BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044944
         (759 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FXQ|A Chain A, Crystal Structure Of The Lysr-Type Transcriptional
           Regulator Tsar
 pdb|3FXQ|B Chain B, Crystal Structure Of The Lysr-Type Transcriptional
           Regulator Tsar
 pdb|3FXR|A Chain A, Crystal Structure Of Tsar In Complex With Sulfate
 pdb|3FXR|B Chain B, Crystal Structure Of Tsar In Complex With Sulfate
 pdb|3FXU|A Chain A, Crystal Structure Of Tsar In Complex With Its Effector P-
           Toluenesulfonate
 pdb|3FXU|B Chain B, Crystal Structure Of Tsar In Complex With Its Effector P-
           Toluenesulfonate
 pdb|3FZJ|A Chain A, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|B Chain B, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|C Chain C, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|D Chain D, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|E Chain E, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|F Chain F, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|G Chain G, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|H Chain H, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|I Chain I, Tsar Low Resolution Crystal Structure, Tetragonal Form
 pdb|3FZJ|J Chain J, Tsar Low Resolution Crystal Structure, Tetragonal Form
          Length = 305

 Score = 30.0 bits (66), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 428 KQNNLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQL-IELKG----------SV 476
           K   L+ L+CI +  ++     LL  S P     ++A + QL  ELK           S+
Sbjct: 3   KLQTLQALICIEEVGSLRAAAQLLHLSQPA----LSAAIQQLEDELKAPLLVRTKRGVSL 58

Query: 477 TAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGNIV 513
           T+F + + +H + +V  S        QL   + G+I 
Sbjct: 59  TSFGQAFMKHARLIVTESRRAQEEIGQLRGRWEGHIT 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,007,104
Number of Sequences: 62578
Number of extensions: 760264
Number of successful extensions: 1939
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1938
Number of HSP's gapped (non-prelim): 2
length of query: 759
length of database: 14,973,337
effective HSP length: 106
effective length of query: 653
effective length of database: 8,340,069
effective search space: 5446065057
effective search space used: 5446065057
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)