5E-09 7.6E-14 60.8 7.7 42 19-60 21-68 (142)
153 PRK13190 putative peroxiredoxi 99.0 1E-08 2.3E-13 62.4 9.9 87 19-105 26-154 (202)
154 cd02976 NrdH NrdH-redoxin (Nrd 99.0 8.4E-09 1.8E-13 52.5 8.0 67 24-100 2-72 (73)
155 PRK10382 alkyl hydroperoxide r 99.0 3E-08 6.6E-13 59.7 10.9 86 19-104 30-155 (187)
156 cd03020 DsbA_DsbC_DsbG DsbA fa 99.0 6.1E-09 1.3E-13 63.1 7.7 76 19-101 76-197 (197)
157 PHA03050 glutaredoxin; Provisi 98.9 1.6E-08 3.5E-13 55.8 8.1 73 11-87 4-81 (108)
158 PRK15000 peroxidase; Provision 98.9 3.6E-08 7.9E-13 60.0 10.2 86 19-104 33-161 (200)
159 TIGR03140 AhpF alkyl hydropero 98.9 3.3E-08 7.1E-13 67.7 11.0 81 20-104 117-198 (515)
160 PF00462 Glutaredoxin: Glutare 98.9 4.1E-08 8.9E-13 48.5 7.9 55 24-85 1-59 (60)
161 cd03023 DsbA_Com1_like DsbA fa 98.9 3.3E-08 7.2E-13 57.2 8.7 39 19-57 4-42 (154)
162 PRK10329 glutaredoxin-like pro 98.9 9.1E-08 2E-12 50.2 9.3 72 24-105 3-77 (81)
163 COG1331 Highly conserved prote 98.9 2.3E-08 5.1E-13 69.2 8.8 82 10-91 33-127 (667)
164 TIGR02194 GlrX_NrdH Glutaredox 98.8 4.5E-08 9.7E-13 50.2 7.0 67 25-100 2-71 (72)
165 PRK13189 peroxiredoxin; Provis 98.8 1.5E-07 3.3E-12 58.2 10.1 86 19-104 34-162 (222)
166 TIGR02189 GlrX-like_plant Glut 98.8 3.6E-08 7.9E-13 53.6 6.5 57 24-87 10-73 (99)
167 PRK13599 putative peroxiredoxi 98.8 2.5E-07 5.5E-12 56.9 10.4 86 19-104 27-155 (215)
168 cd03016 PRX_1cys Peroxiredoxin 98.8 2.5E-07 5.3E-12 56.5 10.2 84 21-104 26-153 (203)
169 PTZ00137 2-Cys peroxiredoxin; 98.8 3.3E-07 7.1E-12 57.8 10.7 86 19-104 97-224 (261)
170 PF07449 HyaE: Hydrogenase-1 e 98.7 4.2E-07 9.2E-12 49.9 9.5 79 18-96 24-106 (107)
171 PRK13191 putative peroxiredoxi 98.7 3E-07 6.5E-12 56.6 9.9 86 19-104 32-160 (215)
172 cd03419 GRX_GRXh_1_2_like Glut 98.7 1.4E-07 3.1E-12 49.2 6.7 58 24-86 2-64 (82)
173 KOG0913 Thiol-disulfide isomer 98.7 7.5E-09 1.6E-13 63.3 1.8 80 23-103 42-124 (248)
174 TIGR02190 GlrX-dom Glutaredoxi 98.7 1.5E-07 3.2E-12 49.1 6.4 59 21-86 7-68 (79)
175 PTZ00253 tryparedoxin peroxida 98.7 3.4E-07 7.4E-12 55.7 8.7 85 19-103 35-162 (199)
176 PF05768 DUF836: Glutaredoxin- 98.6 9.5E-07 2.1E-11 46.3 8.7 77 24-102 2-81 (81)
177 cd03029 GRX_hybridPRX5 Glutare 98.6 8.9E-07 1.9E-11 45.2 8.2 66 24-101 3-71 (72)
178 PF13462 Thioredoxin_4: Thiore 98.6 1.3E-06 2.8E-11 51.1 9.3 80 19-103 11-162 (162)
179 cd02066 GRX_family Glutaredoxi 98.6 6.4E-07 1.4E-11 45.2 6.9 57 24-87 2-62 (72)
180 cd03019 DsbA_DsbA DsbA family, 98.6 4.9E-07 1.1E-11 53.6 7.4 32 19-50 14-45 (178)
181 KOG3171 Conserved phosducin-li 98.6 1.1E-07 2.4E-12 57.7 4.5 88 2-91 142-229 (273)
182 cd03418 GRX_GRXb_1_3_like Glut 98.6 9.2E-07 2E-11 45.4 7.5 57 24-87 2-63 (75)
183 TIGR00365 monothiol glutaredox 98.6 1.7E-06 3.7E-11 46.9 8.7 68 12-87 4-79 (97)
184 PF13848 Thioredoxin_6: Thiore 98.6 6.6E-06 1.4E-10 49.0 11.8 90 14-103 88-184 (184)
185 TIGR02181 GRX_bact Glutaredoxi 98.6 5.5E-07 1.2E-11 46.8 6.3 56 24-86 1-60 (79)
186 cd03027 GRX_DEP Glutaredoxin ( 98.5 1.2E-06 2.7E-11 44.8 7.3 57 24-87 3-63 (73)
187 TIGR03143 AhpF_homolog putativ 98.5 2.6E-06 5.5E-11 59.1 11.0 96 8-105 356-454 (555)
188 COG0695 GrxC Glutaredoxin and 98.5 2.1E-06 4.5E-11 44.9 7.9 66 24-99 3-75 (80)
189 KOG3170 Conserved phosducin-li 98.5 5.1E-07 1.1E-11 54.3 6.0 94 5-102 97-198 (240)
190 PRK10824 glutaredoxin-4; Provi 98.5 2E-06 4.2E-11 48.0 7.7 72 9-87 4-82 (115)
191 PRK10954 periplasmic protein d 98.4 3.8E-06 8.3E-11 51.4 8.1 38 19-56 36-77 (207)
192 PRK10638 glutaredoxin 3; Provi 98.4 4.3E-06 9.4E-11 43.9 7.1 57 24-87 4-64 (83)
193 PTZ00062 glutaredoxin; Provisi 98.4 8.5E-06 1.8E-10 49.8 9.2 75 6-87 99-180 (204)
194 PF01216 Calsequestrin: Calseq 98.4 3.1E-05 6.7E-10 50.4 11.7 95 6-106 41-145 (383)
195 KOG1752 Glutaredoxin and relat 98.3 1.2E-05 2.7E-10 44.0 8.2 68 13-87 7-79 (104)
196 cd03028 GRX_PICOT_like Glutare 98.3 1.2E-05 2.6E-10 42.9 7.4 50 30-86 21-74 (90)
197 cd02972 DsbA_family DsbA famil 98.1 3.1E-05 6.7E-10 41.0 6.3 57 24-80 1-90 (98)
198 cd02983 P5_C P5 family, C-term 98.0 0.00031 6.7E-09 40.1 10.3 101 2-106 6-116 (130)
199 PRK12759 bifunctional gluaredo 98.0 3E-05 6.6E-10 52.1 7.1 57 24-87 4-72 (410)
200 KOG2603 Oligosaccharyltransfer 98.0 6.5E-05 1.4E-09 48.2 7.4 85 20-104 60-165 (331)
201 cd02981 PDI_b_family Protein D 97.9 0.00042 9.2E-09 37.1 9.2 90 3-103 4-96 (97)
202 COG1225 Bcp Peroxiredoxin [Pos 97.9 0.00073 1.6E-08 39.7 10.1 87 18-104 28-155 (157)
203 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00098 2.1E-08 37.0 8.5 87 18-106 14-109 (111)
204 PF01323 DSBA: DSBA-like thior 97.7 0.00076 1.6E-08 40.5 8.3 33 23-55 1-33 (193)
205 PF00837 T4_deiodinase: Iodoth 97.6 0.00045 9.8E-09 43.0 7.0 93 12-104 94-236 (237)
206 cd02974 AhpF_NTD_N Alkyl hydro 97.6 0.0023 4.9E-08 34.5 10.0 84 7-104 8-93 (94)
207 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.0016 3.4E-08 36.2 7.8 72 33-104 31-110 (111)
208 PF07912 ERp29_N: ERp29, N-ter 97.5 0.004 8.8E-08 35.0 10.7 89 15-105 16-119 (126)
209 PF13743 Thioredoxin_5: Thiore 97.5 0.0005 1.1E-08 41.2 6.0 26 26-51 2-27 (176)
210 COG1651 DsbG Protein-disulfide 97.5 0.0012 2.5E-08 41.3 7.5 37 64-105 206-243 (244)
211 cd02990 UAS_FAF1 UAS family, F 97.5 0.006 1.3E-07 35.1 11.4 97 7-105 4-133 (136)
212 cd03031 GRX_GRX_like Glutaredo 97.4 0.0019 4.2E-08 37.6 7.4 57 24-87 2-72 (147)
213 KOG2244 Highly conserved prote 97.2 0.0009 1.9E-08 46.4 4.8 74 5-80 97-184 (786)
214 KOG2507 Ubiquitin regulatory p 97.2 0.0091 2E-07 40.3 9.2 97 7-104 6-110 (506)
215 PRK15317 alkyl hydroperoxide r 97.2 0.015 3.2E-07 40.5 10.6 85 7-105 8-94 (517)
216 TIGR03140 AhpF alkyl hydropero 96.9 0.032 6.9E-07 38.9 10.6 86 7-105 8-95 (515)
217 cd03013 PRX5_like Peroxiredoxi 96.9 0.0043 9.2E-08 36.4 5.6 42 19-60 29-74 (155)
218 COG0386 BtuE Glutathione perox 96.8 0.039 8.5E-07 32.4 8.5 89 18-107 23-162 (162)
219 cd02978 KaiB_like KaiB-like fa 96.7 0.013 2.9E-07 29.9 5.6 58 23-80 3-62 (72)
220 COG2761 FrnE Predicted dithiol 96.7 0.053 1.2E-06 33.8 9.1 37 66-106 177-214 (225)
221 PF13848 Thioredoxin_6: Thiore 96.7 0.029 6.2E-07 33.3 7.9 64 38-105 8-75 (184)
222 cd02977 ArsC_family Arsenate R 96.7 0.0031 6.7E-08 34.5 3.4 74 25-103 2-85 (105)
223 cd03067 PDI_b_PDIR_N PDIb fami 96.6 0.039 8.6E-07 30.1 7.9 96 3-103 6-110 (112)
224 cd03040 GST_N_mPGES2 GST_N fam 96.6 0.027 5.8E-07 28.7 6.6 74 24-106 2-77 (77)
225 KOG2640 Thioredoxin [Function 96.6 0.0009 2E-08 43.1 1.0 85 20-105 76-162 (319)
226 COG3019 Predicted metal-bindin 96.5 0.061 1.3E-06 31.0 8.5 73 21-103 25-102 (149)
227 COG1999 Uncharacterized protei 96.4 0.1 2.2E-06 32.2 10.5 89 18-106 65-205 (207)
228 PF06053 DUF929: Domain of unk 96.3 0.032 6.9E-07 35.3 6.5 58 17-80 55-112 (249)
229 cd03060 GST_N_Omega_like GST_N 96.3 0.032 7E-07 28.0 5.5 57 25-85 2-59 (71)
230 COG3634 AhpF Alkyl hydroperoxi 96.2 0.056 1.2E-06 36.2 7.3 80 19-102 115-195 (520)
231 TIGR02654 circ_KaiB circadian 96.1 0.036 7.9E-07 29.4 5.3 71 21-92 3-75 (87)
232 PRK09301 circadian clock prote 96.1 0.034 7.4E-07 30.4 5.3 73 19-92 4-78 (103)
233 cd03036 ArsC_like Arsenate Red 96.1 0.012 2.6E-07 32.6 3.7 51 25-80 2-56 (111)
234 PRK01655 spxA transcriptional 96.1 0.018 3.9E-07 32.9 4.4 32 24-60 2-33 (131)
235 cd03066 PDI_b_Calsequestrin_mi 96.0 0.099 2.2E-06 28.3 9.7 84 14-104 12-100 (102)
236 TIGR01617 arsC_related transcr 96.0 0.019 4.2E-07 32.0 4.2 34 25-63 2-35 (117)
237 COG4545 Glutaredoxin-related p 96.0 0.012 2.6E-07 30.2 3.0 59 25-87 5-77 (85)
238 cd03041 GST_N_2GST_N GST_N fam 95.8 0.097 2.1E-06 26.7 6.5 69 25-103 3-75 (77)
239 PHA03075 glutaredoxin-like pro 95.8 0.022 4.9E-07 31.7 3.6 30 21-50 2-31 (123)
240 KOG1651 Glutathione peroxidase 95.7 0.14 3.1E-06 30.4 7.1 89 18-106 32-170 (171)
241 TIGR02742 TrbC_Ftype type-F co 95.7 0.19 4.1E-06 28.8 8.8 91 5-102 10-112 (130)
242 cd03035 ArsC_Yffb Arsenate Red 95.5 0.027 5.9E-07 30.9 3.5 32 25-61 2-33 (105)
243 PF06764 DUF1223: Protein of u 95.5 0.31 6.8E-06 30.0 10.2 77 24-105 2-98 (202)
244 cd00570 GST_N_family Glutathio 95.4 0.041 9E-07 26.7 3.8 51 26-79 3-55 (71)
245 cd03069 PDI_b_ERp57 PDIb famil 95.3 0.21 4.5E-06 27.2 9.1 90 3-104 5-103 (104)
246 cd03032 ArsC_Spx Arsenate Redu 95.3 0.069 1.5E-06 29.7 4.7 32 24-60 2-33 (115)
247 cd03051 GST_N_GTT2_like GST_N 95.3 0.082 1.8E-06 26.4 4.6 51 26-79 3-57 (74)
248 cd03037 GST_N_GRX2 GST_N famil 95.2 0.057 1.2E-06 27.0 3.9 55 26-84 3-57 (71)
249 PRK12559 transcriptional regul 95.1 0.061 1.3E-06 30.8 4.2 31 24-59 2-32 (131)
250 PF09673 TrbC_Ftype: Type-F co 95.0 0.3 6.4E-06 27.2 9.2 69 5-82 9-80 (113)
251 cd03059 GST_N_SspA GST_N famil 95.0 0.17 3.8E-06 25.2 5.3 51 25-78 2-53 (73)
252 COG5429 Uncharacterized secret 94.8 0.26 5.7E-06 31.0 6.5 81 21-104 42-140 (261)
253 PRK13344 spxA transcriptional 94.6 0.096 2.1E-06 30.0 4.1 31 24-59 2-32 (132)
254 COG0278 Glutaredoxin-related p 94.5 0.4 8.7E-06 26.2 7.3 79 8-87 3-83 (105)
255 PF02630 SCO1-SenC: SCO1/SenC; 94.2 0.23 5E-06 29.7 5.3 42 19-60 51-97 (174)
256 COG3531 Predicted protein-disu 94.1 0.16 3.4E-06 31.1 4.5 42 64-105 165-209 (212)
257 PF07689 KaiB: KaiB domain; I 94.1 0.029 6.2E-07 29.5 1.2 52 27-78 3-56 (82)
258 cd03045 GST_N_Delta_Epsilon GS 93.9 0.27 5.9E-06 24.6 4.6 52 25-79 2-57 (74)
259 cd03055 GST_N_Omega GST_N fami 93.8 0.36 7.8E-06 25.4 5.1 53 24-79 19-72 (89)
260 KOG2792 Putative cytochrome C 93.6 0.79 1.7E-05 29.4 6.9 87 19-105 138-275 (280)
261 PF06953 ArsD: Arsenical resis 93.4 0.8 1.7E-05 26.0 7.4 50 51-102 40-99 (123)
262 PF00255 GSHPx: Glutathione pe 93.4 0.48 1E-05 26.2 5.3 43 18-61 19-63 (108)
263 cd03025 DsbA_FrnE_like DsbA fa 93.1 0.19 4.2E-06 30.1 3.8 27 24-50 3-29 (193)
264 cd03024 DsbA_FrnE DsbA family, 92.8 0.19 4E-06 30.4 3.4 34 64-101 166-200 (201)
265 PF13417 GST_N_3: Glutathione 92.7 0.71 1.5E-05 23.3 8.1 69 27-105 2-71 (75)
266 PF13778 DUF4174: Domain of un 92.5 1.1 2.4E-05 25.1 9.1 74 30-103 20-110 (118)
267 PF04134 DUF393: Protein of un 91.6 0.36 7.8E-06 26.5 3.4 57 27-84 2-61 (114)
268 cd03033 ArsC_15kD Arsenate Red 91.2 0.51 1.1E-05 26.3 3.7 21 24-44 2-22 (113)
269 PF11287 DUF3088: Protein of u 91.0 0.45 9.7E-06 26.5 3.2 50 31-80 23-75 (112)
270 PF04592 SelP_N: Selenoprotein 90.9 0.61 1.3E-05 29.4 4.1 42 18-59 24-70 (238)
271 COG3011 Predicted thiol-disulf 90.7 2 4.3E-05 24.9 5.7 69 18-87 4-74 (137)
272 KOG1364 Predicted ubiquitin re 89.0 0.83 1.8E-05 30.4 3.8 54 52-105 133-189 (356)
273 PF09695 YtfJ_HI0045: Bacteria 88.7 3.5 7.6E-05 24.5 8.1 85 19-103 36-156 (160)
274 cd03052 GST_N_GDAP1 GST_N fami 88.6 2 4.4E-05 21.6 5.9 56 25-85 2-61 (73)
275 TIGR00014 arsC arsenate reduct 88.4 1 2.2E-05 25.0 3.5 30 25-59 2-31 (114)
276 cd03034 ArsC_ArsC Arsenate Red 88.3 1 2.3E-05 24.9 3.5 30 25-59 2-31 (112)
277 cd03022 DsbA_HCCA_Iso DsbA fam 87.9 0.92 2E-05 27.1 3.4 33 64-101 158-191 (192)
278 cd03068 PDI_b_ERp72 PDIb famil 87.3 3.4 7.3E-05 22.6 10.2 90 3-103 5-106 (107)
279 COG0821 gcpE 1-hydroxy-2-methy 86.4 3.4 7.4E-05 27.6 5.4 75 31-105 263-351 (361)
280 cd03056 GST_N_4 GST_N family, 86.3 2.7 5.9E-05 20.6 5.1 55 26-85 3-61 (73)
281 PRK13730 conjugal transfer pil 84.9 7.3 0.00016 24.3 9.2 40 62-102 151-191 (212)
282 PF06491 Disulph_isomer: Disul 83.7 6.3 0.00014 22.7 9.3 99 2-105 20-132 (136)
283 PF04551 GcpE: GcpE protein; 83.6 3.3 7.2E-05 27.9 4.4 73 32-104 271-358 (359)
284 PRK00366 ispG 4-hydroxy-3-meth 82.8 5.9 0.00013 26.8 5.3 74 32-105 271-357 (360)
285 PF09822 ABC_transp_aux: ABC-t 82.3 11 0.00023 24.2 12.3 54 20-73 24-88 (271)
286 cd03025 DsbA_FrnE_like DsbA fa 81.4 2.8 6.1E-05 25.0 3.4 21 64-84 160-180 (193)
287 COG1393 ArsC Arsenate reductas 81.1 2.6 5.7E-05 23.7 2.9 22 24-45 3-24 (117)
288 cd03053 GST_N_Phi GST_N family 81.0 5.2 0.00011 19.9 4.8 52 24-78 2-57 (76)
289 cd03022 DsbA_HCCA_Iso DsbA fam 81.0 2.1 4.6E-05 25.5 2.8 25 26-50 3-27 (192)
290 PF14437 MafB19-deam: MafB19-l 80.7 9.2 0.0002 22.5 5.3 35 20-57 99-135 (146)
291 PF08806 Sep15_SelM: Sep15/Sel 80.4 3.7 8E-05 21.3 3.1 34 72-105 40-76 (78)
292 PRK13669 hypothetical protein; 80.4 6.5 0.00014 20.5 5.1 54 42-106 20-73 (78)
293 PF03960 ArsC: ArsC family; I 80.0 4.8 0.0001 22.0 3.8 30 27-61 1-30 (110)
294 cd03024 DsbA_FrnE DsbA family, 80.0 3.2 7E-05 24.9 3.3 25 26-50 3-27 (201)
295 PRK10853 putative reductase; P 79.6 3.9 8.5E-05 22.9 3.3 21 24-44 2-22 (118)
296 cd03074 PDI_b'_Calsequestrin_C 79.6 8.7 0.00019 21.5 9.3 86 20-105 20-120 (120)
297 TIGR01616 nitro_assoc nitrogen 78.9 5.7 0.00012 22.6 3.9 21 24-44 3-23 (126)
298 cd03061 GST_N_CLIC GST_N famil 77.2 9.2 0.0002 20.5 6.7 65 30-104 20-85 (91)
299 KOG0855 Alkyl hydroperoxide re 76.9 3 6.5E-05 25.2 2.4 40 18-59 88-132 (211)
300 PRK09481 sspA stringent starva 76.5 15 0.00032 22.5 5.7 59 23-86 10-69 (211)
301 PRK01045 ispH 4-hydroxy-3-meth 75.6 20 0.00044 23.7 7.1 97 5-105 167-279 (298)
302 PRK10026 arsenate reductase; P 75.4 4.4 9.6E-05 23.6 2.8 22 24-45 4-25 (141)
303 COG3531 Predicted protein-disu 75.3 3.6 7.8E-05 25.5 2.5 32 23-55 3-34 (212)
304 cd03030 GRX_SH3BGR Glutaredoxi 73.2 12 0.00026 20.0 4.8 36 50-87 29-72 (92)
305 PF02401 LYTB: LytB protein; 73.2 10 0.00022 24.8 4.3 97 5-105 166-278 (281)
306 cd03049 GST_N_3 GST_N family, 73.0 9.7 0.00021 18.7 4.6 57 26-84 3-60 (73)
307 KOG0911 Glutaredoxin-related p 72.2 22 0.00048 22.5 5.7 74 9-87 128-206 (227)
308 PF14424 Toxin-deaminase: The 72.0 16 0.00036 21.0 5.3 31 25-58 101-131 (133)
309 PF10865 DUF2703: Domain of un 71.7 16 0.00035 20.7 4.9 62 24-90 5-76 (120)
310 TIGR00216 ispH_lytB (E)-4-hydr 70.4 27 0.0006 22.9 6.5 97 5-105 165-277 (280)
311 COG1651 DsbG Protein-disulfide 70.2 4.6 0.0001 25.3 2.3 24 21-44 85-108 (244)
312 PF11317 DUF3119: Protein of u 69.8 14 0.00031 20.8 3.8 35 72-106 81-116 (116)
313 COG3411 Ferredoxin [Energy pro 68.7 13 0.00029 18.6 3.6 29 73-105 16-45 (64)
314 COG0450 AhpC Peroxiredoxin [Po 68.1 26 0.00056 21.7 8.5 86 19-104 32-160 (194)
315 COG4604 CeuD ABC-type enteroch 67.7 29 0.00062 22.0 5.6 50 33-90 169-219 (252)
316 cd03058 GST_N_Tau GST_N family 66.3 15 0.00032 18.2 4.7 50 26-78 3-54 (74)
317 cd03021 DsbA_GSTK DsbA family, 65.9 18 0.00039 22.2 4.2 34 24-57 3-37 (209)
318 cd03044 GST_N_EF1Bgamma GST_N 65.6 16 0.00034 18.2 4.4 51 26-79 3-56 (75)
319 PF07293 DUF1450: Protein of u 65.0 18 0.0004 18.8 4.7 57 39-106 17-73 (78)
320 PF14639 YqgF: Holliday-juncti 65.0 20 0.00044 21.1 4.1 43 7-50 49-91 (150)
321 TIGR00612 ispG_gcpE 1-hydroxy- 64.7 11 0.00024 25.4 3.2 40 51-90 289-333 (346)
322 cd03376 TPP_PFOR_porB_like Thi 64.1 34 0.00074 21.6 6.9 29 2-30 172-200 (235)
323 KOG4498 Uncharacterized conser 63.7 20 0.00044 22.1 3.9 46 13-58 44-91 (197)
324 PF14307 Glyco_tran_WbsX: Glyc 63.0 27 0.00059 23.4 4.9 40 19-58 157-198 (345)
325 PF09547 Spore_IV_A: Stage IV 62.5 39 0.00084 23.9 5.5 52 8-61 168-219 (492)
326 TIGR01287 nifH nitrogenase iro 61.8 9.3 0.0002 24.4 2.5 58 12-71 213-270 (275)
327 cd02015 TPP_AHAS Thiamine pyro 61.8 15 0.00032 22.1 3.3 28 3-30 147-174 (186)
328 cd03375 TPP_OGFOR Thiamine pyr 61.5 18 0.00039 22.0 3.6 28 3-30 157-184 (193)
329 KOG0868 Glutathione S-transfer 61.4 2.4 5.3E-05 25.9 -0.2 61 19-86 3-68 (217)
330 TIGR02182 GRXB Glutaredoxin, G 61.3 32 0.0007 21.0 4.7 55 27-85 3-57 (209)
331 PF12617 LdpA_C: Iron-Sulfur b 61.1 36 0.00078 20.9 5.1 69 33-101 18-93 (183)
332 PF02310 B12-binding: B12 bind 60.9 26 0.00055 19.1 4.3 41 18-58 48-88 (121)
333 PF04908 SH3BGR: SH3-binding, 60.3 25 0.00055 19.2 3.6 41 25-65 3-45 (99)
334 PF11453 DUF2950: Protein of u 60.2 13 0.00028 24.2 2.8 38 66-103 224-261 (271)
335 PF00352 TBP: Transcription fa 59.0 25 0.00054 18.4 3.6 30 74-105 49-79 (86)
336 KOG1422 Intracellular Cl- chan 58.9 43 0.00094 21.1 6.9 65 31-105 20-85 (221)
337 PF11072 DUF2859: Protein of u 58.6 21 0.00045 20.9 3.3 35 42-79 103-137 (142)
338 TIGR03765 ICE_PFL_4695 integra 57.9 18 0.00039 20.0 2.8 18 62-79 82-99 (105)
339 PF13409 GST_N_2: Glutathione 57.6 23 0.00049 17.5 5.0 53 31-86 1-57 (70)
340 PF15379 DUF4606: Domain of un 56.8 11 0.00024 20.7 1.9 17 29-45 31-47 (104)
341 COG2077 Tpx Peroxiredoxin [Pos 56.0 42 0.0009 20.0 5.6 42 19-60 43-85 (158)
342 PRK10387 glutaredoxin 2; Provi 55.3 31 0.00068 20.8 4.0 55 27-85 4-58 (210)
343 cd02010 TPP_ALS Thiamine pyrop 54.4 20 0.00043 21.4 2.9 27 3-29 143-169 (177)
344 cd02003 TPP_IolD Thiamine pyro 53.8 20 0.00043 22.0 2.9 26 3-28 157-182 (205)
345 cd03054 GST_N_Metaxin GST_N fa 51.9 12 0.00027 18.3 1.6 41 30-79 14-54 (72)
346 KOG4079 Putative mitochondrial 51.6 24 0.00053 20.6 2.8 35 73-107 73-109 (169)
347 COG2101 SPT15 TATA-box binding 51.2 45 0.00097 20.4 3.9 28 76-105 55-83 (185)
348 PF07315 DUF1462: Protein of u 50.7 40 0.00086 18.2 8.6 67 31-101 8-92 (93)
349 PF07700 HNOB: Heme NO binding 50.2 53 0.0011 19.5 5.2 32 20-51 127-158 (171)
350 COG1744 Med Uncharacterized AB 50.2 76 0.0017 21.4 5.3 48 5-59 82-129 (345)
351 PRK11865 pyruvate ferredoxin o 50.1 74 0.0016 21.2 6.7 56 3-59 184-243 (299)
352 PRK11752 putative S-transferas 50.0 66 0.0014 20.6 5.8 55 25-79 45-106 (264)
353 PRK11119 proX glycine betaine 50.0 30 0.00066 23.1 3.4 28 4-31 185-212 (331)
354 COG5494 Predicted thioredoxin/ 49.9 65 0.0014 20.5 6.9 71 26-103 15-86 (265)
355 cd06353 PBP1_BmpA_Med_like Per 49.4 67 0.0014 20.4 5.3 48 5-59 42-89 (258)
356 cd03062 TRX_Fd_Sucrase TRX-lik 49.4 41 0.00089 18.0 4.2 30 73-106 52-84 (97)
357 cd02005 TPP_PDC_IPDC Thiamine 49.4 33 0.00072 20.6 3.3 27 3-29 146-173 (183)
358 PRK06163 hypothetical protein; 49.1 38 0.00082 20.9 3.6 28 3-30 146-173 (202)
359 PRK12360 4-hydroxy-3-methylbut 49.1 75 0.0016 20.9 7.5 95 5-105 168-278 (281)
360 PRK14811 formamidopyrimidine-D 49.1 3.7 8E-05 26.5 -0.8 11 30-40 256-266 (269)
361 TIGR02652 conserved hypothetic 49.0 6.7 0.00015 22.9 0.3 13 31-43 11-23 (163)
362 PF03227 GILT: Gamma interfero 48.8 45 0.00097 18.2 4.2 16 24-39 3-18 (108)
363 TIGR03439 methyl_EasF probable 48.7 53 0.0012 22.0 4.4 36 23-61 79-114 (319)
364 PF09654 DUF2396: Protein of u 48.5 6.7 0.00014 22.8 0.2 13 31-43 8-20 (161)
365 TIGR02743 TraW type-F conjugat 48.2 20 0.00043 22.3 2.3 26 60-86 172-197 (202)
366 COG0266 Nei Formamidopyrimidin 47.9 5.5 0.00012 25.9 -0.2 9 29-37 265-273 (273)
367 cd01840 SGNH_hydrolase_yrhL_li 46.5 56 0.0012 18.7 5.3 15 20-34 51-65 (150)
368 TIGR03414 ABC_choline_bnd chol 46.1 41 0.00088 22.0 3.6 27 5-31 156-182 (290)
369 PF08353 DUF1727: Domain of un 45.4 55 0.0012 18.3 4.5 71 3-75 2-77 (113)
370 PLN02402 cytidine deaminase 45.0 57 0.0012 21.8 4.0 22 21-42 93-114 (303)
371 PRK01103 formamidopyrimidine/5 44.6 5.9 0.00013 25.6 -0.4 6 31-36 267-272 (274)
372 cd03371 TPP_PpyrDC Thiamine py 44.5 42 0.00092 20.3 3.3 27 3-29 136-162 (188)
373 PLN02378 glutathione S-transfe 43.6 44 0.00095 20.5 3.3 46 30-78 18-64 (213)
374 PTZ00151 translationally contr 43.2 33 0.00071 20.8 2.6 37 47-84 127-167 (172)
375 PRK09628 oorB 2-oxoglutarate-a 43.2 49 0.0011 21.6 3.6 31 2-33 173-203 (277)
376 cd02018 TPP_PFOR Thiamine pyro 42.8 54 0.0012 20.8 3.7 29 3-31 175-204 (237)
377 KOG3782 Predicted membrane pro 42.7 77 0.0017 19.2 4.7 57 31-105 26-85 (189)
378 COG1125 OpuBA ABC-type proline 42.4 1E+02 0.0022 20.5 7.0 69 13-89 146-218 (309)
379 cd03039 GST_N_Sigma_like GST_N 41.6 30 0.00064 16.9 2.0 50 27-79 4-55 (72)
380 cd03038 GST_N_etherase_LigE GS 41.1 42 0.00091 17.0 2.6 66 29-103 13-81 (84)
381 KOG3286 Selenoprotein T [Gener 41.1 91 0.002 19.6 5.1 78 22-99 70-151 (226)
382 cd02013 TPP_Xsc_like Thiamine 40.8 56 0.0012 19.9 3.4 27 3-29 149-178 (196)
383 cd04518 TBP_archaea archaeal T 40.3 85 0.0018 19.0 4.4 28 76-105 140-168 (174)
384 PRK14810 formamidopyrimidine-D 40.2 8.3 0.00018 25.0 -0.3 6 31-36 266-271 (272)
385 PF02608 Bmp: Basic membrane p 39.9 1E+02 0.0022 20.2 4.7 48 6-60 47-94 (306)
386 COG4555 NatA ABC-type Na+ tran 39.8 1E+02 0.0022 19.7 4.8 65 19-91 149-217 (245)
387 cd03042 GST_N_Zeta GST_N famil 39.7 48 0.001 16.0 4.5 49 27-78 4-56 (73)
388 PRK13738 conjugal transfer pil 39.5 19 0.00042 22.5 1.3 28 60-87 170-198 (209)
389 PRK00087 4-hydroxy-3-methylbut 39.4 1.6E+02 0.0034 21.9 6.6 94 5-104 165-274 (647)
390 PLN02817 glutathione dehydroge 38.9 56 0.0012 21.1 3.3 47 30-79 71-118 (265)
391 TIGR00595 priA primosomal prot 38.5 1.5E+02 0.0032 21.3 8.1 22 40-61 273-294 (505)
392 cd03050 GST_N_Theta GST_N fami 38.5 53 0.0011 16.1 6.1 54 26-84 3-60 (76)
393 KOG1731 FAD-dependent sulfhydr 38.4 46 0.00099 24.3 3.0 39 69-107 232-271 (606)
394 COG0769 MurE UDP-N-acetylmuram 37.8 1.5E+02 0.0032 21.1 5.5 55 3-59 340-396 (475)
395 PRK13945 formamidopyrimidine-D 37.6 9 0.0002 24.9 -0.4 6 31-36 276-281 (282)
396 cd02006 TPP_Gcl Thiamine pyrop 37.6 61 0.0013 19.8 3.3 26 3-28 163-192 (202)
397 PRK15113 glutathione S-transfe 37.5 97 0.0021 18.9 6.4 56 21-79 3-64 (214)
398 PF02610 Arabinose_Isome: L-ar 37.1 1.4E+02 0.003 20.6 4.9 45 3-47 54-98 (359)
399 PF14399 Transpep_BrtH: NlpC/p 36.9 63 0.0014 21.0 3.4 34 4-37 72-105 (317)
400 cd03048 GST_N_Ure2p_like GST_N 36.7 60 0.0013 16.2 4.5 71 27-106 4-80 (81)
401 COG1453 Predicted oxidoreducta 36.6 1.5E+02 0.0032 20.7 7.4 45 10-60 133-181 (391)
402 PF03266 NTPase_1: NTPase; In 36.6 95 0.0021 18.5 4.5 48 7-61 112-159 (168)
403 TIGR03759 conj_TIGR03759 integ 36.3 1.1E+02 0.0024 19.1 4.8 35 21-58 109-143 (200)
404 PF08168 NUC205: NUC205 domain 36.2 26 0.00056 16.1 1.1 24 11-34 6-29 (44)
405 PLN00062 TATA-box-binding prot 35.2 1.1E+02 0.0023 18.7 4.3 28 76-105 140-168 (179)
406 PRK00394 transcription factor; 34.5 1.1E+02 0.0024 18.6 4.4 27 76-104 141-168 (179)
407 TIGR03406 FeS_long_SufT probab 34.2 1.1E+02 0.0024 18.6 4.3 39 22-60 116-154 (174)
408 cd00652 TBP_TLF TATA box bindi 34.1 1.1E+02 0.0024 18.5 4.4 28 76-105 141-169 (174)
409 KOG3160 Gamma-interferon induc 33.8 40 0.00087 21.3 2.0 22 18-39 37-58 (220)
410 PF14369 zf-RING_3: zinc-finge 33.6 12 0.00026 16.2 -0.2 10 30-39 3-12 (35)
411 cd04516 TBP_eukaryotes eukaryo 33.5 1.1E+02 0.0025 18.5 4.3 27 77-105 141-168 (174)
412 PF07895 DUF1673: Protein of u 33.2 15 0.00032 22.8 0.1 11 30-40 12-22 (205)
413 KOG2741 Dimeric dihydrodiol de 32.9 1.6E+02 0.0036 20.2 6.0 54 4-59 107-160 (351)
414 PF11238 DUF3039: Protein of u 32.9 19 0.00042 17.6 0.4 30 13-42 17-57 (58)
415 TIGR00762 DegV EDD domain prot 32.7 93 0.002 20.1 3.6 42 60-102 10-51 (275)
416 PF06220 zf-U1: U1 zinc finger 32.6 14 0.0003 16.3 -0.1 10 30-39 4-13 (38)
417 cd06538 CIDE_N_FSP27 CIDE_N do 32.4 82 0.0018 16.5 2.8 24 64-87 29-52 (79)
418 PF06279 DUF1033: Protein of u 32.1 32 0.00069 19.6 1.3 29 19-47 56-88 (120)
419 cd03071 PDI_b'_NRX PDIb' famil 32.1 99 0.0021 17.4 8.1 84 21-105 15-115 (116)
420 COG5309 Exo-beta-1,3-glucanase 32.1 1.6E+02 0.0034 19.6 5.3 98 4-104 60-161 (305)
421 COG1129 MglA ABC-type sugar tr 31.2 1.9E+02 0.0042 20.9 5.1 70 24-101 166-242 (500)
422 TIGR00862 O-ClC intracellular 31.1 1.4E+02 0.0031 19.0 6.2 51 30-85 17-68 (236)
423 cd06537 CIDE_N_B CIDE_N domain 31.1 73 0.0016 16.8 2.4 24 64-87 29-52 (81)
424 PF01116 F_bP_aldolase: Fructo 31.1 1.6E+02 0.0035 19.4 6.0 49 2-50 23-73 (287)
425 PF05988 DUF899: Bacterial pro 31.0 1.4E+02 0.0031 18.8 6.8 63 29-91 82-174 (211)
426 KOG4175 Tryptophan synthase al 30.8 1.5E+02 0.0032 18.9 5.5 49 7-57 3-51 (268)
427 PRK11869 2-oxoacid ferredoxin 30.4 1.3E+02 0.0028 19.8 4.0 31 3-34 166-196 (280)
428 PF02042 RWP-RK: RWP-RK domain 30.2 39 0.00084 16.1 1.2 16 61-76 31-46 (52)
429 PRK03957 V-type ATP synthase s 30.2 98 0.0021 16.7 5.7 66 36-106 30-95 (100)
430 cd04517 TLF TBP-like factors ( 30.1 1.3E+02 0.0029 18.2 4.3 28 76-105 141-169 (174)
431 PHA02131 hypothetical protein 29.6 77 0.0017 15.4 3.4 28 71-98 26-53 (70)
432 PRK09027 cytidine deaminase; P 29.5 76 0.0016 21.1 2.8 23 21-43 118-140 (295)
433 PF02591 DUF164: Putative zinc 29.4 66 0.0014 15.2 2.0 29 20-48 13-43 (56)
434 TIGR03846 sulfopy_beta sulfopy 29.3 96 0.0021 18.7 3.1 27 3-30 130-156 (181)
435 cd05863 Ig2_VEGFR-3 Second imm 29.3 61 0.0013 15.9 1.9 15 73-87 11-25 (67)
436 COG2999 GrxB Glutaredoxin 2 [P 29.3 31 0.00068 21.3 1.0 46 29-77 6-51 (215)
437 PF01883 DUF59: Domain of unkn 29.3 81 0.0018 15.5 3.2 29 25-53 40-68 (72)
438 PF04069 OpuAC: Substrate bind 29.2 70 0.0015 20.2 2.6 27 5-31 154-180 (257)
439 PLN02182 cytidine deaminase 28.8 1.2E+02 0.0026 20.7 3.6 14 29-42 129-142 (339)
440 PRK11867 2-oxoglutarate ferred 28.6 1.3E+02 0.0029 19.7 3.8 27 4-30 176-202 (286)
441 PF10750 DUF2536: Protein of u 28.5 90 0.002 15.8 3.4 27 3-29 17-43 (68)
442 PF04909 Amidohydro_2: Amidohy 28.5 37 0.00081 21.1 1.3 52 11-62 121-175 (273)
443 TIGR02177 PorB_KorB 2-oxoacid: 28.5 1.3E+02 0.0028 19.9 3.7 33 4-37 160-192 (287)
444 KOG1734 Predicted RING-contain 28.5 26 0.00057 22.9 0.6 9 29-37 270-278 (328)
445 PF15358 TSKS: Testis-specific 28.4 60 0.0013 22.8 2.2 17 29-45 451-467 (558)
446 PF11539 DUF3228: Protein of u 28.2 87 0.0019 19.4 2.7 29 5-33 26-54 (197)
447 cd05855 Ig_TrkB_d5 Fifth domai 28.1 53 0.0011 16.9 1.6 15 73-87 11-25 (79)
448 TIGR02836 spore_IV_A stage IV 28.1 2.3E+02 0.005 20.4 5.4 48 9-60 169-218 (492)
449 cd06396 PB1_NBR1 The PB1 domai 28.0 1E+02 0.0022 16.2 3.3 20 3-22 54-73 (81)
450 COG0028 IlvB Thiamine pyrophos 27.9 81 0.0018 22.9 3.0 29 2-30 503-531 (550)
451 PF06827 zf-FPG_IleRS: Zinc fi 27.8 13 0.00029 15.1 -0.5 10 28-37 20-29 (30)
452 KOG2893 Zn finger protein [Gen 27.8 18 0.0004 23.2 -0.1 13 28-40 9-21 (341)
453 KOG0633 Histidinol phosphate a 27.8 1.9E+02 0.0041 19.3 7.0 92 10-104 149-252 (375)
454 TIGR01355 cyt_deam_dimer cytid 27.8 84 0.0018 20.8 2.8 22 21-42 90-111 (283)
455 cd02070 corrinoid_protein_B12- 27.6 1.5E+02 0.0033 18.1 5.7 53 19-71 131-185 (201)
456 COG0625 Gst Glutathione S-tran 27.5 1.5E+02 0.0032 18.0 4.3 51 26-79 3-56 (211)
457 TIGR01101 V_ATP_synt_F vacuola 27.5 1.2E+02 0.0027 17.0 6.3 63 37-106 47-114 (115)
458 PF07511 DUF1525: Protein of u 27.2 47 0.001 18.7 1.4 13 68-80 78-90 (114)
459 TIGR03757 conj_TIGR03757 integ 27.2 48 0.001 18.6 1.4 13 68-80 79-91 (113)
460 cd07973 Spt4 Transcription elo 27.1 1.2E+02 0.0025 16.6 3.5 68 27-103 18-93 (98)
461 PRK12411 cytidine deaminase; P 26.8 36 0.00078 19.6 0.9 13 30-42 84-96 (132)
462 COG5254 ARV1 Predicted membran 26.4 38 0.00083 21.2 1.0 16 30-45 25-40 (239)
463 KOG0852 Alkyl hydroperoxide re 26.3 1.7E+02 0.0036 18.1 8.2 86 19-104 32-160 (196)
464 COG4175 ProV ABC-type proline/ 26.3 1.6E+02 0.0034 20.3 3.8 69 15-91 177-249 (386)
465 COG5270 PUA domain (predicted 26.0 27 0.00058 21.5 0.3 18 20-37 5-22 (202)
466 PF09499 RE_ApaLI: ApaLI-like 25.9 1.7E+02 0.0037 18.1 4.0 33 19-51 142-174 (191)
467 COG1307 DegV Uncharacterized p 25.8 1.7E+02 0.0037 19.2 4.0 27 59-85 11-37 (282)
468 COG1198 PriA Primosomal protei 25.3 1.7E+02 0.0036 22.3 4.1 22 41-62 496-517 (730)
469 PRK11866 2-oxoacid ferredoxin 25.3 1.6E+02 0.0035 19.4 3.7 30 4-34 166-195 (279)
470 PRK05778 2-oxoglutarate ferred 25.3 1.5E+02 0.0033 19.7 3.7 33 3-36 176-208 (301)
471 KOG4277 Uncharacterized conser 25.2 2.3E+02 0.0049 19.3 8.5 85 11-103 144-229 (468)
472 PF10262 Rdx: Rdx family; Int 25.0 1.1E+02 0.0023 15.5 8.7 66 27-104 6-76 (76)
473 PF10407 Cytokin_check_N: Cdc1 24.6 1.1E+02 0.0025 15.7 4.2 34 24-57 5-41 (73)
474 PF14421 LmjF365940-deam: A di 24.5 1.3E+02 0.0028 18.6 2.9 27 31-60 156-182 (193)
475 PF01216 Calsequestrin: Calseq 24.5 2.5E+02 0.0054 19.5 9.4 87 20-106 268-369 (383)
476 PF14430 Imm1: Immunity protei 24.4 1.4E+02 0.0031 16.7 3.1 31 2-32 14-44 (127)
477 PRK02935 hypothetical protein; 24.3 20 0.00044 19.8 -0.4 15 31-45 72-86 (110)
478 PRK05578 cytidine deaminase; V 24.2 43 0.00094 19.2 0.9 13 30-42 84-96 (131)
479 COG1352 CheR Methylase of chem 24.1 2.2E+02 0.0047 18.7 5.6 40 23-62 96-140 (268)
480 PF04472 DUF552: Protein of un 24.0 1.1E+02 0.0024 15.3 4.1 47 2-49 5-51 (73)
481 KOG3679 Predicted coiled-coil 24.0 55 0.0012 22.8 1.5 32 28-59 240-273 (802)
482 PRK02228 V-type ATP synthase s 23.9 1.3E+02 0.0029 16.2 6.7 62 36-106 30-95 (100)
483 PF03470 zf-XS: XS zinc finger 23.8 25 0.00055 16.1 -0.1 7 32-38 1-7 (43)
484 PRK07449 2-succinyl-5-enolpyru 23.7 2.9E+02 0.0062 20.0 5.1 29 2-30 521-549 (568)
485 COG1519 KdtA 3-deoxy-D-manno-o 23.7 1.4E+02 0.0031 21.0 3.4 36 23-58 50-85 (419)
486 cd00947 TBP_aldolase_IIB Tagat 23.6 2.2E+02 0.0049 18.7 6.5 48 2-49 19-68 (276)
487 PRK06848 hypothetical protein; 23.6 45 0.00097 19.4 0.9 13 30-42 95-107 (139)
488 PRK07418 acetolactate synthase 23.5 1.1E+02 0.0023 22.4 2.9 29 2-30 531-559 (616)
489 PLN02470 acetolactate synthase 23.1 1.1E+02 0.0024 22.2 2.9 28 3-30 530-557 (585)
490 PF14714 KH_dom-like: KH-domai 23.1 90 0.002 16.2 1.9 18 64-81 63-80 (80)
491 PF09936 Methyltrn_RNA_4: SAM- 23.1 1.5E+02 0.0033 18.3 3.1 15 18-32 130-144 (185)
492 PF14431 YwqJ-deaminase: YwqJ- 23.0 39 0.00085 19.1 0.6 14 29-42 110-123 (125)
493 PRK05858 hypothetical protein; 22.9 1.4E+02 0.003 21.5 3.3 28 3-30 503-530 (542)
494 PF06122 TraH: Conjugative rel 22.7 59 0.0013 22.1 1.5 22 29-50 94-115 (361)
495 PRK11579 putative oxidoreducta 22.7 2.4E+02 0.0053 18.8 4.7 39 5-43 100-138 (346)
496 PF11211 DUF2997: Protein of u 22.7 1E+02 0.0022 14.4 3.9 30 77-106 3-35 (48)
497 PF08726 EFhand_Ca_insen: Ca2+ 22.7 88 0.0019 15.8 1.8 22 3-25 2-23 (69)
498 TIGR02945 SUF_assoc FeS assemb 22.5 1.4E+02 0.003 15.8 4.4 38 22-59 40-77 (99)
499 PF05176 ATP-synt_10: ATP10 pr 22.4 2.3E+02 0.005 18.3 5.8 50 53-102 193-247 (252)
500 PF07351 DUF1480: Protein of u 22.3 86 0.0019 16.3 1.7 24 55-78 29-56 (80)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=139.52 Aligned_cols=102 Identities=37% Similarity=0.708 Sum_probs=94.5
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
.+.+..++++.+. +++.||+|.|||+||++|+.+.|.++++..++.+ +.++.+|.|+..+++.+|+|..+|++++|
T Consensus 46 ~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 46 NVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 3567777877775 5799999999999999999999999999999875 99999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 81 KNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 81 ~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
++|+.+++..|. +.+.+.++|++++.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999 99999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-27 Score=130.06 Aligned_cols=102 Identities=52% Similarity=0.934 Sum_probs=92.8
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
+.+..+++.....+...+++++|.||++||++|+.+.|.+.+++.+|+++.|+.+|+|+..++++.+++..+||++++++
T Consensus 4 v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~ 83 (106)
T KOG0907|consen 4 VETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKG 83 (106)
T ss_pred EEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEEC
Confidence 44556677777776667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHHH
Q 044943 83 GKEVDKVVGADKSALERKIAQH 104 (107)
Q Consensus 83 g~~~~~~~g~~~~~l~~~i~~~ 104 (107)
|+.+.+..|.+.+++++.++++
T Consensus 84 g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 84 GEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CEEEEEEecCCHHHHHHHHHhc
Confidence 9999999999888998888764
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.95 E-value=7.6e-27 Score=128.19 Aligned_cols=98 Identities=31% Similarity=0.453 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch---hHHhhcccCccceEEEEe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR---DVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~v~~~P~~~~~~ 81 (107)
+.+++++.+.. ..+++++|.||++||++|+.+.|.+.++++.++++.++.+|.++.. +++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 56788888865 3589999999999999999999999999999988999999998774 789999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHHH
Q 044943 82 NGKEVDKVVGADKSALERKIAQH 104 (107)
Q Consensus 82 ~g~~~~~~~g~~~~~l~~~i~~~ 104 (107)
+|+.+.+..|..++++.+.+.++
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHhc
Confidence 99999999999888888877653
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.95 E-value=8.3e-27 Score=128.77 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
.+++++.+.. +.+++++|.||++||++|+.+.|.+.+++.++++ +.|+.+|.++.+++.++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 4567777653 3688999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred EEEEEcCC
Q 044943 85 EVDKVVGA 92 (107)
Q Consensus 85 ~~~~~~g~ 92 (107)
.+.+..|.
T Consensus 80 ~v~~~~G~ 87 (114)
T cd02954 80 HMKIDLGT 87 (114)
T ss_pred EEEEEcCC
Confidence 99998884
No 5
>PHA02278 thioredoxin-like protein
Probab=99.94 E-value=1.2e-25 Score=122.97 Aligned_cols=93 Identities=22% Similarity=0.356 Sum_probs=80.7
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCc----hhHHhhcccCccceEE
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEA----RDVATRWNIGSVPTFF 78 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~v~~~P~~~ 78 (107)
.+.++|++.+ .++++++|+|||+||++|+.+.|.+.++++.+. ...++.+|++.. ++++++|+|.++||++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 4566666666 478999999999999999999999999988743 477899999875 6899999999999999
Q ss_pred EEeCCeEEEEEcCC-CHHHHHHH
Q 044943 79 FIKNGKEVDKVVGA-DKSALERK 100 (107)
Q Consensus 79 ~~~~g~~~~~~~g~-~~~~l~~~ 100 (107)
+|++|+.+.+..|. +.+.+.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999997 88877664
No 6
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.94 E-value=2.1e-25 Score=122.02 Aligned_cols=99 Identities=37% Similarity=0.757 Sum_probs=91.3
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
..+.++|++.+.+ ++++++|.||++||++|+.+.|.+.++++.++ ++.++.+|+++.+.++++|++.++|++++++
T Consensus 3 ~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 3 VLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp EESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred ECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 3466777777753 58999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHHH
Q 044943 82 NGKEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 82 ~g~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
+|+...++.|. +.+.|.++|+++
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999 999999999875
No 7
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.94 E-value=3.8e-25 Score=121.23 Aligned_cols=97 Identities=29% Similarity=0.570 Sum_probs=86.8
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEEE
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~ 79 (107)
.+.+.+++++.+ +.+++++|+||++||++|+.+.|.+++++..++ .+.++.+|.+ ..+++++|++.++|++++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 366777777765 368999999999999999999999999999886 3789999999 788999999999999999
Q ss_pred EeCCeEEEEEcCCCHHHHHHHHHH
Q 044943 80 IKNGKEVDKVVGADKSALERKIAQ 103 (107)
Q Consensus 80 ~~~g~~~~~~~g~~~~~l~~~i~~ 103 (107)
|++|+.+.+..|.+++.+.++|++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 78 YKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EECCEEEEEEecCChHHHHHHHhh
Confidence 999999999999999999988875
No 8
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.93 E-value=6.2e-25 Score=119.10 Aligned_cols=93 Identities=26% Similarity=0.470 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCeEE
Q 044943 8 EFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 8 ~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
+|++.+.. ..+++++|+||++||++|+.+.|.+++++..+++ +.++.+|++..+.++++|++.++|+++++++|+.+
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 45555543 3578999999999999999999999999998864 88999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHH
Q 044943 87 DKVVGA-DKSALERKIA 102 (107)
Q Consensus 87 ~~~~g~-~~~~l~~~i~ 102 (107)
.+..|. +.+++.++|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 999998 8999988763
No 9
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.93 E-value=1.3e-24 Score=124.16 Aligned_cols=102 Identities=24% Similarity=0.361 Sum_probs=90.4
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEE-E
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFF-F 79 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~-~ 79 (107)
.+.|.+++++.+.. ..+++++|.||++||++|+.+.|.+.++++++++ +.++.+|+|+.+++++.|++.+.|+++ +
T Consensus 7 ~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 7 HLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred hhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 46788899999875 3689999999999999999999999999999988 788999999999999999999777666 7
Q ss_pred EeCCe-EEEEEcC--------C-CHHHHHHHHHHHh
Q 044943 80 IKNGK-EVDKVVG--------A-DKSALERKIAQHA 105 (107)
Q Consensus 80 ~~~g~-~~~~~~g--------~-~~~~l~~~i~~~~ 105 (107)
|++|+ .+.+..| . +.++|.+.++.++
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 79998 9999999 5 7788888887654
No 10
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.93 E-value=6.5e-25 Score=121.96 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
..++++.+.. ...+++++|.||++||+.|+.+.|.+.++++.++ ++.++.+|++..+.++++|+|.++|++++|++|
T Consensus 11 ~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 11 FSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred HHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 3445443322 2368999999999999999999999999999886 589999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHHH
Q 044943 84 KEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 84 ~~~~~~~g~-~~~~l~~~i~~ 103 (107)
+.+.+..|. +.+.+.++|++
T Consensus 90 ~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEEecCCCCHHHHHHHHhc
Confidence 999999998 89999999875
No 11
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.93 E-value=1.3e-24 Score=118.70 Aligned_cols=83 Identities=17% Similarity=0.335 Sum_probs=77.2
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc-CchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHH
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID-EARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKS 95 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~ 95 (107)
.++++++|.||++||++|+.+.|.++++++.++++.++.+|.+ ..+.++++|++.++||+++|++| .+.++.|. +.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~ 94 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLD 94 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHH
Confidence 4789999999999999999999999999999999999999998 78999999999999999999988 78889998 888
Q ss_pred HHHHHH
Q 044943 96 ALERKI 101 (107)
Q Consensus 96 ~l~~~i 101 (107)
.+.+++
T Consensus 95 ~l~~f~ 100 (100)
T cd02999 95 SLAAFY 100 (100)
T ss_pred HHHhhC
Confidence 888764
No 12
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.92 E-value=3.4e-24 Score=116.33 Aligned_cols=95 Identities=38% Similarity=0.774 Sum_probs=85.1
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhh-CCCeEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
|.+++++.+... .+++++|.||++||+.|+.+.+.+.++++. .+++.++.+|.+..++++++|++.++|++++|++|
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 356677777653 269999999999999999999999999988 66899999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHH
Q 044943 84 KEVDKVVGADKSALERKI 101 (107)
Q Consensus 84 ~~~~~~~g~~~~~l~~~i 101 (107)
+.+.+..|..+++|.+.|
T Consensus 79 ~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEEeCCCHHHHHHhh
Confidence 999999999888888765
No 13
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=135.43 Aligned_cols=101 Identities=30% Similarity=0.567 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
+..+|++.+.+. ...+||+|.||+|||++|+.+.|.+.++...+.+ +.+++||+|..+.+...|||.++|+++.|++|
T Consensus 29 T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dG 107 (304)
T COG3118 29 TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDG 107 (304)
T ss_pred hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCC
Confidence 556788888774 4567999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 84 KEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 84 ~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
+.+..+.|. .++.+++|++++++
T Consensus 108 qpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 108 QPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred cCccccCCCCcHHHHHHHHHHhcC
Confidence 999999999 88899999998875
No 14
>PRK10996 thioredoxin 2; Provisional
Probab=99.92 E-value=8.5e-24 Score=121.58 Aligned_cols=93 Identities=34% Similarity=0.687 Sum_probs=84.7
Q ss_pred HHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcC
Q 044943 13 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 91 (107)
Q Consensus 13 ~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 91 (107)
++...+++++++|.||++||++|+.+.+.+.++++.+. ++.++.+|.+..++++++|++.++|++++|++|+.+.+..|
T Consensus 45 ~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G 124 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNG 124 (139)
T ss_pred HHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcC
Confidence 33444679999999999999999999999999998876 59999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHHHHh
Q 044943 92 A-DKSALERKIAQHA 105 (107)
Q Consensus 92 ~-~~~~l~~~i~~~~ 105 (107)
. +.+.+.+++++++
T Consensus 125 ~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 125 AVPKAPFDSWLNEAL 139 (139)
T ss_pred CCCHHHHHHHHHHhC
Confidence 8 9999999998764
No 15
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=2.8e-24 Score=119.31 Aligned_cols=93 Identities=11% Similarity=0.182 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHH-hhcccCccceEEEEeCCe
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVA-TRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~v~~~P~~~~~~~g~ 84 (107)
++|++..+ ..+++++++|.||++||++|+.++|.++++++.+++ +.++.||++.+..++ ++|+|.++||+++|++|+
T Consensus 17 ~~f~~~~~-v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 17 GQLDYAEE-LRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred hhhHHHHh-cccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 34444432 146899999999999999999999999999999875 889999999999998 589999999999999999
Q ss_pred EEEEEcCC-CHHHHHHH
Q 044943 85 EVDKVVGA-DKSALERK 100 (107)
Q Consensus 85 ~~~~~~g~-~~~~l~~~ 100 (107)
...++.|. +.+.+..+
T Consensus 96 ~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 96 GPIEYKGPMRAPYMEKF 112 (113)
T ss_pred cceEEeCCCCHHHHHhh
Confidence 88889898 88888765
No 16
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=2.6e-24 Score=117.71 Aligned_cols=92 Identities=16% Similarity=0.379 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
+.++|++.+ .++++++|.||++||++|+.+.|.+.++++.+++ +.++.+|+++.+.++++|++.++|++++|++|
T Consensus 7 ~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 7 DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence 345666554 4579999999999999999999999999999875 89999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHH
Q 044943 84 KEVDKVVGA-DKSALERK 100 (107)
Q Consensus 84 ~~~~~~~g~-~~~~l~~~ 100 (107)
+.+.++.|. +.+.|.++
T Consensus 83 ~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 83 MNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCcccCCCCCCHHHHHhh
Confidence 988889898 88877764
No 17
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=3.7e-24 Score=117.59 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
+.+++++.+. +.+++++|.||++||+.|+.+.|.++++++.+. .+.++.+|+++.++++++|++.++|++++|++|
T Consensus 7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 4556766654 457799999999999999999999999999876 489999999999999999999999999999877
Q ss_pred -eEEEEEcCC-C-HHHHHHHH
Q 044943 84 -KEVDKVVGA-D-KSALERKI 101 (107)
Q Consensus 84 -~~~~~~~g~-~-~~~l~~~i 101 (107)
+.+.++.|. + .++|.++|
T Consensus 84 ~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 84 ASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCceEccCCCCCHHHHHhhC
Confidence 888999998 6 88887764
No 18
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.92 E-value=5.5e-24 Score=118.49 Aligned_cols=87 Identities=28% Similarity=0.415 Sum_probs=78.7
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
+|++.+++++.+ +++++++|+||++||+.|+.+.|.+.++++.++++.++.+|.++.+.+.++|++.++|++++|+
T Consensus 8 ~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 8 EVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred EeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 356666776666 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCC
Q 044943 82 NGKEVDKVVGA 92 (107)
Q Consensus 82 ~g~~~~~~~g~ 92 (107)
+|+.+.+..|.
T Consensus 84 ~G~~v~~~~g~ 94 (113)
T cd02989 84 NGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEEECc
Confidence 99999987764
No 19
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-24 Score=130.91 Aligned_cols=104 Identities=46% Similarity=0.883 Sum_probs=98.1
Q ss_pred CcccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 1 MGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 1 ~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
|.+.+..+|+..+.. ..+|.++|.|+++||++|++..|.+..++.+|++..|+++|+|+....+..+||..+||+++|
T Consensus 4 i~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 4 IVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred EEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 357788899998886 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHHHHhC
Q 044943 81 KNGKEVDKVVGADKSALERKIAQHAG 106 (107)
Q Consensus 81 ~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (107)
++|..++.+.|.++..|++.++++++
T Consensus 82 ~ng~kid~~qGAd~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 82 RNGVKIDQIQGADASGLEEKVAKYAS 107 (288)
T ss_pred ecCeEeeeecCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999875
No 20
>PRK09381 trxA thioredoxin; Provisional
Probab=99.92 E-value=2e-23 Score=115.54 Aligned_cols=97 Identities=31% Similarity=0.674 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
.+++++.+. +.+++++|+||++||++|+.+.|.++++++.++ ++.++.+|++..+.++++|++.++|++++|++|+
T Consensus 10 ~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 86 (109)
T PRK09381 10 DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCe
Confidence 356665553 468899999999999999999999999999986 4899999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHHHh
Q 044943 85 EVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 85 ~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
.+.+..|. +.+++.++|++++
T Consensus 87 ~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 87 VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEecCCCCHHHHHHHHHHhc
Confidence 99999998 9999999998876
No 21
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.92 E-value=4.2e-24 Score=117.34 Aligned_cols=97 Identities=18% Similarity=0.310 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
.+++++.+.++ ++++++|.|+++||++|+.+.|.+.++++++++ +.|+.+|+++.+++++.|++...|++++|++|+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 46778888764 799999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred EEEEEcCC-----------CHHHHHHHHHHH
Q 044943 85 EVDKVVGA-----------DKSALERKIAQH 104 (107)
Q Consensus 85 ~~~~~~g~-----------~~~~l~~~i~~~ 104 (107)
.+....|. +.+++.+.++.+
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 88755552 446666666543
No 22
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=2e-23 Score=116.77 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=86.3
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChh--hh--hhhHHHHHHHhhC--C-CeEEEEEECcCchhHHhhcccCccceE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGP--CR--FISPLFTNLASKY--T-KVVFLKVDIDEARDVATRWNIGSVPTF 77 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~--C~--~~~~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~~~v~~~P~~ 77 (107)
+.++|++.+. +...+++++||+.||++ |+ .+.|.+.+++.++ . ++.++.+|++++++++++|+|.++||+
T Consensus 15 t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl 91 (120)
T cd03065 15 NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSI 91 (120)
T ss_pred ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEE
Confidence 4577777765 46779999999999977 99 8889999998887 4 699999999999999999999999999
Q ss_pred EEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 78 FFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 78 ~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
++|++|+.+. +.|. +.+.+.++|++++
T Consensus 92 ~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 92 YVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999887 8898 9999999999875
No 23
>PTZ00051 thioredoxin; Provisional
Probab=99.91 E-value=2.1e-23 Score=113.43 Aligned_cols=94 Identities=47% Similarity=0.829 Sum_probs=84.2
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
++.+.+++++.+ +.+++++++||++||++|+.+.+.+.++++.++++.++.+|.+....++++|++.++|++++++
T Consensus 4 ~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 4 IVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred EecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 356666666654 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHH
Q 044943 82 NGKEVDKVVGADKSALER 99 (107)
Q Consensus 82 ~g~~~~~~~g~~~~~l~~ 99 (107)
+|+.+.+..|...++|.+
T Consensus 80 ~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 80 NGSVVDTLLGANDEALKQ 97 (98)
T ss_pred CCeEEEEEeCCCHHHhhc
Confidence 999999999997777654
No 24
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.91 E-value=1.4e-23 Score=121.05 Aligned_cols=95 Identities=23% Similarity=0.519 Sum_probs=82.5
Q ss_pred HHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCc--hhHHhhcccCccceEEEE-eCCeEEE
Q 044943 12 KLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEA--RDVATRWNIGSVPTFFFI-KNGKEVD 87 (107)
Q Consensus 12 ~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~v~~~P~~~~~-~~g~~~~ 87 (107)
.+..+...+++++|+||++||++|+.+.|.+.++++.+. .+.|+.+|++.. ..+.++|++.++|++++| ++|+++.
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 344455689999999999999999999999999999886 477888887754 578999999999999999 5899999
Q ss_pred EEcCC-CHHHHHHHHHHHhC
Q 044943 88 KVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 88 ~~~g~-~~~~l~~~i~~~~~ 106 (107)
+..|. +.+++.+.|++++.
T Consensus 92 ~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 92 QSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEeCCCCHHHHHHHHHHHHc
Confidence 99999 88999999998764
No 25
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.91 E-value=2.9e-23 Score=114.81 Aligned_cols=93 Identities=31% Similarity=0.562 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhC----C---CeEEEEEECcCchhHHhhcccCccceE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY----T---KVVFLKVDIDEARDVATRWNIGSVPTF 77 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~----~---~~~~~~i~~~~~~~~~~~~~v~~~P~~ 77 (107)
+.+++++.+ +.+++++|.||++||++|+.+.|.++++++.+ + .+.++.+|++..++++++|++.++|++
T Consensus 7 ~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl 82 (108)
T cd02996 7 TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTL 82 (108)
T ss_pred CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEE
Confidence 445666544 56789999999999999999999999888753 2 489999999999999999999999999
Q ss_pred EEEeCCe-EEEEEcCC-CHHHHHHHH
Q 044943 78 FFIKNGK-EVDKVVGA-DKSALERKI 101 (107)
Q Consensus 78 ~~~~~g~-~~~~~~g~-~~~~l~~~i 101 (107)
++|++|+ ....+.|. +.+.|.++|
T Consensus 83 ~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 83 KLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999998 45677788 888888764
No 26
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.91 E-value=5.5e-23 Score=114.47 Aligned_cols=99 Identities=16% Similarity=0.309 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEE
Q 044943 8 EFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 8 ~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
++.+.+.+.+..+..++|+||++||++|+.+.+.+++++..++.+.+..+|.++.+++..+|++.++|+++++++|+...
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 34443444456778899999999999999999999999998878999999999999999999999999999998765544
Q ss_pred --EEcCC-CHHHHHHHHHHHhC
Q 044943 88 --KVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 88 --~~~g~-~~~~l~~~i~~~~~ 106 (107)
++.|. +..++.++|+.+++
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eEEEEecCchHHHHHHHHHHHh
Confidence 67788 88999999998764
No 27
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.91 E-value=1.7e-23 Score=116.58 Aligned_cols=87 Identities=28% Similarity=0.471 Sum_probs=77.0
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
|++ ++|.+.+... ..+++++|+||++||+.|+.+.|.+++++..++++.|+.+|.++. .++++|++.++|++++|++
T Consensus 9 i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~ 85 (113)
T cd02957 9 ISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYKN 85 (113)
T ss_pred EcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEEC
Confidence 444 6777777542 225899999999999999999999999999999999999999988 9999999999999999999
Q ss_pred CeEEEEEcCC
Q 044943 83 GKEVDKVVGA 92 (107)
Q Consensus 83 g~~~~~~~g~ 92 (107)
|+.+.+..|.
T Consensus 86 G~~v~~~~G~ 95 (113)
T cd02957 86 GELIDNIVGF 95 (113)
T ss_pred CEEEEEEecH
Confidence 9999998874
No 28
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.90 E-value=1.4e-23 Score=115.37 Aligned_cols=91 Identities=21% Similarity=0.392 Sum_probs=78.6
Q ss_pred HHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCC-CeEEEEEECcC----chhHHhhcccCccceEEEEe--
Q 044943 12 KLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKYT-KVVFLKVDIDE----ARDVATRWNIGSVPTFFFIK-- 81 (107)
Q Consensus 12 ~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~~~-- 81 (107)
.+.++.+++++++|.||++||++|+.+.+.+ .++++.+. ++.++.+|+++ ...++++|++.++|++++|+
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~ 82 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPG 82 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 4455567899999999999999999999887 56777666 79999999976 57899999999999999997
Q ss_pred CCeEEEEEcCC-CHHHHHHHHH
Q 044943 82 NGKEVDKVVGA-DKSALERKIA 102 (107)
Q Consensus 82 ~g~~~~~~~g~-~~~~l~~~i~ 102 (107)
+|+.+.+..|. +.+++.++|+
T Consensus 83 ~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 83 GEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCcccccccCHHHHHHHhC
Confidence 79999999998 9999888763
No 29
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=7.8e-23 Score=112.34 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=81.6
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCC--ChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATW--CGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~--C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
+..+|++.+ +.+.+++|.||++| ||.|+.+.|.+.++++++++ +.++.+|.++.+.++.+|+|.++||+++|+
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fk 91 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFR 91 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEE
Confidence 445666444 57889999999997 99999999999999999987 789999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHH
Q 044943 82 NGKEVDKVVGA-DKSALER 99 (107)
Q Consensus 82 ~g~~~~~~~g~-~~~~l~~ 99 (107)
+|+.+.+..|. +.+++..
T Consensus 92 dGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 92 DGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred CCEEEEEEeCccCHHHHhh
Confidence 99999999998 8887753
No 30
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.90 E-value=1.7e-22 Score=110.02 Aligned_cols=97 Identities=41% Similarity=0.841 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
.+++.+.+. +.+++++|+||++||++|+.+.+.++++++.++ ++.++.+|++....++++|++.++|+++++++|+
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 445555553 346799999999999999999999999998877 5999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHHHh
Q 044943 85 EVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 85 ~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
.+....|. +.+.+.+++++.+
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 99999998 8899999998764
No 31
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.90 E-value=1.1e-22 Score=120.72 Aligned_cols=100 Identities=17% Similarity=0.316 Sum_probs=83.2
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
+|++.++|.+.+... ..+.+++|+||++||+.|+.+.|.+.+++..++.+.|+.||.+.. .++.+|++.++||+++|+
T Consensus 66 ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk 143 (175)
T cd02987 66 ELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYK 143 (175)
T ss_pred EcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEE
Confidence 355557777777542 234699999999999999999999999999999999999999987 899999999999999999
Q ss_pred CCeEEEEEcCC--------CHHHHHHHHHH
Q 044943 82 NGKEVDKVVGA--------DKSALERKIAQ 103 (107)
Q Consensus 82 ~g~~~~~~~g~--------~~~~l~~~i~~ 103 (107)
+|+.+.+..|. +.+.|+.++.+
T Consensus 144 ~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 144 GGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999988764 34455555543
No 32
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.90 E-value=2.3e-22 Score=109.29 Aligned_cols=85 Identities=31% Similarity=0.616 Sum_probs=79.1
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHH
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKS 95 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~ 95 (107)
+.+++++++||++||+.|+.+.+.+.++++.++ ++.+..+|.++.+++..++++.++|+++++++|+++.+..|. +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 578999999999999999999999999998886 589999999999999999999999999999999999999998 888
Q ss_pred HHHHHHH
Q 044943 96 ALERKIA 102 (107)
Q Consensus 96 ~l~~~i~ 102 (107)
++.++++
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 8888763
No 33
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.90 E-value=1.4e-22 Score=110.73 Aligned_cols=92 Identities=28% Similarity=0.626 Sum_probs=79.4
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
+.+++++.+. .+ +++|.||++||++|+.+.|.+.++++.+. ++.++.+|++....++++|++.++|++++|
T Consensus 6 ~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 6 TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 3455666653 34 59999999999999999999999988774 489999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHH
Q 044943 81 KNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 81 ~~g~~~~~~~g~-~~~~l~~~i 101 (107)
++|+.+.++.|. +.+.+.++|
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 999988899998 888887664
No 34
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.90 E-value=1.7e-22 Score=114.33 Aligned_cols=98 Identities=17% Similarity=0.353 Sum_probs=81.8
Q ss_pred HHHHHHHHHhCC-cEEEEEEeCCCChhhhhhhHHHH---HHHhhC-CCeEEEEEECcCc-------------hhHHhhcc
Q 044943 9 FETKLNAATRAL-RLVILYFTATWCGPCRFISPLFT---NLASKY-TKVVFLKVDIDEA-------------RDVATRWN 70 (107)
Q Consensus 9 ~~~~~~~~~~~~-k~~lv~f~~~~C~~C~~~~~~~~---~~~~~~-~~~~~~~i~~~~~-------------~~~~~~~~ 70 (107)
+.+.+..+.+++ ++++|.||++||++|+.+.+.+. .+...+ .++.++.+|.+.. ..++.+|+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 345667777889 99999999999999999999874 454444 3588899998764 68899999
Q ss_pred cCccceEEEEe-C-CeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 71 IGSVPTFFFIK-N-GKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 71 v~~~P~~~~~~-~-g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
+.++|+++++. + |+.+.+..|. +.+.+.++|+.+++
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99999999996 4 6999999998 88999999988764
No 35
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.90 E-value=2e-22 Score=110.05 Aligned_cols=96 Identities=29% Similarity=0.582 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
.+++++.+ .++++++|.||++||+.|+.+.+.+++++..+. ++.++.+|+++.+.++++|++.++|+++++++
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence 34455444 479999999999999999999999999998877 49999999999999999999999999999987
Q ss_pred CeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 83 GKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 83 g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
|+....+.|. +.++|..+|++++
T Consensus 79 ~~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 79 GKKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CCcceeecCCCCHHHHHHHHHhcC
Confidence 7667788888 8999999998753
No 36
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.90 E-value=1.5e-22 Score=111.24 Aligned_cols=95 Identities=18% Similarity=0.413 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 8 EFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 8 ~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
++++.+.+. .++++++|.||++||++|+.+.|.++++++.+. ++.+..+|++..+.++++|++.++|++++|++|
T Consensus 4 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 4 DLDDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred echhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 344555554 457899999999999999999999999998863 488999999999999999999999999999776
Q ss_pred eEEEEEcCC-CHHHHHHHHHHH
Q 044943 84 KEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 84 ~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
. ..++.|. +.+.+.+++++.
T Consensus 83 ~-~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 L-AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred C-ceeecCCCCHHHHHHHHHhh
Confidence 4 4667887 899999998875
No 37
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.90 E-value=3.8e-22 Score=115.77 Aligned_cols=85 Identities=27% Similarity=0.520 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCc------cce
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGS------VPT 76 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~------~P~ 76 (107)
+.+++++.+.. ..+++++|.||++||++|+.+.|.++++++.++ ++.++.+|+++.++++++|++.+ +||
T Consensus 34 ~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT 111 (152)
T cd02962 34 TPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPT 111 (152)
T ss_pred CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCE
Confidence 34566665543 356799999999999999999999999999876 49999999999999999999988 999
Q ss_pred EEEEeCCeEEEEEcC
Q 044943 77 FFFIKNGKEVDKVVG 91 (107)
Q Consensus 77 ~~~~~~g~~~~~~~g 91 (107)
+++|++|+.+.+..|
T Consensus 112 ~ilf~~Gk~v~r~~G 126 (152)
T cd02962 112 IILFQGGKEVARRPY 126 (152)
T ss_pred EEEEECCEEEEEEec
Confidence 999999999999987
No 38
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=3.3e-22 Score=122.32 Aligned_cols=101 Identities=25% Similarity=0.390 Sum_probs=87.9
Q ss_pred ChhhHHHHHHHHH-hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 5 SASEFETKLNAAT-RALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 5 ~~~~~~~~~~~~~-~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
+.++|++.++... ..+++++|.||++||++|+.+.|.++++++.+++ +.+..+|++..++++++|+|.++|++++|++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 4567777665421 2368999999999999999999999999999875 8899999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 83 GKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 83 g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
|+.+....|. +.+++.+++.+..
T Consensus 116 G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 116 GKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CEEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999888887 9999999988764
No 39
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.89 E-value=2.8e-22 Score=110.82 Aligned_cols=94 Identities=21% Similarity=0.464 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcC--chhHHhhcccCccceEEEEe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDE--ARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~ 81 (107)
+.+++++.+. +.+++++|.||++||++|+.+.|.+.++++.+++ +.++.+|++. ...++++|++.++|++++|+
T Consensus 6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 4556776664 4688999999999999999999999999998864 8899999998 88999999999999999998
Q ss_pred CCe-----EEEEEcCC-CHHHHHHHH
Q 044943 82 NGK-----EVDKVVGA-DKSALERKI 101 (107)
Q Consensus 82 ~g~-----~~~~~~g~-~~~~l~~~i 101 (107)
+|+ ....+.|. +.+.|.++|
T Consensus 83 ~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 83 PPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCCcccccccccccCccCHHHHHHHh
Confidence 775 45667788 888888876
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.89 E-value=3.9e-22 Score=109.33 Aligned_cols=92 Identities=29% Similarity=0.565 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcC--chhHHhhcccCccceEEEE
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDE--ARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~ 80 (107)
.+++++.+ +++++++|.||++||++|+.+.|.++++++.++ .+.++.+|++. .+.++++|++.++|+++++
T Consensus 7 ~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~ 82 (104)
T cd02997 7 DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYF 82 (104)
T ss_pred hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEE
Confidence 34555544 457799999999999999999999999988764 38899999988 8999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHH
Q 044943 81 KNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 81 ~~g~~~~~~~g~-~~~~l~~~i 101 (107)
++|+.+.++.|. +.+++.++|
T Consensus 83 ~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 83 ENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eCCCeeEEeCCCCCHHHHHhhC
Confidence 999989999998 888887764
No 41
>PTZ00062 glutaredoxin; Provisional
Probab=99.89 E-value=5.1e-22 Score=119.85 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=85.2
Q ss_pred CcccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 1 MGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 1 ~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
|+..+.+++.+.+.. ....++++||++||+.|+.+.+.+.+++++++++.|+.||.+ |+|.++|++++|
T Consensus 1 ~~~~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~ 69 (204)
T PTZ00062 1 MNFIKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFY 69 (204)
T ss_pred CCCCCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEE
Confidence 566777888877642 236789999999999999999999999999999999999977 999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHHHHhC
Q 044943 81 KNGKEVDKVVGADKSALERKIAQHAG 106 (107)
Q Consensus 81 ~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (107)
++|+.+.+..|.++.++...++++.+
T Consensus 70 ~~g~~i~r~~G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 70 QNSQLINSLEGCNTSTLVSFIRGWAQ 95 (204)
T ss_pred ECCEEEeeeeCCCHHHHHHHHHHHcC
Confidence 99999999999999999999988765
No 42
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=7e-22 Score=107.98 Aligned_cols=92 Identities=24% Similarity=0.452 Sum_probs=78.5
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
+.++|++.+ +++ ++|.||++||++|+.+.|.+.+++..+. ++.+..+|+++.+.++++|++.++|+++++++
T Consensus 7 ~~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02994 7 TDSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKD 80 (101)
T ss_pred ChhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCC
Confidence 355666543 233 6899999999999999999999998765 58999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHH
Q 044943 83 GKEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 83 g~~~~~~~g~-~~~~l~~~i~~ 103 (107)
|+. .++.|. +.++|.+++++
T Consensus 81 g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 81 GVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCE-EEecCCCCHHHHHHHHhC
Confidence 985 778888 89999988763
No 43
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.88 E-value=2.9e-21 Score=103.17 Aligned_cols=87 Identities=47% Similarity=0.904 Sum_probs=79.4
Q ss_pred HHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-C
Q 044943 15 AATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-D 93 (107)
Q Consensus 15 ~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~ 93 (107)
.+...+++++|+||++||++|+.+.+.+++++...+++.++.+|++....++++|++.++|+++++.+|+.+....|. +
T Consensus 5 ~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~ 84 (93)
T cd02947 5 ELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADP 84 (93)
T ss_pred HHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCC
Confidence 334456999999999999999999999999998877899999999999999999999999999999999999999998 7
Q ss_pred HHHHHHHH
Q 044943 94 KSALERKI 101 (107)
Q Consensus 94 ~~~l~~~i 101 (107)
.+.+.++|
T Consensus 85 ~~~l~~~i 92 (93)
T cd02947 85 KEELEEFL 92 (93)
T ss_pred HHHHHHHh
Confidence 78888876
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.87 E-value=5.4e-21 Score=107.63 Aligned_cols=89 Identities=21% Similarity=0.339 Sum_probs=72.0
Q ss_pred HHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch-----------hHHhhcc----cCccceE
Q 044943 13 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR-----------DVATRWN----IGSVPTF 77 (107)
Q Consensus 13 ~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~----v~~~P~~ 77 (107)
+.+..++++.++|+|+++|||+|+.+.|.+.+++++ .+..++.+|.+... ++.+.|+ +.++||+
T Consensus 16 ~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 16 ALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 333346788999999999999999999999999998 45778888877432 4556665 5569999
Q ss_pred EEEeCCeEEEEEcCC--CHHHHHHHHH
Q 044943 78 FFIKNGKEVDKVVGA--DKSALERKIA 102 (107)
Q Consensus 78 ~~~~~g~~~~~~~g~--~~~~l~~~i~ 102 (107)
+++++|+.+.+..|. +.++|.+++.
T Consensus 95 v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 95 VHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 999999999999894 7888888764
No 45
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.87 E-value=5.8e-21 Score=104.50 Aligned_cols=94 Identities=22% Similarity=0.420 Sum_probs=79.4
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
+.+++++.+. +.+++++|.||++||+.|+.+.|.+.++++.++ .+.++.+|++..+.++++|++.++|++++|++|
T Consensus 6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 4455665554 356779999999999999999999999998876 589999999999999999999999999999877
Q ss_pred -eEEEEEcCC-CHHHHHHHH
Q 044943 84 -KEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 84 -~~~~~~~g~-~~~~l~~~i 101 (107)
.....+.|. +.+.+.+|+
T Consensus 83 ~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 83 KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CcceeecCCCCCHHHHHHHh
Confidence 455567777 888888775
No 46
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.87 E-value=3.9e-21 Score=104.29 Aligned_cols=89 Identities=30% Similarity=0.544 Sum_probs=77.4
Q ss_pred HHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhC---CCeEEEEEECcCchhHHhhcccCccceEEEEeCC-eEEEE
Q 044943 13 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY---TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG-KEVDK 88 (107)
Q Consensus 13 ~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~~ 88 (107)
+..+..++++++|.||++||++|+.+.+.+.++++.+ .++.++.+|++....++++|++.++|+++++++| +...+
T Consensus 8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCccccc
Confidence 3444456679999999999999999999999999888 4699999999999999999999999999999766 78888
Q ss_pred EcCC-CHHHHHHHH
Q 044943 89 VVGA-DKSALERKI 101 (107)
Q Consensus 89 ~~g~-~~~~l~~~i 101 (107)
+.|. +.+++.+++
T Consensus 88 ~~g~~~~~~i~~~~ 101 (101)
T cd02961 88 YEGPRTLESLVEFI 101 (101)
T ss_pred CCCCcCHHHHHhhC
Confidence 8887 888887653
No 47
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.86 E-value=7.2e-21 Score=104.33 Aligned_cols=93 Identities=32% Similarity=0.631 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcC-chhHHhhcccCccceEEEEe
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDE-ARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~~~ 81 (107)
.+++++.+. +.+++++|.||++||++|+.+.+.+.++++.++ ++.++.+|++. .+.++++|++.++|++++|.
T Consensus 7 ~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~ 83 (105)
T cd02998 7 DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFP 83 (105)
T ss_pred hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEe
Confidence 455666442 356799999999999999999999999998875 59999999999 89999999999999999997
Q ss_pred CC-eEEEEEcCC-CHHHHHHHH
Q 044943 82 NG-KEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 82 ~g-~~~~~~~g~-~~~~l~~~i 101 (107)
+| +....+.|. +.+++.++|
T Consensus 84 ~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 84 KGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCCCccccCCccCHHHHHhhC
Confidence 65 566677787 888887764
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.86 E-value=2.2e-20 Score=112.28 Aligned_cols=95 Identities=20% Similarity=0.354 Sum_probs=78.2
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
+.++|...+..+ .++.+|+|+||++||+.|+.+.+.+.+++..|+.+.|+.+|.+.. ...|++.++||+++|++|+
T Consensus 88 s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~ 163 (192)
T cd02988 88 SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILVYRNGD 163 (192)
T ss_pred CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEEEECCE
Confidence 445666666542 235699999999999999999999999999999999999998753 5789999999999999999
Q ss_pred EEEEEcCC--------CHHHHHHHHHH
Q 044943 85 EVDKVVGA--------DKSALERKIAQ 103 (107)
Q Consensus 85 ~~~~~~g~--------~~~~l~~~i~~ 103 (107)
.+.+..|. +.+.|+..+.+
T Consensus 164 ~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 164 IVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99988774 45566665543
No 49
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.86 E-value=1.7e-20 Score=103.88 Aligned_cols=96 Identities=24% Similarity=0.395 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC-chhHHh-hcccCccceEEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE-ARDVAT-RWNIGSVPTFFFI 80 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~-~~~~~~-~~~v~~~P~~~~~ 80 (107)
+.++++..+.. .+.+++++|.||++||++|+++.|.+.++++.+. ++.++.+|++. ...++. .|++.++|++++|
T Consensus 7 ~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 7 SRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85 (109)
T ss_pred cHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence 34566655543 4578999999999999999999999999998886 48999999997 577776 5999999999999
Q ss_pred eCC-eEEEEEcC-C-CHHHHHHHH
Q 044943 81 KNG-KEVDKVVG-A-DKSALERKI 101 (107)
Q Consensus 81 ~~g-~~~~~~~g-~-~~~~l~~~i 101 (107)
.+| +....+.| . +.+.|..+|
T Consensus 86 ~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 86 PKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCCCceeccCCCCCHHHHHhhC
Confidence 654 56667777 3 777777653
No 50
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.85 E-value=1.2e-20 Score=103.38 Aligned_cols=93 Identities=28% Similarity=0.537 Sum_probs=77.1
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC---eEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK---VVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
+.+++++.+. +.+++++|.||++||++|+.+.+.+.++++.+++ +.++.+|++.. +++..+++.++|++++|+
T Consensus 6 ~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 6 VGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred chhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 3455666554 3568999999999999999999999999988754 89999999976 578889999999999998
Q ss_pred CCe--EEEEEcCC-CHHHHHHHH
Q 044943 82 NGK--EVDKVVGA-DKSALERKI 101 (107)
Q Consensus 82 ~g~--~~~~~~g~-~~~~l~~~i 101 (107)
+|+ ...++.|. +.+.+.++|
T Consensus 82 ~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHHHHHhhC
Confidence 776 56677887 888887764
No 51
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.84 E-value=5.4e-21 Score=106.98 Aligned_cols=104 Identities=19% Similarity=0.407 Sum_probs=77.7
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCch-hHHhhcccCc--cceE
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEAR-DVATRWNIGS--VPTF 77 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~v~~--~P~~ 77 (107)
+|.+. +++++++.+..++++++|.||++||++|+.+.+.+.+...... +..++.++++... ...+.|++.+ +|++
T Consensus 2 ~i~w~-~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~ 80 (117)
T cd02959 2 HIHWV-TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRI 80 (117)
T ss_pred cccce-eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceE
Confidence 35565 6899999999999999999999999999999999988665432 3456666666554 4567888876 9999
Q ss_pred EEEe-CCeEEEE---EcCC-CHHHHHHHHHHHhC
Q 044943 78 FFIK-NGKEVDK---VVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 78 ~~~~-~g~~~~~---~~g~-~~~~l~~~i~~~~~ 106 (107)
+++. +|+++.+ ..|. +.+.+.+.++..++
T Consensus 81 ~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 81 LFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred EEECCCCCCchhhccCCCCccccccCCCHHHHHh
Confidence 9994 8998874 4454 55555555555443
No 52
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.84 E-value=5.8e-20 Score=125.43 Aligned_cols=104 Identities=23% Similarity=0.448 Sum_probs=90.0
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCCCeEEEEEECcC----chhHHhhcccCcc
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKYTKVVFLKVDIDE----ARDVATRWNIGSV 74 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~ 74 (107)
++++.+++++.+..+.+++|+++|+||++||++|+.+.+.. .++.+.++++.++.+|.++ ..++.++|++.++
T Consensus 456 ~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 456 RIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 35678899999999888899999999999999999998875 6677777789999999875 3578899999999
Q ss_pred ceEEEEe-CCeE--EEEEcCC-CHHHHHHHHHHHh
Q 044943 75 PTFFFIK-NGKE--VDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 75 P~~~~~~-~g~~--~~~~~g~-~~~~l~~~i~~~~ 105 (107)
|++++|+ +|++ ..+..|. +.+++.+.+++..
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999995 7887 4678898 9999999998764
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=99.83 E-value=1.4e-19 Score=121.49 Aligned_cols=93 Identities=24% Similarity=0.520 Sum_probs=81.9
Q ss_pred HHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhC----CCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEE
Q 044943 13 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY----TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDK 88 (107)
Q Consensus 13 ~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 88 (107)
+..+.+++++++|.||++||++|+++.|.+.+++..+ +++.++.+|++....++++|++.++|++++|++|+.+ .
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~ 120 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV-N 120 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE-E
Confidence 3334457889999999999999999999998877554 3599999999999999999999999999999988877 7
Q ss_pred EcCC-CHHHHHHHHHHHhC
Q 044943 89 VVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 89 ~~g~-~~~~l~~~i~~~~~ 106 (107)
+.|. +.+.+.+++++.++
T Consensus 121 y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 121 YSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred ecCCCCHHHHHHHHHHhhC
Confidence 8888 99999999998875
No 54
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.83 E-value=1.9e-19 Score=100.54 Aligned_cols=97 Identities=18% Similarity=0.308 Sum_probs=76.4
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeC-------CCChhhhhhhHHHHHHHhhCC-CeEEEEEECcC-------chhHH
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTA-------TWCGPCRFISPLFTNLASKYT-KVVFLKVDIDE-------ARDVA 66 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~-------~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~-------~~~~~ 66 (107)
.+.+.+++.+.+.. .++++++|.||| +||++|+.+.|.++++...++ ++.++.+|+++ +.++.
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 46677788887765 357899999999 999999999999999999998 69999999976 45889
Q ss_pred hhcccC-ccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 044943 67 TRWNIG-SVPTFFFIKNGKEVDKVVGADKSALERK 100 (107)
Q Consensus 67 ~~~~v~-~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 100 (107)
..|++. ++||++++++|+.+....=.+.+.+..+
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMF 117 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHh
Confidence 999998 9999999977653332211144444443
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.82 E-value=2.3e-19 Score=119.74 Aligned_cols=98 Identities=24% Similarity=0.617 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
+.+++++.+ +++++++|.||++||++|+.+.|.+.++++.+. ++.++.+|++..++++++|++.++|+++++
T Consensus 7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 82 (462)
T TIGR01130 7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF 82 (462)
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence 344555544 568899999999999999999999998877643 499999999999999999999999999999
Q ss_pred eCCeE-EEEEcCC-CHHHHHHHHHHHhC
Q 044943 81 KNGKE-VDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 81 ~~g~~-~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
++|+. +..+.|. +.+.+.+++.+.++
T Consensus 83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 83 RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 99887 7788888 99999999988764
No 56
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.5e-19 Score=119.88 Aligned_cols=92 Identities=24% Similarity=0.577 Sum_probs=82.7
Q ss_pred HHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEc
Q 044943 15 AATRALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVV 90 (107)
Q Consensus 15 ~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 90 (107)
.....+..++|.||||||++|+++.|.+.+.+.... .+.++.||+....+++.+|+|.++||+-+|++|+....+.
T Consensus 37 ~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~ 116 (493)
T KOG0190|consen 37 ETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYN 116 (493)
T ss_pred HHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceecc
Confidence 334679999999999999999999999988777653 6999999999999999999999999999999999877788
Q ss_pred CC-CHHHHHHHHHHHhC
Q 044943 91 GA-DKSALERKIAQHAG 106 (107)
Q Consensus 91 g~-~~~~l~~~i~~~~~ 106 (107)
|. ..+.+..|+++..+
T Consensus 117 G~r~adgIv~wl~kq~g 133 (493)
T KOG0190|consen 117 GPREADGIVKWLKKQSG 133 (493)
T ss_pred CcccHHHHHHHHHhccC
Confidence 88 99999999998765
No 57
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.81 E-value=1.1e-18 Score=98.29 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhh-CCCeEEEEEECcCchhHHhh--------cccCccceE
Q 044943 10 ETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASK-YTKVVFLKVDIDEARDVATR--------WNIGSVPTF 77 (107)
Q Consensus 10 ~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~-~~~~~~~~i~~~~~~~~~~~--------~~v~~~P~~ 77 (107)
++++..+.+++|+++|.|+++||++|+.+.... .++.+. ..++.++.+|.++.+++.+. |++.++|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 346777888999999999999999999998743 355555 35799999999888777653 588999999
Q ss_pred EEE-eCCeEEEEEcCCCH------HHHHHHHHHH
Q 044943 78 FFI-KNGKEVDKVVGADK------SALERKIAQH 104 (107)
Q Consensus 78 ~~~-~~g~~~~~~~g~~~------~~l~~~i~~~ 104 (107)
+++ .+|+++....+..+ ..+.+.++++
T Consensus 85 vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 85 VFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 999 58998877665522 2555555544
No 58
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=2.3e-19 Score=100.02 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=65.1
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECc--CchhHHhhcccCccceEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDID--EARDVATRWNIGSVPTFF 78 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~--~~~~~~~~~~v~~~P~~~ 78 (107)
+.+++++.+. ..+++++|.||++||+.|+.+.+.++++++.+. .+.+..+|++ ....++++|++.++|+++
T Consensus 7 ~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 7 DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 4566777665 346899999999999999999999999988654 3888899975 467899999999999999
Q ss_pred EEeCCe
Q 044943 79 FIKNGK 84 (107)
Q Consensus 79 ~~~~g~ 84 (107)
+|++|+
T Consensus 84 lf~~~~ 89 (114)
T cd02992 84 YFPPFS 89 (114)
T ss_pred EECCCC
Confidence 998776
No 59
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.79 E-value=3.2e-18 Score=90.12 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=69.4
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHH
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERK 100 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~ 100 (107)
.+..||++||++|+.+.+.+++++..++ .+.+..+|.++.+++.++|++.++|++++ +|+. +..|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 3678999999999999999999998875 48999999999999999999999999986 6763 67788 89999999
Q ss_pred HHHHh
Q 044943 101 IAQHA 105 (107)
Q Consensus 101 i~~~~ 105 (107)
+.+.+
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 88753
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=1.4e-18 Score=116.73 Aligned_cols=98 Identities=22% Similarity=0.503 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
.+++++.+ .+.+++++|.||++||++|+.+.|.+++++..+. .+.++.+|++.+...++.|++.++|++++|++
T Consensus 364 ~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~ 440 (477)
T PTZ00102 364 GNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKA 440 (477)
T ss_pred ccchHHHH---hcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEEC
Confidence 34455544 3578999999999999999999999999988765 48899999999999999999999999999986
Q ss_pred CeEE-EEEcCC-CHHHHHHHHHHHhC
Q 044943 83 GKEV-DKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 83 g~~~-~~~~g~-~~~~l~~~i~~~~~ 106 (107)
|+.+ .++.|. +.+.+.++|+++..
T Consensus 441 ~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 441 GERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred CCcceeEecCcCCHHHHHHHHHHcCC
Confidence 6544 578898 99999999998764
No 61
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.79 E-value=4.5e-18 Score=104.17 Aligned_cols=97 Identities=19% Similarity=0.321 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhCCcEEEEEEeC---CCChhhhhhhHHHHHHHhhCCCeE--EEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 8 EFETKLNAATRALRLVILYFTA---TWCGPCRFISPLFTNLASKYTKVV--FLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 8 ~~~~~~~~~~~~~k~~lv~f~~---~~C~~C~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
++.+.+.+-.+. ...++.|++ +||++|+.+.|.+.++++.++++. ++.+|.+..++++++|++.++||+++|++
T Consensus 8 ~~~~~~~~~~~~-~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~ 86 (215)
T TIGR02187 8 ILKELFLKELKN-PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE 86 (215)
T ss_pred HHHHHHHHhcCC-CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC
Confidence 344442332333 444556777 999999999999999999997654 56666669999999999999999999999
Q ss_pred CeEEE-EEcCC-CHHHHHHHHHHHh
Q 044943 83 GKEVD-KVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 83 g~~~~-~~~g~-~~~~l~~~i~~~~ 105 (107)
|+.+. ++.|. +.+++.++|+.++
T Consensus 87 g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 87 GKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred CeeeEEEEeecCCHHHHHHHHHHHH
Confidence 99874 88898 8889999888765
No 62
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.78 E-value=8.1e-19 Score=97.39 Aligned_cols=85 Identities=22% Similarity=0.480 Sum_probs=65.2
Q ss_pred HhCCcEEEEEEeCCCChhhhhhhHHHHHH---HhhCC-CeEEEEEECcCc--------------------hhHHhhcccC
Q 044943 17 TRALRLVILYFTATWCGPCRFISPLFTNL---ASKYT-KVVFLKVDIDEA--------------------RDVATRWNIG 72 (107)
Q Consensus 17 ~~~~k~~lv~f~~~~C~~C~~~~~~~~~~---~~~~~-~~~~~~i~~~~~--------------------~~~~~~~~v~ 72 (107)
..++++++++||++||++|+++.+.+.+. ..... ++.++.++.+.. .++.+.|++.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 35789999999999999999999998754 34332 477788877643 3578899999
Q ss_pred ccceEEEEe-CCeEEEEEcCC-CHHHHHHHH
Q 044943 73 SVPTFFFIK-NGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 73 ~~P~~~~~~-~g~~~~~~~g~-~~~~l~~~i 101 (107)
++|+++++. +|+.+.+..|. ++++|.+++
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999994 89999999999 999998764
No 63
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.78 E-value=3.3e-18 Score=99.55 Aligned_cols=91 Identities=15% Similarity=0.365 Sum_probs=69.5
Q ss_pred HHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc------------hhHH-hhc---ccCccceE
Q 044943 14 NAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA------------RDVA-TRW---NIGSVPTF 77 (107)
Q Consensus 14 ~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~~-~~~---~v~~~P~~ 77 (107)
......+++.+|+||++||++|++.+|.++++++++ ++.++.++.+.. .... ..| ++.++|++
T Consensus 44 G~~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt 122 (153)
T TIGR02738 44 GRHANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPAT 122 (153)
T ss_pred chhhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeE
Confidence 333445778899999999999999999999999988 466666665532 2222 345 78999999
Q ss_pred EEEe-CCe-EEEEEcCC-CHHHHHHHHHHHh
Q 044943 78 FFIK-NGK-EVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 78 ~~~~-~g~-~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
+++. +|+ .+....|. +.+++.+.|++++
T Consensus 123 ~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 123 FLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 9994 555 46678898 9999999888764
No 64
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=8.4e-18 Score=111.85 Aligned_cols=99 Identities=21% Similarity=0.314 Sum_probs=79.7
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCch-hH-HhhcccCccceEEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEAR-DV-ATRWNIGSVPTFFFI 80 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~-~~-~~~~~v~~~P~~~~~ 80 (107)
+.++|++.+.. .+.+++++|.||++||++|+.+.|.++++++.+. ++.++.+|++... .+ ++.|+|.++||+++|
T Consensus 357 ~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~F 435 (463)
T TIGR00424 357 SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFF 435 (463)
T ss_pred CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEE
Confidence 45567776642 3579999999999999999999999999999886 3889999998653 34 468999999999999
Q ss_pred eCCe-EEEEEc-CC-CHHHHHHHHHHH
Q 044943 81 KNGK-EVDKVV-GA-DKSALERKIAQH 104 (107)
Q Consensus 81 ~~g~-~~~~~~-g~-~~~~l~~~i~~~ 104 (107)
++|. ....+. |. +.+.|..+|+.+
T Consensus 436 k~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 436 PKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 8775 333454 45 899999998764
No 65
>PLN02309 5'-adenylylsulfate reductase
Probab=99.77 E-value=1e-17 Score=111.37 Aligned_cols=99 Identities=21% Similarity=0.334 Sum_probs=80.9
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECc-CchhHHh-hcccCccceEEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDID-EARDVAT-RWNIGSVPTFFFI 80 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~-~~~~~~~-~~~v~~~P~~~~~ 80 (107)
+.+++++.+.. .+.+++++|.||++||++|+.+.|.+.++++.+. ++.++.+|++ ....++. .|+|.++||+++|
T Consensus 351 t~~nfe~ll~~-~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f 429 (457)
T PLN02309 351 SRAGIENLLKL-ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLF 429 (457)
T ss_pred CHHHHHHHHHh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEE
Confidence 45566666543 3679999999999999999999999999999875 4999999999 7778886 6999999999999
Q ss_pred eCCe-EEEEEc-CC-CHHHHHHHHHHH
Q 044943 81 KNGK-EVDKVV-GA-DKSALERKIAQH 104 (107)
Q Consensus 81 ~~g~-~~~~~~-g~-~~~~l~~~i~~~ 104 (107)
++|. ....+. |. +.+.|..||++.
T Consensus 430 ~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 430 PKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 7664 333454 44 889999999864
No 66
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.76 E-value=1.3e-17 Score=112.27 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=73.8
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEE----------------------------CcCchhHHh
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVD----------------------------IDEARDVAT 67 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~----------------------------~~~~~~~~~ 67 (107)
+++|+++|+||++||++|+.++|.++++.++++ ++.++.|. .|....+.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 378999999999999999999999999999876 56666553 234556888
Q ss_pred hcccCccceEEEE-eCCeEEEEEcCC-CHHHHHHHHHH
Q 044943 68 RWNIGSVPTFFFI-KNGKEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 68 ~~~v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~ 103 (107)
.|++.++|+++++ ++|+++.+..|. +.+++.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999777 699999999999 99999999884
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=1.8e-17 Score=101.55 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=71.5
Q ss_pred CcE-EEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHH
Q 044943 20 LRL-VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSAL 97 (107)
Q Consensus 20 ~k~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 97 (107)
.++ .++.||++||++|+.+.+.+++++..++++.+..+|.+..+++..+|++.++|+++++++|+. +.|. +.+++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 444 455599999999999999999999998889999999999999999999999999999987763 7788 88899
Q ss_pred HHHHHH
Q 044943 98 ERKIAQ 103 (107)
Q Consensus 98 ~~~i~~ 103 (107)
.+++.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 998875
No 68
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.76 E-value=3.6e-17 Score=91.18 Aligned_cols=99 Identities=14% Similarity=0.261 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCC-CeEEEEEECc--CchhHHhhcccCccceEEEE
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKYT-KVVFLKVDID--EARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~i~~~--~~~~~~~~~~v~~~P~~~~~ 80 (107)
.+++++++.+.+++|+++|+|+++||++|+.+...+ .++.+... +..++.+|.+ +...+...|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 578899999999999999999999999999997643 33444332 5777888876 45678999999999999999
Q ss_pred e--CCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 81 K--NGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 81 ~--~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
. +|+.+.+..|. +++++...++++.
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 4 79999999999 9999999998765
No 69
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.76 E-value=3.2e-17 Score=98.39 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=71.3
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch-----------------------hHHhhcccCcc
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR-----------------------DVATRWNIGSV 74 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~~v~~~ 74 (107)
..+++++|+||++||++|++.+|.+.++.+. ++.++.++.++.+ .+...|++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 3689999999999999999999999998764 6778888764322 24457899999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 75 PTFFFI-KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 75 P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
|+++++ ++|+++.+..|. +.+++++.|+.++
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 988888 699999999998 9999988888765
No 70
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.76 E-value=3.4e-17 Score=97.31 Aligned_cols=88 Identities=20% Similarity=0.381 Sum_probs=73.0
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc-----------------------CchhHHhhcccCcc
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID-----------------------EARDVATRWNIGSV 74 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------~~~~~~~~~~v~~~ 74 (107)
.++++++|+||++||+.|+.+.|.++++.+. ++.++.++.+ ....+.+.|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 4689999999999999999999999998765 4666666642 22355677899999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHHHHHhCC
Q 044943 75 PTFFFI-KNGKEVDKVVGA-DKSALERKIAQHAGQ 107 (107)
Q Consensus 75 P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 107 (107)
|+++++ ++|+++.+..|. +.+++.+++.+++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~~ 173 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAMEK 173 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhhC
Confidence 987777 689999999998 999999999998864
No 71
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.76 E-value=1.1e-17 Score=91.51 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=77.2
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccC--ccceEEEEeC--CeEEEEEcCC-C
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIG--SVPTFFFIKN--GKEVDKVVGA-D 93 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~--~~P~~~~~~~--g~~~~~~~g~-~ 93 (107)
++++++.|+++||+.|+.+.+.+.++++++.+ +.|+.+|.++.+.+++.|++. ++|+++++++ |+......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 78999999999999999999999999999965 999999999999999999999 9999999976 6666666666 8
Q ss_pred HHHHHHHHHHH
Q 044943 94 KSALERKIAQH 104 (107)
Q Consensus 94 ~~~l~~~i~~~ 104 (107)
.+.+.++++++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 72
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.75 E-value=1e-16 Score=101.03 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=71.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-----------chhHHhhcccCccceEEEEeC-Ce-E
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-----------ARDVATRWNIGSVPTFFFIKN-GK-E 85 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~v~~~P~~~~~~~-g~-~ 85 (107)
.++++||+||++||++|+.+.|.+++++++++ +.++.|++|. +..+.++|||.++|++++++. |+ +
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 58899999999999999999999999999984 6777777654 346789999999999999964 44 4
Q ss_pred EEEEcCC-CHHHHHHHHHHHh
Q 044943 86 VDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 86 ~~~~~g~-~~~~l~~~i~~~~ 105 (107)
.....|. +.++|.+.|....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 4456687 9999999887664
No 73
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=2.1e-17 Score=91.71 Aligned_cols=93 Identities=13% Similarity=0.278 Sum_probs=71.2
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeC--CCCh---hhhhhhHHHHHHHhhCCCeEEEEEECc-----CchhHHhhcccC--
Q 044943 5 SASEFETKLNAATRALRLVILYFTA--TWCG---PCRFISPLFTNLASKYTKVVFLKVDID-----EARDVATRWNIG-- 72 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~--~~C~---~C~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~v~-- 72 (107)
+..+|+..+ .+++.+||.||+ |||+ .|+.+.|.+.+-+. .+.+..||++ ++.+++++|+|.
T Consensus 7 ~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 7 DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCcC
Confidence 445566655 578999999999 7777 66666665554333 3889999994 568899999999
Q ss_pred ccceEEEEeCCe--EEEEEcC--CCHHHHHHHHHHH
Q 044943 73 SVPTFFFIKNGK--EVDKVVG--ADKSALERKIAQH 104 (107)
Q Consensus 73 ~~P~~~~~~~g~--~~~~~~g--~~~~~l~~~i~~~ 104 (107)
++||+.+|++|. ....+.| .+.+.|.++|++.
T Consensus 80 gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999884 3345666 3889999999875
No 74
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.74 E-value=2.4e-17 Score=93.02 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=66.1
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhC-CCeEEEEEECcCchhHHhhcccCccceE
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTF 77 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~-~~~~~~~i~~~~~~~~~~~~~v~~~P~~ 77 (107)
+|.+..++++++..+.+++|+++|+|+++||++|+.+.... .++.+.. .++..+.++.+....-....+ .++|++
T Consensus 5 ~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPti 83 (130)
T cd02960 5 DIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRI 83 (130)
T ss_pred cccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeE
Confidence 46777799999999999999999999999999999999765 2333333 246666666552211111233 689999
Q ss_pred EEE-eCCeEEEEEcCC
Q 044943 78 FFI-KNGKEVDKVVGA 92 (107)
Q Consensus 78 ~~~-~~g~~~~~~~g~ 92 (107)
+|+ .+|+++.+..|.
T Consensus 84 vFld~~g~vi~~i~Gy 99 (130)
T cd02960 84 MFVDPSLTVRADITGR 99 (130)
T ss_pred EEECCCCCCccccccc
Confidence 999 588888877774
No 75
>PHA02125 thioredoxin-like protein
Probab=99.73 E-value=7.6e-17 Score=83.68 Aligned_cols=70 Identities=30% Similarity=0.741 Sum_probs=59.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC--CHHHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA--DKSALERKI 101 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~i 101 (107)
++.||++||++|+.+.|.+.++. +.++.+|.+...+++++|++.++||++ +|+.+.+..|. +..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 78999999999999999997653 468899999999999999999999987 68888888897 335665543
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.73 E-value=4.7e-17 Score=92.17 Aligned_cols=79 Identities=27% Similarity=0.421 Sum_probs=65.3
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC-----------------------cCchhHHhhcccCcc
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI-----------------------DEARDVATRWNIGSV 74 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~-----------------------~~~~~~~~~~~v~~~ 74 (107)
-++++++|+||++||+.|+.+.|.++++.+.+ ++.++.++. |....+++.|++.++
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 36899999999999999999999999998886 477777763 334467788999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHH
Q 044943 75 PTFFFI-KNGKEVDKVVGA-DKSAL 97 (107)
Q Consensus 75 P~~~~~-~~g~~~~~~~g~-~~~~l 97 (107)
|+++++ ++|+++.+..|. +.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 977777 699999999998 66543
No 77
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.71 E-value=4.8e-16 Score=83.04 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=68.4
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEE
Q 044943 10 ETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKV 89 (107)
Q Consensus 10 ~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 89 (107)
.+.+..+ ++..-+..|+++||++|..+.+.++++++.++++.+..+|.++.++++.+|++.++|++++ +|+.+..
T Consensus 4 ~~~~~~l--~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~- 78 (89)
T cd03026 4 LEQIRRL--NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF- 78 (89)
T ss_pred HHHHHhc--CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe-
Confidence 3444432 4555688899999999999999999999999999999999999999999999999999975 7887775
Q ss_pred cCC-CHHHH
Q 044943 90 VGA-DKSAL 97 (107)
Q Consensus 90 ~g~-~~~~l 97 (107)
|. +.+++
T Consensus 79 -G~~~~~e~ 86 (89)
T cd03026 79 -GRMTLEEI 86 (89)
T ss_pred -CCCCHHHH
Confidence 65 65554
No 78
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.70 E-value=7.8e-17 Score=101.24 Aligned_cols=98 Identities=20% Similarity=0.425 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
.++++.+... +.....+|.||+|||.+|+++.|.|.++--+++ .+++..+|+...+.++.+|+++++||+.++++
T Consensus 31 eDLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg 109 (468)
T KOG4277|consen 31 EDLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG 109 (468)
T ss_pred hhhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC
Confidence 4566666654 456788999999999999999999999877665 38899999999999999999999999999998
Q ss_pred CeEEEEEcCCCHHHHHHHHHHHh
Q 044943 83 GKEVDKVVGADKSALERKIAQHA 105 (107)
Q Consensus 83 g~~~~~~~g~~~~~l~~~i~~~~ 105 (107)
|..+..-.|.+.+.+.++-.+..
T Consensus 110 d~a~dYRG~R~Kd~iieFAhR~a 132 (468)
T KOG4277|consen 110 DHAIDYRGGREKDAIIEFAHRCA 132 (468)
T ss_pred CeeeecCCCccHHHHHHHHHhcc
Confidence 87776554558888888876654
No 79
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.70 E-value=2.7e-16 Score=90.74 Aligned_cols=70 Identities=19% Similarity=0.535 Sum_probs=57.2
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---------CeEEEEEECcCc-------------------------hh
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT---------KVVFLKVDIDEA-------------------------RD 64 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---------~~~~~~i~~~~~-------------------------~~ 64 (107)
++|+++|+|||+||++|+..+|.|.++.+.+. ++.++.|+.+.. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 68999999999999999999999998765332 478888876532 14
Q ss_pred HHhhcccCccceEEEE-eCCeEEEE
Q 044943 65 VATRWNIGSVPTFFFI-KNGKEVDK 88 (107)
Q Consensus 65 ~~~~~~v~~~P~~~~~-~~g~~~~~ 88 (107)
+.+.|++.++|+++++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 6678899999999999 58888876
No 80
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.69 E-value=1e-15 Score=90.74 Aligned_cols=86 Identities=35% Similarity=0.652 Sum_probs=74.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC----------------------chhHHhhcccCcc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE----------------------ARDVATRWNIGSV 74 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~----------------------~~~~~~~~~v~~~ 74 (107)
.+++++|+||++||+.|+...+.+.++.++++ ++.++.++.+. ...+.+.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 57999999999999999999999999998876 38888888653 3467789999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHHHHH
Q 044943 75 PTFFFI-KNGKEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 75 P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
|+++++ ++|+++....|. +.+++.+.++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999988 589999888898 999999988765
No 81
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.69 E-value=5e-16 Score=78.87 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=55.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
++.|+++||++|+.+.+.+++++..++++.+..+|.++.+++.++|++.++|++++ +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 67899999999999999999999888889999999999999999999999999866 555443
No 82
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.68 E-value=5.5e-16 Score=103.60 Aligned_cols=95 Identities=29% Similarity=0.577 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC----eEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK----VVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
.++++.+. +.++.++|.||++||++|+.+.|.++++++.+.+ +.++.+|++.+. +.. +++.++|++++|++
T Consensus 354 ~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~ 428 (462)
T TIGR01130 354 KNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPA 428 (462)
T ss_pred cCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeC
Confidence 44555443 4689999999999999999999999999988764 889999998664 333 99999999999987
Q ss_pred CeEE--EEEcCC-CHHHHHHHHHHHhC
Q 044943 83 GKEV--DKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 83 g~~~--~~~~g~-~~~~l~~~i~~~~~ 106 (107)
|... ..+.|. +.+.+.++|.+...
T Consensus 429 ~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 429 GKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred CCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 7643 466777 99999999987653
No 83
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.67 E-value=1.5e-15 Score=78.93 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=56.8
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC--CHHHHHHHH
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA--DKSALERKI 101 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~i 101 (107)
|.||++||++|+.+.|.+++++++++. +.++.+| ..+.+.+|++.++|++++ +|+.+ ..|. +.+++.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 789999999999999999999999863 7777776 344477899999999988 88877 5564 556777665
No 84
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.67 E-value=8.8e-16 Score=82.88 Aligned_cols=66 Identities=35% Similarity=0.747 Sum_probs=54.3
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcCc-------------------------hhHHhhccc
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDEA-------------------------RDVATRWNI 71 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~~-------------------------~~~~~~~~v 71 (107)
||+++|+||++||+.|+...|.+.++.+.++ ++.++.|+.+.. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999998 699998887643 246778899
Q ss_pred CccceEEEEe-CCeE
Q 044943 72 GSVPTFFFIK-NGKE 85 (107)
Q Consensus 72 ~~~P~~~~~~-~g~~ 85 (107)
.++|+++++. +|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 9999999994 6653
No 85
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.67 E-value=5.7e-15 Score=83.49 Aligned_cols=90 Identities=8% Similarity=0.086 Sum_probs=80.7
Q ss_pred HhCCcEEEEEEeCC--CChhhhhhhHHHHHHHhhCC-C-eEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC
Q 044943 17 TRALRLVILYFTAT--WCGPCRFISPLFTNLASKYT-K-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA 92 (107)
Q Consensus 17 ~~~~k~~lv~f~~~--~C~~C~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 92 (107)
...+...+++|.++ .++.+....-.+.+++++++ . +.++.+|.+.++.++.+|||.++||+++|++|+.+.+..|.
T Consensus 31 ~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~ 110 (132)
T PRK11509 31 LTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGI 110 (132)
T ss_pred HhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCc
Confidence 34566677777666 57899999999999999998 3 89999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHhC
Q 044943 93 -DKSALERKIAQHAG 106 (107)
Q Consensus 93 -~~~~l~~~i~~~~~ 106 (107)
+.+++.++|+++++
T Consensus 111 ~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 111 HPWAELINLMRGLVE 125 (132)
T ss_pred CCHHHHHHHHHHHhc
Confidence 99999999999875
No 86
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=1.4e-15 Score=109.82 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=74.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC--eEEEEEEC---------------------------cCchhHHhhc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTK--VVFLKVDI---------------------------DEARDVATRW 69 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~i~~---------------------------~~~~~~~~~~ 69 (107)
++|+++|+||++||++|+...|.++++.+++++ +.++.+.. +....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999874 77777742 1234567789
Q ss_pred ccCccceEEEE-eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 70 NIGSVPTFFFI-KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 70 ~v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
++.++|+++++ ++|+++.+..|. ..+++.+++++++
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 99999999999 699999999998 8899999998765
No 87
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.67 E-value=2.4e-15 Score=89.23 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=67.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc-------------hhHHhhccc--CccceEEEE-eCCeEE-
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA-------------RDVATRWNI--GSVPTFFFI-KNGKEV- 86 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------~~~~~~~~v--~~~P~~~~~-~~g~~~- 86 (107)
+|+||++||++|++..|.++++++++ ++.++.++.+.. ..+...|++ .++|+++++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 78899999999999999999999998 577777766532 235667885 699999999 688886
Q ss_pred EEEcCC-CHHHHHHHHHHHhC
Q 044943 87 DKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 87 ~~~~g~-~~~~l~~~i~~~~~ 106 (107)
....|. +.+++.+.|+.++.
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 578899 99999998887763
No 88
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.66 E-value=1.2e-15 Score=86.87 Aligned_cols=71 Identities=25% Similarity=0.577 Sum_probs=57.7
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCc------------------------hhHHhhcc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEA------------------------RDVATRWN 70 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~------------------------~~~~~~~~ 70 (107)
.+++++|+||++||+.|+.+.|.+.++.+++. ++.++.++.+.. ..+.+.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 68999999999999999999999988876653 567777766533 35677899
Q ss_pred cCccceEEEEe-CCeEEEEE
Q 044943 71 IGSVPTFFFIK-NGKEVDKV 89 (107)
Q Consensus 71 v~~~P~~~~~~-~g~~~~~~ 89 (107)
+.++|+++++. +|+++.+.
T Consensus 97 v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 97 IEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCCEEEEECCCCCEEccc
Confidence 99999999995 88877653
No 89
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.66 E-value=7.7e-16 Score=81.18 Aligned_cols=76 Identities=29% Similarity=0.597 Sum_probs=60.5
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHh-hCCCeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLAS-KYTKVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~-~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
+..+++++++.+.+++|+++|+|+++||++|+.+...+ .++.+ ...++..+.+|.+...... .+...++|+++++
T Consensus 2 W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~l 80 (82)
T PF13899_consen 2 WQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFL 80 (82)
T ss_dssp EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEE
T ss_pred hhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEe
Confidence 45689999999999999999999999999999999776 34444 2347999999998666544 3333779999998
Q ss_pred e
Q 044943 81 K 81 (107)
Q Consensus 81 ~ 81 (107)
.
T Consensus 81 d 81 (82)
T PF13899_consen 81 D 81 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 90
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.66 E-value=5.5e-16 Score=97.17 Aligned_cols=92 Identities=29% Similarity=0.539 Sum_probs=80.3
Q ss_pred HHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHh----hCC--CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEE-
Q 044943 15 AATRALRLVILYFTATWCGPCRFISPLFTNLAS----KYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVD- 87 (107)
Q Consensus 15 ~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~----~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~- 87 (107)
...+.+..++|.|||+||+.++.++|.+.+.++ ++| .+.+..|||+....++.+|.|..+||+-++++|....
T Consensus 8 ~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~r 87 (375)
T KOG0912|consen 8 SILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKR 87 (375)
T ss_pred HhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhh
Confidence 344568999999999999999999999977654 556 3999999999999999999999999999999999877
Q ss_pred EEcCC-CHHHHHHHHHHHhC
Q 044943 88 KVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 88 ~~~g~-~~~~l~~~i~~~~~ 106 (107)
.+.|. +-+.|.++|++.++
T Consensus 88 EYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 88 EYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred hhccchhHHHHHHHHHHHhc
Confidence 67787 88999999987654
No 91
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.64 E-value=2.1e-15 Score=86.03 Aligned_cols=72 Identities=26% Similarity=0.560 Sum_probs=57.6
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCc-------------------------hhHHhh
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEA-------------------------RDVATR 68 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~-------------------------~~~~~~ 68 (107)
-+||+++|+||++||+.|+..+|.++++.+.+. ++.++.++.+.. ..+.+.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 368999999999999999999999998877654 467777766543 235567
Q ss_pred cccCccceEEEEe-CCeEEEEE
Q 044943 69 WNIGSVPTFFFIK-NGKEVDKV 89 (107)
Q Consensus 69 ~~v~~~P~~~~~~-~g~~~~~~ 89 (107)
|++.++|+++++. +|+++.+.
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred cCCCCCCEEEEECCCCCEEchh
Confidence 9999999999994 78877654
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.64 E-value=4.3e-15 Score=81.92 Aligned_cols=73 Identities=32% Similarity=0.681 Sum_probs=65.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhC--CCeEEEEEECcCc-----------------------hhHHhhcccCc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKY--TKVVFLKVDIDEA-----------------------RDVATRWNIGS 73 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~i~~~~~-----------------------~~~~~~~~v~~ 73 (107)
.++++++.||++||+.|+...+.+.++...+ +++.++.++.+.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4899999999999999999999999999998 5799999999875 67889999999
Q ss_pred cceEEEE-eCCeEEEEEcC
Q 044943 74 VPTFFFI-KNGKEVDKVVG 91 (107)
Q Consensus 74 ~P~~~~~-~~g~~~~~~~g 91 (107)
+|+++++ ++|+++.+..|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999999 58888887765
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.64 E-value=3.8e-15 Score=83.82 Aligned_cols=82 Identities=30% Similarity=0.590 Sum_probs=64.4
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC---------------------cCchhHHhhcccCccce
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI---------------------DEARDVATRWNIGSVPT 76 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~---------------------~~~~~~~~~~~v~~~P~ 76 (107)
..+++++|.||++||+.|+.+.+.+.++.+.+. +..+.+|- +....+++.|++.++|+
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 356999999999999999999999999887743 22222221 23457889999999999
Q ss_pred EEEEeCCeEEEEEcCC-CHHHHHHH
Q 044943 77 FFFIKNGKEVDKVVGA-DKSALERK 100 (107)
Q Consensus 77 ~~~~~~g~~~~~~~g~-~~~~l~~~ 100 (107)
++++.++++.....|. +++++.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9999654488889998 88888764
No 94
>smart00594 UAS UAS domain.
Probab=99.62 E-value=1.7e-14 Score=81.28 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCC-CeEEEEEECc--CchhHHhhcccCccceEEE
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKYT-KVVFLKVDID--EARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~i~~~--~~~~~~~~~~v~~~P~~~~ 79 (107)
..+++++++.+.+++|+++|+|+++||++|+.+...+ .++.+... ++.+..+|.+ +..+++.+|++.++|++++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 4578999999999999999999999999999988653 33333332 5777777765 4567899999999999999
Q ss_pred E-eCC-----eEEEEEcCC-CHHHHHHHH
Q 044943 80 I-KNG-----KEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 80 ~-~~g-----~~~~~~~g~-~~~~l~~~i 101 (107)
+ .+| ..+.+..|. +++++...+
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9 344 357788898 889888765
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-14 Score=95.88 Aligned_cols=91 Identities=24% Similarity=0.458 Sum_probs=78.7
Q ss_pred HHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-C
Q 044943 16 ATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-D 93 (107)
Q Consensus 16 ~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~ 93 (107)
....+++.+|.||++||++|+.+.|.+.+++..+.+ +.+..+|++.+.+++++|++.++||+.++..|.....+.|. +
T Consensus 43 ~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~ 122 (383)
T KOG0191|consen 43 LLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRN 122 (383)
T ss_pred hhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCccc
Confidence 346789999999999999999999999999998887 89999999999999999999999999999888445555566 7
Q ss_pred HHHHHHHHHHHhC
Q 044943 94 KSALERKIAQHAG 106 (107)
Q Consensus 94 ~~~l~~~i~~~~~ 106 (107)
.+.+.+++...++
T Consensus 123 ~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 123 AESLAEFLIKELE 135 (383)
T ss_pred HHHHHHHHHHhhc
Confidence 8888887766543
No 96
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.59 E-value=2.9e-14 Score=80.67 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=61.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECc---------------------------CchhHHhhc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDID---------------------------EARDVATRW 69 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~---------------------------~~~~~~~~~ 69 (107)
++++++|+||++||+.|.+..|.++++.+++. ++.++.++.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 68999999999999999999999999999987 4777777531 123466678
Q ss_pred ccCccceEEEE-eCCeEEEEEcCC
Q 044943 70 NIGSVPTFFFI-KNGKEVDKVVGA 92 (107)
Q Consensus 70 ~v~~~P~~~~~-~~g~~~~~~~g~ 92 (107)
++.++|+++++ ++|+++....|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 589999888774
No 97
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.1e-15 Score=99.13 Aligned_cols=94 Identities=27% Similarity=0.517 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcCchhHHhhcccCccceEEEEeCC
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 83 (107)
.++++.+ .+.+|-|||.||+|||++|+++.|.+++|++.+. ++.++++|...+..- ...+.++||+.+++.|
T Consensus 374 knfd~iv---~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~--~~~~~~fPTI~~~pag 448 (493)
T KOG0190|consen 374 KNFDDIV---LDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP--SLKVDGFPTILFFPAG 448 (493)
T ss_pred cCHHHHh---hccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc--cccccccceEEEecCC
Confidence 3455555 3689999999999999999999999999999876 599999998766532 3356679999999755
Q ss_pred e--EEEEEcCC-CHHHHHHHHHHHh
Q 044943 84 K--EVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 84 ~--~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
. .+-.+.|. +.+.+..++++..
T Consensus 449 ~k~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 449 HKSNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred CCCCCcccCCCcchHHHHhhhccCC
Confidence 4 34455666 8889998887653
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.58 E-value=1.6e-14 Score=97.28 Aligned_cols=100 Identities=24% Similarity=0.447 Sum_probs=80.7
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCCCeEEEEEECcC----chhHHhhcccCccce
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKYTKVVFLKVDIDE----ARDVATRWNIGSVPT 76 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~ 76 (107)
++.+++++.+.+. .+|+|+++||++||-.|+.+++.. .+...+..++...+.|..+ ..++.++|++-++|+
T Consensus 460 s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~ 537 (569)
T COG4232 460 SPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPT 537 (569)
T ss_pred CCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCE
Confidence 3444555555542 335999999999999999999876 3455667799999999864 357789999999999
Q ss_pred EEEEe-CCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 77 FFFIK-NGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 77 ~~~~~-~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
+++|. +|++.....|. +.+.+.+.+++..
T Consensus 538 ~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 538 YLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 99996 88888889999 9999999998754
No 99
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.57 E-value=4.5e-14 Score=85.59 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC-----------chhHHhhccc--------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE-----------ARDVATRWNI-------------- 71 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~-----------~~~~~~~~~v-------------- 71 (107)
.|++++|+||++||++|...+|.++++.+++. ++.++.++++. ...+.+++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 58999999999999999999999999999886 58889887531 1223333322
Q ss_pred ----------------------Cccc---eEEEE-eCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 72 ----------------------GSVP---TFFFI-KNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 72 ----------------------~~~P---~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
..+| +.+++ ++|+++.+..|. +++++.+.|+++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1122 45555 799999999998 88899999988764
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.56 E-value=6.9e-14 Score=80.88 Aligned_cols=74 Identities=35% Similarity=0.625 Sum_probs=62.6
Q ss_pred CCcEEEEEEeCC-CChhhhhhhHHHHHHHhhCC--CeEEEEEECcC---------------------chhHHhhcccC--
Q 044943 19 ALRLVILYFTAT-WCGPCRFISPLFTNLASKYT--KVVFLKVDIDE---------------------ARDVATRWNIG-- 72 (107)
Q Consensus 19 ~~k~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~---------------------~~~~~~~~~v~-- 72 (107)
++|+++|+||++ |||+|+...|.++++.+.+. ++.++.+..+. ...+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 689999999999 99999999999999988743 57787776532 24677788988
Q ss_pred -------ccceEEEE-eCCeEEEEEcCC
Q 044943 73 -------SVPTFFFI-KNGKEVDKVVGA 92 (107)
Q Consensus 73 -------~~P~~~~~-~~g~~~~~~~g~ 92 (107)
++|+++++ ++|+++....|.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99999888 699999999998
No 101
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.56 E-value=1.2e-13 Score=85.47 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=69.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC-------c----hhHH-hhcc--------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE-------A----RDVA-TRWN-------------- 70 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~-------~----~~~~-~~~~-------------- 70 (107)
.+++++|+||++||+.|....|.++++.+++. ++.++.|+++. . ..+. ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 57999999999999999999999999999886 48888888631 1 1221 1211
Q ss_pred --------------------cCccceEEEE-eCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 71 --------------------IGSVPTFFFI-KNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 71 --------------------v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
+...|+.+++ ++|+++.++.|. +++++++.|+++++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1224888888 799999999999 99999999998875
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.55 E-value=1.5e-13 Score=82.81 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=64.1
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc--------------------CchhHHhhcccCccceE
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID--------------------EARDVATRWNIGSVPTF 77 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~~~~~v~~~P~~ 77 (107)
..+++++|+||++||+.|+...|.+.++.+.. +..++.+..+ ...++.+.|++..+|+.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 46899999999999999999999999988764 3444444321 13466788999999998
Q ss_pred EEE-eCCeEEEEEcCCCHHHHHHHHHHH
Q 044943 78 FFI-KNGKEVDKVVGADKSALERKIAQH 104 (107)
Q Consensus 78 ~~~-~~g~~~~~~~g~~~~~l~~~i~~~ 104 (107)
+++ ++|++..+......+.+++.+++.
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 888 588888764333667777777654
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.55 E-value=1.1e-13 Score=82.58 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=63.8
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEE------EEEECcC-----------------------------c
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVF------LKVDIDE-----------------------------A 62 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~------~~i~~~~-----------------------------~ 62 (107)
-.||+.+|+|||+||+.|+..+|.+.++..+ ++.+ ..||.++ .
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3599999999999999999999999999764 2344 4555443 2
Q ss_pred hhHHhhcccCccceE-EEE-eCCeEEEEEcCC-CHHHHHHHH
Q 044943 63 RDVATRWNIGSVPTF-FFI-KNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 63 ~~~~~~~~v~~~P~~-~~~-~~g~~~~~~~g~-~~~~l~~~i 101 (107)
......|++.++|+. +++ ++|+++.+..|. +.+++.+.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 235567899999887 566 799999999999 888776633
No 104
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.54 E-value=1.2e-13 Score=80.58 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=64.7
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCC-CeEEEEEECcCchhHHhhc--------c
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKYT-KVVFLKVDIDEARDVATRW--------N 70 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~~--------~ 70 (107)
|.+..-.++++..+.+++|+++|.++++||.+|+.|.... .++++... ++.-+.+|.++-+++...| |
T Consensus 20 V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 20 VNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp S--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred CCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcC
Confidence 3444445788899999999999999999999999998643 33444332 4788899999999998888 7
Q ss_pred cCccceEEEE-eCCeEEEEEcCCCH------HHHHHHHHHH
Q 044943 71 IGSVPTFFFI-KNGKEVDKVVGADK------SALERKIAQH 104 (107)
Q Consensus 71 v~~~P~~~~~-~~g~~~~~~~g~~~------~~l~~~i~~~ 104 (107)
..|+|+.+|+ .+|+.+.......+ ..+.+.++++
T Consensus 100 ~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i 140 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERI 140 (163)
T ss_dssp ---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHH
T ss_pred CCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHH
Confidence 8899999999 68888876554433 2555555543
No 105
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.53 E-value=1.3e-13 Score=76.55 Aligned_cols=70 Identities=16% Similarity=0.342 Sum_probs=53.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECc---C-----------------chhHHhhcccCccceE
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDID---E-----------------ARDVATRWNIGSVPTF 77 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~---~-----------------~~~~~~~~~v~~~P~~ 77 (107)
++++++|+||++||+.|+...|.++++.+.+. ++.++.+.-+ . ...+.++|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 48999999999999999999999999988764 4555555211 1 1245667888899999
Q ss_pred EEE-eCCeEEEE
Q 044943 78 FFI-KNGKEVDK 88 (107)
Q Consensus 78 ~~~-~~g~~~~~ 88 (107)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 998 47877665
No 106
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.6e-13 Score=76.85 Aligned_cols=94 Identities=17% Similarity=0.314 Sum_probs=75.4
Q ss_pred HHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCC-CeEEEEEECc----------------CchhHHhh
Q 044943 9 FETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKYT-KVVFLKVDID----------------EARDVATR 68 (107)
Q Consensus 9 ~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~i~~~----------------~~~~~~~~ 68 (107)
+.++...+...+|..+++|.++.|++|.+++..+ .++.+.+. ++.++.++.. ...++++.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 3456666777899999999999999999999876 33444433 4777777753 23489999
Q ss_pred cccCccceEEEE-eCCeEEEEEcCC-CHHHHHHHHH
Q 044943 69 WNIGSVPTFFFI-KNGKEVDKVVGA-DKSALERKIA 102 (107)
Q Consensus 69 ~~v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 102 (107)
|+++++|+++++ ++|+.+....|+ +++++...++
T Consensus 111 f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 111 FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred hccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999999999 589999999999 9998877665
No 107
>PLN02412 probable glutathione peroxidase
Probab=99.52 E-value=4.2e-13 Score=79.38 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=69.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC--------chhH----Hhh----------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE--------ARDV----ATR---------------- 68 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~--------~~~~----~~~---------------- 68 (107)
.+|+++|+||++||+.|+...+.++++.+++. ++.++.|+++. ..++ .++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 57999999999999999999999999999887 48888887531 1111 111
Q ss_pred -----cc-------------cCccceEEEE-eCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 69 -----WN-------------IGSVPTFFFI-KNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 69 -----~~-------------v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
|+ +.+.|+.+++ ++|+++.+..|. +++++.+.|+++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 3335888888 799999999999 99999999998875
No 108
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.51 E-value=1.8e-13 Score=85.90 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=74.8
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
|.+.++|-+.+... ..+..|+|+||.+.++.|..+...|..|+..|+.+.|+.|.....+ +...|....+|++++|++
T Consensus 130 i~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~ 207 (265)
T PF02114_consen 130 IDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKN 207 (265)
T ss_dssp --SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEET
T ss_pred ccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEEEEEC
Confidence 44555666665432 3456899999999999999999999999999999999999988765 788899999999999999
Q ss_pred CeEEEEEcCC--------CHHHHHHHHHH
Q 044943 83 GKEVDKVVGA--------DKSALERKIAQ 103 (107)
Q Consensus 83 g~~~~~~~g~--------~~~~l~~~i~~ 103 (107)
|..+..+.|. +...|+.++.+
T Consensus 208 G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 208 GDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp TEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred CEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 9999988764 33456666554
No 109
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.47 E-value=1.3e-12 Score=76.27 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECc--------C---chhHHhh-c---------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDID--------E---ARDVATR-W--------------- 69 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~--------~---~~~~~~~-~--------------- 69 (107)
+||+++|+||++||++|....|.+.++.+++. ++.++.++++ . ...+.++ +
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 68999999999999999999999999999886 5888888741 1 1122221 1
Q ss_pred --------cc---Cccce----EEEE-eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 70 --------NI---GSVPT----FFFI-KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 70 --------~v---~~~P~----~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
.+ .+.|+ .+++ ++|+++.++.|. +++++.+.|++.+
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 11 24785 5555 799999999998 8999998887653
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.47 E-value=2.5e-12 Score=76.26 Aligned_cols=88 Identities=18% Similarity=0.356 Sum_probs=70.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC-----------------------------chhHHh
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE-----------------------------ARDVAT 67 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~-----------------------------~~~~~~ 67 (107)
.++++|++||++||+.|....+.+.++.++++ ++.++.+..+. ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67999999999999999999999999999886 58888887643 124566
Q ss_pred hcccCccceEEEE-eCCeEEEEEc---------CC-CHHHHHHHHHHHhC
Q 044943 68 RWNIGSVPTFFFI-KNGKEVDKVV---------GA-DKSALERKIAQHAG 106 (107)
Q Consensus 68 ~~~v~~~P~~~~~-~~g~~~~~~~---------g~-~~~~l~~~i~~~~~ 106 (107)
.|++..+|.++++ ++|+++.... +. +.+++.+.|++.++
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 7889999999999 5888876531 12 56889999988764
No 111
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.46 E-value=8.6e-13 Score=74.90 Aligned_cols=84 Identities=25% Similarity=0.526 Sum_probs=55.7
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhc---ccCccceEEEEe-CCeEEEEEcCCCH
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRW---NIGSVPTFFFIK-NGKEVDKVVGADK 94 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~P~~~~~~-~g~~~~~~~g~~~ 94 (107)
..+..++.|..+|||.|++..|.+.++++..|++.+-.+..|++.++..+| |...+|+++++. +|+++.++ |..|
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-gerP 118 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GERP 118 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS-
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCCC
Confidence 456678899999999999999999999999998888888888887776655 678999999994 67888877 5556
Q ss_pred HHHHHHHHH
Q 044943 95 SALERKIAQ 103 (107)
Q Consensus 95 ~~l~~~i~~ 103 (107)
+.+.+++.+
T Consensus 119 ~~~~~~~~~ 127 (129)
T PF14595_consen 119 KEVQELVDE 127 (129)
T ss_dssp HHHH-----
T ss_pred HHHhhcccc
Confidence 666665544
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.44 E-value=1.4e-12 Score=76.10 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=60.7
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC-----------chhHHhh-----------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE-----------ARDVATR----------------- 68 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~-----------~~~~~~~----------------- 68 (107)
.+|+++|+||++||+ |....|.++++.+++. ++.++.++.+. ...+.++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 589999999999999 9999999999999885 58888886531 1122221
Q ss_pred -----cc--cCccc-----------eEEEE-eCCeEEEEEcCC-CHHHHHHH
Q 044943 69 -----WN--IGSVP-----------TFFFI-KNGKEVDKVVGA-DKSALERK 100 (107)
Q Consensus 69 -----~~--v~~~P-----------~~~~~-~~g~~~~~~~g~-~~~~l~~~ 100 (107)
|+ +.++| +++++ ++|+++.++.|. +++++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 12 23466 56666 799999999998 88877654
No 113
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.42 E-value=9.5e-12 Score=76.25 Aligned_cols=89 Identities=24% Similarity=0.430 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc-----------CchhHHhhcccCccceEE
Q 044943 10 ETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID-----------EARDVATRWNIGSVPTFF 78 (107)
Q Consensus 10 ~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~v~~~P~~~ 78 (107)
++.+..+ .++.-|++||.++|++|+.+.|.+..++.++ ++.+..|++| .+..+.+++++..+|+++
T Consensus 112 ~~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 112 DKALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 4445543 3788899999999999999999999999998 7777777776 346788999999999999
Q ss_pred EEe-CC-eEEEEEcCC-CHHHHHHHH
Q 044943 79 FIK-NG-KEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 79 ~~~-~g-~~~~~~~g~-~~~~l~~~i 101 (107)
++. ++ +......|. +.++|.+-|
T Consensus 189 Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 189 LVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEECCCCeEEEEeeecCCHHHHHHhh
Confidence 994 33 566667788 999887654
No 114
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.8e-12 Score=85.51 Aligned_cols=88 Identities=23% Similarity=0.431 Sum_probs=76.7
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcCchhHHhhcccCccceEEEEeCCeE-EEEEcCC-
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKE-VDKVVGA- 92 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~-~~~~~g~- 92 (107)
+.....+|.||+|||++|+.+.|.+.+++..+. .+.+..+|++....++..+++.++|++.+|++|.. .....|.
T Consensus 160 ~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R 239 (383)
T KOG0191|consen 160 DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLR 239 (383)
T ss_pred ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccc
Confidence 457788999999999999999999999998763 58999999998999999999999999999987777 6666676
Q ss_pred CHHHHHHHHHHHh
Q 044943 93 DKSALERKIAQHA 105 (107)
Q Consensus 93 ~~~~l~~~i~~~~ 105 (107)
+.+.+..++....
T Consensus 240 ~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 240 DSDSIVSFVEKKE 252 (383)
T ss_pred cHHHHHHHHHhhc
Confidence 8999999987654
No 115
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.41 E-value=2.3e-11 Score=67.90 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCC----CChhhhhhh--HHHHHHHhhCCCeEEEEEECc--CchhHHhhcccCccceEE
Q 044943 7 SEFETKLNAATRALRLVILYFTAT----WCGPCRFIS--PLFTNLASKYTKVVFLKVDID--EARDVATRWNIGSVPTFF 78 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~----~C~~C~~~~--~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~v~~~P~~~ 78 (107)
..+++++..+.++.|.++|+++++ ||..|+... |.+.++... ++.+...|++ +...++..+++.++|+++
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 468899999999999999999999 888887665 455555543 5778888875 345788999999999999
Q ss_pred EE---e-CCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 79 FI---K-NGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 79 ~~---~-~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
++ . +..++.+..|. +++++...+....+
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 99 2 34578899999 99999999987654
No 116
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.7e-13 Score=92.09 Aligned_cols=98 Identities=19% Similarity=0.432 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---C-eEEEEEECc--CchhHHhhcccCccceEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT---K-VVFLKVDID--EARDVATRWNIGSVPTFF 78 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~-~~~~~i~~~--~~~~~~~~~~v~~~P~~~ 78 (107)
+.+.|..++.. +++..+|.||++||+.|+++.|.++++++... . +.+..|||- .+..+|+.|+|.++|++.
T Consensus 45 d~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlr 121 (606)
T KOG1731|consen 45 DVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLR 121 (606)
T ss_pred ehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceee
Confidence 34566666653 34677999999999999999999999988754 3 888899984 577899999999999999
Q ss_pred EEeCC----eEEEEEcCC-CHHHHHHHHHHHh
Q 044943 79 FIKNG----KEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 79 ~~~~g----~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
+|..+ ..-....|. .+.++.+.+.+.+
T Consensus 122 yf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 122 YFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred ecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 99422 111233344 5666666665443
No 117
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.38 E-value=7.6e-12 Score=64.07 Aligned_cols=68 Identities=24% Similarity=0.517 Sum_probs=53.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchh----HHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARD----VATRWNIGSVPTFFFIKNGKEVDKVVGADKSALER 99 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 99 (107)
+..|+++||++|+++.+.+++ .++.+..+|++..+. +.+.+++.++|++++. |+. ..|.+++.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 567999999999999988876 367888888876654 4567899999999874 544 66778888887
Q ss_pred HH
Q 044943 100 KI 101 (107)
Q Consensus 100 ~i 101 (107)
+|
T Consensus 72 ~i 73 (74)
T TIGR02196 72 LL 73 (74)
T ss_pred Hh
Confidence 76
No 118
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.36 E-value=1.2e-11 Score=70.89 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=65.8
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC---------------------chhHHhhcccCcc
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE---------------------ARDVATRWNIGSV 74 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~---------------------~~~~~~~~~v~~~ 74 (107)
.+++++|.|| +.||+.|....+.+.++.+.+. ++.++.|..+. ...+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4899999999 6899999999999998887764 57788776532 2356677888887
Q ss_pred ---------ceEEEE-eCCeEEEEEcCC-CHHHHHHHH
Q 044943 75 ---------PTFFFI-KNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 75 ---------P~~~~~-~~g~~~~~~~g~-~~~~l~~~i 101 (107)
|+++++ ++|+++..+.|. ..+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 898888 589999999998 666666654
No 119
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.35 E-value=1.5e-11 Score=68.57 Aligned_cols=97 Identities=19% Similarity=0.405 Sum_probs=62.6
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC-------CChhhhhhhHHHHHHHhhCC-CeEEEEEECcCc-------hhHHh
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT-------WCGPCRFISPLFTNLASKYT-KVVFLKVDIDEA-------RDVAT 67 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~-------~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~-------~~~~~ 67 (107)
+...+++.+.+......+++++|.|+++ |||.|....|.+++.....+ +..++.+.+..- ..+..
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 5677888898888777889999999855 99999999999988777655 578887766321 23333
Q ss_pred --hcccCccceEEEEeCCeEEEEEcCC---CHHHHHHHHH
Q 044943 68 --RWNIGSVPTFFFIKNGKEVDKVVGA---DKSALERKIA 102 (107)
Q Consensus 68 --~~~v~~~P~~~~~~~g~~~~~~~g~---~~~~l~~~i~ 102 (107)
++++.++||++-+..+ .+..+. +.+.+..+++
T Consensus 82 ~p~~~l~~IPTLi~~~~~---~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG---ERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp --CC---SSSEEEECTSS----EEEHHHHH-HHHHHHHHH
T ss_pred cceeeeeecceEEEECCC---CccchhhhccHHHHHHHhc
Confidence 5899999999999766 233332 4455554443
No 120
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.35 E-value=1.3e-11 Score=67.76 Aligned_cols=84 Identities=39% Similarity=0.748 Sum_probs=69.4
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECc-CchhHHhhcc--cCccceEEEEeCCeEEEEEcC--C-
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDID-EARDVATRWN--IGSVPTFFFIKNGKEVDKVVG--A- 92 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~-~~~~~~~~~~--v~~~P~~~~~~~g~~~~~~~g--~- 92 (107)
++++++.||++||++|+.+.|.+.++.+.++. +.++.++.. ....+...|+ +..+|+++++.+|..+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 78999999999999999999999999999884 999999997 7889999999 999999998887776555554 3
Q ss_pred CHHHHHHHHHH
Q 044943 93 DKSALERKIAQ 103 (107)
Q Consensus 93 ~~~~l~~~i~~ 103 (107)
+...+......
T Consensus 112 ~~~~~~~~~~~ 122 (127)
T COG0526 112 PKEALIDALGE 122 (127)
T ss_pred CHHHHHHHhcc
Confidence 55555544433
No 121
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.34 E-value=7e-11 Score=73.84 Aligned_cols=94 Identities=13% Similarity=0.278 Sum_probs=74.5
Q ss_pred HHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc-----------hhHHhhcccCccceE
Q 044943 9 FETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA-----------RDVATRWNIGSVPTF 77 (107)
Q Consensus 9 ~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~~v~~~P~~ 77 (107)
-++.+..+ .++.-|++||.+.|++|+++.|.++.++++| ++.+..|++|.. ...++++|+..+|++
T Consensus 141 ~~~~i~~l--a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal 217 (256)
T TIGR02739 141 KEKAIQQL--SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPAL 217 (256)
T ss_pred HHHHHHHH--HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceE
Confidence 34455554 3558899999999999999999999999998 577777776643 457889999999999
Q ss_pred EEEe-C-CeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 78 FFIK-N-GKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 78 ~~~~-~-g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
+++. + ++......|. +.++|.+.|...+
T Consensus 218 ~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 218 YLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 9994 3 5566667788 9999988876654
No 122
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.32 E-value=1.8e-11 Score=72.60 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=71.4
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA 92 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 92 (107)
.+...|+++||-+.-..|+.+...++.+++.|.+..|+.||....|-+..+++|..+|++++|.+|..+.++.|+
T Consensus 82 ~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 82 KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeH
Confidence 456779999999999999999999999999999999999999999999999999999999999999999998885
No 123
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.31 E-value=7.3e-11 Score=61.26 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=56.3
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcC-C-CHHHHHHHHH
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-A-DKSALERKIA 102 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g-~-~~~~l~~~i~ 102 (107)
.+++++|++|..+...++++...+ ++.+-.+|....+++ .+||+.++|++++ ||+.+. .| . +.+++.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~--~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVF--VGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEE--ESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEE--EecCCCHHHHHHHhC
Confidence 346888999999999999999998 477777787767777 9999999999966 777654 46 4 8888888874
No 124
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.28 E-value=7.1e-11 Score=68.04 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=64.8
Q ss_pred CCcEEEEEEeCCC-ChhhhhhhHHHHHHHhhCCCeEEEEEECcCc-----------------------hhHHhhcccCc-
Q 044943 19 ALRLVILYFTATW-CGPCRFISPLFTNLASKYTKVVFLKVDIDEA-----------------------RDVATRWNIGS- 73 (107)
Q Consensus 19 ~~k~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------~~~~~~~~v~~- 73 (107)
.+|+++|+||+.| |+.|....+.+.++.++++++.++.|+.+.. ..+.+.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 5889999999998 6999999999999999988888998877421 34556777753
Q ss_pred -----cceEEEE-eCCeEEEEEcCC---CHHHHHHHH
Q 044943 74 -----VPTFFFI-KNGKEVDKVVGA---DKSALERKI 101 (107)
Q Consensus 74 -----~P~~~~~-~~g~~~~~~~g~---~~~~l~~~i 101 (107)
.|+++++ ++|+++....|. ....+.+.+
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6888888 589999988765 344555544
No 125
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.28 E-value=5.8e-11 Score=71.24 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCcEE-EEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC----c----h---hH-Hhh---------------
Q 044943 19 ALRLV-ILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE----A----R---DV-ATR--------------- 68 (107)
Q Consensus 19 ~~k~~-lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~----~----~---~~-~~~--------------- 68 (107)
.||++ ++.+|++||++|...+|.++++.+++. ++.++.++++. . . .+ .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 57754 556699999999999999999998876 58888887531 0 0 01 111
Q ss_pred ---------------------cccCccce---EEEE-eCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 69 ---------------------WNIGSVPT---FFFI-KNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 69 ---------------------~~v~~~P~---~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
+++.++|+ .+++ ++|+++.++.|. +.+.+.+.|.++++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 12346784 3444 799999999998 88899999988764
No 126
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.28 E-value=2.2e-10 Score=71.29 Aligned_cols=94 Identities=11% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-----------chhHHhhcccCccceE
Q 044943 9 FETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-----------ARDVATRWNIGSVPTF 77 (107)
Q Consensus 9 ~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~v~~~P~~ 77 (107)
-++.+..+. ++.-|++||.+.|++|+++.|.++.+++++ ++.++.|++|. +....+++++..+|++
T Consensus 134 ~~~~i~~la--~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl 210 (248)
T PRK13703 134 QRQAIAKLA--EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPAL 210 (248)
T ss_pred HHHHHHHHH--hcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceE
Confidence 344555543 458899999999999999999999999998 56666666553 2235678999999999
Q ss_pred EEEe--CCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 78 FFIK--NGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 78 ~~~~--~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
+++. .++...-..|. +.++|.+.|...+
T Consensus 211 ~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 211 MLVDPKSGSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 9984 45666677798 9999988887654
No 127
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.1e-12 Score=75.18 Aligned_cols=83 Identities=31% Similarity=0.548 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccC------ccceE
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIG------SVPTF 77 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~------~~P~~ 77 (107)
...+++.+. .++.+..+|.|++.|.+.|++..|.+.+++.+|. ++.|..+|+...++.+++|+|. ..||+
T Consensus 132 ~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ 209 (265)
T KOG0914|consen 132 MQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTY 209 (265)
T ss_pred hhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeE
Confidence 344455444 3677889999999999999999999999999886 5999999999999999999885 79999
Q ss_pred EEEeCCeEEEEEc
Q 044943 78 FFIKNGKEVDKVV 90 (107)
Q Consensus 78 ~~~~~g~~~~~~~ 90 (107)
++|.+|+++.+..
T Consensus 210 ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 210 ILFQKGKEVSRRP 222 (265)
T ss_pred EEEccchhhhcCc
Confidence 9999999887643
No 128
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.26 E-value=1.4e-10 Score=68.65 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCcEEEEEEeCCC-ChhhhhhhHHHHHHHhhCCCeEEEEEECcC-----------------------chhHHhhcccCcc
Q 044943 19 ALRLVILYFTATW-CGPCRFISPLFTNLASKYTKVVFLKVDIDE-----------------------ARDVATRWNIGSV 74 (107)
Q Consensus 19 ~~k~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-----------------------~~~~~~~~~v~~~ 74 (107)
.+|+++|+||++| |+.|....+.++++.+.+.++.++.++.|. ...+++.||+...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 5889999999999 999999999999999888778888886542 1266778888877
Q ss_pred c---------eEEEE-eCCeEEEEEcC
Q 044943 75 P---------TFFFI-KNGKEVDKVVG 91 (107)
Q Consensus 75 P---------~~~~~-~~g~~~~~~~g 91 (107)
| +++++ ++|+++....+
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEEC
Confidence 7 77777 58998888754
No 129
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.26 E-value=4.3e-10 Score=61.25 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=69.8
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCch----hHHhhcccC-ccc
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEAR----DVATRWNIG-SVP 75 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~~~v~-~~P 75 (107)
+|.+.+++++.+.. ..+++++|+=.+.+||-+..+...+++.....++ +.++.+|+-+.+ .++++|||. .-|
T Consensus 3 ~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 3 PLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred ccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence 57889999998886 4689999999999999999999999999888776 999999987665 467889986 899
Q ss_pred eEEEEeCCeEEEEEcCC--CHHHH
Q 044943 76 TFFFIKNGKEVDKVVGA--DKSAL 97 (107)
Q Consensus 76 ~~~~~~~g~~~~~~~g~--~~~~l 97 (107)
.++++++|+.+...... +.+.|
T Consensus 81 Q~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cEEEEECCEEEEECccccCCHHhc
Confidence 99999999999987654 55554
No 130
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.24 E-value=7.6e-11 Score=66.19 Aligned_cols=69 Identities=29% Similarity=0.572 Sum_probs=57.2
Q ss_pred CCcEEEEEEeCC-CChhhhhhhHHHHHHHhhCC--CeEEEEEECcC---------------------chhHHhhcccC--
Q 044943 19 ALRLVILYFTAT-WCGPCRFISPLFTNLASKYT--KVVFLKVDIDE---------------------ARDVATRWNIG-- 72 (107)
Q Consensus 19 ~~k~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~---------------------~~~~~~~~~v~-- 72 (107)
.+++++|.||+. ||+.|....+.++++..+++ ++.++.+..+. ...+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 99999999999999988776 78999888653 33567778888
Q ss_pred ----ccceEEEE-eCCeEEE
Q 044943 73 ----SVPTFFFI-KNGKEVD 87 (107)
Q Consensus 73 ----~~P~~~~~-~~g~~~~ 87 (107)
..|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89999999 4677654
No 131
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.23 E-value=1.8e-10 Score=59.61 Aligned_cols=70 Identities=26% Similarity=0.463 Sum_probs=49.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhh-----cccCccceEEEEeCCeEEEEEcCCCHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATR-----WNIGSVPTFFFIKNGKEVDKVVGADKSALE 98 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~ 98 (107)
++.||++||++|+++++.+.++. +.+-.+|+++.+..... ++..++|++ ++.+|+.+. ..+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 56899999999999999987753 44556777766655554 388999997 567775433 44556665
Q ss_pred HHHH
Q 044943 99 RKIA 102 (107)
Q Consensus 99 ~~i~ 102 (107)
+.+.
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.23 E-value=1.1e-10 Score=57.51 Aligned_cols=60 Identities=33% Similarity=0.692 Sum_probs=51.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHh---hcccCccceEEEEeCC
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVAT---RWNIGSVPTFFFIKNG 83 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~v~~~P~~~~~~~g 83 (107)
++.||++||++|+++.+.+.++....+++.+..++++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999985555679999999988776654 7899999999998766
No 133
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.22 E-value=2.9e-10 Score=60.15 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=58.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch----hHHhhcc--cCccceEEEEeCCeEEEEEcCCCHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR----DVATRWN--IGSVPTFFFIKNGKEVDKVVGADKSAL 97 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~--v~~~P~~~~~~~g~~~~~~~g~~~~~l 97 (107)
++.|+.+||++|+++...++++...+.++.+..+|++..+ ++.+.++ ...+|++++ +|+.+. ..+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~~ 75 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTDF 75 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHHH
Confidence 6789999999999999999999988778889999887643 4555455 478999864 676543 35777
Q ss_pred HHHHHHHhC
Q 044943 98 ERKIAQHAG 106 (107)
Q Consensus 98 ~~~i~~~~~ 106 (107)
.++++..++
T Consensus 76 ~~~~~~~~~ 84 (85)
T PRK11200 76 EAYVKENLG 84 (85)
T ss_pred HHHHHHhcc
Confidence 777776654
No 134
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=2.3e-10 Score=63.47 Aligned_cols=100 Identities=27% Similarity=0.443 Sum_probs=82.6
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
+.|.++.++++.. ...+.+++-|..+|-|.|.++...+.++++...+ ..++-+|.++.+++.+-|++...|++++|-
T Consensus 8 L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 8 LHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 6788889999876 5789999999999999999999999999999887 677788999999999999999999999997
Q ss_pred CCeEEEEEcCC-----------CHHHHHHHHHHH
Q 044943 82 NGKEVDKVVGA-----------DKSALERKIAQH 104 (107)
Q Consensus 82 ~g~~~~~~~g~-----------~~~~l~~~i~~~ 104 (107)
+++.+....|. +.+++.+.++.+
T Consensus 86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 76666544332 455666665543
No 135
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.21 E-value=9.6e-11 Score=67.77 Aligned_cols=70 Identities=23% Similarity=0.616 Sum_probs=53.6
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhC----CCeEEEEEECcC-------------------------chhHHhhc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKY----TKVVFLKVDIDE-------------------------ARDVATRW 69 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~----~~~~~~~i~~~~-------------------------~~~~~~~~ 69 (107)
.||.+.++|.+.||++|+.+-|.+.++.++. ..+.++-|+.|. ..++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999987765543 334555444432 23678899
Q ss_pred ccCccceEEEE-eCCeEEEE
Q 044943 70 NIGSVPTFFFI-KNGKEVDK 88 (107)
Q Consensus 70 ~v~~~P~~~~~-~~g~~~~~ 88 (107)
++.++|+++++ .+|.++..
T Consensus 112 ~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred ccCcCceeEEecCCCCEehH
Confidence 99999999999 57876653
No 136
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.21 E-value=2.1e-10 Score=66.27 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=33.2
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhC--CCeEEEEEECc
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKY--TKVVFLKVDID 60 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~i~~~ 60 (107)
++.++++|+++||+.|+...+.+.++.+++ .++.++.|..+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 445556567999999999999999998887 36888888764
No 137
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.21 E-value=1.4e-10 Score=71.88 Aligned_cols=80 Identities=16% Similarity=0.338 Sum_probs=60.7
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC---------------------------------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI--------------------------------------- 59 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--------------------------------------- 59 (107)
+++.+++.|+.+.||+|+++.+.+.++.+. ++.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 468889999999999999999999887653 333332211
Q ss_pred -----cCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHHHH
Q 044943 60 -----DEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 60 -----~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
+++..+++++|+.++|+++ +.+|+.+ .|. +++.|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 1224677788999999998 6788765 688 899999998764
No 138
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.18 E-value=7.2e-10 Score=64.65 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCcEEEEEEeCC-CChhhhhhhHHHHHHHhhCC--CeEEEEEECcC---------------------chhHHhhcccCcc
Q 044943 19 ALRLVILYFTAT-WCGPCRFISPLFTNLASKYT--KVVFLKVDIDE---------------------ARDVATRWNIGSV 74 (107)
Q Consensus 19 ~~k~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~---------------------~~~~~~~~~v~~~ 74 (107)
++++++|+||+. ||+.|....+.+.++.+.+. ++.++.|+.+. ...+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 78999999999988877764 58888887642 2345667777543
Q ss_pred ------------ceEEEE-eCCeEEEEEcCC-CHHHHHHHHHH
Q 044943 75 ------------PTFFFI-KNGKEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 75 ------------P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~ 103 (107)
|+.+++ ++|+++..+.|. ..+.+.+.++.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 666666 699999999998 55555554443
No 139
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.17 E-value=7.9e-10 Score=65.74 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=63.8
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc----------------------------hhHHh
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA----------------------------RDVAT 67 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~----------------------------~~~~~ 67 (107)
.+|+++|+|| +.||+.|....+.++++.+++. ++.++.|..+.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5799999999 8999999999999999888774 577777765432 23445
Q ss_pred hcccC------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHHHH
Q 044943 68 RWNIG------SVPTFFFI-KNGKEVDKVVGA-----DKSALERKIAQH 104 (107)
Q Consensus 68 ~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 104 (107)
.|++. ..|+++++ ++|+++....+. +.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 56765 57788888 589988887543 456677776554
No 140
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=7.9e-10 Score=60.91 Aligned_cols=79 Identities=22% Similarity=0.408 Sum_probs=60.2
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC--------CChhhhhhhHHHHHHHhhCC-CeEEEEEECcC-------chhHH
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT--------WCGPCRFISPLFTNLASKYT-KVVFLKVDIDE-------ARDVA 66 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~--------~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~-------~~~~~ 66 (107)
++-.+++++.+.... +++.++|.|+++ |||.|.++.|.+.+..+..+ ++.|+.+++.. +..+.
T Consensus 9 ~~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR 87 (128)
T KOG3425|consen 9 LPGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR 87 (128)
T ss_pred cchHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc
Confidence 455677888887764 455699999864 99999999999998877655 68999888753 23455
Q ss_pred hhccc-CccceEEEEeC
Q 044943 67 TRWNI-GSVPTFFFIKN 82 (107)
Q Consensus 67 ~~~~v-~~~P~~~~~~~ 82 (107)
...++ .++||++-+.+
T Consensus 88 ~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 88 KDPGILTAVPTLLRWKR 104 (128)
T ss_pred cCCCceeecceeeEEcC
Confidence 55566 89999999964
No 141
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.16 E-value=4.7e-10 Score=67.24 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=35.9
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDID 60 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~ 60 (107)
.||++||.|||+||+.|. ..+.|+++.+++. ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 689999999999999996 5889999999886 5899999774
No 142
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.4e-11 Score=72.44 Aligned_cols=87 Identities=28% Similarity=0.497 Sum_probs=78.4
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHH
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSAL 97 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l 97 (107)
.+++..+++||++||..|.++...+..+++..+++.++.++.+..++++..+.+...|.++++..|+.+.+..|..+..+
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 37899999999999999999999999999988999999999999999999999999999999999999999999866655
Q ss_pred HHHHHHH
Q 044943 98 ERKIAQH 104 (107)
Q Consensus 98 ~~~i~~~ 104 (107)
...+..+
T Consensus 95 ~~~~~~~ 101 (227)
T KOG0911|consen 95 VSKVEKL 101 (227)
T ss_pred HHHHHHh
Confidence 5555443
No 143
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.12 E-value=2e-09 Score=64.85 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=62.0
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC-------------------------chhHHhhcc
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE-------------------------ARDVATRWN 70 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~-------------------------~~~~~~~~~ 70 (107)
.|++++|+|| +.||+.|....+.++++...+. ++.++.|..+. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5889999999 9999999999999988877764 57777776542 224566778
Q ss_pred cC------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHH
Q 044943 71 IG------SVPTFFFI-KNGKEVDKVVGA-----DKSALERKIA 102 (107)
Q Consensus 71 v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~ 102 (107)
+. ..|+++++ ++|+++....+. ..+++.+.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 75 46888888 589888876332 4556666554
No 144
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.11 E-value=1.5e-09 Score=57.55 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=55.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch----hHHhhccc--CccceEEEEeCCeEEEEEcCCCHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR----DVATRWNI--GSVPTFFFIKNGKEVDKVVGADKSAL 97 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~v--~~~P~~~~~~~g~~~~~~~g~~~~~l 97 (107)
++.|+.+|||+|.+++..|.++...++++.+..+|.+... ++.+.++- ..+|++++ +|+.+. ..++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig-----G~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG-----GCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec-----CHHHH
Confidence 6789999999999999999999877777888888887432 45566664 79999954 565432 34666
Q ss_pred HHHHHHHh
Q 044943 98 ERKIAQHA 105 (107)
Q Consensus 98 ~~~i~~~~ 105 (107)
.+++++..
T Consensus 75 ~~~~~~~~ 82 (86)
T TIGR02183 75 EQLVKENF 82 (86)
T ss_pred HHHHHhcc
Confidence 66666543
No 145
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.09 E-value=6.9e-10 Score=58.32 Aligned_cols=60 Identities=20% Similarity=0.394 Sum_probs=45.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch-----hHHhhcccCccceEEEEeCCeEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR-----DVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
++.|+++|||+|+++.+.+.++.-. +.+.++.++.+... .+.+.+++..+|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4689999999999999999997722 23778888776443 2566679999999854 66554
No 146
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.09 E-value=1e-08 Score=57.58 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=77.9
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEE-
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFI- 80 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~- 80 (107)
+++..+.++++.. .+.+.+++-|..+|-+.|.++...+.++++...+ ..++.+|.++.+++.+.|.+. -|..++|
T Consensus 5 L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 5 LHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp E-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 6788899999986 5799999999999999999999999999998877 788899999999999999999 7765555
Q ss_pred eCCeEEEEEcCC-----------CHHHHHHHHHH
Q 044943 81 KNGKEVDKVVGA-----------DKSALERKIAQ 103 (107)
Q Consensus 81 ~~g~~~~~~~g~-----------~~~~l~~~i~~ 103 (107)
-+++.+....|. +.+++.+.++.
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 577777655442 45666666654
No 147
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.07 E-value=3.6e-09 Score=61.21 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=54.9
Q ss_pred cEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC---------------------c--hhHHhhcccCc-
Q 044943 21 RLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE---------------------A--RDVATRWNIGS- 73 (107)
Q Consensus 21 k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~---------------------~--~~~~~~~~v~~- 73 (107)
++++|.|| ++||+.|....+.++++.+++. ++.++.|+.+. . ..+.+.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888787 9999999999999999988775 57887776432 2 45667778763
Q ss_pred ---c--ceEEEE-eCCeEEEEEcCC
Q 044943 74 ---V--PTFFFI-KNGKEVDKVVGA 92 (107)
Q Consensus 74 ---~--P~~~~~-~~g~~~~~~~g~ 92 (107)
. |+++++ ++|+++....|.
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecC
Confidence 3 367777 589999988775
No 148
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.07 E-value=4.1e-09 Score=72.70 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=67.2
Q ss_pred CcEE-EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHH
Q 044943 20 LRLV-ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSAL 97 (107)
Q Consensus 20 ~k~~-lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 97 (107)
++++ +-.|.+++|++|..+...+++++...|++..-.+|....+++.++|++.++|++++ ||+.+.. |. +.+++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~~--G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVYF--GKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEEe--eCCCHHHH
Confidence 4555 55678999999999999999999999999999999999999999999999999988 5665533 66 88888
Q ss_pred HHHH
Q 044943 98 ERKI 101 (107)
Q Consensus 98 ~~~i 101 (107)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8775
No 149
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=99.05 E-value=2.9e-09 Score=66.80 Aligned_cols=83 Identities=13% Similarity=0.306 Sum_probs=58.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC---------------------------------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI--------------------------------------- 59 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--------------------------------------- 59 (107)
+.+.+++.|+.+.||+|+++.+.+..+.+. .++.+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 467889999999999999999998887654 3344443321
Q ss_pred -----------cCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHH
Q 044943 60 -----------DEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIA 102 (107)
Q Consensus 60 -----------~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 102 (107)
+++..+.+++|+.++|++++-.....+....|. ++++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 001135567899999999887532344556798 8888888764
No 150
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.02 E-value=5.4e-09 Score=59.81 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhC--CCeEEEEEECcC----------------------chhHHhhcccCc
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKY--TKVVFLKVDIDE----------------------ARDVATRWNIGS 73 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~--~~~~~~~i~~~~----------------------~~~~~~~~~v~~ 73 (107)
.+++++|+|| +.||+.|....+.+.++.+.+ .++.++.+..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 789999999999999988875 367788776542 234556677776
Q ss_pred cc---------eEEEE-eCCeEEEEEcCC
Q 044943 74 VP---------TFFFI-KNGKEVDKVVGA 92 (107)
Q Consensus 74 ~P---------~~~~~-~~g~~~~~~~g~ 92 (107)
.| +++++ ++|+++....|.
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecC
Confidence 65 67777 579999998887
No 151
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.01 E-value=8.7e-09 Score=70.55 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=68.0
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHH
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALE 98 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~ 98 (107)
+..-+..|.+++||+|..+...+++++...|++..-.+|....+++..+|++.++|++++ +|+.. +.|. +.+++.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence 344488899999999999999999999999999999999999999999999999999976 55433 4476 777777
Q ss_pred HHHHH
Q 044943 99 RKIAQ 103 (107)
Q Consensus 99 ~~i~~ 103 (107)
+.+.+
T Consensus 192 ~~~~~ 196 (517)
T PRK15317 192 AKLDT 196 (517)
T ss_pred HHHhc
Confidence 77754
No 152
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.01 E-value=3.5e-09 Score=60.77 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=36.1
Q ss_pred CCcEEEEEEeCCCChh-hhhhhHHHHHHHhhCC-----CeEEEEEECc
Q 044943 19 ALRLVILYFTATWCGP-CRFISPLFTNLASKYT-----KVVFLKVDID 60 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~-----~~~~~~i~~~ 60 (107)
++++++|.||++||+. |....+.++++.+++. ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6899999999999997 9999999999888775 2888888654
No 153
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.00 E-value=1e-08 Score=62.44 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCcEEEE-EEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC---------------------------chhHHhh
Q 044943 19 ALRLVIL-YFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE---------------------------ARDVATR 68 (107)
Q Consensus 19 ~~k~~lv-~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~---------------------------~~~~~~~ 68 (107)
.++.++| +||++||+.|....+.+.++..++. ++.++.++.+. ...+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5676655 6899999999999999998887764 57777776542 2345566
Q ss_pred cccC------ccceEEEE-eCCeEEEEE----c-CCCHHHHHHHHHHHh
Q 044943 69 WNIG------SVPTFFFI-KNGKEVDKV----V-GADKSALERKIAQHA 105 (107)
Q Consensus 69 ~~v~------~~P~~~~~-~~g~~~~~~----~-g~~~~~l~~~i~~~~ 105 (107)
||+. .+|.++++ ++|++.... . |.+.+++.+.++.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 7763 58999999 588877654 2 337888888877653
No 154
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.99 E-value=8.4e-09 Score=52.48 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=48.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhc----ccCccceEEEEeCCeEEEEEcCCCHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRW----NIGSVPTFFFIKNGKEVDKVVGADKSALER 99 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 99 (107)
++.|+++||++|+++...+.+ .++.+..++++......+.+ +...+|++++ +| ....|.+++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 567999999999999888876 25666777777655444433 6789999976 44 3455777777766
Q ss_pred H
Q 044943 100 K 100 (107)
Q Consensus 100 ~ 100 (107)
+
T Consensus 72 ~ 72 (73)
T cd02976 72 L 72 (73)
T ss_pred h
Confidence 4
No 155
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.97 E-value=3e-08 Score=59.71 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=64.9
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC-------------------------chhHHhhcc
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE-------------------------ARDVATRWN 70 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~-------------------------~~~~~~~~~ 70 (107)
.+|+++++|| +.||+.|....+.+++...++. ++.++.|+.+. ...+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 9999999999999999888874 57777776542 235677888
Q ss_pred c----Ccc--ceEEEE-eCCeEEEEEcC-----CCHHHHHHHHHHH
Q 044943 71 I----GSV--PTFFFI-KNGKEVDKVVG-----ADKSALERKIAQH 104 (107)
Q Consensus 71 v----~~~--P~~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~ 104 (107)
+ .++ |+++++ ++|+++..... .+.+++.+.++++
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 7 356 998888 58888776432 2677777777543
No 156
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.96 E-value=6.1e-09 Score=63.15 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=54.0
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC---------------------------------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI--------------------------------------- 59 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--------------------------------------- 59 (107)
++++.++.|+.++||+|+++.+.+.+ ...++.+..+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 46899999999999999999999887 122333332211
Q ss_pred ------cCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 044943 60 ------DEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 60 ------~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 101 (107)
+.+..+++++|+.++|+++ +.+|+. ..|. +.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1123567788999999997 777866 4588 777777653
No 157
>PHA03050 glutaredoxin; Provisional
Probab=98.93 E-value=1.6e-08 Score=55.82 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=49.3
Q ss_pred HHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-c----hhHHhhcccCccceEEEEeCCeE
Q 044943 11 TKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-A----RDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 11 ~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~----~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
+.++...++++ ++.|+.+|||+|++++..|++..-..+.+..+.++-.. . ..+.+..|...+|++++ +|+.
T Consensus 4 ~~v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~ 79 (108)
T PHA03050 4 EFVQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTS 79 (108)
T ss_pred HHHHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEE
Confidence 34555555555 66899999999999999998876554445555555311 2 23455568889999955 5666
Q ss_pred EE
Q 044943 86 VD 87 (107)
Q Consensus 86 ~~ 87 (107)
+.
T Consensus 80 iG 81 (108)
T PHA03050 80 IG 81 (108)
T ss_pred Ee
Confidence 54
No 158
>PRK15000 peroxidase; Provisional
Probab=98.93 E-value=3.6e-08 Score=59.98 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=64.9
Q ss_pred CCcEEEEEEeC-CCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc----------------------------hhHHh
Q 044943 19 ALRLVILYFTA-TWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA----------------------------RDVAT 67 (107)
Q Consensus 19 ~~k~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~----------------------------~~~~~ 67 (107)
++|+++++||. +||+.|....+.+.++.+++. ++.++.+..|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 58899999999 599999999999999888775 577887776521 24455
Q ss_pred hcccC------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHHHH
Q 044943 68 RWNIG------SVPTFFFI-KNGKEVDKVVGA-----DKSALERKIAQH 104 (107)
Q Consensus 68 ~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 104 (107)
.||+. ..|.++++ ++|++.....+. +.+++.+.++++
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 67776 68999998 489888876552 556666666543
No 159
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.92 E-value=3.3e-08 Score=67.75 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=68.3
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHH
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALE 98 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~ 98 (107)
+..-+..|.++.||+|..+...+++++...|++..-.+|....+++..+|++.++|++++ +|+.. ..|. +.+++.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~ 192 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELL 192 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence 344588899999999999999999999999999999999999999999999999999976 45433 4476 777777
Q ss_pred HHHHHH
Q 044943 99 RKIAQH 104 (107)
Q Consensus 99 ~~i~~~ 104 (107)
+.+.+.
T Consensus 193 ~~l~~~ 198 (515)
T TIGR03140 193 EKLEET 198 (515)
T ss_pred HHHhhc
Confidence 776544
No 160
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.89 E-value=4.1e-08 Score=48.50 Aligned_cols=55 Identities=22% Similarity=0.485 Sum_probs=42.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhH----HhhcccCccceEEEEeCCeE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDV----ATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v~~~P~~~~~~~g~~ 85 (107)
++.|+.+|||+|++++..|++ .++.+-.+|++..++. .+..+...+|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 568999999999999999955 3577888888776543 33349999999986 6654
No 161
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.89 E-value=3.3e-08 Score=57.17 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEE
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKV 57 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i 57 (107)
+.+++++.|+.++||+|+++.+.+.++...++++.+...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 468899999999999999999999998877776544433
No 162
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.87 E-value=9.1e-08 Score=50.19 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=55.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHH---hhcccCccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVA---TRWNIGSVPTFFFIKNGKEVDKVVGADKSALERK 100 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 100 (107)
+..|+.+||++|++++..|.+ .++.|-.+|++..++.. ...|...+|++++ ++ ....|+++++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHHH
Confidence 567899999999999999965 46888888888766533 3347789999965 44 34558999999998
Q ss_pred HHHHh
Q 044943 101 IAQHA 105 (107)
Q Consensus 101 i~~~~ 105 (107)
+....
T Consensus 73 ~~~~~ 77 (81)
T PRK10329 73 HPAPH 77 (81)
T ss_pred HHhhh
Confidence 76543
No 163
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.3e-08 Score=69.21 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=64.6
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHH---HHHHhhC-CCeEEEEEECcCchhHHhhc--------ccCccceE
Q 044943 10 ETKLNAATRALRLVILYFTATWCGPCRFISPLF---TNLASKY-TKVVFLKVDIDEARDVATRW--------NIGSVPTF 77 (107)
Q Consensus 10 ~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~-~~~~~~~i~~~~~~~~~~~~--------~v~~~P~~ 77 (107)
++++..+...+||+++.+..+||.+|+.|...- .++++.. .+++-++||-++-|++.+.| |-.++|.+
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 678888999999999999999999999998643 3344432 25888899988888887777 35799999
Q ss_pred EEE-eCCeEEEEEcC
Q 044943 78 FFI-KNGKEVDKVVG 91 (107)
Q Consensus 78 ~~~-~~g~~~~~~~g 91 (107)
+|+ .+|++....+-
T Consensus 113 VfLTPd~kPFfagTY 127 (667)
T COG1331 113 VFLTPDGKPFFAGTY 127 (667)
T ss_pred EEECCCCceeeeeee
Confidence 999 68887765443
No 164
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.83 E-value=4.5e-08 Score=50.16 Aligned_cols=67 Identities=16% Similarity=0.322 Sum_probs=50.0
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhc---ccCccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRW---NIGSVPTFFFIKNGKEVDKVVGADKSALERK 100 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 100 (107)
..|+.++||+|++++..|.+ .++.+-.+|+++.+.....+ |...+|.+++ +|. ....|++++.|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 56889999999999999976 36777888888776555444 7789999755 343 24567888887653
No 165
>PRK13189 peroxiredoxin; Provisional
Probab=98.81 E-value=1.5e-07 Score=58.17 Aligned_cols=86 Identities=15% Similarity=0.250 Sum_probs=61.7
Q ss_pred CCcE-EEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC---------------------------chhHHhh
Q 044943 19 ALRL-VILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE---------------------------ARDVATR 68 (107)
Q Consensus 19 ~~k~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~---------------------------~~~~~~~ 68 (107)
.+++ +|++|+++||+.|....+.+.++..++. ++.++.+.+|. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4664 4567899999999999999999888774 67777776542 1245566
Q ss_pred cccC-------ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHHHH
Q 044943 69 WNIG-------SVPTFFFI-KNGKEVDKVV-----GADKSALERKIAQH 104 (107)
Q Consensus 69 ~~v~-------~~P~~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~ 104 (107)
||+. ..|+++++ .+|++..... |.+.+++.+.|+++
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7764 46888888 4888876653 33677787777654
No 166
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.80 E-value=3.6e-08 Score=53.61 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=38.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchh-------HHhhcccCccceEEEEeCCeEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARD-------VATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
++.|..+|||+|.+++..|.+. ++.+..+|++..++ +.+..|...+|.+++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 6679999999999999988775 33344555544322 333346789999843 665554
No 167
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.78 E-value=2.5e-07 Score=56.90 Aligned_cols=86 Identities=15% Similarity=0.256 Sum_probs=63.0
Q ss_pred CCcE-EEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc---------------------------hhHHhh
Q 044943 19 ALRL-VILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA---------------------------RDVATR 68 (107)
Q Consensus 19 ~~k~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~---------------------------~~~~~~ 68 (107)
.+++ +|+.|+++|||.|....+.+.++..++. ++.++.+++|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4666 4679999999999999999999988874 688888876532 245566
Q ss_pred cccC-------ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHHHH
Q 044943 69 WNIG-------SVPTFFFI-KNGKEVDKVV-----GADKSALERKIAQH 104 (107)
Q Consensus 69 ~~v~-------~~P~~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~ 104 (107)
||+. ..|+++++ .+|++..... |.+.+++.+.++++
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7763 57999998 4788877653 22567777776643
No 168
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.77 E-value=2.5e-07 Score=56.47 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=60.0
Q ss_pred cE-EEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc---------------------------hhHHhhcc
Q 044943 21 RL-VILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA---------------------------RDVATRWN 70 (107)
Q Consensus 21 k~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~---------------------------~~~~~~~~ 70 (107)
++ +|+.|+++||+.|....+.+.++.+++. ++.++.++.+.. ..+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 4668999999999999999999988774 578888876531 24566777
Q ss_pred cC----cc----ceEEEE-eCCeEEEEEcC-----CCHHHHHHHHHHH
Q 044943 71 IG----SV----PTFFFI-KNGKEVDKVVG-----ADKSALERKIAQH 104 (107)
Q Consensus 71 v~----~~----P~~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~ 104 (107)
+. +. |.++++ .+|++.....+ .+.+++.+.++++
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 65 23 456666 58888776644 3567777777654
No 169
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.76 E-value=3.3e-07 Score=57.81 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=63.0
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC----------------------------chhHHh
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE----------------------------ARDVAT 67 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~----------------------------~~~~~~ 67 (107)
++++++++|| ++||+.|....+.+.+..+++. ++.++.+..|. ...+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667777776 8999999999999998888774 57777776543 134667
Q ss_pred hcccC-----ccceEEEEe-CCeEEEEEc-----CCCHHHHHHHHHHH
Q 044943 68 RWNIG-----SVPTFFFIK-NGKEVDKVV-----GADKSALERKIAQH 104 (107)
Q Consensus 68 ~~~v~-----~~P~~~~~~-~g~~~~~~~-----g~~~~~l~~~i~~~ 104 (107)
.||+. ..|+++++. +|++..... |.+.+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 77874 589999994 888887652 22677777777654
No 170
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.75 E-value=4.2e-07 Score=49.85 Aligned_cols=79 Identities=16% Similarity=0.292 Sum_probs=61.9
Q ss_pred hCCcEEEEEEeCC--CChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-C
Q 044943 18 RALRLVILYFTAT--WCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-D 93 (107)
Q Consensus 18 ~~~k~~lv~f~~~--~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~ 93 (107)
..+...+++|.++ .++.+....-.+.++.+.+++ +....++......+..+||+..+|+++++++|+.+....|. +
T Consensus 24 ~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 24 AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESSST
T ss_pred hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEEEecCeec
Confidence 3466666666555 356777777788999999886 66667777788899999999999999999999999999987 6
Q ss_pred HHH
Q 044943 94 KSA 96 (107)
Q Consensus 94 ~~~ 96 (107)
.++
T Consensus 104 W~d 106 (107)
T PF07449_consen 104 WAD 106 (107)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 171
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.74 E-value=3e-07 Score=56.58 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=61.9
Q ss_pred CCcEEEE-EEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc---------------------------hhHHhh
Q 044943 19 ALRLVIL-YFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA---------------------------RDVATR 68 (107)
Q Consensus 19 ~~k~~lv-~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~---------------------------~~~~~~ 68 (107)
.+|+++| +|+++||+.|....+.++++..++. ++.++.+++|.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4666554 8899999999999999999988874 688888876532 244556
Q ss_pred cccC-------ccceEEEE-eCCeEEEEEcC-----CCHHHHHHHHHHH
Q 044943 69 WNIG-------SVPTFFFI-KNGKEVDKVVG-----ADKSALERKIAQH 104 (107)
Q Consensus 69 ~~v~-------~~P~~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~ 104 (107)
||+. ..|.++++ .+|++.....+ .+.+++.+.++++
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 6753 36888888 58887776432 3667777777654
No 172
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.70 E-value=1.4e-07 Score=49.20 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=43.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc-h----hHHhhcccCccceEEEEeCCeEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA-R----DVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
++.|+++|||+|+.+...+.++... +.++.++.+.. . .+.+..|..++|+++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 5779999999999999999997663 56777776644 2 344556888999973 366553
No 173
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.69 E-value=7.5e-09 Score=63.30 Aligned_cols=80 Identities=26% Similarity=0.511 Sum_probs=68.9
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALER 99 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~ 99 (107)
.++.|+++|||.|....+.+..++.--. ++.+..+|+..++-+.-+|-+...|+++-.++|. ..++.|. +.+.+..
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe-FrrysgaRdk~dfis 120 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE-FRRYSGARDKNDFIS 120 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc-cccccCcccchhHHH
Confidence 4788999999999999999999877533 5899999999999999999999999999998874 5567788 8888888
Q ss_pred HHHH
Q 044943 100 KIAQ 103 (107)
Q Consensus 100 ~i~~ 103 (107)
++..
T Consensus 121 f~~~ 124 (248)
T KOG0913|consen 121 FEEH 124 (248)
T ss_pred HHHh
Confidence 7753
No 174
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.69 E-value=1.5e-07 Score=49.11 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=43.4
Q ss_pred cEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc---hhHHhhcccCccceEEEEeCCeEE
Q 044943 21 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA---RDVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
+.-++.|+.+||++|++++..|.+. ++.+..+|++.. ..+....|...+|.+++ +|+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 3447789999999999999999753 566666777654 34555568899999964 66654
No 175
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.68 E-value=3.4e-07 Score=55.68 Aligned_cols=85 Identities=15% Similarity=0.287 Sum_probs=60.7
Q ss_pred CCcEEEEEEeC-CCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc----------------------------hhHHh
Q 044943 19 ALRLVILYFTA-TWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA----------------------------RDVAT 67 (107)
Q Consensus 19 ~~k~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~----------------------------~~~~~ 67 (107)
.+++++|+||. +||+.|....+.+.++.+++. ++.++.|+.+.. .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999995 789999999999999888776 678888876522 24566
Q ss_pred hcccC------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHHH
Q 044943 68 RWNIG------SVPTFFFI-KNGKEVDKVVGA-----DKSALERKIAQ 103 (107)
Q Consensus 68 ~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~ 103 (107)
.||+. .+|..+++ ++|+++....+. +.+++.+.|+.
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 67774 36888888 488877765542 44455555543
No 176
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.64 E-value=9.5e-07 Score=46.30 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=58.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeC--CeEEEEEcCC-CHHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKN--GKEVDKVVGA-DKSALERK 100 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~--g~~~~~~~g~-~~~~l~~~ 100 (107)
++.|+.+.|+-|..+...+.++.... .+.+-.+|+++++.+..+|+. .+|.+.+-.. ........+. +.+.+.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67899999999999999999987775 489999999999999999995 8999766321 0112233355 99999888
Q ss_pred HH
Q 044943 101 IA 102 (107)
Q Consensus 101 i~ 102 (107)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.63 E-value=8.9e-07 Score=45.24 Aligned_cols=66 Identities=17% Similarity=0.335 Sum_probs=45.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchh---HHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARD---VATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERK 100 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 100 (107)
++.|+.+|||+|.+++..|.+. ++.+..+|++.... +....|...+|.+++ +|+.+. | .+++.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig---g--~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG---G--SDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe---C--HHHHHHH
Confidence 6789999999999999988862 56666777665442 334458889999843 566543 2 4555554
Q ss_pred H
Q 044943 101 I 101 (107)
Q Consensus 101 i 101 (107)
+
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 3
No 178
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.60 E-value=1.3e-06 Score=51.08 Aligned_cols=80 Identities=29% Similarity=0.428 Sum_probs=58.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhC--C-CeEEEEEECcCc---------------------------------
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKY--T-KVVFLKVDIDEA--------------------------------- 62 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~--~-~~~~~~i~~~~~--------------------------------- 62 (107)
..+++|+.|++..||+|+++.+.+.++.+.+ + .+.+...++...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 5688899999999999999999999888887 3 476666653100
Q ss_pred -----------------------------------hhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHHH
Q 044943 63 -----------------------------------RDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 63 -----------------------------------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 103 (107)
....+++++.++|++++ +|+.+ .|. +.+++.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 02223458899999988 88775 465 99999999875
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.58 E-value=6.4e-07 Score=45.18 Aligned_cols=57 Identities=25% Similarity=0.480 Sum_probs=41.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhH----HhhcccCccceEEEEeCCeEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDV----ATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
++.|+++||++|+.+...+.+.. +.+..+|++..... .+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56799999999999999998754 56777787765543 33346678887743 666554
No 180
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.58 E-value=4.9e-07 Score=53.64 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT 50 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~ 50 (107)
++++.++.|+...||+|+.+.+.+.++..+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 57889999999999999999999999888776
No 181
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.58 E-value=1.1e-07 Score=57.68 Aligned_cols=88 Identities=17% Similarity=0.355 Sum_probs=74.1
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
++.+..+|.+.+...+ +.-.++|++|-+.-+-|..+...+.-|+.+||.+.|+.+-.. ......+|...++|++++|+
T Consensus 142 El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP~LliYk 219 (273)
T KOG3171|consen 142 ELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLPTLLIYK 219 (273)
T ss_pred EeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCceEEEee
Confidence 5778888888887632 356778999999999999999999999999999999998755 44557889999999999999
Q ss_pred CCeEEEEEcC
Q 044943 82 NGKEVDKVVG 91 (107)
Q Consensus 82 ~g~~~~~~~g 91 (107)
+|+.+..+..
T Consensus 220 gGeLIgNFv~ 229 (273)
T KOG3171|consen 220 GGELIGNFVS 229 (273)
T ss_pred CCchhHHHHH
Confidence 9998876543
No 182
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.58 E-value=9.2e-07 Score=45.38 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=41.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHh----hcccC-ccceEEEEeCCeEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVAT----RWNIG-SVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~v~-~~P~~~~~~~g~~~~ 87 (107)
++.|+.++||+|.+++..|++. ++.+-.+|++..++..+ ..+.. .+|++++ +|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEEe
Confidence 5679999999999999999873 56677777776554433 34665 8998754 665543
No 183
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.58 E-value=1.7e-06 Score=46.88 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=44.0
Q ss_pred HHHHHHhCCcEEEEEEe----CCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHH----hhcccCccceEEEEeCC
Q 044943 12 KLNAATRALRLVILYFT----ATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVA----TRWNIGSVPTFFFIKNG 83 (107)
Q Consensus 12 ~~~~~~~~~k~~lv~f~----~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~v~~~P~~~~~~~g 83 (107)
.++.+.++++. +|+-. .+|||+|.+++..|.+. ++.+..+|++..++.. +..|...+|++++ +|
T Consensus 4 ~v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g 75 (97)
T TIGR00365 4 RIKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KG 75 (97)
T ss_pred HHHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CC
Confidence 44555555553 33322 28999999999999874 4556677876655433 3446678999854 56
Q ss_pred eEEE
Q 044943 84 KEVD 87 (107)
Q Consensus 84 ~~~~ 87 (107)
+.+.
T Consensus 76 ~~iG 79 (97)
T TIGR00365 76 EFVG 79 (97)
T ss_pred EEEe
Confidence 5544
No 184
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.56 E-value=6.6e-06 Score=48.96 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=71.0
Q ss_pred HHHHhCCcE-EEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccC--ccceEEEEe--CCeEEE
Q 044943 14 NAATRALRL-VILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIG--SVPTFFFIK--NGKEVD 87 (107)
Q Consensus 14 ~~~~~~~k~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~--~~P~~~~~~--~g~~~~ 87 (107)
......+++ +++.|..........+...++++++.+++ +.|+.+|++..+.+.+.+|+. .+|+++++. +++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~ 167 (184)
T PF13848_consen 88 EKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYY 167 (184)
T ss_dssp HHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE
T ss_pred HHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEc
Confidence 333355655 77777777788889999999999998886 999999999889999999998 999999996 454333
Q ss_pred EEcCC-CHHHHHHHHHH
Q 044943 88 KVVGA-DKSALERKIAQ 103 (107)
Q Consensus 88 ~~~g~-~~~~l~~~i~~ 103 (107)
...+. +.+.+.++++.
T Consensus 168 ~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 168 LPEGEITPESIEKFLND 184 (184)
T ss_dssp --SSCGCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhcC
Confidence 33666 99999999863
No 185
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.55 E-value=5.5e-07 Score=46.80 Aligned_cols=56 Identities=21% Similarity=0.444 Sum_probs=40.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHH----hhcccCccceEEEEeCCeEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVA----TRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~v~~~P~~~~~~~g~~~ 86 (107)
++.|+.++||+|.+++..+++. ++.+-.+|++..+... +..|...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3578999999999999999863 4556666666655443 3347789999844 56544
No 186
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.54 E-value=1.2e-06 Score=44.85 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=43.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchh----HHhhcccCccceEEEEeCCeEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARD----VATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
++.|+.++|++|++++..|++ .++.+..+|++..+. +.+..+...+|++++ +|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 567999999999999999987 356777778876554 445557788999855 566554
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.54 E-value=2.6e-06 Score=59.12 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEe-CCeEE
Q 044943 8 EFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIK-NGKEV 86 (107)
Q Consensus 8 ~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~-~g~~~ 86 (107)
++++.+..+ ++...++.|+.+.|.+|..+...++++++.-+.+.+...|.+...+..++|++...|++.+++ +|+..
T Consensus 356 ~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~ 433 (555)
T TIGR03143 356 QLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYT 433 (555)
T ss_pred HHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCccc
Confidence 455555542 455568788888999999999999999988778888888988899999999999999999994 55432
Q ss_pred -EEEcCC-CHHHHHHHHHHHh
Q 044943 87 -DKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 87 -~~~~g~-~~~~l~~~i~~~~ 105 (107)
-++.|. .-.++..+|..++
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred ceEEEecCccHhHHHHHHHHH
Confidence 466787 7788888887765
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.1e-06 Score=44.92 Aligned_cols=66 Identities=29% Similarity=0.537 Sum_probs=43.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch-----hHHhhc-ccCccceEEEEeCCeEEEEEcCC-CHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR-----DVATRW-NIGSVPTFFFIKNGKEVDKVVGA-DKSA 96 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~-~v~~~P~~~~~~~g~~~~~~~g~-~~~~ 96 (107)
++.|..++||+|.+++..|.+ .++.+..++.+... +..++- |...+|.+++ +|+.+. |. ....
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ig---g~~d~~~ 72 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVG---GCDDLDA 72 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEe---CcccHHH
Confidence 567999999999999999984 35666666665443 233333 7899999876 454332 33 5555
Q ss_pred HHH
Q 044943 97 LER 99 (107)
Q Consensus 97 l~~ 99 (107)
+..
T Consensus 73 ~~~ 75 (80)
T COG0695 73 LEA 75 (80)
T ss_pred HHh
Confidence 443
No 189
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.51 E-value=5.1e-07 Score=54.31 Aligned_cols=94 Identities=16% Similarity=0.323 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
|..++-..+..+ .++-.|+|+.|...-|.|.-+...+++++..||.++|+.+-.... ...|.-...||+++|..|.
T Consensus 97 Sg~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl~VY~~G~ 172 (240)
T KOG3170|consen 97 SGPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTLLVYHHGA 172 (240)
T ss_pred cchHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeEEEeecch
Confidence 455677777776 568899999999999999999999999999999999998874322 3457778999999998776
Q ss_pred EEEEEcC------C--CHHHHHHHHH
Q 044943 85 EVDKVVG------A--DKSALERKIA 102 (107)
Q Consensus 85 ~~~~~~g------~--~~~~l~~~i~ 102 (107)
......| . +.+++..++-
T Consensus 173 lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 173 LKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred HHhheehhhhhcCCcCCHHHHHHHHH
Confidence 5554433 2 5666666654
No 190
>PRK10824 glutaredoxin-4; Provisional
Probab=98.49 E-value=2e-06 Score=47.96 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCcEEEEEEeC---CCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHH----hhcccCccceEEEEe
Q 044943 9 FETKLNAATRALRLVILYFTA---TWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVA----TRWNIGSVPTFFFIK 81 (107)
Q Consensus 9 ~~~~~~~~~~~~k~~lv~f~~---~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~v~~~P~~~~~~ 81 (107)
..+.++.+.++++.++..-.+ ||||+|+++...|.++. +.+..+|++..+++. +.-|-..+|.+++
T Consensus 4 ~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI-- 76 (115)
T PRK10824 4 TIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWV-- 76 (115)
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--
Confidence 445667766666644332221 59999999999998863 334445555554433 3336678888866
Q ss_pred CCeEEE
Q 044943 82 NGKEVD 87 (107)
Q Consensus 82 ~g~~~~ 87 (107)
+|+.++
T Consensus 77 ~G~~IG 82 (115)
T PRK10824 77 DGELVG 82 (115)
T ss_pred CCEEEc
Confidence 676665
No 191
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.40 E-value=3.8e-06 Score=51.40 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=30.0
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHH---HHHHhhCC-CeEEEE
Q 044943 19 ALRLVILYFTATWCGPCRFISPLF---TNLASKYT-KVVFLK 56 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~ 56 (107)
.+++.+|.|++..||+|..+.+.+ ..+.+.++ ++.++.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~ 77 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTK 77 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEE
Confidence 357889999999999999999876 77787776 444443
No 192
>PRK10638 glutaredoxin 3; Provisional
Probab=98.39 E-value=4.3e-06 Score=43.90 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=41.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchh----HHhhcccCccceEEEEeCCeEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARD----VATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
++.|..+||++|++++..+++. ++.+..+|++..++ +.+..|...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678899999999999999873 45566677765543 344457788998744 666554
No 193
>PTZ00062 glutaredoxin; Provisional
Probab=98.38 E-value=8.5e-06 Score=49.79 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHhCCcEEEEEE---eCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhh----cccCccceEE
Q 044943 6 ASEFETKLNAATRALRLVILYF---TATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATR----WNIGSVPTFF 78 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f---~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~v~~~P~~~ 78 (107)
..+..+.++.+.++++.++..- +.|+|++|+++...|++. ++.+..+|+++.++..+. .|-..+|+++
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence 3456777888877777555554 347999999999988863 466777788766654333 3556788876
Q ss_pred EEeCCeEEE
Q 044943 79 FIKNGKEVD 87 (107)
Q Consensus 79 ~~~~g~~~~ 87 (107)
+ +|+.+.
T Consensus 174 I--~G~~IG 180 (204)
T PTZ00062 174 V--NGELIG 180 (204)
T ss_pred E--CCEEEc
Confidence 5 676554
No 194
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.36 E-value=3.1e-05 Score=50.42 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhh------HHHHHHHh---hCCCeEEEEEECcCchhHHhhcccCccce
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFIS------PLFTNLAS---KYTKVVFLKVDIDEARDVATRWNIGSVPT 76 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~------~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~v~~~P~ 76 (107)
..+|++++ ++.+..+|+|+.|-- ..+... ..+-+++. +..++.+..||..+...+++++|+...++
T Consensus 41 eKNfk~~l----Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~S 115 (383)
T PF01216_consen 41 EKNFKRAL----KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGS 115 (383)
T ss_dssp TTTHHHHH----HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTE
T ss_pred hhHHHHHH----HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCc
Confidence 34455544 567888999998863 222221 21222332 23579999999999999999999999999
Q ss_pred EEEEeCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 77 FFFIKNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 77 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
+.+|++|+++... |. +++.|.++|-.++.
T Consensus 116 iyVfkd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 116 IYVFKDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp EEEEETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred EEEEECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 9999999999866 77 99999999987764
No 195
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.2e-05 Score=43.96 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=44.8
Q ss_pred HHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch-hHHh----hcccCccceEEEEeCCeEEE
Q 044943 13 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR-DVAT----RWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 13 ~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~----~~~v~~~P~~~~~~~g~~~~ 87 (107)
+.....+++ +|.|..+||++|++++..+.+ .-.+..++++|-+... ++-+ .-+.+.+|.+++ +|+.++
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 444444444 557999999999998888887 2224678888776443 3322 234568998866 677664
No 196
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.28 E-value=1.2e-05 Score=42.88 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=35.4
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhH----HhhcccCccceEEEEeCCeEE
Q 044943 30 TWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDV----ATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v~~~P~~~~~~~g~~~ 86 (107)
+|||+|.+++..|++.. +.+..+|++..+++ .+..|...+|++++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 69999999999998853 55666676655543 34457789999844 66654
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.07 E-value=3.1e-05 Score=41.04 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=40.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEEC--cCc------------------------------hhHHhhcc
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDI--DEA------------------------------RDVATRWN 70 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~--~~~------------------------------~~~~~~~~ 70 (107)
+..|+++.||+|..+.+.+.++....+ ++.+....+ ... ......+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999865443 455554432 211 23456679
Q ss_pred cCccceEEEE
Q 044943 71 IGSVPTFFFI 80 (107)
Q Consensus 71 v~~~P~~~~~ 80 (107)
+.++|++++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999885
No 198
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.04 E-value=0.00031 Score=40.06 Aligned_cols=101 Identities=20% Similarity=0.331 Sum_probs=68.9
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCC--CC-hhh-hhhhHHHHHHHhhCCC--eEEEEEECcCchhHHhhcccC--c
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTAT--WC-GPC-RFISPLFTNLASKYTK--VVFLKVDIDEARDVATRWNIG--S 73 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~--~C-~~C-~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~v~--~ 73 (107)
++++.+.+++.-. .+..-+|.|.-+ .| +.+ ......+.++++.+++ +.|+.+|.++...+.+.||+. +
T Consensus 6 ~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 6 ELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred EecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 4555555555552 234445545322 23 223 3566788999999873 899999999998899999985 5
Q ss_pred cceEEEEeCCe-EEEEEcCC-CHHHHHHHHHHHhC
Q 044943 74 VPTFFFIKNGK-EVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 74 ~P~~~~~~~g~-~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
+|+++++...+ ......|. +.+.+.++++++++
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 99999985322 22225566 99999999998874
No 199
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.04 E-value=3e-05 Score=52.08 Aligned_cols=57 Identities=21% Similarity=0.441 Sum_probs=42.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHh---h---------cccCccceEEEEeCCeEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVAT---R---------WNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~---------~~v~~~P~~~~~~~g~~~~ 87 (107)
++.|+.+|||+|++++..+.+ .++.+-.+|+++.+...+ + .|...+|++++ +|+.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-----~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig 72 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-----NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG 72 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe
Confidence 678999999999999999888 367777888876653222 2 36778999966 565443
No 200
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.5e-05 Score=48.23 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=63.9
Q ss_pred CcEEEEEEeCC----CChhhhhhhHHHHHHHhhCC---------CeEEEEEECcCchhHHhhcccCccceEEEEe--CCe
Q 044943 20 LRLVILYFTAT----WCGPCRFISPLFTNLASKYT---------KVVFLKVDIDEARDVATRWNIGSVPTFFFIK--NGK 84 (107)
Q Consensus 20 ~k~~lv~f~~~----~C~~C~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~--~g~ 84 (107)
+=.++++|.|- .|.-|..+..++.-++..+. .+-|..||.++.++..+.+++...|.++.|. .|+
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n 139 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGN 139 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccc
Confidence 44567777765 69999999999988887553 2678899999999999999999999999992 333
Q ss_pred EEE------EEcCCCHHHHHHHHHHH
Q 044943 85 EVD------KVVGADKSALERKIAQH 104 (107)
Q Consensus 85 ~~~------~~~g~~~~~l~~~i~~~ 104 (107)
..+ ...|...+.+.+++++.
T Consensus 140 ~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 140 KKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred cccCccchhhhcchhHHHHHHHHHHh
Confidence 222 22244567777777654
No 201
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.93 E-value=0.00042 Score=37.08 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=63.0
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
+.+.++++. ..+.+++++|-|+.++++ .....+.+++..++ ++.|+.+. ..++.+.+++. .|++++++
T Consensus 4 i~s~~~l~~----~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~ 72 (97)
T cd02981 4 LTSKEELEK----FLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFK 72 (97)
T ss_pred cCCHHHHHH----HhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeC
Confidence 455555555 335788889999998887 56677788888875 57777666 45677777765 48888886
Q ss_pred CC-eEEEEEcCC-CHHHHHHHHHH
Q 044943 82 NG-KEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 82 ~g-~~~~~~~g~-~~~~l~~~i~~ 103 (107)
.. .....+.|. +.+.|.+||..
T Consensus 73 ~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 73 PFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CcccCCccCCCCCCHHHHHHHHHh
Confidence 43 334446776 78899999864
No 202
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00073 Score=39.69 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=61.4
Q ss_pred hCCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECc---------------------CchhHHhhcccC-
Q 044943 18 RALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDID---------------------EARDVATRWNIG- 72 (107)
Q Consensus 18 ~~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~---------------------~~~~~~~~~~v~- 72 (107)
-.+++++++|| ..++|.|....-.++....++. +..++.|..| ....+++.||+.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 35778888887 6689999999999988877665 5777777654 345678888873
Q ss_pred -----------ccceEEEE-eCCeEEEEEcCC----CHHHHHHHHHHH
Q 044943 73 -----------SVPTFFFI-KNGKEVDKVVGA----DKSALERKIAQH 104 (107)
Q Consensus 73 -----------~~P~~~~~-~~g~~~~~~~g~----~~~~l~~~i~~~ 104 (107)
..++++++ ++|++...+... ..+++.+.++++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 34566666 678888877544 345666666654
No 203
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.71 E-value=0.00098 Score=36.95 Aligned_cols=87 Identities=10% Similarity=0.034 Sum_probs=63.3
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhh---CCC-eEEEEEECcCchhHHhhcccCc--cceEEEEeC-CeEEEE-E
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASK---YTK-VVFLKVDIDEARDVATRWNIGS--VPTFFFIKN-GKEVDK-V 89 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~---~~~-~~~~~i~~~~~~~~~~~~~v~~--~P~~~~~~~-g~~~~~-~ 89 (107)
..+.+..+.|+.+ ..-......+.++++. +++ +.|+.+|.+......+-||+.. +|.+.+... +..... .
T Consensus 14 ~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~ 91 (111)
T cd03072 14 EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDF 91 (111)
T ss_pred cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCC
Confidence 3455555555522 3346778888999999 875 9999999998887899999986 999988853 211121 3
Q ss_pred cCC-CHHHHHHHHHHHhC
Q 044943 90 VGA-DKSALERKIAQHAG 106 (107)
Q Consensus 90 ~g~-~~~~l~~~i~~~~~ 106 (107)
.+. +.+.+.++++++++
T Consensus 92 ~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 92 EDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred ccccCHHHHHHHHHHHhc
Confidence 355 89999999998764
No 204
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.67 E-value=0.00076 Score=40.45 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=27.3
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEE
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYTKVVFL 55 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 55 (107)
.+.+|+...||+|....+.+.++.+.++++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~ 33 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIE 33 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 367899999999999999999999988553333
No 205
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.64 E-value=0.00045 Score=43.03 Aligned_cols=93 Identities=24% Similarity=0.387 Sum_probs=62.9
Q ss_pred HHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEEC------------------cCchhHHhhc---
Q 044943 12 KLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDI------------------DEARDVATRW--- 69 (107)
Q Consensus 12 ~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~------------------~~~~~~~~~~--- 69 (107)
.+....+.++|.+++|.+-+||+=..-...++++++++.+ ..|+.|-+ .++..+.++.
T Consensus 94 ~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA 173 (237)
T PF00837_consen 94 RILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAA 173 (237)
T ss_pred eHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHH
Confidence 3444557899999999999999999999999999999885 33443321 1111111111
Q ss_pred -----------------------ccCccc-eEEEEeCCeEEEEE-cC---CCHHHHHHHHHHH
Q 044943 70 -----------------------NIGSVP-TFFFIKNGKEVDKV-VG---ADKSALERKIAQH 104 (107)
Q Consensus 70 -----------------------~v~~~P-~~~~~~~g~~~~~~-~g---~~~~~l~~~i~~~ 104 (107)
.-..+| .++++++|+++... .| +.+++++++++++
T Consensus 174 ~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 174 KLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred HHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 013677 44455899988764 33 3899999999875
No 206
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.64 E-value=0.0023 Score=34.49 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEE
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
+++.+.+... ++...++.|..+. .+|..+...++++++.-+.+.+...+.+. ..|++.+..+|+..
T Consensus 8 ~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~ 73 (94)
T cd02974 8 QQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDT 73 (94)
T ss_pred HHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcc
Confidence 4555556532 3455555666655 99999999999999987777665444321 47999998766332
Q ss_pred -EEEcCC-CHHHHHHHHHHH
Q 044943 87 -DKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 87 -~~~~g~-~~~~l~~~i~~~ 104 (107)
-++.|. ..-++..+|.++
T Consensus 74 gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 74 GIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred cEEEEecCCchhHHHHHHHh
Confidence 456687 778888887765
No 207
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.55 E-value=0.0016 Score=36.16 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=53.4
Q ss_pred hhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCc----cceEEEEeCCeEEEEEc-CC-CHHHHHHHHHHH
Q 044943 33 GPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGS----VPTFFFIKNGKEVDKVV-GA-DKSALERKIAQH 104 (107)
Q Consensus 33 ~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~----~P~~~~~~~g~~~~~~~-g~-~~~~l~~~i~~~ 104 (107)
..-......+.++++.++ .+.|+.+|.++.....+.||+.. +|.+.+........... .. +.+.|.+++++.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 445678889999999998 49999999998877889999974 99999885322111111 23 678888888765
No 208
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.54 E-value=0.004 Score=35.01 Aligned_cols=89 Identities=18% Similarity=0.334 Sum_probs=55.5
Q ss_pred HHHhCCcEEEEEEeCCCChhhhhhhHHHHHHH----hhCCCeEEEEEECc-----CchhHHhhccc--CccceEEEEe-C
Q 044943 15 AATRALRLVILYFTATWCGPCRFISPLFTNLA----SKYTKVVFLKVDID-----EARDVATRWNI--GSVPTFFFIK-N 82 (107)
Q Consensus 15 ~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~----~~~~~~~~~~i~~~-----~~~~~~~~~~v--~~~P~~~~~~-~ 82 (107)
....+.+.+||.|=... |+-.+ +..+.+++ ..-+++-+..+.+. ++.+++++|++ ..+|.+.+|. +
T Consensus 16 Kvi~kf~~~LVKFD~ay-PyGeK-hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~ 93 (126)
T PF07912_consen 16 KVIPKFKYVLVKFDVAY-PYGEK-HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGD 93 (126)
T ss_dssp HHGGGSSEEEEEEEESS---CHH-HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESS
T ss_pred heeccCceEEEEEeccC-CCcch-HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCC
Confidence 33456799999994332 22222 22334444 34457888888764 56799999999 5789999996 3
Q ss_pred CeEEEEE--cCC-CHHHHHHHHHHHh
Q 044943 83 GKEVDKV--VGA-DKSALERKIAQHA 105 (107)
Q Consensus 83 g~~~~~~--~g~-~~~~l~~~i~~~~ 105 (107)
....-++ .|. +.+.|++|+++..
T Consensus 94 ~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 94 KEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp TTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred CCCCccCCccCCccHHHHHHHHHhCC
Confidence 3344444 565 8999999998764
No 209
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.52 E-value=0.0005 Score=41.16 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCC
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTK 51 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~ 51 (107)
.|..|.|++|-...|.+.++...+++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58999999999999999999999884
No 210
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0012 Score=41.32 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=27.7
Q ss_pred hHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 64 DVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
.+...+|+.++|++++. |+ .+.|. +.+++.+.|....
T Consensus 206 ~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHhh
Confidence 34556799999999873 33 56687 7899999887654
No 211
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.47 E-value=0.006 Score=35.10 Aligned_cols=97 Identities=12% Similarity=0.236 Sum_probs=68.5
Q ss_pred hhHHHHHHHH----HhCCcEEEEEEeCCCCh----hhhhhh--HHHHHHHhhCCCeEEEEEECcCch-------------
Q 044943 7 SEFETKLNAA----TRALRLVILYFTATWCG----PCRFIS--PLFTNLASKYTKVVFLKVDIDEAR------------- 63 (107)
Q Consensus 7 ~~~~~~~~~~----~~~~k~~lv~f~~~~C~----~C~~~~--~~~~~~~~~~~~~~~~~i~~~~~~------------- 63 (107)
..++++++.+ .++.|+.+|+.+++.-+ .|+.+. +.+.++.+. ++.+..-|+....
T Consensus 4 Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~ 81 (136)
T cd02990 4 GSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHF 81 (136)
T ss_pred CcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhh
Confidence 4577888888 88899999999998764 555543 344444443 5667777765432
Q ss_pred -----hHHhhcccCccceEEEEe-C---CeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 64 -----DVATRWNIGSVPTFFFIK-N---GKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 64 -----~~~~~~~v~~~P~~~~~~-~---g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
...+.++...+|.+.++. . -.++.+..|. +++++...+.+..
T Consensus 82 g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 82 GSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred hHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 234556789999998882 2 2678889999 9999998887754
No 212
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.43 E-value=0.0019 Score=37.59 Aligned_cols=57 Identities=16% Similarity=0.369 Sum_probs=40.3
Q ss_pred EEEEeCC------CChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhH----Hhhccc----CccceEEEEeCCeEEE
Q 044943 24 ILYFTAT------WCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDV----ATRWNI----GSVPTFFFIKNGKEVD 87 (107)
Q Consensus 24 lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v----~~~P~~~~~~~g~~~~ 87 (107)
++.|+++ +|++|++++..|+++ ++.+-.+|++..+++ .+..+. ..+|++++ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 4566777 999999999999874 467788888766543 333444 67888865 566554
No 213
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=97.20 E-value=0.0009 Score=46.38 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHH------HHHHHhhCCCeEEEEEECcCchhHHh--------hcc
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPL------FTNLASKYTKVVFLKVDIDEARDVAT--------RWN 70 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~ 70 (107)
+..-=+++++.+.+++||+++...-+.|.+|..|..+ +.++..+ ++.-+.||-++-|++.+ ..|
T Consensus 97 wypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilne--nfv~ikVDREERPDVDK~YM~Fv~assg 174 (786)
T KOG2244|consen 97 WYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE--NFVKIKVDREERPDVDKLYMAFVVASSG 174 (786)
T ss_pred cCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhh--hhhhhccChhhcCchHHHHHHHHHhccC
Confidence 3334478899999999999999999999999998853 3333333 45555666655555554 347
Q ss_pred cCccceEEEE
Q 044943 71 IGSVPTFFFI 80 (107)
Q Consensus 71 v~~~P~~~~~ 80 (107)
-.++|.-+++
T Consensus 175 ~GGWPmsV~L 184 (786)
T KOG2244|consen 175 GGGWPMSVFL 184 (786)
T ss_pred CCCCceeEEe
Confidence 7899999998
No 214
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=97.19 E-value=0.0091 Score=40.28 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhH-HHH-HHHhhC--CCeEEEEEECc--CchhHHhhcccCccceEEEE
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISP-LFT-NLASKY--TKVVFLKVDID--EARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~-~~~-~~~~~~--~~~~~~~i~~~--~~~~~~~~~~v~~~P~~~~~ 80 (107)
..+-+++..+..+ +.++|.|.+-.-...+++.. .+. ...... ..+..+.|+.. ....+..-|.+..+|.++++
T Consensus 6 GnipeAIa~aK~k-kalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffI 84 (506)
T KOG2507|consen 6 GNIPEAIAEAKGK-KALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFI 84 (506)
T ss_pred cchHHHHHHhhcC-CeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeee
Confidence 3566778887554 44555555555566666652 222 222221 13455555543 23467778899999999999
Q ss_pred -eCCeEEEEEcCC-CHHHHHHHHHHH
Q 044943 81 -KNGKEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 81 -~~g~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
..|..+....|+ +.++|...|++.
T Consensus 85 g~sGtpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 85 GFSGTPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred cCCCceeEEeeccccHHHHHHHHHHH
Confidence 689999999999 999999888764
No 215
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.17 E-value=0.015 Score=40.47 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEE
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
+++.+.+.. -.+++-+.++.+.|.+|..+...++++++.-+.+.+...+.+ ...|++.+..+|+..
T Consensus 8 ~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~ 73 (517)
T PRK15317 8 TQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDT 73 (517)
T ss_pred HHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccc
Confidence 445555543 345555555555899999999999999998877776443321 247999888766443
Q ss_pred -EEEcCC-CHHHHHHHHHHHh
Q 044943 87 -DKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 87 -~~~~g~-~~~~l~~~i~~~~ 105 (107)
-++.|. .-.++..+|..++
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~ 94 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALL 94 (517)
T ss_pred eEEEEecCccHHHHHHHHHHH
Confidence 466787 7788888887664
No 216
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.95 E-value=0.032 Score=38.86 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeE-
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKE- 85 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~- 85 (107)
+++.+.+.. -.+++-+.++.+.|++|..+...++++++.-+.+.+...+.+. ...|++.+..+|+.
T Consensus 8 ~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~ 74 (515)
T TIGR03140 8 AQLKSYLAS---LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADT 74 (515)
T ss_pred HHHHHHHHh---cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCccc
Confidence 455555653 3455545455447999999999999999988777775544322 34599988876653
Q ss_pred EEEEcCC-CHHHHHHHHHHHh
Q 044943 86 VDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 86 ~~~~~g~-~~~~l~~~i~~~~ 105 (107)
--++.|. .-.++..+|..++
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~ 95 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAIL 95 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHH
Confidence 3466787 7788888877654
No 217
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.94 E-value=0.0043 Score=36.39 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCcEEEEEEeCCCChhhhhh-hHHHHHHHhhCC--Ce-EEEEEECc
Q 044943 19 ALRLVILYFTATWCGPCRFI-SPLFTNLASKYT--KV-VFLKVDID 60 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~--~~-~~~~i~~~ 60 (107)
.+..+++.|.+.|||.|... .+.+++...++. ++ .++.+..+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 34556666678899999998 888888777664 45 46766653
No 218
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.039 Score=32.37 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=59.7
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc-----------hhHHh-hcccC-----------
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA-----------RDVAT-RWNIG----------- 72 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~-----------~~~~~-~~~v~----------- 72 (107)
-.+|++||.=.|+-|+..-+ ...|+.|.++|. ++.++.+.|++. ..+|+ .||+.
T Consensus 23 ~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred hCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 47999999999999988763 345666666665 477777766432 12222 23220
Q ss_pred -----------------------ccc--eEEEEeCCeEEEEEcCC-CHHHHHHHHHHHhCC
Q 044943 73 -----------------------SVP--TFFFIKNGKEVDKVVGA-DKSALERKIAQHAGQ 107 (107)
Q Consensus 73 -----------------------~~P--~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 107 (107)
.|- -+++-++|+++.|+... .|+++...|++.++.
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 112 23333799999999888 999999999988763
No 219
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.73 E-value=0.013 Score=29.94 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=48.6
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
.+..|-+...+.+++....+.++-+++. .+.+-.+|+.+.+.+++.+++-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4555666677999999999999887764 488889999999999999999999998654
No 220
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.70 E-value=0.053 Score=33.82 Aligned_cols=37 Identities=35% Similarity=0.435 Sum_probs=28.2
Q ss_pred HhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 66 ATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 66 ~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
++++||+++|++++ .+| ....|. +++.+...|++.++
T Consensus 177 A~e~gI~gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 177 AQEMGIRGVPTFVF-DGK---YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHCCCccCceEEE-cCc---EeecCCCCHHHHHHHHHHHHh
Confidence 34468899999988 333 345588 99999999988775
No 221
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.68 E-value=0.029 Score=33.27 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=49.2
Q ss_pred hhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCC-eEEEEEcC--CCHHHHHHHHHHHh
Q 044943 38 ISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNG-KEVDKVVG--ADKSALERKIAQHA 105 (107)
Q Consensus 38 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~~~~g--~~~~~l~~~i~~~~ 105 (107)
....+.++++.+. ++.|+.+. ..++++.+++.. |++++++.+ +....+.| .+.+.|.+||....
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 4556778888877 58888887 677899999999 999999763 34455666 39999999998753
No 222
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.68 E-value=0.0031 Score=34.48 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=41.3
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc----hhHHhhcccCccceEEEE-eCCeEEEE-----EcCCCH
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA----RDVATRWNIGSVPTFFFI-KNGKEVDK-----VVGADK 94 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~v~~~P~~~~~-~~g~~~~~-----~~g~~~ 94 (107)
..|+.++|++|+++...+++ .++.+-.+|+.+. .++.+..+..+.+.--++ ..|..... ..+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~ 76 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-----HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSD 76 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCH
Confidence 57899999999999888877 3555666666432 233333333333222222 23322221 123367
Q ss_pred HHHHHHHHH
Q 044943 95 SALERKIAQ 103 (107)
Q Consensus 95 ~~l~~~i~~ 103 (107)
+++.++|.+
T Consensus 77 ~e~~~~l~~ 85 (105)
T cd02977 77 EEALELMAE 85 (105)
T ss_pred HHHHHHHHh
Confidence 777777654
No 223
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.64 E-value=0.039 Score=30.10 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=64.4
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcC--chhHHhhcccC----ccc
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDE--ARDVATRWNIG----SVP 75 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~~~~~~~~v~----~~P 75 (107)
|.+..+|+..+ ...+.|+|.|..+- ..-......+.+.++...+ =.+..|||.. ...+|+++.+. .-|
T Consensus 6 i~d~KdfKKLL----RTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 6 ISDHKDFKKLL----RTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccchHHHHHHH----hhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 55566666655 45677777776664 3333444567777777665 6777888876 77899999987 455
Q ss_pred e-EEEEeCCeEEEEEcCC-CHHHHHHHHHH
Q 044943 76 T-FFFIKNGKEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 76 ~-~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 103 (107)
. +.-|++|.--..+... +...+..+++.
T Consensus 81 ~~LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCCCccccccchhhHHHHHHHhhC
Confidence 3 3344788777777666 77788777753
No 224
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=96.62 E-value=0.027 Score=28.69 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=43.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEe--CCeEEEEEcCCCHHHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIK--NGKEVDKVVGADKSALERKI 101 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~--~g~~~~~~~g~~~~~l~~~i 101 (107)
+..|+.+.|++|++++-.+.+..-. +....++.....++ +.-+...+|+++.-. +|..+. ....+.+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHHHH
Confidence 3467889999999999877764332 22333333222233 334567899886532 232221 466677777
Q ss_pred HHHhC
Q 044943 102 AQHAG 106 (107)
Q Consensus 102 ~~~~~ 106 (107)
++.+|
T Consensus 73 ~~~~~ 77 (77)
T cd03040 73 KTYLG 77 (77)
T ss_pred HHHcC
Confidence 77654
No 225
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.59 E-value=0.0009 Score=43.13 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=65.0
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEE-CcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHH
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVD-IDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSAL 97 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 97 (107)
..++-.-||++|||..+...+..+-....++.+....++ ...-+....+|++.+.|++.+... .....+.|. .-.++
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLASL 154 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHHHH
Confidence 568888999999999999999999888888766655543 234567788999999999988743 344455566 77888
Q ss_pred HHHHHHHh
Q 044943 98 ERKIAQHA 105 (107)
Q Consensus 98 ~~~i~~~~ 105 (107)
.++..+++
T Consensus 155 v~fy~~i~ 162 (319)
T KOG2640|consen 155 VNFYTEIT 162 (319)
T ss_pred HHHHHhhc
Confidence 87777665
No 226
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.53 E-value=0.061 Score=31.02 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=53.8
Q ss_pred cEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccC----ccceEEEEeCCeEEEEEcCC-CHH
Q 044943 21 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIG----SVPTFFFIKNGKEVDKVVGA-DKS 95 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~----~~P~~~~~~~g~~~~~~~g~-~~~ 95 (107)
..-++.+++|+|+=|......++. .++.+-.+..++...+.++++|. +-=|.++ +|..++ |- ..+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vE---GHVPa~ 94 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVE---GHVPAE 94 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEe---ccCCHH
Confidence 345788999999999998888773 46778888888888888888875 4444444 676665 55 677
Q ss_pred HHHHHHHH
Q 044943 96 ALERKIAQ 103 (107)
Q Consensus 96 ~l~~~i~~ 103 (107)
.+..++++
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 77777654
No 227
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.40 E-value=0.1 Score=32.16 Aligned_cols=89 Identities=18% Similarity=0.298 Sum_probs=58.5
Q ss_pred hCCcEEEEEEeCCCCh-hhhhhhHHHHHHHhhCC-----C--eEEEEEECcCc---------------------------
Q 044943 18 RALRLVILYFTATWCG-PCRFISPLFTNLASKYT-----K--VVFLKVDIDEA--------------------------- 62 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~-~C~~~~~~~~~~~~~~~-----~--~~~~~i~~~~~--------------------------- 62 (107)
-++++++|+|.-..|| .|-.+...+..+..... + +.++.+|-+..
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~ 144 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQI 144 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHH
Confidence 3799999999989996 68888877776665543 3 45555554321
Q ss_pred hhHHhhcccCc---------------cceEEEE-eCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 63 RDVATRWNIGS---------------VPTFFFI-KNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 63 ~~~~~~~~v~~---------------~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
.++++.|++.. ...++++ .+|+....+.+. +++++.+.+++++.
T Consensus 145 ~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 145 EEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 13344444431 2233333 489988888777 88899988888764
No 228
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=96.29 E-value=0.032 Score=35.33 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=39.4
Q ss_pred HhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 17 TRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 17 ~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
...||+.++++.+.|||+|...+=.|-....++.++.+. .......+ .-..+|+++|.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~-~~~S~~~d-----~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLE-YHYSDPYD-----NYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeE-EeecCccc-----CCCCCCeEEEe
Confidence 357999999999999999999887776666777777333 32222210 12367777665
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.25 E-value=0.032 Score=28.00 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=38.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhcccCccceEEEEeCCeE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
+.|+.++|++|++.+-.+.+..-. +.+..+|... .+++.+..+...+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 357789999999998887764333 4555666542 345666667789999854 34544
No 230
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.056 Score=36.24 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=62.2
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHH
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSAL 97 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 97 (107)
++..-+=-|++-.|..|-.+-+.++-++-..|++....+|-....+--+.-++.++|++++ +|+.... |. +.+++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg~--GRmtleei 190 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFGQ--GRMTLEEI 190 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhhcc--cceeHHHH
Confidence 5667788888999999999999999999999999999999766555555668999999866 5554432 55 66666
Q ss_pred HHHHH
Q 044943 98 ERKIA 102 (107)
Q Consensus 98 ~~~i~ 102 (107)
.+.|.
T Consensus 191 laki~ 195 (520)
T COG3634 191 LAKID 195 (520)
T ss_pred HHHhc
Confidence 66554
No 231
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.14 E-value=0.036 Score=29.38 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=55.3
Q ss_pred cEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC
Q 044943 21 RLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA 92 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 92 (107)
.+++=.|.+..-+.+++....+.++-+.+. .+.+-.+|+.+.|.+++.+.+-.+||++-... ....+..|-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcceeecc
Confidence 456666778888999999999998877653 37778889999999999999999999876532 344555564
No 232
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.13 E-value=0.034 Score=30.39 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=57.5
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA 92 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 92 (107)
.+.+++=.|.+..-+.+++....+.++-+.+. .+.+-.+|+.+.+.+++.+.+-.+||++-... ....+..|-
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P-~P~rriiGD 78 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILP-PPVRKIIGD 78 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCC-CCcceeecc
Confidence 34677777888888999999999999877653 37788889999999999999999999766532 344555564
No 233
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.12 E-value=0.012 Score=32.56 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=33.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch----hHHhhcccCccceEEEE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR----DVATRWNIGSVPTFFFI 80 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~v~~~P~~~~~ 80 (107)
..|+.++|+.|+++...+++ .++.+-.+|+.+.+ ++..-.+..+.|..-++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~ 56 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFF 56 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHH
Confidence 46899999999999988877 35666677665433 33343444455544444
No 234
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.08 E-value=0.018 Score=32.87 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=23.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID 60 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~ 60 (107)
+..|+.++|+.|+++...+.+. ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeecc
Confidence 4578999999999998877663 4555555543
No 235
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.02 E-value=0.099 Score=28.33 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=52.6
Q ss_pred HHHHh-CCcEEEEEEeCCCChhhhhhhHHHHHHHhhC-CCeEEEEEECcCchhHHhhcccCccceEEEEeC-CeEEEEE-
Q 044943 14 NAATR-ALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKN-GKEVDKV- 89 (107)
Q Consensus 14 ~~~~~-~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~-g~~~~~~- 89 (107)
+.+.+ .+..++|-|+.+--+ .....+.+++..+ .++.|.... ...+...+++. .|.++++++ ......+
T Consensus 12 e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~ 84 (102)
T cd03066 12 QAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEEPVTIP 84 (102)
T ss_pred HHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCCCcccC
Confidence 33344 566677767665333 3555677777777 457775433 35667777764 688888854 2222335
Q ss_pred cCC-CHHHHHHHHHHH
Q 044943 90 VGA-DKSALERKIAQH 104 (107)
Q Consensus 90 ~g~-~~~~l~~~i~~~ 104 (107)
.|. +.+.|.+||...
T Consensus 85 ~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 85 DKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 566 889999999754
No 236
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.01 E-value=0.019 Score=32.01 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=26.0
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR 63 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 63 (107)
..|+.++|+.|+++...+++ .++.+..+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence 46899999999999988887 35666777765443
No 237
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.012 Score=30.22 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=37.4
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC------------cCchhH--HhhcccCccceEEEEeCCeEEE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI------------DEARDV--ATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~------------~~~~~~--~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
+.|++..||.|..+...++++.-.| .++.|-- |..+++ .+..|--|+|.+++ .+|+++-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y---d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY---DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc---eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 5799999999999988887765444 2333311 122222 24456679999866 5666554
No 238
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.84 E-value=0.097 Score=26.74 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=39.6
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC----chhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE----ARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERK 100 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 100 (107)
..++.++|++|++++-.+.+.. +.+-.++++. .+++.+..+...+|+++.-.+|..+ .....+.+.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l-----~es~~I~~y 72 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM-----FESADIVKY 72 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-----CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE-----EcHHHHHHH
Confidence 4577789999999988887743 3333334332 2344444466789987542233222 245555555
Q ss_pred HHH
Q 044943 101 IAQ 103 (107)
Q Consensus 101 i~~ 103 (107)
+++
T Consensus 73 L~~ 75 (77)
T cd03041 73 LFK 75 (77)
T ss_pred HHH
Confidence 544
No 239
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.76 E-value=0.022 Score=31.68 Aligned_cols=30 Identities=23% Similarity=0.571 Sum_probs=27.0
Q ss_pred cEEEEEEeCCCChhhhhhhHHHHHHHhhCC
Q 044943 21 RLVILYFTATWCGPCRFISPLFTNLASKYT 50 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~ 50 (107)
|.+++.|..|.|+.|+.....+.++..+|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 567899999999999999999998888875
No 240
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.14 Score=30.43 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=62.7
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCc--------hh----HHhhccc------------
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEA--------RD----VATRWNI------------ 71 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~--------~~----~~~~~~v------------ 71 (107)
-.|+++||.=-|+.|+.-..--..++.+.+.|. ++.++...|++. .+ ++.+|+.
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG 111 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNG 111 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecCC
Confidence 478999999999999999988888999888885 588888877432 11 2233322
Q ss_pred -----------Cc------------cceEEEEeCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 72 -----------GS------------VPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 72 -----------~~------------~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
.. +--+++-++|.++.|+... ++..+..-|+++++
T Consensus 112 ~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 112 DNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred CCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 01 1123333799999999877 78788877887765
No 241
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=95.66 E-value=0.19 Score=28.79 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
..+.+++.+.++.+.+-++++.=..+. .=+.....+.++...... .-+.| +|.+.++|+|..+|++++.+++.
T Consensus 10 P~~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~~~-~~v~I----dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 10 PEPLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDGGK-SGVQI----DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred CHHHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcCCC-CcEEE----ChHHHhhcCceEcCEEEEECCCC
Confidence 345677777777666655444323332 223444444454443322 12223 49999999999999999997663
Q ss_pred -----------EEEEEcCC-CHHHHHHHHH
Q 044943 85 -----------EVDKVVGA-DKSALERKIA 102 (107)
Q Consensus 85 -----------~~~~~~g~-~~~~l~~~i~ 102 (107)
......|- +-+.-.+.|.
T Consensus 83 ~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 83 ACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred cccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 24455566 6655555554
No 242
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.52 E-value=0.027 Score=30.91 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=24.0
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE 61 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~ 61 (107)
..|+.++|+.|++++..+.+- ++.+-.+|+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc
Confidence 578999999999999888763 55555666543
No 243
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=95.47 E-value=0.31 Score=30.03 Aligned_cols=77 Identities=30% Similarity=0.498 Sum_probs=48.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc------------------hhHHhhccc--CccceEEEEeCC
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA------------------RDVATRWNI--GSVPTFFFIKNG 83 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------~~~~~~~~v--~~~P~~~~~~~g 83 (107)
+=.|++..|+.|-.....|.+++.+ +++..+...+|-. ..+.+.++. -.+|.+++ +|
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 4468888999999999999999999 5777777765411 123333443 36899887 66
Q ss_pred eEEEEEcCCCHHHHHHHHHHHh
Q 044943 84 KEVDKVVGADKSALERKIAQHA 105 (107)
Q Consensus 84 ~~~~~~~g~~~~~l~~~i~~~~ 105 (107)
+.- ..|.+...+...|.+..
T Consensus 79 ~~~--~~g~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 79 REH--RVGSDRAAVEAAIQAAR 98 (202)
T ss_dssp TEE--EETT-HHHHHHHHHHHH
T ss_pred eee--eeccCHHHHHHHHHHhh
Confidence 544 34778888888887653
No 244
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.41 E-value=0.041 Score=26.72 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=33.6
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCch--hHHhhcccCccceEEE
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR--DVATRWNIGSVPTFFF 79 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~P~~~~ 79 (107)
.|+.++|+.|++++-.+....-. +....++..... ++.+..+...+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57788999999988888775333 344444443222 2455667789998754
No 245
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.34 E-value=0.21 Score=27.20 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=55.3
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
+.+.++++..+ ...+.++|-|+.+--. .....+.+++..++ ++.|.... ...+...+++ .|.+++|+
T Consensus 5 i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 5 LRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred cCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEe
Confidence 44555554433 4566777777665333 35566777777774 57775444 3566778888 67777772
Q ss_pred C-------CeEEEEEcCC-CHHHHHHHHHHH
Q 044943 82 N-------GKEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 82 ~-------g~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
. ......+.|. +.+.|.+||...
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 1 1111235676 888999998764
No 246
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.28 E-value=0.069 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=23.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID 60 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~ 60 (107)
+..|+.++|+.|+++...+++. ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecC
Confidence 4568899999999999888772 4555556554
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=95.27 E-value=0.082 Score=26.36 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=34.8
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc----CchhHHhhcccCccceEEE
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID----EARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~~~P~~~~ 79 (107)
.|+.++|++|++++-.+....-. +....++.. ..+++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 57788999999999988776433 334445432 2345666667778999865
No 248
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.23 E-value=0.057 Score=27.01 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=32.1
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCe
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
.++.++|++|++.+-.+....-. +..+.++........+..+-..+|.+.. .+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILEK-DDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEEe-CCCe
Confidence 46778999999998887764332 2333444333223333445567888743 3343
No 249
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.14 E-value=0.061 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.491 Sum_probs=22.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
+..|+.++|+.|+++...+++- ++.+-.+|+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di 32 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEe
Confidence 5678999999999998777663 444444444
No 250
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=95.02 E-value=0.3 Score=27.21 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=41.9
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHH---HHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEe
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTN---LASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~ 81 (107)
..+.+.+.+.++.+.+-+ +|.=.-..- .+.+.++. +....+...-+.| +|.+.++|+|..+|++++.+
T Consensus 9 P~~~L~~l~~~a~~~~~~-~V~RG~~~g----~~~~t~~~~~~l~~~~~~~~~v~I----dP~~F~~y~I~~VPa~V~~~ 79 (113)
T PF09673_consen 9 PDASLRNLLKQAERAGVV-VVFRGFPDG----SFKPTAKAIQELLRKDDPCPGVQI----DPRLFRQYNITAVPAFVVVK 79 (113)
T ss_pred CHHHHHHHHHHHHhCCcE-EEEECCCCC----CHHHHHHHHHHHhhccCCCcceeE----ChhHHhhCCceEcCEEEEEc
Confidence 345677777777665433 333322222 55555444 4444332323333 39999999999999999986
Q ss_pred C
Q 044943 82 N 82 (107)
Q Consensus 82 ~ 82 (107)
+
T Consensus 80 ~ 80 (113)
T PF09673_consen 80 D 80 (113)
T ss_pred C
Confidence 6
No 251
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=94.96 E-value=0.17 Score=25.18 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=33.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhcccCccceEE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNIGSVPTFF 78 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~ 78 (107)
..|+.++|++|++.+-.+....-. +....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457789999999998887664333 3334444432 34555556677999764
No 252
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=94.79 E-value=0.26 Score=31.03 Aligned_cols=81 Identities=28% Similarity=0.343 Sum_probs=54.9
Q ss_pred cEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc------------------CchhHHhhcccCccceEEEEeC
Q 044943 21 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID------------------EARDVATRWNIGSVPTFFFIKN 82 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~------------------~~~~~~~~~~v~~~P~~~~~~~ 82 (107)
.-|+=.|++..|..|-.....+.+++.+ +++.-+...+| .-..+.+.|+..+++|=-.+-+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 4556667888999999999999999988 56554444432 1234566677776655555556
Q ss_pred CeEEEEEcCCCHHHHHHHHHHH
Q 044943 83 GKEVDKVVGADKSALERKIAQH 104 (107)
Q Consensus 83 g~~~~~~~g~~~~~l~~~i~~~ 104 (107)
|+...+ |.++..+...|+..
T Consensus 121 Gr~~~~--Gad~~~i~~~i~a~ 140 (261)
T COG5429 121 GRVHAN--GADPGAIEDAIAAM 140 (261)
T ss_pred chhhhc--CCCHHHHHHHHHHh
Confidence 665443 66778888777654
No 253
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.58 E-value=0.096 Score=29.98 Aligned_cols=31 Identities=13% Similarity=0.415 Sum_probs=22.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
+..|+.++|+.|+++..-+.+ .++.+-.+|+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~~i~~~~~d~ 32 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-----HQLSYKEQNL 32 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEEC
Confidence 457889999999998877766 2455555554
No 254
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.4 Score=26.17 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhccc-CccceEEEE-eCCeE
Q 044943 8 EFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNI-GSVPTFFFI-KNGKE 85 (107)
Q Consensus 8 ~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v-~~~P~~~~~-~~g~~ 85 (107)
+..+.+++..+.++.++-+-.+|--|.|=--...+.-|... .-+.|..+|+-.++++.+.... ..|||+==+ -+|+.
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC-GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc-CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 44566777777777777766766545544333333333333 1278889998888888775533 466666433 47766
Q ss_pred EE
Q 044943 86 VD 87 (107)
Q Consensus 86 ~~ 87 (107)
+.
T Consensus 82 vG 83 (105)
T COG0278 82 VG 83 (105)
T ss_pred ec
Confidence 65
No 255
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=94.17 E-value=0.23 Score=29.68 Aligned_cols=42 Identities=21% Similarity=0.451 Sum_probs=29.9
Q ss_pred CCcEEEEEEeCCCC-hhhhhhhHHHHHHHhhC----CCeEEEEEECc
Q 044943 19 ALRLVILYFTATWC-GPCRFISPLFTNLASKY----TKVVFLKVDID 60 (107)
Q Consensus 19 ~~k~~lv~f~~~~C-~~C~~~~~~~~~~~~~~----~~~~~~~i~~~ 60 (107)
.||+++|.|.-..| ..|-.+...+.++.+.. .++.++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 68999999999999 57887777776665533 25677766654
No 256
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.16 Score=31.12 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=34.5
Q ss_pred hHHhhcccCccceEEEEeCCeEEEEEcC--C-CHHHHHHHHHHHh
Q 044943 64 DVATRWNIGSVPTFFFIKNGKEVDKVVG--A-DKSALERKIAQHA 105 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g--~-~~~~l~~~i~~~~ 105 (107)
.+++++++.++|++++-++|+..--..| + +++.+...+...+
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 4677889999999999999987777777 4 8888888887654
No 257
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=94.14 E-value=0.029 Score=29.47 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=42.5
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhcccCccceEE
Q 044943 27 FTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFF 78 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~ 78 (107)
|-+..-+.++++...++.+.+.+- .+.+-.+|+.+.+.+++.+++-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 344455777888888888877643 4899999999999999999999999875
No 258
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=93.90 E-value=0.27 Score=24.56 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=35.3
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC----chhHHhhcccCccceEEE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE----ARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~ 79 (107)
..|+.++|+.|++.+-.+.+..-. +....++... .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 357889999999888887775433 3444555432 356666667778999953
No 259
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=93.82 E-value=0.36 Score=25.38 Aligned_cols=53 Identities=9% Similarity=0.193 Sum_probs=35.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc-hhHHhhcccCccceEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA-RDVATRWNIGSVPTFFF 79 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~v~~~P~~~~ 79 (107)
+..|+.+.|++|++++-.+....-. +....++.... ..+.+..+...+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4456788899999988777764333 44555555433 33555566778999864
No 260
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=93.60 E-value=0.79 Score=29.38 Aligned_cols=87 Identities=21% Similarity=0.351 Sum_probs=54.5
Q ss_pred CCcEEEEEEeCCCChh-hhhhhHHHHHHHhhC---CC----eEEEEEECcC--------------------------chh
Q 044943 19 ALRLVILYFTATWCGP-CRFISPLFTNLASKY---TK----VVFLKVDIDE--------------------------ARD 64 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~-C~~~~~~~~~~~~~~---~~----~~~~~i~~~~--------------------------~~~ 64 (107)
.||.++++|.-+.||. |-.....|.....+. ++ -.|+.+|-.. ...
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5899999999999974 665555554443322 22 2567777532 235
Q ss_pred HHhhcccCccc-------------eEEEE---eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 65 VATRWNIGSVP-------------TFFFI---KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 65 ~~~~~~v~~~P-------------~~~~~---~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
.|++|.|.--+ ++++| .+|+.+..+--. +++++.+.|.++.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 66677664222 34444 578877766333 8888888887664
No 261
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.45 E-value=0.8 Score=26.01 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=33.4
Q ss_pred CeEEEEEECcCchh----------HHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHH
Q 044943 51 KVVFLKVDIDEARD----------VATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIA 102 (107)
Q Consensus 51 ~~~~~~i~~~~~~~----------~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~ 102 (107)
++.+.+.+...++. +.++-|....|.+++ +|+++....-.+.++|.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhC
Confidence 79999999876653 344558889999887 888888754449999998874
No 262
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=93.39 E-value=0.48 Score=26.22 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=37.1
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcC
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDE 61 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~ 61 (107)
-+|+++||.=.|+.|+.-. ....|+++.+++. ++.++.+.+++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 3689999999999999999 7778999998886 69999998864
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=93.11 E-value=0.19 Score=30.06 Aligned_cols=27 Identities=33% Similarity=0.752 Sum_probs=24.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCC
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYT 50 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~ 50 (107)
+.+|+.+.||+|....+.+.++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568899999999999999999999874
No 264
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=92.79 E-value=0.19 Score=30.37 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=25.4
Q ss_pred hHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 044943 64 DVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 101 (107)
..+.+.|+.++|++++ +|+. ...|. +.+.+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 4556779999999988 5543 35688 888888766
No 265
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=92.67 E-value=0.71 Score=23.31 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=45.9
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHHHh
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 105 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 105 (107)
++.++|++|+++.-.++...-. +.+..++..+ ...+.+..+...+|++. .+|..+. +...+.+.+.+..
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~~ 71 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGIP---YELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEERY 71 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTEE---EEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHHS
T ss_pred CCcCCChHHHHHHHHHHHcCCe---EEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHHc
Confidence 6779999999998877664332 4555666544 35566667788999996 4565433 4556666665543
No 266
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=92.46 E-value=1.1 Score=25.09 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=44.5
Q ss_pred CCChhhhhhhHHHHHHHhhC--CCeEEEEEE-CcCc-----------hhHHhhcccCccce-EEEE-eCCeEEEEEcCC-
Q 044943 30 TWCGPCRFISPLFTNLASKY--TKVVFLKVD-IDEA-----------RDVATRWNIGSVPT-FFFI-KNGKEVDKVVGA- 92 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~~~~~--~~~~~~~i~-~~~~-----------~~~~~~~~v~~~P~-~~~~-~~g~~~~~~~g~- 92 (107)
+.-+.=+.....+.+-...+ .++.++.+- -... ..+.+.|++..-.. ++++ ++|.+..+....
T Consensus 20 ~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~ 99 (118)
T PF13778_consen 20 ADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPI 99 (118)
T ss_pred CCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCC
Confidence 34454555555555533222 256666552 2222 26778888653332 3333 799998888777
Q ss_pred CHHHHHHHHHH
Q 044943 93 DKSALERKIAQ 103 (107)
Q Consensus 93 ~~~~l~~~i~~ 103 (107)
+.++|-+.|++
T Consensus 100 ~~~~lf~~ID~ 110 (118)
T PF13778_consen 100 DPEELFDTIDA 110 (118)
T ss_pred CHHHHHHHHhC
Confidence 99999988875
No 267
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=91.61 E-value=0.36 Score=26.52 Aligned_cols=57 Identities=12% Similarity=0.301 Sum_probs=37.8
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccC--ccceEEEE-eCCe
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIG--SVPTFFFI-KNGK 84 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~--~~P~~~~~-~~g~ 84 (107)
||..+||.|......+.+... ...+.++.+.-....++.+.+++. .....+.+ .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 789999999999999988743 245777766444444445556654 34444453 5665
No 268
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=91.17 E-value=0.51 Score=26.27 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=17.5
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTN 44 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~ 44 (107)
+..|+.+.|+.|+++...+.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 457899999999998877766
No 269
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=91.01 E-value=0.45 Score=26.47 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=37.3
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhH-Hhhcc--cCccceEEEE
Q 044943 31 WCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDV-ATRWN--IGSVPTFFFI 80 (107)
Q Consensus 31 ~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~--v~~~P~~~~~ 80 (107)
.|++|..+...+......-..+.+.+|+....+.. ....| -++.|.+++-
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 49999999999988666655688999998776532 33333 4689999775
No 270
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=90.89 E-value=0.61 Score=29.41 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=35.0
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhh-----CCCeEEEEEEC
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASK-----YTKVVFLKVDI 59 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~-----~~~~~~~~i~~ 59 (107)
..|+++||.+-..+|..|..-...|+.|..+ ++++.|+.||-
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 4689999999999999999988888777643 45799999984
No 271
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=90.68 E-value=2 Score=24.91 Aligned_cols=69 Identities=6% Similarity=0.142 Sum_probs=48.1
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCcc-c-eEEEEeCCeEEE
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSV-P-TFFFIKNGKEVD 87 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~-P-~~~~~~~g~~~~ 87 (107)
..+++-.|.+|.-.|+.|......+.+.... ..+.|..+..+....+.+.+++..- + ++++.++|+...
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 3567788899999999999976666554333 3589998888877788777777532 4 444445665443
No 272
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=0.83 Score=30.43 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=43.8
Q ss_pred eEEEEEECcCchhHHhhcccCccceEEEE--eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 52 VVFLKVDIDEARDVATRWNIGSVPTFFFI--KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 52 ~~~~~i~~~~~~~~~~~~~v~~~P~~~~~--~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
+..+..|......+..-|.+..+|.+.++ ..|+.+.+..|. .++++.+-+++++
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 55556677788889999999999988777 479999999888 8888887777665
No 273
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=88.71 E-value=3.5 Score=24.52 Aligned_cols=85 Identities=15% Similarity=0.260 Sum_probs=50.9
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhh-CCC--eEE-EEEECcC-----------------------------chhH
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASK-YTK--VVF-LKVDIDE-----------------------------ARDV 65 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~-~~i~~~~-----------------------------~~~~ 65 (107)
.||+.+|...+-.-..-..-.|.+..+.+. ++. ++- .-+|.++ ....
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 477777777665555555555666666554 442 222 2233322 2233
Q ss_pred HhhcccCcc-ceEEEE-eCCeEEEEEcCC-CHHHHHHHHHH
Q 044943 66 ATRWNIGSV-PTFFFI-KNGKEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 66 ~~~~~v~~~-P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~ 103 (107)
...|+...- -.++++ ++|++.....|. +++++.+.|.=
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred eccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 344455433 455555 789999999999 99998887753
No 274
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=88.55 E-value=2 Score=21.60 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=36.4
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc----CchhHHhhcccCccceEEEEeCCeE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID----EARDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
..|+.+.|+.|++++-.+.+..-. +.+..+|.. ..+++.+.-....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 357778899998888666654333 455566653 234566666778999885 36654
No 275
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=88.37 E-value=1 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=22.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
..|+.+.|+.|+++...+++- ++.+..+|+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di 31 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKY 31 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEec
Confidence 468899999999998888772 444555554
No 276
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=88.28 E-value=1 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=21.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
..|+.+.|+.|+++...+++- ++.+..+|+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di 31 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEY 31 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEec
Confidence 468899999999998777662 444555554
No 277
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=87.92 E-value=0.92 Score=27.06 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=22.9
Q ss_pred hHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 044943 64 DVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 101 (107)
..+.++|+.++|++++ +|+ .+.|. ..+.+...+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4556789999999988 565 34577 666665543
No 278
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=87.25 E-value=3.4 Score=22.65 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=50.8
Q ss_pred ccChhhHHHHHHHHHhCC-cEEEEEEeCCCChhhhhhhHHHHHHHhhC-CCeEEEEEECcCchhHHhhcccCccceEEEE
Q 044943 3 IHSASEFETKLNAATRAL-RLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFI 80 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~-k~~lv~f~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~ 80 (107)
|.+.++++..+ ... +.++|-|+.+.-+ .....+.+++..+ .++.|.... ...+..++++.. |.++++
T Consensus 5 i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~ 73 (107)
T cd03068 5 LQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVF 73 (107)
T ss_pred cCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEE
Confidence 45555555543 334 5666666655332 3556677788877 457775444 346677788764 555555
Q ss_pred e---------CCeEEEEEc-CCCHHHHHHHHHH
Q 044943 81 K---------NGKEVDKVV-GADKSALERKIAQ 103 (107)
Q Consensus 81 ~---------~g~~~~~~~-g~~~~~l~~~i~~ 103 (107)
+ ++..+.... +.+.+.|.++|++
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 2 333333222 2344558888875
No 279
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=86.37 E-value=3.4 Score=27.65 Aligned_cols=75 Identities=12% Similarity=0.051 Sum_probs=46.9
Q ss_pred CChhhhhhhHHH----HHHHhhCC----CeEEEEEECc--Cc-hhHHhhcccC--ccceEEEEeCCeEEEEEcCC-CHHH
Q 044943 31 WCGPCRFISPLF----TNLASKYT----KVVFLKVDID--EA-RDVATRWNIG--SVPTFFFIKNGKEVDKVVGA-DKSA 96 (107)
Q Consensus 31 ~C~~C~~~~~~~----~~~~~~~~----~~~~~~i~~~--~~-~~~~~~~~v~--~~P~~~~~~~g~~~~~~~g~-~~~~ 96 (107)
.||.|-+..-.+ +++.+.+. .+.+..+.|- -. ...-..+|+. +-|...+|.+|+.+.+..+. -.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 488887766433 33333332 2555555442 11 1223345665 36899999999999998887 6788
Q ss_pred HHHHHHHHh
Q 044943 97 LERKIAQHA 105 (107)
Q Consensus 97 l~~~i~~~~ 105 (107)
|...++++.
T Consensus 343 l~~~i~~~~ 351 (361)
T COG0821 343 LEALIEAYA 351 (361)
T ss_pred HHHHHHHHH
Confidence 888887664
No 280
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=86.25 E-value=2.7 Score=20.60 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=34.8
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc----CchhHHhhcccCccceEEEEeCCeE
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID----EARDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
.|+.+.|+.|++.+-.+....-. +....++.. ..+.+.+......+|++.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 47788999999988777765333 344455542 2344555556678998864 4543
No 281
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=84.85 E-value=7.3 Score=24.26 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=27.5
Q ss_pred chhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHH
Q 044943 62 ARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIA 102 (107)
Q Consensus 62 ~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 102 (107)
+|.+.++|+|..+|++++.- +...+...|. +-..-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEc-CCCCCEEEecccHHHHHHHHH
Confidence 48899999999999999973 3334556665 5544444433
No 282
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=83.75 E-value=6.3 Score=22.69 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=48.3
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhh-hhhHHHHH-HHh-hCCCeEEEEEECcCch---hHHhhc--c-cC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCR-FISPLFTN-LAS-KYTKVVFLKVDIDEAR---DVATRW--N-IG 72 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~-~~~~~~~~-~~~-~~~~~~~~~i~~~~~~---~~~~~~--~-v~ 72 (107)
++.+.++.++.+.. ....+||.+ -+-|+=-. ..+|.... +.. .-|+ .++.+=...+. .-.+.| + -.
T Consensus 20 eL~T~e~Vd~~~~~---~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf~~~pP 94 (136)
T PF06491_consen 20 ELTTAEEVDEALKN---KEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYFEPYPP 94 (136)
T ss_dssp E--SHHHHHHHHHH-----SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTSTTS--
T ss_pred ccCCHHHHHHHHhC---CCCcEEEEE-eccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhcCCCCC
Confidence 46677888888873 333444433 35565322 33444433 222 2233 33433222222 223333 2 24
Q ss_pred ccceEEEEeCCeEEEEE-----cCCCHHHHHHHHHHHh
Q 044943 73 SVPTFFFIKNGKEVDKV-----VGADKSALERKIAQHA 105 (107)
Q Consensus 73 ~~P~~~~~~~g~~~~~~-----~g~~~~~l~~~i~~~~ 105 (107)
+-|++.+|++|+.+.-. .|.+.+.+.+-|...+
T Consensus 95 SSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 95 SSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp -SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 88999999999988744 4567777777666544
No 283
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=83.62 E-value=3.3 Score=27.88 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=41.5
Q ss_pred ChhhhhhhHHHHH----HHhhCC----CeEEEEEECcCch--h-HHhhcccC-ccc-eEEEEeCCeEEEEE-cCC-CHHH
Q 044943 32 CGPCRFISPLFTN----LASKYT----KVVFLKVDIDEAR--D-VATRWNIG-SVP-TFFFIKNGKEVDKV-VGA-DKSA 96 (107)
Q Consensus 32 C~~C~~~~~~~~~----~~~~~~----~~~~~~i~~~~~~--~-~~~~~~v~-~~P-~~~~~~~g~~~~~~-~g~-~~~~ 96 (107)
||.|-+..-.+.+ +.+... ++++..+.|--+. + -...||+. +-| ..++|++|+.+.+. ... -.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 6666666544433 333333 5888888775332 2 23456766 333 57888999999998 555 5678
Q ss_pred HHHHHHHH
Q 044943 97 LERKIAQH 104 (107)
Q Consensus 97 l~~~i~~~ 104 (107)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888765
No 284
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=82.84 E-value=5.9 Score=26.76 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=42.7
Q ss_pred ChhhhhhhHHH----HHHHhhCC----CeEEEEEECc-Cch--hHHhhcccCc-cceEEEEeCCeEEEEEcCC-CHHHHH
Q 044943 32 CGPCRFISPLF----TNLASKYT----KVVFLKVDID-EAR--DVATRWNIGS-VPTFFFIKNGKEVDKVVGA-DKSALE 98 (107)
Q Consensus 32 C~~C~~~~~~~----~~~~~~~~----~~~~~~i~~~-~~~--~~~~~~~v~~-~P~~~~~~~g~~~~~~~g~-~~~~l~ 98 (107)
||.|.+....+ .++.+.+. .+++..+.|- ..+ ..-..+|+.+ -+..++|.+|+.+.+..+. --++|.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 55555544333 34444433 2666666663 222 2345567764 4567777999999987665 455666
Q ss_pred HHHHHHh
Q 044943 99 RKIAQHA 105 (107)
Q Consensus 99 ~~i~~~~ 105 (107)
+.|+++.
T Consensus 351 ~~i~~~~ 357 (360)
T PRK00366 351 AEIEAYA 357 (360)
T ss_pred HHHHHHH
Confidence 6666543
No 285
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=82.28 E-value=11 Score=24.18 Aligned_cols=54 Identities=17% Similarity=0.096 Sum_probs=35.5
Q ss_pred CcEEEEEEeCCC------ChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhh----cccCc
Q 044943 20 LRLVILYFTATW------CGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATR----WNIGS 73 (107)
Q Consensus 20 ~k~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----~~v~~ 73 (107)
.+++-|.+|.+. -+.-..+...++++++.-+ ++.+-.+|.+..++..++ +|+..
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 446655555543 3444555566677777767 699999998776666555 77765
No 286
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=81.42 E-value=2.8 Score=25.00 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=16.7
Q ss_pred hHHhhcccCccceEEEEeCCe
Q 044943 64 DVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~~g~ 84 (107)
..+.++|+.++|++++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 455677999999999987654
No 287
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=81.09 E-value=2.6 Score=23.66 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=18.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNL 45 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~ 45 (107)
+..|+.+.|..|+.+..-+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678999999999999887763
No 288
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=81.05 E-value=5.2 Score=19.86 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=33.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc----CchhHHhhcccCccceEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID----EARDVATRWNIGSVPTFF 78 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~~~P~~~ 78 (107)
+..|+.+.|++|++..-.+....-. +....++.. ..+.+.+......+|.+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 3455667799999998877775433 344445542 234566666778999874
No 289
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=81.04 E-value=2.1 Score=25.49 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=21.9
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCC
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYT 50 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~ 50 (107)
+|+..-||+|.-..+.+.++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5677799999999999999988875
No 290
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=80.66 E-value=9.2 Score=22.46 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=24.5
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEE
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKV 57 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i 57 (107)
++-+.++.-.+-|.+|+ ..+..++++.. .+.+...
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 55577777799999999 77777777753 2444433
No 291
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=80.40 E-value=3.7 Score=21.33 Aligned_cols=34 Identities=18% Similarity=0.487 Sum_probs=21.3
Q ss_pred CccceEEEEe-CCeEEEEE--cCCCHHHHHHHHHHHh
Q 044943 72 GSVPTFFFIK-NGKEVDKV--VGADKSALERKIAQHA 105 (107)
Q Consensus 72 ~~~P~~~~~~-~g~~~~~~--~g~~~~~l~~~i~~~~ 105 (107)
..-|+++++. +|+++.+. .+.+.+++.+++.+..
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 4668999985 78877765 3459999999998653
No 292
>PRK13669 hypothetical protein; Provisional
Probab=80.37 E-value=6.5 Score=20.50 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=35.8
Q ss_pred HHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHHHhC
Q 044943 42 FTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 106 (107)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (107)
++.+ ++.|++.+...++-..-..+.+ ..+.+-+|+.+. |.+++++.+.|.+++.
T Consensus 20 ~~~L-e~dP~~dVie~gCls~CG~C~~-------~~FAlVng~~V~---a~t~eeL~~kI~~~i~ 73 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYCGICSE-------GLFALVNGEVVE---GETPEELVENIYAHLE 73 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhCcCccc-------CceEEECCeEee---cCCHHHHHHHHHHHHh
Confidence 4445 5678999988886554444432 223344786665 6789999998887764
No 293
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=80.00 E-value=4.8 Score=22.02 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=20.2
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE 61 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~ 61 (107)
|+.+.|..|+++...+++ .++.+-.+|..+
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhh
Confidence 577899999999988876 356677777754
No 294
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.95 E-value=3.2 Score=24.95 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=22.1
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCC
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYT 50 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~ 50 (107)
+|+..-||+|.-..+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5677789999999999999998884
No 295
>PRK10853 putative reductase; Provisional
Probab=79.63 E-value=3.9 Score=22.93 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=17.7
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTN 44 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~ 44 (107)
+..|+.+.|..|+++..-+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 457888999999999888776
No 296
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=79.55 E-value=8.7 Score=21.47 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=62.1
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCC---CeEEEEEECcCchhHH----hhcccC-ccceEEEEe--C-CeEEEE
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYT---KVVFLKVDIDEARDVA----TRWNIG-SVPTFFFIK--N-GKEVDK 88 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~----~~~~v~-~~P~~~~~~--~-g~~~~~ 88 (107)
+...++.|-..--+.-..+.+.++++++.+. ++.++-||-+..|-+- +.|+|. .-|.+=++. + ..+-..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 4667788888889999999999999999864 6999999999887654 345553 458887772 2 222222
Q ss_pred Ec---CC-CHHHHHHHHHHHh
Q 044943 89 VV---GA-DKSALERKIAQHA 105 (107)
Q Consensus 89 ~~---g~-~~~~l~~~i~~~~ 105 (107)
.. .. +.++|.++|+..+
T Consensus 100 m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccccccCcHHHHHHHHHhhC
Confidence 21 23 7889999998753
No 297
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=78.87 E-value=5.7 Score=22.58 Aligned_cols=21 Identities=10% Similarity=0.274 Sum_probs=17.8
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTN 44 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~ 44 (107)
+..|+.+.|..|+++..-|++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457888999999999888776
No 298
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=77.20 E-value=9.2 Score=20.46 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=40.5
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHHH
Q 044943 30 TWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 104 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 104 (107)
..|++|++.+=.+.+..- .+.+..+|... ...+.+......+|++. .+|..+ .+...+.+.|++.
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i-----~eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK-----TDNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe-----cCHHHHHHHHHHH
Confidence 579999998877766421 24556677654 34556666778899654 344333 2456666666654
No 299
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=76.87 E-value=3 Score=25.16 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=20.5
Q ss_pred hCCcEEEEEEeC-CCChhhhhhhH----HHHHHHhhCCCeEEEEEEC
Q 044943 18 RALRLVILYFTA-TWCGPCRFISP----LFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 18 ~~~k~~lv~f~~-~~C~~C~~~~~----~~~~~~~~~~~~~~~~i~~ 59 (107)
..+++++++||- ..-|-|-+..- .++++.+.. ..++.+..
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~ 132 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSG 132 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeecc
Confidence 356688887772 23455655443 444444432 34444443
No 300
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=76.49 E-value=15 Score=22.45 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=37.5
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhcccCccceEEEEeCCeEE
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
.+-.|+.+.|++|++..-.+.+..-. +....+|... .+++.+......+|++. .+|..+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVS---VEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCC---CEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 34455667899999998777764322 4455555543 34566666778899996 345433
No 301
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=75.55 E-value=20 Score=23.66 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC--cCch---hHHhhcccCccceEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI--DEAR---DVATRWNIGSVPTFFF 79 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--~~~~---~~~~~~~v~~~P~~~~ 79 (107)
+.+++++.+..+.+...-+.+.+..+.|..-..-.....++++.. ++-++.-+. .... ++++.++ .|++.+
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~v-D~miVVGg~~SsNT~kL~~i~~~~~---~~t~~I 242 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQA-DLVIVVGSKNSSNSNRLREVAEEAG---APAYLI 242 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhC-CEEEEECCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 455677777766555444444457888988888888888888874 333332222 2222 3444443 444443
Q ss_pred E----------eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 80 I----------KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 80 ~----------~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
= ++-+.++-..|. +|+.+.+.+...+
T Consensus 243 e~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 243 DDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred CChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 2 234577778888 8887766665443
No 302
>PRK10026 arsenate reductase; Provisional
Probab=75.39 E-value=4.4 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNL 45 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~ 45 (107)
+..|+.+.|+.|+++..-+++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5578899999999999888763
No 303
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.28 E-value=3.6 Score=25.45 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=26.5
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEE
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYTKVVFL 55 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 55 (107)
.|.+++.|=|++|.-..|.++++...- ++.+.
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~-gl~~~ 34 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP-GLEVV 34 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC-CceEE
Confidence 477889999999999999999998874 44444
No 304
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=73.23 E-value=12 Score=19.99 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCeEEEEEECcCchhHHhhc--------ccCccceEEEEeCCeEEE
Q 044943 50 TKVVFLKVDIDEARDVATRW--------NIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 50 ~~~~~~~i~~~~~~~~~~~~--------~v~~~P~~~~~~~g~~~~ 87 (107)
.++.|-.+|++.+++..+.+ +-..+|.+++ ++..++
T Consensus 29 k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 29 KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 36889999987666544332 2356777754 555554
No 305
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=73.17 E-value=10 Score=24.82 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=54.2
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC--c---hhHHhhcccCccceEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE--A---RDVATRWNIGSVPTFFF 79 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~--~---~~~~~~~~v~~~P~~~~ 79 (107)
+.+++.+.+..+.+........++.+.|..-..-...+.++++.. ++-++.-+... . .++++.++ .|++.+
T Consensus 166 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D~miVIGg~~SsNT~kL~eia~~~~---~~t~~I 241 (281)
T PF02401_consen 166 SVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-DAMIVIGGKNSSNTRKLAEIAKEHG---KPTYHI 241 (281)
T ss_dssp -HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-SEEEEES-TT-HHHHHHHHHHHHCT---TCEEEE
T ss_pred cHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-CEEEEecCCCCccHHHHHHHHHHhC---CCEEEe
Confidence 455677777776666666555688889988888888888888874 33333222221 1 23444443 355544
Q ss_pred E----------eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 80 I----------KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 80 ~----------~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
= ++.+.++-..|. +|+.+.+.+-+.+
T Consensus 242 e~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 242 ETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp SSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2 345588888898 8888777766554
No 306
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=73.01 E-value=9.7 Score=18.74 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=34.2
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc-CchhHHhhcccCccceEEEEeCCe
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID-EARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
.|+.+.|+.|.+.+-.+....... .+..+.+|.. ..+++.+......+|.+.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 467788999998887776621111 2445555532 2345555556778997753 3443
No 307
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.21 E-value=22 Score=22.52 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCcEEEEEEeCC---CChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcc-cCccceEEEE-eCC
Q 044943 9 FETKLNAATRALRLVILYFTAT---WCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWN-IGSVPTFFFI-KNG 83 (107)
Q Consensus 9 ~~~~~~~~~~~~k~~lv~f~~~---~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~P~~~~~-~~g 83 (107)
.++.+..+.+.+++++-+=..+ .|+.++++...+++. ++.+...|+-.+.++.+... ...|||+==+ -+|
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence 5556777655555444444444 566666666666552 45577888877777665443 2355655322 466
Q ss_pred eEEE
Q 044943 84 KEVD 87 (107)
Q Consensus 84 ~~~~ 87 (107)
+-++
T Consensus 203 EFiG 206 (227)
T KOG0911|consen 203 EFIG 206 (227)
T ss_pred Eecc
Confidence 5554
No 308
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=72.04 E-value=16 Score=20.99 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=22.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVVFLKVD 58 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~ 58 (107)
++---+-|+.|.. ++.++...||++.+..++
T Consensus 101 l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 101 LFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 3334557888875 788888899987776553
No 309
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=71.69 E-value=16 Score=20.71 Aligned_cols=62 Identities=16% Similarity=0.308 Sum_probs=37.2
Q ss_pred EEEEeCC--CChhhhhhhHHHHHHHhh----CC----CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEc
Q 044943 24 ILYFTAT--WCGPCRFISPLFTNLASK----YT----KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVV 90 (107)
Q Consensus 24 lv~f~~~--~C~~C~~~~~~~~~~~~~----~~----~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 90 (107)
+.++-.+ .|..|......+.+..+. +. .+.+-.+.++. .++...+ -+.|++.+ +|+.+....
T Consensus 5 w~~l~~~g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~-~~~~~~~--~~S~~I~i--nG~piE~~l 76 (120)
T PF10865_consen 5 WQHLDLDGKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE-EEFARQP--LESPTIRI--NGRPIEDLL 76 (120)
T ss_pred EEEeecCCCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh-HHHhhcc--cCCCeeeE--CCEehhHhh
Confidence 3444445 899999888777665443 22 36666666653 4556555 56677655 566654333
No 310
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=70.38 E-value=27 Score=22.86 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEE--CcCch---hHHhhcccCccceEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVD--IDEAR---DVATRWNIGSVPTFFF 79 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~--~~~~~---~~~~~~~v~~~P~~~~ 79 (107)
+.+++++.+..+.+.....-+.+..+.|..-+.-...+.+++... ++-++.-+ ..... ++++..+ .|++.+
T Consensus 165 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~v-D~miVVGg~nSsNT~rL~ei~~~~~---~~t~~I 240 (280)
T TIGR00216 165 SQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEV-DLMIVIGGKNSSNTTRLYEIAEEHG---PPSYLI 240 (280)
T ss_pred cHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhC-CEEEEECCCCCchHHHHHHHHHHhC---CCEEEE
Confidence 455666666665443311233456888888888888888888874 33333222 22222 3444443 455544
Q ss_pred E----------eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 80 I----------KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 80 ~----------~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
= ++.+.++-..|. +|+.+.+.+-+.+
T Consensus 241 e~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l 277 (280)
T TIGR00216 241 ETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKI 277 (280)
T ss_pred CChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 2 234567888888 8887777665554
No 311
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.18 E-value=4.6 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=19.2
Q ss_pred cEEEEEEeCCCChhhhhhhHHHHH
Q 044943 21 RLVILYFTATWCGPCRFISPLFTN 44 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~~ 44 (107)
+..++.|....||+|+...+.+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 677888888888888877777766
No 312
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=69.81 E-value=14 Score=20.81 Aligned_cols=35 Identities=17% Similarity=0.412 Sum_probs=29.0
Q ss_pred CccceEEEEeCCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 72 GSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 72 ~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
.++|.+++|++-+.++-..-. +++++.+.+++..+
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~~ 116 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERCG 116 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhCc
Confidence 489999999988888877666 99999999987653
No 313
>COG3411 Ferredoxin [Energy production and conversion]
Probab=68.69 E-value=13 Score=18.56 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=21.3
Q ss_pred ccceEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 73 SVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 73 ~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
.=|.+++|.+| ...+. +++...+.+++++
T Consensus 16 ~gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 16 DGPVLVVYPEG----VWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred cCCEEEEecCC----eeEeccCHHHHHHHHHHHH
Confidence 45899999888 22233 8888888888776
No 314
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=26 Score=21.69 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=54.5
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--CeEEEEEECc----------------------------CchhHHh
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--KVVFLKVDID----------------------------EARDVAT 67 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~----------------------------~~~~~~~ 67 (107)
.+|.++++|| ++.-+.|-.....+.+...++. +..++.+.+| ...++++
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~ 111 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIAR 111 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHH
Confidence 3477777776 5566888887777777666554 5666666543 2357788
Q ss_pred hcccCc------cceEEEE-eCCeEEEEE-----cCCCHHHHHHHHHHH
Q 044943 68 RWNIGS------VPTFFFI-KNGKEVDKV-----VGADKSALERKIAQH 104 (107)
Q Consensus 68 ~~~v~~------~P~~~~~-~~g~~~~~~-----~g~~~~~l~~~i~~~ 104 (107)
.||+-. +=.++++ .+|.+.... .|.+.+++.+.++++
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 887742 2233333 567655432 255788888877764
No 315
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=67.74 E-value=29 Score=22.04 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=35.2
Q ss_pred hhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEc
Q 044943 33 GPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVV 90 (107)
Q Consensus 33 ~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 90 (107)
-+|..++..+++++.++.. +.++--|++ ++..|.- .++.+++|+++....
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDIN----fAS~YsD----~IVAlK~G~vv~~G~ 219 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDIN----FASCYSD----HIVALKNGKVVKQGS 219 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEeccc----HHHhhhh----heeeecCCEEEecCC
Confidence 5788999999999999875 555555544 3333332 567779999988753
No 316
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=66.35 E-value=15 Score=18.16 Aligned_cols=50 Identities=6% Similarity=0.026 Sum_probs=30.4
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhccc-CccceEE
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNI-GSVPTFF 78 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v-~~~P~~~ 78 (107)
.++.+.|++|.+..-.+....-. +....++... .+.+.+.... ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEE
Confidence 45677899999998877775433 3344444432 2344443343 6899885
No 317
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=65.91 E-value=18 Score=22.16 Aligned_cols=34 Identities=6% Similarity=0.154 Sum_probs=24.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCC-CeEEEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKV 57 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i 57 (107)
+-+|+..-||+|.--...+.++...++ .+.+.-+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 446677789999999999998877653 2444443
No 318
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=65.55 E-value=16 Score=18.20 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=33.3
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc---CchhHHhhcccCccceEEE
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID---EARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~v~~~P~~~~ 79 (107)
.|+.+.|+.|.+.+-.++...- .+....+|.. ..+++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 3566788999988777765422 2455556553 3455666667789999854
No 319
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=65.03 E-value=18 Score=18.82 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=36.1
Q ss_pred hHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHHHhC
Q 044943 39 SPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 106 (107)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (107)
...++++. +.|++.+...++-..-..+.+ .|. .+-+|+.+. +.++++|.+.|.+.+.
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~Cg~C~~-----~pF--AlVnG~~V~---A~t~eeL~~kI~~~i~ 73 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSYCGPCAK-----KPF--ALVNGEIVA---AETAEELLEKIKEKIE 73 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhhCcCCCC-----Ccc--EEECCEEEe---cCCHHHHHHHHHHHHh
Confidence 34455565 458888888886544443332 222 234776665 6789999999888764
No 320
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=65.01 E-value=20 Score=21.06 Aligned_cols=43 Identities=7% Similarity=-0.003 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT 50 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~ 50 (107)
.+..+.+.....+++|-+|.+.+ +...|+++...+.++..+..
T Consensus 49 ~~~~~~l~~~i~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 49 EEDMERLKKFIEKHKPDVIAVGG-NSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp HHHHHHHHHHHHHH--SEEEE---SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEcC-CChhHHHHHHHHHHHHHHhh
Confidence 34455566666778888888855 78999999999988876654
No 321
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=64.66 E-value=11 Score=25.37 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=24.1
Q ss_pred CeEEEEEECcCc--h-hHHhhcccCc--cceEEEEeCCeEEEEEc
Q 044943 51 KVVFLKVDIDEA--R-DVATRWNIGS--VPTFFFIKNGKEVDKVV 90 (107)
Q Consensus 51 ~~~~~~i~~~~~--~-~~~~~~~v~~--~P~~~~~~~g~~~~~~~ 90 (107)
.+.+..+.|--+ . .-...+|+.+ --..++|++|+.+.+..
T Consensus 289 ~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~ 333 (346)
T TIGR00612 289 PLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQP 333 (346)
T ss_pred CCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecC
Confidence 477776665322 1 2234466654 34677889999877654
No 322
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=64.08 E-value=34 Score=21.62 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=24.2
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
.+.+.+++.+++.++.+.+.|.+|.+..+
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~ 200 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 36778889999999888888999988766
No 323
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.67 E-value=20 Score=22.09 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=33.1
Q ss_pred HHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEE
Q 044943 13 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVD 58 (107)
Q Consensus 13 ~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~ 58 (107)
+.++-++++.+++..--+.|-.|+.....+.++..... ++..+.+-
T Consensus 44 ~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 44 VTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 44555678888888889999999999999888754333 45544443
No 324
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=63.05 E-value=27 Score=23.39 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=31.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEE
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVD 58 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~ 58 (107)
.|||+++.|-...-+..+.+...+++.+++.. ++.++.+.
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 48999888877777889999999999888754 56666554
No 325
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=62.49 E-value=39 Score=23.93 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC
Q 044943 8 EFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE 61 (107)
Q Consensus 8 ~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~ 61 (107)
.-+..+.++..-+||.+|..=+. -|+.......-.++.++| ++..+.+||.+
T Consensus 168 AEervI~ELk~igKPFvillNs~-~P~s~et~~L~~eL~ekY-~vpVlpvnc~~ 219 (492)
T PF09547_consen 168 AEERVIEELKEIGKPFVILLNST-KPYSEETQELAEELEEKY-DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCC-CCCCHHHHHHHHHHHHHh-CCcEEEeehHH
Confidence 34667788888899887766433 366666666666777777 67778888753
No 326
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=61.78 E-value=9.3 Score=24.37 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=36.9
Q ss_pred HHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhccc
Q 044943 12 KLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNI 71 (107)
Q Consensus 12 ~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v 71 (107)
.+.++...+++++. +.+.++.++.+...++++...........++.++-..+..+||+
T Consensus 213 ~v~~A~~~g~pv~~--~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 213 IVQKAEIRKMTVIE--YDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred HHHHHHHcCCceEE--eCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 45555566777743 46778888877777777766544344445555555666666665
No 327
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=61.75 E-value=15 Score=22.06 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=17.8
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
+.+.+++++++..+.+.+++++|.+..+
T Consensus 147 v~~~~el~~al~~a~~~~~p~liev~~~ 174 (186)
T cd02015 147 VEKPEELEAALKEALASDGPVLLDVLVD 174 (186)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4556666667766666666776666544
No 328
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=61.47 E-value=18 Score=22.02 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=21.3
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
+.+.+++++++.++.+.+.|.+|.+..+
T Consensus 157 v~~~~el~~al~~al~~~gp~vIev~~~ 184 (193)
T cd03375 157 SGDIKQLKEIIKKAIQHKGFSFVEVLSP 184 (193)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 5667788888888887788888888643
No 329
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.45 E-value=2.4 Score=25.86 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc-h----hHHhhcccCccceEEEEeCCeEE
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA-R----DVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
..|+++-.+|.+.|.+=.+..-.++.+. ..+.-+|.-+. . ++.+--....+|++++ +|..+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iD-----Yey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl 68 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGID-----YEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTL 68 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCC-----cceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEe
Confidence 4588888899999988766655554433 33333333211 2 2223234568898876 44433
No 330
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=61.35 E-value=32 Score=21.03 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=29.4
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeE
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
++.+.||+|+++.-.+....-.+ ..+.++.+......+..+...+|++.. .+|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 45677999998887776643332 222232222222233334567897743 35543
No 331
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=61.08 E-value=36 Score=20.87 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=46.5
Q ss_pred hhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHH----hhccc-CccceEEEE-eCCeEEEEEcCC-CHHHHHHHH
Q 044943 33 GPCRFISPLFTNLASKYTKVVFLKVDIDEARDVA----TRWNI-GSVPTFFFI-KNGKEVDKVVGA-DKSALERKI 101 (107)
Q Consensus 33 ~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~v-~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i 101 (107)
+.-..+...++.++.-.+.++.+.|.|.....+. ..|.+ ...|...++ -+|+.+.-..|. +...-.++-
T Consensus 18 gr~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~ 93 (183)
T PF12617_consen 18 GRLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLA 93 (183)
T ss_pred CccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHH
Confidence 4456677788888888778999999998765543 33433 346666666 589998877777 444433333
No 332
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.89 E-value=26 Score=19.10 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=28.0
Q ss_pred hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEE
Q 044943 18 RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVD 58 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~ 58 (107)
.+.++-+|-++..+.+....+....+.+.+..+++.++.-.
T Consensus 48 ~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 48 RAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred hcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 34566677777777777777777777777777775555444
No 333
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=60.29 E-value=25 Score=19.15 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=20.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhC--CCeEEEEEECcCchhH
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKY--TKVVFLKVDIDEARDV 65 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 65 (107)
|.+|.+.+....+.+..-+++...+ .++.|-.+|+...++.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~ 45 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA 45 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH
Confidence 3444455555666665544443332 3699999999765543
No 334
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=60.18 E-value=13 Score=24.17 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.6
Q ss_pred HhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHH
Q 044943 66 ATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 103 (107)
Q Consensus 66 ~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~ 103 (107)
..+||.+++-||++-.+|.+..+..|.......+.|+.
T Consensus 224 Pa~YG~TGVmtF~Vn~~g~VYqkDLG~~t~~~A~ai~~ 261 (271)
T PF11453_consen 224 PAEYGETGVMTFMVNQDGQVYQKDLGPDTAAKAAAITS 261 (271)
T ss_pred ehhhCCCceEEEEECCCCcEEecccCcchHHHhhhhhc
Confidence 35789999999999999999999999966666555543
No 335
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=58.98 E-value=25 Score=18.35 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=21.0
Q ss_pred cceEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 74 VPTFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 74 ~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
-.++.+|..|+.+-. |. +.+++.+.++++.
T Consensus 49 ~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 49 KATVLIFSSGKIVIT--GAKSEEEAKKAIEKIL 79 (86)
T ss_dssp TEEEEEETTSEEEEE--EESSHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 457788899988765 55 7777776666543
No 336
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=58.91 E-value=43 Score=21.11 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=39.6
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHH-hhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHHHh
Q 044943 31 WCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVA-TRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 105 (107)
Q Consensus 31 ~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 105 (107)
.|+.|+++.-.+. ..-..+.+-.+|+...++-. ...+-..+|.+.+ +|+.+. +.+.++++|++.+
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~~t-----Ds~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKWVT-----DSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCceec-----cHHHHHHHHHHhc
Confidence 5888888877666 23235777888988776554 4445566776654 222111 4566666666544
No 337
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=58.62 E-value=21 Score=20.93 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEE
Q 044943 42 FTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~ 79 (107)
++++.+.-+++.+.-++ ..++++++++..+|.++-
T Consensus 103 L~~Lr~lapgl~l~P~s---gddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 103 LQRLRQLAPGLPLLPVS---GDDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHHcCCCeecCCC---HHHHHHHhCCCcccEEee
Confidence 33333333444444443 568899999999998864
No 338
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=57.85 E-value=18 Score=20.01 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.0
Q ss_pred chhHHhhcccCccceEEE
Q 044943 62 ARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 62 ~~~~~~~~~v~~~P~~~~ 79 (107)
..++++++++..||.++-
T Consensus 82 gddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 82 GDDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHhCCCcccEEEe
Confidence 458899999999998764
No 339
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=57.62 E-value=23 Score=17.45 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=32.1
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEE----CcCchhHHhhcccCccceEEEEeCCeEE
Q 044943 31 WCGPCRFISPLFTNLASKYTKVVFLKVD----IDEARDVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 31 ~C~~C~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
.||+|++..-.++...-.+ .+..+ .+ ....+.+.+.-+...+|++.. .+|+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-~~~~v-~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi 57 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-EIKVV-PLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVI 57 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-EEEEE-ETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEE
T ss_pred CchHhHHHHHHHHHhCCCC-EEEEE-eeecCccccChhhhccCcCeEEEEEEE-CCCCEe
Confidence 5999999998888765543 23333 11 122356666667789999876 466633
No 340
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=56.80 E-value=11 Score=20.72 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=13.2
Q ss_pred CCCChhhhhhhHHHHHH
Q 044943 29 ATWCGPCRFISPLFTNL 45 (107)
Q Consensus 29 ~~~C~~C~~~~~~~~~~ 45 (107)
++.||.|.+-...+.+.
T Consensus 31 ~s~Cp~C~kkraeLa~~ 47 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQS 47 (104)
T ss_pred cccChHHHHHHHHHHHH
Confidence 56899999988776553
No 341
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=55.99 E-value=42 Score=20.03 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCcE-EEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc
Q 044943 19 ALRL-VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID 60 (107)
Q Consensus 19 ~~k~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~ 60 (107)
.+|. ++..|-+=.-|.|...-..+++.+..+.+..++.|..|
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 3444 45555566779999999999999999998878877765
No 342
>PRK10387 glutaredoxin 2; Provisional
Probab=55.32 E-value=31 Score=20.77 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=30.2
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeE
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
++.+.||+|.++.-.++...-. +....++...........+...+|+++. .+|..
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNIP---VELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 4567899999988877664332 2333344332222222334467888853 34433
No 343
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=54.41 E-value=20 Score=21.43 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=18.1
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTA 29 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~ 29 (107)
+.+.+++++++.++.+.++|.+|.+.-
T Consensus 143 v~~~~el~~al~~a~~~~~p~liev~~ 169 (177)
T cd02010 143 IESADDLLPVLERALAADGVHVIDCPV 169 (177)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 456667777777776666777776643
No 344
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=53.81 E-value=20 Score=22.00 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=13.3
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEe
Q 044943 3 IHSASEFETKLNAATRALRLVILYFT 28 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~ 28 (107)
+.+.+++++++..+.+.++|.+|.+-
T Consensus 157 v~~~~el~~al~~a~~~~gp~lIeV~ 182 (205)
T cd02003 157 VKTIEELKAALAKAKASDRTTVIVIK 182 (205)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34455555555555554555555443
No 345
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=51.92 E-value=12 Score=18.33 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=23.7
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEE
Q 044943 30 TWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~ 79 (107)
++|++|.+++-.++.. ++.+-.++.+... .-....+|++..
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~ 54 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL 54 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE
Confidence 5899999998887762 3333333333211 123447887754
No 346
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=51.56 E-value=24 Score=20.56 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=24.4
Q ss_pred ccceEEEE-eCCeEEEEE-cCCCHHHHHHHHHHHhCC
Q 044943 73 SVPTFFFI-KNGKEVDKV-VGADKSALERKIAQHAGQ 107 (107)
Q Consensus 73 ~~P~~~~~-~~g~~~~~~-~g~~~~~l~~~i~~~~~~ 107 (107)
-.|..-.| .+|+.+... .|.+.+++.+.+.+.+|+
T Consensus 73 psPF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lGK 109 (169)
T KOG4079|consen 73 PSPFARAYLDDGREVLFDLDGMKREEIEKHLAKTLGK 109 (169)
T ss_pred CChHHHheecCcceEEEEcccccHHHHHHHHHHHhCc
Confidence 44544455 678766654 455999999999888774
No 347
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=51.17 E-value=45 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 76 TFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 76 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
++++|+.|+.+=+ |. +.+++...+++++
T Consensus 55 a~LIF~SGK~VcT--GaKs~ed~~~av~~~~ 83 (185)
T COG2101 55 AALIFRSGKVVCT--GAKSVEDVHRAVKKLA 83 (185)
T ss_pred eEEEEecCcEEEe--ccCcHHHHHHHHHHHH
Confidence 6677789988765 77 8888877777654
No 348
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=50.67 E-value=40 Score=18.19 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=35.5
Q ss_pred CChhhhhhhHH------H-HHHHhhCCC--eEEEEEECcCchh------HHhhc--ccCccceEEEEeCCeEEEEEcCC-
Q 044943 31 WCGPCRFISPL------F-TNLASKYTK--VVFLKVDIDEARD------VATRW--NIGSVPTFFFIKNGKEVDKVVGA- 92 (107)
Q Consensus 31 ~C~~C~~~~~~------~-~~~~~~~~~--~~~~~i~~~~~~~------~~~~~--~v~~~P~~~~~~~g~~~~~~~g~- 92 (107)
-|..|..+-.. | ..+.++||+ +.+-.+|+...++ ++++. .---+|.+++ +|+++.. |.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CCc
Confidence 58888765432 2 336678885 8888999875543 33322 2236887766 7888876 54
Q ss_pred CHHHHHHHH
Q 044943 93 DKSALERKI 101 (107)
Q Consensus 93 ~~~~l~~~i 101 (107)
..+.+.+.|
T Consensus 84 ~LK~I~~~~ 92 (93)
T PF07315_consen 84 QLKDIYEEM 92 (93)
T ss_dssp -HHHHHHHH
T ss_pred cHHHHHHhh
Confidence 555555444
No 349
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=50.20 E-value=53 Score=19.51 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=28.4
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKYTK 51 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~ 51 (107)
++.+.+.++++..+.|.-+...++.+++.+.+
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~ 158 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFE 158 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTE
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCC
Confidence 56778889999999999999999999998865
No 350
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=50.18 E-value=76 Score=21.43 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
+.++++..+..+.+++.-+++ ...-.+...+.+++.++|++.|+-+|-
T Consensus 82 ~~~~~~~~~~~~a~~g~~lI~-------~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 82 SEADYERALRALAEDGYDLIF-------GTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred chhHHHHHHHHHHhcCCCEEE-------EeccchhhHHHHHHHHCCCCEEEEecC
Confidence 357778888877666663332 223456778888999999999998885
No 351
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=50.13 E-value=74 Score=21.15 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=37.7
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhH----HHHHHHhhCCCeEEEEEEC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISP----LFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~----~~~~~~~~~~~~~~~~i~~ 59 (107)
+.+..++.+.+.++.+.+.+.+|.+++| |+.-....+ .+.+++.+-.-+.+++++-
T Consensus 184 ~~~~~~l~~~i~~A~~~~Gps~I~v~sP-C~~~~~~~~~~~~~~~klAvetg~~plye~~~ 243 (299)
T PRK11865 184 IGYPEDFMEKVKKAKEVEGPAYIQVLQP-CPTGWGFPPEKTIEIGRLAVETGYWPLFEIEN 243 (299)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHhcCceeEEEEEC
Confidence 4467788888999888888999999987 444333222 2345555544477777764
No 352
>PRK11752 putative S-transferase; Provisional
Probab=50.04 E-value=66 Score=20.59 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=36.5
Q ss_pred EEEeCCCChhhhhhhHHHHHH-HhhCC--CeEEEEEECcC----chhHHhhcccCccceEEE
Q 044943 25 LYFTATWCGPCRFISPLFTNL-ASKYT--KVVFLKVDIDE----ARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~-~~~~~--~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~ 79 (107)
+.+|...++.|+++.-.+.++ +...+ .+.++.+|... .+++.+......+|+++.
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 344556799999999888885 33333 35566666532 345666667789999964
No 353
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=49.95 E-value=30 Score=23.12 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=22.7
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCC
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATW 31 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~ 31 (107)
.|.......+..+.++++++++..|.|.
T Consensus 185 ~S~aam~a~l~~A~~~~epiv~~~W~Ph 212 (331)
T PRK11119 185 GNYAALMADTIARYKEGKPVLYYTWTPY 212 (331)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecch
Confidence 3455567778888899999999999995
No 354
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=49.88 E-value=65 Score=20.46 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=45.6
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHHH
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQ 103 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 103 (107)
.|.-.+|-.|..+...++.=- ..+++.++ +....+.+.-+-++-++|.+++ +|+.+.. +. ++++++..++.
T Consensus 15 I~~HktC~ssy~Lf~~L~nkg-ll~~Vkii--~a~~p~f~~~~~~V~SvP~Vf~--DGel~~~--dpVdp~~ies~~~G 86 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLENKG-LLGKVKII--DAELPPFLAFEKGVISVPSVFI--DGELVYA--DPVDPEEIESILSG 86 (265)
T ss_pred EEEecchHHHHHHHHHHHhcC-CCCCceEE--EcCCChHHHhhcceeecceEEE--cCeEEEc--CCCCHHHHHHHHcC
Confidence 345568999988776665411 12445554 4455566665668889999755 6776543 44 88888877753
No 355
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=49.43 E-value=67 Score=20.45 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
+.+++.+.++.+.+++ +-+|.. ....+.+.+.+.++++|+..|+.+|.
T Consensus 42 ~~~~~~~~i~~~~~~g-~dlIi~------~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 42 EGADAERVLRELAAQG-YDLIFG------TSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred chHhHHHHHHHHHHcC-CCEEEE------CchhhhHHHHHHHHHCCCCEEEECCC
Confidence 4566777777766554 333333 34467778888888899888888764
No 356
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=49.42 E-value=41 Score=18.03 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=21.8
Q ss_pred ccceEEEEe--CCeEEEEEcCC-CHHHHHHHHHHHhC
Q 044943 73 SVPTFFFIK--NGKEVDKVVGA-DKSALERKIAQHAG 106 (107)
Q Consensus 73 ~~P~~~~~~--~g~~~~~~~g~-~~~~l~~~i~~~~~ 106 (107)
.=|.+++|. +| ...|. +++.+...+++++.
T Consensus 52 ~gp~vvvyP~~~g----~wy~~v~p~~v~~Iv~~hl~ 84 (97)
T cd03062 52 FAGNVIIYPKGDG----IWYGRVTPEHVPPIVDRLIL 84 (97)
T ss_pred cCCEEEEEeCCCe----eEEeecCHHHHHHHHHHHhc
Confidence 458888888 54 33344 89999999988763
No 357
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=49.41 E-value=33 Score=20.60 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=16.1
Q ss_pred ccChhhHHHHHHHHHh-CCcEEEEEEeC
Q 044943 3 IHSASEFETKLNAATR-ALRLVILYFTA 29 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~-~~k~~lv~f~~ 29 (107)
+.+.+++++++..+.+ .+++.+|....
T Consensus 146 v~~~~el~~al~~a~~~~~~p~liev~~ 173 (183)
T cd02005 146 VKTEGELDEALKDALFNRDKLSLIEVIL 173 (183)
T ss_pred ecCHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 4555666666666655 55666666543
No 358
>PRK06163 hypothetical protein; Provisional
Probab=49.11 E-value=38 Score=20.93 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=19.1
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
+.+.++++.++..+.+.+++.+|.+..+
T Consensus 146 v~~~~el~~al~~a~~~~~p~lIeV~i~ 173 (202)
T PRK06163 146 AADEAHFEALVDQALSGPGPSFIAVRID 173 (202)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4566677777777776677777777544
No 359
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=49.09 E-value=75 Score=20.93 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=56.0
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC--cCch---hHHhhcccCccceEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI--DEAR---DVATRWNIGSVPTFFF 79 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--~~~~---~~~~~~~v~~~P~~~~ 79 (107)
+.+++++.+..+.+...-+ .+..+.|..-..-.....+|+... ++-++.-+. .... ++++..+ .|++.+
T Consensus 168 ~~~~~~~iv~~l~~~~~~~--~v~~TIC~aT~~RQ~a~~~La~~v-D~miVVGg~~SsNT~rL~eia~~~~---~~t~~I 241 (281)
T PRK12360 168 IPELWEDILNVIKLKSKEL--VFFNTICSATKKRQESAKELSKEV-DVMIVIGGKHSSNTQKLVKICEKNC---PNTFHI 241 (281)
T ss_pred cHHHHHHHHHHHHHhCccc--ccCCCcchhhhhHHHHHHHHHHhC-CEEEEecCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 4566777676665444333 346888888888788888888775 333332222 2222 3444443 445443
Q ss_pred E----------eCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 80 I----------KNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 80 ~----------~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
- .+-+.++-..|. +|+.+.+.+-..+
T Consensus 242 e~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l 278 (281)
T PRK12360 242 ETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKI 278 (281)
T ss_pred CChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2 234577778888 8887776665544
No 360
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=49.08 E-value=3.7 Score=26.49 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=6.8
Q ss_pred CCChhhhhhhH
Q 044943 30 TWCGPCRFISP 40 (107)
Q Consensus 30 ~~C~~C~~~~~ 40 (107)
.|||.||...|
T Consensus 256 y~Cp~CQ~~~~ 266 (269)
T PRK14811 256 HFCPQCQPLRP 266 (269)
T ss_pred EECCCCcCCCC
Confidence 36777776544
No 361
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=49.03 E-value=6.7 Score=22.86 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=11.3
Q ss_pred CChhhhhhhHHHH
Q 044943 31 WCGPCRFISPLFT 43 (107)
Q Consensus 31 ~C~~C~~~~~~~~ 43 (107)
.||.|+++.|.+.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999999873
No 362
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=48.80 E-value=45 Score=18.24 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=13.2
Q ss_pred EEEEeCCCChhhhhhh
Q 044943 24 ILYFTATWCGPCRFIS 39 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~ 39 (107)
+-.||-+-||.|+++.
T Consensus 3 v~vyyESlCPd~~~fi 18 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFI 18 (108)
T ss_pred EEEEEEecCHhHHHHH
Confidence 4568999999999864
No 363
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=48.74 E-value=53 Score=21.97 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=28.8
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE 61 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~ 61 (107)
.+|.+ .|+.|++....+..+...-..+.++.+|++.
T Consensus 79 ~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 79 MLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred EEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 56655 7889999999999988655568899999874
No 364
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=48.52 E-value=6.7 Score=22.82 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.2
Q ss_pred CChhhhhhhHHHH
Q 044943 31 WCGPCRFISPLFT 43 (107)
Q Consensus 31 ~C~~C~~~~~~~~ 43 (107)
.||.|+++.|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999999873
No 365
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=48.25 E-value=20 Score=22.30 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=20.4
Q ss_pred cCchhHHhhcccCccceEEEEeCCeEE
Q 044943 60 DEARDVATRWNIGSVPTFFFIKNGKEV 86 (107)
Q Consensus 60 ~~~~~~~~~~~v~~~P~~~~~~~g~~~ 86 (107)
+....+.++|++..+|+++. .+|+..
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCEE
Confidence 45678999999999999976 556543
No 366
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=47.91 E-value=5.5 Score=25.89 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=5.8
Q ss_pred CCCChhhhh
Q 044943 29 ATWCGPCRF 37 (107)
Q Consensus 29 ~~~C~~C~~ 37 (107)
+.|||.|++
T Consensus 265 t~~CP~CQ~ 273 (273)
T COG0266 265 TFYCPVCQK 273 (273)
T ss_pred CEeCCCCCC
Confidence 447777763
No 367
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=46.53 E-value=56 Score=18.70 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=8.8
Q ss_pred CcEEEEEEeCCCChh
Q 044943 20 LRLVILYFTATWCGP 34 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~ 34 (107)
.+.++|.+.+...-+
T Consensus 51 ~d~vvi~lGtNd~~~ 65 (150)
T cd01840 51 RKTVVIGLGTNGPFT 65 (150)
T ss_pred CCeEEEEecCCCCCC
Confidence 456666666666533
No 368
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PubMed:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=46.10 E-value=41 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=20.8
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATW 31 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~ 31 (107)
+...+-..+..+.+.++++++..|+|.
T Consensus 156 s~~a~~a~~~~A~~~~e~~v~~~w~P~ 182 (290)
T TIGR03414 156 SEAGMLAQVARAVKRKEWVVFLGWEPH 182 (290)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 334455667788889999999999985
No 369
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=45.39 E-value=55 Score=18.28 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=44.2
Q ss_pred ccChhhHHHHHHHHHhC--CcEEEEEE---eCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccc
Q 044943 3 IHSASEFETKLNAATRA--LRLVILYF---TATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVP 75 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~--~k~~lv~f---~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P 75 (107)
++++.++.+.+...... .+.+++.+ +++..-.+--..-.++.+... ++.-+.+.-....+++-++...++|
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~--~i~~viv~G~Ra~DmalRLkyAGv~ 77 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADP--NIKQVIVSGTRAEDMALRLKYAGVD 77 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcC--CCCEEEEEeeeHHHHHhHeeecCcc
Confidence 46788888888887443 34444433 455555555555666777543 2445555555677777777777777
No 370
>PLN02402 cytidine deaminase
Probab=45.00 E-value=57 Score=21.75 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=16.3
Q ss_pred cEEEEEEeCCCChhhhhhhHHH
Q 044943 21 RLVILYFTATWCGPCRFISPLF 42 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~ 42 (107)
+..-|.+..+-|+.|++++.++
T Consensus 93 ~i~~iaV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 93 HLKYVAVSAAPCGHCRQFFQEI 114 (303)
T ss_pred ceEEEEEEeCCCcccHHHHHHh
Confidence 4455566778999999996655
No 371
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=44.58 E-value=5.9 Score=25.60 Aligned_cols=6 Identities=33% Similarity=1.420 Sum_probs=2.7
Q ss_pred CChhhh
Q 044943 31 WCGPCR 36 (107)
Q Consensus 31 ~C~~C~ 36 (107)
|||.||
T Consensus 267 ~CP~CQ 272 (274)
T PRK01103 267 FCPRCQ 272 (274)
T ss_pred ECcCCC
Confidence 444444
No 372
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=44.49 E-value=42 Score=20.34 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=18.1
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTA 29 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~ 29 (107)
+.+.+++++++.++.+.++|++|.+..
T Consensus 136 v~~~~el~~al~~a~~~~~p~lIev~~ 162 (188)
T cd03371 136 VPSLEELVAALAKALAADGPAFIEVKV 162 (188)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 456677777777776666677766643
No 373
>PLN02378 glutathione S-transferase DHAR1
Probab=43.60 E-value=44 Score=20.48 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=30.5
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEECc-CchhHHhhcccCccceEE
Q 044943 30 TWCGPCRFISPLFTNLASKYTKVVFLKVDID-EARDVATRWNIGSVPTFF 78 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~v~~~P~~~ 78 (107)
.+||+|++..-.+.+..-. +.+..+|.. ..+++.+......+|++.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~l~inP~G~VPvL~ 64 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT---YKIHLINLSDKPQWFLDISPQGKVPVLK 64 (213)
T ss_pred CCCcchHHHHHHHHHcCCC---CeEEEeCcccCCHHHHHhCCCCCCCEEE
Confidence 4599999998877665433 445556653 334566666777899884
No 374
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=43.15 E-value=33 Score=20.82 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=19.6
Q ss_pred hhCCCeEEEE---EECcCchhHHhhc-ccCccceEEEEeCCe
Q 044943 47 SKYTKVVFLK---VDIDEARDVATRW-NIGSVPTFFFIKNGK 84 (107)
Q Consensus 47 ~~~~~~~~~~---i~~~~~~~~~~~~-~v~~~P~~~~~~~g~ 84 (107)
..+.+++|+. +|.+..-.+. .| .-..+|.++++++|=
T Consensus 127 ~~Fkd~qFf~GeSmd~dgmv~l~-~Yredg~tP~~~f~KdGL 167 (172)
T PTZ00151 127 ENFDDFEFYLGESLDCEAGLIYG-YYKGEELAPRFVYIKDGL 167 (172)
T ss_pred HhcCCceEeecCCCCCCccEEEE-eecCCCcceEEEEEcccc
Confidence 3455666663 2333222221 12 123689999998873
No 375
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=43.15 E-value=49 Score=21.62 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=26.2
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCCh
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCG 33 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~ 33 (107)
.+.+.++++.++.++.+.+.+.+|.+..+ |+
T Consensus 173 ~v~~~~el~~al~~Al~~~Gp~lIeV~~~-c~ 203 (277)
T PRK09628 173 SVIDPQKLEKLLVKGFSHKGFSFFDVFSN-CH 203 (277)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEcCC-CC
Confidence 36778899999999999999999999766 44
No 376
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=42.84 E-value=54 Score=20.75 Aligned_cols=29 Identities=7% Similarity=-0.092 Sum_probs=23.5
Q ss_pred ccChhhHHHHHHHHHh-CCcEEEEEEeCCC
Q 044943 3 IHSASEFETKLNAATR-ALRLVILYFTATW 31 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~-~~k~~lv~f~~~~ 31 (107)
+.+.+++..++.++.+ .+.|.+|....+.
T Consensus 175 v~~~~~l~~al~~al~~~~GP~lI~v~i~c 204 (237)
T cd02018 175 PALKKHFLKVVKEAISRTDGPTFIHAYTPC 204 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5677888999998887 7888988888753
No 377
>KOG3782 consensus Predicted membrane protein, contains type II SA sequence [General function prediction only]
Probab=42.66 E-value=77 Score=19.22 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=31.9
Q ss_pred CChhhhhhhHHHHH-HHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCC--CHHHHHHHHHHHh
Q 044943 31 WCGPCRFISPLFTN-LASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA--DKSALERKIAQHA 105 (107)
Q Consensus 31 ~C~~C~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~i~~~~ 105 (107)
-|+.|+.+-..++. +++.-|. +.+. +-.+.+-.+|.......++ ++..|.+.++++.
T Consensus 26 ~CgaC~alVtelE~~IA~vDPk-K~i~-----------------vgsFR~~p~G~q~~~kV~yarSE~hLTEl~E~iC 85 (189)
T KOG3782|consen 26 KCGACKALVTELEEAIAKVDPK-KMID-----------------VGSFRLDPQGNQISKKVRYARSEMHLTELMEKIC 85 (189)
T ss_pred ccchHHHHHHHHHHHHHhcCch-heee-----------------ecceEECCCCCeeeeeeccchhHHHHHHHHHHHH
Confidence 69999999888865 3333331 1111 1123333455555544565 6777777776654
No 378
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.45 E-value=1e+02 Score=20.50 Aligned_cols=69 Identities=23% Similarity=0.221 Sum_probs=44.5
Q ss_pred HHHHHhCCcEEEEE---EeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEE
Q 044943 13 LNAATRALRLVILY---FTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDK 88 (107)
Q Consensus 13 ~~~~~~~~k~~lv~---f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 88 (107)
+..+...+.+++++ |.|=.=..=.++...+.++.++.. .+.|+.-|+++.-.++. .+.++++|+.+..
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLad--------ri~vm~~G~i~Q~ 217 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLAD--------RIAVMDAGEIVQY 217 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhc--------eEEEecCCeEEEe
Confidence 33444455555554 444443334455567778887776 49999999998877776 3566778877765
Q ss_pred E
Q 044943 89 V 89 (107)
Q Consensus 89 ~ 89 (107)
.
T Consensus 218 ~ 218 (309)
T COG1125 218 D 218 (309)
T ss_pred C
Confidence 4
No 379
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=41.64 E-value=30 Score=16.89 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=27.9
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc--hhHHhhcccCccceEEE
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA--RDVATRWNIGSVPTFFF 79 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~P~~~~ 79 (107)
++.+.|+.|++.+-.+....-. +....++.... .++........+|++..
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~---~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 55 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVE---YEDVRITYEEWPELDLKPTLPFGQLPVLEI 55 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCC---cEEEEeCHHHhhhhhhccCCcCCCCCEEEE
Confidence 4456788888877777664433 23344443221 22334445668898853
No 380
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=41.13 E-value=42 Score=16.98 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=35.1
Q ss_pred CCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHh---hcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHH
Q 044943 29 ATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVAT---RWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 103 (107)
Q Consensus 29 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~ 103 (107)
.+||++|++.+-.+....-. +....++......... .-....+|+++. .+|..+. ....+.+.+.+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHH
Confidence 36899999988887774333 3444555433222222 223567888743 3244322 34455555544
No 381
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=41.13 E-value=91 Score=19.62 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=52.7
Q ss_pred EEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc---hhHHhhcccCccceEEEEeCCeEEEEEcCC-CHHHH
Q 044943 22 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA---RDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSAL 97 (107)
Q Consensus 22 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 97 (107)
+.+-.++--.|+|=+.+....+-+.++||++.+..-|..-. +-+++-..+..+=.+.++-.|.......|. .+.-+
T Consensus 70 ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~P~iw 149 (226)
T KOG3286|consen 70 PTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGYPSIW 149 (226)
T ss_pred CcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCCCcHHH
Confidence 55666677789998888888888889999988887776532 123444455555555555677777777787 55544
Q ss_pred HH
Q 044943 98 ER 99 (107)
Q Consensus 98 ~~ 99 (107)
..
T Consensus 150 qh 151 (226)
T KOG3286|consen 150 QH 151 (226)
T ss_pred HH
Confidence 43
No 382
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=40.81 E-value=56 Score=19.86 Aligned_cols=27 Identities=7% Similarity=0.162 Sum_probs=18.6
Q ss_pred ccChhhHHHHHHHHHh---CCcEEEEEEeC
Q 044943 3 IHSASEFETKLNAATR---ALRLVILYFTA 29 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~---~~k~~lv~f~~ 29 (107)
+.+.++++.++.++.. .++|++|.+.-
T Consensus 149 v~~~~el~~al~~a~~~~~~~~p~liev~v 178 (196)
T cd02013 149 VDKPEDVGPALQKAIAMMAEGKTTVIEIVC 178 (196)
T ss_pred ECCHHHHHHHHHHHHhcCCCCCeEEEEEEe
Confidence 4566777777777766 66777777754
No 383
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=40.25 E-value=85 Score=19.02 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 76 TFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 76 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
++++|..|+++-. |. +.+++...++++.
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~ 168 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKLL 168 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 4555577887755 66 8888887776653
No 384
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=40.17 E-value=8.3 Score=24.95 Aligned_cols=6 Identities=33% Similarity=1.436 Sum_probs=3.0
Q ss_pred CChhhh
Q 044943 31 WCGPCR 36 (107)
Q Consensus 31 ~C~~C~ 36 (107)
|||.||
T Consensus 266 ~CP~CQ 271 (272)
T PRK14810 266 YCPHCQ 271 (272)
T ss_pred ECcCCc
Confidence 455554
No 385
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=39.91 E-value=1e+02 Score=20.20 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc
Q 044943 6 ASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID 60 (107)
Q Consensus 6 ~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~ 60 (107)
.+++...+..+.+.+-- +|...+. .+...+.+++++||+..|+.+|..
T Consensus 47 ~~~~~~~~~~~~~~g~d-lIi~~g~------~~~~~~~~vA~~yPd~~F~~~d~~ 94 (306)
T PF02608_consen 47 DADYEEAIRQLADQGYD-LIIGHGF------EYSDALQEVAKEYPDTKFIIIDGY 94 (306)
T ss_dssp CHHHHHHHHHHHHTT-S-EEEEESG------GGHHHHHHHHTC-TTSEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCC-EEEEccH------HHHHHHHHHHHHCCCCEEEEEecC
Confidence 56777888877665533 3333322 345677889999999999988753
No 386
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=39.81 E-value=1e+02 Score=19.75 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=43.4
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcC
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 91 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 91 (107)
-++|.++.|--|..+---.....+.+.....+ -+.|-.-++.+...+|. .++++.+|+++.....
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD--------rvivlh~Gevv~~gs~ 217 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD--------RVIVLHKGEVVLEGSI 217 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh--------eEEEEecCcEEEcCCH
Confidence 36788888888877655555555555443332 36666667777777877 5778899998876543
No 387
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=39.71 E-value=48 Score=15.96 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=27.3
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc----CchhHHhhcccCccceEE
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDID----EARDVATRWNIGSVPTFF 78 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~~~P~~~ 78 (107)
++...|+.|.+.+-.+....- .+....++.. ..+++.+......+|++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV 56 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCCCCCEEE
Confidence 344556667766555555322 2444555542 234555555677899875
No 388
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=39.45 E-value=19 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=21.2
Q ss_pred cCchhHHhhcccCccceEEEE-eCCeEEE
Q 044943 60 DEARDVATRWNIGSVPTFFFI-KNGKEVD 87 (107)
Q Consensus 60 ~~~~~~~~~~~v~~~P~~~~~-~~g~~~~ 87 (107)
+....+.++|++..+|.++.- .+|+...
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 455679999999999999862 5666443
No 389
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=39.40 E-value=1.6e+02 Score=21.88 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=53.9
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC--cCch---hHHhhcccCccceEEE
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI--DEAR---DVATRWNIGSVPTFFF 79 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--~~~~---~~~~~~~v~~~P~~~~ 79 (107)
+.+++.+.+..+.+....+ .++.+.|..-+.-.....+++... ++-++.-+. .... ++|+.. +.|++.+
T Consensus 165 ~~~~~~~~~~~l~~~~~~~--~~~~tiC~at~~Rq~a~~~la~~~-d~~~vvGg~~SsNt~~L~~i~~~~---~~~~~~i 238 (647)
T PRK00087 165 KQENFEKVLKELKKKGKEV--KVFNTICNATEVRQEAAEKLAKKV-DVMIVVGGKNSSNTTKLYEICKSN---CTNTIHI 238 (647)
T ss_pred cHHHHHHHHHHHHHhCCCc--ccCCCcchhhhhHHHHHHHHHhhC-CEEEEECCCCCccHHHHHHHHHHH---CCCEEEE
Confidence 4556677666665544433 336788888887778888888764 333332222 2222 344443 3455543
Q ss_pred E----------eCCeEEEEEcCC-CHHHHHHHHHHH
Q 044943 80 I----------KNGKEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 80 ~----------~~g~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
= .+-+.++-..|. +|+.+.+.+...
T Consensus 239 e~~~el~~~~~~~~~~vgitagaStP~~~i~~v~~~ 274 (647)
T PRK00087 239 ENAGELPEEWFKGVKIIGVTAGASTPDWIIEEVIKK 274 (647)
T ss_pred CChHHCCHHHhCCCCEEEEEeccCCCHHHHHHHHHH
Confidence 2 234567778888 787666655443
No 390
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=38.88 E-value=56 Score=21.10 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=31.1
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhcccCccceEEE
Q 044943 30 TWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~ 79 (107)
.+||+|++..-.+.+..-. +.+..+|... .+.+.+.-....+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi~---ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP---YDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC---CEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 4699999998888765433 4455666543 344555556678999864
No 391
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.53 E-value=1.5e+02 Score=21.29 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=16.3
Q ss_pred HHHHHHHhhCCCeEEEEEECcC
Q 044943 40 PLFTNLASKYTKVVFLKVDIDE 61 (107)
Q Consensus 40 ~~~~~~~~~~~~~~~~~i~~~~ 61 (107)
...+++.+.+|+..+..+|.|.
T Consensus 273 ~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 273 QVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred HHHHHHHhhCCCCcEEEEeccc
Confidence 3446677788888889888764
No 392
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=38.49 E-value=53 Score=16.14 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=34.2
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC----chhHHhhcccCccceEEEEeCCe
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE----ARDVATRWNIGSVPTFFFIKNGK 84 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~~~~g~ 84 (107)
.++.+.++.|+++.-.+....-. +....++... .+.+.+......+|++.. +|.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 60 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDF 60 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCE
Confidence 46677889999887777665433 3445555432 235556667789998853 554
No 393
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=38.41 E-value=46 Score=24.30 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=29.9
Q ss_pred cccCccceEEEEeCCeEEEEEcCC-CHHHHHHHHHHHhCC
Q 044943 69 WNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAGQ 107 (107)
Q Consensus 69 ~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 107 (107)
++....|..+++++|+........ +.+...+.|.+.+++
T Consensus 232 l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 232 LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 778899999999999876655444 777788888777653
No 394
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=37.79 E-value=1.5e+02 Score=21.14 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=40.1
Q ss_pred ccChhhHHHHHHHHH--hCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 3 IHSASEFETKLNAAT--RALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 3 i~~~~~~~~~~~~~~--~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
.++++.+++.+..+. ..++ +++.|....-. =+.-.+.+..++..+.++.++.-|-
T Consensus 340 AHnPd~le~~L~~~~~~~~g~-li~VfG~gGDr-D~~kr~~mg~ia~~~ad~vivt~dn 396 (475)
T COG0769 340 AHNPDGLEKALRAVRLHAAGR-LIVVFGCGGDR-DKSKRPDMGAIAEQLADIVIVTSDN 396 (475)
T ss_pred ccChHHHHHHHHHHHhhcCCc-EEEEECccCCC-CcccccchHHHHHhcCCcEEEcCCC
Confidence 468889999998886 2344 66777665555 5566788899999988877776654
No 395
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=37.64 E-value=9 Score=24.92 Aligned_cols=6 Identities=50% Similarity=2.007 Sum_probs=2.7
Q ss_pred CChhhh
Q 044943 31 WCGPCR 36 (107)
Q Consensus 31 ~C~~C~ 36 (107)
|||.||
T Consensus 276 ~CP~CQ 281 (282)
T PRK13945 276 WCPNCQ 281 (282)
T ss_pred ECCCCc
Confidence 444444
No 396
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=37.58 E-value=61 Score=19.75 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=15.7
Q ss_pred ccChhhHHHHHHHHHh----CCcEEEEEEe
Q 044943 3 IHSASEFETKLNAATR----ALRLVILYFT 28 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~----~~k~~lv~f~ 28 (107)
+.+.+++++++.++.+ .++|.+|.+-
T Consensus 163 v~~~~el~~al~~a~~~~~~~~~p~liev~ 192 (202)
T cd02006 163 VTKPEELAAAFEQAKKLMAEHRVPVVVEAI 192 (202)
T ss_pred ECCHHHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 4556666666666653 4566666654
No 397
>PRK15113 glutathione S-transferase; Provisional
Probab=37.46 E-value=97 Score=18.89 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=35.5
Q ss_pred cEEEEEEeCC--CChhhhhhhHHHHHHHhhCCCeEEEEEECcC----chhHHhhcccCccceEEE
Q 044943 21 RLVILYFTAT--WCGPCRFISPLFTNLASKYTKVVFLKVDIDE----ARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 21 k~~lv~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~ 79 (107)
++.+..++.+ .|++|++..-.+.+..-. +.+..+|... .+++.+......+|++..
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~ 64 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH 64 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE
Confidence 3445555554 699998887777664333 4555666532 355666667778999863
No 398
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=37.10 E-value=1.4e+02 Score=20.58 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=33.3
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHh
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLAS 47 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~ 47 (107)
+++.++..+.+.++.....+..|..|-++-++.+...+.++.+..
T Consensus 54 ~~t~~~i~~~~~~an~~~~c~gvi~wMhTfSpakmwI~gl~~l~k 98 (359)
T PF02610_consen 54 VTTPEEITRVCKEANADEDCDGVITWMHTFSPAKMWIPGLQRLQK 98 (359)
T ss_dssp B-SHHHHHHHHHHHHH-TTEEEEEEEESS---THHHHHHHHH--S
T ss_pred cCCHHHHHHHHHHhhccCCccEEeehhhhhccHHHHHHHHHHhCC
Confidence 567888888888887788999999999999999999999988764
No 399
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=36.89 E-value=63 Score=21.01 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=24.8
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhh
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATWCGPCRF 37 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~ 37 (107)
.+.++.-+.+.+.++.|+||+|..-.-+.|++..
T Consensus 72 ~~~~~~~~~l~~~l~~g~pv~~~~D~~~lpy~~~ 105 (317)
T PF14399_consen 72 SSPDEAWEELKEALDAGRPVIVWVDMYYLPYRPN 105 (317)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEeccccCCCCcc
Confidence 3566777788888899999999865555555544
No 400
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=36.66 E-value=60 Score=16.20 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=40.5
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc----CchhHHhhcccCccceEEEEeC--CeEEEEEcCCCHHHHHHH
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTKVVFLKVDID----EARDVATRWNIGSVPTFFFIKN--GKEVDKVVGADKSALERK 100 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~~~P~~~~~~~--g~~~~~~~g~~~~~l~~~ 100 (107)
+|...++.|++..-.++...-. +....++.. ..+++.+......+|.+.. .+ |..+. ....+.+.
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~g~~l~-----eS~aI~~y 74 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLP---YEIHPVDISKGEQKKPEFLKINPNGRIPAIVD-HNGTPLTVF-----ESGAILLY 74 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCC---cEEEEecCcCCcccCHHHHHhCcCCCCCEEEe-CCCCceEEE-----cHHHHHHH
Confidence 4444459999988888775443 344455542 2345555556678998743 22 33221 34556666
Q ss_pred HHHHhC
Q 044943 101 IAQHAG 106 (107)
Q Consensus 101 i~~~~~ 106 (107)
+.+..+
T Consensus 75 L~~~~~ 80 (81)
T cd03048 75 LAEKYD 80 (81)
T ss_pred HHHHhC
Confidence 665544
No 401
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=36.59 E-value=1.5e+02 Score=20.66 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC----CeEEEEEECc
Q 044943 10 ETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT----KVVFLKVDID 60 (107)
Q Consensus 10 ~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~~ 60 (107)
-+.+++++++|+...+=|+.+. ..+.+.++...++ ++++..+|.+
T Consensus 133 ~df~~kak~eGkIr~~GFSfHg------s~e~~~~iv~a~~~dfvqlq~ny~d~~ 181 (391)
T COG1453 133 FDFLEKAKAEGKIRNAGFSFHG------STEVFKEIVDAYPWDFVQLQYNYIDQK 181 (391)
T ss_pred HHHHHHHHhcCcEEEeeecCCC------CHHHHHHHHhcCCcceEEeeeeeeccc
Confidence 4567788889999999998876 4567777777766 3444455543
No 402
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=36.56 E-value=95 Score=18.50 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECcC
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDE 61 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~ 61 (107)
..|.+++..+.+.+++++..+.... -.|.++++.+. +++.++.++.+.
T Consensus 112 ~~F~~~v~~~l~s~~~vi~vv~~~~------~~~~l~~i~~~-~~~~i~~vt~~N 159 (168)
T PF03266_consen 112 PGFREAVEKLLDSNKPVIGVVHKRS------DNPFLEEIKRR-PDVKIFEVTEEN 159 (168)
T ss_dssp CHHHHHHHHHHCTTSEEEEE--SS--------SCCHHHHHTT-TTSEEEE--TTT
T ss_pred HHHHHHHHHHHcCCCcEEEEEecCC------CcHHHHHHHhC-CCcEEEEeChhH
Confidence 3577778888888888888776552 33445555554 567888776553
No 403
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=36.32 E-value=1.1e+02 Score=19.15 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEE
Q 044943 21 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVD 58 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~ 58 (107)
.-.+..|..+.|+.|......+.. ....+.++-++
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvg 143 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVG 143 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEec
Confidence 334666777999999988777633 22245566555
No 404
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=36.24 E-value=26 Score=16.08 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=13.9
Q ss_pred HHHHHHHhCCcEEEEEEeCCCChh
Q 044943 11 TKLNAATRALRLVILYFTATWCGP 34 (107)
Q Consensus 11 ~~~~~~~~~~k~~lv~f~~~~C~~ 34 (107)
..+....+..-..++-.+++.|.+
T Consensus 6 ~Sfta~V~~k~isL~~L~SDGCiy 29 (44)
T PF08168_consen 6 KSFTASVDRKFISLMSLSSDGCIY 29 (44)
T ss_pred hhhheeeecceEEEEEeccCCcee
Confidence 334444444445566688988754
No 405
>PLN00062 TATA-box-binding protein; Provisional
Probab=35.21 E-value=1.1e+02 Score=18.71 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=18.0
Q ss_pred eEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 76 TFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 76 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
++++|..|+++-. |. +.+++.+.++.++
T Consensus 140 ~~liF~sGkvvit--Gaks~~~~~~ai~~i~ 168 (179)
T PLN00062 140 VLLIFVSGKIVIT--GAKVREEIYTAFENIY 168 (179)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 3445567776654 66 7888887776543
No 406
>PRK00394 transcription factor; Reviewed
Probab=34.51 E-value=1.1e+02 Score=18.62 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=18.4
Q ss_pred eEEEEeCCeEEEEEcCC-CHHHHHHHHHHH
Q 044943 76 TFFFIKNGKEVDKVVGA-DKSALERKIAQH 104 (107)
Q Consensus 76 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 104 (107)
++++|..|+++-. |. +.+++.+.++++
T Consensus 141 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i 168 (179)
T PRK00394 141 VVLLFGSGKLVIT--GAKSEEDAEKAVEKI 168 (179)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHH
Confidence 5555677877654 66 788777777655
No 407
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=34.19 E-value=1.1e+02 Score=18.57 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=29.0
Q ss_pred EEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc
Q 044943 22 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID 60 (107)
Q Consensus 22 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~ 60 (107)
.+-+.+.++.|+....+...++.-....+++.-+.+++.
T Consensus 116 ~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~ 154 (174)
T TIGR03406 116 DIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELV 154 (174)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEE
Confidence 456677889999999988888776666677666666544
No 408
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=34.13 E-value=1.1e+02 Score=18.49 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=18.0
Q ss_pred eEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 76 TFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 76 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
++++|..|+++-. |. +++++.+.++.+.
T Consensus 141 t~lIF~sGkvvit--Gaks~~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKIVIT--GAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 3445567776654 66 7888877776543
No 409
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=33.78 E-value=40 Score=21.30 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=17.8
Q ss_pred hCCcEEEEEEeCCCChhhhhhh
Q 044943 18 RALRLVILYFTATWCGPCRFIS 39 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C~~C~~~~ 39 (107)
+.++.-+-.||-+-||+|+++.
T Consensus 37 ~~~~v~ItlyyEaLCPdc~~Fi 58 (220)
T KOG3160|consen 37 QAPKVNITLYYEALCPDCSKFI 58 (220)
T ss_pred cCCeeEEEEEEEecCccHHHHH
Confidence 3446778888999999999876
No 410
>PF14369 zf-RING_3: zinc-finger
Probab=33.56 E-value=12 Score=16.17 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=6.5
Q ss_pred CCChhhhhhh
Q 044943 30 TWCGPCRFIS 39 (107)
Q Consensus 30 ~~C~~C~~~~ 39 (107)
-||..|++.-
T Consensus 3 ywCh~C~~~V 12 (35)
T PF14369_consen 3 YWCHQCNRFV 12 (35)
T ss_pred EeCccCCCEe
Confidence 4777777543
No 411
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=33.47 E-value=1.1e+02 Score=18.48 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=18.4
Q ss_pred EEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 77 FFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 77 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
+++|..|+++-. |. +.+++.+.++.++
T Consensus 141 ~liF~sGkvvit--Gaks~~~~~~a~~~i~ 168 (174)
T cd04516 141 LLIFVSGKIVLT--GAKSREEIYQAFENIY 168 (174)
T ss_pred EEEeCCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 445577877654 66 8888888777653
No 412
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=33.22 E-value=15 Score=22.85 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=9.2
Q ss_pred CCChhhhhhhH
Q 044943 30 TWCGPCRFISP 40 (107)
Q Consensus 30 ~~C~~C~~~~~ 40 (107)
=|||.|+.+..
T Consensus 12 GWCPnaka~e~ 22 (205)
T PF07895_consen 12 GWCPNAKALET 22 (205)
T ss_pred CcCcCcCcccc
Confidence 39999998876
No 413
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.91 E-value=1.6e+02 Score=20.15 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=42.8
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
.+.++.++.+..+...+-.++.-+|...-|.-.+++..+. ...+.++.-+.++.
T Consensus 107 ~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~Gdvk~v~~~~ 160 (351)
T KOG2741|consen 107 MNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVLGDVKSVEVEF 160 (351)
T ss_pred CCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--ccccccceEEEEec
Confidence 4678899999998888877777788888888888888877 66667777777754
No 414
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.88 E-value=19 Score=17.58 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=18.4
Q ss_pred HHHHHhCCcEEEEEEe-----------CCCChhhhhhhHHH
Q 044943 13 LNAATRALRLVILYFT-----------ATWCGPCRFISPLF 42 (107)
Q Consensus 13 ~~~~~~~~k~~lv~f~-----------~~~C~~C~~~~~~~ 42 (107)
+.+..-.|.+|+.... .|-||.|+.....|
T Consensus 17 I~esav~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 17 IAESAVMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred HHHHHhcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 3344456777766554 34599998776543
No 415
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=32.69 E-value=93 Score=20.08 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=25.4
Q ss_pred cCchhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHH
Q 044943 60 DEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIA 102 (107)
Q Consensus 60 ~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~ 102 (107)
+-.++..+++++.-+|..+.+.+ +........+.+++.+.++
T Consensus 10 dl~~~~~~~~~I~vvPl~I~~~~-~~y~D~~~i~~~~~y~~~~ 51 (275)
T TIGR00762 10 DLPPELIEEYGITVVPLTVIIDG-KTYRDGVDITPEEFYEKLK 51 (275)
T ss_pred CCCHHHHHHcCCEEEEEEEEECC-EEeecCCCCCHHHHHHHHH
Confidence 44567788899999999988753 3222211225555555553
No 416
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=32.57 E-value=14 Score=16.28 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=4.2
Q ss_pred CCChhhhhhh
Q 044943 30 TWCGPCRFIS 39 (107)
Q Consensus 30 ~~C~~C~~~~ 39 (107)
-||.+|....
T Consensus 4 yyCdyC~~~~ 13 (38)
T PF06220_consen 4 YYCDYCKKYL 13 (38)
T ss_dssp -B-TTT--B-
T ss_pred eeccccccee
Confidence 4799998776
No 417
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=32.42 E-value=82 Score=16.52 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=17.0
Q ss_pred hHHhhcccCccceEEEEeCCeEEE
Q 044943 64 DVATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
..++.+++...+++++..+|.++.
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 446778886656676668888885
No 418
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=32.12 E-value=32 Score=19.56 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCcEEEEEEeCC----CChhhhhhhHHHHHHHh
Q 044943 19 ALRLVILYFTAT----WCGPCRFISPLFTNLAS 47 (107)
Q Consensus 19 ~~k~~lv~f~~~----~C~~C~~~~~~~~~~~~ 47 (107)
.++..+..||.+ ||..|..-.+.+..++-
T Consensus 56 s~~~~~~AFWn~~e~~wCEdCdddLQ~yhslil 88 (120)
T PF06279_consen 56 SKKNLMTAFWNECEQRWCEDCDDDLQQYHSLIL 88 (120)
T ss_pred eccccEEEeccccchhhhhcchHHHHHHhheeE
Confidence 467788899976 89999887777766543
No 419
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=32.12 E-value=99 Score=17.38 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=45.4
Q ss_pred cEEEEEEe-CCCChhhhhhhHHHHHHHhh----CC----C--eEE-EEEECcCchhHHhhc-ccC-ccceEEEEe---CC
Q 044943 21 RLVILYFT-ATWCGPCRFISPLFTNLASK----YT----K--VVF-LKVDIDEARDVATRW-NIG-SVPTFFFIK---NG 83 (107)
Q Consensus 21 k~~lv~f~-~~~C~~C~~~~~~~~~~~~~----~~----~--~~~-~~i~~~~~~~~~~~~-~v~-~~P~~~~~~---~g 83 (107)
.|.+|.|. +..-+.-+..++.++.++.. +. + +.| +..+-+ ..+..+.| +.. ..|.++++. .+
T Consensus 15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede-~tdsLRDf~nL~d~~P~LviLDip~r~ 93 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD-MTDSLRDYTNLPEAAPLLTILDMSARA 93 (116)
T ss_pred CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch-HHHHHHHhcCCCccCceEEEEeccccc
Confidence 34444454 44444566666666555543 21 1 333 333333 33333333 443 688888883 34
Q ss_pred eEEEEEcCCCHHHHHHHHHHHh
Q 044943 84 KEVDKVVGADKSALERKIAQHA 105 (107)
Q Consensus 84 ~~~~~~~g~~~~~l~~~i~~~~ 105 (107)
+.+....-.+++.+.+++.+++
T Consensus 94 ~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 94 KYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred eEeCchHhcCHHHHHHHHHHhh
Confidence 4444443348889999988875
No 420
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=32.11 E-value=1.6e+02 Score=19.64 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=49.2
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEE-C-c-CchhHHhhccc-CccceEEE
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVD-I-D-EARDVATRWNI-GSVPTFFF 79 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~-~-~-~~~~~~~~~~v-~~~P~~~~ 79 (107)
++.+++...++.+. .....|..|++.|..=..+.|......-+. .+-+...| . + ....+..+|.. .++|.+..
T Consensus 60 KSa~~~~sDLe~l~--~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv-~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~ 136 (305)
T COG5309 60 KSADQVASDLELLA--SYTHSIRTYGSDCNTLENVLPAAEASGFKV-FLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTT 136 (305)
T ss_pred cCHHHHHhHHHHhc--cCCceEEEeeccchhhhhhHHHHHhcCceE-EEEEeeccchhhhHHHHHHHHHhccCCCCceEE
Confidence 35566666776652 333377788876665554444443322000 01111111 1 1 11134455543 47787777
Q ss_pred EeCCeEEEEEcCCCHHHHHHHHHHH
Q 044943 80 IKNGKEVDKVVGADKSALERKIAQH 104 (107)
Q Consensus 80 ~~~g~~~~~~~g~~~~~l~~~i~~~ 104 (107)
+-=|++.-...-.+.++|.+.|.+.
T Consensus 137 v~VGnEal~r~~~tasql~~~I~~v 161 (305)
T COG5309 137 VTVGNEALNRNDLTASQLIEYIDDV 161 (305)
T ss_pred EEechhhhhcCCCCHHHHHHHHHHH
Confidence 6545544433233888888887654
No 421
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=31.23 E-value=1.9e+02 Score=20.90 Aligned_cols=70 Identities=13% Similarity=0.251 Sum_probs=43.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCC--C--eEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEc--CC-CHHH
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYT--K--VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVV--GA-DKSA 96 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~--g~-~~~~ 96 (107)
++.+=-|+-.-..+....+-++.+++. + +.|+.-.+++..+++. .+.++++|+.+.... +. +.++
T Consensus 166 llIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~D--------ritVlRDG~~v~~~~~~~~~~~~~ 237 (500)
T COG1129 166 VLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIAD--------RITVLRDGRVVGTRPTAAETSEDE 237 (500)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcC--------EEEEEeCCEEeeecccccCCCHHH
Confidence 666777776655555555444444332 3 5555445555555555 577889999998776 23 7888
Q ss_pred HHHHH
Q 044943 97 LERKI 101 (107)
Q Consensus 97 l~~~i 101 (107)
+.+.+
T Consensus 238 lv~~M 242 (500)
T COG1129 238 LVRLM 242 (500)
T ss_pred HHHHh
Confidence 77765
No 422
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=31.11 E-value=1.4e+02 Score=18.95 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=34.3
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEECcC-chhHHhhcccCccceEEEEeCCeE
Q 044943 30 TWCGPCRFISPLFTNLASKYTKVVFLKVDIDE-ARDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
..||+|++..-.+....- .+.+..+|... .+.+.+......+|+++- +|..
T Consensus 17 ~~cp~~~rv~i~L~ekgi---~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~ 68 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV---VFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEV 68 (236)
T ss_pred CCCHhHHHHHHHHHHcCC---CcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEE
Confidence 578999998887776211 36667777654 356666667778998854 4543
No 423
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.09 E-value=73 Score=16.79 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=17.1
Q ss_pred hHHhhcccCccceEEEEeCCeEEE
Q 044943 64 DVATRWNIGSVPTFFFIKNGKEVD 87 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~~g~~~~ 87 (107)
.-++.+++...+++++..+|.++.
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 345667777667777778898885
No 424
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=31.07 E-value=1.6e+02 Score=19.44 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=34.4
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhh--hhhhHHHHHHHhhCC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPC--RFISPLFTNLASKYT 50 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C--~~~~~~~~~~~~~~~ 50 (107)
++.+.+.....+..+.+.+.|+++.++.....+- ..+.+.+..+++...
T Consensus 23 N~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (287)
T PF01116_consen 23 NVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEAS 73 (287)
T ss_dssp E-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcC
Confidence 4567788899999999999999999986544332 344556677777764
No 425
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=31.03 E-value=1.4e+02 Score=18.85 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=38.1
Q ss_pred CCCChhhhhhhHHH-HHHHhhC-CCeEEEEEECcC---------------------chhHHhhccc-----CccceEEEE
Q 044943 29 ATWCGPCRFISPLF-TNLASKY-TKVVFLKVDIDE---------------------ARDVATRWNI-----GSVPTFFFI 80 (107)
Q Consensus 29 ~~~C~~C~~~~~~~-~~~~~~~-~~~~~~~i~~~~---------------------~~~~~~~~~v-----~~~P~~~~~ 80 (107)
...|+.|-.+...+ ..+.-.. .++.|+.|.-.- ..++...|++ ...|.+-+|
T Consensus 82 ~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF 161 (211)
T PF05988_consen 82 DEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVF 161 (211)
T ss_pred CCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCcccccccceeccCCCceeEEEE
Confidence 45799999999888 4443332 357888776421 1234444555 567777666
Q ss_pred -e-CCeEEEEEcC
Q 044943 81 -K-NGKEVDKVVG 91 (107)
Q Consensus 81 -~-~g~~~~~~~g 91 (107)
+ +|++...+..
T Consensus 162 ~Rdg~~VfhTyst 174 (211)
T PF05988_consen 162 LRDGGRVFHTYST 174 (211)
T ss_pred EEcCCEEEEEeec
Confidence 5 4556555543
No 426
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.78 E-value=1.5e+02 Score=18.89 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEE
Q 044943 7 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKV 57 (107)
Q Consensus 7 ~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i 57 (107)
+++.+.+..+..++|.++|-|..-.-|.-....+.++-+..- +..++++
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~g--G~dIIEL 51 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSG--GSDIIEL 51 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcC--CcCeEEe
Confidence 578888999999999999999887778777777777766654 3444444
No 427
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=30.38 E-value=1.3e+02 Score=19.80 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=26.1
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChh
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGP 34 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~ 34 (107)
+.+.+++.+.+.++.+.+.+.+|....+ |+.
T Consensus 166 ~~~~~~l~~~i~~Al~~~Gp~lIeV~~p-C~~ 196 (280)
T PRK11869 166 SGDIEETKEILKEAIKHKGLAIVDIFQP-CVS 196 (280)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEECC-CCC
Confidence 4467899999999999999999999987 444
No 428
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=30.24 E-value=39 Score=16.13 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=12.5
Q ss_pred CchhHHhhcccCccce
Q 044943 61 EARDVATRWNIGSVPT 76 (107)
Q Consensus 61 ~~~~~~~~~~v~~~P~ 76 (107)
.-...|.++||..+|.
T Consensus 31 ~LKr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 31 TLKRRCRRLGIPRWPY 46 (52)
T ss_pred HHHHHHHHcCCCCCCc
Confidence 3457789999999984
No 429
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=30.16 E-value=98 Score=16.75 Aligned_cols=66 Identities=8% Similarity=0.146 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHHHhC
Q 044943 36 RFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 106 (107)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (107)
..+...++++.+. +++.++-++-+-...+..... ...|.++.+.+.. ...+...+.+.+.+++.+|
T Consensus 30 ee~~~~l~~l~~~-~d~gII~ite~~~~~i~~~i~-~~~P~Ii~IP~~~---g~~~~~~~~i~~~v~raiG 95 (100)
T PRK03957 30 EEAKNAIKELVEN-DEIGIIIITERIAEEIRDLIS-VALPIIVEIPDKS---GSIERENDPVKELVRRAIG 95 (100)
T ss_pred HHHHHHHHHHhhC-CCeEEEEEcHHHHHHHHHHHh-cCCCEEEEECCCC---CCCccchHHHHHHHHHHhC
Confidence 3445555555543 356666665443333333223 6779999775421 0011134678888888876
No 430
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=30.06 E-value=1.3e+02 Score=18.18 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=18.0
Q ss_pred eEEEEeCCeEEEEEcCC-CHHHHHHHHHHHh
Q 044943 76 TFFFIKNGKEVDKVVGA-DKSALERKIAQHA 105 (107)
Q Consensus 76 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 105 (107)
++++|..|+++-. |. +++++.+.++.++
T Consensus 141 t~lIF~sGkivit--Gaks~~~~~~a~~~i~ 169 (174)
T cd04517 141 TLSIFSTGSVTVT--GARSMEDVREAVEKIY 169 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 3444456766544 66 8888888877653
No 431
>PHA02131 hypothetical protein
Probab=29.60 E-value=77 Score=15.36 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=19.7
Q ss_pred cCccceEEEEeCCeEEEEEcCCCHHHHH
Q 044943 71 IGSVPTFFFIKNGKEVDKVVGADKSALE 98 (107)
Q Consensus 71 v~~~P~~~~~~~g~~~~~~~g~~~~~l~ 98 (107)
..++...++|++|++.+...-.+..+++
T Consensus 26 ~~g~~c~imfk~~~v~dctfk~dtaqfr 53 (70)
T PHA02131 26 RFGISCWIMFKNDQVIDCTFKNDTAQFR 53 (70)
T ss_pred ecceEEEEEEcCCCEEEeeecCcHHHHh
Confidence 3467788999999999876555444443
No 432
>PRK09027 cytidine deaminase; Provisional
Probab=29.48 E-value=76 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=15.9
Q ss_pred cEEEEEEeCCCChhhhhhhHHHH
Q 044943 21 RLVILYFTATWCGPCRFISPLFT 43 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~~ 43 (107)
+..-|.+..+-|+.|++++.++.
T Consensus 118 ~i~~I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 118 AIADITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred ceEEEEEEecCchhhHHHHHHhC
Confidence 34444445678999999976663
No 433
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=29.36 E-value=66 Score=15.19 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCChhhhhhhHH--HHHHHhh
Q 044943 20 LRLVILYFTATWCGPCRFISPL--FTNLASK 48 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~--~~~~~~~ 48 (107)
+...++.+....|.-|....|. +.++...
T Consensus 13 ~g~~va~v~~~~C~gC~~~l~~~~~~~i~~~ 43 (56)
T PF02591_consen 13 GGVAVARVEGGTCSGCHMELPPQELNEIRKG 43 (56)
T ss_pred CCcEEEEeeCCccCCCCEEcCHHHHHHHHcC
Confidence 7788899999999999977653 4555433
No 434
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=29.30 E-value=96 Score=18.70 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=18.8
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
+.+.+++++++. +.+.++|.+|.+..+
T Consensus 130 v~~~~~l~~al~-a~~~~~p~li~v~~~ 156 (181)
T TIGR03846 130 VADEEELRDALK-ALAMKGPTFIHVKVK 156 (181)
T ss_pred eCCHHHHHHHHH-HHcCCCCEEEEEEeC
Confidence 456777777776 666677777777654
No 435
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=29.29 E-value=61 Score=15.95 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=11.8
Q ss_pred ccceEEEEeCCeEEE
Q 044943 73 SVPTFFFIKNGKEVD 87 (107)
Q Consensus 73 ~~P~~~~~~~g~~~~ 87 (107)
-.|++.++++|+.+.
T Consensus 11 P~P~v~W~kdg~~l~ 25 (67)
T cd05863 11 PPPEFQWYKDGKLIS 25 (67)
T ss_pred CCCEEEEEECCEECc
Confidence 467888889998775
No 436
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.28 E-value=31 Score=21.25 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=25.4
Q ss_pred CCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCchhHHhhcccCccceE
Q 044943 29 ATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTF 77 (107)
Q Consensus 29 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~ 77 (107)
.+.||+|.+.+=.+.-. .-.+....++.|+...-.+..|-..+|.+
T Consensus 6 YdHCPfcvrarmi~Gl~---nipve~~vL~nDDe~Tp~rmiG~KqVPiL 51 (215)
T COG2999 6 YDHCPFCVRARMIFGLK---NIPVELHVLLNDDEETPIRMIGQKQVPIL 51 (215)
T ss_pred eccChHHHHHHHHhhcc---CCChhhheeccCcccChhhhhcccccceE
Confidence 47899999876443210 00233444444444444555677777755
No 437
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=29.26 E-value=81 Score=15.51 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=18.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHhhCCCeE
Q 044943 25 LYFTATWCGPCRFISPLFTNLASKYTKVV 53 (107)
Q Consensus 25 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~ 53 (107)
+.+..++|+....+...+.+.....+++.
T Consensus 40 l~l~~~~~~~~~~l~~~i~~~l~~l~gv~ 68 (72)
T PF01883_consen 40 LELPTPACPAAEPLREEIREALKALPGVK 68 (72)
T ss_dssp E--SSTTHTTHHHHHHHHHHHHHTSTT-S
T ss_pred EEECCCCchHHHHHHHHHHHHHHhCCCCc
Confidence 33345788877777777777666666643
No 438
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=29.22 E-value=70 Score=20.22 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCC
Q 044943 5 SASEFETKLNAATRALRLVILYFTATW 31 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~ 31 (107)
+.......+..+.+.++++++..|+|.
T Consensus 154 s~~~~~~~~~~A~~~~~~~v~~~w~p~ 180 (257)
T PF04069_consen 154 SEAAMDAALYAAYKRGEPIVFYAWSPD 180 (257)
T ss_dssp EHHHHHHHHHHHHHTTSSSEEEEETSS
T ss_pred ccchhHHHHHHHHHcCCCEEEEEecCC
Confidence 445566678888899999999999985
No 439
>PLN02182 cytidine deaminase
Probab=28.81 E-value=1.2e+02 Score=20.71 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=11.3
Q ss_pred CCCChhhhhhhHHH
Q 044943 29 ATWCGPCRFISPLF 42 (107)
Q Consensus 29 ~~~C~~C~~~~~~~ 42 (107)
.+-|+.|++++.++
T Consensus 129 ~sPCG~CRQfm~Ef 142 (339)
T PLN02182 129 GTPCGHCLQFLMEM 142 (339)
T ss_pred cCCCchhHHHHHHh
Confidence 56799999996666
No 440
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=28.64 E-value=1.3e+02 Score=19.75 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=23.5
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 4 HSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
.+.+++..++.++...+.+.+|.+..+
T Consensus 176 ~~~~el~~al~~Al~~~Gp~lIev~~~ 202 (286)
T PRK11867 176 SDVKQLTELIKAAINHKGFSFVEILQP 202 (286)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 467889999999998889999999866
No 441
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=28.54 E-value=90 Score=15.79 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=17.2
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTA 29 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~ 29 (107)
..+...++..+.+..+.++.+++...+
T Consensus 17 A~~l~~LEkkIneqIe~NkailL~V~s 43 (68)
T PF10750_consen 17 ANDLQTLEKKINEQIEHNKAILLEVHS 43 (68)
T ss_pred cchHHHHHHHHHHHHhcCceEEEEEEE
Confidence 345566677777766777777666543
No 442
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.52 E-value=37 Score=21.13 Aligned_cols=52 Identities=8% Similarity=-0.018 Sum_probs=29.5
Q ss_pred HHHHHHHhCCcEEEEEEe---CCCChhhhhhhHHHHHHHhhCCCeEEEEEECcCc
Q 044943 11 TKLNAATRALRLVILYFT---ATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEA 62 (107)
Q Consensus 11 ~~~~~~~~~~k~~lv~f~---~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~ 62 (107)
..++.+.+.+.++.++.. .+.++........+..+..++|+++++-.-+...
T Consensus 121 ~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 121 PIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLERFPDLRIILAHLGGP 175 (273)
T ss_dssp HHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHSTTSEEEESGGGTT
T ss_pred HHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHHHhcCCeEEEecCccc
Confidence 566666667777777643 1111122223345677888899988886655433
No 443
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=28.48 E-value=1.3e+02 Score=19.90 Aligned_cols=33 Identities=6% Similarity=0.101 Sum_probs=26.7
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhh
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATWCGPCRF 37 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~ 37 (107)
.+.+++.+.+.++.+.+.+.+|.+..+ |+...+
T Consensus 160 ~~~~eL~~ai~~Al~~~GpslIeV~~p-C~t~n~ 192 (287)
T TIGR02177 160 GDVAHLKEIIKEAINHKGYALVDILQP-CVTYNK 192 (287)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEeCC-CCCCCc
Confidence 466889999999998899999999866 666544
No 444
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.45 E-value=26 Score=22.95 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=7.3
Q ss_pred CCCChhhhh
Q 044943 29 ATWCGPCRF 37 (107)
Q Consensus 29 ~~~C~~C~~ 37 (107)
.+.||+|+.
T Consensus 270 kqtCPYCKe 278 (328)
T KOG1734|consen 270 KQTCPYCKE 278 (328)
T ss_pred CCCCchHHH
Confidence 578999985
No 445
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=28.35 E-value=60 Score=22.78 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=13.7
Q ss_pred CCCChhhhhhhHHHHHH
Q 044943 29 ATWCGPCRFISPLFTNL 45 (107)
Q Consensus 29 ~~~C~~C~~~~~~~~~~ 45 (107)
++.||.|+++...+-++
T Consensus 451 ~pacpscQrlhkkilel 467 (558)
T PF15358_consen 451 PPACPSCQRLHKKILEL 467 (558)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 48999999999876544
No 446
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=28.15 E-value=87 Score=19.45 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=20.0
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCCh
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCG 33 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~ 33 (107)
+.++|.+.+.+..+.+..-|+.=|||.|-
T Consensus 26 ~ke~F~~kvne~~~~~~~~l~dGYAPFCK 54 (197)
T PF11539_consen 26 DKEEFVEKVNEIYKEGPAKLVDGYAPFCK 54 (197)
T ss_dssp -HHHHHHHHHHHHHCCT--EEE-SSTTEE
T ss_pred CHHHHHHHHHHHHhcCCCccccccCccee
Confidence 56778888888877777778888998874
No 447
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=28.10 E-value=53 Score=16.86 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=12.0
Q ss_pred ccceEEEEeCCeEEE
Q 044943 73 SVPTFFFIKNGKEVD 87 (107)
Q Consensus 73 ~~P~~~~~~~g~~~~ 87 (107)
-.|++-+|++|+.+.
T Consensus 11 P~Pti~W~kng~~l~ 25 (79)
T cd05855 11 PKPTLQWFHEGAILN 25 (79)
T ss_pred CCCceEEEECCEECC
Confidence 467999999998774
No 448
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=28.09 E-value=2.3e+02 Score=20.38 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCcEEEEEEeCC--CChhhhhhhHHHHHHHhhCCCeEEEEEECc
Q 044943 9 FETKLNAATRALRLVILYFTAT--WCGPCRFISPLFTNLASKYTKVVFLKVDID 60 (107)
Q Consensus 9 ~~~~~~~~~~~~k~~lv~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~ 60 (107)
-+..+.++.+.++|.++.+-+. .++.++.+ ..++.+.|. +.++.++|.
T Consensus 169 Ee~~i~eLk~~~kPfiivlN~~dp~~~et~~l---~~~l~eky~-vpvl~v~c~ 218 (492)
T TIGR02836 169 EERVIEELKELNKPFIILLNSTHPYHPETEAL---RQELEEKYD-VPVLAMDVE 218 (492)
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCchhHHH---HHHHHHHhC-CceEEEEHH
Confidence 4566777777889887776443 34444433 344555553 566677764
No 449
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=28.03 E-value=1e+02 Score=16.22 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=9.9
Q ss_pred ccChhhHHHHHHHHHhCCcE
Q 044943 3 IHSASEFETKLNAATRALRL 22 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~ 22 (107)
|++..++++.+.-+.++++.
T Consensus 54 lssd~eLeE~~rl~~~~~~~ 73 (81)
T cd06396 54 VNSQGEYEEALKSAVRQGNL 73 (81)
T ss_pred EEchhhHHHHHHHHHhCCCE
Confidence 44455555555555444443
No 450
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.92 E-value=81 Score=22.85 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=24.7
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
.+.+.++++..+.++...++|++|.+--+
T Consensus 503 ~v~~~~el~~al~~al~~~~p~lidv~id 531 (550)
T COG0028 503 RVETPEELEEALEEALASDGPVLIDVVVD 531 (550)
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 35688899999999999999999988665
No 451
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=27.85 E-value=13 Score=15.09 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=6.0
Q ss_pred eCCCChhhhh
Q 044943 28 TATWCGPCRF 37 (107)
Q Consensus 28 ~~~~C~~C~~ 37 (107)
.+.+|+.|+.
T Consensus 20 ~~~~C~rCq~ 29 (30)
T PF06827_consen 20 STYLCPRCQK 29 (30)
T ss_dssp EEEE-TTTCC
T ss_pred CCeECcCCcC
Confidence 3457888875
No 452
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=27.82 E-value=18 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=10.2
Q ss_pred eCCCChhhhhhhH
Q 044943 28 TATWCGPCRFISP 40 (107)
Q Consensus 28 ~~~~C~~C~~~~~ 40 (107)
-.+||-||.+...
T Consensus 9 ~kpwcwycnrefd 21 (341)
T KOG2893|consen 9 DKPWCWYCNREFD 21 (341)
T ss_pred CCceeeecccccc
Confidence 3689999997653
No 453
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=27.82 E-value=1.9e+02 Score=19.32 Aligned_cols=92 Identities=8% Similarity=0.091 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCChhhhhhhHH-HHHHHhhCCCeEEEE-----EECcCchhHHhhcccCccceEEEEeC-
Q 044943 10 ETKLNAATRALRLVILYFTATWCGPCRFISPL-FTNLASKYTKVVFLK-----VDIDEARDVATRWNIGSVPTFFFIKN- 82 (107)
Q Consensus 10 ~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~-~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~v~~~P~~~~~~~- 82 (107)
+....-+..+.++-+++..+|..|.-...+.. +.++.+. ++..++. +|.... -...--+..+|-+++.+.
T Consensus 149 dai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~-p~nglVVvDEAYidFsg~--~S~~~lV~kYpNLivlqTl 225 (375)
T KOG0633|consen 149 DAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEM-PDNGLVVVDEAYIDFSGV--ESRMKLVKKYPNLIVLQTL 225 (375)
T ss_pred HHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhC-CCCcEEEEeeeeEeeccc--cccchHhHhCCceeehhhh
Confidence 33334444456778888899999998888765 4555554 4333333 333321 112223567788777731
Q ss_pred ----Ce-EEEEEcCCCHHHHHHHHHHH
Q 044943 83 ----GK-EVDKVVGADKSALERKIAQH 104 (107)
Q Consensus 83 ----g~-~~~~~~g~~~~~l~~~i~~~ 104 (107)
|- -+....|..+..+.+.+.++
T Consensus 226 SKsfGLAGiRvG~~~~~~~ia~iln~~ 252 (375)
T KOG0633|consen 226 SKSFGLAGIRVGYGAFPLSIAEILNRA 252 (375)
T ss_pred hhhcCcceeEeecccccHHHHHHHHhc
Confidence 11 11112233556666666544
No 454
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=27.78 E-value=84 Score=20.76 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=15.5
Q ss_pred cEEEEEEeCCCChhhhhhhHHH
Q 044943 21 RLVILYFTATWCGPCRFISPLF 42 (107)
Q Consensus 21 k~~lv~f~~~~C~~C~~~~~~~ 42 (107)
+..-|....+-|+.|++++.++
T Consensus 90 ~i~~Iav~~~PCG~CRQ~l~Ef 111 (283)
T TIGR01355 90 GLNDLAVSYAPCGHCRQFLNEI 111 (283)
T ss_pred ceEEEEEEeCCcchhHHHHHHh
Confidence 3444445578999999996666
No 455
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=27.62 E-value=1.5e+02 Score=18.10 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=24.3
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCC--CeEEEEEECcCchhHHhhccc
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNI 71 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v 71 (107)
+.++-+|-++...-..-..+...++.+.+..+ ++.++.-..--..++++.+|.
T Consensus 131 ~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~~~~~~Ga 185 (201)
T cd02070 131 EHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQEFADEIGA 185 (201)
T ss_pred HcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHHHHHHcCC
Confidence 44555555554433334445555555555544 444443322222345555544
No 456
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=1.5e+02 Score=17.95 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=34.0
Q ss_pred EEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEECc---CchhHHhhcccCccceEEE
Q 044943 26 YFTATWCGPCRFISPLFTNLASKYTKVVFLKVDID---EARDVATRWNIGSVPTFFF 79 (107)
Q Consensus 26 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~v~~~P~~~~ 79 (107)
.++.+.+++|.+..-.+.+..- ...+..++.. ..+++........+|.++.
T Consensus 3 L~~~~~sp~~~kv~l~l~e~g~---~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~ 56 (211)
T COG0625 3 LYGSPTSPYSRKVRLALEEKGL---PYEIVLVDLDAEQKPPDFLALNPLGKVPALVD 56 (211)
T ss_pred eecCCCCcchHHHHHHHHHcCC---CceEEEeCcccccCCHHHHhcCCCCCCCEEee
Confidence 3556666889888877766542 3455556554 3466667777889999863
No 457
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=27.53 E-value=1.2e+02 Score=17.03 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=39.8
Q ss_pred hhhHHHHHHHhhCCCeEEEEEEC---cCchhHHhhcccCccceEEEEeCCeEEEEEcCC--CHHHHHHHHHHHhC
Q 044943 37 FISPLFTNLASKYTKVVFLKVDI---DEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA--DKSALERKIAQHAG 106 (107)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~i~~~~~ 106 (107)
.+...++++... +++.++.+.- +..++.-.+|. ...|+++...+.+ .|+ ..+.+.+.++.++|
T Consensus 47 ei~~~~~~~l~~-~digIIlIte~~a~~i~~~I~~~~-~~~PaIieIP~k~-----~~y~~~~d~i~~~~~~~~~ 114 (115)
T TIGR01101 47 EIEDCFNRFLKR-DDIAIILINQHIAEMIRHAVDAHT-RSIPAVLEIPSKD-----HPYDASKDSILRRARGMFN 114 (115)
T ss_pred HHHHHHHHHhhc-CCeEEEEEcHHHHHHhHHHHHhcC-CcCCEEEEECCCC-----CCCCCcccHHHHHHHHHcC
Confidence 344555553332 3566666653 34455666788 8999999996522 233 56778888877765
No 458
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=27.19 E-value=47 Score=18.68 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=10.9
Q ss_pred hcccCccceEEEE
Q 044943 68 RWNIGSVPTFFFI 80 (107)
Q Consensus 68 ~~~v~~~P~~~~~ 80 (107)
.+|+..+|.++|-
T Consensus 78 ~lgi~k~PAVVfD 90 (114)
T PF07511_consen 78 SLGITKYPAVVFD 90 (114)
T ss_pred HhCccccCEEEEc
Confidence 4699999999884
No 459
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=27.17 E-value=48 Score=18.64 Aligned_cols=13 Identities=8% Similarity=0.286 Sum_probs=10.8
Q ss_pred hcccCccceEEEE
Q 044943 68 RWNIGSVPTFFFI 80 (107)
Q Consensus 68 ~~~v~~~P~~~~~ 80 (107)
.+|+..+|.++|-
T Consensus 79 ~lGi~k~PAVV~D 91 (113)
T TIGR03757 79 QLGVTKIPAVVVD 91 (113)
T ss_pred HcCCccCCEEEEc
Confidence 4699999999884
No 460
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=27.07 E-value=1.2e+02 Score=16.62 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=35.7
Q ss_pred EeCCCChhhhhhhH-------HHHHHHhhCCCeEEEEEECcCchhHHhhcccC-ccceEEEEeCCeEEEEEcCCCHHHHH
Q 044943 27 FTATWCGPCRFISP-------LFTNLASKYTKVVFLKVDIDEARDVATRWNIG-SVPTFFFIKNGKEVDKVVGADKSALE 98 (107)
Q Consensus 27 f~~~~C~~C~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~-~~P~~~~~~~g~~~~~~~g~~~~~l~ 98 (107)
|....||.|..+.. ........+.++..+ +|. +...+++..++. .+|-.+. -...|.-++++.
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~dP-~~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~~i~ 88 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MDP-EKSWVARWQRIDKFVPGIYA-------ISVSGRLPEDIV 88 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEE-ECC-chhHHHHHhCCCCCCCCeEE-------EEecCcCCHHHH
Confidence 77889999963321 122234445454433 232 245567777775 2444433 345566555555
Q ss_pred HHHHH
Q 044943 99 RKIAQ 103 (107)
Q Consensus 99 ~~i~~ 103 (107)
+.++.
T Consensus 89 ~~l~~ 93 (98)
T cd07973 89 EELES 93 (98)
T ss_pred HHHHH
Confidence 55543
No 461
>PRK12411 cytidine deaminase; Provisional
Probab=26.83 E-value=36 Score=19.56 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.0
Q ss_pred CCChhhhhhhHHH
Q 044943 30 TWCGPCRFISPLF 42 (107)
Q Consensus 30 ~~C~~C~~~~~~~ 42 (107)
+-|+.|+++...+
T Consensus 84 sPCG~CRQ~l~Ef 96 (132)
T PRK12411 84 PPCGACRQVMVEL 96 (132)
T ss_pred CCchhHHHHHHHh
Confidence 4799999886555
No 462
>COG5254 ARV1 Predicted membrane protein [Function unknown]
Probab=26.39 E-value=38 Score=21.17 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.0
Q ss_pred CCChhhhhhhHHHHHH
Q 044943 30 TWCGPCRFISPLFTNL 45 (107)
Q Consensus 30 ~~C~~C~~~~~~~~~~ 45 (107)
+.||+|++.....-++
T Consensus 25 s~Cp~C~~~~DkY~El 40 (239)
T COG5254 25 SRCPSCNRKMDKYFEL 40 (239)
T ss_pred hcCchHHHHHHHHhhh
Confidence 4799999988665443
No 463
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=26.29 E-value=1.7e+02 Score=18.14 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=45.2
Q ss_pred CCcEEEEEEe-CCCChhhhhhhHHHHHHHhhCC--C--eEEEEEEC--------------------------cCchhHHh
Q 044943 19 ALRLVILYFT-ATWCGPCRFISPLFTNLASKYT--K--VVFLKVDI--------------------------DEARDVAT 67 (107)
Q Consensus 19 ~~k~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~--~--~~~~~i~~--------------------------~~~~~~~~ 67 (107)
.+|++++.|| .++--.|-...-.+...+.++. + +..+.+|. |...++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 5789999887 4454555433333433333332 2 33333331 34567889
Q ss_pred hcccC----ccce--EEEE-eCCeEEE---E--EcCCCHHHHHHHHHHH
Q 044943 68 RWNIG----SVPT--FFFI-KNGKEVD---K--VVGADKSALERKIAQH 104 (107)
Q Consensus 68 ~~~v~----~~P~--~~~~-~~g~~~~---~--~~g~~~~~l~~~i~~~ 104 (107)
.||+- |.+. ++++ .+|.... + -.|.+-++....+.+.
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 99873 5552 2222 4554433 2 2344667766666543
No 464
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=26.28 E-value=1.6e+02 Score=20.30 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHhCCcEEEEE---EeCCCChhhhhhhHHHHHHHhhCC-CeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEEc
Q 044943 15 AATRALRLVILY---FTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVV 90 (107)
Q Consensus 15 ~~~~~~k~~lv~---f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 90 (107)
.+...+..++++ |++=.=--=..|...+-++.+.+. .+.|+.-|.++.-.+.. .+.++++|+++....
T Consensus 177 RAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~--------rIaimkdG~ivQ~Gt 248 (386)
T COG4175 177 RALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGD--------RIAIMKDGEIVQVGT 248 (386)
T ss_pred HHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccc--------eEEEecCCeEEEeCC
Confidence 334445555554 222221222344455666666665 49999888887666554 466778998887654
Q ss_pred C
Q 044943 91 G 91 (107)
Q Consensus 91 g 91 (107)
+
T Consensus 249 p 249 (386)
T COG4175 249 P 249 (386)
T ss_pred H
Confidence 4
No 465
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=26.03 E-value=27 Score=21.54 Aligned_cols=18 Identities=28% Similarity=0.850 Sum_probs=13.0
Q ss_pred CcEEEEEEeCCCChhhhh
Q 044943 20 LRLVILYFTATWCGPCRF 37 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~ 37 (107)
.+.++=.||.-||..|.-
T Consensus 5 ~~~~~gk~~iyWCe~cNl 22 (202)
T COG5270 5 MPVVLGKFPIYWCEKCNL 22 (202)
T ss_pred cceeecccceeehhhCCC
Confidence 445566788889988864
No 466
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=25.90 E-value=1.7e+02 Score=18.05 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=25.8
Q ss_pred CCcEEEEEEeCCCChhhhhhhHHHHHHHhhCCC
Q 044943 19 ALRLVILYFTATWCGPCRFISPLFTNLASKYTK 51 (107)
Q Consensus 19 ~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~ 51 (107)
.=+|+.|+||.|.=....+....|+.+.....+
T Consensus 142 Gy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 142 GYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred CCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 458999999999887777777888877665543
No 467
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.81 E-value=1.7e+02 Score=19.20 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=21.0
Q ss_pred CcCchhHHhhcccCccceEEEEeCCeE
Q 044943 59 IDEARDVATRWNIGSVPTFFFIKNGKE 85 (107)
Q Consensus 59 ~~~~~~~~~~~~v~~~P~~~~~~~g~~ 85 (107)
++-.+++.+++++..+|..+.+.+...
T Consensus 11 ~dl~~~~~~~~~I~vlPL~V~~~g~~y 37 (282)
T COG1307 11 ADLPPELAEKLDITVLPLSVIIDGESY 37 (282)
T ss_pred CCCCHHHHHhCCeEEEeEEEEECCEEe
Confidence 456678888999999999988855433
No 468
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.32 E-value=1.7e+02 Score=22.35 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCeEEEEEECcCc
Q 044943 41 LFTNLASKYTKVVFLKVDIDEA 62 (107)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~~~ 62 (107)
.-+++.+.+|+..++.+|.|..
T Consensus 496 ieeeL~~~FP~~rv~r~d~Dtt 517 (730)
T COG1198 496 IEEELKRLFPGARIIRIDSDTT 517 (730)
T ss_pred HHHHHHHHCCCCcEEEEccccc
Confidence 3466778899999999998743
No 469
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=25.31 E-value=1.6e+02 Score=19.37 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=24.5
Q ss_pred cChhhHHHHHHHHHhCCcEEEEEEeCCCChh
Q 044943 4 HSASEFETKLNAATRALRLVILYFTATWCGP 34 (107)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~ 34 (107)
.+.+++.+.+.++.+.+.+.+|.+.++ |+.
T Consensus 166 ~~~~~l~~~l~~Al~~~Gps~I~v~~p-C~~ 195 (279)
T PRK11866 166 GDVKHLKEIIKEAIKHKGFSFIDVLSP-CVT 195 (279)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEeCC-CCC
Confidence 456788999999999889999999877 443
No 470
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=25.31 E-value=1.5e+02 Score=19.69 Aligned_cols=33 Identities=6% Similarity=0.102 Sum_probs=26.5
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhh
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTATWCGPCR 36 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~ 36 (107)
+.+.+++.+.+.++...+.+.+|.+..+ |+...
T Consensus 176 v~~~~eL~~ai~~A~~~~GpalIeV~~~-C~~~~ 208 (301)
T PRK05778 176 AGDVKQLVELIKKAISHKGFAFIDVLSP-CVTFN 208 (301)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEcCC-CCCCC
Confidence 4677889999999988889999998765 55554
No 471
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=25.24 E-value=2.3e+02 Score=19.31 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=43.7
Q ss_pred HHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhh-CCCeEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEE
Q 044943 11 TKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKV 89 (107)
Q Consensus 11 ~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 89 (107)
..+..+.+.+++.+|+|.+.--|- ...+...+.. +.-..|+... .......-.....|.+.+|++... ...
T Consensus 144 ~~fehlq~Rhq~ffVf~Gtge~PL----~d~fidAASe~~~~a~FfSas---eeVaPe~~~~kempaV~VFKDetf-~i~ 215 (468)
T KOG4277|consen 144 IEFEHLQARHQPFFVFFGTGEGPL----FDAFIDAASEKFSVARFFSAS---EEVAPEENDAKEMPAVAVFKDETF-EIE 215 (468)
T ss_pred HHHHHHhhccCceEEEEeCCCCcH----HHHHHHHhhhheeeeeeeccc---cccCCcccchhhccceEEEcccee-EEE
Confidence 344455578999999987654432 2222222222 2112222211 111122335567899999976432 222
Q ss_pred cCCCHHHHHHHHHH
Q 044943 90 VGADKSALERKIAQ 103 (107)
Q Consensus 90 ~g~~~~~l~~~i~~ 103 (107)
.....+.|.+||.+
T Consensus 216 de~dd~dLseWinR 229 (468)
T KOG4277|consen 216 DEGDDEDLSEWINR 229 (468)
T ss_pred ecCchhHHHHHHhH
Confidence 23356677777764
No 472
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=25.03 E-value=1.1e+02 Score=15.47 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=38.8
Q ss_pred EeCCCChhhhhhhHHHHHHHhhCCC-eEEEEEECcCchhHHhhcccCccceEEEEeCCeEEEEE---cCC-CHHHHHHHH
Q 044943 27 FTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKV---VGA-DKSALERKI 101 (107)
Q Consensus 27 f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~---~g~-~~~~l~~~i 101 (107)
-|=..|.+-.++...-+++...+|+ +.-+.... ...-++-++-+|+.+... .++ +++++.+.|
T Consensus 6 eYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~~~------------~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I 73 (76)
T PF10262_consen 6 EYCTSCGYRPRALELAQELLQTFPDRIAEVELSP------------GSTGAFEVTVNGELIFSKLESGRFPDPDEIVQLI 73 (76)
T ss_dssp EEETTTTCHHHHHHHHHHHHHHSTTTCSEEEEEE------------ESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcceEEEEEe------------ccCCEEEEEEccEEEEEehhcCCCCCHHHHHHHH
Confidence 3445566666777777888889987 22222211 122245566677766632 245 889999888
Q ss_pred HHH
Q 044943 102 AQH 104 (107)
Q Consensus 102 ~~~ 104 (107)
+++
T Consensus 74 ~~~ 76 (76)
T PF10262_consen 74 RDH 76 (76)
T ss_dssp HHH
T ss_pred hcC
Confidence 763
No 473
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=24.64 E-value=1.1e+02 Score=15.67 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=25.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHhhCCC---eEEEEE
Q 044943 24 ILYFTATWCGPCRFISPLFTNLASKYTK---VVFLKV 57 (107)
Q Consensus 24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~i 57 (107)
+++|..+.+.-.+-.....++..+.||+ +.+..+
T Consensus 5 FLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~L 41 (73)
T PF10407_consen 5 FLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSL 41 (73)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEe
Confidence 7788999988887777778888888885 444444
No 474
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=24.55 E-value=1.3e+02 Score=18.64 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=18.8
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEECc
Q 044943 31 WCGPCRFISPLFTNLASKYTKVVFLKVDID 60 (107)
Q Consensus 31 ~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~ 60 (107)
-|+.|+.+. .++++..|++.++.+|-.
T Consensus 156 PCGaC~ewL---~KIAe~np~f~v~mFd~t 182 (193)
T PF14421_consen 156 PCGACKEWL---RKIAEANPDFRVYMFDDT 182 (193)
T ss_pred cchHHHHHH---HHHHHhCCCeEEEEecCC
Confidence 488887665 455557778888877744
No 475
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=24.52 E-value=2.5e+02 Score=19.49 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=55.5
Q ss_pred CcEEEEEEeCCCChhhhhhhHHHHHHHhhC---CCeEEEEEECcCchhHH----hhcccC-ccceEEEEe--CCeEEE-E
Q 044943 20 LRLVILYFTATWCGPCRFISPLFTNLASKY---TKVVFLKVDIDEARDVA----TRWNIG-SVPTFFFIK--NGKEVD-K 88 (107)
Q Consensus 20 ~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~----~~~~v~-~~P~~~~~~--~g~~~~-~ 88 (107)
+..-+|.|-...-|.-..+...++++++.+ |++.++.||.+..|-+- +.|+|. .-|++=++. +-..+. .
T Consensus 268 ~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~d 347 (383)
T PF01216_consen 268 DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWMD 347 (383)
T ss_dssp SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC-
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCCceeEEeccccccchhc
Confidence 455677787788899999999999999875 46999999999887553 456664 459988883 333332 2
Q ss_pred EcC---C-CHHHHHHHHHHHhC
Q 044943 89 VVG---A-DKSALERKIAQHAG 106 (107)
Q Consensus 89 ~~g---~-~~~~l~~~i~~~~~ 106 (107)
... . +.++|..||+..++
T Consensus 348 m~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 348 MDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp STTTSS---HHHHHHHHHHHHC
T ss_pred cCCcccCCcHHHHHHHHHHHhc
Confidence 222 2 78899999998764
No 476
>PF14430 Imm1: Immunity protein Imm1
Probab=24.41 E-value=1.4e+02 Score=16.74 Aligned_cols=31 Identities=6% Similarity=-0.036 Sum_probs=24.0
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWC 32 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C 32 (107)
.+.+.+++++.+..+...+...++.++.+.-
T Consensus 14 ~v~t~~evd~~l~~l~~~~~~~~~~l~~~~~ 44 (127)
T PF14430_consen 14 EVATPAEVDELLDRLAGPGGPQVVELWIDGD 44 (127)
T ss_pred EeCCHHHHHHHHHHHhccCCCceEEEEeCCC
Confidence 4678889999999987777776777877654
No 477
>PRK02935 hypothetical protein; Provisional
Probab=24.25 E-value=20 Score=19.82 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=11.8
Q ss_pred CChhhhhhhHHHHHH
Q 044943 31 WCGPCRFISPLFTNL 45 (107)
Q Consensus 31 ~C~~C~~~~~~~~~~ 45 (107)
+||.|.+....+.+.
T Consensus 72 ~CP~C~K~TKmLGrv 86 (110)
T PRK02935 72 ICPSCEKPTKMLGRV 86 (110)
T ss_pred ECCCCCchhhhccce
Confidence 899999887776553
No 478
>PRK05578 cytidine deaminase; Validated
Probab=24.17 E-value=43 Score=19.20 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=10.0
Q ss_pred CCChhhhhhhHHH
Q 044943 30 TWCGPCRFISPLF 42 (107)
Q Consensus 30 ~~C~~C~~~~~~~ 42 (107)
+-|+.|+++...+
T Consensus 84 sPCG~CRQ~l~e~ 96 (131)
T PRK05578 84 SPCGRCRQVLAEF 96 (131)
T ss_pred CccHHHHHHHHHh
Confidence 5789998886665
No 479
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.07 E-value=2.2e+02 Score=18.68 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=28.5
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCC-----CeEEEEEECcCc
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYT-----KVVFLKVDIDEA 62 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~i~~~~~ 62 (107)
-.+.+|+..|+.-+.-.....-+.+..+ ++.+...|+|..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~ 140 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLS 140 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHH
Confidence 4778999999877766555555555443 589999998743
No 480
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=23.98 E-value=1.1e+02 Score=15.31 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=26.2
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHHHHHhhC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY 49 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~~~~~~~ 49 (107)
+..+.++..+.... ..+++++++++..-.-..-+++...+....-..
T Consensus 5 ~p~~~~D~~~i~~~-l~~g~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al 51 (73)
T PF04472_consen 5 EPKSFEDAREIVDA-LREGKIVIVNLENLDDEEAQRILDFLSGAVYAL 51 (73)
T ss_dssp E-SSGGGHHHHHHH-HHTT--EEEE-TTS-HHHHHHHHHHHHHHHHHT
T ss_pred eeCCHHHHHHHHHH-HHcCCEEEEECCCCCHHHHHHHHHHHhchheee
Confidence 35677788886655 467899999996554444455555555544444
No 481
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.97 E-value=55 Score=22.75 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=23.7
Q ss_pred eCCCC--hhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 28 TATWC--GPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 28 ~~~~C--~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
|+|.| |||..-...++.+.-.+.+...+.-|+
T Consensus 240 wspscflpycsvsegtintlignhnnmlhiyqdv 273 (802)
T KOG3679|consen 240 WSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQDV 273 (802)
T ss_pred CCcccccccccccccchhhhhcCCCceEEeeeeh
Confidence 67777 899998999999888776654444443
No 482
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=23.87 E-value=1.3e+02 Score=16.20 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHhhCCCeEEEEEECcC----chhHHhhcccCccceEEEEeCCeEEEEEcCCCHHHHHHHHHHHhC
Q 044943 36 RFISPLFTNLASKYTKVVFLKVDIDE----ARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 106 (107)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 106 (107)
..+...++++... +++.++.+.-+- ...+.+.+.-...|.++.+.+. ...+.+.+.+++..|
T Consensus 30 ee~~~~l~~l~~~-~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~IP~~--------~~~~~i~~~v~raIG 95 (100)
T PRK02228 30 EKLDEAVEEVLED-DDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGGG--------GGSGGLREKIKRAIG 95 (100)
T ss_pred HHHHHHHHHHhhC-CCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEECCC--------ccchHHHHHHHHHhC
Confidence 3455566666432 467777666542 2233444778899999998531 123668888888776
No 483
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=23.84 E-value=25 Score=16.09 Aligned_cols=7 Identities=29% Similarity=0.448 Sum_probs=3.8
Q ss_pred Chhhhhh
Q 044943 32 CGPCRFI 38 (107)
Q Consensus 32 C~~C~~~ 38 (107)
||+|..-
T Consensus 1 CP~C~~k 7 (43)
T PF03470_consen 1 CPFCPGK 7 (43)
T ss_pred CCCCCCC
Confidence 5666543
No 484
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=23.74 E-value=2.9e+02 Score=19.96 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=20.4
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
.+.+.++++.++..+.+.+++.+|..--+
T Consensus 521 ~V~~~~eL~~al~~a~~~~~p~lIev~id 549 (568)
T PRK07449 521 RPETWAELEEALADALPTPGLTVIEVKTN 549 (568)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 35667777777777777777777777543
No 485
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.66 E-value=1.4e+02 Score=20.97 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=29.4
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEE
Q 044943 23 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVD 58 (107)
Q Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~ 58 (107)
-+|.|++-.-+.-..+.|.++++.+.+|++.++.--
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt 85 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTT 85 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 467788888899999999999999999876666443
No 486
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.62 E-value=2.2e+02 Score=18.70 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=33.9
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCCCChhhh--hhhHHHHHHHhhC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTATWCGPCR--FISPLFTNLASKY 49 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~--~~~~~~~~~~~~~ 49 (107)
++.+.+.....+..+...+.|+++.+......++- .+.+.+..+++..
T Consensus 19 N~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~ 68 (276)
T cd00947 19 NINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA 68 (276)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC
Confidence 45677788889999999999999999766544443 3445556666554
No 487
>PRK06848 hypothetical protein; Validated
Probab=23.60 E-value=45 Score=19.37 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=9.5
Q ss_pred CCChhhhhhhHHH
Q 044943 30 TWCGPCRFISPLF 42 (107)
Q Consensus 30 ~~C~~C~~~~~~~ 42 (107)
+-|+.|+++...+
T Consensus 95 ~PCG~CRQvl~E~ 107 (139)
T PRK06848 95 SPCGACRELISDY 107 (139)
T ss_pred CCChhhHHHHHHh
Confidence 4689999886554
No 488
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.46 E-value=1.1e+02 Score=22.44 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=23.7
Q ss_pred cccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 2 GIHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 2 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
.+.+.+++.+++..+.+.++++||...-+
T Consensus 531 ~V~~~~el~~al~~a~~~~~p~lIeV~i~ 559 (616)
T PRK07418 531 VISERDQLKDAIAEALAHDGPVLIDVHVR 559 (616)
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 36778899999999888888999988654
No 489
>PLN02470 acetolactate synthase
Probab=23.14 E-value=1.1e+02 Score=22.19 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=17.7
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
+.+.+++.++++.+.+.+++.+|.+.-+
T Consensus 530 v~~~~el~~al~~a~~~~~p~lieV~i~ 557 (585)
T PLN02470 530 VTRKSDLREAIQKMLDTPGPYLLDVIVP 557 (585)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4556666666666666666666666544
No 490
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=23.14 E-value=90 Score=16.16 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=10.4
Q ss_pred hHHhhcccCccceEEEEe
Q 044943 64 DVATRWNIGSVPTFFFIK 81 (107)
Q Consensus 64 ~~~~~~~v~~~P~~~~~~ 81 (107)
.+.+.|+..|+|-.+.++
T Consensus 63 ~lRe~f~f~G~Pi~l~~R 80 (80)
T PF14714_consen 63 QLREAFGFEGVPIRLIFR 80 (80)
T ss_dssp HHHHHH--TTS--EEEEE
T ss_pred HHHHHCCCCceeEEEEeC
Confidence 567778999999887763
No 491
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=23.09 E-value=1.5e+02 Score=18.31 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=7.5
Q ss_pred hCCcEEEEEEeCCCC
Q 044943 18 RALRLVILYFTATWC 32 (107)
Q Consensus 18 ~~~k~~lv~f~~~~C 32 (107)
+.++|+++.|.+-|-
T Consensus 130 ~~~~P~LllFGTGwG 144 (185)
T PF09936_consen 130 EEDRPVLLLFGTGWG 144 (185)
T ss_dssp H--S-EEEEE--TT-
T ss_pred ccCCeEEEEecCCCC
Confidence 568888888988873
No 492
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=23.04 E-value=39 Score=19.11 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=10.3
Q ss_pred CCCChhhhhhhHHH
Q 044943 29 ATWCGPCRFISPLF 42 (107)
Q Consensus 29 ~~~C~~C~~~~~~~ 42 (107)
.+-|+.|..+.+.+
T Consensus 110 ~~pC~nC~~~l~~~ 123 (125)
T PF14431_consen 110 APPCRNCAALLKHF 123 (125)
T ss_pred CCCCchHHHHHhhc
Confidence 45799998887653
No 493
>PRK05858 hypothetical protein; Provisional
Probab=22.91 E-value=1.4e+02 Score=21.45 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=22.3
Q ss_pred ccChhhHHHHHHHHHhCCcEEEEEEeCC
Q 044943 3 IHSASEFETKLNAATRALRLVILYFTAT 30 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 30 (107)
+.+.+++.+++.++.+.++|++|...-+
T Consensus 503 v~~~~eL~~al~~a~~~~~p~lIev~~~ 530 (542)
T PRK05858 503 VTVPAELGPALERAFASGVPYLVNVLTD 530 (542)
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 5678888888888888888888887653
No 494
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=22.73 E-value=59 Score=22.07 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.6
Q ss_pred CCCChhhhhhhHHHHHHHhhCC
Q 044943 29 ATWCGPCRFISPLFTNLASKYT 50 (107)
Q Consensus 29 ~~~C~~C~~~~~~~~~~~~~~~ 50 (107)
..+||.|...+..+++++..+.
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN 115 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALN 115 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999998887653
No 495
>PRK11579 putative oxidoreductase; Provisional
Probab=22.67 E-value=2.4e+02 Score=18.76 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHhCCcEEEEEEeCCCChhhhhhhHHHH
Q 044943 5 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFT 43 (107)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~lv~f~~~~C~~C~~~~~~~~ 43 (107)
+.++.++.+..+.+.+..+.+.|...+-|.-+.++..++
T Consensus 100 t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~ 138 (346)
T PRK11579 100 TLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLA 138 (346)
T ss_pred CHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHh
Confidence 455666666666666777777776666666666655543
No 496
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=22.67 E-value=1e+02 Score=14.35 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=20.5
Q ss_pred EEEEeCCeEEEEEcCC---CHHHHHHHHHHHhC
Q 044943 77 FFFIKNGKEVDKVVGA---DKSALERKIAQHAG 106 (107)
Q Consensus 77 ~~~~~~g~~~~~~~g~---~~~~l~~~i~~~~~ 106 (107)
+.+..+|++-....|. +=.++.+.|++.+|
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 3445789988887776 33567777777665
No 497
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=22.66 E-value=88 Score=15.84 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=15.6
Q ss_pred ccChhhHHHHHHHHHhCCcEEEE
Q 044943 3 IHSASEFETKLNAATRALRLVIL 25 (107)
Q Consensus 3 i~~~~~~~~~~~~~~~~~k~~lv 25 (107)
..|.+++.+++..+ ..+|+.+-
T Consensus 2 ~~s~eqv~~aFr~l-A~~KpyVT 23 (69)
T PF08726_consen 2 QDSAEQVEEAFRAL-AGGKPYVT 23 (69)
T ss_dssp SSTCHHHHHHHHHH-CTSSSCEE
T ss_pred CCCHHHHHHHHHHH-HcCCCccc
Confidence 46777888888876 66776653
No 498
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=22.52 E-value=1.4e+02 Score=15.82 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=26.5
Q ss_pred EEEEEEeCCCChhhhhhhHHHHHHHhhCCCeEEEEEEC
Q 044943 22 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDI 59 (107)
Q Consensus 22 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~ 59 (107)
.+.+.+..++|+....+...+.+.....+++.-+.+++
T Consensus 40 ~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i 77 (99)
T TIGR02945 40 DIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVEL 77 (99)
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 44566667889988888888877666666655555544
No 499
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=22.41 E-value=2.3e+02 Score=18.35 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred EEEEEECc-CchhHHhhcccCccceEEEE---eCCeEEEEEcCC-CHHHHHHHHH
Q 044943 53 VFLKVDID-EARDVATRWNIGSVPTFFFI---KNGKEVDKVVGA-DKSALERKIA 102 (107)
Q Consensus 53 ~~~~i~~~-~~~~~~~~~~v~~~P~~~~~---~~g~~~~~~~g~-~~~~l~~~i~ 102 (107)
.++-++-+ -...+.+.+++...-+-++| .+|++.....|. +++++..+.+
T Consensus 193 ~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 193 RYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred eEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
No 500
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=22.28 E-value=86 Score=16.34 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=0.0
Q ss_pred EEEECcCchhHHhhccc----CccceEE
Q 044943 55 LKVDIDEARDVATRWNI----GSVPTFF 78 (107)
Q Consensus 55 ~~i~~~~~~~~~~~~~v----~~~P~~~ 78 (107)
+.|.|..++++|-++.- .++|.++
T Consensus 29 lsIPCksdpdlcmQLDgWDe~TSiPA~l 56 (80)
T PF07351_consen 29 LSIPCKSDPDLCMQLDGWDEHTSIPAIL 56 (80)
T ss_pred EEeecCCChhheeEecccccCCccceEE
Done!