Query 044944
Match_columns 759
No_of_seqs 304 out of 2045
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 9E-155 2E-159 1371.2 81.8 740 1-746 26-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 1E-129 2E-134 1139.1 55.7 743 1-746 6-766 (769)
3 PRK03562 glutathione-regulated 100.0 1.1E-47 2.4E-52 445.4 44.9 372 17-412 5-381 (621)
4 PRK03659 glutathione-regulated 100.0 3.9E-47 8.5E-52 440.3 44.3 371 18-412 6-378 (601)
5 PRK10669 putative cation:proto 100.0 5.3E-47 1.1E-51 438.5 44.6 374 18-411 7-389 (558)
6 COG0475 KefB Kef-type K+ trans 100.0 4.1E-45 8.8E-50 402.3 42.7 379 16-411 5-385 (397)
7 PRK05326 potassium/proton anti 100.0 1E-39 2.2E-44 377.5 35.6 382 14-411 3-388 (562)
8 TIGR00932 2a37 transporter, mo 100.0 4.4E-36 9.6E-41 317.2 31.5 271 27-315 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 7.9E-40 1.7E-44 362.8 -4.2 371 24-410 3-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 1.6E-32 3.6E-37 273.2 29.6 378 12-410 2-387 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.8E-26 3.8E-31 264.0 39.0 354 20-382 16-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 7.4E-26 1.6E-30 258.6 36.4 367 23-410 4-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 1.3E-22 2.8E-27 225.7 38.6 381 17-410 6-406 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 4.5E-23 9.7E-28 215.7 27.4 370 13-401 3-376 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 6.8E-21 1.5E-25 217.6 36.7 365 34-411 27-417 (559)
16 PRK14853 nhaA pH-dependent sod 99.8 1.3E-15 2.9E-20 165.2 32.2 294 74-404 62-388 (423)
17 KOG4505 Na+/H+ antiporter [Ino 99.7 1E-14 2.2E-19 148.4 24.7 347 21-378 18-382 (467)
18 KOG1965 Sodium/hydrogen exchan 99.6 5.6E-14 1.2E-18 154.9 21.6 384 19-411 37-455 (575)
19 PRK11175 universal stress prot 99.6 1.6E-13 3.4E-18 147.7 21.1 273 433-744 5-300 (305)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 6.9E-12 1.5E-16 133.8 25.6 271 74-379 52-344 (373)
21 cd01988 Na_H_Antiporter_C The 99.2 3.1E-10 6.7E-15 105.7 12.6 131 433-581 1-131 (132)
22 PRK09560 nhaA pH-dependent sod 99.1 1.8E-08 3.9E-13 108.0 25.5 271 74-379 59-353 (389)
23 PRK09561 nhaA pH-dependent sod 99.1 2.6E-08 5.6E-13 106.5 24.9 271 74-379 59-351 (388)
24 PRK14856 nhaA pH-dependent sod 99.1 2.9E-08 6.2E-13 108.0 25.2 295 73-405 67-425 (438)
25 PRK14854 nhaA pH-dependent sod 99.1 9E-08 1.9E-12 102.1 26.8 289 74-397 56-366 (383)
26 PRK14855 nhaA pH-dependent sod 99.0 8.8E-08 1.9E-12 103.8 24.6 290 74-404 63-407 (423)
27 COG3004 NhaA Na+/H+ antiporter 98.9 7.1E-07 1.5E-11 91.7 24.0 263 83-380 71-355 (390)
28 PF06965 Na_H_antiport_1: Na+/ 98.8 2.2E-08 4.8E-13 107.1 12.3 289 73-396 54-368 (378)
29 KOG1966 Sodium/hydrogen exchan 98.8 7.3E-09 1.6E-13 114.3 5.8 370 31-411 56-449 (670)
30 cd01989 STK_N The N-terminal d 98.5 1E-06 2.2E-11 83.7 11.9 139 433-585 1-146 (146)
31 cd01987 USP_OKCHK USP domain i 98.4 1.3E-06 2.9E-11 80.4 10.6 122 433-581 1-123 (124)
32 cd01988 Na_H_Antiporter_C The 98.4 3.5E-06 7.7E-11 78.2 13.1 129 601-743 1-132 (132)
33 PRK15005 universal stress prot 98.4 4.3E-06 9.2E-11 79.2 12.2 137 433-581 4-143 (144)
34 cd01989 STK_N The N-terminal d 98.3 4.8E-06 1E-10 79.1 12.1 131 601-744 1-145 (146)
35 PF00582 Usp: Universal stress 98.3 8.5E-07 1.8E-11 82.3 6.6 133 433-581 4-139 (140)
36 PRK15456 universal stress prot 98.3 3.3E-06 7.2E-11 79.9 10.7 135 433-581 4-141 (142)
37 PRK15005 universal stress prot 98.3 1E-05 2.2E-10 76.6 11.9 131 600-743 3-144 (144)
38 PRK09982 universal stress prot 98.2 8.3E-06 1.8E-10 77.3 10.8 131 433-581 5-137 (142)
39 PRK15118 universal stress glob 98.2 1.2E-05 2.7E-10 76.1 10.5 133 433-581 5-137 (144)
40 PRK09982 universal stress prot 98.1 1.1E-05 2.3E-10 76.5 9.5 102 600-703 4-112 (142)
41 PRK15456 universal stress prot 98.1 1.9E-05 4.2E-10 74.7 11.0 129 600-743 3-142 (142)
42 PF00582 Usp: Universal stress 98.1 1.7E-05 3.7E-10 73.5 9.9 129 600-742 3-139 (140)
43 PRK15118 universal stress glob 98.1 2.1E-05 4.6E-10 74.5 9.9 130 599-747 3-142 (144)
44 cd00293 USP_Like Usp: Universa 98.0 3.9E-05 8.4E-10 70.2 10.3 129 433-580 1-129 (130)
45 cd00293 USP_Like Usp: Universa 98.0 6.6E-05 1.4E-09 68.7 11.7 128 601-742 1-130 (130)
46 PF05684 DUF819: Protein of un 98.0 0.025 5.5E-07 62.3 33.6 309 40-388 24-355 (378)
47 PRK11175 universal stress prot 98.0 3.5E-05 7.7E-10 82.8 11.1 144 432-586 153-303 (305)
48 cd01987 USP_OKCHK USP domain i 98.0 4.9E-05 1.1E-09 69.9 10.4 122 601-742 1-123 (124)
49 PRK10116 universal stress prot 98.0 3.7E-05 8E-10 72.6 9.7 128 600-743 4-138 (142)
50 PRK10116 universal stress prot 97.9 9.7E-05 2.1E-09 69.7 11.0 133 433-581 5-137 (142)
51 PRK12460 2-keto-3-deoxyglucona 97.8 0.0032 7E-08 66.2 21.5 253 83-412 51-306 (312)
52 COG0786 GltS Na+/glutamate sym 97.8 0.0072 1.6E-07 65.0 23.9 157 220-376 170-360 (404)
53 TIGR00698 conserved hypothetic 97.7 0.035 7.6E-07 59.9 27.7 90 36-130 26-116 (335)
54 PRK12652 putative monovalent c 97.6 0.00052 1.1E-08 74.7 11.7 122 599-735 5-144 (357)
55 PF03812 KdgT: 2-keto-3-deoxyg 97.5 0.023 5E-07 59.6 21.6 254 83-410 51-310 (314)
56 PF03616 Glt_symporter: Sodium 97.4 0.1 2.2E-06 57.6 27.2 97 267-364 247-345 (368)
57 COG0589 UspA Universal stress 97.3 0.004 8.7E-08 58.8 13.0 138 432-581 6-150 (154)
58 COG0385 Predicted Na+-dependen 97.1 0.32 6.9E-06 51.8 25.8 152 73-236 34-190 (319)
59 PF03601 Cons_hypoth698: Conse 97.0 0.07 1.5E-06 57.1 20.4 141 37-195 22-166 (305)
60 TIGR00210 gltS sodium--glutama 97.0 0.3 6.5E-06 54.2 25.9 94 266-361 244-340 (398)
61 COG0798 ACR3 Arsenite efflux p 97.0 0.34 7.5E-06 51.5 24.7 179 42-237 18-202 (342)
62 PF03390 2HCT: 2-hydroxycarbox 97.0 0.32 6.9E-06 53.6 25.1 256 92-383 109-393 (414)
63 TIGR00793 kdgT 2-keto-3-deoxyg 96.9 0.059 1.3E-06 56.3 17.8 259 83-411 51-311 (314)
64 TIGR00832 acr3 arsenical-resis 96.9 0.46 1E-05 51.6 25.1 103 80-194 46-152 (328)
65 COG3493 CitS Na+/citrate sympo 96.3 0.72 1.6E-05 49.5 20.6 84 298-383 325-412 (438)
66 TIGR00932 2a37 transporter, mo 96.2 0.11 2.5E-06 54.7 15.2 133 254-391 3-137 (273)
67 PF13593 DUF4137: SBF-like CPA 96.2 2.3 5.1E-05 45.8 25.1 113 76-199 30-147 (313)
68 PRK03562 glutathione-regulated 96.2 0.11 2.5E-06 61.3 16.1 117 248-367 10-127 (621)
69 PRK05274 2-keto-3-deoxyglucona 96.1 0.33 7.3E-06 52.3 18.0 47 84-130 54-100 (326)
70 COG0589 UspA Universal stress 96.0 0.075 1.6E-06 50.0 11.5 134 599-745 5-153 (154)
71 PF03601 Cons_hypoth698: Conse 95.9 0.22 4.9E-06 53.2 15.3 113 264-377 23-136 (305)
72 PRK10669 putative cation:proto 95.8 0.23 5E-06 58.2 16.6 133 251-388 14-147 (558)
73 PF03956 DUF340: Membrane prot 95.8 0.14 3.1E-06 50.8 12.3 129 45-195 2-135 (191)
74 COG2855 Predicted membrane pro 95.7 0.093 2E-06 55.8 11.4 113 261-375 31-143 (334)
75 TIGR00841 bass bile acid trans 95.7 3.5 7.6E-05 43.8 24.7 107 76-196 7-118 (286)
76 COG0475 KefB Kef-type K+ trans 95.7 0.27 5.8E-06 54.9 15.8 154 248-405 11-167 (397)
77 TIGR00783 ccs citrate carrier 95.7 0.72 1.6E-05 49.8 18.1 272 92-383 40-326 (347)
78 PRK03659 glutathione-regulated 95.7 0.42 9.2E-06 56.4 18.0 109 29-153 225-333 (601)
79 PF06826 Asp-Al_Ex: Predicted 95.6 0.52 1.1E-05 45.8 15.4 115 37-164 19-136 (169)
80 COG2855 Predicted membrane pro 95.5 4.3 9.3E-05 43.5 24.4 102 37-153 33-134 (334)
81 PRK12652 putative monovalent c 95.4 0.17 3.7E-06 55.3 12.5 132 432-578 6-146 (357)
82 PF01758 SBF: Sodium Bile acid 95.3 0.8 1.7E-05 45.4 16.1 106 81-198 2-111 (187)
83 PRK05326 potassium/proton anti 95.1 0.38 8.2E-06 56.4 15.1 128 250-381 13-143 (562)
84 PRK03818 putative transporter; 95.0 0.62 1.3E-05 54.2 16.3 130 19-165 8-143 (552)
85 TIGR01625 YidE_YbjL_dupl AspT/ 94.4 0.3 6.6E-06 46.7 9.7 110 42-165 22-138 (154)
86 TIGR00698 conserved hypothetic 94.2 1.1 2.3E-05 48.7 14.6 110 265-375 29-140 (335)
87 COG3180 AbrB Putative ammonia 94.2 10 0.00022 41.1 31.4 299 18-379 7-318 (352)
88 TIGR03802 Asp_Ala_antiprt aspa 93.7 0.71 1.5E-05 53.9 13.0 114 38-165 412-531 (562)
89 PLN03159 cation/H(+) antiporte 93.4 1.9 4.1E-05 52.9 16.3 41 431-473 630-670 (832)
90 TIGR00844 c_cpa1 na(+)/h(+) an 92.8 2.1 4.6E-05 51.2 15.0 71 298-369 74-146 (810)
91 PRK04972 putative transporter; 92.5 0.95 2.1E-05 52.8 11.7 119 23-163 18-140 (558)
92 TIGR00831 a_cpa1 Na+/H+ antipo 92.4 1.4 3E-05 51.1 13.0 116 252-371 7-124 (525)
93 PF05145 AmoA: Putative ammoni 92.3 19 0.00041 38.9 25.6 125 249-380 158-286 (318)
94 TIGR03802 Asp_Ala_antiprt aspa 92.3 1.1 2.5E-05 52.2 11.9 81 37-130 31-114 (562)
95 TIGR03082 Gneg_AbrB_dup membra 92.0 5.9 0.00013 38.0 14.6 120 252-378 4-127 (156)
96 PRK10490 sensor protein KdpD; 91.9 0.86 1.9E-05 56.5 11.0 122 431-581 250-372 (895)
97 TIGR03136 malonate_biotin Na+- 91.7 3.1 6.8E-05 44.7 13.1 114 296-414 101-215 (399)
98 PF03977 OAD_beta: Na+-transpo 91.2 1.3 2.9E-05 46.9 9.7 111 298-413 67-177 (360)
99 TIGR03082 Gneg_AbrB_dup membra 90.6 6 0.00013 38.0 13.2 97 24-131 2-100 (156)
100 PRK04972 putative transporter; 90.5 2.8 6.1E-05 48.9 12.8 127 25-164 389-525 (558)
101 TIGR00946 2a69 he Auxin Efflux 90.4 6 0.00013 42.8 14.6 138 38-194 179-316 (321)
102 TIGR00808 malonate_madM malona 89.8 4.1 8.8E-05 40.1 10.9 110 19-132 18-134 (254)
103 PRK12460 2-keto-3-deoxyglucona 89.5 3 6.5E-05 44.3 10.7 76 44-129 169-244 (312)
104 PRK03818 putative transporter; 88.4 15 0.00034 42.8 16.7 105 44-162 403-514 (552)
105 TIGR00210 gltS sodium--glutama 88.4 14 0.00031 41.2 15.6 167 20-194 222-393 (398)
106 COG2985 Predicted permease [Ge 88.4 3.6 7.7E-05 45.9 10.6 145 28-193 15-174 (544)
107 TIGR00930 2a30 K-Cl cotranspor 88.1 81 0.0018 39.5 45.0 131 428-581 571-707 (953)
108 COG1346 LrgB Putative effector 87.9 32 0.0007 34.9 16.2 109 287-408 61-170 (230)
109 PRK04288 antiholin-like protei 85.3 38 0.00081 34.7 15.4 108 288-408 65-173 (232)
110 PF03616 Glt_symporter: Sodium 84.8 11 0.00024 41.6 12.4 109 20-132 224-335 (368)
111 PRK10490 sensor protein KdpD; 84.1 5.5 0.00012 49.5 10.7 120 600-742 251-372 (895)
112 PF02040 ArsB: Arsenical pump 83.9 81 0.0018 35.5 19.9 36 155-190 117-152 (423)
113 COG0025 NhaP NhaP-type Na+/H+ 83.3 7.7 0.00017 43.8 10.6 72 300-372 64-137 (429)
114 PF05145 AmoA: Putative ammoni 82.3 27 0.00058 37.8 13.9 101 19-130 154-256 (318)
115 PF00999 Na_H_Exchanger: Sodiu 82.3 0.43 9.4E-06 52.9 0.1 112 253-367 6-123 (380)
116 TIGR01109 Na_pump_decarbB sodi 81.9 6.9 0.00015 41.5 8.7 113 296-413 59-177 (354)
117 KOG0573 Asparagine synthase [A 80.9 11 0.00024 41.6 10.1 109 562-687 224-335 (520)
118 COG2985 Predicted permease [Ge 80.5 12 0.00026 42.0 10.2 106 43-161 397-507 (544)
119 PRK15475 oxaloacetate decarbox 80.0 3.8 8.2E-05 44.0 6.1 122 297-423 131-259 (433)
120 PRK15477 oxaloacetate decarbox 79.9 3.6 7.8E-05 44.2 5.9 122 297-423 131-259 (433)
121 PRK15476 oxaloacetate decarbox 79.9 3.6 7.8E-05 44.2 5.9 122 297-423 131-259 (433)
122 PRK12342 hypothetical protein; 78.8 6.3 0.00014 41.0 7.3 94 608-717 33-137 (254)
123 COG2431 Predicted membrane pro 78.6 44 0.00096 34.9 12.9 79 43-131 108-190 (297)
124 COG4651 RosB Kef-type K+ trans 78.4 7.9 0.00017 40.7 7.6 118 248-371 11-132 (408)
125 TIGR02432 lysidine_TilS_N tRNA 78.2 12 0.00025 36.9 8.9 37 601-637 1-37 (189)
126 COG0786 GltS Na+/glutamate sym 78.0 15 0.00033 40.1 10.0 112 17-132 222-336 (404)
127 PRK10711 hypothetical protein; 77.7 69 0.0015 32.8 14.1 80 324-408 88-168 (231)
128 PRK03359 putative electron tra 77.1 5.2 0.00011 41.7 6.1 84 609-706 35-124 (256)
129 PRK09903 putative transporter 77.0 47 0.001 35.7 13.8 110 39-166 171-281 (314)
130 PF03547 Mem_trans: Membrane t 74.8 17 0.00037 40.2 10.0 134 271-411 10-146 (385)
131 TIGR00659 conserved hypothetic 74.2 1.1E+02 0.0023 31.3 15.0 80 324-408 87-167 (226)
132 TIGR00783 ccs citrate carrier 74.1 37 0.0008 36.9 11.7 94 32-132 194-294 (347)
133 COG2205 KdpD Osmosensitive K+ 74.0 16 0.00034 43.8 9.4 119 431-576 248-366 (890)
134 PF01171 ATP_bind_3: PP-loop f 73.7 29 0.00064 34.0 10.3 93 601-705 1-107 (182)
135 PF03956 DUF340: Membrane prot 73.7 5.4 0.00012 39.7 5.0 76 327-408 58-136 (191)
136 PF03547 Mem_trans: Membrane t 68.5 1.9E+02 0.0041 31.8 22.4 87 268-355 244-336 (385)
137 PF01012 ETF: Electron transfe 67.9 17 0.00038 34.9 7.1 83 609-705 14-101 (164)
138 COG0679 Predicted permeases [G 67.6 1.8E+02 0.0039 31.2 30.0 136 267-408 167-305 (311)
139 KOG2310 DNA repair exonuclease 66.7 11 0.00023 42.7 5.8 83 528-613 42-132 (646)
140 PRK05253 sulfate adenylyltrans 65.0 19 0.00041 38.6 7.2 37 601-637 29-65 (301)
141 COG3263 NhaP-type Na+/H+ and K 64.9 65 0.0014 36.0 11.0 105 262-367 26-132 (574)
142 COG1346 LrgB Putative effector 64.8 1.7E+02 0.0037 29.9 18.8 127 26-169 15-146 (230)
143 COG2086 FixA Electron transfer 63.6 23 0.00049 37.0 7.2 106 609-730 36-149 (260)
144 COG4827 Predicted transporter 63.1 1.7E+02 0.0036 29.3 12.8 48 77-124 9-58 (239)
145 COG5505 Predicted integral mem 62.7 2.2E+02 0.0047 30.4 29.1 83 299-384 275-357 (384)
146 COG1883 OadB Na+-transporting 61.8 7.9 0.00017 40.2 3.4 112 298-414 82-193 (375)
147 cd01984 AANH_like Adenine nucl 61.3 9.3 0.0002 32.2 3.4 48 525-578 35-83 (86)
148 cd01992 PP-ATPase N-terminal d 60.1 52 0.0011 32.0 9.0 37 601-637 1-37 (185)
149 COG3329 Predicted permease [Ge 58.7 2.1E+02 0.0046 30.4 13.0 126 260-390 7-137 (372)
150 PF05684 DUF819: Protein of un 58.2 1.1E+02 0.0023 34.1 11.8 98 294-395 52-153 (378)
151 COG1646 Predicted phosphate-bi 58.1 31 0.00068 35.1 6.8 62 513-582 15-77 (240)
152 COG0679 Predicted permeases [G 57.5 1.7E+02 0.0036 31.5 13.0 105 269-375 11-117 (311)
153 COG2035 Predicted membrane pro 57.4 2.5E+02 0.0055 29.5 14.7 47 15-63 59-107 (276)
154 PF04172 LrgB: LrgB-like famil 56.2 2.3E+02 0.0051 28.7 13.5 80 324-408 77-157 (215)
155 cd01993 Alpha_ANH_like_II This 55.8 87 0.0019 30.3 9.8 38 601-638 1-40 (185)
156 COG2205 KdpD Osmosensitive K+ 53.6 73 0.0016 38.4 9.8 122 600-743 249-373 (890)
157 TIGR02039 CysD sulfate adenyly 53.4 36 0.00079 36.3 6.8 37 601-637 21-57 (294)
158 cd01713 PAPS_reductase This do 53.0 67 0.0014 30.3 8.3 35 601-636 1-35 (173)
159 TIGR01625 YidE_YbjL_dupl AspT/ 50.9 47 0.001 31.8 6.6 91 269-361 23-120 (154)
160 PF13593 DUF4137: SBF-like CPA 50.6 1.7E+02 0.0037 31.5 11.7 90 270-362 7-98 (313)
161 PF03652 UPF0081: Uncharacteri 50.3 47 0.001 31.0 6.3 61 524-587 37-98 (135)
162 COG3180 AbrB Putative ammonia 50.2 49 0.0011 35.9 7.2 106 14-130 181-289 (352)
163 TIGR03136 malonate_biotin Na+- 50.1 3.8E+02 0.0083 29.4 22.5 249 19-322 22-303 (399)
164 COG3748 Predicted membrane pro 49.9 1.4E+02 0.0031 31.8 10.1 41 299-339 226-266 (407)
165 PRK04125 murein hydrolase regu 49.8 2.3E+02 0.005 26.7 11.6 99 17-126 8-114 (141)
166 PF05982 DUF897: Domain of unk 49.0 1.3E+02 0.0028 32.5 10.0 104 44-161 183-288 (327)
167 TIGR00840 b_cpa1 sodium/hydrog 48.6 77 0.0017 37.1 9.2 73 299-372 69-150 (559)
168 cd01984 AANH_like Adenine nucl 48.2 20 0.00043 30.1 3.3 33 602-635 1-33 (86)
169 PRK01663 C4-dicarboxylate tran 47.9 3.6E+02 0.0079 30.5 14.1 36 95-130 66-101 (428)
170 PRK10660 tilS tRNA(Ile)-lysidi 46.4 1.2E+02 0.0026 34.3 10.1 58 600-666 16-74 (436)
171 PF02601 Exonuc_VII_L: Exonucl 46.1 36 0.00078 36.7 5.7 51 657-707 30-88 (319)
172 PF03812 KdgT: 2-keto-3-deoxyg 45.3 78 0.0017 33.8 7.7 73 46-128 176-248 (314)
173 PF06181 DUF989: Protein of un 45.0 4E+02 0.0088 28.2 13.1 41 299-339 229-269 (300)
174 PF04018 DUF368: Domain of unk 44.9 3.9E+02 0.0084 28.0 14.8 39 15-55 58-96 (257)
175 COG3969 Predicted phosphoadeno 43.9 54 0.0012 35.3 6.1 56 600-666 28-84 (407)
176 TIGR00793 kdgT 2-keto-3-deoxyg 41.5 1.5E+02 0.0032 31.6 8.9 74 46-129 176-249 (314)
177 KOG1650 Predicted K+/H+-antipo 40.8 3.5E+02 0.0075 33.2 13.3 66 80-154 313-378 (769)
178 COG3763 Uncharacterized protei 40.1 1.1E+02 0.0023 25.1 5.8 39 209-250 8-46 (71)
179 cd01118 ArsB_permease Anion pe 39.2 5.8E+02 0.013 28.4 21.3 31 31-63 10-40 (416)
180 PRK12563 sulfate adenylyltrans 39.0 57 0.0012 35.1 5.6 36 601-636 39-74 (312)
181 TIGR03869 F420-0_ABCperm propo 38.2 5.5E+02 0.012 27.8 14.7 56 34-89 47-104 (325)
182 COG0037 MesJ tRNA(Ile)-lysidin 37.3 2.2E+02 0.0047 30.1 10.0 56 600-666 22-77 (298)
183 COG1902 NemA NADH:flavin oxido 37.2 2.4E+02 0.0053 31.1 10.3 133 552-709 191-326 (363)
184 COG3199 Predicted inorganic po 37.0 1.4E+02 0.003 32.4 8.0 92 615-724 34-128 (355)
185 PF01889 DUF63: Membrane prote 36.8 5.3E+02 0.012 27.2 17.5 42 13-54 20-68 (273)
186 TIGR00946 2a69 he Auxin Efflux 36.5 5.6E+02 0.012 27.4 28.9 136 268-409 182-319 (321)
187 PF03649 UPF0014: Uncharacteri 36.2 4.2E+02 0.0091 27.6 11.4 26 140-166 128-153 (250)
188 PRK04288 antiholin-like protei 35.7 5.1E+02 0.011 26.6 18.3 50 82-131 72-121 (232)
189 PF04172 LrgB: LrgB-like famil 35.2 5E+02 0.011 26.4 15.9 87 88-189 62-149 (215)
190 PF03686 UPF0146: Uncharacteri 35.0 68 0.0015 29.5 4.7 37 514-550 71-107 (127)
191 PRK13523 NADPH dehydrogenase N 34.6 2E+02 0.0042 31.4 9.1 127 554-708 186-312 (337)
192 TIGR00400 mgtE Mg2+ transporte 34.1 2.7E+02 0.0059 31.6 10.5 36 93-128 345-380 (449)
193 COG1597 LCB5 Sphingosine kinas 33.5 38 0.00082 36.3 3.3 67 655-726 22-89 (301)
194 KOG2718 Na+-bile acid cotransp 33.4 4.5E+02 0.0097 29.1 11.4 31 81-111 117-147 (371)
195 PRK00536 speE spermidine synth 31.8 1.5E+02 0.0032 31.2 7.2 10 693-702 138-147 (262)
196 PRK00109 Holliday junction res 31.4 88 0.0019 29.3 5.0 58 526-586 42-99 (138)
197 cd04734 OYE_like_3_FMN Old yel 31.1 2.8E+02 0.006 30.3 9.6 135 554-708 185-322 (343)
198 TIGR00841 bass bile acid trans 30.9 5E+02 0.011 27.4 11.3 104 303-410 14-120 (286)
199 TIGR00832 acr3 arsenical-resis 30.6 7.2E+02 0.016 26.9 14.1 66 310-377 56-127 (328)
200 PRK06806 fructose-bisphosphate 30.2 2.6E+02 0.0056 29.6 8.9 117 510-635 16-138 (281)
201 PRK09765 PTS system 2-O-a-mann 30.0 1E+03 0.022 28.4 18.4 27 210-236 417-443 (631)
202 PRK05274 2-keto-3-deoxyglucona 29.9 2.7E+02 0.0059 30.2 9.1 46 83-128 205-250 (326)
203 PRK01658 holin-like protein; V 29.5 4.5E+02 0.0097 24.1 11.8 100 16-126 4-111 (122)
204 COG1570 XseA Exonuclease VII, 29.2 96 0.0021 34.8 5.5 50 657-706 151-205 (440)
205 PRK04148 hypothetical protein; 29.0 81 0.0018 29.4 4.2 35 516-550 80-114 (134)
206 TIGR01109 Na_pump_decarbB sodi 28.0 8E+02 0.017 26.6 18.6 98 221-321 161-265 (354)
207 PF08659 KR: KR domain; Inter 27.8 4.6E+02 0.0099 25.3 9.8 85 605-704 4-91 (181)
208 cd06285 PBP1_LacI_like_7 Ligan 27.7 4.7E+02 0.01 26.5 10.4 107 492-633 12-120 (265)
209 PRK01821 hypothetical protein; 27.4 5.1E+02 0.011 24.1 11.4 98 17-125 10-115 (133)
210 PF06939 DUF1286: Protein of u 27.2 1.3E+02 0.0027 27.0 4.8 54 4-57 56-110 (114)
211 PF01507 PAPS_reduct: Phosphoa 26.9 1.3E+02 0.0028 28.6 5.6 32 601-636 1-32 (174)
212 PF03390 2HCT: 2-hydroxycarbox 26.1 9.7E+02 0.021 26.9 15.3 127 288-418 80-221 (414)
213 KOG2575 Glucosyltransferase - 25.5 9.8E+02 0.021 26.8 13.6 151 252-419 196-353 (510)
214 PF03977 OAD_beta: Na+-transpo 25.3 9.1E+02 0.02 26.3 25.7 248 21-321 4-265 (360)
215 PF03600 CitMHS: Citrate trans 25.2 8.8E+02 0.019 26.1 15.3 17 156-172 118-134 (351)
216 PF02844 GARS_N: Phosphoribosy 24.7 15 0.00033 32.4 -1.3 44 678-727 48-91 (100)
217 COG1055 ArsB Na+/H+ antiporter 24.6 1E+03 0.023 26.8 20.4 34 28-63 11-44 (424)
218 COG3371 Predicted membrane pro 24.4 4.3E+02 0.0093 26.0 8.3 62 38-108 73-134 (181)
219 COG0175 CysH 3'-phosphoadenosi 24.2 3.2E+02 0.007 28.5 8.2 30 602-635 42-71 (261)
220 KOG1965 Sodium/hydrogen exchan 24.0 3.2E+02 0.0069 31.9 8.5 72 299-372 102-181 (575)
221 PRK01844 hypothetical protein; 23.8 2.8E+02 0.006 22.9 5.8 35 212-249 11-45 (72)
222 TIGR00250 RNAse_H_YqgF RNAse H 23.6 1.6E+02 0.0035 27.2 5.3 60 524-586 34-93 (130)
223 cd01985 ETF The electron trans 22.8 4.5E+02 0.0098 25.4 8.7 26 609-635 18-43 (181)
224 PRK14853 nhaA pH-dependent sod 22.8 6.8E+02 0.015 28.2 10.7 28 290-317 58-85 (423)
225 COG0816 Predicted endonuclease 22.7 1.8E+02 0.004 27.4 5.4 57 526-585 41-97 (141)
226 PRK09560 nhaA pH-dependent sod 22.5 1.3E+02 0.0027 33.4 4.9 29 291-319 56-84 (389)
227 PF07905 PucR: Purine cataboli 22.1 3.7E+02 0.0079 24.4 7.3 85 461-549 22-110 (123)
228 PRK14854 nhaA pH-dependent sod 22.0 1.8E+02 0.0039 32.1 5.9 28 292-319 54-81 (383)
229 PF09930 DUF2162: Predicted tr 21.9 8.6E+02 0.019 24.8 14.5 36 90-127 20-55 (224)
230 PRK10577 iron-hydroxamate tran 21.9 1.3E+03 0.029 27.6 13.9 55 35-89 392-448 (668)
231 PF05977 MFS_3: Transmembrane 21.5 1.3E+03 0.028 26.8 17.1 13 270-282 357-369 (524)
232 cd04740 DHOD_1B_like Dihydroor 21.5 9.6E+02 0.021 25.2 13.6 170 528-728 105-291 (296)
233 PF07136 DUF1385: Protein of u 21.0 7.6E+02 0.016 25.4 9.8 26 86-111 119-144 (236)
234 PF01758 SBF: Sodium Bile acid 21.0 7.8E+02 0.017 24.0 12.3 70 307-376 8-81 (187)
235 COG0421 SpeE Spermidine syntha 20.9 2.6E+02 0.0057 29.6 6.8 47 653-705 107-160 (282)
236 PF09605 Trep_Strep: Hypotheti 20.8 8.1E+02 0.018 24.1 14.8 125 221-350 39-181 (186)
237 COG0385 Predicted Na+-dependen 20.8 1.1E+03 0.023 25.5 12.7 105 300-410 41-150 (319)
238 PRK14561 hypothetical protein; 20.7 1.6E+02 0.0035 29.2 4.9 22 601-622 2-23 (194)
239 PF10120 Aldolase_2: Putative 20.7 3.3E+02 0.0071 26.5 6.9 80 526-621 90-169 (170)
240 PRK10696 tRNA 2-thiocytidine b 20.6 4.4E+02 0.0095 27.4 8.4 37 600-636 30-68 (258)
241 PRK11281 hypothetical protein; 20.5 1.9E+03 0.041 28.3 16.9 26 291-317 620-646 (1113)
242 PRK14855 nhaA pH-dependent sod 20.5 1.5E+02 0.0032 33.3 4.9 29 291-319 60-88 (423)
243 PRK12737 gatY tagatose-bisphos 20.3 2.6E+02 0.0057 29.7 6.6 71 510-587 16-86 (284)
244 PF03672 UPF0154: Uncharacteri 20.1 3.6E+02 0.0078 21.8 5.6 35 212-249 4-38 (64)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=8.6e-155 Score=1371.21 Aligned_cols=740 Identities=37% Similarity=0.664 Sum_probs=676.4
Q ss_pred CCCCccc-cCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCC---CcCCCCchHHHH
Q 044944 1 HSYGIWH-HNPLQSTTPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTS---TLFPMRNRHILR 76 (759)
Q Consensus 1 ~s~g~~~-~~pl~~~l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~---~~fp~~~~~~l~ 76 (759)
+|+|+|+ +||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|.++. .+||.++.+.++
T Consensus 26 ~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~ 105 (832)
T PLN03159 26 TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLE 105 (832)
T ss_pred cCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHH
Confidence 5899999 999999999999999999999999999999999999999999999999999999865 678988888999
Q ss_pred HHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHH
Q 044944 77 TFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLV 156 (759)
Q Consensus 77 ~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 156 (759)
+++++|++++||++|+|+|++.+||++|+++.+|+.++++||++|++++++++.... .......++++|+++|.||+|
T Consensus 106 ~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~--~~~~~~~~l~~g~alS~Ts~p 183 (832)
T PLN03159 106 TMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSR--NVHQGTFILFLGVALSVTAFP 183 (832)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccchhHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999988887743211 112235678999999999999
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 157 VVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSK 236 (759)
Q Consensus 157 vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~ 236 (759)
+++++|+|+|+++++.||+++++++++|+++|++++++.++...+. +....++.++..++|++++.+++||++.|+.++
T Consensus 184 Vv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~-~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~ 262 (832)
T PLN03159 184 VLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDS-TSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRR 262 (832)
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998877654332 223456777777888888899999999999999
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccc
Q 044944 237 TAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEM 316 (759)
Q Consensus 237 ~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl 316 (759)
++++++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +|+++++.+|++++++++|+|+||+++|+++|+
T Consensus 263 ~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl 341 (832)
T PLN03159 263 TPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNV 341 (832)
T ss_pred CcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeH
Confidence 9988888999999999999999999999999999999999999998 678999999999999999999999999999999
Q ss_pred cccccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHH
Q 044944 317 YLLKES-STRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANM 395 (759)
Q Consensus 317 ~~l~~~-~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~ 395 (759)
..+.+. .|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.|+++++++
T Consensus 342 ~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~a 421 (832)
T PLN03159 342 TKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVA 421 (832)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHH
Confidence 887654 4655667778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccchhhcccccccCCCc-cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecC
Q 044944 396 VIVTSIASAVVGYLYDPSRRYKLDVRRAISKTKQN-NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKG 474 (759)
Q Consensus 396 lv~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~-elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~ 474 (759)
+++|++++|++.++|+|+||+..|++|++|+.+++ |+|+|+|+|+++++|++++|+|++++++++|+++|++||+|+++
T Consensus 422 vl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~ 501 (832)
T PLN03159 422 VAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTG 501 (832)
T ss_pred HHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecC
Confidence 88899999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred Ccccccccccc-ccc-----ccccchhHHHHHHHHHHHhcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCC
Q 044944 475 SVTAFLKPYHQ-HTQ-----SVVASSTHLINAFAQLERSYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHK 548 (759)
Q Consensus 475 r~~~~~~~~~~-~~~-----~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~ 548 (759)
|++|++++|+. ++. +..+++|+++++|++|++++ +.++++++|++|||++||||||++|+||++|+||+||||
T Consensus 502 r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk 580 (832)
T PLN03159 502 RASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHK 580 (832)
T ss_pred CCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCC
Confidence 99999999986 221 13356899999999999764 579999999999999999999999999999999999999
Q ss_pred CCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCe
Q 044944 549 QWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNI 628 (759)
Q Consensus 549 ~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v 628 (759)
+|+.||+++++++.+|.+|+|||++||||||||||||... ..+.+..+..+||+++|+|||||||||+||+|||+||++
T Consensus 581 ~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~-~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p~v 659 (832)
T PLN03159 581 QQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSG-ATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGI 659 (832)
T ss_pred ccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCc-cccccccccceeEEEEecCCcchHHHHHHHHHHhcCCCe
Confidence 9999999999999999999999999999999999999763 222334556789999999999999999999999999999
Q ss_pred EEEEEEeeeCCCCCC----------------CCCCCCcchhhHHHHHHHhhhhc-CCCCeEEEEEEeCChhhHHHHHHhh
Q 044944 629 SLTVVWFVSSDPDTS----------------SGIETTDDRDLDNHAFDEFKDSV-VTKKITLRVEIVKDGIGTTRVIQTL 691 (759)
Q Consensus 629 ~ltv~r~~~~~~~~~----------------~~~~~~~~~~~d~~~~~~~~~~~-~~~~v~~~e~~v~~~~e~~~~i~~~ 691 (759)
++||+||++.++..+ ..++++.|+++||++++|||.++ .+++|.|+||+|+||+||+++||+|
T Consensus 660 ~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~ 739 (832)
T PLN03159 660 TLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSM 739 (832)
T ss_pred EEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHh
Confidence 999999997543211 01224568899999999999999 7789999999999999999999999
Q ss_pred ccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCC--ceEEEeecc
Q 044944 692 TENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEF--SVLVVQQQP 746 (759)
Q Consensus 692 ~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~--SvLvvqq~~ 746 (759)
+++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||.+ ||||||||.
T Consensus 740 ~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 740 DSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred hccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 9999999999999888999999999999999999999999999988 999999997
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-129 Score=1139.11 Aligned_cols=743 Identities=35% Similarity=0.624 Sum_probs=679.0
Q ss_pred CCCCccc-cCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCC---CcCCCCchHHHH
Q 044944 1 HSYGIWH-HNPLQSTTPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTS---TLFPMRNRHILR 76 (759)
Q Consensus 1 ~s~g~~~-~~pl~~~l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~---~~fp~~~~~~l~ 76 (759)
++.|.|. +||++|++|++++|+++++++++++++++||+|||++++||++||++||+.+|++.. .+||.++...++
T Consensus 6 ~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~ 85 (769)
T KOG1650|consen 6 TSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLE 85 (769)
T ss_pred ccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHH
Confidence 4789999 999999999999999999999999999999999999999999999999999999876 789988999999
Q ss_pred HHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccch---hhHHHHHHHHHHhhc
Q 044944 77 TFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVE---SATGIAASVAANSMT 153 (759)
Q Consensus 77 ~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~---~~~~~l~ig~~ls~T 153 (759)
+++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|+..|..+...+.......... ...+..++..+++.|
T Consensus 86 ~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~t 165 (769)
T KOG1650|consen 86 LLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSIT 165 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999988887774333211111 122678889999999
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044944 154 SLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWI 233 (759)
Q Consensus 154 s~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l 233 (759)
+||+++++|.|+|++++++||+++++++++|+.+|.++++..+.......+.....|.+...+++++++.++.||++.|+
T Consensus 166 sfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi 245 (769)
T KOG1650|consen 166 SFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWI 245 (769)
T ss_pred hhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHH
Confidence 99999999999999999999999999999999999999888877665543345667888888999999999999999999
Q ss_pred HhhcccCCCCcchHHHHHHHHHHHHHHHHHHhc-hhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcc
Q 044944 234 VSKTAEGESMKQSHFISIICIVLGVGFVGTCFG-QGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGI 312 (759)
Q Consensus 234 ~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G-~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~ 312 (759)
.||+|++++.++.|....+..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++++++|+|+||+.+|+
T Consensus 246 ~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~ 325 (769)
T KOG1650|consen 246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGL 325 (769)
T ss_pred hhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHH
Q 044944 313 RWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLI 392 (759)
Q Consensus 313 ~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v 392 (759)
++|+..+.. |......+...+++|++++..++.++|+|+||++++|++||+||.++++.++.+++.|+++++.|++++
T Consensus 326 k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~v 403 (769)
T KOG1650|consen 326 KTDISRINK--WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMV 403 (769)
T ss_pred ceeHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHH
Confidence 999998876 777778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccchhhcccccccCCCc-cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeee
Q 044944 393 ANMVIVTSIASAVVGYLYDPSRRYKLDVRRAISKTKQN-NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIE 471 (759)
Q Consensus 393 ~~~lv~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~-elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLve 471 (759)
++++++|.+++|++..+|||.|++..|++|++|+.+++ |+|++.|+|++++++++++++|++++++++|+++|++|++|
T Consensus 404 l~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlve 483 (769)
T KOG1650|consen 404 LMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLVE 483 (769)
T ss_pred HHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeeee
Confidence 99999999999999999999999999999999999999 99999999999999999999999999998899999999999
Q ss_pred ecCCcccccccccc-cc-c--ccccchhHHHHHHHHHHHhcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCC
Q 044944 472 LKGSVTAFLKPYHQ-HT-Q--SVVASSTHLINAFAQLERSYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFH 547 (759)
Q Consensus 472 l~~r~~~~~~~~~~-~~-~--~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h 547 (759)
+.+|++|++++|+. ++ . .....++++.++|+.|++.+...+.++++|+++|+++||||||.+|.++++++|++|||
T Consensus 484 L~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfh 563 (769)
T KOG1650|consen 484 LVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFH 563 (769)
T ss_pred cccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehh
Confidence 99999999999987 33 2 23345679999999999854467999999999999999999999999999999999999
Q ss_pred CCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCC
Q 044944 548 KQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPN 627 (759)
Q Consensus 548 ~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~ 627 (759)
|+|+.||.+++++..+|++|++|+++|||||||+|||| ..+........+.++||++|+||+||||||+|++||++||+
T Consensus 564 k~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~ 642 (769)
T KOG1650|consen 564 KHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAENPR 642 (769)
T ss_pred hhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecC-cccccceecccceeEEEEEecCChhhHHHHHHHHHHhhCCc
Confidence 99996668999999999999999999999999999998 22111122233778999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHh-hhhc-CCCCeEEE-EEEeCChhhHHHHHHhhccCCcEEEEccCC
Q 044944 628 ISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEF-KDSV-VTKKITLR-VEIVKDGIGTTRVIQTLTENFDLFIVGKNH 704 (759)
Q Consensus 628 v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~-~~~~v~~~-e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~ 704 (759)
+++||+||+++++..+....+++++.+|++..+++ +..+ .+.++.|. ||.++|+.||.+++|+++++|||++|||+|
T Consensus 643 v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~ 722 (769)
T KOG1650|consen 643 VTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSH 722 (769)
T ss_pred eEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEEeccc
Confidence 99999999987643333344578889999999998 5454 55678888 699999999999999999999999999999
Q ss_pred CCCccccccCCcCCCCCccchhhhhhhcCCCCC--ceEEEeecc
Q 044944 705 DPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEF--SVLVVQQQP 746 (759)
Q Consensus 705 ~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~--SvLvvqq~~ 746 (759)
+.+++.++|++||+||||||+|||.|+|+||.+ ||||+|||.
T Consensus 723 ~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~ 766 (769)
T KOG1650|consen 723 GMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQL 766 (769)
T ss_pred ccccchhcCchhcccCccccccCccccccccCccceEEEEEeee
Confidence 999999999999999999999999999999966 999999985
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.1e-47 Score=445.43 Aligned_cols=372 Identities=17% Similarity=0.205 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcCh
Q 044944 17 VLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDL 96 (759)
Q Consensus 17 ~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 96 (759)
.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|.++. .+.++.++++|++++||.+|+|+|+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-------~~~i~~laelGvv~LlF~iGLEl~~ 77 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-------VESILHFAEFGVVLMLFVIGLELDP 77 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-------HHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 478999999999999999999999999999999999999999998754 5678999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHH
Q 044944 97 GLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLA 176 (759)
Q Consensus 97 ~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ 176 (759)
+.+|+.+|+++.+|..++++|+++++.++++++..+ ..++++|.+++.||++++.++++|+|+++++.||.+
T Consensus 78 ~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~--------~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~ 149 (621)
T PRK03562 78 QRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRW--------QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSA 149 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 999999999999999999999999888888776544 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHH
Q 044944 177 SSAAMVSDILSWITCMILNGVSDAYNS-NPMKPLYMFPS----LFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISI 251 (759)
Q Consensus 177 ls~a~i~D~~~~~ll~v~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~ 251 (759)
+++++++|+++|++++++..+...+.. +.......++. .+++++++.++.||+++|+.+. +.+|.+...+
T Consensus 150 l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~~~ 224 (621)
T PRK03562 150 FAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTAVA 224 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHH
Confidence 999999999999999887655432111 11111222222 2223333445566666666553 2467888888
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHH
Q 044944 252 ICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIM 331 (759)
Q Consensus 252 l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~ 331 (759)
++++++++++++.+|+|+++|||++|+++++ .+++++++++++++ .++|+|+||+++|+++|+..+... ++.++.++
T Consensus 225 l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~-~~~il~~~ 301 (621)
T PRK03562 225 LFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN-PLRILILL 301 (621)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH-HHHHHHHH
Confidence 8899999999999999999999999999998 57899999999999 899999999999999999887654 33445556
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044944 332 VMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYD 411 (759)
Q Consensus 332 ~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~ 411 (759)
++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |++++|++..+|+
T Consensus 302 ~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~~ 380 (621)
T PRK03562 302 LGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLLD 380 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 678899999999999999999999999999999999999999999999999999999999987776 8888888877765
Q ss_pred c
Q 044944 412 P 412 (759)
Q Consensus 412 ~ 412 (759)
+
T Consensus 381 ~ 381 (621)
T PRK03562 381 R 381 (621)
T ss_pred H
Confidence 4
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3.9e-47 Score=440.31 Aligned_cols=371 Identities=18% Similarity=0.264 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChh
Q 044944 18 LLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLG 97 (759)
Q Consensus 18 ~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 97 (759)
++.++.+++.++.+...+++|+|+|+++|||++|+++||+++|.+++ .+.+..++++|++++||.+|+|+|++
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-------~~~i~~laelGvv~LLF~iGLel~~~ 78 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-------VDEILHFSELGVVFLMFIIGLELNPS 78 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-------HHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 57788999999999999999999999999999999999999998754 46688999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHH
Q 044944 98 LIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLAS 177 (759)
Q Consensus 98 ~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~l 177 (759)
.+|+.+|+++.+|..++++|+++++.++++++..+ ..++++|++++.||++++.++++|+|+.+++.||+++
T Consensus 79 ~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~--------~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l 150 (601)
T PRK03659 79 KLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSW--------QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGF 150 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--------HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHH
Confidence 99999999999999999999988777666654433 5788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHH
Q 044944 178 SAAMVSDILSWITCMILNGVSDAYNSN--PMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISIICIV 255 (759)
Q Consensus 178 s~a~i~D~~~~~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~ 255 (759)
+..+++|+.++++++++..+....... +......++..+++++++.++.+|+++|+.+. +.+|.+...+++++
T Consensus 151 ~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~v 225 (601)
T PRK03659 151 SVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLV 225 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHH
Confidence 999999999999988876554322211 11111222222233333445566666665443 34678888888999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHH
Q 044944 256 LGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSY 335 (759)
Q Consensus 256 l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~ 335 (759)
++++++++.+|+|+++|||++|+++++ .+++++++++++++ .++|+|+||+++|+++|+..+.+. |+.++.++++.+
T Consensus 226 l~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~-~~~il~~~~~~l 302 (601)
T PRK03659 226 LGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH-LLWVLISVVVLV 302 (601)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh-HHHHHHHHHHHH
Confidence 999999999999999999999999999 56899999999999 899999999999999999887655 445566677788
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044944 336 IGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYDP 412 (759)
Q Consensus 336 ~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~ 412 (759)
++|++++++.++++|+++++++.+|+.|+++|+++++++..+.+.|+++++.|+.+++++++ |++++|++..+|++
T Consensus 303 ~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~~ 378 (601)
T PRK03659 303 AVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999887777 77889988877765
No 5
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=5.3e-47 Score=438.50 Aligned_cols=374 Identities=17% Similarity=0.239 Sum_probs=318.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChh
Q 044944 18 LLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLG 97 (759)
Q Consensus 18 ~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 97 (759)
++..+.++++++.+++.++||+|+|.+++||++|+++||+++|.++. .+.++.++++|++++||.+|+|+|++
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-------~~~~~~la~lGli~llF~~Gle~d~~ 79 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-------TKLAPELAELGVILLMFGVGLHFSLK 79 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-------hHHHHHHHHHHHHHHHHHhHhcCCHH
Confidence 34567888999999999999999999999999999999999998653 56789999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHH
Q 044944 98 LIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLAS 177 (759)
Q Consensus 98 ~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~l 177 (759)
.+|+.++..+..++.++++|+++++++++.++..+ ..++++|+++|.||++++.++++|+|+++++.||+++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l 151 (558)
T PRK10669 80 DLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSL--------MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAI 151 (558)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHH
Confidence 99999888888888899999999888877776443 5678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc---CCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHH
Q 044944 178 SAAMVSDILSWITCMILNGVSDA---YNSNPM----KPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFIS 250 (759)
Q Consensus 178 s~a~i~D~~~~~ll~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~ 250 (759)
++++++|+++|++++++..+... +..+.. ...+.++..++++++..++.|++..|+.++.++.+ .+|.+...
T Consensus 152 ~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~ 230 (558)
T PRK10669 152 GWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLS 230 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHH
Confidence 99999999999988877654321 111111 12345556667777788889999999999987654 57888887
Q ss_pred HHHHHHHHHHH-HHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHH
Q 044944 251 IICIVLGVGFV-GTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMEL 329 (759)
Q Consensus 251 ~l~~~l~~~~~-~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~ 329 (759)
++++++++++. ++.+|+|+++|||++|+++|+ ++.++++.+...++ .++|+|+||+++|+++|+..+.+. +.....
T Consensus 231 ~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~-~~~~~~ 307 (558)
T PRK10669 231 VLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PLAVLA 307 (558)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH-HHHHHH
Confidence 88888887765 699999999999999999998 56788888888777 789999999999999999877544 333455
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHH-HHHH
Q 044944 330 IMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASA-VVGY 408 (759)
Q Consensus 330 i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~p-lv~~ 408 (759)
++++.+++|++++++.++++|+++|+++.+|+.|++||+++++++..+++.|+++++.|+++++++++ |++.+| +.++
T Consensus 308 ~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~-t~~~~P~l~~~ 386 (558)
T PRK10669 308 TLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAIL-SIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999988 555555 4555
Q ss_pred hcC
Q 044944 409 LYD 411 (759)
Q Consensus 409 l~~ 411 (759)
..+
T Consensus 387 ~~~ 389 (558)
T PRK10669 387 LER 389 (558)
T ss_pred hhH
Confidence 443
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-45 Score=402.32 Aligned_cols=379 Identities=21% Similarity=0.351 Sum_probs=322.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcC
Q 044944 16 PVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQID 95 (759)
Q Consensus 16 ~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d 95 (759)
...+.|+.++++++.+.+.++||+|+|+++||+++|+++||..++.. .+..+.++.++++|++++||.+|+|+|
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~------~~~~~~i~~laelGvi~LlF~~GLE~~ 78 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI------IESSEIIELLAELGVVFLLFLIGLEFD 78 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc------CCchHHHHHHHHHhHHHHHHHHHHCcC
Confidence 34688999999999999999999999999999999999999554443 234789999999999999999999999
Q ss_pred hhHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHH-HhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhH
Q 044944 96 LGLIKHIRRR-AVAIGFFGCLIPLIFGMSSFRL-IQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELG 173 (759)
Q Consensus 96 ~~~l~~~~~~-~~~ia~~~~~~p~~~~~~~~~~-l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g 173 (759)
++++||++|+ +...+..++..|+.++....+. ++..+ ..++++|.+++.||.++++++++|+|+.+++.|
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~--------~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g 150 (397)
T COG0475 79 LERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL--------IAALFLGAALALSSTAIVLKILMELGLLKTREG 150 (397)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 9999999999 8888888899998888655543 44443 569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHH
Q 044944 174 RLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISIIC 253 (759)
Q Consensus 174 ~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~ 253 (759)
++++++++++|+.++++++++..+..++.......+.......+|.++..+..|++.+|+.|+..+. +.+|.....+++
T Consensus 151 ~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~ 229 (397)
T COG0475 151 QLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLL 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHH
Confidence 9999999999999999999999887654432222445555666666666665677777777776543 357888999999
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHH
Q 044944 254 IVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVM 333 (759)
Q Consensus 254 ~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~ 333 (759)
+++.+++++|.+|+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|+.+|+..+... +..+..++.+
T Consensus 230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~-~~~~l~~~~~ 308 (397)
T COG0475 230 LVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN-LLLILLLVAL 308 (397)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc-HHHHHHHHHH
Confidence 999999999999999999999999999996543379999999997779999999999999999998877 3346778888
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044944 334 SYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYD 411 (759)
Q Consensus 334 ~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~ 411 (759)
..++|.+++++.++..|.+.+++...|+.+.++|+++++.++.+.+ +.++++.++.++.+++++|.+.+++.+.+++
T Consensus 309 ~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~ 385 (397)
T COG0475 309 AILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLK 385 (397)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998875 5788888888888887766655555555554
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1e-39 Score=377.48 Aligned_cols=382 Identities=14% Similarity=0.098 Sum_probs=315.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 044944 14 TTPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQ 93 (759)
Q Consensus 14 ~l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle 93 (759)
+...++++++++++++.+++.+++|+++|.+++++++|+++||+++|.+.. ++.+..+.++++|+++++|..|+|
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~-----~~~~~~~~i~~l~L~~iLF~~Gl~ 77 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF-----DNYPLAYLVGNLALAVILFDGGLR 77 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc-----CcHHHHHHHHHHHHHHHHHcCccC
Confidence 345678899999999999999999999999999999999999999997542 235788999999999999999999
Q ss_pred cChhHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccc-cCCh
Q 044944 94 IDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSF-RLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNM-LNSE 171 (759)
Q Consensus 94 ~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~-~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l-~~s~ 171 (759)
+|++.+|+.+++++.+++.++++|++++...+ ++++..+ ..++++|+++++||++++.++++|+|+ ++++
T Consensus 78 ~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~--------~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 78 TRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDW--------LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--------HHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 99999999999999999999999998865444 4444433 678999999999999999999999995 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHH
Q 044944 172 LGRLASSAAMVSDILSWITCMILNGVSDAYNSN-PMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFIS 250 (759)
Q Consensus 172 ~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~ 250 (759)
+++++.+++.+||.++++++.++..+..++..+ .+..+..++..+++.++..++.++++.|+.++... ..++.+..+
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~ 227 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPIL 227 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHH
Confidence 999999999999999999888777655433221 12223444555555666667788889999988743 124567788
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHH
Q 044944 251 IICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELI 330 (759)
Q Consensus 251 ~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i 330 (759)
+++++++++++++.+|.|+++|+|++|++++|.++..+...+++.+...+++.|+||+++|+.+|++.+.+..+...++.
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~ 307 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLA 307 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999765555555666665688999999999999999988765434333444
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 044944 331 MVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTIT-SQIFALLIANMVIVTSIASAVVGYL 409 (759)
Q Consensus 331 ~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~-~~~~~~~v~~~lv~t~i~~plv~~l 409 (759)
+++.+++|+++++++++.+++++||+..+||. ++||.++++++..+.+.++.+ +..|+++.+++++++.+.++.+..+
T Consensus 308 ~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~ 386 (562)
T PRK05326 308 LFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA 386 (562)
T ss_pred HHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence 45678999999999999999999999999995 899999999999999889886 4677888888888777777777665
Q ss_pred cC
Q 044944 410 YD 411 (759)
Q Consensus 410 ~~ 411 (759)
.+
T Consensus 387 a~ 388 (562)
T PRK05326 387 AR 388 (562)
T ss_pred HH
Confidence 53
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=4.4e-36 Score=317.24 Aligned_cols=271 Identities=23% Similarity=0.356 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhh
Q 044944 27 LSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRA 106 (759)
Q Consensus 27 ~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~ 106 (759)
+++.+.+.++||+|+|.+++++++|+++||+++|.+++ .+.++.++++|+++++|.+|+|+|++.+||++|++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~-------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~ 74 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN-------VEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAA 74 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC-------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45778899999999999999999999999999998754 56899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHH
Q 044944 107 VAIGFFGCLIP-LIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDI 185 (759)
Q Consensus 107 ~~ia~~~~~~p-~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~ 185 (759)
..+++.++++| +.+++.++++++..+ ..++++|+++++||++++.++++|+|+.+++.|+++++++++||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~ 146 (273)
T TIGR00932 75 FGVGVLQVLVPGVLLGLLLGHLLGLAL--------GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDI 146 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHH
Confidence 99999999999 667776777665443 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 044944 186 LSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCF 265 (759)
Q Consensus 186 ~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~ 265 (759)
++++++.+......+...+.....+.+...+++.++..++.++...|+.|+.++.++ +|.+...++.+++..++++|.+
T Consensus 147 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~ 225 (273)
T TIGR00932 147 AVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLL 225 (273)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHh
Confidence 999999888776543222222333444455555556667788889999988776543 5788888999999999999999
Q ss_pred chhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhccccc
Q 044944 266 GQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWE 315 (759)
Q Consensus 266 G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~d 315 (759)
|.|+++|||++|+++++. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 226 g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 226 GLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred CCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 999999999999999995 45788999999997 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=7.9e-40 Score=362.81 Aligned_cols=371 Identities=27% Similarity=0.403 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhh
Q 044944 24 VIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIR 103 (759)
Q Consensus 24 lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 103 (759)
++++.+.+.+.++||+++|.+++|+++|+++||.+++.+++ . ...++.++++|+.+++|.+|+|+|.+.+||++
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~----~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~ 76 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP----D--NPSFELLAEIGLAFLLFEAGLELDIKELRRNW 76 (380)
T ss_dssp ---------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc----h--hhHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 34455667777899999999999999999999999886553 1 47789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHH-hhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHH
Q 044944 104 RRAVAIGFFGCLIPLIF-GMSSFRLI-QQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAM 181 (759)
Q Consensus 104 ~~~~~ia~~~~~~p~~~-~~~~~~~l-~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~ 181 (759)
|+++.+++.++++|+++ ++.+++++ ...+ .+..++++|.+++.||++++.++++|.+..+++.+++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~ 150 (380)
T PF00999_consen 77 RRALALGLVGFLLPFILVGFLLSFFLFILGL------SWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESV 150 (380)
T ss_dssp -------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTT
T ss_pred ccccccccceeeehhhHHHHHHHHhhccchh------hhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhch
Confidence 99999999999999998 66666432 1111 1367899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHH
Q 044944 182 VSDILSWITCMILNGVSDAYN-SNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGF 260 (759)
Q Consensus 182 i~D~~~~~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~ 260 (759)
+||+++++++.+.......+. .+.......++..+...++..++.+++..|+.|+. ++.++.+..+++++++..++
T Consensus 151 i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 227 (380)
T PF00999_consen 151 INDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYG 227 (380)
T ss_dssp TTTTTTTTTT----------------------------------------------------------------------
T ss_pred hhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhcc
Confidence 999999999888777652211 11122222222322233333334444444444442 23467888899999999999
Q ss_pred HHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccc--cchhhHHHHHHHHHHHHH
Q 044944 261 VGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLK--ESSTRKMELIMVMSYIGK 338 (759)
Q Consensus 261 ~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~--~~~~~~~~~i~~~~~~~K 338 (759)
++|.+|.++++|+|++|+++++ .+.++++.++++++.++++.|+||+++|+++|++.+. ...+.....+.+..+++|
T Consensus 228 ~a~~~g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k 306 (380)
T PF00999_consen 228 LAEILGLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGK 306 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhh
Confidence 9999999999999999999996 5677889999999987999999999999999998885 345666667777777999
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 044944 339 FTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLY 410 (759)
Q Consensus 339 ~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~ 410 (759)
++++++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.++.++.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 307 FIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ----------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred hceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999985555555566544
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=273.24 Aligned_cols=378 Identities=17% Similarity=0.246 Sum_probs=308.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHh
Q 044944 12 QSTTPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLG 91 (759)
Q Consensus 12 ~~~l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~G 91 (759)
+|..|+ +..+..-+..+++++.+..|+|+|+.+||++||++.||..-|...+ ......++++|++++||-+|
T Consensus 2 ~h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad-------~~La~~LAelGViLLmFgvG 73 (408)
T COG4651 2 HHDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD-------QTLAPELAELGVILLMFGVG 73 (408)
T ss_pred CCCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc-------hhHHHHHHHhhHHHHHHhcc
Confidence 344453 3344455667889999999999999999999999999988777653 45556999999999999999
Q ss_pred hhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCCh
Q 044944 92 VQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSE 171 (759)
Q Consensus 92 le~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~ 171 (759)
++..++++.....-++--++.++.+-...+..+++.++.++. ..+.+|.++|..|..|..|.++|.++.+++
T Consensus 74 LhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~~--------~glvfGlaLS~aSTVvllraLqEr~lidt~ 145 (408)
T COG4651 74 LHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFG--------TGIVFGLALSVASTVVLLRALEERQLIDTQ 145 (408)
T ss_pred hheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcc--------cceeeeehhhhHHHHHHHHHHHHhcccccc
Confidence 999999997766556666777777777788888887776653 468899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 044944 172 LGRLASSAAMVSDILSWITCMILNGVSDA---YNSNPM----KPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMK 244 (759)
Q Consensus 172 ~g~l~ls~a~i~D~~~~~ll~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~ 244 (759)
.||++++--++.|+..+..+...-++... ...... ...+...+...|+.++.++.|++..|+..+.... ..+
T Consensus 146 rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-Gsr 224 (408)
T COG4651 146 RGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSR 224 (408)
T ss_pred CceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcH
Confidence 99999999999999988877766544321 111111 2234566888999999999999999999886443 357
Q ss_pred chHHHHHHHHHHHHHHHH-HHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccch
Q 044944 245 QSHFISIICIVLGVGFVG-TCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESS 323 (759)
Q Consensus 245 e~~~~~~l~~~l~~~~~~-~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~ 323 (759)
|.+...+++.++..++-+ +.+|.++.+|||++|+++.+ +++.++..+..-++ .+.|.-+||+.+||..|+..+.+.+
T Consensus 225 Elf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~p 302 (408)
T COG4651 225 ELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQP 302 (408)
T ss_pred HHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcch
Confidence 888889999988777765 68999999999999999998 46788888887777 8999999999999999998887776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHH
Q 044944 324 TRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIAS 403 (759)
Q Consensus 324 ~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~ 403 (759)
+. +....++...+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++.+.--..++...++ +++..
T Consensus 303 l~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sIl~n 380 (408)
T COG4651 303 LA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SILLN 380 (408)
T ss_pred HH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HHHHh
Confidence 65 44455566789999999999999999999999999999999999999999999999986655555555554 88888
Q ss_pred HHHHHhc
Q 044944 404 AVVGYLY 410 (759)
Q Consensus 404 plv~~l~ 410 (759)
|+.....
T Consensus 381 Pllf~~~ 387 (408)
T COG4651 381 PLLFALL 387 (408)
T ss_pred HHHHHHH
Confidence 9765433
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=1.8e-26 Score=264.03 Aligned_cols=354 Identities=11% Similarity=0.038 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHHHHHHHc-ccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhH
Q 044944 20 LQMVVIFLSTRAIYFLLR-PFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGL 98 (759)
Q Consensus 20 l~l~lil~~~~l~~~l~~-rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~ 98 (759)
..++..+++..++..+++ |+.+|..+.++++|+++||.+++.+++.-+.......++ ++++++++.+|.+|++++.+.
T Consensus 16 ~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~ 94 (810)
T TIGR00844 16 SCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVELPRKY 94 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHHHHHHHHHHhCCHHH
Confidence 334444444445555555 999999999999999999999987764001111233444 999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHH---hccccCChhHHH
Q 044944 99 IKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLK---ELNMLNSELGRL 175 (759)
Q Consensus 99 l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~---el~l~~s~~g~l 175 (759)
+++.|+..+.+++.++.+++++++++++++...+. +..++++|+++++|++.....+++ ..+ ++.++..+
T Consensus 95 Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~------~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~l 167 (810)
T TIGR00844 95 MLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLN------FPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNL 167 (810)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhH
Confidence 99999999999999999999998888877632221 368999999999999766666665 223 56788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CcchHHHH
Q 044944 176 ASSAAMVSDILSWITCMILNGVSDAY--NSNPM-K-PLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGES-MKQSHFIS 250 (759)
Q Consensus 176 ~ls~a~i~D~~~~~ll~v~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~-~~e~~~~~ 250 (759)
+.+.+.+||.++++++.+.+.+.... ...+. . .+..++..+++.+++.+++..+..|+.++..+.+. ..+.+..+
T Consensus 168 L~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~ 247 (810)
T TIGR00844 168 LSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAF 247 (810)
T ss_pred HhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 99999999999998876665444211 11111 1 12233333333444444444455555443321111 23456667
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhH-HHhHHhhhhhhhhHHHHHHHhccccccccccc-----chh
Q 044944 251 IICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQ-LVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKE-----SST 324 (759)
Q Consensus 251 ~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~-l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~-----~~~ 324 (759)
.++++++++.+++.+|.++++++|++|+++.+.....++ -...+......++..++|+++|+.+....+.. ..|
T Consensus 248 ~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w 327 (810)
T TIGR00844 248 YLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVW 327 (810)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHH
Confidence 788888899999999999999999999999986432222 22335556678899999999999998776643 245
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHhhhcchhhHHHHhhhcccCc
Q 044944 325 RKMELIMVMSYIGKFTGVILSSSFF--GISFIKASCLAFIMCCRGIPEIAMYCMWKDKKT 382 (759)
Q Consensus 325 ~~~~~i~~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~ 382 (759)
..+++.+++.++.|+.++++...+. ..+++|++++|| ..+||..+++++.++++.+.
T Consensus 328 ~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 328 RLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 5566666677788988888764443 468999999999 79999999999999887764
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.95 E-value=7.4e-26 Score=258.57 Aligned_cols=367 Identities=12% Similarity=0.057 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccC-cCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHh
Q 044944 23 VVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGD-DTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKH 101 (759)
Q Consensus 23 ~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~-~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 101 (759)
..+++.+.....+++|+++|.+++++++|+++||..++. .+ + + . +.+..+++..++|..|+++|.+.+||
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~---~--~-~---~~~~~~~Lp~lLF~~g~~~~~~~l~~ 74 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVP---L--D-R---EIVLFLFLPPLLFEAAMNTDLRELRE 74 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCC---C--C-H---HHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344555666778899999999999999999999865432 11 1 1 1 23455899999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHH
Q 044944 102 IRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAM 181 (759)
Q Consensus 102 ~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~ 181 (759)
+++....+++.++++|++++....+++... .+..++++|+++|+|+++++.+++++.+ .++++.+++.+++.
T Consensus 75 ~~~~i~~la~~~vlit~~~v~~~~~~~~~l-------~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESl 146 (525)
T TIGR00831 75 NFRPIALIAFLLVVVTTVVVGFSLNWILGI-------PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESL 146 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhh
Confidence 999999999999999999877666654221 1368999999999999999999999977 57789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHH
Q 044944 182 VSDILSWITCMILNGVSDA-YNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGF 260 (759)
Q Consensus 182 i~D~~~~~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~ 260 (759)
+||..+++++.++.....+ +..+.......++..++..++.++++..+..|+.++..+. +.....+++++.+++++
T Consensus 147 lND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~ 223 (525)
T TIGR00831 147 LNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFL 223 (525)
T ss_pred hcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHH
Confidence 9999999999888776653 2222222333333333333344444455666666553322 33556778888999999
Q ss_pred HHHHhchhhhHHHHHHHhhcCCCCCc---hh---HHHhHHhhhhhhhhHHHHHHHhccccccccc--cc-c--hh-----
Q 044944 261 VGTCFGQGSFLGCFVFGLCLPDGPPL---GT---QLVNKLDFFTSGFLIPVFCAMSGIRWEMYLL--KE-S--ST----- 324 (759)
Q Consensus 261 ~~~~~G~~~~lGafvaGl~i~~~~~~---~~---~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l--~~-~--~~----- 324 (759)
++|.+|.|+++++|++|+++++..+. .. .-.+.+......++.+++|+++|+.++.... .. . .+
T Consensus 224 lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~ 303 (525)
T TIGR00831 224 LAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVIL 303 (525)
T ss_pred HHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 99999999999999999999985433 11 1233444455788999999999999864211 11 0 01
Q ss_pred hH---HHHHHHHHHHHHHHHHHHHH--Hh-----hCCChHHHHHHHHHhhhcchhhHHHHhhhc-c--cC--cCchh---
Q 044944 325 RK---MELIMVMSYIGKFTGVILSS--SF-----FGISFIKASCLAFIMCCRGIPEIAMYCMWK-D--KK--TITSQ--- 386 (759)
Q Consensus 325 ~~---~~~i~~~~~~~K~i~~~l~~--~~-----~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~-~--~~--~i~~~--- 386 (759)
.. .+++.......|++..+... ++ .++++|+.+.++| .+.||.++++++.... . .+ .-..+
T Consensus 304 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~ 382 (525)
T TIGR00831 304 ALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELV 382 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHH
Confidence 00 11222223345554433321 11 2478999999999 5999999998875321 1 11 11112
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhc
Q 044944 387 --IFALLIANMVIVTSIASAVVGYLY 410 (759)
Q Consensus 387 --~~~~~v~~~lv~t~i~~plv~~l~ 410 (759)
.+.+++++.++.....+|+++++-
T Consensus 383 ~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 383 FLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 334445555554544566666643
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-22 Score=225.67 Aligned_cols=381 Identities=13% Similarity=0.103 Sum_probs=283.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcCh
Q 044944 17 VLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDL 96 (759)
Q Consensus 17 ~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 96 (759)
..++++.+++....+...+.+|++.|.+..+++.|++.||.+++...+ +....-+.+-.+++..++|..|+|+|.
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~-----~~~~~~el~~~l~l~ilLf~~g~~l~~ 80 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP-----DLELDPELFLVLFLAILLFAGGLELDL 80 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc-----cccCChHHHHHHHHHHHHHHhHhcCCH
Confidence 356788888899999999999999999999999999999998887764 111122333499999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHH
Q 044944 97 GLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLA 176 (759)
Q Consensus 97 ~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ 176 (759)
+.+||+++....+++.+++++.+......+++.+.+ .+..++.+|+++|+|++.++.++.++.+ .+.++.++.
T Consensus 81 ~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i------~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL 153 (429)
T COG0025 81 RELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI------PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTIL 153 (429)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHH
Confidence 999999999999999999999988777777773322 2468999999999999988899888855 788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCcchHHHHHHHH
Q 044944 177 SSAAMVSDILSWITCMILNGVSDAYNS-NPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGE-SMKQSHFISIICI 254 (759)
Q Consensus 177 ls~a~i~D~~~~~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~-~~~e~~~~~~l~~ 254 (759)
.+++.+||..+++++.+......++.. +.......++..++..+.+.++...+..|+.++..+.+ ........+.+..
T Consensus 154 ~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~ 233 (429)
T COG0025 154 EGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLL 233 (429)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 999999999999999888877664322 22233333333333333333344444444444432210 1134567888999
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHhhcC-----CCCCch-hHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHH
Q 044944 255 VLGVGFVGTCFGQGSFLGCFVFGLCLP-----DGPPLG-TQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKME 328 (759)
Q Consensus 255 ~l~~~~~~~~~G~~~~lGafvaGl~i~-----~~~~~~-~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~ 328 (759)
.+..+.++|.+|.+++++.+++|++.. +..+.. +...+.+......++.-+.|+..|++++........+...+
T Consensus 234 ~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l 313 (429)
T COG0025 234 AFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLL 313 (429)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence 999999999999999999999998774 112212 33344455556888999999999999998877655566677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHhhhcchhhHHHHhhhccc-CcCchh-----HHHHHHHHHH
Q 044944 329 LIMVMSYIGKFTGVILSSSFFG------ISFIKASCLAFIMCCRGIPEIAMYCMWKDK-KTITSQ-----IFALLIANMV 396 (759)
Q Consensus 329 ~i~~~~~~~K~i~~~l~~~~~~------~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~-~~i~~~-----~~~~~v~~~l 396 (759)
+.++..+++|+++++...+..+ .+++|+++++| -++||.++++++...... .....+ .+..++.+++
T Consensus 314 ~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~ 392 (429)
T COG0025 314 VALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLL 392 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHH
Confidence 8888889999999999998853 89999999999 599999999988765422 111122 3344444444
Q ss_pred HHHHHHHHHHHHhc
Q 044944 397 IVTSIASAVVGYLY 410 (759)
Q Consensus 397 v~t~i~~plv~~l~ 410 (759)
+.+...+|+.++..
T Consensus 393 v~g~t~~~l~~~~~ 406 (429)
T COG0025 393 VQGLTLPPLAKKLE 406 (429)
T ss_pred HHhhhHHHHHHHhc
Confidence 44444555555544
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.5e-23 Score=215.66 Aligned_cols=370 Identities=14% Similarity=0.083 Sum_probs=303.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhh
Q 044944 13 STTPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGV 92 (759)
Q Consensus 13 ~~l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gl 92 (759)
++...+++.-.+++.++.+.+.+..|+|.|..+-.+..|++.|--++|.++. ++...-..++++++++++|..|+
T Consensus 3 ~t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f-----dNy~~Ay~vg~lALaiILfdgG~ 77 (574)
T COG3263 3 HTINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF-----DNYPFAYMVGNLALAIILFDGGF 77 (574)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc-----CccHHHHHHHHHHHHHHhhcCcc
Confidence 4455566666688888999999999999999999999999999999998764 45778889999999999999999
Q ss_pred hcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-hhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCCh
Q 044944 93 QIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLI-QQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSE 171 (759)
Q Consensus 93 e~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l-~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~ 171 (759)
.++++.+|...++++.++..+++++-.+....+.++ ...| .+.+++|+++.+|+.+.+..+|.+.+ +|.+
T Consensus 78 ~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~w--------le~~LiGAiVgSTDAAAVF~lL~~~n-l~er 148 (574)
T COG3263 78 GTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDW--------LEGLLIGAIVGSTDAAAVFSLLGGKN-LNER 148 (574)
T ss_pred CCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHH--------HHHHHHHHhhccccHHHHHHHHccCC-hhhh
Confidence 999999999999999999999999988776666555 4444 68999999999999999999998877 5778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHH
Q 044944 172 LGRLASSAAMVSDILSWITCMILNGVSDAY-NSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFIS 250 (759)
Q Consensus 172 ~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~ 250 (759)
++.+...++--||-.++++....+.+...+ ++-.+..+..++...++.++..+.+.++..|+++|+.-+ +..|..+
T Consensus 149 v~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil 225 (574)
T COG3263 149 VASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPIL 225 (574)
T ss_pred hhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHH
Confidence 888888889999999988765555544433 221123334466777888888888899999999997432 5688899
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc-hhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHH
Q 044944 251 IICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPL-GTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMEL 329 (759)
Q Consensus 251 ~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~-~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~ 329 (759)
+++..+..+.+++.+|.+++++.+++|+.+.|.+-. ++.+.+..+.+ .++..-+.|...|+.++++.+.......+.+
T Consensus 226 ~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~iavPailL 304 (574)
T COG3263 226 ALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPIAIPAILL 304 (574)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHhhHHHHHH
Confidence 999999999999999999999999999999997533 44566666777 8899999999999999999887766666677
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchh-HHHHHHHHHHHHHHH
Q 044944 330 IMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQ-IFALLIANMVIVTSI 401 (759)
Q Consensus 330 i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~-~~~~~v~~~lv~t~i 401 (759)
.+.+.+++|.+++|+...-++.+++|..+++| -.-||.++++++....-.|.-+.+ .|++..+.++++-.+
T Consensus 305 ~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 305 SLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred HHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 77788999999999999999999999999999 599999999999987766654433 455554555543333
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.90 E-value=6.8e-21 Score=217.65 Aligned_cols=365 Identities=12% Similarity=0.032 Sum_probs=248.1
Q ss_pred HHHccc-CCchhHHHHHHHHhcCcccccC--cCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHH
Q 044944 34 FLLRPF-HQTTVMAQILGGAIIGPSILGD--DTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIG 110 (759)
Q Consensus 34 ~l~~rl-~~P~iv~~IlaGiilGP~~lg~--~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia 110 (759)
..-|+. ++|..+..++.|+++|+...+. .+..-+ .-+.+-.+.+..++|..|.++|.+.++++.+..+.+|
T Consensus 27 ~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l------~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lA 100 (559)
T TIGR00840 27 LTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTL------DSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFA 100 (559)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCc------CHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 333444 4999999999999999864332 221111 1245556778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-cccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHH
Q 044944 111 FFGCLIPLIFGMSSFRLIQQQKT-RFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWI 189 (759)
Q Consensus 111 ~~~~~~p~~~~~~~~~~l~~~~~-~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ 189 (759)
+.+++++.++.....+++..... ......+..++.+|+++|+|++..+..++++.+ .+.++-.++.+++++||.++++
T Consensus 101 v~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIV 179 (559)
T TIGR00840 101 VVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVV 179 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHH
Confidence 99999998877666654422110 001113578999999999999999999999988 6889999999999999999999
Q ss_pred HHHHHHHHhhcCCC--CCchhH---HH-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHH
Q 044944 190 TCMILNGVSDAYNS--NPMKPL---YM-FPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGT 263 (759)
Q Consensus 190 ll~v~~~~~~~~~~--~~~~~~---~~-~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~ 263 (759)
++.++..+...+.. +..... .. +...++ .++.+++...+..++.|+.... +.....+++++.++++.++|
T Consensus 180 Lf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~G-GiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~~~yl~Y~lAE 255 (559)
T TIGR00840 180 LYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCG-GLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFLISYLSYLFAE 255 (559)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHHH
Confidence 99888776542111 111111 11 111122 3334445556666677765432 23456677888889999999
Q ss_pred HhchhhhHHHHHHHhhcCCC-----CCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHH
Q 044944 264 CFGQGSFLGCFVFGLCLPDG-----PPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGK 338 (759)
Q Consensus 264 ~~G~~~~lGafvaGl~i~~~-----~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K 338 (759)
.+|.+++++.+++|+++.+. .+..+.-.+.+......+...+.|+++|+.+-... ....|..++..+++.++.|
T Consensus 256 ~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~~~~~~~i~~~l~~~ll~R 334 (559)
T TIGR00840 256 TLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-HEWNWAFVVATLSFCVIYR 334 (559)
T ss_pred HhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999642 22222223344444577888999999999763221 1113444444555667889
Q ss_pred HHHHHHHHHh------hCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHH-----HHHHHHHHHHHHHHHHHHH
Q 044944 339 FTGVILSSSF------FGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIF-----ALLIANMVIVTSIASAVVG 407 (759)
Q Consensus 339 ~i~~~l~~~~------~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~-----~~~v~~~lv~t~i~~plv~ 407 (759)
+++++..++. .+.+++|.+.++| .+.||.++++++....+.+.-..+.+ .++++++++....++|+++
T Consensus 335 ~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~ 413 (559)
T TIGR00840 335 VLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVE 413 (559)
T ss_pred HHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHH
Confidence 9888876653 3589999999999 69999999998875433322222322 2333344444444577777
Q ss_pred HhcC
Q 044944 408 YLYD 411 (759)
Q Consensus 408 ~l~~ 411 (759)
++.-
T Consensus 414 ~L~l 417 (559)
T TIGR00840 414 VLKV 417 (559)
T ss_pred HhCC
Confidence 7653
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.75 E-value=1.3e-15 Score=165.18 Aligned_cols=294 Identities=13% Similarity=0.181 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChh-------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHH
Q 044944 74 ILRTFAEFGMILHIFVLGVQIDLG-------LIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAAS 146 (759)
Q Consensus 74 ~l~~l~~lgl~~llF~~Gle~d~~-------~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~i 146 (759)
..+.+.+--+.+|.|.+|+|+..+ ..||..-+ ..-++.|+++|.++-..+. .... ...--+
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~~n----~~~~-------~~~~GW 129 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVAVN----LAGG-------GALRGW 129 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHHHh----CCch-------hhhhhh
Confidence 445566666788999999999554 33333322 3567788888886533321 1110 111222
Q ss_pred HHHHhhccHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 044944 147 VAANSMTSLVVVTSVLKELNML-NSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFL 225 (759)
Q Consensus 147 g~~ls~Ts~~vv~~iL~el~l~-~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 225 (759)
.+-+.|+.+....++..+|.. ++.++...++.|++||+.++++++++. ++. ....+.......+ ...
T Consensus 130 -~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~---i~~~~L~~a~~~~--~~l-- 197 (423)
T PRK14853 130 -AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSE---LNLEALLLALVPL--ALF-- 197 (423)
T ss_pred -hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCC---CCHHHHHHHHHHH--HHH--
Confidence 344568889999999998754 889999999999999999999988877 111 1222222221111 111
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC-----------CchhHHHhHH
Q 044944 226 LRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGP-----------PLGTQLVNKL 294 (759)
Q Consensus 226 ~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~-----------~~~~~l~~kl 294 (759)
|+.++. ++++.+.+.++. +.+.+..+..|+|+.+|+|++|+++|..+ +..+++++++
T Consensus 198 ------~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L 265 (423)
T PRK14853 198 ------WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRL 265 (423)
T ss_pred ------HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHH
Confidence 222232 244555665553 36677889999999999999999999521 2357899999
Q ss_pred hhhhhhhhHHHH-HHHhcccccc-cccccc-hhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHH
Q 044944 295 DFFTSGFLIPVF-CAMSGIRWEM-YLLKES-STRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAF 361 (759)
Q Consensus 295 ~~~~~~~~~PlF-F~~~G~~~dl-~~l~~~-~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl 361 (759)
++++..+++|+| |+..|.++|. ..+.+. .-.....+++..++||.+|.+..++.. +++|++-..+|+
T Consensus 266 ~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~ 345 (423)
T PRK14853 266 RPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL 345 (423)
T ss_pred HHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH
Confidence 999999999999 9999999986 434111 112456777788899999988777653 578899888888
Q ss_pred HhhhcchhhHHHHhhhcc-cCcCchhHHHHHHHHHHHHHHHHHH
Q 044944 362 IMCCRGIPEIAMYCMWKD-KKTITSQIFALLIANMVIVTSIASA 404 (759)
Q Consensus 362 ~m~~kG~v~l~~~~~~~~-~~~i~~~~~~~~v~~~lv~t~i~~p 404 (759)
+-..-=++++.+.+.+++ .....++.-..+.+..++ +.+.+-
T Consensus 346 L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~-s~~~G~ 388 (423)
T PRK14853 346 LAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLI-AALLAS 388 (423)
T ss_pred HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHH
Confidence 666666788888888884 332333444444555555 444444
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1e-14 Score=148.39 Aligned_cols=347 Identities=12% Similarity=0.087 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHH
Q 044944 21 QMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIK 100 (759)
Q Consensus 21 ~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 100 (759)
.-+.+.+.+..--.+-+|+-+...+---+.|+++||++++..++.-.. +.......++.+-+..=.|.+++|+.-..+.
T Consensus 18 ~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wg-n~d~it~ei~RvvLcvqvfava~eLPr~Y~l 96 (467)
T KOG4505|consen 18 SGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWG-NKDYITYEISRVVLCVQVFAVAMELPRAYML 96 (467)
T ss_pred HhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcccc-CcchhhhhhhhhhHhHHHHHHHHhccHHHHH
Confidence 334455555555566677777777777789999999999987761111 1235566788888999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhcc---ccCChhHHHHH
Q 044944 101 HIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELN---MLNSELGRLAS 177 (759)
Q Consensus 101 ~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~---l~~s~~g~l~l 177 (759)
++|+..+.+-+.-++.-+++.+.+.|.+..... ...++.+++..++|++.....+..+-+ ....++..+..
T Consensus 97 ~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~ln------f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~ 170 (467)
T KOG4505|consen 97 EHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLN------FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence 999998887777777777777777777754332 367899999999999555555555433 34556667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC-----CC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHH
Q 044944 178 SAAMVSDILSWITCMILNGVSDAYNS-----NP--MKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFIS 250 (759)
Q Consensus 178 s~a~i~D~~~~~ll~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~ 250 (759)
+.+-.||..++.++-+.+-+..-+.. +| ...++.....+.+..++.++.|..+++-.++.--+ .|++..+
T Consensus 171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~ 247 (467)
T KOG4505|consen 171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIF 247 (467)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHH
Confidence 99999999999988777655432211 11 11122222223344455666666666655554332 6788889
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHH-HhHHhhhhhhhhHHHHHHHhcccccccccccc-----hh
Q 044944 251 IICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQL-VNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES-----ST 324 (759)
Q Consensus 251 ~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l-~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~-----~~ 324 (759)
-+++.+.|+.+.+.+|.+..+-.|.||.+++...-+..+. +.++..+...++.-.||++.|..++.+.++.. .|
T Consensus 248 ~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw 327 (467)
T KOG4505|consen 248 YVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW 327 (467)
T ss_pred HHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH
Confidence 9999999999999999999999999999999865554433 34566676778889999999999999877644 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHhhhcchhhHHHHhhhc
Q 044944 325 RKMELIMVMSYIGKFTGVILSSSFF--GISFIKASCLAFIMCCRGIPEIAMYCMWK 378 (759)
Q Consensus 325 ~~~~~i~~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~v~l~~~~~~~ 378 (759)
..+++-+...+.-|+.++++.-.+- =.+|||++++|. .+|.|.-++..+..+.
T Consensus 328 rlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 328 RLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 3333333344444554444432221 147999999999 7999988888777664
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.60 E-value=5.6e-14 Score=154.87 Aligned_cols=384 Identities=13% Similarity=0.064 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHHHHHcccC---CchhHHHHHHHHhcCcccccC----cC---C-CcCCCCchHHHHHHHHHHHHHHH
Q 044944 19 LLQMVVIFLSTRAIYFLLRPFH---QTTVMAQILGGAIIGPSILGD----DT---S-TLFPMRNRHILRTFAEFGMILHI 87 (759)
Q Consensus 19 ll~l~lil~~~~l~~~l~~rl~---~P~iv~~IlaGiilGP~~lg~----~~---~-~~fp~~~~~~l~~l~~lgl~~ll 87 (759)
++-..++++++.+..+++++-| +|.-+.-++-|+++|-..... .. . ..|.+ +.+-.+-+--+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence 3444455666778889998888 999999999999998543211 11 0 12221 123333455688
Q ss_pred HHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccc
Q 044944 88 FVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNM 167 (759)
Q Consensus 88 F~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l 167 (759)
|..|.+++.+.++|+......+++.+..++..+.....++++.... +..-.+..++++|+++|+|++..+..++.|++
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~-~~~~~f~d~L~fGaliSATDPVtvLaIfnel~- 188 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLL-IYDLSFKDCLAFGALISATDPVTVLAIFNELG- 188 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccc-cccccHHHHHHHhhHhcccCchHHHHHHHHhC-
Confidence 9999999999999999999999999887776544444444433221 22234688999999999999999999999998
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc
Q 044944 168 LNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMK--PLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQ 245 (759)
Q Consensus 168 ~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e 245 (759)
...++-.++-+++++||.++++++..+.........++.. .+..++.....-..++...+-+...+.|...-+ +...
T Consensus 189 vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~-~~~~ 267 (575)
T KOG1965|consen 189 VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR-RTPS 267 (575)
T ss_pred CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcH
Confidence 5677889999999999999999998888765544322211 122222221111111222222223333332222 1234
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC-----CchhHHHhHHhhhhhhhhHHHHHHHhcc-ccccccc
Q 044944 246 SHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGP-----PLGTQLVNKLDFFTSGFLIPVFCAMSGI-RWEMYLL 319 (759)
Q Consensus 246 ~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~-----~~~~~l~~kl~~~~~~~~~PlFF~~~G~-~~dl~~l 319 (759)
....+.+++....++++|.+|+++++..+..|+.+.+.. +..+.-.+.+-.+...+.--+-|.++|+ -++....
T Consensus 268 lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~ 347 (575)
T KOG1965|consen 268 LESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce
Confidence 567788888999999999999999999999999999742 2233334444444477778888999996 3343333
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhC----------CChHHHHHHHHHhhhcchhhHHHHhhhc-cc-----CcC
Q 044944 320 KESSTRKMELIMVMSYIGKFTGVILSSSFFG----------ISFIKASCLAFIMCCRGIPEIAMYCMWK-DK-----KTI 383 (759)
Q Consensus 320 ~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~----------~~~~~~~~lgl~m~~kG~v~l~~~~~~~-~~-----~~i 383 (759)
.......+....++.+++|..-.+-.+.+.+ +|.++-..+.|.=.-||.++++++..-. +. +.+
T Consensus 348 ~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i 427 (575)
T KOG1965|consen 348 VYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI 427 (575)
T ss_pred eeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence 2222223445555666777766554444433 3444455555543479999988876421 11 222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044944 384 TSQIFALLIANMVIVTSIASAVVGYLYD 411 (759)
Q Consensus 384 ~~~~~~~~v~~~lv~t~i~~plv~~l~~ 411 (759)
-.....++++.+++....+.|+++++-.
T Consensus 428 ~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 428 FTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred EEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 2233334444444445568899988764
No 19
>PRK11175 universal stress protein UspE; Provisional
Probab=99.57 E-value=1.6e-13 Score=147.67 Aligned_cols=273 Identities=11% Similarity=0.101 Sum_probs=161.6
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccc---cccccchhHHHHH-HHHHHHhc
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHT---QSVVASSTHLINA-FAQLERSY 508 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~---~~~~~~~~~i~~a-f~~~~~~~ 508 (759)
|||+|++..+.....++.+..+....+ .+++++|+++......+-........ +....+.++.++. .+.+.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 79 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQRNG--GKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYL--- 79 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHhcC--CCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 699999999998888888776654333 57888898754322111111000000 0000111222222 22221
Q ss_pred CCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCC
Q 044944 509 HGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIK 588 (759)
Q Consensus 509 ~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~ 588 (759)
..+++++...... .+.+++|++.|+++++||||+|.|++....+ ..+++..+++++++||||.+. ..+...
T Consensus 80 ~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~------~~~gs~~~~l~~~~~~pvlvv-~~~~~~ 150 (305)
T PRK11175 80 DAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLES------VIFTPTDWHLLRKCPCPVLMV-KDQDWP 150 (305)
T ss_pred hcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHh------hccChhHHHHHhcCCCCEEEe-cccccC
Confidence 2345665544433 5789999999999999999999987643322 256777889999999999775 332211
Q ss_pred CCCcccCCCcceEEEEeeccCcCh-------HHHHHHHHHHhhCC-CeEEEEEEeeeCCCCCCC-----CCCCCcchhhH
Q 044944 589 SIRPTFDFQLSYHIVMLFVGGADD-------REALAYSRLMVEHP-NISLTVVWFVSSDPDTSS-----GIETTDDRDLD 655 (759)
Q Consensus 589 ~~~~~~~~~~~~~i~~~f~GG~dd-------reAL~~a~rma~~~-~v~ltv~r~~~~~~~~~~-----~~~~~~~~~~d 655 (759)
...+|+++..|++++ +.|+++|.++|+.. +++++++|+.+....... ...++.++...
T Consensus 151 ---------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (305)
T PRK11175 151 ---------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIR 221 (305)
T ss_pred ---------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHH
Confidence 134899999998753 67999999999987 999999999854321000 00011111111
Q ss_pred H---HHHHHhhhhcCCCCeEEEEEEeCCh---hhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhh
Q 044944 656 N---HAFDEFKDSVVTKKITLRVEIVKDG---IGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDT 729 (759)
Q Consensus 656 ~---~~~~~~~~~~~~~~v~~~e~~v~~~---~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~ 729 (759)
+ +.++++.++++.. ..+..+..| .++.+..++ .+.||+|+|.++...- +.--+|-..+-
T Consensus 222 ~~~~~~l~~~~~~~~~~---~~~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~~~~~~----------~~~llGS~a~~ 286 (305)
T PRK11175 222 GQHLLAMKALRQKFGID---EEQTHVEEGLPEEVIPDLAEH--LDAELVILGTVGRTGL----------SAAFLGNTAEH 286 (305)
T ss_pred HHHHHHHHHHHHHhCCC---hhheeeccCCHHHHHHHHHHH--hCCCEEEECCCccCCC----------cceeecchHHH
Confidence 1 2344544443111 111122222 222233333 4799999999865321 23347888888
Q ss_pred hhcCCCCCceEEEee
Q 044944 730 LVNSSEEFSVLVVQQ 744 (759)
Q Consensus 730 las~d~~~SvLvvqq 744 (759)
++.. ..|+||||..
T Consensus 287 v~~~-~~~pVLvv~~ 300 (305)
T PRK11175 287 VIDH-LNCDLLAIKP 300 (305)
T ss_pred HHhc-CCCCEEEEcC
Confidence 8854 6779999953
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.50 E-value=6.9e-12 Score=133.85 Aligned_cols=271 Identities=14% Similarity=0.165 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 044944 74 ILRTFAEFGMILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASV 147 (759)
Q Consensus 74 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig 147 (759)
..+.+.+.-+.++.|.+|+|+..+.+. ++.|++ ..-++.++++|.++-..+.. +.. . ..--+|
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~----~-----~~~GW~ 120 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDP----I-----TREGWA 120 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCC----c-----ccCccc
Confidence 445566666788999999999877663 333333 34566778888765332211 110 0 000111
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044944 148 AANSMTSLVVVTSVLKEL-NMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLL 226 (759)
Q Consensus 148 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (759)
+- ..|+.+-..-++.=+ +..+..+....++-|++||+.++++.+++.. +. ....+.......+.
T Consensus 121 IP-~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~---i~~~~L~~a~~~~~------- 185 (373)
T TIGR00773 121 IP-AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----ND---LSMAALLVAAVAIA------- 185 (373)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CC---CCHHHHHHHHHHHH-------
Confidence 11 112222222222222 3356667788899999999999988777662 11 12223322222111
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc----hhHHHhHHhhhhhhhh
Q 044944 227 RPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPL----GTQLVNKLDFFTSGFL 302 (759)
Q Consensus 227 r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~----~~~l~~kl~~~~~~~~ 302 (759)
..++.+|. .+++...+..+..++..+ + ...|+|+.+|++++|+++|...+. .+++++.+++.+..++
T Consensus 186 ---~l~~~~~~----~v~~~~~y~~lgvllW~~-~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~li 256 (373)
T TIGR00773 186 ---VLAVLNRC----GVRRLGPYMLVGVILWFA-V-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLI 256 (373)
T ss_pred ---HHHHHHHc----CCchhhHHHHHHHHHHHH-H-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHH
Confidence 11223332 134444444444333333 3 799999999999999999985433 3566777777799999
Q ss_pred HHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHhhhcchhhH
Q 044944 303 IPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAFIMCCRGIPEI 371 (759)
Q Consensus 303 ~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~l 371 (759)
+|+| |+..|.++|...+..........+++..+++|.+|++..++.. +++|++-.-+|++-..-=++++
T Consensus 257 lPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSl 336 (373)
T TIGR00773 257 LPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSI 336 (373)
T ss_pred HHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999987655333333467788888999999998887754 5788998888886555567788
Q ss_pred HHHhhhcc
Q 044944 372 AMYCMWKD 379 (759)
Q Consensus 372 ~~~~~~~~ 379 (759)
.+.+.+++
T Consensus 337 fI~~LAf~ 344 (373)
T TIGR00773 337 FIASLAFG 344 (373)
T ss_pred HHHHHhcC
Confidence 88888884
No 21
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.17 E-value=3.1e-10 Score=105.69 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=98.3
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCCce
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGNI 512 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 512 (759)
|||+|+++.++...+++.+..+... .+.+++++|+++......+ +.. .......++.++.+....+. ..+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~--~g~ 70 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQL--EVNVQRARKLLRQAERIAAS--LGV 70 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chh--HHHHHHHHHHHHHHHHHhhh--cCC
Confidence 6999999999999999999998865 3579999999997644321 100 01223345666666655443 346
Q ss_pred EEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 513 VVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 513 ~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
.+++....+ .+..++||+.|++.++|+|++|.|+++... +..+++++.+|++++||||.|+
T Consensus 71 ~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~------~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 71 PVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLR------DRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred ceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcc------ceecCchHHHHHhcCCCCEEEe
Confidence 677777666 579999999999999999999999876432 2357888999999999999874
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.13 E-value=1.8e-08 Score=107.95 Aligned_cols=271 Identities=13% Similarity=0.140 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 044944 74 ILRTFAEFGMILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASV 147 (759)
Q Consensus 74 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig 147 (759)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-+.+.. +... ..--+|
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~---------~~~GWg 127 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPE---------TLRGWA 127 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc---------ccCccc
Confidence 345556666778899999999877653 233332 34566778888765332211 1100 001111
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044944 148 AANSMTSLVVVTSVLKEL-NMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLL 226 (759)
Q Consensus 148 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (759)
+- ..|+.+-..-++.=+ +..+..+....++-|++||+.++++.+++.. ++ ....+......++.+ .
T Consensus 128 IP-mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~---i~~~~L~~a~~~~~~--l--- 194 (389)
T PRK09560 128 IP-AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SD---LSLPALALAAIAIAV--L--- 194 (389)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CC---CCHHHHHHHHHHHHH--H---
Confidence 11 123333333333322 2356667788899999999999988777662 11 223333333221111 1
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc------hhHHHhHHhhhhhh
Q 044944 227 RPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPL------GTQLVNKLDFFTSG 300 (759)
Q Consensus 227 r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~------~~~l~~kl~~~~~~ 300 (759)
++.+|. .++....+..+.+++..+. ...|+|+.++..++|+++|..++. .+++++++++.+..
T Consensus 195 -----~~ln~~----~v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~ 263 (389)
T PRK09560 195 -----FLLNRL----GVTKLTPYLIVGAILWFAV--LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAF 263 (389)
T ss_pred -----HHHHHc----CCccchHHHHHHHHHHHHH--HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhh
Confidence 222332 1334455555554443333 478999999999999999974322 35789999999998
Q ss_pred hhHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHhhhcchh
Q 044944 301 FLIPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAFIMCCRGIP 369 (759)
Q Consensus 301 ~~~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v 369 (759)
+.+|+| |...|..++-..+....-.....+++..++||.+|.+..++.. +++|++-..+|++-..-=++
T Consensus 264 ~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTm 343 (389)
T PRK09560 264 AILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTM 343 (389)
T ss_pred hhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 7888888843223221122355666777889999988877653 57888888888865555677
Q ss_pred hHHHHhhhcc
Q 044944 370 EIAMYCMWKD 379 (759)
Q Consensus 370 ~l~~~~~~~~ 379 (759)
++.+++.++.
T Consensus 344 SLFIa~LAF~ 353 (389)
T PRK09560 344 SLFIGSLAFG 353 (389)
T ss_pred HHHHHHhhcC
Confidence 8888888883
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.10 E-value=2.6e-08 Score=106.54 Aligned_cols=271 Identities=15% Similarity=0.180 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 044944 74 ILRTFAEFGMILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASV 147 (759)
Q Consensus 74 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig 147 (759)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.. +.. . ..--+|
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~----~-----~~~GWa 127 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADP----V-----TREGWA 127 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCC----c-----ccCccc
Confidence 445556666778899999999887663 233332 34566778888765332211 110 0 000111
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044944 148 AANSMTSLVVVTSVLKEL-NMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLL 226 (759)
Q Consensus 148 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (759)
+- ..|+.+-..-++.=+ +..+..+....++-|++||+.++++.+++.. +. ....+.......+ ...
T Consensus 128 IP-~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~---i~~~~L~~a~~~~--~~l--- 194 (388)
T PRK09561 128 IP-AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SD---LSMVSLGVAAVAI--AVL--- 194 (388)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CC---ccHHHHHHHHHHH--HHH---
Confidence 11 122333333333222 2356667788899999999999988777662 11 1222222222111 111
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc----hhHHHhHHhhhhhhhh
Q 044944 227 RPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPL----GTQLVNKLDFFTSGFL 302 (759)
Q Consensus 227 r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~----~~~l~~kl~~~~~~~~ 302 (759)
++.+|. .++....+.++..++..+ ....|+|+.++..+.|+++|...+. .+++++++++.+..+.
T Consensus 195 -----~~ln~~----~v~~~~~Y~~~G~~lW~~--~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~I 263 (388)
T PRK09561 195 -----AVLNLC----GVRRTSVYILVGVVLWVA--VLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLI 263 (388)
T ss_pred -----HHHHHc----CCccchHHHHHHHHHHHH--HHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhee
Confidence 222332 133445555555444333 3478999999999999999974221 3678999999999999
Q ss_pred HHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHhhhcchhhH
Q 044944 303 IPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAFIMCCRGIPEI 371 (759)
Q Consensus 303 ~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~l 371 (759)
+|+| |+..|..++-..+....-.....+++..++||.+|.+..++.. +++|++-..+|++-..-=++++
T Consensus 264 lPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 343 (388)
T PRK09561 264 LPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSI 343 (388)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 7888888832222221122345666777889999988877653 5788888888886555557788
Q ss_pred HHHhhhcc
Q 044944 372 AMYCMWKD 379 (759)
Q Consensus 372 ~~~~~~~~ 379 (759)
.+.+.+++
T Consensus 344 FIa~LAF~ 351 (388)
T PRK09561 344 FIASLAFG 351 (388)
T ss_pred HHHHHhcC
Confidence 88888884
No 24
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.09 E-value=2.9e-08 Score=107.99 Aligned_cols=295 Identities=14% Similarity=0.149 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHH
Q 044944 73 HILRTFAEFGMILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAAS 146 (759)
Q Consensus 73 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~i 146 (759)
...+.+.+.-+.+|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++-..+. ...+ . .--+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n----~~~~--~------~~GW 134 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLN----ADTP--S------QHGF 134 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhhee----cCCC--c------cCcc
Confidence 3445666677888999999999877653 233332 3456677888876532221 1110 0 1111
Q ss_pred HHHHhhccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 044944 147 VAANSMTSLVVVTSVLKELN-MLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFL 225 (759)
Q Consensus 147 g~~ls~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 225 (759)
|+- ..|+.+...-++.=+| ..++.+....++-|++||+.++++.+++.. +. ....+...+..++.+ .
T Consensus 135 gIP-mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~---i~~~~L~~a~~~~~~--l-- 202 (438)
T PRK14856 135 GIP-MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TN---LKFAWLLGALGVVLV--L-- 202 (438)
T ss_pred ccc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CC---CcHHHHHHHHHHHHH--H--
Confidence 111 1233333333333232 245677788899999999999988777662 11 233333333322211 1
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc-------------------
Q 044944 226 LRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPL------------------- 286 (759)
Q Consensus 226 ~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~------------------- 286 (759)
++.+|. .++....+.++.+++..+ ....|+|+.++..++|+++|-.++.
T Consensus 203 ------~~ln~~----~v~~~~~Y~~~G~~lW~~--~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~ 270 (438)
T PRK14856 203 ------AVLNRL----NVRSLIPYLLLGVLLWFC--VHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSS 270 (438)
T ss_pred ------HHHHHc----CCccccHHHHHHHHHHHH--HHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccc
Confidence 222332 133344555555444333 3478999999999999999964322
Q ss_pred -------------------------hhHHHhHHhhhhhhhhHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHH
Q 044944 287 -------------------------GTQLVNKLDFFTSGFLIPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFT 340 (759)
Q Consensus 287 -------------------------~~~l~~kl~~~~~~~~~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i 340 (759)
.+++++.+++.+..+.+|+| |...|..++...... .-.....+++..++||.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~-~~pv~lGI~~GLvvGK~l 349 (438)
T PRK14856 271 GALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE-VDKVLLGVILGLCLGKPL 349 (438)
T ss_pred ccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc-cCcHHHHHHHHHHhcchH
Confidence 14577788888999999999 889999887542211 122355666777889999
Q ss_pred HHHHHHHhh----------CCChHHHHHHHHHhhhcchhhHHHHhhhccc--CcCchhHHHHHHHHHHHHHHHHHHH
Q 044944 341 GVILSSSFF----------GISFIKASCLAFIMCCRGIPEIAMYCMWKDK--KTITSQIFALLIANMVIVTSIASAV 405 (759)
Q Consensus 341 ~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~--~~i~~~~~~~~v~~~lv~t~i~~pl 405 (759)
|.+..++.. +++|++-.-+|++-..-=++++.+.+.+++. ....++.-..+.+..++ +.+.+-+
T Consensus 350 GI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~l-sai~G~~ 425 (438)
T PRK14856 350 GIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLI-SGIIGAL 425 (438)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 988877653 5788888888886555567788888888843 32334444444555555 4444443
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.06 E-value=9e-08 Score=102.11 Aligned_cols=289 Identities=15% Similarity=0.156 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 044944 74 ILRTFAEFGMILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASV 147 (759)
Q Consensus 74 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig 147 (759)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.. +.. ..--+|
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~----------~~~GW~ 123 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIK----------VINGWA 123 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCc----------ccCccc
Confidence 345556666778899999999877552 233333 34567788888765433321 110 001111
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044944 148 AANSMTSLVVVTSVLKEL-NMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLL 226 (759)
Q Consensus 148 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (759)
+- ..|+.+...-++.=+ +..+..+.-..++-|++||+.++++.+++.. ++ ....+.......+ ...++
T Consensus 124 IP-~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~---i~~~~L~~A~~~~--~~l~~- 192 (383)
T PRK14854 124 IP-SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----KS---LSLLSLSLGTLFI--LAMII- 192 (383)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CC---ccHHHHHHHHHHH--HHHHH-
Confidence 11 112322222222222 2356667677888899999999888777662 11 1222222221111 11111
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCC----chhHHHhHHhhhhhhhh
Q 044944 227 RPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPP----LGTQLVNKLDFFTSGFL 302 (759)
Q Consensus 227 r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~----~~~~l~~kl~~~~~~~~ 302 (759)
+.|+. +++....+.++..++.. ....-|+|+.++..+.|+++|...+ -.+++++++++.+..+.
T Consensus 193 ------~nr~~----~v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~I 260 (383)
T PRK14854 193 ------CNRIF----KINRSSVYVVLGFFAWF--CTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFI 260 (383)
T ss_pred ------HHHhc----CCceehHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhh
Confidence 12211 12334445554444333 3347899999999999999997421 13578899999999999
Q ss_pred HHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHhhhcchhhH
Q 044944 303 IPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAFIMCCRGIPEI 371 (759)
Q Consensus 303 ~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~l 371 (759)
+|+| |+..|..++-..+....-.....+++..++||.+|.+..++.. +++|++-..+|++-..-=++++
T Consensus 261 lPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 340 (383)
T PRK14854 261 LPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSL 340 (383)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 8888888842222221223455666777889999988877653 5788998888886566667888
Q ss_pred HHHhhhcccCcCchhHHHHHHHHHHH
Q 044944 372 AMYCMWKDKKTITSQIFALLIANMVI 397 (759)
Q Consensus 372 ~~~~~~~~~~~i~~~~~~~~v~~~lv 397 (759)
.+++.+++.....++.--.+.+..++
T Consensus 341 FIa~LAF~~~~~~~~aKigIL~gS~~ 366 (383)
T PRK14854 341 FIGVLAFNDTHLLNAIKIGVVVGSVL 366 (383)
T ss_pred HHHHhhCCCcchhhHHHHHHHHHHHH
Confidence 88888885322223333334444444
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.01 E-value=8.8e-08 Score=103.82 Aligned_cols=290 Identities=13% Similarity=0.115 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 044944 74 ILRTFAEFGMILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASV 147 (759)
Q Consensus 74 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig 147 (759)
..+.+.+--+.+|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++-..+. ...+ . .--+|
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n----~~~~--~------~~GWg 130 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALN----AGGP--G------ASGWG 130 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheee----cCCC--c------cCccc
Confidence 445556666778899999999877663 233333 3456677788876532211 1110 0 11111
Q ss_pred HHHhhccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044944 148 AANSMTSLVVVTSVLKELN-MLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLL 226 (759)
Q Consensus 148 ~~ls~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (759)
+- ..|+.+...-++.=+| .....+....++-|++||+.++++.+++.. +. ....+...+.+++. +
T Consensus 131 IP-mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~---i~~~~L~~a~~~~~-~----- 196 (423)
T PRK14855 131 VP-MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SG---LNLLALLLAALTWA-L----- 196 (423)
T ss_pred cc-cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CC---CCHHHHHHHHHHHH-H-----
Confidence 11 2233333333333333 245567788899999999999888777662 11 12223322222111 1
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCC-c-------------------
Q 044944 227 RPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPP-L------------------- 286 (759)
Q Consensus 227 r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~-~------------------- 286 (759)
.++.+|. .++....++.+.+++..+. ...|+|+.++..++|+++|..++ .
T Consensus 197 ----l~~ln~~----~v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 197 ----ALLAGRL----GVTSLKIYAVLGALLWFFV--LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred ----HHHHHHc----CCccccHHHHHHHHHHHHH--HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 1222332 1334445555554443333 47899999999999999997411 1
Q ss_pred -----------------hhHHHhHHhhhhhhhhHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 044944 287 -----------------GTQLVNKLDFFTSGFLIPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSF 348 (759)
Q Consensus 287 -----------------~~~l~~kl~~~~~~~~~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~ 348 (759)
.+++++++++.+..+.+|+| |+..|..++-..+. .....+++..++||.+|.+..++.
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~----pv~lGI~~GLvvGK~lGI~~~s~l 342 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG----TVSLGVFLGLLLGKPLGVVGGAWL 342 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC----cHHHHHHHHHHhcchHHHHHHHHH
Confidence 24678888899999999999 88888888433221 234556667788999998887765
Q ss_pred h----------CCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHH
Q 044944 349 F----------GISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASA 404 (759)
Q Consensus 349 ~----------~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~p 404 (759)
. +++|++-.-+|++-..-=++++.+++.+++....-++.-..+.+..++ +.+.+-
T Consensus 343 avkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~-aai~G~ 407 (423)
T PRK14855 343 AVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVL-AALLGA 407 (423)
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHH-HHHHHH
Confidence 3 578899888888656666788888888885432334444444444544 333433
No 27
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.87 E-value=7.1e-07 Score=91.73 Aligned_cols=263 Identities=14% Similarity=0.175 Sum_probs=159.4
Q ss_pred HHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHH
Q 044944 83 MILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLV 156 (759)
Q Consensus 83 l~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 156 (759)
+..+.+.+|+|+..+.+. ++++++ ..-++.+++.|..+- ..+....+ . ..--+ ++-+.|+.+
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy----~~~n~~~p--~-----~~~GW-aIP~ATDiA 138 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIY----LALNAGDP--A-----TLEGW-AIPMATDIA 138 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHh----heeecCCh--h-----hhcCc-CcccHHHHH
Confidence 456777899999888774 344433 234556666665442 11211110 0 00000 111233433
Q ss_pred HHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044944 157 VVTSVLKEL-NMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVS 235 (759)
Q Consensus 157 vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~ 235 (759)
....+++=+ +...+.+.-..++-|++||+-++++.++... +. ....+...+.+. +++.. .+ .+
T Consensus 139 FAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~---Ls~~al~~a~~~-i~vL~-----~l---N~ 202 (390)
T COG3004 139 FALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TD---LSMAALGIAALA-IAVLA-----VL---NR 202 (390)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CC---ccHHHHHHHHHH-HHHHH-----HH---HH
Confidence 333343333 3467778888999999999999888777663 11 112222222111 11111 11 22
Q ss_pred hcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC----CchhHHHhHHhhhhhhhhHHHH-HHHh
Q 044944 236 KTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGP----PLGTQLVNKLDFFTSGFLIPVF-CAMS 310 (759)
Q Consensus 236 ~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~----~~~~~l~~kl~~~~~~~~~PlF-F~~~ 310 (759)
. .++....++++..++..+.+ .-|+|..++..+.|+.+|-.. +--+++++.+.+.+..+.+|+| |...
T Consensus 203 ~-----~v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNA 275 (390)
T COG3004 203 L-----GVRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANA 275 (390)
T ss_pred h-----CchhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccC
Confidence 1 12334455556665555544 679999999999999999543 2346788899999999999999 8888
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHhhhcchhhHHHHhhhccc
Q 044944 311 GIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAFIMCCRGIPEIAMYCMWKDK 380 (759)
Q Consensus 311 G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~ 380 (759)
|..++=-.+....-.....+++..++||.+|.+..++.. +.+|++-...+++-...=++++.+...+++.
T Consensus 276 Gvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 276 GVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred CcccccccccccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 887763223222233456677788899999998887754 5788888888886555567778888887755
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.84 E-value=2.2e-08 Score=107.07 Aligned_cols=289 Identities=15% Similarity=0.198 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHH---hhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHH
Q 044944 73 HILRTFAEFGMILHIFVLGVQIDLGLIK---HIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAAS 146 (759)
Q Consensus 73 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~i 146 (759)
...+.+.+-=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+ ...++ ...--+
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~~------n~~~~-----~~~~GW 122 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLAF------NAGGP-----EAAHGW 122 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGG--------SST-----THHHHT
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhee------ecCCC-----CcCceE
Confidence 3455666666788999999999877663 233433 344566777776542211 11100 011111
Q ss_pred HHHHhhccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 044944 147 VAANSMTSLVVVTSVLKELN-MLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFL 225 (759)
Q Consensus 147 g~~ls~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 225 (759)
|+ =..|+.+....++.=++ ..+..+....++-|++||+.++++.+++.. +. ....+.......+ ...
T Consensus 123 ~I-P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~---i~~~~L~~a~~~~--~~l-- 190 (378)
T PF06965_consen 123 AI-PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DG---ISLLWLLLAAAAL--LLL-- 190 (378)
T ss_dssp SS-SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------HHHHHHHHHHH--HHH--
T ss_pred Ee-cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CC---CCHHHHHHHHHHH--HHH--
Confidence 11 12344444444444333 245567788899999999999988887763 11 1222222222111 111
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCch--------hHHHhHHhhh
Q 044944 226 LRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLG--------TQLVNKLDFF 297 (759)
Q Consensus 226 ~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~--------~~l~~kl~~~ 297 (759)
|..+|.. ++....+..+.+++ =+.....|+|+.++..+.|+++|..++.+ +++++++++.
T Consensus 191 ------~~l~r~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~ 258 (378)
T PF06965_consen 191 ------FVLNRLG----VRSLWPYLLLGILL--WYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPW 258 (378)
T ss_dssp ------HHHHHTT-------THHHHHHHHHH--HHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHH
T ss_pred ------HHHHHCC----CceehHHHHHHHHH--HHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhh
Confidence 2223321 23344444444322 23335789999999999999999865442 4889999999
Q ss_pred hhhhhHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHhhhc
Q 044944 298 TSGFLIPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAFIMCCR 366 (759)
Q Consensus 298 ~~~~~~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~k 366 (759)
+..+.+|+| |+..|..++-..+....-.....+++..++||.+|.+..++.. +++|++-..+|++-..-
T Consensus 259 v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIG 338 (378)
T PF06965_consen 259 VAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIG 338 (378)
T ss_dssp HHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--
T ss_pred hhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999 8999998886554322122233455666789999988776643 45677767777755555
Q ss_pred chhhHHHHhhhcccCcCchhHHHHHHHHHH
Q 044944 367 GIPEIAMYCMWKDKKTITSQIFALLIANMV 396 (759)
Q Consensus 367 G~v~l~~~~~~~~~~~i~~~~~~~~v~~~l 396 (759)
=++++.+.+.+++.....++.-..+.+..+
T Consensus 339 FTmSLFIa~LAF~~~~~~~~aK~gIL~~S~ 368 (378)
T PF06965_consen 339 FTMSLFIAGLAFDDPALQNAAKLGILIGSL 368 (378)
T ss_dssp HHHHHHHHHHHSTT-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHHHHHH
Confidence 577888888888764444444444444333
No 29
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.76 E-value=7.3e-09 Score=114.30 Aligned_cols=370 Identities=13% Similarity=0.105 Sum_probs=220.2
Q ss_pred HHHHHHcccC--CchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHH
Q 044944 31 AIYFLLRPFH--QTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVA 108 (759)
Q Consensus 31 l~~~l~~rl~--~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ 108 (759)
+..-+..+++ .|.-...|+.|+++|-.+.+.-...-+.-+ .+ .+=-.-+--++|-+|.-|.-+.+..+....+.
T Consensus 56 i~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~-s~---vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILl 131 (670)
T KOG1966|consen 56 IVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLE-SD---VFFLYLLPPIVLDAGYFMPNRAFFENLGTILL 131 (670)
T ss_pred hcccccccccccCchhHHHHHHHHHHHHHHHhhhcccccccc-cc---chhhhhcCHHHhcccccCccHHHHhccchhhh
Confidence 3333334444 688888888899888655333211000000 01 11011123367899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-cccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHH
Q 044944 109 IGFFGCLIPLIFGMSSFRLIQQQKT-RFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDILS 187 (759)
Q Consensus 109 ia~~~~~~p~~~~~~~~~~l~~~~~-~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~ 187 (759)
.|..|.+.-.+...+.-|.+..... ++. ......++.|...|..++..+..+.+|.. .|.-+=-++.+.+++||.+.
T Consensus 132 fAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLlNDaVT 209 (670)
T KOG1966|consen 132 FAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLLNDAVT 209 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhhcCceE
Confidence 9999888865544333333322111 111 22456788999999999999999999988 56666678889999999999
Q ss_pred HHHHHHHHHHhhcCCCC--Cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHH
Q 044944 188 WITCMILNGVSDAYNSN--PMKP---LYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVG 262 (759)
Q Consensus 188 ~~ll~v~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~ 262 (759)
++++-++..+..-++.+ .... ..++....+..+.++.+...+.....|.+.+ ++=..-++++.+...++..+
T Consensus 210 VVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pYlaYL~a 286 (670)
T KOG1966|consen 210 VVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPYLAYLTA 286 (670)
T ss_pred EehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHHHHHHHH
Confidence 99987776654432211 1111 1111111111112222223333333444332 33344577888889999999
Q ss_pred HHhchhhhHHHHHHHhhcCCC-----CCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 044944 263 TCFGQGSFLGCFVFGLCLPDG-----PPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIG 337 (759)
Q Consensus 263 ~~~G~~~~lGafvaGl~i~~~-----~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~ 337 (759)
|.++++++++-.+.|+++... .+....-.+.+-...+..--++-|.+.|..+- +.....+|+.+.+-++...+.
T Consensus 287 Em~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v-~~~h~wd~~Fi~~T~~fc~~~ 365 (670)
T KOG1966|consen 287 EMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTV-SSNHHWDFAFICLTLVFCLIY 365 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhc-CCcceeehhhhhhHHHHHHHH
Confidence 999999999999999999863 11122222333333455666778888888763 222222455556666667778
Q ss_pred HHHHHHHHHHhh------CCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCc-----hhHHHHHHHHHHHHHHHHHHHH
Q 044944 338 KFTGVILSSSFF------GISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTIT-----SQIFALLIANMVIVTSIASAVV 406 (759)
Q Consensus 338 K~i~~~l~~~~~------~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~-----~~~~~~~v~~~lv~t~i~~plv 406 (759)
|.+++...+++. +++..|-+.++.. +-||.+...+...--...+-. ..+..++.+.+.+..+.+-|++
T Consensus 366 R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQGiTIkplv 444 (670)
T KOG1966|consen 366 RAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQGITIKPLV 444 (670)
T ss_pred HHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeeecccchHHHH
Confidence 999887777765 4566776666553 566665544332211122222 2233344455555555678999
Q ss_pred HHhcC
Q 044944 407 GYLYD 411 (759)
Q Consensus 407 ~~l~~ 411 (759)
+|+--
T Consensus 445 k~L~V 449 (670)
T KOG1966|consen 445 KFLKV 449 (670)
T ss_pred HHHcc
Confidence 99753
No 30
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.51 E-value=1e-06 Score=83.74 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=87.4
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCccccccc---ccc-cccccccchhHHHHHHHHHHHhc
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKP---YHQ-HTQSVVASSTHLINAFAQLERSY 508 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~---~~~-~~~~~~~~~~~i~~af~~~~~~~ 508 (759)
+||+|++..++....++.+-.+.... ...++++|+++..... +.... ... ..+......++.++.+....+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~--~~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 75 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK--GQTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-- 75 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC--CCcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 48999999999999999987765543 4689999998754221 10000 000 000111122333433332221
Q ss_pred CCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhH-HHHHhhhhcCC--cceEEEeeCC
Q 044944 509 HGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIR-ALNGNILDKAP--CSVGVLVQRG 585 (759)
Q Consensus 509 ~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~-~~n~~vl~~Ap--CsVgIlvdrg 585 (759)
...+.++...... .+..+.|++.|++.++|+|+||-|++...... .++ ++-++|+++|| |||-| |.+|
T Consensus 76 ~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~------~~gssva~~Vi~~a~~~c~Vlv-v~~~ 146 (146)
T cd01989 76 RKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMK------FKKSDVASSVLKEAPDFCTVYV-VSKG 146 (146)
T ss_pred hcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeec------ccCCchhHHHHhcCCCCceEEE-EeCc
Confidence 1335555544433 47899999999999999999999887543221 344 48899999999 99966 5554
No 31
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.44 E-value=1.3e-06 Score=80.43 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=86.1
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCCce
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGNI 512 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 512 (759)
|||+|++..+....+++.+..+.... +..++++|+++-... + ...+.++.++.+++..+.. .+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~--~-----------~~~~~~~~l~~~~~~~~~~--~~ 63 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL--KAPWYVVYVETPRLN--R-----------LSEAERRRLAEALRLAEEL--GA 63 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh--CCCEEEEEEecCccc--c-----------CCHHHHHHHHHHHHHHHHc--CC
Confidence 68999999999999999988776543 468999999763211 0 0112244555555444332 23
Q ss_pred EEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcC-CcceEEE
Q 044944 513 VVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKA-PCSVGVL 581 (759)
Q Consensus 513 ~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~A-pCsVgIl 581 (759)
. +.+..+ .+..+.|++.|++.++|+|++|.|++..... ..++++.++|+++| ||+|-|.
T Consensus 64 ~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~------~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 64 E--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRE------LFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred E--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHH------HhcccHHHHHHHhCCCCeEEEe
Confidence 2 333334 6788999999999999999999998754322 25778899999999 9998763
No 32
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.43 E-value=3.5e-06 Score=78.16 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=80.0
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc--CCCCeEEEEEEe
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV--VTKKITLRVEIV 678 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~v~~~e~~v 678 (759)
||+++..|.++++.+|++|.++|+.++.+++++|+.+..+.... ...+.+++..++.++++.... .+-.+.+....-
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP-SQLEVNVQRARKLLRQAERIAASLGVPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc-chhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEec
Confidence 58999999999999999999999999999999999975321110 001111222334444444332 112233322221
Q ss_pred CC-hhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 679 KD-GIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 679 ~~-~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
.+ ..++.+..++ .++||+|+|++++.. | ...-+|..-+-+... ..|+||||+
T Consensus 80 ~~~~~~I~~~a~~--~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~-~~~pvlvv~ 132 (132)
T cd01988 80 HDIASGILRTAKE--RQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES-APCDVAVVK 132 (132)
T ss_pred CCHHHHHHHHHHh--cCCCEEEEecCCCCC---------c-cceecCchHHHHHhc-CCCCEEEeC
Confidence 12 2333333332 469999999997532 1 345578888888753 667999985
No 33
>PRK15005 universal stress protein F; Provisional
Probab=98.37 E-value=4.3e-06 Score=79.19 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=79.5
Q ss_pred eeeeeecCCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhc-C
Q 044944 433 RILVCINKEEN--MNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSY-H 509 (759)
Q Consensus 433 riL~cv~~~~~--~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~ 509 (759)
+||+|++..++ ....++.+..+... ...+++++|+++.......................++..+.++++.+.. .
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 68999998887 35566665555433 2368999999975322111100000000000011122223333333221 1
Q ss_pred CceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 510 GNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 510 ~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
..+.++..... .+-.+.|++.|++.++|||++|-|+. ... +..++++..+|++++||||.|.
T Consensus 82 ~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~------~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 82 PTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRP-DIT------TYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC-Cch------heeecchHHHHHHhCCCCEEEe
Confidence 22344444433 47789999999999999999998732 221 2357788999999999999763
No 34
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.35 E-value=4.8e-06 Score=79.07 Aligned_cols=131 Identities=8% Similarity=0.126 Sum_probs=80.2
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCC-----C---CcchhhHHHHHHHhhhhcCCCCeE
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIE-----T---TDDRDLDNHAFDEFKDSVVTKKIT 672 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~-----~---~~~~~~d~~~~~~~~~~~~~~~v~ 672 (759)
+|++++.|++..+.|+.+|.++++.++.+++++|++++......... . +..++..++.++++........+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQ 80 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 48899999999999999999999999999999999865321110000 0 011122234555554433223344
Q ss_pred EEEEEeC--Chh-hHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccc-hhhhhhhcCCCC--CceEEEee
Q 044944 673 LRVEIVK--DGI-GTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELG-IIGDTLVNSSEE--FSVLVVQQ 744 (759)
Q Consensus 673 ~~e~~v~--~~~-e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~--~SvLvvqq 744 (759)
++..++. +.. ++++..++ .+.||+|+|+++... |. .--+| -+.+.+.-. .. |+|||||.
T Consensus 81 ~~~~~~~g~~~~~~I~~~a~~--~~~dlIV~Gs~g~~~---------l~-~~~~gssva~~Vi~~-a~~~c~Vlvv~~ 145 (146)
T cd01989 81 CEDVVLEDDDVAKAIVEYVAD--HGITKLVMGASSDNH---------FS-MKFKKSDVASSVLKE-APDFCTVYVVSK 145 (146)
T ss_pred EEEEEEeCCcHHHHHHHHHHH--cCCCEEEEeccCCCc---------ee-ecccCCchhHHHHhc-CCCCceEEEEeC
Confidence 5444443 222 23333332 368999999987531 11 22355 688888754 55 69999984
No 35
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.34 E-value=8.5e-07 Score=82.33 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=84.3
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHH---HHHHhcC
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFA---QLERSYH 509 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~~~~ 509 (759)
|||+|+++.++...+++.+..+... +...++++|+.+.......-...... .....+......+ ......
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 76 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEE----SEEEAEEEEQARQAEAEEAEAE- 76 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccccccccc----cccccchhhhhhhHHHHHHhhh-
Confidence 7999999999999888888776543 34789999999876543211110000 0000000000000 111111
Q ss_pred CceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 510 GNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 510 ~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
. .........+ .+..+.|++.+++.++|+||+|.|++....+ ..++++.+++++++||||.|+
T Consensus 77 ~-~~~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~------~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 77 G-GIVIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLER------LLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp T-TSEEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTT------SSSHHHHHHHHHHTSSEEEEE
T ss_pred c-cceeEEEEEe--eccchhhhhccccccceeEEEeccCCCCccC------CCcCCHHHHHHHcCCCCEEEe
Confidence 2 2223333334 5899999999999999999999988543322 258899999999999999774
No 36
>PRK15456 universal stress protein UspG; Provisional
Probab=98.34 E-value=3.3e-06 Score=79.91 Aligned_cols=135 Identities=10% Similarity=0.082 Sum_probs=83.0
Q ss_pred eeeeeecCC--CChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhc-C
Q 044944 433 RILVCINKE--ENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSY-H 509 (759)
Q Consensus 433 riL~cv~~~--~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~ 509 (759)
|||+|++.. ++....++.+..+... . ..++++|+++..... ..........+......++.-+.++.+.+.. .
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 699999987 4777788877766543 2 379999998754211 1000000000000011122222333333221 1
Q ss_pred CceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 510 GNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 510 ~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
....+++..... +..++|++.|++.++||||||.|++. ... ..++++.++|+++|||||.|.
T Consensus 80 ~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~------~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 80 DPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-IST------HLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccc------eecCccHHHHHHcCCCCEEEe
Confidence 345666555444 78999999999999999999998753 221 257888999999999999763
No 37
>PRK15005 universal stress protein F; Provisional
Probab=98.25 E-value=1e-05 Score=76.60 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred eEEEEeeccCcC--hHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCC-----CCC---CcchhhHHHHHHHhhhhcCCC
Q 044944 600 YHIVMLFVGGAD--DREALAYSRLMVEHPNISLTVVWFVSSDPDTSSG-----IET---TDDRDLDNHAFDEFKDSVVTK 669 (759)
Q Consensus 600 ~~i~~~f~GG~d--dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~-----~~~---~~~~~~d~~~~~~~~~~~~~~ 669 (759)
++|+++..|+++ .+.|+++|.++|+..+.+++++|++++....... .+. +..++..++.++++.++....
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLP 82 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 489999999998 4799999999999999999999999753211000 000 011112223455555444222
Q ss_pred CeEEEEEEeCChhhHHHHHHhh-ccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 670 KITLRVEIVKDGIGTTRVIQTL-TENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 670 ~v~~~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
.+.++..+. .|.....+++.. +.++||+|+|++++ + + +..-+|...+-+... ..|+||||.
T Consensus 83 ~~~~~~~v~-~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~------~----~~~llGS~a~~vl~~-a~cpVlvVr 144 (144)
T PRK15005 83 TDRVHVHVE-EGSPKDRILELAKKIPADMIIIASHRP-D------I----TTYLLGSNAAAVVRH-AECSVLVVR 144 (144)
T ss_pred CCceEEEEe-CCCHHHHHHHHHHHcCCCEEEEeCCCC-C------c----hheeecchHHHHHHh-CCCCEEEeC
Confidence 223322322 332222222222 24799999998632 1 1 123468888888754 677999983
No 38
>PRK09982 universal stress protein UspD; Provisional
Probab=98.23 E-value=8.3e-06 Score=77.31 Aligned_cols=131 Identities=8% Similarity=0.058 Sum_probs=79.6
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcc--cccccccccccccccchhHHHHHHHHHHHhcCC
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVT--AFLKPYHQHTQSVVASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~--~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 510 (759)
+||++++..++....++-+..+... .+.+++++|+++...... +.....+ +......++..+.++.+.+.. +
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-~ 78 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGIYFPATE---DILQLLKNKSDNKLYKLTKNI-Q 78 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhhhccchH---HHHHHHHHHHHHHHHHHHHhc-C
Confidence 6999999999988888877666533 357899999987432110 0000000 000011111222233333322 2
Q ss_pred ceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 511 NIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 511 ~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
...++..... .+..+.||+.|++.++|||+||-| +...+ ..+ .+.++|+++|+|||.|.
T Consensus 79 ~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 79 WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLM-PAYRGMINKMSADLLIV 137 (142)
T ss_pred CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHH-HHHHHHHhcCCCCEEEe
Confidence 2234444444 488999999999999999999965 32111 134 38999999999999774
No 39
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.17 E-value=1.2e-05 Score=76.15 Aligned_cols=133 Identities=5% Similarity=0.031 Sum_probs=79.1
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCCce
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGNI 512 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 512 (759)
|||+|++..++....++.+..+.... ...++++|+.+-.....+-...... ........++..+.++.+.+.. .+
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~--~~ 79 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARPY--NAKVSLIHVDVNYSDLYTGLIDVNL-GDMQKRISEETHHALTELSTNA--GY 79 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHhh--CCEEEEEEEccChhhhhhhhhhcch-HHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 69999999998888888776665432 3688999984321110000000000 0001111222333444444332 23
Q ss_pred EEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 513 VVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 513 ~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
.+...... ..+.++.||+.|++.++||||+|-|++ + .. .++++-.+|+++|||||.|.
T Consensus 80 ~~~~~~~~--~G~p~~~I~~~a~~~~~DLIV~Gs~~~----~-~~----~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 80 PITETLSG--SGDLGQVLVDAIKKYDMDLVVCGHHQD----F-WS----KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred CceEEEEE--ecCHHHHHHHHHHHhCCCEEEEeCccc----H-HH----HHHHHHHHHHhhCCCCEEEe
Confidence 33222221 257889999999999999999998852 1 11 25688999999999999774
No 40
>PRK09982 universal stress protein UspD; Provisional
Probab=98.14 E-value=1.1e-05 Score=76.53 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=62.9
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCC-CC--CC-CCcc---hhhHHHHHHHhhhhcCCCCeE
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTS-SG--IE-TTDD---RDLDNHAFDEFKDSVVTKKIT 672 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~-~~--~~-~~~~---~~~d~~~~~~~~~~~~~~~v~ 672 (759)
++|+++..|+++.+.|+++|.++|+.++++++++|++++..... .. .. ++.+ ++..++.+++.+.+.....+.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTK 83 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcce
Confidence 58999999999999999999999999999999999986432100 00 00 0111 111223455555443222344
Q ss_pred EEEEEeCChhhHHHHHHhhccCCcEEEEccC
Q 044944 673 LRVEIVKDGIGTTRVIQTLTENFDLFIVGKN 703 (759)
Q Consensus 673 ~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~ 703 (759)
+.-+..+.++++++..++ .++||+|+|+|
T Consensus 84 ~~v~~G~p~~~I~~~A~~--~~aDLIVmG~~ 112 (142)
T PRK09982 84 LRIERGEMPETLLEIMQK--EQCDLLVCGHH 112 (142)
T ss_pred EEEEecCHHHHHHHHHHH--cCCCEEEEeCC
Confidence 433333333444444333 47999999975
No 41
>PRK15456 universal stress protein UspG; Provisional
Probab=98.13 E-value=1.9e-05 Score=74.66 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=77.9
Q ss_pred eEEEEeeccCc--ChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCC-CC-CC--CCcc---hhhHHHHHHHhhhhcCCC-
Q 044944 600 YHIVMLFVGGA--DDREALAYSRLMVEHPNISLTVVWFVSSDPDTS-SG-IE--TTDD---RDLDNHAFDEFKDSVVTK- 669 (759)
Q Consensus 600 ~~i~~~f~GG~--ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~-~~-~~--~~~~---~~~d~~~~~~~~~~~~~~- 669 (759)
+||+++..|++ .++.|+++|.++|+.. .+++++|++++..... .. .. ++.+ ++..++.++++..+...+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDP 81 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 58999999984 7999999999999875 5899999986532100 00 00 1111 122234455555444212
Q ss_pred -CeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 670 -KITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 670 -~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
++.+.-...+..+++.+..++ .+.||+|+|.+++ +. +..-+|-..+-++.. .+|+||||.
T Consensus 82 ~~v~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~--~~---------~~~llGS~a~~v~~~-a~~pVLvV~ 142 (142)
T PRK15456 82 SRIKQHVRFGSVRDEVNELAEE--LGADVVVIGSRNP--SI---------STHLLGSNASSVIRH-ANLPVLVVR 142 (142)
T ss_pred cceEEEEcCCChHHHHHHHHhh--cCCCEEEEcCCCC--Cc---------cceecCccHHHHHHc-CCCCEEEeC
Confidence 333322222222233333232 4799999999863 21 123479999999865 777999983
No 42
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.10 E-value=1.7e-05 Score=73.47 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=78.0
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCC--CCcchhhHHHHHH-----HhhhhcCCCCeE
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIE--TTDDRDLDNHAFD-----EFKDSVVTKKIT 672 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~--~~~~~~~d~~~~~-----~~~~~~~~~~v~ 672 (759)
+||++++.|++++++|+++|.++|++.+.+++++|+.+.......... .+.+...++.... +.... ......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA-EGGIVI 81 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh-hcccee
Confidence 499999999999999999999999999999999999976411000000 0000000000000 00011 122333
Q ss_pred EEEEEeCCh-hhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEE
Q 044944 673 LRVEIVKDG-IGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVV 742 (759)
Q Consensus 673 ~~e~~v~~~-~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 742 (759)
+......+. .++.+.+++ .++||+|+|+++... |.+ --+|.+.+-++. +..|+||||
T Consensus 82 ~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~~~---------~~~-~~~gs~~~~l~~-~~~~pVlvv 139 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAEE--HNADLIVMGSRGRSG---------LER-LLFGSVAEKLLR-HAPCPVLVV 139 (140)
T ss_dssp EEEEEESSHHHHHHHHHHH--TTCSEEEEESSSTTS---------TTT-SSSHHHHHHHHH-HTSSEEEEE
T ss_pred EEEEEeeccchhhhhcccc--ccceeEEEeccCCCC---------ccC-CCcCCHHHHHHH-cCCCCEEEe
Confidence 333333344 333444433 589999999998422 222 348999998886 477799987
No 43
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.07 E-value=2.1e-05 Score=74.49 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=75.4
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCC--CCCCC--CCcchhhHH---HHHHHhhhhcCCCCe
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDT--SSGIE--TTDDRDLDN---HAFDEFKDSVVTKKI 671 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~--~~~~~--~~~~~~~d~---~~~~~~~~~~~~~~v 671 (759)
.+||+++..|.+.++.||++|..+|+..+++++++|+..+.... ...+. ++.+++..+ +.++++..+. .+
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 79 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA---GY 79 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC---CC
Confidence 35899999999999999999999999999999999995321100 00000 011111111 2233333222 12
Q ss_pred EEEEEEe---CChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEeecch
Q 044944 672 TLRVEIV---KDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQQQPQ 747 (759)
Q Consensus 672 ~~~e~~v---~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~~~ 747 (759)
...+..+ +..+++++..++ .++||+|+|++++ . | ..+|-..+-+... ..|+||||....+
T Consensus 80 ~~~~~~~~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~--~--------~---~~lgSva~~v~~~-a~~pVLvv~~~~~ 142 (144)
T PRK15118 80 PITETLSGSGDLGQVLVDAIKK--YDMDLVVCGHHQD--F--------W---SKLMSSARQLINT-VHVDMLIVPLRDE 142 (144)
T ss_pred CceEEEEEecCHHHHHHHHHHH--hCCCEEEEeCccc--H--------H---HHHHHHHHHHHhh-CCCCEEEecCCcC
Confidence 2222222 233334444333 4799999999852 1 1 1256666666643 5679999986543
No 44
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.01 E-value=3.9e-05 Score=70.21 Aligned_cols=129 Identities=17% Similarity=0.233 Sum_probs=85.8
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCCce
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGNI 512 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 512 (759)
++++|++..+....+++.+..+.... ...++++|+.+....... ... +....+.++.++.+....+ ..++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~~~~--~~~~ 70 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAA---ELA---ELLEEEARALLEALREALA--EAGV 70 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcch---hHH---HHHHHHHHHHHHHHHHHHh--cCCC
Confidence 68999999999999999988877554 478999999775543221 000 0111222333443333221 2346
Q ss_pred EEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEE
Q 044944 513 VVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGV 580 (759)
Q Consensus 513 ~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgI 580 (759)
.++...... +..++|++.+++.++|++++|.+++....+ ..+++..+++++++||+|.+
T Consensus 71 ~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~------~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 71 KVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRR------LLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred ceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccce------eeeccHHHHHHhCCCCCEEe
Confidence 665554444 238999999999999999999987643221 24667788999999999865
No 45
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.01 E-value=6.6e-05 Score=68.67 Aligned_cols=128 Identities=14% Similarity=0.202 Sum_probs=78.5
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc--CCCCeEEEEEEe
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV--VTKKITLRVEIV 678 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~v~~~e~~v 678 (759)
||++++.+++..+.++.+|.+||+..+.++|++++.++.+.... ..++.+....++.+++++... .+-++.+.-...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA-ELAELLEEEARALLEALREALAEAGVKVETVVLEG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch-hHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 58899999999999999999999999999999999865321000 000112223335666666543 222344332222
Q ss_pred CChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEE
Q 044944 679 KDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVV 742 (759)
Q Consensus 679 ~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 742 (759)
+...++.+.+++ .++|++|+|.++... |.+ --.|.+.+-|... ..++||+|
T Consensus 80 ~~~~~i~~~~~~--~~~dlvvig~~~~~~---------~~~-~~~~~~~~~ll~~-~~~pvliv 130 (130)
T cd00293 80 DPAEAILEAAEE--LGADLIVMGSRGRSG---------LRR-LLLGSVAERVLRH-APCPVLVV 130 (130)
T ss_pred CCHHHHHHHHHH--cCCCEEEEcCCCCCc---------cce-eeeccHHHHHHhC-CCCCEEeC
Confidence 222344444443 579999999986421 211 2467777777754 55577664
No 46
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.00 E-value=0.025 Score=62.31 Aligned_cols=309 Identities=14% Similarity=0.086 Sum_probs=157.5
Q ss_pred CCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHH
Q 044944 40 HQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLI 119 (759)
Q Consensus 40 ~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~ 119 (759)
.+|.++--++.|+++.. +|.++. +...+..+.+.+..+-+-+++.=++.|+++++|.++|.+. ++..-.+..+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~----p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~v 96 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDS----PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTV 96 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCC----CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHH
Confidence 37888888888888875 555522 2335677777777777777777789999999999888664 4444455556
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHHHHhhcc------HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 044944 120 FGMSSFRLIQQQKTRFDVESATGIAASVAANSMTS------LVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMI 193 (759)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts------~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v 193 (759)
+|..+++.+......+ +..-++.+++.|- +..+... ++ .+ ..+.-+....|+++.-+.+.+
T Consensus 97 iG~~va~~l~~~~l~~------~~wk~ag~l~gsyiGGs~N~~Av~~a---l~---~~-~~~~~a~~aaDnv~~~~~~~~ 163 (378)
T PF05684_consen 97 IGAVVAFLLFGGFLGP------EGWKIAGMLAGSYIGGSVNFVAVAEA---LG---VS-DSLFAAALAADNVVMALWFAF 163 (378)
T ss_pred HHHHHHHHHHhhcccc------hHHHHHHHHHhcccCchhHHHHHHHH---HC---CC-HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666664433111 1222222232222 2223322 22 22 233333344555555444444
Q ss_pred HHHHhhcCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCCCCcchHHHHHHHHHHHHHHHHHHhch--
Q 044944 194 LNGVSDAYN--SNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSK--TAEGESMKQSHFISIICIVLGVGFVGTCFGQ-- 267 (759)
Q Consensus 194 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~--~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~-- 267 (759)
...+..-.. ..+...-..-... .-.-..+. ..+.++.. ......+.+.+....+++.++-
T Consensus 164 l~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l 229 (378)
T PF05684_consen 164 LLALPPFARKFDRWTKADTSSIEA-------------LEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWL 229 (378)
T ss_pred HHHHhhhhHHhhhccCCCccccch-------------hhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322000 0000000000000 00000000 00111111 2223333333333333332211
Q ss_pred -----------hhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Q 044944 268 -----------GSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYI 336 (759)
Q Consensus 268 -----------~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~ 336 (759)
-.++-....|++... +|..+.+ .--+.+ ..+++-+||+.+|+..|+..+.+..+ .+++.++.+.
T Consensus 230 ~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap~--~~l~~~i~l~ 304 (378)
T PF05684_consen 230 PPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDAPS--LFLFGFIILA 304 (378)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHhHH--HHHHHHHHHH
Confidence 122233344554443 4444443 333444 67788899999999999998876422 3445555667
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHH
Q 044944 337 GKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIF 388 (759)
Q Consensus 337 ~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~ 388 (759)
.-.+..++.++++|+|..+-..-+- =|.-|-........+++.....+-+.
T Consensus 305 iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pgvL 355 (378)
T PF05684_consen 305 IHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPGVL 355 (378)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHHHH
Confidence 7888888999999999977655544 46666666655555555444444333
No 47
>PRK11175 universal stress protein UspE; Provisional
Probab=97.99 E-value=3.5e-05 Score=82.77 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=83.8
Q ss_pred ceeeeeecCCCCh-------HHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHH
Q 044944 432 LRILVCINKEENM-------NPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQL 504 (759)
Q Consensus 432 lriL~cv~~~~~~-------~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 504 (759)
-+||++++..+.. ..+++.+..+..... ...++++|+.+.......................++..+.++.+
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~-~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLN-HAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKAL 231 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCc-CCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 4799999876543 346666665543320 25789999987543211000000000000011112233344444
Q ss_pred HHhcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeC
Q 044944 505 ERSYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQR 584 (759)
Q Consensus 505 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdr 584 (759)
.+.. ++......... .+..+.|++.|+++++|||+||.|++....+ -.++++.++|++++||||.++-.+
T Consensus 232 ~~~~--~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~------~llGS~a~~v~~~~~~pVLvv~~~ 301 (305)
T PRK11175 232 RQKF--GIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSA------AFLGNTAEHVIDHLNCDLLAIKPD 301 (305)
T ss_pred HHHh--CCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcc------eeecchHHHHHhcCCCCEEEEcCC
Confidence 4332 23222222222 4678999999999999999999988764433 257788999999999999886555
Q ss_pred CC
Q 044944 585 GK 586 (759)
Q Consensus 585 g~ 586 (759)
|+
T Consensus 302 ~~ 303 (305)
T PRK11175 302 GY 303 (305)
T ss_pred CC
Confidence 55
No 48
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.99 E-value=4.9e-05 Score=69.89 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=76.2
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCC
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKD 680 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~ 680 (759)
||++++.|++.+++|+++|.++|++.+.+|+++|+.++... . .+.+ .++.++++++......+.+....-.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~----~---~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN----R---LSEA-ERRRLAEALRLAEELGAEVVTLPGDD 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc----c---CCHH-HHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 58999999999999999999999999999999999875311 0 1111 22344555443311223333222222
Q ss_pred h-hhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEE
Q 044944 681 G-IGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVV 742 (759)
Q Consensus 681 ~-~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 742 (759)
. .++.+.+++ .+.||+|+|.++... | +.--+|-..+-+.-.--.+.|||+
T Consensus 73 ~~~~I~~~~~~--~~~dllviG~~~~~~---------~-~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFARE--HNVTQIVVGKSRRSR---------W-RELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHH--cCCCEEEeCCCCCch---------H-HHHhcccHHHHHHHhCCCCeEEEe
Confidence 2 223333333 578999999997531 1 223578888877754325578876
No 49
>PRK10116 universal stress protein UspC; Provisional
Probab=97.98 E-value=3.7e-05 Score=72.55 Aligned_cols=128 Identities=14% Similarity=0.201 Sum_probs=72.5
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCC---CCcchhh---HHHHHHHhhhhcCCCCeEE
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIE---TTDDRDL---DNHAFDEFKDSVVTKKITL 673 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~---~~~~~~~---d~~~~~~~~~~~~~~~v~~ 673 (759)
+||+++..+.++.+.||++|.++|+..+++|++++++++......... ++.++.. -++.++++..+. .+..
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 80 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA---DYPI 80 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCe
Confidence 599999999999999999999999999999999999854211000000 0011111 112334433332 1222
Q ss_pred EEEEeCChhhHHHHHHhh-ccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 674 RVEIVKDGIGTTRVIQTL-TENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 674 ~e~~v~~~~e~~~~i~~~-~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
.+..+..|.....+++.. +.++||+|+|.++... ++. ++...+-++. ...|+||||-
T Consensus 81 ~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~------~~~------~~s~a~~v~~-~~~~pVLvv~ 138 (142)
T PRK10116 81 EKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSF------FSR------ASCSAKRVIA-SSEVDVLLVP 138 (142)
T ss_pred EEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchH------HHH------HHHHHHHHHh-cCCCCEEEEe
Confidence 222333333322333332 2479999999987421 111 2234555553 3566999984
No 50
>PRK10116 universal stress protein UspC; Provisional
Probab=97.90 E-value=9.7e-05 Score=69.69 Aligned_cols=133 Identities=7% Similarity=0.059 Sum_probs=80.5
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCCce
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGNI 512 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 512 (759)
+||++++..++....++.+..++... ...++++|.++....... . .............++..+.++.+.+. .++
T Consensus 5 ~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 78 (142)
T PRK10116 5 NILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMYNQ-F-AAPMLEDLRSVMQEETQSFLDKLIQD--ADY 78 (142)
T ss_pred eEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccchh-h-hHHHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence 68999999888888888877665433 357888999865321100 0 00000000111112223334444432 223
Q ss_pred EEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 513 VVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 513 ~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
..... .-...+..+.|++.|++.++||||+|-|++..... +.++-.+|+++|||||.|+
T Consensus 79 ~~~~~--~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 79 PIEKT--FIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred CeEEE--EEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEE
Confidence 33222 22447888999999999999999999887643211 1256789999999999875
No 51
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.83 E-value=0.0032 Score=66.21 Aligned_cols=253 Identities=16% Similarity=0.100 Sum_probs=145.3
Q ss_pred HHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHH
Q 044944 83 MILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVL 162 (759)
Q Consensus 83 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL 162 (759)
+..++|-.|-++|++...+..||...+-+.-+.++.+++.+++.+++... ......+.+-++++.|.-..=..+.
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g-----~~Gls~laiiaa~~~~Ng~ly~al~ 125 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG-----IFGLSGLAIVAAMSNSNGGLYAALM 125 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc-----ccchHHHHHHHHHhcCcHHHHHHHH
Confidence 45678899999999999888889888888889999999988888886432 1224566666777777766666666
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 044944 163 KELNMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGES 242 (759)
Q Consensus 163 ~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~ 242 (759)
.|.+ -++|.|-. +...++|.=-+.+++ +. . .++.+ .|
T Consensus 126 ~~yG-~~~d~gA~--~~~sl~~GPf~tm~a-------------------------Lg---a-------~gLA~-ip---- 162 (312)
T PRK12460 126 GEFG-DERDVGAI--SILSLNDGPFFTMLA-------------------------LG---A-------AGLAN-IP---- 162 (312)
T ss_pred HHcC-CHhhhhHH--hhhhhccCcHHHHHH-------------------------HH---H-------HHHhc-CC----
Confidence 7766 34444422 111122211111111 10 0 01111 00
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc
Q 044944 243 MKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES 322 (759)
Q Consensus 243 ~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~ 322 (759)
. ..+ -+.+=|++.|+++.|..+ ++.+.+++= ..+.+|+|-+..|.++|++.+.+.
T Consensus 163 ~--~~l-------------------v~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~ 217 (312)
T PRK12460 163 I--MAL-------------------VAALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA 217 (312)
T ss_pred h--HHH-------------------HHHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh
Confidence 0 000 012345677777777432 333444443 445899999999999999988766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH--HHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHH
Q 044944 323 STRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLA--FIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTS 400 (759)
Q Consensus 323 ~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lg--l~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~ 400 (759)
.+.. +++.++..+.-.+.++...|++|.+.+-+..+| ..-+.-|-..++...-. .+- -.+.-++.+.+.++.|.
T Consensus 218 G~~G-IlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~--~~~-~~~~Ataqvaa~vivTa 293 (312)
T PRK12460 218 GLAG-ILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPS--LAP-VAAAATAQVAASVIVTA 293 (312)
T ss_pred ChHH-HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchh--HHH-HHHHHHHHHHHHHHHHH
Confidence 5543 333333444455556666688898888777666 32222222121111111 111 22455666666777789
Q ss_pred HHHHHH-HHhcCc
Q 044944 401 IASAVV-GYLYDP 412 (759)
Q Consensus 401 i~~plv-~~l~~~ 412 (759)
+..|++ .|.+|+
T Consensus 294 il~P~~t~~~~k~ 306 (312)
T PRK12460 294 ILTPLLTSWVAKK 306 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 888875 565544
No 52
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.80 E-value=0.0072 Score=64.98 Aligned_cols=157 Identities=13% Similarity=0.175 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHhhcc-cCCCCcc----h---------------------HHHHHHHHHHHHHHHHHHhc-----hh
Q 044944 220 CTMFFLLRPLTIWIVSKTA-EGESMKQ----S---------------------HFISIICIVLGVGFVGTCFG-----QG 268 (759)
Q Consensus 220 ~~~~~v~r~~~~~l~~~~~-~~~~~~e----~---------------------~~~~~l~~~l~~~~~~~~~G-----~~ 268 (759)
+.+..++.|+.+|+++|+. +.++.++ . .+.++...+.+-.++.+.++ ++
T Consensus 170 v~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP 249 (404)
T COG0786 170 VAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALP 249 (404)
T ss_pred HHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3456678899999997751 1011111 0 12233333444555566655 67
Q ss_pred hhHHHHHHHhhcCCCCCc--hhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 044944 269 SFLGCFVFGLCLPDGPPL--GTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSS 346 (759)
Q Consensus 269 ~~lGafvaGl~i~~~~~~--~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~ 346 (759)
...++++.|+++.|--+. ..++.++.-+.+.++-+-+|.++.=|++.+..+.+......+++.+-..+.-+.+.++..
T Consensus 250 ~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtf 329 (404)
T COG0786 250 LFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVILAVQTIVMALFAIFVTF 329 (404)
T ss_pred HHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999984211 112444444455788888999988899999888766555555555555566677778888
Q ss_pred HhhCCChHHHHHHHHHhhh-cchhhHHHHhh
Q 044944 347 SFFGISFIKASCLAFIMCC-RGIPEIAMYCM 376 (759)
Q Consensus 347 ~~~~~~~~~~~~lgl~m~~-kG~v~l~~~~~ 376 (759)
+..|-+...+..-+.-+.. -|...-+++++
T Consensus 330 r~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 330 RLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 8888776655443332322 25555566654
No 53
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.70 E-value=0.035 Score=59.93 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=59.5
Q ss_pred HcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHH
Q 044944 36 LRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCL 115 (759)
Q Consensus 36 ~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ 115 (759)
+++.+++.++--|+.|+++|+......+...-| ...-.-+.+-++|.++ .|.+++++++.+.+.+.+.+....+.
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~-Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~ 100 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDEEKKR-GVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILT 100 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchhhccc-hHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHH
Confidence 355689999999999999998542111110000 1112334666777764 58899999999999998877777777
Q ss_pred HHHHHHHHHH-HHHhh
Q 044944 116 IPLIFGMSSF-RLIQQ 130 (759)
Q Consensus 116 ~p~~~~~~~~-~~l~~ 130 (759)
..+.+++.++ ..++.
T Consensus 101 ~~~~~~~~~g~k~l~l 116 (335)
T TIGR00698 101 STFFLTVFLGSSRLKL 116 (335)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 7777766665 35543
No 54
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.57 E-value=0.00052 Score=74.65 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=74.2
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCC--CeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc-C-----CCC
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHP--NISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV-V-----TKK 670 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~--~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~-----~~~ 670 (759)
.+||++++.|++..+.|+++|..+|+.. +++++++|+++....... .+...+..++.+++.++.. . ...
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~---~~~~~~~~eelle~~~~~~~~~l~~~~~g 81 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE---GQDELAAAEELLERVEVWATEDLGDDASS 81 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc---hhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 4699999999999999999999999884 699999999975321111 1111122223444443322 1 135
Q ss_pred eEEEEEEeC---------C-hhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCC
Q 044944 671 ITLRVEIVK---------D-GIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSE 735 (759)
Q Consensus 671 v~~~e~~v~---------~-~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~ 735 (759)
+.++.+++. + .+++++..++ +++||+|+|..-..... -|-|-+++--|+..+.
T Consensus 82 V~ve~~vv~~~~~~~~~G~pae~Iv~~Aee--~~aDLIVm~~~~~~~~~----------~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 82 VTIETALLGTDEYLFGPGDYAEVLIAYAEE--HGIDRVVLDPEYNPGGT----------APMLQPLERELARAGI 144 (357)
T ss_pred CceEEEEEeccccccCCCCHHHHHHHHHHH--cCCCEEEECCCCCCCCC----------CcccchHHHHHHhcCC
Confidence 666555542 2 2233333332 47999999998654431 3455566666665554
No 55
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.47 E-value=0.023 Score=59.61 Aligned_cols=254 Identities=13% Similarity=0.093 Sum_probs=138.0
Q ss_pred HHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHH
Q 044944 83 MILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVL 162 (759)
Q Consensus 83 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL 162 (759)
+..++|-.|-++|++...+..||...+-+.-+++..+++.+++.+++......+.-.....+.+-++++.+....=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 45678889999999999999999999999999999999998888886542100001225567777777777767666666
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 044944 163 KELNMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGES 242 (759)
Q Consensus 163 ~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~ 242 (759)
.|.+ -++|.|- .+...++|.=.+.++++-.+ +
T Consensus 131 ~~yG-d~~D~gA--~~i~sl~~GPf~tMl~LG~s----G----------------------------------------- 162 (314)
T PF03812_consen 131 GQYG-DEEDVGA--FSILSLNDGPFFTMLALGAS----G----------------------------------------- 162 (314)
T ss_pred HHhC-CHHHhHH--HHHHHhhhhHHHHHHHHhhc----c-----------------------------------------
Confidence 6766 2334332 22222333222111111000 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc
Q 044944 243 MKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES 322 (759)
Q Consensus 243 ~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~ 322 (759)
..+..+.. +=..+=+++.|+++.|.. +++.+-+.+- ...++|+|-...|..+|+..+...
T Consensus 163 ~a~ip~~~----------------lv~~llP~iiG~iLGNLD---~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~~a 222 (314)
T PF03812_consen 163 LANIPWMS----------------LVAALLPIIIGMILGNLD---PDFRKFLAPG-VPILIPFFGFALGAGINLSNIIKA 222 (314)
T ss_pred ccCCCHHH----------------HHHHHHHHHHHHHHhcCC---HHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHHHh
Confidence 00000000 001234778888888853 4555555554 778999999999999999988765
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHhhhcchhh----HHHHhhhcccCcCchhHHHHHHHHHHH
Q 044944 323 STRKMELIMVMSYIGKFTGVILSSSFF-GISFIKASCLAFIMCCRGIPE----IAMYCMWKDKKTITSQIFALLIANMVI 397 (759)
Q Consensus 323 ~~~~~~~i~~~~~~~K~i~~~l~~~~~-~~~~~~~~~lgl~m~~kG~v~----l~~~~~~~~~~~i~~~~~~~~v~~~lv 397 (759)
...-++ +-+..++.--...++.-++. |-+-.- |+..++-+.-+ .+++..--+..- -.+.-+.-+.+.++
T Consensus 223 Gl~GIl-Lgv~~~~vtg~~~~~~dr~i~~~~g~a----G~A~sstAGnavatPaaiA~~dP~~~~-~~~~ATaQvAaavI 296 (314)
T PF03812_consen 223 GLSGIL-LGVIVVVVTGIPLYLADRLILKGNGVA----GAAISSTAGNAVATPAAIAAADPSFAP-YAASATAQVAAAVI 296 (314)
T ss_pred CcchHH-HHHHHHHHHhHHHHHHHHHHcCCCCce----eehHHhhhhhhhhhhHHHHHhChhhHh-hHHHHHHHHHHHHH
Confidence 332111 11122222223344444442 333222 22222222222 222222111111 12344555666666
Q ss_pred HHHHHHHHH-HHhc
Q 044944 398 VTSIASAVV-GYLY 410 (759)
Q Consensus 398 ~t~i~~plv-~~l~ 410 (759)
.|.+..|++ .|.+
T Consensus 297 vTail~P~lt~~~~ 310 (314)
T PF03812_consen 297 VTAILTPILTSWWA 310 (314)
T ss_pred HHHHHHHHHHHHHH
Confidence 688888875 4544
No 56
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.43 E-value=0.1 Score=57.57 Aligned_cols=97 Identities=14% Similarity=0.246 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHhhcCCCCCc--hhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 044944 267 QGSFLGCFVFGLCLPDGPPL--GTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVIL 344 (759)
Q Consensus 267 ~~~~lGafvaGl~i~~~~~~--~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l 344 (759)
++...+|++.|+++.+.-+. ..++..+.-+...++.+-+|.+..=+.+++..+.+...+..+++++..++.=+...++
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv 326 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFV 326 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999873210 0112222223335666677777777888888887664443333444444445556677
Q ss_pred HHHhhCCChHHHHHHHHHhh
Q 044944 345 SSSFFGISFIKASCLAFIMC 364 (759)
Q Consensus 345 ~~~~~~~~~~~~~~lgl~m~ 364 (759)
..+..|-++ |+..++...+
T Consensus 327 ~fr~~gkdy-daavm~~G~~ 345 (368)
T PF03616_consen 327 TFRVMGKDY-DAAVMSAGFC 345 (368)
T ss_pred hhhhhCCCh-hHHHHhhhhh
Confidence 777888775 6666554433
No 57
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.30 E-value=0.004 Score=58.83 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=82.2
Q ss_pred ceeeeeec-CCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccc----c-ccccchhHHHHHHHHHH
Q 044944 432 LRILVCIN-KEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHT----Q-SVVASSTHLINAFAQLE 505 (759)
Q Consensus 432 lriL~cv~-~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~----~-~~~~~~~~i~~af~~~~ 505 (759)
-++++.++ ..+........+........ ..++.+++++-............... . ......++..+..+...
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLG--APLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcC--CeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46777777 67666666666655544433 45557777655443221111110000 0 11223355566555554
Q ss_pred HhcCCceE-EEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 506 RSYHGNIV-VQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 506 ~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
+... +. +.....-. ..-.+.|+..|.+.++|+|++|.++++..++ -.++++-++|++++||||-++
T Consensus 84 ~~~~--~~~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~~------~llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 84 EAAG--VPVVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLSR------LLLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHcC--CCeeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCccccc------eeeehhHHHHHhcCCCCEEEE
Confidence 4322 22 23332222 3336999999999999999999987765543 258888999999999999774
No 58
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.13 E-value=0.32 Score=51.78 Aligned_cols=152 Identities=14% Similarity=-0.007 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHH
Q 044944 73 HILRTFAEFGMILHIFVLGVQIDLGLIKHIR---RRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAA 149 (759)
Q Consensus 73 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~---~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ 149 (759)
.+++..-.+++.++||..|+.+..+++++.. |......+.++.+-=+++++++..+.. +.-+..|..
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l----------~~~l~~Gl~ 103 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPL----------PPELAVGLL 103 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCC----------CHHHHHhHH
Confidence 3444455888999999999999999887654 444444445555444555555555531 123444444
Q ss_pred HhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCchhHHHHHHHHHHHHHHHHHHH
Q 044944 150 NSMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNS--NPMKPLYMFPSLFGFYCTMFFLLR 227 (759)
Q Consensus 150 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~r 227 (759)
+..+.+.-+.+...- -+.+.++ -++++.+.++.+++.++.-+...+..++.. +.+..++.++..++.=++..-+.|
T Consensus 104 ll~~~Pggv~S~~~t-~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r 181 (319)
T COG0385 104 LLGCCPGGVASNAMT-YLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLR 181 (319)
T ss_pred heeeCCCchhHHHHH-HHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222222221111 1123333 456677778888888776555554433321 344555555555544445555666
Q ss_pred HHHHHHHhh
Q 044944 228 PLTIWIVSK 236 (759)
Q Consensus 228 ~~~~~l~~~ 236 (759)
+......++
T Consensus 182 ~~~~~~~~~ 190 (319)
T COG0385 182 PLLPKWVER 190 (319)
T ss_pred HHHHHHHHH
Confidence 666544444
No 59
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.05 E-value=0.07 Score=57.06 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=83.2
Q ss_pred cccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHH
Q 044944 37 RPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLI 116 (759)
Q Consensus 37 ~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~ 116 (759)
...+++..+--|+.|+++|+..++.-+. +.+.....-+.+-++|.++ .|.++++.++.+.+.+...+....+..
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~--~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~ 95 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPAR--FKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVIL 95 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHH--HHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHH
Confidence 3467888888899999999623332111 1011111234666777664 588999999999999988888888888
Q ss_pred HHHHHHHHH-HHHhhhhccccchhhHHHHHHHHHHhhc---cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 044944 117 PLIFGMSSF-RLIQQQKTRFDVESATGIAASVAANSMT---SLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCM 192 (759)
Q Consensus 117 p~~~~~~~~-~~l~~~~~~~~~~~~~~~l~ig~~ls~T---s~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~ 192 (759)
.+.+++.++ ..++.+. ..+.++++-.|.. +...++++++. .+.+ -..+++...+=+.++.+++-
T Consensus 96 ~~~~~~~lg~r~~~l~~--------~~~~Lia~GtsICG~SAi~A~a~~i~a---~~~~-~a~ava~V~lfg~vam~~~P 163 (305)
T PF03601_consen 96 TFLLTYWLGRRLFGLDR--------KLAILIAAGTSICGASAIAATAPVIKA---KEED-VAYAVATVFLFGTVAMFLYP 163 (305)
T ss_pred HHHHHHHHHHHHhCCCH--------HHHHHHHhhcccchHHHHHHHcccccC---CCCc-eeeeehHHHHHHHHHHHHHH
Confidence 888877777 6665443 3445555444332 23333333322 2223 23444444455555555554
Q ss_pred HHH
Q 044944 193 ILN 195 (759)
Q Consensus 193 v~~ 195 (759)
.+.
T Consensus 164 ~l~ 166 (305)
T PF03601_consen 164 LLG 166 (305)
T ss_pred HHH
Confidence 443
No 60
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.05 E-value=0.3 Score=54.22 Aligned_cols=94 Identities=13% Similarity=0.240 Sum_probs=59.0
Q ss_pred chhhhHHHHHHHhhcCCCCCc--hhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHH-HHHH
Q 044944 266 GQGSFLGCFVFGLCLPDGPPL--GTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGK-FTGV 342 (759)
Q Consensus 266 G~~~~lGafvaGl~i~~~~~~--~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K-~i~~ 342 (759)
.++...+|++.|+++.|.-+. ..++.++.-+.+.++.+-+|.+..=+.++++.+.+.... .+++.+..++.- +...
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~P-lliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGP-IALILLVQVMFMALYAI 322 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 367889999999999984221 112223333444777888888888899999988766333 333333443333 3455
Q ss_pred HHHHHhhCCChHHHHHHHH
Q 044944 343 ILSSSFFGISFIKASCLAF 361 (759)
Q Consensus 343 ~l~~~~~~~~~~~~~~lgl 361 (759)
++.-+..|-+ .|+..++-
T Consensus 323 fv~fr~mg~~-ydaaV~~a 340 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVLCA 340 (398)
T ss_pred HHhHHhccch-HHHHHHhc
Confidence 6667777766 77766443
No 61
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.34 Score=51.48 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=92.2
Q ss_pred chhHHHHHHHHhcCccccc---CcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHH---HHHHHH
Q 044944 42 TTVMAQILGGAIIGPSILG---DDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAI---GFFGCL 115 (759)
Q Consensus 42 P~iv~~IlaGiilGP~~lg---~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~~ 115 (759)
+-+.-.+++|+.+|-..-+ .+.. -+...++.--.+|+.+.|+=.=+++|.+++++..|+.-.+ -....+
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~-----~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwi 92 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGK-----LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWI 92 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhccc-----ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHH
Confidence 3355667888888843322 2211 0123344555677777777777899999998876653222 222223
Q ss_pred HHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 044944 116 IPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILN 195 (759)
Q Consensus 116 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~ 195 (759)
+-=++.+++++++..+.+ ......+.+|.+ |.++-++-=-++.+.+. ..++....+||++.+++++...
T Consensus 93 i~P~lm~~la~~fl~~~p----ey~~GlILlglA------pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 93 IGPLLMFALAWFFLPDEP----EYRAGLILLGLA------PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHhCCCH----HHHHHHHHHHhh------hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHH
Confidence 222233445554442221 111223333333 22333322224444444 4556666799999999887665
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044944 196 GVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKT 237 (759)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~ 237 (759)
.+.-+.. +..-..+.++..+...+..-++...+.++...|.
T Consensus 162 ~~~l~v~-~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 162 KFFLGVI-SISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHHhhc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433321 1223345555555544555555556666666554
No 62
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=97.00 E-value=0.32 Score=53.61 Aligned_cols=256 Identities=14% Similarity=0.098 Sum_probs=141.0
Q ss_pred hhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHH-----HHhhccHHHHHHHHHhcc
Q 044944 92 VQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVA-----ANSMTSLVVVTSVLKELN 166 (759)
Q Consensus 92 le~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~-----~ls~Ts~~vv~~iL~el~ 166 (759)
+.||.+.+.|...|-+...+.+.+..++++.+.+.+++..+. ...+.++. -...-+.|...-.-+-++
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~-------~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g 181 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK-------DAIFYIVLPIMGGGMGAGAVPLSQIYAEALG 181 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-------HHHHHHHhhhcCCCccccHhHHHHHHHHHhC
Confidence 489999999999999888889999999999999888877553 11122111 111122232222222233
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------C-----CC---------CchhHHHHHHHHHHHHHHHHHH
Q 044944 167 MLNSELGRLASSAAMVSDILSWITCMILNGVSDAY------N-----SN---------PMKPLYMFPSLFGFYCTMFFLL 226 (759)
Q Consensus 167 l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~------~-----~~---------~~~~~~~~~~~~~~~~~~~~v~ 226 (759)
....+.-.-++.+.++.++++++.-++.--+.... + .+ ....-..-...-.++...+|..
T Consensus 182 ~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~ 261 (414)
T PF03390_consen 182 QDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYIL 261 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 33444555566777788888877766654432211 0 00 0000011112222333444444
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHH
Q 044944 227 RPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVF 306 (759)
Q Consensus 227 r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlF 306 (759)
..+...++ ..+ .+...++. ..+...+| ++|+ .-++=.++...|...-+.+-.
T Consensus 262 G~ll~~~i-------~ih-~~a~mIi~-----~~i~K~~~------------lvP~---~~e~~a~~~~~f~~~~lt~~l 313 (414)
T PF03390_consen 262 GVLLSKLI-------GIH-AYAWMIIL-----VAIVKAFG------------LVPE---SLEEGAKQWYKFFSKNLTWPL 313 (414)
T ss_pred HHHHHHhc-------CCc-HHHHHHHH-----HHHHHHhC------------cCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44443333 111 12222211 11112222 1222 233444555555566666667
Q ss_pred HHHhccc-ccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH-HHHHHHhhhcc-hhhHHHHhhhcccCc
Q 044944 307 CAMSGIR-WEMYLLKES-STRKMELIMVMSYIGKFTGVILSSSFFGISFIKA-SCLAFIMCCRG-IPEIAMYCMWKDKKT 382 (759)
Q Consensus 307 F~~~G~~-~dl~~l~~~-~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~-~~lgl~m~~kG-~v~l~~~~~~~~~~~ 382 (759)
.+-+|.. +|++.+... ++. -+++++...++=.+++++.+++.|+-+-|+ ...|+.|+.+| .-++++.+.+...++
T Consensus 314 LvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~L 392 (414)
T PF03390_consen 314 LVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMEL 392 (414)
T ss_pred HHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccc
Confidence 7778888 999887655 454 455666677888899999999999877665 66776777775 445666555544444
Q ss_pred C
Q 044944 383 I 383 (759)
Q Consensus 383 i 383 (759)
+
T Consensus 393 m 393 (414)
T PF03390_consen 393 M 393 (414)
T ss_pred c
Confidence 3
No 63
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.93 E-value=0.059 Score=56.27 Aligned_cols=259 Identities=17% Similarity=0.145 Sum_probs=134.8
Q ss_pred HHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHH
Q 044944 83 MILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVL 162 (759)
Q Consensus 83 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL 162 (759)
+..++|-.|-++|++...+..||...+-+.-+.++.+++.+++.+++..............+.+-++++.|.-..=+.+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45678889999999998888888888888889999999988888887432100001124455566666666655555556
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 044944 163 KELNMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGES 242 (759)
Q Consensus 163 ~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~ 242 (759)
.|.+ -++|.|-. +...++|.=-+.++++ ... +
T Consensus 131 ~qyG-d~~D~gA~--~i~sl~~GPf~TMi~L-------------------------G~s------------------G-- 162 (314)
T TIGR00793 131 QQYG-TKEEAGAF--VLMSLESGPLMTMVIL-------------------------GTA------------------G-- 162 (314)
T ss_pred HHcC-CHhhhhhh--hhhhhccCcHHHHHHH-------------------------hhc------------------c--
Confidence 6665 23344321 1111222111111110 000 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc
Q 044944 243 MKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES 322 (759)
Q Consensus 243 ~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~ 322 (759)
..+..+... =..+=+++.|+++.|-. +++.+-+.+- ...++|+|-...|..+|++.+...
T Consensus 163 lA~ip~~~l----------------v~~ilPlliG~ilGNLD---~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~a 222 (314)
T TIGR00793 163 IASFEPHVF----------------VGAVLPFLVGFALGNLD---PELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQT 222 (314)
T ss_pred CCCCCHHHH----------------HHHHHHHHHHHHHhcCC---HHHHHHhccC-CCeeeehhhhhhcCCCCHHHHHHh
Confidence 000100000 11244778888888854 4454555544 667999999999999999887655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHH
Q 044944 323 STRKMELIMVMSYIGKFTGVILSSSFF-GISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSI 401 (759)
Q Consensus 323 ~~~~~~~i~~~~~~~K~i~~~l~~~~~-~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i 401 (759)
...-+ ++-+...+.--...++.-++. |-+..-+...|-.=..--.+..+++..--+..- -.+.-++.+.++++.|.+
T Consensus 223 Gl~GI-lLGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~-~a~~ATaqvAaavivTai 300 (314)
T TIGR00793 223 GLLGI-LLGVSVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKP-VAPAATALVATSVIVTSL 300 (314)
T ss_pred CcchH-HHHHHHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhh-hHHHHHHHHHHHHHHHHH
Confidence 33211 111112222333445555555 323222333321111111111222222111111 124555666667777999
Q ss_pred HHHHH-HHhcC
Q 044944 402 ASAVV-GYLYD 411 (759)
Q Consensus 402 ~~plv-~~l~~ 411 (759)
..|++ .|.+|
T Consensus 301 L~Pilta~~~k 311 (314)
T TIGR00793 301 LVPIATVWWSK 311 (314)
T ss_pred HHHHHHHHHHH
Confidence 88976 45554
No 64
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.86 E-value=0.46 Score=51.56 Aligned_cols=103 Identities=11% Similarity=0.061 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhcChhHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHH
Q 044944 80 EFGMILHIFVLGVQIDLGLIKHIRRRAVAI---GFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLV 156 (759)
Q Consensus 80 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 156 (759)
.+++.++||-.|+++++++++|..|+...+ -+.++++-=+++++++..+.... ..+.+|..+-.+.+.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~---------p~l~~GliLv~~~Pg 116 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL---------FEYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHhcch
Confidence 346668999999999999998866553332 22333332234555555442211 124455444332222
Q ss_pred -HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 044944 157 -VVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMIL 194 (759)
Q Consensus 157 -vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~ 194 (759)
+.+.+++.+ .+.+.. ++++.+.++.+++.+++-..
T Consensus 117 g~~S~v~T~l--AkGnva-lsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 117 IAMVFVWNQL--AKGDPE-YTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHH--cCCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 233333333 344443 56666677777776666443
No 65
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.25 E-value=0.72 Score=49.50 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=54.9
Q ss_pred hhhhhHHHHHHHhccc-ccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH-HHHHhhhcchh-hHHH
Q 044944 298 TSGFLIPVFCAMSGIR-WEMYLLKES-STRKMELIMVMSYIGKFTGVILSSSFFGISFIKASC-LAFIMCCRGIP-EIAM 373 (759)
Q Consensus 298 ~~~~~~PlFF~~~G~~-~dl~~l~~~-~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~-lgl~m~~kG~v-~l~~ 373 (759)
.+.+.-|+.+. +|.. +|+..+.+. +|. -+++++...++-..+.++.+|+.|+-+-|+.. -|+.|+.+|.. ++++
T Consensus 325 sk~~t~~Lm~g-iGv~ytdl~ev~~alt~~-~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaV 402 (438)
T COG3493 325 SKNLTWPLMAG-IGVAYTDLNEVAAALTWQ-NVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAV 402 (438)
T ss_pred HHhhHHHHHHh-hhhccccHHHHHHHhchh-HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHH
Confidence 34455565554 5665 888877655 554 34555566677888999999999987777655 45889888554 5555
Q ss_pred HhhhcccCcC
Q 044944 374 YCMWKDKKTI 383 (759)
Q Consensus 374 ~~~~~~~~~i 383 (759)
.+.+-..+++
T Consensus 403 LsAa~RM~Lm 412 (438)
T COG3493 403 LSAADRMELM 412 (438)
T ss_pred hhhcchhccc
Confidence 5554444444
No 66
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.24 E-value=0.11 Score=54.74 Aligned_cols=133 Identities=13% Similarity=0.168 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCch-hHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHH
Q 044944 254 IVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLG-TQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMV 332 (759)
Q Consensus 254 ~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~-~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~ 332 (759)
.....+.+++.++++.++|-.++|+++.... ++ -+-.+.++.+ ..+-+.++....|+++|++.+... +.....+..
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~-~~~~~~~~~ 79 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL-RKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHH
Confidence 3455678888999999999999999987521 11 0111234444 556677788889999999887654 222333333
Q ss_pred HHHHHH-HHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHH
Q 044944 333 MSYIGK-FTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALL 391 (759)
Q Consensus 333 ~~~~~K-~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~ 391 (759)
..++.= ++.++..+++.+.++.+++.+|..+++-. .-+.+.+..|.+..+.+.-..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~ 137 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTV 137 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHH
Confidence 333333 44445566778999999999999887653 2334445556666554444333
No 67
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.19 E-value=2.3 Score=45.80 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhhcChhHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhh
Q 044944 76 RTFAEFGMILHIFVLGVQIDLGLIKHIRRRA---VAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSM 152 (759)
Q Consensus 76 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~ 152 (759)
|.....++..+.|..|+.++.+++++..++. ...-...+++.=++++.+...+.... ...+..|.....
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~--------~~~l~~Gl~~~~ 101 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL--------PPELALGLLILA 101 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC--------CHHHHHHHHHHh
Confidence 4677788888889999999999998765543 22222333333334444444443211 122333333322
Q ss_pred ccHHH-HHH-HHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 153 TSLVV-VTS-VLKELNMLNSELGRLASSAAMVSDILSWITCMILNGVSD 199 (759)
Q Consensus 153 Ts~~v-v~~-iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~ 199 (759)
.-++. .+. .+. +..+.+. ..++..+.++.+++.++.-+...+..
T Consensus 102 ~lPtTv~S~v~~T--~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 102 CLPTTVSSSVVLT--RLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred hCCchhhHHHHHH--HHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 22111 111 122 2233333 45677778888888877755554433
No 68
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.16 E-value=0.11 Score=61.34 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhH
Q 044944 248 FISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDG-PPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRK 326 (759)
Q Consensus 248 ~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~-~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~ 326 (759)
....++...+...++..+|+++++|=.++|+++... -..-. -.+.++.+ ..+-+.++...+|+.+|+..+... ...
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~-~~~ 86 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLWKL-RRS 86 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH-HHH
Confidence 344556666777888889999999999999988542 11111 12335555 667777888889999999887643 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcc
Q 044944 327 MELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRG 367 (759)
Q Consensus 327 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG 367 (759)
++.+....++.-.+..+..++++|.++..++.+|..++.-.
T Consensus 87 ~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 87 IFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 11111222222233334556778999999999888775443
No 69
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.12 E-value=0.33 Score=52.28 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 84 ILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQ 130 (759)
Q Consensus 84 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~ 130 (759)
..++|..|-.+|++...+..||...+.+.-+.+..+++...+.+++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 36888999999999988888888888788888888887777766654
No 70
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.03 E-value=0.075 Score=49.98 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=81.1
Q ss_pred ceEEEEeec-cCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCC---CC-------CcchhhHHHHHHHhhhhcC
Q 044944 599 SYHIVMLFV-GGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGI---ET-------TDDRDLDNHAFDEFKDSVV 667 (759)
Q Consensus 599 ~~~i~~~f~-GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~---~~-------~~~~~~d~~~~~~~~~~~~ 667 (759)
..+|++.+. |.+-.+.|++.|...+...+..++++.+++......... .. +...+..++..++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 358999999 999999999999999999999999888876542111100 00 0112233455555554431
Q ss_pred CC--C-eEEEEEEeCC-hhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 668 TK--K-ITLRVEIVKD-GIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 668 ~~--~-v~~~e~~v~~-~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
.. . +.+.....+. ..++....++ +++||+++|.++.. .|.+ --||-+-+.++.. ..++|||+.
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~~--~~adliV~G~~g~~---------~l~~-~llGsvs~~v~~~-~~~pVlvv~ 151 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAEE--EDADLIVVGSRGRS---------GLSR-LLLGSVAEKVLRH-APCPVLVVR 151 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHHH--hCCCEEEECCCCCc---------cccc-eeeehhHHHHHhc-CCCCEEEEc
Confidence 11 2 2332222222 1233323232 47999999997432 2222 4578888888864 777999997
Q ss_pred ec
Q 044944 744 QQ 745 (759)
Q Consensus 744 q~ 745 (759)
..
T Consensus 152 ~~ 153 (154)
T COG0589 152 SE 153 (154)
T ss_pred cC
Confidence 53
No 71
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.89 E-value=0.22 Score=53.23 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=79.7
Q ss_pred HhchhhhHHHHHHHhhcCC-CCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHH
Q 044944 264 CFGQGSFLGCFVFGLCLPD-GPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGV 342 (759)
Q Consensus 264 ~~G~~~~lGafvaGl~i~~-~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~ 342 (759)
..++++.+=|.+.|+++.| .....+...+-++.. ...++.+=-+..|.++++..+.+..+......++...+.=.++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~ 101 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTY 101 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 3577788889999999998 544455555555543 56788888999999999998876655434444444444444444
Q ss_pred HHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhh
Q 044944 343 ILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMW 377 (759)
Q Consensus 343 ~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~ 377 (759)
++..+.+|++.+.+..+|...+.=|.-+++...-.
T Consensus 102 ~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~ 136 (305)
T PF03601_consen 102 WLGRRLFGLDRKLAILIAAGTSICGASAIAATAPV 136 (305)
T ss_pred HHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccc
Confidence 55559999999999999998777776665554433
No 72
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.82 E-value=0.23 Score=58.18 Aligned_cols=133 Identities=8% Similarity=0.059 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC-CchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHH
Q 044944 251 IICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGP-PLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMEL 329 (759)
Q Consensus 251 ~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~-~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~ 329 (759)
+++..++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++...+|+++|++.+... ......
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~-~~~~~~ 90 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV-KSIAIP 90 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH-hhHHHH
Confidence 3555666777788889999999999999986531 11111 1234444 566667777788999999887543 111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHH
Q 044944 330 IMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIF 388 (759)
Q Consensus 330 i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~ 388 (759)
..+...+.=++.++...+.++.++.+++.+|..++.-.. .+++....|.|.++.+.-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 91 GAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQRG 147 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcch
Confidence 111222222334444566778999999999987776332 344555566776665433
No 73
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.75 E-value=0.14 Score=50.77 Aligned_cols=129 Identities=17% Similarity=0.295 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChh-----HHHhhhhhhHHHHHHHHHHHHH
Q 044944 45 MAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLG-----LIKHIRRRAVAIGFFGCLIPLI 119 (759)
Q Consensus 45 v~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~-----~l~~~~~~~~~ia~~~~~~p~~ 119 (759)
++.+++|+++|-..... ....+...+..+.+++|.+|+++--+ .+++.+++++.+.+...+-+++
T Consensus 2 l~~li~Gi~lG~~~~~~----------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSll 71 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP----------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLL 71 (191)
T ss_pred eeeHHHHHHHHHHhccc----------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34567888888543222 12226788888999999999998544 5677788999999999999998
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 044944 120 FGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILN 195 (759)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~ 195 (759)
.+.+.+.+++... .+++.++.-+.= +.....++.|+ .+.+.|.++.=+=++-+++++++.-++.
T Consensus 72 gg~l~~~ll~~~~--------~~~lav~sG~Gw--YSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 72 GGLLASLLLGLSL--------KESLAVASGFGW--YSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHhcCCH--------HHHHHHHccCcH--HHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888885443 345554443321 11222233443 3567888777777777776666554443
No 74
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.72 E-value=0.093 Score=55.81 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=84.9
Q ss_pred HHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHH
Q 044944 261 VGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFT 340 (759)
Q Consensus 261 ~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i 340 (759)
..+..|+++.+=|.+.|+++.+.++.+.+...-++.. ...++.+=.+..|++++++.+.+.++. .+.+.+.....-++
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~G~~-~v~~~~~~l~~t~~ 108 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADVGGS-GVLIIAITLSSTFL 108 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHcCcc-HHHHHHHHHHHHHH
Confidence 3445566788889999999997666666666666655 677888888999999999988766554 34445555666777
Q ss_pred HHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHh
Q 044944 341 GVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYC 375 (759)
Q Consensus 341 ~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~ 375 (759)
.++..++++|+|++.+..+|..-+.=|.-+++...
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~ 143 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGASAIAATA 143 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhC
Confidence 77888889999999999999887777765554444
No 75
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.72 E-value=3.5 Score=43.84 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhhhcChhHHHhhhhh--hHHHHHH-HH-HHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHH-
Q 044944 76 RTFAEFGMILHIFVLGVQIDLGLIKHIRRR--AVAIGFF-GC-LIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAAN- 150 (759)
Q Consensus 76 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~l- 150 (759)
..+.-..+.+.||..|+.++.+++++..|+ ....++. .+ +.|.+ ++.++..++.+ .....|..+
T Consensus 7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l~----------~~~~~glvL~ 75 (286)
T TIGR00841 7 STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKLP----------PELAVGVLIV 75 (286)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCCC----------HHHHHHHHhe
Confidence 333344488899999999999999887663 3333333 33 44444 35555554322 122233222
Q ss_pred hhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044944 151 SMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILNG 196 (759)
Q Consensus 151 s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~ 196 (759)
+.+..++.+.++.++- +.+ ..++.+...++-+++.+.+-+...
T Consensus 76 ~~~P~~~~s~v~t~~~--~gn-~~la~~~~~~stlls~vt~Pl~l~ 118 (286)
T TIGR00841 76 GCCPGGTASNVFTYLL--KGD-MALSISMTTCSTLLALGMMPLLLY 118 (286)
T ss_pred eeCCCchHHHHHHHHh--CCC-HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222233334444432 222 355566666677777666554443
No 76
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.27 Score=54.89 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhH
Q 044944 248 FISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPD-GPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRK 326 (759)
Q Consensus 248 ~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~-~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~ 326 (759)
...++..+...+++.+.+|+++++|=.++|+++.+ +...-.+-.+.++.+ ..+=.-++...+|+.+|+..+.......
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~l-aelGvi~LlF~~GLE~~~~~l~~~~~~~ 89 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELL-AELGVVFLLFLIGLEFDLERLKKVGRSV 89 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHH-HHHhHHHHHHHHHHCcCHHHHHHhchhh
Confidence 45556666777799999999999999999999997 221122222223322 3444455666789999999887652221
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHH
Q 044944 327 MELIMVMSYIGKFTGV--ILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASA 404 (759)
Q Consensus 327 ~~~i~~~~~~~K~i~~--~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~p 404 (759)
........+..=++.. +... +++.++.+++.+|..+..-.. -+.+.+..|.|...++....++.+.++.=...-|
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~ 166 (397)
T COG0475 90 GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVFDDIAAIL 166 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 2222 589999999999988766442 1334455666777766666555555543333333
Q ss_pred H
Q 044944 405 V 405 (759)
Q Consensus 405 l 405 (759)
+
T Consensus 167 l 167 (397)
T COG0475 167 L 167 (397)
T ss_pred H
Confidence 3
No 77
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.69 E-value=0.72 Score=49.81 Aligned_cols=272 Identities=10% Similarity=0.039 Sum_probs=134.8
Q ss_pred hhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCCh
Q 044944 92 VQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSE 171 (759)
Q Consensus 92 le~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~ 171 (759)
+.||.+.+.|...|-+...+.+.+..++++.+++.+++..+.+ .......-.+|--...-+.|..--.-+-++....+
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~--~~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~ 117 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDH--SLMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEE 117 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH--hhheeeehhcCCCcccchhhHHHHHHHHhCCCHHH
Confidence 4899999999999988888888888888888888887765431 00000000011001111112111111112323333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccc-CCCCcchH
Q 044944 172 LGRLASSAAMVSDILSWITCMILNGVSDAYNS--NPMKPLYMFPSLFGFYCTMFFLLRPL-TIWIVSKTAE-GESMKQSH 247 (759)
Q Consensus 172 ~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~r~~-~~~l~~~~~~-~~~~~e~~ 247 (759)
.-..++.+.++.++++++.-++.--+...... +-.... |.- -.-..+..++ ..+.+-..
T Consensus 118 ~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 180 (347)
T TIGR00783 118 IFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELV-----------------RSEKREDAEKAKEITEIKIDVKL 180 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEe-----------------ecCCcchhhhccccccCCCCHHH
Confidence 33445555666666666555544332111000 000000 000 0000000000 00111111
Q ss_pred HHHHHHHHH---HHHHHHHHh-chhhhHHHHHHHhhcCCCCCchhHHHhHHhhh---hhhhhHHHHHHHhccc-cccccc
Q 044944 248 FISIICIVL---GVGFVGTCF-GQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFF---TSGFLIPVFCAMSGIR-WEMYLL 319 (759)
Q Consensus 248 ~~~~l~~~l---~~~~~~~~~-G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~---~~~~~~PlFF~~~G~~-~dl~~l 319 (759)
+..-+.+.+ ..+.+.+.+ ++|+..-..++|.++....-..+++.++...+ ...-+.+..++-+|+. +|++.+
T Consensus 181 ~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L 260 (347)
T TIGR00783 181 MGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDL 260 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHH
Confidence 111111111 222122222 56777777777777776544455555554443 2333444444455766 788777
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH-HHHHHHhhhcch-hhHHHHhhhcccCcC
Q 044944 320 KES-STRKMELIMVMSYIGKFTGVILSSSFFGISFIKA-SCLAFIMCCRGI-PEIAMYCMWKDKKTI 383 (759)
Q Consensus 320 ~~~-~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~-~~lgl~m~~kG~-v~l~~~~~~~~~~~i 383 (759)
.+. ++. .+++++...++=.+++++.+++.|+-+-|+ ...|+.|+.+|. -++++.+.+...+++
T Consensus 261 ~~a~t~~-~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 261 VAALSWQ-FVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred HHHhchh-HhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccc
Confidence 655 343 556666777888999999999999766665 556777877754 455555554444443
No 78
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.67 E-value=0.42 Score=56.40 Aligned_cols=109 Identities=9% Similarity=0.070 Sum_probs=67.6
Q ss_pred HHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHH
Q 044944 29 TRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVA 108 (759)
Q Consensus 29 ~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ 108 (759)
.....++.+.+|+..++|-.++|++++.+-+. .+....++.+..+-+.+|...+|+++|++.+...+...+.
T Consensus 225 vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~--------~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~ 296 (601)
T PRK03659 225 VLGSALFMDALGLSMALGTFIAGVLLAESEYR--------HELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLI 296 (601)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhcCCchH--------HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHH
Confidence 34445667888999999999999999853211 1123456667777778888889999999988776554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhc
Q 044944 109 IGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMT 153 (759)
Q Consensus 109 ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~T 153 (759)
+.+..++.=++.++..+.+++..+ ..++.+|..++.-
T Consensus 297 ~~~~~l~~K~~~~~~~~~~~g~~~--------~~al~~g~~L~~~ 333 (601)
T PRK03659 297 SVVVLVAVKGLVLYLLARLYGLRS--------SERMQFAGVLSQG 333 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHhcc
Confidence 333333333334444444443332 4566666666543
No 79
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.63 E-value=0.52 Score=45.84 Aligned_cols=115 Identities=20% Similarity=0.337 Sum_probs=77.1
Q ss_pred cccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhH---HHhhhhhhHHHHHHH
Q 044944 37 RPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGL---IKHIRRRAVAIGFFG 113 (759)
Q Consensus 37 ~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~ 113 (759)
+++++-...|-+++|+++|- ++...+... .....+.+.++|+.+|++.+|++--++. +|+.+.+...+++.-
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~--~~~~~~~~~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i 93 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGA--LGRTGPIFL---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVII 93 (169)
T ss_pred cceeccccHHHHHHHHHHHH--hhhccCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55666677789999999984 222211111 2456778999999999999999988764 456667777778887
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHh
Q 044944 114 CLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKE 164 (759)
Q Consensus 114 ~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~e 164 (759)
..+|.+++...++++.+.. .....=..+-+.|++|.+....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~--------~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 94 TLVPLLIALVIGRYLFKLN--------PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHcCCC--------HHHHHHHHHccccCcHHHHHHHHh
Confidence 8888888887777433221 122222344567777887776554
No 80
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.53 E-value=4.3 Score=43.51 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=70.2
Q ss_pred cccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHH
Q 044944 37 RPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLI 116 (759)
Q Consensus 37 ~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~ 116 (759)
...+.|..+--|+.|+++|.. ...+.... ....-.-..+-++|.++ .|.+++++++...+.+.+.+-......
T Consensus 33 ~~~~l~al~lAIllGi~l~~l--~~~~~~~~-~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~ 105 (334)
T COG2855 33 IHLGLSALTLAILLGILLGIL--PQIPAQTS-AGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSS 105 (334)
T ss_pred hhcCchHHHHHHHHHHHHhcc--ccchhhhc-cchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHH
Confidence 456799999999999999932 22221000 11122234555667664 488999999999999999988888888
Q ss_pred HHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhc
Q 044944 117 PLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMT 153 (759)
Q Consensus 117 p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~T 153 (759)
++++++.++.+++.++ ..++++|+-.|..
T Consensus 106 t~~~~~~lg~~lgld~--------~~a~Lia~GssIC 134 (334)
T COG2855 106 TFLFAYFLGKLLGLDK--------KLALLIAAGSSIC 134 (334)
T ss_pred HHHHHHHHHHHhCCCH--------HHHHHHHccchhh
Confidence 8988888888776654 3566666544443
No 81
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=95.40 E-value=0.17 Score=55.26 Aligned_cols=132 Identities=8% Similarity=0.031 Sum_probs=79.7
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHh----
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERS---- 507 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~---- 507 (759)
-|||++++..++....++-+-.+....+...+++++|+++.... ....+ ....+.+++++..+...+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~----~~~~~----~~~~~~eelle~~~~~~~~~l~~ 77 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAV----DPEGQ----DELAAAEELLERVEVWATEDLGD 77 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccc----ccchh----HHHHHHHHHHHHHHHHHHHhhhc
Confidence 47999999999999888887766643212479999999884321 10000 1112234455555544322
Q ss_pred cCCceEEEEEEEEc-----cCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcce
Q 044944 508 YHGNIVVQHFTTIA-----PYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSV 578 (759)
Q Consensus 508 ~~~~v~v~~~t~vs-----~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsV 578 (759)
....++++...... ...+.++.|++.|++.++|+|+|+-..+. +| +....|.+-+. |.++-|++
T Consensus 78 ~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~--~~----~~~~~~~~~~~-~~~~~~~~ 146 (357)
T PRK12652 78 DASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP--GG----TAPMLQPLERE-LARAGITY 146 (357)
T ss_pred ccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC--CC----CCcccchHHHH-HHhcCCce
Confidence 11356776555442 11588999999999999999999954433 22 22234444333 44555553
No 82
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.32 E-value=0.8 Score=45.43 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhcChhHHHhhhhhhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhh-ccHH
Q 044944 81 FGMILHIFVLGVQIDLGLIKHIRRRAVAIG---FFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSM-TSLV 156 (759)
Q Consensus 81 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia---~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~-Ts~~ 156 (759)
+.+.+.||..|+++|++++++..|+...+. +..+++.=++++++++.+.... .....|..+.. +.-+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~---------~~~~~Gl~l~~~~P~~ 72 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS---------PALALGLLLVAACPGG 72 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT-----------HHHHHHHHHHHHS-B-
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHhcCCcH
Confidence 457889999999999999998776644332 2333333334455542222221 12222322211 1112
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044944 157 VVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILNGVS 198 (759)
Q Consensus 157 vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~ 198 (759)
..+.....+ .+.+. .++++...++.+.+.+..-+...+.
T Consensus 73 ~~s~~~t~l--~~Gd~-~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 73 PASNVFTYL--AGGDV-ALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp THHHHHHHH--TT--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence 233333333 34343 3666677788877777765555443
No 83
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.12 E-value=0.38 Score=56.44 Aligned_cols=128 Identities=9% Similarity=0.123 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchh--HHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHH
Q 044944 250 SIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGT--QLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKM 327 (759)
Q Consensus 250 ~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~--~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~ 327 (759)
+++++..+++.++..+|++.+++-.++|+++.....-.- .-.+-.+. ...+.+++.....|+++|+..+... +..+
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~-i~~l~L~~iLF~~Gl~~~~~~l~~~-~~~~ 90 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYL-VGNLALAVILFDGGLRTRWSSFRPA-LGPA 90 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHH-HHHHHHHHHHHcCccCCCHHHHHHH-HHHH
Confidence 344445566677778888888888888888876321100 11122333 3778889899999999999988754 3333
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccC
Q 044944 328 ELIMVMSYIGKFTG-VILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKK 381 (759)
Q Consensus 328 ~~i~~~~~~~K~i~-~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~ 381 (759)
..+....++.-.+. ++...+++++++.+++.+|.++++-.... +..+..+.+
T Consensus 91 ~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~--v~~iL~~~~ 143 (562)
T PRK05326 91 LSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAA--VFSLLRGKG 143 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHH--HHHHHhccC
Confidence 33333333333333 44556678999999999998877765432 233334444
No 84
>PRK03818 putative transporter; Validated
Probab=95.01 E-value=0.62 Score=54.24 Aligned_cols=130 Identities=15% Similarity=0.253 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHH-cccCCchhHHHHHHHHhcCccc--ccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcC
Q 044944 19 LLQMVVIFLSTRAIYFLL-RPFHQTTVMAQILGGAIIGPSI--LGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQID 95 (759)
Q Consensus 19 ll~l~lil~~~~l~~~l~-~rl~~P~iv~~IlaGiilGP~~--lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d 95 (759)
++-+++.+.+..+++.+- +.+++- +.|-+++|+++|-.. +|.- .| ......+.++|+.+|+|.+|++.-
T Consensus 8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~~~~~----~~---~~~~~~~~~~gl~lFv~~vGl~~G 79 (552)
T PRK03818 8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQFGLT----LD---SDMLHFIQEFGLILFVYTIGIQVG 79 (552)
T ss_pred HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccccCcc----cC---hHHHHHHHHHHHHHHHHHHhhccc
Confidence 334444444444444321 223333 478889999998421 1210 11 456778999999999999999998
Q ss_pred hhHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhc
Q 044944 96 LGLI---KHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKEL 165 (759)
Q Consensus 96 ~~~l---~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el 165 (759)
++.+ |+.+.+...+++.-.+++.++++.+.++++..+ ....=..+-+.|+.|.+....+..
T Consensus 80 p~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 80 PGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL---------PVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHhhccccccHHHHHHHHHH
Confidence 8755 555666667777777777777766655554332 122223445777778777765433
No 85
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.37 E-value=0.3 Score=46.68 Aligned_cols=110 Identities=14% Similarity=0.229 Sum_probs=66.3
Q ss_pred chhHHHHHHHHhcCcccccCcCC--CcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhh----hhHHHHHHHHH
Q 044944 42 TTVMAQILGGAIIGPSILGDDTS--TLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRR----RAVAIGFFGCL 115 (759)
Q Consensus 42 P~iv~~IlaGiilGP~~lg~~~~--~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~~~ 115 (759)
-..-|-+++|+++|- ++...+ +-.| ......+.++|+.+|++.+|++--.+.+..-.+ ....++..-.+
T Consensus 22 G~~~G~L~vgL~~G~--~~~~~p~~~~~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~ 96 (154)
T TIGR01625 22 GNAGGVLFVGLLLGH--FGATGPLTWYIP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITV 96 (154)
T ss_pred cccHHHHHHHHHHHh--ccccCCcceecC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence 337788999999985 344333 2223 346778899999999999999998875543222 22333444444
Q ss_pred HHHHHHHHHHHHHhhhhccccchhhHHHHHHH-HHHhhccHHHHHHHHHhc
Q 044944 116 IPLIFGMSSFRLIQQQKTRFDVESATGIAASV-AANSMTSLVVVTSVLKEL 165 (759)
Q Consensus 116 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~el 165 (759)
+|.+++..+...+.+.. .....| .+-+.|++|.+....+..
T Consensus 97 ~~~~~~~~~~~~~~~~~---------~~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 97 VPTLLVAVALIKLLRIN---------YALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHhCCC---------HHHHHHHHhccccChHHHHHHHHHh
Confidence 55555544443332221 123333 446778888887776544
No 86
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.25 E-value=1.1 Score=48.70 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=70.4
Q ss_pred hchhhhHHHHHHHhhcCCCC--CchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHH
Q 044944 265 FGQGSFLGCFVFGLCLPDGP--PLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGV 342 (759)
Q Consensus 265 ~G~~~~lGafvaGl~i~~~~--~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~ 342 (759)
.++++.+=|.+.|+++.|.. +..+....-++ +....++-+=.+..|.++++.++....+......++.....=+++.
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~ 107 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTV 107 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46777788889999998832 12222222222 3355667777888999999998866555433333333333333445
Q ss_pred HHHHHhhCCChHHHHHHHHHhhhcchhhHHHHh
Q 044944 343 ILSSSFFGISFIKASCLAFIMCCRGIPEIAMYC 375 (759)
Q Consensus 343 ~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~ 375 (759)
++..+.+|++++.+..+|..-+.=|.-+++...
T Consensus 108 ~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a 140 (335)
T TIGR00698 108 FLGSSRLKLDKQMSILLGAGSSICGAAAVAAIE 140 (335)
T ss_pred HHHHHHhCCChhHHHHHHcchhHHHHHHHHHhc
Confidence 555589999999999998877777765555444
No 87
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=94.16 E-value=10 Score=41.10 Aligned_cols=299 Identities=16% Similarity=0.177 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCch--hHH-HHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 044944 18 LLLQMVVIFLSTRAIYFLLRPFHQTT--VMA-QILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQI 94 (759)
Q Consensus 18 ~ll~l~lil~~~~l~~~l~~rl~~P~--iv~-~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 94 (759)
...|-++.+.++...++++..+++|. ..| -+++|++.+--... +. .| ..+-..|.+.+=-.+|..+
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~---~P-------~~l~~~~q~ilG~~ig~~~ 75 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LP---LP-------RGLFKAGQVILGIMIGASL 75 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-cc---CC-------hHHHHHHHHHHHHHHhhhc
Confidence 35677888888999999999988764 455 56667777622111 11 11 3445556666666889998
Q ss_pred ChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHH
Q 044944 95 DLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGR 174 (759)
Q Consensus 95 d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~ 174 (759)
..+.+.. .++.+.+.....+++...+...+|++..... .+. ..+++-..--..+ ....+-+|.| .| ...
T Consensus 76 t~s~l~~-l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~-~~~---~Ta~~gs~PGgas---~m~~iA~d~g-Ad--~~~ 144 (352)
T COG3180 76 TPSVLDT-LKSNWPIVLVVLLLTLLSSILLGWLLKRFSI-LPG---NTAFLGSSPGGAS---AMVSIAQDYG-AD--LRL 144 (352)
T ss_pred CHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHhcC-CCc---chhhHhcCCchHH---HHHHHHHHhC-CC--hhH
Confidence 8886643 3344444455555566666666666654431 111 1121111111111 1112223444 22 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC------CCCcchHH
Q 044944 175 LASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEG------ESMKQSHF 248 (759)
Q Consensus 175 l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~------~~~~e~~~ 248 (759)
.++.-.+ -++.+.++ .-++.+.... .++..+. .+.....+
T Consensus 145 VAl~Q~l--Rvl~Vvl~------------------------------vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~ 190 (352)
T COG3180 145 VALMQYL--RVLFVVLL------------------------------APLVSRLFVG--DGANGSGTPEIWLPPVDWLIL 190 (352)
T ss_pred HHHHHHH--HHHHHHHH------------------------------HHHHHHHhcC--CCCCCCCCccccCchhhHHHH
Confidence 1111100 00011111 1111110000 0000000 01111113
Q ss_pred HHHHHHHHHHHHHHHHhchh--hhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc--hh
Q 044944 249 ISIICIVLGVGFVGTCFGQG--SFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES--ST 324 (759)
Q Consensus 249 ~~~l~~~l~~~~~~~~~G~~--~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~--~~ 324 (759)
.+.....++.+.+...+++. .++|+++.|..+.-+....-++-+-+ ..+-.-+.-..+|.++|-..+... ..
T Consensus 191 ~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl----~~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 191 LLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL----LAVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH----HHHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 33334444444455555542 45677777777665432222221111 122333455678898886665433 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcc
Q 044944 325 RKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKD 379 (759)
Q Consensus 325 ~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~ 379 (759)
...++.++..++.-...+++..++.+.++.++.. | .+|-|.-+++....+.+
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L-a--~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL-A--TSPGGLDTMAAIAAALG 318 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-H--cCCCcHHHHHHHHHHcC
Confidence 2344455555666677778888888999876543 3 58888888777666553
No 88
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.71 E-value=0.71 Score=53.93 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=76.7
Q ss_pred ccCCchhHHHHHHHHhcCcccccCcCC--CcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhH---HHhhhhhhHHHHHH
Q 044944 38 PFHQTTVMAQILGGAIIGPSILGDDTS--TLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGL---IKHIRRRAVAIGFF 112 (759)
Q Consensus 38 rl~~P~iv~~IlaGiilGP~~lg~~~~--~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~ 112 (759)
++.+-...|-+++|+++|- ++...+ +-.| ......+.++|+.+|++.+|++--++. +++.+.+...+++.
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~ 486 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIV 486 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcceecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 3445556788899999985 333222 1233 456678999999999999999988764 46666777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHH-HHHhhccHHHHHHHHHhc
Q 044944 113 GCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASV-AANSMTSLVVVTSVLKEL 165 (759)
Q Consensus 113 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL~el 165 (759)
-.++|.++++.+++++.+.. .....| .+-+.|++|.+....+..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~---------~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 487 VTILPLIITMLIGKYVLKYD---------PALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHhCCC---------HHHHHHHhhccCCCcHHHHHHHHhc
Confidence 77888888877774433221 123334 556788888887765543
No 89
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.35 E-value=1.9 Score=52.92 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=30.0
Q ss_pred cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeec
Q 044944 431 NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELK 473 (759)
Q Consensus 431 elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~ 473 (759)
..||.+.+-+-.+=+..+.++..++..+ .++++++|.+...
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p--~v~lTVirf~~~~ 670 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHP--GITLTVMRFIPGE 670 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCC--CeEEEEEEEEccc
Confidence 5688888766666667788877776433 4899999998643
No 90
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=92.81 E-value=2.1 Score=51.20 Aligned_cols=71 Identities=8% Similarity=0.046 Sum_probs=50.5
Q ss_pred hhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHhhhcchh
Q 044944 298 TSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSF--FGISFIKASCLAFIMCCRGIP 369 (759)
Q Consensus 298 ~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~--~~~~~~~~~~lgl~m~~kG~v 369 (759)
+..+.+++-....|++++...+... |..+..+++.+...-++.+.+.+++ .++++..++.+|.+++|-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~-wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKH-WVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 3667778888889999999887655 5444444444444555555555554 499999999999999987754
No 91
>PRK04972 putative transporter; Provisional
Probab=92.52 E-value=0.95 Score=52.80 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHH-HcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHH--
Q 044944 23 VVIFLSTRAIYFL-LRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLI-- 99 (759)
Q Consensus 23 ~lil~~~~l~~~l-~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l-- 99 (759)
.+.+.+..+++.+ ++++++-...|-+++|+++|-.... + | ..+.++|+.+|+|.+|++.-+..+
T Consensus 18 f~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~-~-----~-------~~~~~~gl~lF~~~vG~~~Gp~F~~~ 84 (558)
T PRK04972 18 FVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS-I-----N-------TDALNLGFMLFIFCVGVEAGPNFFSI 84 (558)
T ss_pred HHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC-C-----C-------hHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3334444444433 2446677777999999999964322 1 1 124589999999999999988754
Q ss_pred -HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHH
Q 044944 100 -KHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLK 163 (759)
Q Consensus 100 -~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~ 163 (759)
|+.+.+...+++...+++.+++..++++++.... ...=..+-+.|++|.+.....
T Consensus 85 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 85 FFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIG---------LTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---------HHHHHhhccccCcHHHHHHHH
Confidence 5556666677777777777777776666544321 122223446667777766654
No 92
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.44 E-value=1.4 Score=51.14 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCch-hHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHH
Q 044944 252 ICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLG-TQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELI 330 (759)
Q Consensus 252 l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~-~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i 330 (759)
++.+.....+++.+++++.++-.++|+++...+... -.+.. + ....+++|......|+++|...+... +..+..+
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~~-~~~i~~l 82 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELREN-FRPIALI 82 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHH
Confidence 334444455666677777777777777766321111 00111 1 12457888888899999999988765 3223333
Q ss_pred HHHHHHH-HHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhH
Q 044944 331 MVMSYIG-KFTGVILSSSFFGISFIKASCLAFIMCCRGIPEI 371 (759)
Q Consensus 331 ~~~~~~~-K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l 371 (759)
.+...+. -.+.++...+..++|+..++.+|.++++-..+..
T Consensus 83 a~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 83 AFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 3333322 3333334444679999999999999999876553
No 93
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=92.32 E-value=19 Score=38.93 Aligned_cols=125 Identities=18% Similarity=0.068 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc--hh
Q 044944 249 ISIICIVLGVGFVGTCFGQ--GSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES--ST 324 (759)
Q Consensus 249 ~~~l~~~l~~~~~~~~~G~--~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~--~~ 324 (759)
...+......+++.+.+++ ..++|+++.+.++.-.....-.+-+.+ ..+..-+.=..+|.+++...+... .+
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~~~~~~ 233 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRELRRLL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 3444555666777777776 356777777766654311111111112 222333445678999987776543 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhccc
Q 044944 325 RKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDK 380 (759)
Q Consensus 325 ~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~ 380 (759)
...+...+..+..-.+.+++..++.++++.+++. + +.|-|.-|+.+.....+.
T Consensus 234 ~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L-a--~aPGGl~eM~l~A~~l~~ 286 (318)
T PF05145_consen 234 PPALLSTLLLLALCALFAWLLSRLTGIDFLTALL-A--TAPGGLAEMALIALALGA 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCccHHHHHHHHHHcCC
Confidence 3455555566667788888899999999876554 3 689999998877765543
No 94
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.26 E-value=1.1 Score=52.24 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=53.0
Q ss_pred cccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhh---hhHHHHHHH
Q 044944 37 RPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRR---RAVAIGFFG 113 (759)
Q Consensus 37 ~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~---~~~~ia~~~ 113 (759)
+.+++-.+.|-+++|+++|-.... + | +.+.++|+++|+|.+|++.-++.++.-.| +-..+++.-
T Consensus 31 ~~~~LG~~~gvLfvgl~~G~~g~~-i-----~-------~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~ 97 (562)
T TIGR03802 31 GSFQLGGVAGSLIVAVLIGQLGIQ-I-----D-------PGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF 97 (562)
T ss_pred eeeecchHHHHHHHHHHHHhcCCC-C-----C-------hHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH
Confidence 345677788999999999964321 1 1 23677999999999999999986654444 444444444
Q ss_pred HHHHHHHHHHHHHHHhh
Q 044944 114 CLIPLIFGMSSFRLIQQ 130 (759)
Q Consensus 114 ~~~p~~~~~~~~~~l~~ 130 (759)
+++.++++..++++++.
T Consensus 98 ~~~~~~~~~~~~~~~g~ 114 (562)
T TIGR03802 98 AVSGLITVYALAKIFGL 114 (562)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 44444455555555543
No 95
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.99 E-value=5.9 Score=38.05 Aligned_cols=120 Identities=21% Similarity=0.137 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhchh--hhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc--hhhHH
Q 044944 252 ICIVLGVGFVGTCFGQG--SFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES--STRKM 327 (759)
Q Consensus 252 l~~~l~~~~~~~~~G~~--~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~--~~~~~ 327 (759)
+......+++.+.+|++ .++|+++++.++.-.....-++-+.+ ..+-.-+.=..+|.+++...+... .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~----~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWL----LALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHH----HHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455566667777775 77888888877764321111122222 223334455778999998776644 34435
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhc
Q 044944 328 ELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWK 378 (759)
Q Consensus 328 ~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~ 378 (759)
+...+..+..-.+.+++..+..+++..+++ +| ..|-|.-++.......
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 555566667778888899999999998875 34 5788888877766533
No 96
>PRK10490 sensor protein KdpD; Provisional
Probab=91.91 E-value=0.86 Score=56.52 Aligned_cols=122 Identities=9% Similarity=0.072 Sum_probs=81.4
Q ss_pred cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCC
Q 044944 431 NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 431 elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 510 (759)
..|||+|+....+...+++-...++... ....+++|+.....+. ....+.+++.+.++ +.+...+
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~~------------~~~~~~~~l~~~~~-lA~~lGa 314 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARL--GSVWHAVYVETPRLHR------------LPEKKRRAILSALR-LAQELGA 314 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcCc------------CCHHHHHHHHHHHH-HHHHcCC
Confidence 6789999999999999998877766553 3688999975321110 11223355666664 5544332
Q ss_pred ceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCC-cceEEE
Q 044944 511 NIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAP-CSVGVL 581 (759)
Q Consensus 511 ~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~Ap-CsVgIl 581 (759)
. +... +.+++.+.|.+.|++++++.||||-+++..+ + .-+++.+++++++| -+|=|+
T Consensus 315 ~--~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 315 E--TATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred E--EEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEE
Confidence 2 2222 2378999999999999999999997654321 0 12367889999997 455553
No 97
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=91.66 E-value=3.1 Score=44.71 Aligned_cols=114 Identities=8% Similarity=0.051 Sum_probs=74.5
Q ss_pred hhhhhhhHHHHHHHhcccccccccccchhhHHHHH-HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHH
Q 044944 296 FFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELI-MVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMY 374 (759)
Q Consensus 296 ~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i-~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~ 374 (759)
.+.++++=|+-|.-+|..+|++-+....+. .++ -..+-+| +..+++.+...|++.+|+..+|.+=..-|-.++.+.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~--~ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWA--SITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHH--HHHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 345788899999999999999987666443 222 2233333 334556667789999999999998777787777666
Q ss_pred hhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 044944 375 CMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYDPSR 414 (759)
Q Consensus 375 ~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~~~ 414 (759)
+.. .-+.+.+-.-.+-.-++++ =.+-+|+++.+..++.
T Consensus 178 ~kL-Ap~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkE 215 (399)
T TIGR03136 178 LIL-AKDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKY 215 (399)
T ss_pred Hhh-hhHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHH
Confidence 542 2233333333333344454 6668889988775443
No 98
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=91.18 E-value=1.3 Score=46.87 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhh
Q 044944 298 TSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMW 377 (759)
Q Consensus 298 ~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~ 377 (759)
-++++=|+-|.-+|..+|++-+....+. .++-..+-++ +..+++.+...|++.+|+..+|.+=..-|-.++.+.+..
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 4678889999999999999987766553 2233333333 345666777789999999999998777787777766542
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044944 378 KDKKTITSQIFALLIANMVIVTSIASAVVGYLYDPS 413 (759)
Q Consensus 378 ~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~~ 413 (759)
....+.+-.-.+-.-++++ -.+-+|+++.+..++
T Consensus 144 -Ap~LlgpIaVaAYsYMaLv-PiiqPpimklLttkk 177 (360)
T PF03977_consen 144 -APHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKK 177 (360)
T ss_pred -hHHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHH
Confidence 2233333333333344444 667888998877544
No 99
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.61 E-value=6 Score=37.97 Aligned_cols=97 Identities=12% Similarity=0.204 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcccCCc--hhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHh
Q 044944 24 VIFLSTRAIYFLLRPFHQT--TVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKH 101 (759)
Q Consensus 24 lil~~~~l~~~l~~rl~~P--~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 101 (759)
+.+.++.+.+.+++++|+| ..+|-++++.++.- .+..+ .-+| ..+.+++.+++--.+|.+++.+.+++
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~-~~~P-------~~~~~~~qviiG~~iG~~f~~~~l~~ 71 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE-ITLP-------PWLLALAQVVIGILIGSRFTREVLAE 71 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc-CCCC-------HHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 3456777888999999988 66666666666552 22111 0112 24556667777778999999998876
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044944 102 IRRRAVAIGFFGCLIPLIFGMSSFRLIQQQ 131 (759)
Q Consensus 102 ~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~ 131 (759)
..+- +..++...++...++...++++.+.
T Consensus 72 ~~~~-~~~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 72 LKRL-WPAALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544 3334455555555666666665443
No 100
>PRK04972 putative transporter; Provisional
Probab=90.52 E-value=2.8 Score=48.92 Aligned_cols=127 Identities=13% Similarity=0.263 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcc-----cCCchhHHHHHHHHhcCcccccCcCC--CcCCCCchHHHHHHHHHHHHHHHHHHhhhcChh
Q 044944 25 IFLSTRAIYFLLRP-----FHQTTVMAQILGGAIIGPSILGDDTS--TLFPMRNRHILRTFAEFGMILHIFVLGVQIDLG 97 (759)
Q Consensus 25 il~~~~l~~~l~~r-----l~~P~iv~~IlaGiilGP~~lg~~~~--~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 97 (759)
-+++..+++.+-=+ +++-.--|.+++|+++|- ++...+ +-.| ......+.++|+.+|+..+|+.--.+
T Consensus 389 Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~ 463 (558)
T PRK04972 389 FFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGYIP---QGALNMVKEFGLMVFMAGVGLSAGSG 463 (558)
T ss_pred HHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCceeeC---HHHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 33344444444333 334445689999999984 444444 2344 45677899999999999999987765
Q ss_pred H---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHh
Q 044944 98 L---IKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKE 164 (759)
Q Consensus 98 ~---l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~e 164 (759)
. +++.+.+.+.++..-.++|.++++.+++++.+.. ...++=+++-+.|++|.+....+.
T Consensus 464 f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~--------~~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 464 INNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMN--------RALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHhCCCCCcHHHHHHHhh
Confidence 4 4556667777888888888888888886554432 122333355677888877776544
No 101
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=90.38 E-value=6 Score=42.76 Aligned_cols=138 Identities=17% Similarity=0.101 Sum_probs=84.2
Q ss_pred ccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHH
Q 044944 38 PFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIP 117 (759)
Q Consensus 38 rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p 117 (759)
-++.|.+++.+ .|+++...... .|.--.+.++.+++...-+-||..|+.++.+.+++..|......+.-.++-
T Consensus 179 ~~~nP~iia~i-~Gl~~~~~~i~------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~ 251 (321)
T TIGR00946 179 LIKFPPLWAPL-LSVILSLVGFK------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQ 251 (321)
T ss_pred HHhCCChHHHH-HHHHHHHHhhc------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHH
Confidence 35788888755 45777643221 344457889999999999999999999999888777677666655555443
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 044944 118 LIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMIL 194 (759)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~ 194 (759)
-++++.++..++.. ....-.....+.+..++.+.++.+.--.+ .+.+-+...++-+++++.+.+.
T Consensus 252 P~i~~~~~~~~~l~---------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~---~~~aa~~v~~sT~ls~~tlp~~ 316 (321)
T TIGR00946 252 PAVMAGISKLIGLR---------GLELSVAILQAALPGGAVAAVLATEYEVD---VELASTAVTLSTVLSLISLPLF 316 (321)
T ss_pred HHHHHHHHHHhCCC---------hHHHHHHHHHHcCChhhHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444321 12344455556656666666666543222 2445555555555555554443
No 102
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=89.82 E-value=4.1 Score=40.14 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHH-------HHHHHHh
Q 044944 19 LLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMI-------LHIFVLG 91 (759)
Q Consensus 19 ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~-------~llF~~G 91 (759)
+..+.++..++.++..-+.|=|++.----|+.|+++.... |.... .++....+..++.+|++ |-.-...
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg---G~kGlaDi~lfsGiglmGGaMlRDfAIvaTA 93 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG---GEKGLADIAIFGGFGLMGGAMLRDLAIVATA 93 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC---CccccchhhhhcchhhhhhHHHHHHHHHHHh
Confidence 3345555555555555555556666666677888775321 11111 01112223333333332 1223456
Q ss_pred hhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044944 92 VQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQK 132 (759)
Q Consensus 92 le~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~ 132 (759)
.|.|.+++||.+..-..--+.+..+||+.|..+++.+++..
T Consensus 94 f~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 94 FEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred hcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999998888888999999999999999997653
No 103
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=89.48 E-value=3 Score=44.32 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=56.6
Q ss_pred hHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 044944 44 VMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMS 123 (759)
Q Consensus 44 iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~ 123 (759)
.+--|+.|+++|+.. ... .+.++.=..+++.+..|..|.++|++.+.+.+.+.+.+++..+.+++.+++.
T Consensus 169 lilpILiGmilGNld-~~~---------~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNLD-PDM---------RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhccc-hhh---------HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 445566777777621 111 2223333334888999999999999999999999999999999999999888
Q ss_pred HHHHHh
Q 044944 124 SFRLIQ 129 (759)
Q Consensus 124 ~~~~l~ 129 (759)
++.+++
T Consensus 239 i~rllg 244 (312)
T PRK12460 239 ADRLVG 244 (312)
T ss_pred HHHHhC
Confidence 887774
No 104
>PRK03818 putative transporter; Validated
Probab=88.39 E-value=15 Score=42.82 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=71.5
Q ss_pred hHHHHHHHHhcCcccccCcCC--CcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHh----hhhhhHHHHHHHHHHH
Q 044944 44 VMAQILGGAIIGPSILGDDTS--TLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKH----IRRRAVAIGFFGCLIP 117 (759)
Q Consensus 44 iv~~IlaGiilGP~~lg~~~~--~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~~~p 117 (759)
.-|-+++|+++|- ++...+ +-.| ......+.++|+.+|+..+|++--...+.. .+.+...+++.-.++|
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYWFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCceeecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4678999999984 333332 2344 455678889999999999999987775533 3566667777778888
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHH-HHHhhccHHHHHHHH
Q 044944 118 LIFGMSSFRLIQQQKTRFDVESATGIAASV-AANSMTSLVVVTSVL 162 (759)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~iL 162 (759)
.++++.+++++.+.. ....+| .+-+.|++|.++...
T Consensus 478 ~~~~~~~~~~~~~~~---------~~~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 478 LLIVGILARMLAKMN---------YLTLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHHHHHHcCC---------HHHHHHHHhccCCCcHHHHHHh
Confidence 888888865543322 123344 556778888776653
No 105
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.38 E-value=14 Score=41.16 Aligned_cols=167 Identities=10% Similarity=0.081 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHcc--cCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChh
Q 044944 20 LQMVVIFLSTRAIYFLLRP--FHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLG 97 (759)
Q Consensus 20 l~l~lil~~~~l~~~l~~r--l~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 97 (759)
..+.+.+.+++.+...++. +.+|..++.+++|+++.... ..... . .-..+..+.++++++-+++-.+=..+++.
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~~--~-~~~~~~i~~I~~~sLdlfl~~AlmsL~L~ 297 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKKF--P-WVAERAVSVIGNVSLSLFLAIALMSLQLW 297 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhCc--c-ccchHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 3444555566666666664 77999999999999998632 22211 0 01245899999999999998888899999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhhhhccccchhhHHHHHHHHHHhhccHHH--HHHHHHhccccCChhHH
Q 044944 98 LIKHIRRRAVAIGFFGCLIPLIFGMSSF-RLIQQQKTRFDVESATGIAASVAANSMTSLVV--VTSVLKELNMLNSELGR 174 (759)
Q Consensus 98 ~l~~~~~~~~~ia~~~~~~p~~~~~~~~-~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~v--v~~iL~el~l~~s~~g~ 174 (759)
.+....-+.+.+.+.+.++..+....+. ..+++... .....+-..|..+-+|+.++ ...+-++.+-.+.-.=-
T Consensus 298 ~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd----aaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~i 373 (398)
T TIGR00210 298 ELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD----AAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIV 373 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH----HHHHhcccccccccchHHHHHHHHHHHhccCCCCcceeh
Confidence 9999999999999999988886665443 34444332 01122244555555444332 22233334433333323
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044944 175 LASSAAMVSDILSWITCMIL 194 (759)
Q Consensus 175 l~ls~a~i~D~~~~~ll~v~ 194 (759)
+=+-.+.+-|+....+....
T Consensus 374 vPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 374 VPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred hhhHHHHHHHHhhHHHHHHH
Confidence 34456777777776555444
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=88.37 E-value=3.6 Score=45.91 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=75.0
Q ss_pred HHHHHHHHHcccC-Cc-----hhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChh---H
Q 044944 28 STRAIYFLLRPFH-QT-----TVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLG---L 98 (759)
Q Consensus 28 ~~~l~~~l~~rl~-~P-----~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~---~ 98 (759)
+...++..+-|+| .- ...+-++.|.+++.+.+.... +.+.. ++|+++|.+.+|+|--+. .
T Consensus 15 vvl~lgl~~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~---------~~l~f--~lGL~LFVy~iGl~aGP~FFss 83 (544)
T COG2985 15 VVLALGLGFGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINT---------DMLHF--ELGLILFVYTIGLEAGPGFFSS 83 (544)
T ss_pred HHHHHHhhhceeEEeccccccchhhHhHHHHHhccccccccc---------chhhh--hhhhhHhhhhhhheecccHhHH
Confidence 3334455555655 21 234445555555554443322 22222 899999999999999887 4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHH-HHHhhccHHHHHH---HHHhccccCChhHH
Q 044944 99 IKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASV-AANSMTSLVVVTS---VLKELNMLNSELGR 174 (759)
Q Consensus 99 l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig-~~ls~Ts~~vv~~---iL~el~l~~s~~g~ 174 (759)
+||.+++-..+++.- ++.+...++.+..... . ...+..| .+-+.||.|.... +++|++....-.-+
T Consensus 84 ~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~---~---~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~~~~~~~ 153 (544)
T COG2985 84 FRKSGLNLNAFALLI----VIAALLLAWVLHKLFG---I---DLGLIAGMFSGALTSTPGLGAAQDILRELGAPSQALDQ 153 (544)
T ss_pred HHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC---C---CHHHhhhhhcccccCCchhHHHHHHHHhhccchhhhhh
Confidence 577777776665543 4444455555544432 1 1222222 2335566666554 56666543111222
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q 044944 175 --LASSAAMVSDILSWITCMI 193 (759)
Q Consensus 175 --l~ls~a~i~D~~~~~ll~v 193 (759)
+.-+.+..--++++++.+-
T Consensus 154 ~~~gYamaYp~Gil~ii~~~~ 174 (544)
T COG2985 154 MGMGYALAYPIGILGIILGAW 174 (544)
T ss_pred hhhhhhhhhhHHHHHHHHHHH
Confidence 2233334445555555443
No 107
>TIGR00930 2a30 K-Cl cotransporter.
Probab=88.12 E-value=81 Score=39.52 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCc-cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHH
Q 044944 428 KQN-NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLER 506 (759)
Q Consensus 428 ~~~-elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 506 (759)
..+ ..++|+.+.+|++-+.+++++..+.+.+. -..+.|+++-+.+. ...+.++..+..+.+-+
T Consensus 571 ~knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~g---l~i~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~ 634 (953)
T TIGR00930 571 VKNWRPQCLVLTGPPVCRPALLDFASQFTKGKG---LMICGSVIQGPRLE-------------CVKEAQAAEAKIQTWLE 634 (953)
T ss_pred ccccCCeEEEEeCCCcCcHHHHHHHHHhccCCc---EEEEEEEecCchhh-------------hHHHHHHHHHHHHHHHH
Confidence 345 88999999999999999999999974432 45556887643211 00111122222222322
Q ss_pred hcCCceEEEEEEEEccCCChHHHHHHHHhhc-----CCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 507 SYHGNIVVQHFTTIAPYASMHDDVCTLALDK-----RAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 507 ~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~-----~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
. -+++.|..+.--+++.+.+.++..-. +.+.+++||...|+.+.. +.. ..+-++.+... ++...|.|+
T Consensus 635 ~----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~-~~~-~~y~~~i~~a~-~~~~~v~i~ 707 (953)
T TIGR00930 635 K----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEP-RAW-ETYIGIIHDAF-DAHLAVVVV 707 (953)
T ss_pred H----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccc-hhH-HHHHHHHHHHH-HcCCcEEEE
Confidence 2 22344444444579999999998775 589999999998875432 111 23334444433 455555454
No 108
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.92 E-value=32 Score=34.87 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=72.2
Q ss_pred hhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhc
Q 044944 287 GTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCR 366 (759)
Q Consensus 287 ~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~k 366 (759)
++.+..-+++-+-.+-.|+| =+.+.+.. .|..+..-++++.+.-++.+++.++++|.+.. +.. .+.||
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~-~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~--Sl~Pk 128 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLIKR-HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LIL--SLLPK 128 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHH--Hhccc
Confidence 34455555555556666666 13333433 46666777777888888999999999998854 333 46899
Q ss_pred chhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHH-HHH
Q 044944 367 GIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAV-VGY 408 (759)
Q Consensus 367 G~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl-v~~ 408 (759)
....-+...+..+.|-+.+-+-..++++-++ ..+.+|. .++
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~-Gavlg~~llk~ 170 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGIL-GAVLGPLLLKL 170 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9998888888888887766555555555555 4555554 444
No 109
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=85.28 E-value=38 Score=34.71 Aligned_cols=108 Identities=15% Similarity=0.027 Sum_probs=65.8
Q ss_pred hHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcc
Q 044944 288 TQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRG 367 (759)
Q Consensus 288 ~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG 367 (759)
+-+..-+.+-+-.+-.|+| =+...+... |..+..-++++.+.-+++++..++++|.+.. . ...|.||.
T Consensus 65 ~~l~~lLgPAtVALAvPLY-------~q~~~lk~~-~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~--~~Sl~pKS 132 (232)
T PRK04288 65 DIISFFLEPATIAFAIPLY-------KKRDVLKKY-WWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--V--MASMLPQA 132 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHhhHh
Confidence 3344445555555666665 123334333 5555666667777788888899999998863 3 33468999
Q ss_pred hhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHH-HHH
Q 044944 368 IPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAV-VGY 408 (759)
Q Consensus 368 ~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl-v~~ 408 (759)
...-+...+..+.|-+..-.-..++++-++ ..+.+|. .++
T Consensus 133 VTtPIAm~is~~iGG~psLtA~~ViitGi~-Gai~g~~llk~ 173 (232)
T PRK04288 133 ATTAIALPVSAGIGGIKEITSFAVIFNAVI-IYALGAKFLKL 173 (232)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 888888888777776544444444444444 4445554 444
No 110
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=84.78 E-value=11 Score=41.65 Aligned_cols=109 Identities=12% Similarity=0.191 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHc--ccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChh
Q 044944 20 LQMVVIFLSTRAIYFLLR--PFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLG 97 (759)
Q Consensus 20 l~l~lil~~~~l~~~l~~--rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 97 (759)
..+.+.+.++..+...++ .+.+|..++-+++|+++... ++.... . .-..+..+.++++++-+++..+=..+++.
T Consensus 224 ~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~-~~~~~~--~-~id~~~i~~I~~~sL~~fl~~almsl~l~ 299 (368)
T PF03616_consen 224 ALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNI-LDKTGK--Y-KIDRKTIDRISGISLDLFLAMALMSLKLW 299 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHH-HHHhCc--c-cCCHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344444455555555555 46789999999999999753 222211 0 01367789999999999998888899999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhh
Q 044944 98 LIKHIRRRAVAIGFFGCLIPLIFGMS-SFRLIQQQK 132 (759)
Q Consensus 98 ~l~~~~~~~~~ia~~~~~~p~~~~~~-~~~~l~~~~ 132 (759)
.+.+..-+.+.+-+.+.++..+.... ....+++++
T Consensus 300 ~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdy 335 (368)
T PF03616_consen 300 VLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDY 335 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh
Confidence 99999888887777777776665543 344555554
No 111
>PRK10490 sensor protein KdpD; Provisional
Probab=84.05 E-value=5.5 Score=49.50 Aligned_cols=120 Identities=9% Similarity=0.192 Sum_probs=72.5
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeC
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVK 679 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~ 679 (759)
.||+|..-|+|..+-.++.|.|||+.-++.++++++.+++. .....+..+++. +.+ ++.++. +.. +.+...+
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~---~~~~~~~~~~l~-~~~-~lA~~l-Ga~--~~~~~~~ 322 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRL---HRLPEKKRRAIL-SAL-RLAQEL-GAE--TATLSDP 322 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCc---CcCCHHHHHHHH-HHH-HHHHHc-CCE--EEEEeCC
Confidence 48999999999999999999999999999999999975521 111111111222 122 233333 222 2233333
Q ss_pred ChhhHHHHHHhhc--cCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEE
Q 044944 680 DGIGTTRVIQTLT--ENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVV 742 (759)
Q Consensus 680 ~~~e~~~~i~~~~--~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 742 (759)
| +.+.|-+.+ ++.+.+|+|++.+. -| + --|-+-|-|.-..-.--|.||
T Consensus 323 d---va~~i~~~A~~~~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 323 A---EEKAVLRYAREHNLGKIIIGRRASR---------RW--W-RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred C---HHHHHHHHHHHhCCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhCCCCCEEEE
Confidence 3 333333332 46899999998753 25 1 135677777754222267777
No 112
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=83.87 E-value=81 Score=35.54 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=28.1
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHH
Q 044944 155 LVVVTSVLKELNMLNSELGRLASSAAMVSDILSWIT 190 (759)
Q Consensus 155 ~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~l 190 (759)
.|++....+.+|+.+.+.--.+.+++.+.|..+..+
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 488888888888765544467889999999988765
No 113
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=83.29 E-value=7.7 Score=43.81 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=51.9
Q ss_pred hhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHhhhcchhhHH
Q 044944 300 GFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF--GISFIKASCLAFIMCCRGIPEIA 372 (759)
Q Consensus 300 ~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~v~l~ 372 (759)
.+++|.-....|+++|...+... |..+..+.....+...++.....++. ++|+..++.+|.+++|-.-+.+.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~-~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRV-WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 56777777778999999988766 43444444555555566665666655 89999999999999988766654
No 114
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=82.34 E-value=27 Score=37.78 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCch--hHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcCh
Q 044944 19 LLQMVVIFLSTRAIYFLLRPFHQTT--VMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDL 96 (759)
Q Consensus 19 ll~l~lil~~~~l~~~l~~rl~~P~--iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 96 (759)
..++.+++.++...+++++|+|+|. ++|-++++.++.-.. ..+ .-+| .. +..++.+++--.+|.++|.
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~--~~~-~~~P----~~---l~~~aqv~iG~~iG~~f~~ 223 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG--GPS-FSLP----PW---LVNAAQVLIGASIGSRFTR 223 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--CCC-CCCC----HH---HHHHHHHHHHHHHHccccH
Confidence 3456667777889999999999864 566666666555331 111 1122 33 4445555566688999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 97 GLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQ 130 (759)
Q Consensus 97 ~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~ 130 (759)
+.+++..| .+..++...+.-+.++...++.+..
T Consensus 224 ~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 224 ETLRELRR-LLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876554 4444555555555555555555543
No 115
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=82.29 E-value=0.43 Score=52.86 Aligned_cols=112 Identities=17% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCch--hHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHH
Q 044944 253 CIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLG--TQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELI 330 (759)
Q Consensus 253 ~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~--~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i 330 (759)
+..+....+.+.++++..+|-.++|+++.... ++ +.-.+.++.+ ..+.+++.....|.++|...+... +......
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~-~~~~~~~ 82 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN-WRRALAL 82 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc-ccccccc
Confidence 33444555788899999999999999998853 22 1113445555 777888888889999999988655 3333344
Q ss_pred HHHHHHHHHHH-HHHHHH---hhCCChHHHHHHHHHhhhcc
Q 044944 331 MVMSYIGKFTG-VILSSS---FFGISFIKASCLAFIMCCRG 367 (759)
Q Consensus 331 ~~~~~~~K~i~-~~l~~~---~~~~~~~~~~~lgl~m~~kG 367 (759)
.+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -------------------------------TTHHHHTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 44444444444 444443 47889999999988776554
No 116
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=81.93 E-value=6.9 Score=41.52 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=70.3
Q ss_pred hhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCC------ChHHHHHHHHHhhhcchh
Q 044944 296 FFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGI------SFIKASCLAFIMCCRGIP 369 (759)
Q Consensus 296 ~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~------~~~~~~~lgl~m~~kG~v 369 (759)
.+-++++=|+-|.-+|..+|++-+....+ ..++-..+-++ +..+++.+...|+ +.+|+..+|.+=..-|-.
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP~--~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt 135 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANPR--TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPT 135 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhChH--HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCch
Confidence 34578899999999999999988765543 22333333333 3344566666777 779999998876777777
Q ss_pred hHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044944 370 EIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYDPS 413 (759)
Q Consensus 370 ~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~~ 413 (759)
++.+.+.. ..+.+.+-.-.+-.-++++ -.+-+|+++.+..++
T Consensus 136 ~If~s~~l-ap~Llg~IaVAAYsYMaLv-PiiqPpimklLttkk 177 (354)
T TIGR01109 136 AIYLSGKL-APELLAAIAVAAYSYMALV-PIIQPPIMKALTSEK 177 (354)
T ss_pred hhhhHhhh-hhHHHHHHHHHHHHHHHHH-hcccchHHHhhcChH
Confidence 76665432 1223333222233334444 566888888876543
No 117
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=80.90 E-value=11 Score=41.61 Aligned_cols=109 Identities=20% Similarity=0.280 Sum_probs=73.8
Q ss_pred hhHHHHHhhhhcCC--cceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHh-hCCCeEEEEEEeeeC
Q 044944 562 PIRALNGNILDKAP--CSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMV-EHPNISLTVVWFVSS 638 (759)
Q Consensus 562 ~~~~~n~~vl~~Ap--CsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma-~~~~v~ltv~r~~~~ 638 (759)
...++|++|+--+| |.- |+-++ ....+||++|-||-|.---..++.+.+ +|+.+.|-=+-|-.+
T Consensus 224 l~ds~k~rvl~i~~rl~~~-i~~~c------------~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~ 290 (520)
T KOG0573|consen 224 LRDSLKDRVLVIPPRLCAN-ILLRC------------IHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNP 290 (520)
T ss_pred HHHHHhhhhhccChhHhhh-ccccc------------cccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCC
Confidence 45567888877776 111 11111 112399999999999999999999987 677777777777533
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHH
Q 044944 639 DPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRV 687 (759)
Q Consensus 639 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~ 687 (759)
. ...+++-++|+....-++|++..+.+....+.|+-| +.+|..+.
T Consensus 291 e---~~~~~~~PDRktgr~g~~eL~s~~P~R~~nlV~vnV-~~~El~~~ 335 (520)
T KOG0573|consen 291 E---GSKEQNVPDRKTGRRGLEELQSLYPKRSWNLVEVNV-TYEELQKA 335 (520)
T ss_pred C---cccccCCccHHHHHHHHHHHHHhCCcceEEEEeccC-CHHHHHHH
Confidence 1 123334588898889999999887556677878777 34454443
No 118
>COG2985 Predicted permease [General function prediction only]
Probab=80.52 E-value=12 Score=41.98 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=71.1
Q ss_pred hhHHHHHHHHhcCcccccCcCC--CcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhH---HHhhhhhhHHHHHHHHHHH
Q 044944 43 TVMAQILGGAIIGPSILGDDTS--TLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGL---IKHIRRRAVAIGFFGCLIP 117 (759)
Q Consensus 43 ~iv~~IlaGiilGP~~lg~~~~--~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~~~p 117 (759)
..-|.+++|+++| .+|.+.+ |..| ......+.++|+++||=-+|++---+. +-..+-.....++.-.++|
T Consensus 397 ~aGGpLivaLiLG--~ig~iGpl~w~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp 471 (544)
T COG2985 397 NAGGPLIVALILG--FIGAIGPLTWFMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVP 471 (544)
T ss_pred ccccHHHHHHHHH--HhcccCceEEEcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHH
Confidence 4567888889988 4666666 5666 456778899999888777777654332 2334445556666667788
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHH
Q 044944 118 LIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSV 161 (759)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~i 161 (759)
.+.++.++.++.+..+ ..++=+++-+.|++|.++-.
T Consensus 472 ~i~~~llg~~v~kmn~--------~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 472 VIIVFLLGRYVLKMNW--------LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHhccH--------HHHhhHHhcCCCChHHHHHH
Confidence 8888888877755431 23444466688998876654
No 119
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=80.00 E-value=3.8 Score=44.04 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=72.4
Q ss_pred hhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh------hCCChHHHHHHHHHhhhcchhh
Q 044944 297 FTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSF------FGISFIKASCLAFIMCCRGIPE 370 (759)
Q Consensus 297 ~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~m~~kG~v~ 370 (759)
+.++++=|+-|.-+|..+|+.-+..... .+++-..+-++-+... +.+.. .|++.+|+..+|.+=..-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~--~~llGaAAQ~GIF~t~-~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPR--TLLLGAAAQFGIFATV-LGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHH--HHHHHHHHHhhHHHHH-HHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 3567888999999999999988765532 2222223333333222 22332 3799999999998777778777
Q ss_pred HHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccchhhcccc
Q 044944 371 IAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYDPS-RRYKLDVRRA 423 (759)
Q Consensus 371 l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~~-~~~~~~~~r~ 423 (759)
+.+.+..- -+.+.+-.-.+-..|+++ -.+-+|+++.+..++ |+..-++.|+
T Consensus 208 IfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15475 208 IYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETERKIRMVQLRT 259 (433)
T ss_pred HHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 76655421 223333222333344454 666888988876543 3333344444
No 120
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=79.90 E-value=3.6 Score=44.20 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=72.2
Q ss_pred hhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh------hCCChHHHHHHHHHhhhcchhh
Q 044944 297 FTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSF------FGISFIKASCLAFIMCCRGIPE 370 (759)
Q Consensus 297 ~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~m~~kG~v~ 370 (759)
+.++++=|+-|.-+|..+|+.-+..... .+++-..+-++-+... +.+.. .|++.+|+..+|.+=..-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~--~~llGaAAQ~GIF~t~-~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPR--TLLLGAAAQFGIFATV-LGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHH--HHHHHHHHHhhHHHHH-HHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 3467888999999999999988765532 2222223333333222 22332 3799999999998777778777
Q ss_pred HHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccchhhcccc
Q 044944 371 IAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYDPS-RRYKLDVRRA 423 (759)
Q Consensus 371 l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~~-~~~~~~~~r~ 423 (759)
+.+.+..- -+.+.+-.-.+-..|+++ -.+-+|+++.+..++ |+..-++.|+
T Consensus 208 IfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15477 208 IYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRT 259 (433)
T ss_pred HHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 76655421 223333222333344444 666888888876543 3333344444
No 121
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=79.88 E-value=3.6 Score=44.19 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=72.3
Q ss_pred hhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh------hCCChHHHHHHHHHhhhcchhh
Q 044944 297 FTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSF------FGISFIKASCLAFIMCCRGIPE 370 (759)
Q Consensus 297 ~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~m~~kG~v~ 370 (759)
+.++++=|+-|.-+|..+|+.-+..... .+++-..+-++-+... +.+.. .|++.+|+..+|.+=..-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~--~~llGaAAQ~GIF~t~-~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPR--TLLLGAAAQFGIFATV-LGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHH--HHHHHHHHHhhHHHHH-HHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 3467888999999999999988765532 2222223333333222 22332 3799999999998777778777
Q ss_pred HHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccchhhcccc
Q 044944 371 IAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYDPS-RRYKLDVRRA 423 (759)
Q Consensus 371 l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~~-~~~~~~~~r~ 423 (759)
+.+.+..- -+.+.+-.-.+-..|+++ -.+-+|+++.+..++ |+..-++.|+
T Consensus 208 IfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~ 259 (433)
T PRK15476 208 IYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRT 259 (433)
T ss_pred HHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence 76655421 223333222333344444 666888888876543 3333344444
No 122
>PRK12342 hypothetical protein; Provisional
Probab=78.81 E-value=6.3 Score=41.05 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=53.5
Q ss_pred cCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHH-HHHHhhhhcCCCCeEEEE-EE--eCChhh
Q 044944 608 GGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNH-AFDEFKDSVVTKKITLRV-EI--VKDGIG 683 (759)
Q Consensus 608 GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~v~~~e-~~--v~~~~e 683 (759)
=.|.|+-|++.|.|+.+ .+.++|++.+=+++ .++. ++.+.-.. +-++..-.+ .. -.|.-.
T Consensus 33 iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~--------------a~~~~l~r~alam-GaD~avli~d~~~~g~D~~a 96 (254)
T PRK12342 33 ISQFDLNAIEAASQLAT-DGDEIAALTVGGSL--------------LQNSKVRKDVLSR-GPHSLYLVQDAQLEHALPLD 96 (254)
T ss_pred CChhhHHHHHHHHHHhh-cCCEEEEEEeCCCh--------------HhHHHHHHHHHHc-CCCEEEEEecCccCCCCHHH
Confidence 37999999999999995 57899999986541 1222 33332222 223322222 11 123333
Q ss_pred HHHHHHhhc--cCCcEEEEccCCCCC-----ccccccCCcC
Q 044944 684 TTRVIQTLT--ENFDLFIVGKNHDPC-----SKVTLGLSEW 717 (759)
Q Consensus 684 ~~~~i~~~~--~~~DL~iVGr~~~~~-----~~~~~gl~~w 717 (759)
|..++...- .+|||++-|+..... .++++++.+|
T Consensus 97 ta~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 97 TAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 333332221 259999999997544 4555555555
No 123
>COG2431 Predicted membrane protein [Function unknown]
Probab=78.59 E-value=44 Score=34.85 Aligned_cols=79 Identities=20% Similarity=0.337 Sum_probs=51.4
Q ss_pred hhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcC---hhHHH-hhhhhhHHHHHHHHHHHH
Q 044944 43 TVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQID---LGLIK-HIRRRAVAIGFFGCLIPL 118 (759)
Q Consensus 43 ~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~~p~ 118 (759)
++.+..+.|+++|-..-...+ ..+...+..+.+++|.+|.++. ...-+ .--|+.+..++...+-..
T Consensus 108 k~~~~vl~g~~~G~l~~~~~~----------~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilssl 177 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFLN----------FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLSSL 177 (297)
T ss_pred HHHHHHHHHHHHHHHhccccc----------CchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHHHH
Confidence 677788888888853322221 1456778889999999999987 22111 123677777777766666
Q ss_pred HHHHHHHHHHhhh
Q 044944 119 IFGMSSFRLIQQQ 131 (759)
Q Consensus 119 ~~~~~~~~~l~~~ 131 (759)
+-|...+..+..+
T Consensus 178 iGG~iaa~~l~lp 190 (297)
T COG2431 178 IGGLIAAFLLDLP 190 (297)
T ss_pred HHHHHHHHHHhcc
Confidence 6666666666533
No 124
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=78.36 E-value=7.9 Score=40.67 Aligned_cols=118 Identities=11% Similarity=0.102 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCC-c--hhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc-h
Q 044944 248 FISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPP-L--GTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES-S 323 (759)
Q Consensus 248 ~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~-~--~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~-~ 323 (759)
....+.++|+.+.+++.+.++|.+|=.++|.+.....| + ...+...+..+ =..+....+|+++.+.++... .
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAel----GViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAEL----GVILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHh----hHHHHHHhcchheeHHHHhhHHH
Confidence 34556778899999999999999999999999875433 2 34455555555 234455578999988876544 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhH
Q 044944 324 TRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEI 371 (759)
Q Consensus 324 ~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l 371 (759)
|..-..+. -+..-..-.+..++..|+++-..+..|+.++.-.++-+
T Consensus 87 iAipgAl~--qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvl 132 (408)
T COG4651 87 IAIPGALA--QIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVL 132 (408)
T ss_pred HhcchHHH--HHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHH
Confidence 32211111 11111112233455678888888888888777665543
No 125
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=78.22 E-value=12 Score=36.92 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=32.3
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeee
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVS 637 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~ 637 (759)
||++.|-||+|+--++.++.+.++..+.+++++++-.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5889999999999999999998877777888888853
No 126
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=78.02 E-value=15 Score=40.12 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc--cCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 044944 17 VLLLQMVVIFLSTRAIYFLLRP--FHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQI 94 (759)
Q Consensus 17 ~~ll~l~lil~~~~l~~~l~~r--l~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 94 (759)
..+.-+++.+.++..+..+++. +.+|..++.+.+|+++... +..... +.-..+..+.++++++-+++=.+=+.+
T Consensus 222 ~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni-~~~~~~---~~v~~~~v~~ig~vsL~lflamALmSl 297 (404)
T COG0786 222 ETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNI-LDLLKK---YRVFRRAVDVIGNVSLSLFLAMALMSL 297 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhH-HHHhcc---ccccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555555666666666664 5699999999999999753 222221 111367889999999999988877788
Q ss_pred ChhHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhh
Q 044944 95 DLGLIKHIRRRAVAIGFFGCLIPLIFGMS-SFRLIQQQK 132 (759)
Q Consensus 95 d~~~l~~~~~~~~~ia~~~~~~p~~~~~~-~~~~l~~~~ 132 (759)
.+-.+-.-+-+.+.+-..+.++..+..+. +...++..+
T Consensus 298 kLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~Y 336 (404)
T COG0786 298 KLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNY 336 (404)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 88888877777777777777666555543 334555544
No 127
>PRK10711 hypothetical protein; Provisional
Probab=77.66 E-value=69 Score=32.83 Aligned_cols=80 Identities=5% Similarity=-0.041 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHH
Q 044944 324 TRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIAS 403 (759)
Q Consensus 324 ~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~ 403 (759)
|..+..-++++.+.-++++++.++.+|.+.. +. ..|.||....-+...+..+.|-+..-.-..++++-++ ..+.+
T Consensus 88 ~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~--~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~-Ga~~g 162 (231)
T PRK10711 88 WKSIISICFIGSVVAMVTGTAVALWMGATPE--IA--ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGIL-GAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHHHH
Confidence 4445555667777788888899999998754 33 3468999888887777777766543333333344444 44455
Q ss_pred HH-HHH
Q 044944 404 AV-VGY 408 (759)
Q Consensus 404 pl-v~~ 408 (759)
|. .++
T Consensus 163 ~~llk~ 168 (231)
T PRK10711 163 HTLLNA 168 (231)
T ss_pred HHHHHH
Confidence 54 444
No 128
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=77.09 E-value=5.2 Score=41.72 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=48.8
Q ss_pred CcChHHHHHHHHHHhhCC-CeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEE-E--EeCChhhH
Q 044944 609 GADDREALAYSRLMVEHP-NISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRV-E--IVKDGIGT 684 (759)
Q Consensus 609 G~ddreAL~~a~rma~~~-~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e-~--~v~~~~e~ 684 (759)
.|.|+-|++.|.|+.++. +.++|++.+=+++ .-+++.+++--.. +-++....+ . ...|...|
T Consensus 35 N~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~-------------a~~~~~lr~aLAm-GaD~avli~d~~~~g~D~~~t 100 (256)
T PRK03359 35 SQYDLNAIEAACQLKQQAAEAQVTALSVGGKA-------------LTNAKGRKDVLSR-GPDELIVVIDDQFEQALPQQT 100 (256)
T ss_pred ChhhHHHHHHHHHHhhhcCCCEEEEEEECCcc-------------hhhHHHHHHHHHc-CCCEEEEEecCcccCcCHHHH
Confidence 699999999999999975 4899999996542 0112333332221 223333222 1 11244444
Q ss_pred HHHHHhhc--cCCcEEEEccCCCC
Q 044944 685 TRVIQTLT--ENFDLFIVGKNHDP 706 (759)
Q Consensus 685 ~~~i~~~~--~~~DL~iVGr~~~~ 706 (759)
..+|.+.- .+|||++-|+....
T Consensus 101 A~~La~ai~~~~~DLVl~G~~s~D 124 (256)
T PRK03359 101 ASALAAAAQKAGFDLILCGDGSSD 124 (256)
T ss_pred HHHHHHHHHHhCCCEEEEcCcccc
Confidence 44432221 25999999998743
No 129
>PRK09903 putative transporter YfdV; Provisional
Probab=76.99 E-value=47 Score=35.73 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=65.8
Q ss_pred cCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHH-HHH
Q 044944 39 FHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGC-LIP 117 (759)
Q Consensus 39 l~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~-~~p 117 (759)
++-|.+++.++ |+++. .+|.- .|+.-.+.++.+++...-+-||..|+.+....++.. ++.+...+.-. +.|
T Consensus 171 ~~nP~iia~~~-gl~~~--l~~i~----lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P 242 (314)
T PRK09903 171 AKEPVVWAPVL-ATILV--LVGVK----IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMP 242 (314)
T ss_pred HhchHHHHHHH-HHHHH--HcCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHH
Confidence 45687777654 45554 23321 345567889999999999999999999877655433 33333333333 345
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhcc
Q 044944 118 LIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELN 166 (759)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ 166 (759)
++. ....+.++. + ....-....++.+..++.+.++.+.-
T Consensus 243 ~i~-~~~~~~~~l--~-------~~~~~v~vl~aa~P~a~~~~i~A~~y 281 (314)
T PRK09903 243 LAL-LLVGMACHL--N-------SEHLQMMVLAGALPPAFSGIIIASRF 281 (314)
T ss_pred HHH-HHHHHHcCC--C-------cHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 544 333333221 1 23445566667777777777776643
No 130
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.80 E-value=17 Score=40.20 Aligned_cols=134 Identities=15% Similarity=0.043 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhccc-ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 271 LGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIR-WEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF 349 (759)
Q Consensus 271 lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~-~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~ 349 (759)
+...++|....+..-+..+-.+.+..++..+++|.+....=.+ .+...+. .++.+.+..++..+.=++.+++..+++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL--SLWFIPVFAFIIFILGLLLGFLLSRLF 87 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555555554456677788899999999999986554444 3333332 233344433444444456666777777
Q ss_pred CCChHHHH--HHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044944 350 GISFIKAS--CLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLYD 411 (759)
Q Consensus 350 ~~~~~~~~--~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~ 411 (759)
+.+.+++. .++...+.-|.+.+-+....+.. +.....++..++...+.-++...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 88 RLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred CCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 77766543 33333445555555554433322 33333333333334444444444443
No 131
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=74.16 E-value=1.1e+02 Score=31.32 Aligned_cols=80 Identities=9% Similarity=0.074 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHH
Q 044944 324 TRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIAS 403 (759)
Q Consensus 324 ~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~ 403 (759)
|..+...++++.+.-+..+++.++.+|.+. .... .+.||....-+...+..+.|-...-.-...+++-++ ..+.+
T Consensus 87 ~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~-Ga~~g 161 (226)
T TIGR00659 87 WKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLL-GTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHH-HHHHH
Confidence 444455555666677788888899999874 3333 468999888777777777765433333333344444 44444
Q ss_pred H-HHHH
Q 044944 404 A-VVGY 408 (759)
Q Consensus 404 p-lv~~ 408 (759)
| +.++
T Consensus 162 ~~ll~~ 167 (226)
T TIGR00659 162 PMVLRY 167 (226)
T ss_pred HHHHHH
Confidence 4 4444
No 132
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=74.13 E-value=37 Score=36.93 Aligned_cols=94 Identities=18% Similarity=0.061 Sum_probs=58.5
Q ss_pred HHHHHccc-CCchhHHHHHHHHhcCcccccCcCCCcCCCCchH---HHH-HHHHHHHHHHHHHHhhh-cChhHHHhhh-h
Q 044944 32 IYFLLRPF-HQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRH---ILR-TFAEFGMILHIFVLGVQ-IDLGLIKHIR-R 104 (759)
Q Consensus 32 ~~~l~~rl-~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~---~l~-~l~~lgl~~llF~~Gle-~d~~~l~~~~-~ 104 (759)
++.+++.+ ++|..+..|+.|+++. .+|.+++ +..+ .+. ++..--...+++-.|+. +|++++.+.. .
T Consensus 194 ~g~l~~~~~~Ih~~v~mII~~vi~k--~~gllp~-----~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~ 266 (347)
T TIGR00783 194 AGGLLKSFPGIPAYAFMILIAAALK--AFGLVPK-----EIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW 266 (347)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHH--HhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch
Confidence 33444444 6899999999999997 4566643 2222 122 33333333444446876 8999998877 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044944 105 RAVAIGFFGCLIPLIFGMSSFRLIQQQK 132 (759)
Q Consensus 105 ~~~~ia~~~~~~p~~~~~~~~~~l~~~~ 132 (759)
+.+.+.+.+++.-.+.++.++.+++.++
T Consensus 267 ~~vviiv~~Vlg~ii~s~lvGKllG~YP 294 (347)
T TIGR00783 267 QFVVICLSVVVAMILGGAFLGKLMGMYP 294 (347)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHhCCCh
Confidence 5555555556555666667778777654
No 133
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=74.01 E-value=16 Score=43.77 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=75.6
Q ss_pred cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCC
Q 044944 431 NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 431 elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 510 (759)
..||++|+........+++-+.-++..-+ ...+++|+..-..+.. ...+.+++...++- .++..+
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~--a~~~av~v~~~~~~~~------------~~~~~~~l~~~~~L-ae~lGa 312 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLH--AKWTAVYVETPELHRL------------SEKEARRLHENLRL-AEELGA 312 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhC--CCeEEEEEeccccccc------------cHHHHHHHHHHHHH-HHHhCC
Confidence 68999999998888888887766554433 5677888754221110 11223444444443 333222
Q ss_pred ceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCc
Q 044944 511 NIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPC 576 (759)
Q Consensus 511 ~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApC 576 (759)
+..+..+ .++.+.|.+.|++.++.-||+|-+++.++.-. ..+++.+++++++|-
T Consensus 313 ----e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~------~~~~l~~~L~~~~~~ 366 (890)
T COG2205 313 ----EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRL------FKGSLADRLAREAPG 366 (890)
T ss_pred ----eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHH------hcccHHHHHHhcCCC
Confidence 2334444 79999999999999999999997665433211 125678888888754
No 134
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=73.75 E-value=29 Score=33.96 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=55.6
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeC-
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVK- 679 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~- 679 (759)
+|++.+-||+|+--.|.+..++.+..+.+++++++-..- ..+...+.+.++++.+++ .+.|.-+..+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~---------~~~s~~~~~~v~~~~~~~---~i~~~~~~~~~ 68 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGL---------REESDEEAEFVEEICEQL---GIPLYIVRIDE 68 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-ST---------SCCHHHHHHHHHHHHHHT---T-EEEEEE--C
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCC---------CcccchhHHHHHHHHHhc---CCceEEEEeee
Confidence 588999999999999999999999999999999996442 123345567788887765 2333322222
Q ss_pred ------ChhhHHH-----HHHhhc--cCCcEEEEccCCC
Q 044944 680 ------DGIGTTR-----VIQTLT--ENFDLFIVGKNHD 705 (759)
Q Consensus 680 ------~~~e~~~-----~i~~~~--~~~DL~iVGr~~~ 705 (759)
+-++... .+.+.+ .++|.++.|++.+
T Consensus 69 ~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 69 DRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp HCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred eecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 1112222 233443 3589999999854
No 135
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=73.68 E-value=5.4 Score=39.68 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHH---HHHHHH
Q 044944 327 MELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVI---VTSIAS 403 (759)
Q Consensus 327 ~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv---~t~i~~ 403 (759)
.+.+-+..+++-++++++.+++.++|++|+++++..+.=-..-...+.. ..+++.-++-.++-++ .+.+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~------~~~~~~G~iafl~n~~RE~~a~~~~ 131 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ------LYGPELGTIAFLSNLFREILAIILI 131 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh------hhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777889999999999999999999999988766444433333332 2233333333332221 255567
Q ss_pred HHHHH
Q 044944 404 AVVGY 408 (759)
Q Consensus 404 plv~~ 408 (759)
|++.+
T Consensus 132 P~~~r 136 (191)
T PF03956_consen 132 PLLAR 136 (191)
T ss_pred HHHHH
Confidence 77655
No 136
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=68.55 E-value=1.9e+02 Score=31.81 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=52.7
Q ss_pred hhhHHHHHHHhhcCCCCCch-----hHHHhHHhhhhhhhhHHHHHHHhcccccccccccc-hhhHHHHHHHHHHHHHHHH
Q 044944 268 GSFLGCFVFGLCLPDGPPLG-----TQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES-STRKMELIMVMSYIGKFTG 341 (759)
Q Consensus 268 ~~~lGafvaGl~i~~~~~~~-----~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~-~~~~~~~i~~~~~~~K~i~ 341 (759)
++.+=+.++|+++.-.++.. ..+.+-++.+ .....|+-.+.+|..+........ .+......++..++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 44444455555555433222 4555556665 778899999999998875433222 3333344466667777777
Q ss_pred HHHHHHhhCCChHH
Q 044944 342 VILSSSFFGISFIK 355 (759)
Q Consensus 342 ~~l~~~~~~~~~~~ 355 (759)
++...+..+++...
T Consensus 323 ~~~~~~~~~l~~~~ 336 (385)
T PF03547_consen 323 GIGIVFLLGLDGDM 336 (385)
T ss_pred HHHHHHHHCCCHHH
Confidence 77777777876543
No 137
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=67.88 E-value=17 Score=34.86 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=47.9
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEe-C--ChhhHH
Q 044944 609 GADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIV-K--DGIGTT 685 (759)
Q Consensus 609 G~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v-~--~~~e~~ 685 (759)
.+.|+|+|+.|+++++..+.+++++-+=+.. +.+ +.+.+...++.-+++...+--- . +.+...
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~~~-------------~~~-~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a 79 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGPAE-------------EAA-EALRKALAKYGADKVYHIDDPALAEYDPEAYA 79 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEETCC-------------CHH-HHHHHHHHSTTESEEEEEE-GGGTTC-HHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEecch-------------hhH-HHHhhhhhhcCCcEEEEecCccccccCHHHHH
Confidence 4889999999999999999999988774211 122 2233323333233444332111 1 233355
Q ss_pred HHHHhhc--cCCcEEEEccCCC
Q 044944 686 RVIQTLT--ENFDLFIVGKNHD 705 (759)
Q Consensus 686 ~~i~~~~--~~~DL~iVGr~~~ 705 (759)
+++.+.. .++|++++|....
T Consensus 80 ~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 80 DALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp HHHHHHHHHHT-SEEEEESSHH
T ss_pred HHHHHHHHhcCCCEEEEcCcCC
Confidence 5555543 3699999998753
No 138
>COG0679 Predicted permeases [General function prediction only]
Probab=67.61 E-value=1.8e+02 Score=31.22 Aligned_cols=136 Identities=10% Similarity=0.122 Sum_probs=81.2
Q ss_pred hhhhHHHHHHHhhcCCC-CCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 044944 267 QGSFLGCFVFGLCLPDG-PPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILS 345 (759)
Q Consensus 267 ~~~~lGafvaGl~i~~~-~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~ 345 (759)
.+|.+=|+++|+++... -++...+.+-++.+ .+...|+-.+..|+.++..................-.+...+.++..
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666631 23344556666666 78899999999999999854444334333334434577778888888
Q ss_pred HHhhCCChHHHHHHHHHh--hhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044944 346 SSFFGISFIKASCLAFIM--CCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGY 408 (759)
Q Consensus 346 ~~~~~~~~~~~~~lgl~m--~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~ 408 (759)
++.++++.-+. ....++ .|.+....+++. +.+.-.+...+.+.+++++ +.++.|.+.+
T Consensus 246 ~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~l-s~~t~p~~~~ 305 (311)
T COG0679 246 AKLLGLSGLAL-QVLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLL-SLLTLPLLIL 305 (311)
T ss_pred HHHcCCChHHH-HHHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999887665 222222 455544444443 3443334444455555554 6666665443
No 139
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=66.66 E-value=11 Score=42.71 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCcEEEec---CCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCC---cccCCCcceE
Q 044944 528 DDVCTLALDKRAAIIIVP---FHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIR---PTFDFQLSYH 601 (759)
Q Consensus 528 ~dI~~~A~~~~~~lIilp---~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~---~~~~~~~~~~ 601 (759)
++||.+|.++++|+|++| ||....... .-+..++.+=+.-+-+-||..=++-|.+.--+.. .+--.+...+
T Consensus 42 eEIl~iA~e~~VDmiLlGGDLFHeNkPSr~---~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlN 118 (646)
T KOG2310|consen 42 EEILEIAQENDVDMILLGGDLFHENKPSRK---TLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLN 118 (646)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCCccHH---HHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCcc
Confidence 689999999999999999 666532211 1123455566667778899999998885421111 1111122347
Q ss_pred EEEeecc--CcChH
Q 044944 602 IVMLFVG--GADDR 613 (759)
Q Consensus 602 i~~~f~G--G~ddr 613 (759)
|.+|.|+ |.+|.
T Consensus 119 IsIPVFsIHGNHDD 132 (646)
T KOG2310|consen 119 ISIPVFSIHGNHDD 132 (646)
T ss_pred eeeeeEEeecCCCC
Confidence 8888876 76654
No 140
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=64.96 E-value=19 Score=38.58 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=29.8
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeee
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVS 637 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~ 637 (759)
++++.|-||+|+--.|.+|.+.-......+.++++-.
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDT 65 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDT 65 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeC
Confidence 7899999999999999999887654456677787743
No 141
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=64.94 E-value=65 Score=35.98 Aligned_cols=105 Identities=10% Similarity=0.167 Sum_probs=62.2
Q ss_pred HHHhchhhhHHHHHHHhhcCCCCCch-hHH-HhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHH
Q 044944 262 GTCFGQGSFLGCFVFGLCLPDGPPLG-TQL-VNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKF 339 (759)
Q Consensus 262 ~~~~G~~~~lGafvaGl~i~~~~~~~-~~l-~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~ 339 (759)
+..+|.+..+=-...|++..... .+ -+. ...+..++..+.+.+-..-.|++++++.+....|....+..+...+.-.
T Consensus 26 ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~ 104 (574)
T COG3263 26 SSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSG 104 (574)
T ss_pred HHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444444444444455554422 11 000 1234445555666666666799999888766555544444444445555
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHhhhcc
Q 044944 340 TGVILSSSFFGISFIKASCLAFIMCCRG 367 (759)
Q Consensus 340 i~~~l~~~~~~~~~~~~~~lgl~m~~kG 367 (759)
+....+.+.++.+|-|++.+|-+....-
T Consensus 105 Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 105 LTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 6666778889999999999998765544
No 142
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=64.80 E-value=1.7e+02 Score=29.86 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcccC----CchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHh
Q 044944 26 FLSTRAIYFLLRPFH----QTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKH 101 (759)
Q Consensus 26 l~~~~l~~~l~~rl~----~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 101 (759)
++.-.+.-++.||.+ .|-+++.++...++- +..++..-+ .+..++++.+ +|-.-..|-+-+-=+++.+||
T Consensus 15 l~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~---~~~i~Y~~Y-~~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~ 88 (230)
T COG1346 15 LLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLL---LFGISYEDY-MKGGQWINFL--LGPATVALAVPLYKQRHLIKR 88 (230)
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH---HcCCCHHHH-hcccHHHHHH--HHHHHHHHhhHHHHHHHHHHH
Confidence 333334455666666 355555554444332 112221000 1123444444 333444555666677899999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHH-HHhhccHHHHHHHHHhccccC
Q 044944 102 IRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVA-ANSMTSLVVVTSVLKELNMLN 169 (759)
Q Consensus 102 ~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~-~ls~Ts~~vv~~iL~el~l~~ 169 (759)
+|+..+.-.+.+..+.+..+..++.+++.... +.... -=|+|. |+...+-++++-..
T Consensus 89 ~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----------~~~Sl~PkSvTT-piAm~vs~~iGGip 146 (230)
T COG1346 89 HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----------LILSLLPKSVTT-PIAMEVSESIGGIP 146 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----------HHHHhccccccc-HHHHHHHHhcCCch
Confidence 99999888888888888888888888865431 11111 224443 66666666666433
No 143
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=63.64 E-value=23 Score=37.03 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=60.7
Q ss_pred CcChHHHHHHHHHHhh-CCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEE---EEeCChhhH
Q 044944 609 GADDREALAYSRLMVE-HPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRV---EIVKDGIGT 684 (759)
Q Consensus 609 G~ddreAL~~a~rma~-~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e---~~v~~~~e~ 684 (759)
-|.|+-|++.|.|+.+ ..+.++|++.+=++. .+ +.+.+-... +-++..-.+ ..-.|...|
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~--------------a~-~~lr~aLAm-GaDraili~d~~~~~~d~~~t 99 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ--------------AE-EALREALAM-GADRAILITDRAFAGADPLAT 99 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecchh--------------hH-HHHHHHHhc-CCCeEEEEecccccCccHHHH
Confidence 6899999999999999 799999999995441 11 223321111 223333322 222344455
Q ss_pred HHHHHhhc--cCCcEEEEccCCCCCc--cccccCCcCCCCCccchhhhhh
Q 044944 685 TRVIQTLT--ENFDLFIVGKNHDPCS--KVTLGLSEWIEYPELGIIGDTL 730 (759)
Q Consensus 685 ~~~i~~~~--~~~DL~iVGr~~~~~~--~~~~gl~~w~e~~eLG~igd~l 730 (759)
..+|.+.. .++||++.|+.....+ .+=..+.+|-..|.++.+-++-
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 55555432 2689999999864322 2222234554455554444433
No 144
>COG4827 Predicted transporter [General function prediction only]
Probab=63.12 E-value=1.7e+02 Score=29.27 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhcChhHHHh--hhhhhHHHHHHHHHHHHHHHHHH
Q 044944 77 TFAEFGMILHIFVLGVQIDLGLIKH--IRRRAVAIGFFGCLIPLIFGMSS 124 (759)
Q Consensus 77 ~l~~lgl~~llF~~Gle~d~~~l~~--~~~~~~~ia~~~~~~p~~~~~~~ 124 (759)
..-..|..+.+|..|+++.+..=.. ..|++..|+....++...++...
T Consensus 9 l~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~gla 58 (239)
T COG4827 9 LTYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGGLA 58 (239)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888877653221 23456666665555544444433
No 145
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=62.71 E-value=2.2e+02 Score=30.40 Aligned_cols=83 Identities=10% Similarity=0.148 Sum_probs=56.5
Q ss_pred hhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhc
Q 044944 299 SGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWK 378 (759)
Q Consensus 299 ~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~ 378 (759)
..+++-.|++.++...|+..+...+.++ +..+...+......+..++.++.+..+-...++ -|..|-++.-....++
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~taP~~i--~~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~ 351 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTAPLII--LFGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAK 351 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhc
Confidence 4567778899999999998876543332 233333445667777888999988876554444 5777888877777777
Q ss_pred ccCcCc
Q 044944 379 DKKTIT 384 (759)
Q Consensus 379 ~~~~i~ 384 (759)
++....
T Consensus 352 nr~lv~ 357 (384)
T COG5505 352 NRELVA 357 (384)
T ss_pred Cchhcc
Confidence 654443
No 146
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=61.83 E-value=7.9 Score=40.22 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred hhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhh
Q 044944 298 TSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMW 377 (759)
Q Consensus 298 ~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~ 377 (759)
.++++=++-|.-+|..+|++-+..... .+++-..+-++ +..+++.+...|+..+|+..+|.+=..-|-.++.+.+..
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPk--tllLGaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~L 158 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPK--TLLLGAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKL 158 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcH--HHHhhhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecccc
Confidence 467888889999999999987765522 11222222222 334556677789999999999987677776665554321
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 044944 378 KDKKTITSQIFALLIANMVIVTSIASAVVGYLYDPSR 414 (759)
Q Consensus 378 ~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~~~~~ 414 (759)
.-.++..-..++--.|+++ -.+-+|+.+.+..+++
T Consensus 159 -AP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~E 193 (375)
T COG1883 159 -APELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEE 193 (375)
T ss_pred -CHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHH
Confidence 1112222222222334454 6668888888775543
No 147
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=61.28 E-value=9.3 Score=32.16 Aligned_cols=48 Identities=17% Similarity=-0.011 Sum_probs=36.5
Q ss_pred ChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhH-HHHHhhhhcCCcce
Q 044944 525 SMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIR-ALNGNILDKAPCSV 578 (759)
Q Consensus 525 ~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~-~~n~~vl~~ApCsV 578 (759)
.+++.+.+.|++.++|.|+.|.|.....+.. ..+ +...++.+.++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~------~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRR------LGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhc------cCchhhhhhcccccCCce
Confidence 8899999999999999999998876432221 122 44568889999986
No 148
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=60.13 E-value=52 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=31.5
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeee
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVS 637 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~ 637 (759)
+|++.+-||.|+--++.++.+...+.+.+++++++-.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5789999999999999999998876667788888853
No 149
>COG3329 Predicted permease [General function prediction only]
Probab=58.66 E-value=2.1e+02 Score=30.40 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHhc--hhhhHHHHHHHhhcCCCC---CchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHH
Q 044944 260 FVGTCFG--QGSFLGCFVFGLCLPDGP---PLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMS 334 (759)
Q Consensus 260 ~~~~~~G--~~~~lGafvaGl~i~~~~---~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~ 334 (759)
++.+..| ++|.+.-|+.|++++-.. .+.+.+.+-+.. .++---=..-|+.+.-+.+... ...+..-+.+.
T Consensus 7 fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lsl----yLL~aIG~kGGveir~snl~a~-v~~~~~~~aL~ 81 (372)
T COG3329 7 FLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALSL----YLLLAIGFKGGVEIRNSNLTAM-VLPVALGVALG 81 (372)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHHH----HHHHHHhcccceeeecCCcchh-HHHHHHHHHHH
Confidence 4444444 478888888888877531 112222222211 1111111122333333333322 22344555566
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHH
Q 044944 335 YIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFAL 390 (759)
Q Consensus 335 ~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~ 390 (759)
++.-++..++..++.|++..|+...+-....-..+..+.+...++..-+.-+-|..
T Consensus 82 ~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 82 FLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 67778888888888899999999998877777777777766666655555554443
No 150
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=58.19 E-value=1.1e+02 Score=34.06 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=58.6
Q ss_pred HhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCC-hHHHHH-HHHHh--hhcchh
Q 044944 294 LDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGIS-FIKASC-LAFIM--CCRGIP 369 (759)
Q Consensus 294 l~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~-~~~~~~-lgl~m--~~kG~v 369 (759)
+.+.++..++|+-....=++.|++.+...+.. .+...+++.++-.+++.++.+.++.. -.|... .|.+. -.-|.+
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~-~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRLGGR-LLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchh
Confidence 44555677778777777788999988766443 45555566777777887777766644 234333 23322 233666
Q ss_pred hHHHHhhhcccCcCchhHHHHHHHHH
Q 044944 370 EIAMYCMWKDKKTITSQIFALLIANM 395 (759)
Q Consensus 370 ~l~~~~~~~~~~~i~~~~~~~~v~~~ 395 (759)
..+....+++ .+++.+...+.+=
T Consensus 131 N~~Av~~al~---~~~~~~~a~~aaD 153 (378)
T PF05684_consen 131 NFVAVAEALG---VSDSLFAAALAAD 153 (378)
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHH
Confidence 6665555543 2456666554443
No 151
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=58.07 E-value=31 Score=35.05 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=50.4
Q ss_pred EEEEEEEEccCC-ChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEe
Q 044944 513 VVQHFTTIAPYA-SMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLV 582 (759)
Q Consensus 513 ~v~~~t~vs~~~-~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlv 582 (759)
...++|-++|.+ ...++|.+.+.+-++|.|++| |+...+.+..+.+.+++-++..-||-++.
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--------GS~gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--------GSDGVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEEC--------CcccccHHHHHHHHHHHHhhcCCCEEEec
Confidence 357899999999 999999999999999999999 22223334678888898889988886654
No 152
>COG0679 Predicted permeases [General function prediction only]
Probab=57.54 E-value=1.7e+02 Score=31.51 Aligned_cols=105 Identities=12% Similarity=0.063 Sum_probs=65.4
Q ss_pred hhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 044944 269 SFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSF 348 (759)
Q Consensus 269 ~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~ 348 (759)
+++.-...|..+.+.....++-.+-+..++..+.+|..+...=.+.+.+.. ..+.......+..++.=+...++..+.
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL--ADLGLIVASLVATLLAFFLLALIGRFL 88 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666566677777899999999999998877777776654 223334444444455555566666667
Q ss_pred hCCChHHH--HHHHHHhhhcchhhHHHHh
Q 044944 349 FGISFIKA--SCLAFIMCCRGIPEIAMYC 375 (759)
Q Consensus 349 ~~~~~~~~--~~lgl~m~~kG~v~l~~~~ 375 (759)
.+.+.+++ ..++...+.-|-+.+-++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~N~g~lg~pi~~ 117 (311)
T COG0679 89 FKLDKRETVIFALASAFPNIGFLGLPVAL 117 (311)
T ss_pred hccchhhHHHHHHHHHhcccchhhHHHHH
Confidence 77777665 3344445555655544433
No 153
>COG2035 Predicted membrane protein [Function unknown]
Probab=57.37 E-value=2.5e+02 Score=29.45 Aligned_cols=47 Identities=28% Similarity=0.451 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcC--cccccCcC
Q 044944 15 TPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIG--PSILGDDT 63 (759)
Q Consensus 15 l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilG--P~~lg~~~ 63 (759)
.|+..-.+.-++.+++++.++++. .|.++-...+|+++| |+.++.++
T Consensus 59 i~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i~ 107 (276)
T COG2035 59 IPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEIN 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555677788888888877 566666678899988 55566554
No 154
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=56.19 E-value=2.3e+02 Score=28.71 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHH
Q 044944 324 TRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIAS 403 (759)
Q Consensus 324 ~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~ 403 (759)
|..++.-++.+.+.-++.+++.++++|.+.. ... .+.+|....-+...+..+.|-...-.-..++++-++ ..+.+
T Consensus 77 ~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~--Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~-Ga~~g 151 (215)
T PF04172_consen 77 WIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IIL--SLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGIL-GAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhH-HHHhH
Confidence 5555566666777778888888999998753 333 367999887777777666665443333333333333 33344
Q ss_pred H-HHHH
Q 044944 404 A-VVGY 408 (759)
Q Consensus 404 p-lv~~ 408 (759)
| +.++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 4 4444
No 155
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=55.81 E-value=87 Score=30.28 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=31.1
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCC--CeEEEEEEeeeC
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHP--NISLTVVWFVSS 638 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~--~v~ltv~r~~~~ 638 (759)
||++.+-||+|.--++.++.+..++- +.+++.+++-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58899999999999999998887654 778888887543
No 156
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=53.63 E-value=73 Score=38.40 Aligned_cols=122 Identities=14% Similarity=0.281 Sum_probs=73.7
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcc-hhhHHHHHHHhhhhcCCCCeEEEEEEe
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDD-RDLDNHAFDEFKDSVVTKKITLRVEIV 678 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~v~~~e~~v 678 (759)
.||++...|++...--.+.|.|+|+.-+...|++++..++. ....+.+ +.++ +.+ ++.++. +..+ +++
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~----~~~~~~~~~~l~-~~~-~Lae~l-Gae~----~~l 317 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPEL----HRLSEKEARRLH-ENL-RLAEEL-GAEI----VTL 317 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccc----ccccHHHHHHHH-HHH-HHHHHh-CCeE----EEE
Confidence 49999999999999999999999999999999999986631 1111122 2222 222 122222 2211 222
Q ss_pred CChhhHHHHHHhhcc--CCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 679 KDGIGTTRVIQTLTE--NFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 679 ~~~~e~~~~i~~~~~--~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
.+.++.++|-+.++ +.--+|+||+++. -|-+.-. |-+.|-|+..--...|-+|-
T Consensus 318 -~~~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~~~~idv~ii~ 373 (890)
T COG2205 318 -YGGDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLAREAPGIDVHIVA 373 (890)
T ss_pred -eCCcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhcCCCceEEEee
Confidence 23344455444433 5778999999864 3544322 77888887643222555553
No 157
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=53.38 E-value=36 Score=36.25 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=28.8
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeee
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVS 637 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~ 637 (759)
+.++.|-||+|+--.|.+|.+.-..-+..+.++++-.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDT 57 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDT 57 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEec
Confidence 4567899999999999999988654356678888843
No 158
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=53.01 E-value=67 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=25.7
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEee
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFV 636 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~ 636 (759)
+|++.|-||+|+--.|.++.+...+. -.+.++++-
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 47899999999999998888765532 345566653
No 159
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=50.90 E-value=47 Score=31.78 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=56.1
Q ss_pred hhHHHHHHHhhcCCCC---CchhHHHhHHhhhhhhhhHHHHHHHhcccccccc---cccch-hhHHHHHHHHHHHHHHHH
Q 044944 269 SFLGCFVFGLCLPDGP---PLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYL---LKESS-TRKMELIMVMSYIGKFTG 341 (759)
Q Consensus 269 ~~lGafvaGl~i~~~~---~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~---l~~~~-~~~~~~i~~~~~~~K~i~ 341 (759)
..-|+++.|+++.+.. |..-.+......+..++-+-+|...+|++.-.+. +.... +.......++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3457778888777643 3333444556666688899999999999886543 33333 222333334444445666
Q ss_pred HHHHHHhhCCChHHHHHHHH
Q 044944 342 VILSSSFFGISFIKASCLAF 361 (759)
Q Consensus 342 ~~l~~~~~~~~~~~~~~lgl 361 (759)
.++..+++|+++. ...|.
T Consensus 103 ~~~~~~~~~~~~~--~~~G~ 120 (154)
T TIGR01625 103 AVALIKLLRINYA--LTAGM 120 (154)
T ss_pred HHHHHHHhCCCHH--HHHHH
Confidence 7777788899874 44444
No 160
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=50.63 E-value=1.7e+02 Score=31.50 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=50.2
Q ss_pred hHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 044944 270 FLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES--STRKMELIMVMSYIGKFTGVILSSS 347 (759)
Q Consensus 270 ~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~--~~~~~~~i~~~~~~~K~i~~~l~~~ 347 (759)
++.+.++|...|.-...+..+. .|.. ..+.+.+.|...|++++.+++... .|..........++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888887433222221 1222 233466677778999999888765 5655444444445555555555555
Q ss_pred hhCCChHHHHHHHHH
Q 044944 348 FFGISFIKASCLAFI 362 (759)
Q Consensus 348 ~~~~~~~~~~~lgl~ 362 (759)
..+-...+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 443222244666653
No 161
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=50.26 E-value=47 Score=31.03 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=46.9
Q ss_pred CChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcC-CcceEEEeeCCCC
Q 044944 524 ASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKA-PCSVGVLVQRGKI 587 (759)
Q Consensus 524 ~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~A-pCsVgIlvdrg~~ 587 (759)
....+.+.+++++++++.||+|...+. ||.........+.+.+++-++- +++| .++|-.+.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCChh
Confidence 688899999999999999999987654 5554334446788888888886 9998 66776543
No 162
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=50.16 E-value=49 Score=35.94 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=58.9
Q ss_pred cHHHHHHH-HHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCccc--ccCcCCCcCCCCchHHHHHHHHHHHHHHHHHH
Q 044944 14 TTPVLLLQ-MVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSI--LGDDTSTLFPMRNRHILRTFAEFGMILHIFVL 90 (759)
Q Consensus 14 ~l~~~ll~-l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~--lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~ 90 (759)
+++....+ +.+...++.+.+.+.|++|+|.. ++++.++++-.+ .+.++ .+.=..+..++..++--.+
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v~~~~~~~--------~~lP~wl~~va~~~iG~~I 250 (352)
T COG3180 181 WLPPVDWLILLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIVHFGGGIT--------IQLPAWLLAVAQALIGALI 250 (352)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhhccccee--------eeCCHHHHHHHHHHHHHHH
Confidence 34444444 66677778888899999998863 333444433211 11111 1111234466777888899
Q ss_pred hhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 91 GVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQ 130 (759)
Q Consensus 91 Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~ 130 (759)
|.++|-..++...|....+ +.+.+.=+..+...++++..
T Consensus 251 G~~f~~~~l~~~~r~~~~~-~v~ii~l~~~~~~~a~ll~~ 289 (352)
T COG3180 251 GSRFDRSILREAKRLLPAI-LVSIIALMAIAAGMAGLLSW 289 (352)
T ss_pred cccccHHHHHHhHhhcchH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999887665554433 33333333334444444443
No 163
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=50.13 E-value=3.8e+02 Score=29.40 Aligned_cols=249 Identities=13% Similarity=0.126 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcccccCc----------CC-CcCCCC-----chHHHHHHHHHH
Q 044944 19 LLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDD----------TS-TLFPMR-----NRHILRTFAEFG 82 (759)
Q Consensus 19 ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~----------~~-~~fp~~-----~~~~l~~l~~lg 82 (759)
.-++..+++...+++.-.+|---|.+.--|=.|+++...-+... ++ ...|.. ....++.+-+.|
T Consensus 22 ~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~g 101 (399)
T TIGR03136 22 ITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFT 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHH
Confidence 44666666666667777777778888888888888875432100 10 000000 012333333333
Q ss_pred H------HHHHHHHhhhcChhHHHhhhhhhHHHH-H--HHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhc
Q 044944 83 M------ILHIFVLGVQIDLGLIKHIRRRAVAIG-F--FGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMT 153 (759)
Q Consensus 83 l------~~llF~~Gle~d~~~l~~~~~~~~~ia-~--~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~T 153 (759)
+ .++.+-+|--+|+.-+..+.|..+..| . .+..+++.. +..++... .++..+|++-..-
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~~----A~~lGF~~--------~eAAsIgIIGgAD 169 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLVI----GYYCGLTP--------GEAAAVGTIGGAD 169 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHHH----HHHcCCCH--------HHhhHHhhcccCC
Confidence 2 234445788899999988888877633 2 333333332 33344322 3555566555443
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044944 154 SLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWI 233 (759)
Q Consensus 154 s~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l 233 (759)
.+..+.- ..|+...-+|-+++++ -.+......+-+|+++++
T Consensus 170 GPTaIf~---s~kLAp~Llg~IaVAA------------------------------------YsYMaLVPiiqPpimklL 210 (399)
T TIGR03136 170 GPMVLFA---SLILAKDLFVPISIIA------------------------------------YLYLSLTYAGYPYLIKLL 210 (399)
T ss_pred ccHHHHH---HHhhhhHhHHHHHHHH------------------------------------HHHHHHHhcccchHHHhh
Confidence 3221111 1122222222211110 012333344556677666
Q ss_pred Hhhc------c-cCCCCcch-HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHH
Q 044944 234 VSKT------A-EGESMKQS-HFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPV 305 (759)
Q Consensus 234 ~~~~------~-~~~~~~e~-~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~Pl 305 (759)
..+. . +.+++++. -+.+-+....+++.+. =.-.+.+|.+.+|-.+.+.. . +++.+-.+.-......-+
T Consensus 211 ttkkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTif 286 (399)
T TIGR03136 211 VPKKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLF 286 (399)
T ss_pred cCHHHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHH
Confidence 4331 1 11223222 2444444444444442 23468899999999999864 3 566555554444444455
Q ss_pred HHHHhcccccccccccc
Q 044944 306 FCAMSGIRWEMYLLKES 322 (759)
Q Consensus 306 FF~~~G~~~dl~~l~~~ 322 (759)
.=..+|...+-+.+.+.
T Consensus 287 LGl~vG~t~~A~~FL~~ 303 (399)
T TIGR03136 287 LGLVLGVLCEASTLLDP 303 (399)
T ss_pred HHHHhhhhccHHhhCCh
Confidence 55778888876655433
No 164
>COG3748 Predicted membrane protein [Function unknown]
Probab=49.87 E-value=1.4e+02 Score=31.82 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHH
Q 044944 299 SGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKF 339 (759)
Q Consensus 299 ~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~ 339 (759)
+-+-+|+.|+++.-+..+..-...+|.+..++.+.+...|-
T Consensus 226 nylTLPVlF~MlSNHyp~~~gt~fnWii~alv~l~gV~IRh 266 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFGTQFNWIIAALVFLMGVLIRH 266 (407)
T ss_pred ceehHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence 55788999998887776654444478766666665555443
No 165
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=49.82 E-value=2.3e+02 Score=26.72 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCch---hHHHHHHHHhcCcccccCcCCCcCCCCchHHHH-----HHHHHHHHHHHH
Q 044944 17 VLLLQMVVIFLSTRAIYFLLRPFHQTT---VMAQILGGAIIGPSILGDDTSTLFPMRNRHILR-----TFAEFGMILHIF 88 (759)
Q Consensus 17 ~~ll~l~lil~~~~l~~~l~~rl~~P~---iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~-----~l~~lgl~~llF 88 (759)
.++.|+++++.+..+...+.+-+++|- ++|+++-=+.+ .++... .+.++ .+.++++.|+==
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L---~~~~vk--------~~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLL---CTKVVK--------LEQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcC--------HHHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888877777777777653 33333221111 122322 12222 333444444444
Q ss_pred HHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 044944 89 VLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFR 126 (759)
Q Consensus 89 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~ 126 (759)
-+|+=...+.++.++.+.+..-+.+.++.++.+..+..
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~ 114 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQ 114 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777766665555555555555444433
No 166
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=49.04 E-value=1.3e+02 Score=32.46 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhh--cChhHHHhhhhhhHHHHHHHHHHHHHHH
Q 044944 44 VMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQ--IDLGLIKHIRRRAVAIGFFGCLIPLIFG 121 (759)
Q Consensus 44 iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle--~d~~~l~~~~~~~~~ia~~~~~~p~~~~ 121 (759)
.+|-++.|.+-||.....+++ .+..+=.=-+.+|+...|++ =.++++|+.++.....++..=++--.+|
T Consensus 183 LlGgliIG~~~g~~g~~~i~p---------f~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ig 253 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKP---------FFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALIG 253 (327)
T ss_pred HHHHHHHhheeCccchhhccc---------hhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHH
Q 044944 122 MSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSV 161 (759)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~i 161 (759)
..++++++.... .......+++.-|-.+.|...|.
T Consensus 254 ~~lg~~~gls~G-----g~~llavLaASASYIAvPAAmR~ 288 (327)
T PF05982_consen 254 IGLGWLLGLSPG-----GAVLLAVLAASASYIAVPAAMRA 288 (327)
T ss_pred HHHHHHhCCCCc-----cHHHHHHHHhhHhhhhhhHHHHh
No 167
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=48.61 E-value=77 Score=37.14 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh---------hCCChHHHHHHHHHhhhcchh
Q 044944 299 SGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSF---------FGISFIKASCLAFIMCCRGIP 369 (759)
Q Consensus 299 ~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~---------~~~~~~~~~~lgl~m~~kG~v 369 (759)
..+++|....-.|..+|...+... +..++.+.+.+++.-.+.+....++ .++|+.+++.+|.++++-.-+
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n-~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFEN-LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 456788888888999999887765 3333333333333332222222221 256999999999999998876
Q ss_pred hHH
Q 044944 370 EIA 372 (759)
Q Consensus 370 ~l~ 372 (759)
...
T Consensus 148 AVl 150 (559)
T TIGR00840 148 AVL 150 (559)
T ss_pred HHH
Confidence 654
No 168
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=48.21 E-value=20 Score=30.11 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=27.1
Q ss_pred EEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEe
Q 044944 602 IVMLFVGGADDREALAYSRLMVEHPNISLTVVWF 635 (759)
Q Consensus 602 i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 635 (759)
|++++-||+|+..++.+|.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 4688899999999999999987 44667777776
No 169
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=47.88 E-value=3.6e+02 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.0
Q ss_pred ChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 95 DLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQ 130 (759)
Q Consensus 95 d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~ 130 (759)
|.+.+.|.+.+.+..-+....+..++|..++..+..
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~p 101 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQP 101 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667777777777666666666666677666665543
No 170
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=46.44 E-value=1.2e+02 Score=34.33 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=42.9
Q ss_pred eEEEEeeccCcChHHHHHHHHHHh-hCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc
Q 044944 600 YHIVMLFVGGADDREALAYSRLMV-EHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV 666 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma-~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 666 (759)
.+|++.+-||+|+=-.|.+..+.. ..++.+++++|+-..- ..+.+.+.++.+++..++
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhgl---------r~~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGL---------SPNADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCC---------CcchHHHHHHHHHHHHHc
Confidence 489999999999998888888776 4568899999995331 012234557788887776
No 171
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.10 E-value=36 Score=36.70 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHHHhhhhcCCCCeEEEEEEe---CChhhHHHHHHhhcc-----CCcEEEEccCCCCC
Q 044944 657 HAFDEFKDSVVTKKITLRVEIV---KDGIGTTRVIQTLTE-----NFDLFIVGKNHDPC 707 (759)
Q Consensus 657 ~~~~~~~~~~~~~~v~~~e~~v---~~~~e~~~~i~~~~~-----~~DL~iVGr~~~~~ 707 (759)
++++.++.++..-++.+-...| +...+++++|+.... +||++|++|++|..
T Consensus 30 D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 30 DFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred HHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 4666666655323455555555 567788888888753 49999999999863
No 172
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=45.30 E-value=78 Score=33.80 Aligned_cols=73 Identities=23% Similarity=0.212 Sum_probs=50.5
Q ss_pred HHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 044944 46 AQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSF 125 (759)
Q Consensus 46 ~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~ 125 (759)
-.++.|+++|. +++ +-.+.+..-..+-.-|+-|..|-.+|+..+.+.+-.-..+++..+++.....+...
T Consensus 176 lP~iiG~iLGN-----LD~-----~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~d 245 (314)
T PF03812_consen 176 LPIIIGMILGN-----LDP-----DFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLAD 245 (314)
T ss_pred HHHHHHHHHhc-----CCH-----HHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHH
Confidence 34567888884 221 12333333344456678899999999999999998888888887777766666655
Q ss_pred HHH
Q 044944 126 RLI 128 (759)
Q Consensus 126 ~~l 128 (759)
.++
T Consensus 246 r~i 248 (314)
T PF03812_consen 246 RLI 248 (314)
T ss_pred HHH
Confidence 554
No 173
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.97 E-value=4e+02 Score=28.19 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHH
Q 044944 299 SGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKF 339 (759)
Q Consensus 299 ~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~ 339 (759)
+-+-+|+.|.++.-+-.+..-...+|.++.++.+.+...|-
T Consensus 229 ~ylTlPvLf~MiSnHyp~~y~~~~nWlil~li~~~g~~IRh 269 (300)
T PF06181_consen 229 NYLTLPVLFLMISNHYPMTYGHPYNWLILALIMLAGALIRH 269 (300)
T ss_pred ceeHHHHHHHHHhccCccccccchhHHHHHHHHHHHHHHHH
Confidence 44678999998766555443334467655555555544443
No 174
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=44.94 E-value=3.9e+02 Score=27.96 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcC
Q 044944 15 TPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIG 55 (759)
Q Consensus 15 l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilG 55 (759)
+|+.+-...-++..++++.++++. .|..+-....|+++|
T Consensus 58 ~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlg 96 (257)
T PF04018_consen 58 LPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILG 96 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 333344444455566666666554 345555556666665
No 175
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=43.89 E-value=54 Score=35.28 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=41.0
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCe-EEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNI-SLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV 666 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v-~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 666 (759)
.+|||-|-||+|+-..|.++.+.++..+- ++.|+++--+ -+...--+.++|.+..+
T Consensus 28 ~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E-----------~QYs~TidyV~em~~~~ 84 (407)
T COG3969 28 PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWE-----------AQYSCTIDYVQEMRESY 84 (407)
T ss_pred CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcch-----------hhhhhHHHHHHHHHhcc
Confidence 39999999999999999999999977655 7888877322 22233345666666654
No 176
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=41.50 E-value=1.5e+02 Score=31.62 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=50.7
Q ss_pred HHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 044944 46 AQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSF 125 (759)
Q Consensus 46 ~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~ 125 (759)
-.++.|+++|. +++ +-.+.+..-..+-..|+-|..|-.+|++.+.+.+-.-..+++...+++....+...
T Consensus 176 lPlliG~ilGN-----LD~-----~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~d 245 (314)
T TIGR00793 176 LPFLVGFALGN-----LDP-----ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILAD 245 (314)
T ss_pred HHHHHHHHHhc-----CCH-----HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHH
Confidence 34567888884 221 11223333333446678899999999999999988888888887777777776666
Q ss_pred HHHh
Q 044944 126 RLIQ 129 (759)
Q Consensus 126 ~~l~ 129 (759)
.++.
T Consensus 246 r~~~ 249 (314)
T TIGR00793 246 KFIG 249 (314)
T ss_pred HHhc
Confidence 6553
No 177
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=40.81 E-value=3.5e+02 Score=33.18 Aligned_cols=66 Identities=11% Similarity=0.000 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhcc
Q 044944 80 EFGMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTS 154 (759)
Q Consensus 80 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts 154 (759)
++-+-++....|++.|+..+.+ +.............-++.+.+.+.+...++ ..++.+|.+++.=.
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~--------~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPL--------RDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCch--------hHHHHHHHHHHhhh
Confidence 4455666777899999999988 333333333334444445555555443333 46777777776533
No 178
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.09 E-value=1.1e+02 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHH
Q 044944 209 LYMFPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFIS 250 (759)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~ 250 (759)
++.++++++.++.++|+.|..+..-.+.+| |..|-.+..
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NP---pine~~iR~ 46 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNP---PINEEMIRM 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHHHHH
Confidence 344555556666778888888887777776 355555443
No 179
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=39.24 E-value=5.8e+02 Score=28.37 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=19.0
Q ss_pred HHHHHHcccCCchhHHHHHHHHhcCcccccCcC
Q 044944 31 AIYFLLRPFHQTTVMAQILGGAIIGPSILGDDT 63 (759)
Q Consensus 31 l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~ 63 (759)
+..++.++.++|.-+.-+++.+++- .+|..+
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll~--~~gv~~ 40 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIAL--ILGLVS 40 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHHH--HHCCCC
Confidence 4446667777887777777665552 345544
No 180
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=39.01 E-value=57 Score=35.07 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.8
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEee
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFV 636 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~ 636 (759)
++++.|-||+|+--.|.+|.+........+.++++-
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VD 74 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVD 74 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeC
Confidence 577899999999999999998875445567788763
No 181
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=38.18 E-value=5.5e+02 Score=27.82 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=34.7
Q ss_pred HHHcccCCchhHHHHHHHHhcCccc--ccCcCCCcCCCCchHHHHHHHHHHHHHHHHH
Q 044944 34 FLLRPFHQTTVMAQILGGAIIGPSI--LGDDTSTLFPMRNRHILRTFAEFGMILHIFV 89 (759)
Q Consensus 34 ~l~~rl~~P~iv~~IlaGiilGP~~--lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~ 89 (759)
.+...+|+|+++.-+++|..+|-++ +..+.+.-..+.+.--++.-+.+|.++.+|.
T Consensus 47 ~ii~~~RlPRil~a~lvG~~La~sG~i~Q~l~rNpLa~P~iLGissGA~l~~~l~~~~ 104 (325)
T TIGR03869 47 AIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVL 104 (325)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999998554 2111110111223344555667777777765
No 182
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=37.28 E-value=2.2e+02 Score=30.06 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=42.6
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV 666 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 666 (759)
.+|++.+-||+|+=-+|.+..++.++ +.++++|+-..-. .+.+.+.+..+++..+.
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~---------~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLR---------GYSDQEAELVEKLCEKL 77 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCC---------CccchHHHHHHHHHHHh
Confidence 49999999999999999999999988 9999999964421 12234455666666654
No 183
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=37.19 E-value=2.4e+02 Score=31.08 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=71.3
Q ss_pred cccccccCchhhHHHHHhhhhcCCcc--eEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeE
Q 044944 552 VNCLVESSELPIRALNGNILDKAPCS--VGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNIS 629 (759)
Q Consensus 552 ~~g~~~~~~~~~~~~n~~vl~~ApCs--VgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ 629 (759)
+.|.+|..-....++.+.|-+.-+.+ ||+ |=... . ...-+|.|-.|++++|+.+.+...
T Consensus 191 YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~---Rls~~------------d--~~~~~g~~~~e~~~la~~L~~~G~-- 251 (363)
T COG1902 191 YGGSLENRARFLLEVVDAVREAVGADFPVGV---RLSPD------------D--FFDGGGLTIEEAVELAKALEEAGL-- 251 (363)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhCCCceEEE---EECcc------------c--cCCCCCCCHHHHHHHHHHHHhcCC--
Confidence 44667766678889999998888775 655 31100 0 011138999999999999998765
Q ss_pred EEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEE-eCChhhHHHHHHhhccCCcEEEEccCCCCCc
Q 044944 630 LTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEI-VKDGIGTTRVIQTLTENFDLFIVGKNHDPCS 708 (759)
Q Consensus 630 ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~-v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~ 708 (759)
+-.+|+........... ......--..+.+.++.+. ++...-.- ..+.+...+++++ +..|||-+||-.-.++
T Consensus 252 ~d~i~vs~~~~~~~~~~-~~~~~~~~~~~a~~i~~~~---~~pvi~~G~i~~~~~Ae~~l~~--g~aDlVa~gR~~ladP 325 (363)
T COG1902 252 VDYIHVSEGGYERGGTI-TVSGPGYQVEFAARIKKAV---RIPVIAVGGINDPEQAEEILAS--GRADLVAMGRPFLADP 325 (363)
T ss_pred ccEEEeecccccCCCCc-cccccchhHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHc--CCCCEEEechhhhcCc
Confidence 45566654421100000 0000000012222333322 23321111 2344444444444 3699999999876655
Q ss_pred c
Q 044944 709 K 709 (759)
Q Consensus 709 ~ 709 (759)
.
T Consensus 326 ~ 326 (363)
T COG1902 326 D 326 (363)
T ss_pred c
Confidence 3
No 184
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=37.00 E-value=1.4e+02 Score=32.35 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=55.8
Q ss_pred HHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeE-EEEEEe-CChhhHHHHHHhhc
Q 044944 615 ALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKIT-LRVEIV-KDGIGTTRVIQTLT 692 (759)
Q Consensus 615 AL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~-~~e~~v-~~~~e~~~~i~~~~ 692 (759)
|....+|.-+.-+ .--..+|+.+.. ...+...+.+..++ ++. |.|..- +...||..++|+|.
T Consensus 34 a~~~v~rfL~~l~-~~~~~~flt~p~------------~mG~~~~~~~~~~~---~v~~~~~~~~~tTa~DT~~~~r~~~ 97 (355)
T COG3199 34 AIVRVKRFLKKLD-ANGDVEFLTPPG------------PMGESLAEASGFKY---RVIRFQESTPRTTAEDTINAVRRMV 97 (355)
T ss_pred HHHHHHHHHHhcc-ccCceEEEeCCc------------ccchhHHHhhcCcc---eEEeecccCCCccHHHHHHHHHHHH
Confidence 3555677766666 222466664421 23334444444443 333 777776 67889999999997
Q ss_pred c-CCcEEEEccCCCCCccccccCCcCCCCCccc
Q 044944 693 E-NFDLFIVGKNHDPCSKVTLGLSEWIEYPELG 724 (759)
Q Consensus 693 ~-~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG 724 (759)
+ +-||+++--+.+......++. =.+-|-||
T Consensus 98 ~~gVdlIvfaGGDGTarDVa~av--~~~vPvLG 128 (355)
T COG3199 98 ERGVDLIVFAGGDGTARDVAEAV--GADVPVLG 128 (355)
T ss_pred hcCceEEEEeCCCccHHHHHhhc--cCCCceEe
Confidence 7 799999877766544444444 22445555
No 185
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=36.81 E-value=5.3e+02 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcccCCc-------hhHHHHHHHHhc
Q 044944 13 STTPVLLLQMVVIFLSTRAIYFLLRPFHQT-------TVMAQILGGAII 54 (759)
Q Consensus 13 ~~l~~~ll~l~lil~~~~l~~~l~~rl~~P-------~iv~~IlaGiil 54 (759)
|+.-.-+....++.+......+++||++++ ..+-+++.|-.+
T Consensus 20 Yn~Vnt~~YaiiL~~~v~~v~~ll~~l~i~id~~f~~al~P~m~~G~~l 68 (273)
T PF01889_consen 20 YNPVNTLTYAIILGVAVIGVYKLLKRLRIKIDERFVLALIPFMLFGGAL 68 (273)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhhhHHHHHHHH
Confidence 345555566666666677788899999876 345555555444
No 186
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=36.50 E-value=5.6e+02 Score=27.40 Aligned_cols=136 Identities=11% Similarity=0.082 Sum_probs=77.3
Q ss_pred hhhHHHHHHHhhcCCC-CCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 044944 268 GSFLGCFVFGLCLPDG-PPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSS 346 (759)
Q Consensus 268 ~~~lGafvaGl~i~~~-~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~ 346 (759)
+|.+=|.++|+++.-. -+....+.+-++.+ .....|+-...+|+.++...+... +.......++..+.-.+.++...
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~~-~~~~~~~~~~klil~P~i~~~~~ 259 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKLG-VRDAILALIVRFLVQPAVMAGIS 259 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhccC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666542 12345556666666 788999999999999987665433 34444555556666666667777
Q ss_pred HhhCCChHHHHHHHH-HhhhcchhhHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 044944 347 SFFGISFIKASCLAF-IMCCRGIPEIAMYCMWKDKKTITSQIFALLIANMVIVTSIASAVVGYL 409 (759)
Q Consensus 347 ~~~~~~~~~~~~lgl-~m~~kG~v~l~~~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l 409 (759)
...+.+.......=+ .-.|-+....+++ .+.+. +++..+..+....+.+.++-|+.-++
T Consensus 260 ~~~~l~~~~~~~~vl~aa~P~a~~~~i~A---~~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 260 KLIGLRGLELSVAILQAALPGGAVAAVLA---TEYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHhCCChHHHHHHHHHHcCChhhHHHHHH---HHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776544322111 1234444433333 33343 44444444444444477777776553
No 187
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=36.24 E-value=4.2e+02 Score=27.58 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhcc
Q 044944 140 ATGIAASVAANSMTSLVVVTSVLKELN 166 (759)
Q Consensus 140 ~~~~l~ig~~ls~Ts~~vv~~iL~el~ 166 (759)
+...+.+|-+++.++.+ .-+..+|++
T Consensus 128 Pi~GMiiGNsm~a~sla-l~r~~~~l~ 153 (250)
T PF03649_consen 128 PIAGMIIGNSMNAVSLA-LERFYSELR 153 (250)
T ss_pred HHHHHHHhhHHHHHHHH-HHHHHHHHH
Confidence 35566777777666533 445555554
No 188
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=35.72 E-value=5.1e+02 Score=26.65 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044944 82 GMILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQ 131 (759)
Q Consensus 82 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~ 131 (759)
|-.-..|-.-+--+.+.+||+++..+.--+.+.++.++.+..++.+++.+
T Consensus 72 gPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~ 121 (232)
T PRK04288 72 EPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLD 121 (232)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 33334444555567889999999988877788888888888888887654
No 189
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=35.16 E-value=5e+02 Score=26.38 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHH-HhhccHHHHHHHHHhcc
Q 044944 88 FVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAA-NSMTSLVVVTSVLKELN 166 (759)
Q Consensus 88 F~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~-ls~Ts~~vv~~iL~el~ 166 (759)
+-.-+-=+.+.+||++++.+.--..+.++.++.+..++++++.+. .+..+.+ =|+| .|+...+-++++
T Consensus 62 LAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~----------~~~~Sl~pkSVT-tpiAi~is~~iG 130 (215)
T PF04172_consen 62 LAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSP----------EIILSLAPKSVT-TPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH----------HHHHHHHHHHhh-HHHHHHHHHHhC
Confidence 333444467889999998888777888888888888887776532 2222322 2444 477777766665
Q ss_pred ccCChhHHHHHHHHHHHHHHHHH
Q 044944 167 MLNSELGRLASSAAMVSDILSWI 189 (759)
Q Consensus 167 l~~s~~g~l~ls~a~i~D~~~~~ 189 (759)
-. ..++....+++-+++-.
T Consensus 131 G~----~sLta~~VvitGi~Ga~ 149 (215)
T PF04172_consen 131 GI----PSLTAVFVVITGILGAV 149 (215)
T ss_pred Ch----HHHHHHHHHHHhhHHHH
Confidence 22 23444444445444433
No 190
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=35.00 E-value=68 Score=29.54 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=28.5
Q ss_pred EEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCC
Q 044944 514 VQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQW 550 (759)
Q Consensus 514 v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~ 550 (759)
..-..++=|...||..|.++|++-++|++|-|+....
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 3567888899999999999999999999999987654
No 191
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=34.59 E-value=2e+02 Score=31.43 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=66.4
Q ss_pred cccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEE
Q 044944 554 CLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVV 633 (759)
Q Consensus 554 g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~ 633 (759)
|.++.+-....++.+.|-+..+-+|++ |=... + ..-||.+..|++++++++.+.. +..+
T Consensus 186 GslenR~Rf~~eii~~ir~~~~~~v~v---Ris~~--------d-------~~~~G~~~~e~~~i~~~l~~~g---vD~i 244 (337)
T PRK13523 186 GSPENRYRFLREIIDAVKEVWDGPLFV---RISAS--------D-------YHPGGLTVQDYVQYAKWMKEQG---VDLI 244 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEE---Eeccc--------c-------cCCCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 555555556777888887776666665 21000 0 1237899999999999997642 3444
Q ss_pred EeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCc
Q 044944 634 WFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCS 708 (759)
Q Consensus 634 r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~ 708 (759)
++-.... ...... .....+.++.+++++.. +-.|... =-+.+.++..+.|++ +.+|+|.+||.--.++
T Consensus 245 ~vs~g~~-~~~~~~--~~~~~~~~~~~~ik~~~-~ipVi~~-G~i~~~~~a~~~l~~--g~~D~V~~gR~~iadP 312 (337)
T PRK13523 245 DVSSGAV-VPARID--VYPGYQVPFAEHIREHA-NIATGAV-GLITSGAQAEEILQN--NRADLIFIGRELLRNP 312 (337)
T ss_pred EeCCCCC-CCCCCC--CCccccHHHHHHHHhhc-CCcEEEe-CCCCCHHHHHHHHHc--CCCChHHhhHHHHhCc
Confidence 4432210 000000 00011234556666543 1122221 112334445555554 5699999999865443
No 192
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=34.13 E-value=2.7e+02 Score=31.65 Aligned_cols=36 Identities=6% Similarity=0.057 Sum_probs=17.0
Q ss_pred hcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044944 93 QIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLI 128 (759)
Q Consensus 93 e~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l 128 (759)
+++.+..++..+|-+.+|++--++..+++++.++++
T Consensus 345 ~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~ 380 (449)
T TIGR00400 345 TVKVKDFFKVILREICVSILVGAILASVNFLRIVFF 380 (449)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666555555555433333333333344433
No 193
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=33.51 E-value=38 Score=36.30 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhcc-CCcEEEEccCCCCCccccccCCcCCCCCccchh
Q 044944 655 DNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTE-NFDLFIVGKNHDPCSKVTLGLSEWIEYPELGII 726 (759)
Q Consensus 655 d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~-~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~i 726 (759)
-++..+.+++. .+++.+.......+..+..+++.. +||++|++-+-|.-+.+..||.+=...| ||+|
T Consensus 22 ~~~~~~~l~~~----g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-Lgil 89 (301)
T COG1597 22 LREVEELLEEA----GHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGIL 89 (301)
T ss_pred HHHHHHHHHhc----CCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEe
Confidence 33444455443 344445555444456666666654 5999999999988888888887666665 6654
No 194
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=33.40 E-value=4.5e+02 Score=29.07 Aligned_cols=31 Identities=16% Similarity=0.551 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhcChhHHHhhhhhhHHHHH
Q 044944 81 FGMILHIFVLGVQIDLGLIKHIRRRAVAIGF 111 (759)
Q Consensus 81 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~ 111 (759)
.|..+.++..|.+.|++.+++..++...+++
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l 147 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL 147 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceee
Confidence 6778889999999999999999888876654
No 195
>PRK00536 speE spermidine synthase; Provisional
Probab=31.76 E-value=1.5e+02 Score=31.16 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=8.1
Q ss_pred cCCcEEEEcc
Q 044944 693 ENFDLFIVGK 702 (759)
Q Consensus 693 ~~~DL~iVGr 702 (759)
+.||++|+=.
T Consensus 138 ~~fDVIIvDs 147 (262)
T PRK00536 138 KKYDLIICLQ 147 (262)
T ss_pred CcCCEEEEcC
Confidence 5799999874
No 196
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=31.40 E-value=88 Score=29.31 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCC
Q 044944 526 MHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGK 586 (759)
Q Consensus 526 m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~ 586 (759)
..+.+.++.++++++.||+|...+. ||.........+.+.+++-++-+++| +++|--+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNM--DGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCC--CCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 4688999999999999999987653 56543333457788888877778898 6677644
No 197
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.06 E-value=2.8e+02 Score=30.29 Aligned_cols=135 Identities=10% Similarity=-0.042 Sum_probs=67.2
Q ss_pred cccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeE-EEE
Q 044944 554 CLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNIS-LTV 632 (759)
Q Consensus 554 g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~-ltv 632 (759)
|.++..-....++.+.|-+..+.++-|-+-=+... .+-||.+-+|++++|+++.+...+. ++|
T Consensus 185 GslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~----------------~~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 185 GSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE----------------DTEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh----------------ccCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 55555545677888888888766543322111110 1247889999999999998865322 332
Q ss_pred E--EeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCc
Q 044944 633 V--WFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCS 708 (759)
Q Consensus 633 ~--r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~ 708 (759)
- +.-...+..........+...+-+..+++++.. +..|...= -+.+.++..+++++ +..|++.+||.--.++
T Consensus 249 s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~ipvi~~G-~i~~~~~~~~~l~~--~~~D~V~~gR~~ladP 322 (343)
T cd04734 249 SAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-DLPVFHAG-RIRDPAEAEQALAA--GHADMVGMTRAHIADP 322 (343)
T ss_pred CCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-CCCEEeeC-CCCCHHHHHHHHHc--CCCCeeeecHHhHhCc
Confidence 1 111000000000000011112234555565443 22222211 11234555555544 5699999999865444
No 198
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=30.93 E-value=5e+02 Score=27.43 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHHhcccccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHh-hhcchhhHHHHhhhcc
Q 044944 303 IPVFCAMSGIRWEMYLLKES--STRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIM-CCRGIPEIAMYCMWKD 379 (759)
Q Consensus 303 ~PlFF~~~G~~~dl~~l~~~--~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m-~~kG~v~l~~~~~~~~ 379 (759)
+.+-+...|+.++..++... .........+.-++.-.+.++..++.++.+......+=+.. .|-|....++.....
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~~- 92 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLLK- 92 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHhC-
Confidence 44445667888888776543 12233444445566677777777788777654433322222 444544444333322
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 044944 380 KKTITSQIFALLIANMVIVTSIASAVVGYLY 410 (759)
Q Consensus 380 ~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~ 410 (759)
| |.+.-..++....+.+.++.|+.-.++
T Consensus 93 -g--n~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 93 -G--DMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred -C--CHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223333333333333666777765544
No 199
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=30.63 E-value=7.2e+02 Score=26.89 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=38.1
Q ss_pred hcccccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHh---hhcchhhHHHHhhh
Q 044944 310 SGIRWEMYLLKES--STRKMELIMVMSYIGKFTGVILSSSFF-GISFIKASCLAFIM---CCRGIPEIAMYCMW 377 (759)
Q Consensus 310 ~G~~~dl~~l~~~--~~~~~~~i~~~~~~~K~i~~~l~~~~~-~~~~~~~~~lgl~m---~~kG~v~l~~~~~~ 377 (759)
.|++++++++... .+.......+.-++...+.++..++.+ +.+.. +.+|+++ +|-|..+.+...++
T Consensus 56 mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 56 PLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred hhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 3466666666543 344455555666777777787777754 66643 6666643 44455444444443
No 200
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=30.19 E-value=2.6e+02 Score=29.64 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=73.3
Q ss_pred CceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCC
Q 044944 510 GNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKS 589 (759)
Q Consensus 510 ~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~ 589 (759)
+.-.|=.|.... ..+.+.|++.|++.++.+||--...+-...| ...+....+...+++++||++=-|.|..-
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~- 87 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGMTF- 87 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 345666777777 6889999999999999999977644322211 12466777889999999999988997531
Q ss_pred CCccc-CCCcceEEEEeeccCcChHHHHHHHHHHh---hCCCeEE--EEEEe
Q 044944 590 IRPTF-DFQLSYHIVMLFVGGADDREALAYSRLMV---EHPNISL--TVVWF 635 (759)
Q Consensus 590 ~~~~~-~~~~~~~i~~~f~GG~ddreAL~~a~rma---~~~~v~l--tv~r~ 635 (759)
..+. .-+.....+++=.-..+++|-++.++++. +.-++.+ -+.|+
T Consensus 88 -e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 88 -EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred -HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 0000 00001122222222458899999988775 4444443 34444
No 201
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=30.05 E-value=1e+03 Score=28.44 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 210 YMFPSLFGFYCTMFFLLRPLTIWIVSK 236 (759)
Q Consensus 210 ~~~~~~~~~~~~~~~v~r~~~~~l~~~ 236 (759)
..++..++...++++++.|...|+...
T Consensus 417 ~Pllt~li~~~l~~~viGp~~~~i~~~ 443 (631)
T PRK09765 417 YPVLGTLGAGSLMLFVVGEPVAWINNS 443 (631)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666777777776543
No 202
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=29.90 E-value=2.7e+02 Score=30.17 Aligned_cols=46 Identities=28% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044944 83 MILHIFVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLI 128 (759)
Q Consensus 83 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l 128 (759)
+-+..|..|..+|++.+.+.+-+...+++..++++..+++....++
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 3445566788888888888888888888777777777666666555
No 203
>PRK01658 holin-like protein; Validated
Probab=29.45 E-value=4.5e+02 Score=24.10 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCch---hHHHHHHHHhcCcccccCcCCCcCCCCchHHHH-----HHHHHHHHHHH
Q 044944 16 PVLLLQMVVIFLSTRAIYFLLRPFHQTT---VMAQILGGAIIGPSILGDDTSTLFPMRNRHILR-----TFAEFGMILHI 87 (759)
Q Consensus 16 ~~~ll~l~lil~~~~l~~~l~~rl~~P~---iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~-----~l~~lgl~~ll 87 (759)
..++.|+.+++.+..+...+.+-++.|- ++|.++-=+.+ .++.+. .++.+ .++++++.|+=
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~~~~ik--------~~~v~~~a~~Ll~~m~llFVP 72 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---SFKILK--------LKWIELGAETLLAELPLFFIP 72 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---HhCCcC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888777777777666553 33333211111 122332 12222 33444444444
Q ss_pred HHHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 044944 88 FVLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFR 126 (759)
Q Consensus 88 F~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~ 126 (759)
=.+|+=-..+.+++++.+....-+.+.++.++.+..+..
T Consensus 73 a~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~ 111 (122)
T PRK01658 73 SAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQ 111 (122)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666667777777776666666666665555444433
No 204
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=29.25 E-value=96 Score=34.83 Aligned_cols=50 Identities=10% Similarity=0.218 Sum_probs=33.8
Q ss_pred HHHHHhhhhcCCCCeEEEEEEe---CChhhHHHHHHhhcc--CCcEEEEccCCCC
Q 044944 657 HAFDEFKDSVVTKKITLRVEIV---KDGIGTTRVIQTLTE--NFDLFIVGKNHDP 706 (759)
Q Consensus 657 ~~~~~~~~~~~~~~v~~~e~~v---~~~~e~~~~i~~~~~--~~DL~iVGr~~~~ 706 (759)
+.+...+.+...-++.+-...| +.+.|++++|+..+. ++|.+||||++|.
T Consensus 151 DIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 151 DILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 4666666666323444433333 456788888888755 4999999999874
No 205
>PRK04148 hypothetical protein; Provisional
Probab=29.00 E-value=81 Score=29.45 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=31.0
Q ss_pred EEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCC
Q 044944 516 HFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQW 550 (759)
Q Consensus 516 ~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~ 550 (759)
-..++=|...|+..|.++|++.++|++|-|.....
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 46677899999999999999999999999987654
No 206
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=27.98 E-value=8e+02 Score=26.58 Aligned_cols=98 Identities=10% Similarity=0.104 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhc------ccCCCCcch-HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhH
Q 044944 221 TMFFLLRPLTIWIVSKT------AEGESMKQS-HFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNK 293 (759)
Q Consensus 221 ~~~~v~r~~~~~l~~~~------~~~~~~~e~-~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~k 293 (759)
....+-+|+++++..+. +..+++++. -+.+-+....+++.+. =.-.+.+|.+.+|-.+.+.. ..+++.+-
T Consensus 161 LvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrEsG-v~~rl~~t 237 (354)
T TIGR01109 161 LVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRESG-VVERLSKT 237 (354)
T ss_pred HHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhc-cHHHHHHH
Confidence 34445567776664332 111223222 2444444444444442 23468899999999999853 33444444
Q ss_pred HhhhhhhhhHHHHHHHhccccccccccc
Q 044944 294 LDFFTSGFLIPVFCAMSGIRWEMYLLKE 321 (759)
Q Consensus 294 l~~~~~~~~~PlFF~~~G~~~dl~~l~~ 321 (759)
.+.-......-+.=..+|...+-+.+.+
T Consensus 238 aqn~l~nivTifLGl~vG~~~~A~~fL~ 265 (354)
T TIGR01109 238 ASNELLNIVTILLGLSVGAKMRADKFLT 265 (354)
T ss_pred HHHHHHHHHHHHHHHHhhhhccHHhhCC
Confidence 4433333334444567788777665543
No 207
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=27.79 E-value=4.6e+02 Score=25.35 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred eeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhH
Q 044944 605 LFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGT 684 (759)
Q Consensus 605 ~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~ 684 (759)
+..||- ..-...+|+.|+++-..++-++.=-+ ..+.-+++.+++++.. ..+|.|...-+.|.+++
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~r~~------------~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d~~~v 68 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLGRSG------------APSAEAEAAIRELESA--GARVEYVQCDVTDPEAV 68 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEESSG------------GGSTTHHHHHHHHHHT--T-EEEEEE--TTSHHHH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEeccCC------------CccHHHHHHHHHHHhC--CCceeeeccCccCHHHH
Confidence 444554 67899999999999987766554321 1112333577777664 46899999889999999
Q ss_pred HHHHHhhccCC---cEEEEccCC
Q 044944 685 TRVIQTLTENF---DLFIVGKNH 704 (759)
Q Consensus 685 ~~~i~~~~~~~---DL~iVGr~~ 704 (759)
.+.+.+...++ |-+|-+.+.
T Consensus 69 ~~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 69 AAALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp HHHHHTSHTTSS-EEEEEE----
T ss_pred HHHHHHHHhccCCcceeeeeeee
Confidence 99988876554 557666654
No 208
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.65 E-value=4.7e+02 Score=26.48 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=53.5
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEEEEEccCCCh--HHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHh
Q 044944 492 ASSTHLINAFAQLERSYHGNIVVQHFTTIAPYASM--HDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGN 569 (759)
Q Consensus 492 ~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m--~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~ 569 (759)
....++.+.+++..+.+.. .+. ...+ ..+. -.+..+.....++|-||+.-. +. .+. .. +
T Consensus 12 ~~~~~~~~gi~~~~~~~~~--~~~--~~~~-~~~~~~~~~~i~~l~~~~~dgiii~~~-----~~----~~~----~~-~ 72 (265)
T cd06285 12 TVMATMYEGIEEAAAERGY--STF--VANT-GDNPDAQRRAIEMLLDRRVDGLILGDA-----RS----DDH----FL-D 72 (265)
T ss_pred ccHHHHHHHHHHHHHHCCC--EEE--EEeC-CCCHHHHHHHHHHHHHcCCCEEEEecC-----CC----ChH----HH-H
Confidence 3456777777776655432 222 2222 2222 235666778889997776411 00 111 12 2
Q ss_pred hhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEE
Q 044944 570 ILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVV 633 (759)
Q Consensus 570 vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~ 633 (759)
-+++++.+| |++||.... ..+++..+.+.+-..++.+.++-.-++-++
T Consensus 73 ~~~~~~iPv-v~~~~~~~~---------------~~~V~~d~~~ag~~a~~~L~~~g~~~i~~i 120 (265)
T cd06285 73 ELTRRGVPF-VLVLRHAGT---------------SPAVTGDDVLGGRLATRHLLDLGHRRIAVL 120 (265)
T ss_pred HHHHcCCCE-EEEccCCCC---------------CCEEEeCcHHHHHHHHHHHHHCCCccEEEE
Confidence 345677788 778885311 123343444444445555666555554443
No 209
>PRK01821 hypothetical protein; Provisional
Probab=27.44 E-value=5.1e+02 Score=24.14 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCch---hHHHHHHHHhcCcccccCcCCCcCCCCchHHHH-----HHHHHHHHHHHH
Q 044944 17 VLLLQMVVIFLSTRAIYFLLRPFHQTT---VMAQILGGAIIGPSILGDDTSTLFPMRNRHILR-----TFAEFGMILHIF 88 (759)
Q Consensus 17 ~~ll~l~lil~~~~l~~~l~~rl~~P~---iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~-----~l~~lgl~~llF 88 (759)
.++.|+.+++.+..+...+.+-++.|- ++|.++-=+.+ .++.+. .+.++ .++++++.|+==
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L---~~~~vk--------~~~v~~~a~~LL~~m~LfFVPa 78 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLL---ALQILP--------AKWVKPGCSLLIRYMALLFVPI 78 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcC--------HHHHHHHHHHHHHHHHHHHhhh
Confidence 456778888877777777777677553 23332211111 123332 12222 333444444444
Q ss_pred HHhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 044944 89 VLGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSF 125 (759)
Q Consensus 89 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~ 125 (759)
.+|+=...+.++.++.+....-+.+.++.++.+..+.
T Consensus 79 ~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~ 115 (133)
T PRK01821 79 GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSS 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666777666665555555555555444333
No 210
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=27.25 E-value=1.3e+02 Score=27.01 Aligned_cols=54 Identities=22% Similarity=0.418 Sum_probs=29.0
Q ss_pred Cccc-cCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCcc
Q 044944 4 GIWH-HNPLQSTTPVLLLQMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPS 57 (759)
Q Consensus 4 g~~~-~~pl~~~l~~~ll~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~ 57 (759)
|... ..|+.|++|-=...-.+.-+-..++-..+....--.+.-.++.|++.||+
T Consensus 56 g~i~~RTPlTHT~pRSv~WGli~slp~i~~l~~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 56 GYIPVRTPLTHTLPRSVLWGLIPSLPLIILLYYYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred CcceecCCCccCcchhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhccchH
Confidence 4444 78999998854333222222111111222222334456678899999996
No 211
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=26.92 E-value=1.3e+02 Score=28.60 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=24.7
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEee
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFV 636 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~ 636 (759)
|+++.|-||+|+--.|.++.+...+- .++++-
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~d 32 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFID 32 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEe
Confidence 57899999999999999999998874 556553
No 212
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=26.13 E-value=9.7e+02 Score=26.92 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=63.7
Q ss_pred hHHHhHHhhhhh-----hhhHHHHHHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH-HHH
Q 044944 288 TQLVNKLDFFTS-----GFLIPVFCAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFFGISFIKASC-LAF 361 (759)
Q Consensus 288 ~~l~~kl~~~~~-----~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~-lgl 361 (759)
+...+.++.+.+ .|++...-+-+=+.+|-..+.+. ....+..++.+.++-++.+.+.+.++|.+++|+++ +.+
T Consensus 80 ~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika-~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~l 158 (414)
T PF03390_consen 80 ESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKA-FARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVL 158 (414)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 344454444432 23333333333344454444443 33345555667777788888889999999999864 333
Q ss_pred -Hhhhc---chhhHHHHhhhcc--cCcCchhHHHHHHHHHHHH---HHHHHHHHHHhcCccccchh
Q 044944 362 -IMCCR---GIPEIAMYCMWKD--KKTITSQIFALLIANMVIV---TSIASAVVGYLYDPSRRYKL 418 (759)
Q Consensus 362 -~m~~k---G~v~l~~~~~~~~--~~~i~~~~~~~~v~~~lv~---t~i~~plv~~l~~~~~~~~~ 418 (759)
+|+.- |.+.+- ..++ .+.-.++.++.++-++++- ..+.+-+++.+-++..++.+
T Consensus 159 PIMgGG~GaGavPLS---~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltG 221 (414)
T PF03390_consen 159 PIMGGGMGAGAVPLS---QIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTG 221 (414)
T ss_pred hhcCCCccccHhHHH---HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 23221 222222 1221 2333345555555444442 33344455666555444433
No 213
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=25.53 E-value=9.8e+02 Score=26.77 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccchhhHHHHHH
Q 044944 252 ICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKESSTRKMELIM 331 (759)
Q Consensus 252 l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~~~~~~~~i~ 331 (759)
+.+.+..+.++..+.=..++|++.+-+++.. ++.| --...|+|+...| +..-..+.+. + .-++.+
T Consensus 196 isLGl~~~ai~~ll~~~~~~as~~F~LAlny---------KQMe---LY~A~pfF~fLLg-~c~k~k~~~~-f-~ri~~i 260 (510)
T KOG2575|consen 196 ISLGLTLYAIAALLKNFYVLASVLFVLALNY---------KQME---LYHALPFFAFLLG-SCLKPKLFNS-F-ARIIKI 260 (510)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH---------HHHH---HHhchHHHHHHHH-HHhcccchHH-H-HHHHHH
Confidence 3445556667777777888999999888775 1122 2235588888888 5544444432 2 233444
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhhHHHHhhhcccC-------cCchhHHHHHHHHHHHHHHHHHH
Q 044944 332 VMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPEIAMYCMWKDKK-------TITSQIFALLIANMVIVTSIASA 404 (759)
Q Consensus 332 ~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~l~~~~~~~~~~-------~i~~~~~~~~v~~~lv~t~i~~p 404 (759)
.+..++-+...|++-...+-...+-+. =+-=-.||..|=-+++.+-... +...+....+.++..+ -...+.
T Consensus 261 a~~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tl-i~~LPs 338 (510)
T KOG2575|consen 261 ALAVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATL-IGSLPS 338 (510)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHhHH
Confidence 455667788888887777744433221 1112468988888888775333 3334444444444333 222444
Q ss_pred HHHHhcCccccchhh
Q 044944 405 VVGYLYDPSRRYKLD 419 (759)
Q Consensus 405 lv~~l~~~~~~~~~~ 419 (759)
.+....+|+++-..|
T Consensus 339 ~v~l~L~P~~~~f~~ 353 (510)
T KOG2575|consen 339 MVVLFLRPTNKGFLY 353 (510)
T ss_pred HHHHhhcccccchhh
Confidence 566666787764443
No 214
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=25.30 E-value=9.1e+02 Score=26.30 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHcccCCchhHHHHHHHHhcCccccc-CcCCCcCCCCchHHHHHHHHHHH------HHHHHHHhhh
Q 044944 21 QMVVIFLSTRAIYFLLRPFHQTTVMAQILGGAIIGPSILG-DDTSTLFPMRNRHILRTFAEFGM------ILHIFVLGVQ 93 (759)
Q Consensus 21 ~l~lil~~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg-~~~~~~fp~~~~~~l~~l~~lgl------~~llF~~Gle 93 (759)
|+..+.+-..+++.-.+|---|.+.-.|=.|+++...-+. ..+..... .....+..+-+.|+ .++.+-+|--
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~-~~~g~l~~~~~~gi~~~l~P~LIF~GIGAm 82 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGG-GEIGGLQPIYYFGISNGLFPPLIFMGIGAM 82 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhccccccc-CCCChHHHHHHHhhhcchhhHHHHHHHhHH
Confidence 4556666666777777887889999999999988754322 21110000 11223333333332 3444557888
Q ss_pred cChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhccHHHHHHHHHhccccCChhH
Q 044944 94 IDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMTSLVVVTSVLKELNMLNSELG 173 (759)
Q Consensus 94 ~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~l~~s~~g 173 (759)
+|+.-+..+.|..+.=+..++- . +.++..+..++... .++..+|++-..=.+-.+.- ..++.+.-+|
T Consensus 83 tDFgpllanP~~~llGaaAQ~G-i-f~t~~~A~~lGf~~--------~eAAsIgIIGgADGPtsIf~---s~~LAp~Llg 149 (360)
T PF03977_consen 83 TDFGPLLANPKTLLLGAAAQFG-I-FATFLGAILLGFTP--------KEAASIGIIGGADGPTSIFV---SSKLAPHLLG 149 (360)
T ss_pred HhhHHHHhCHHHHHHHHHHHHh-H-HHHHHHHHHhCCCH--------HHhhHhhhcccCCCcHHHHH---HHhhhHHHHH
Confidence 9999999888874433332221 1 12233334444332 35556665554433211111 1122221122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCCCCcch-
Q 044944 174 RLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFLLRPLTIWIVSKT------AEGESMKQS- 246 (759)
Q Consensus 174 ~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~------~~~~~~~e~- 246 (759)
-+++++ -.+......+-+|+++-+..+. ++.+++++.
T Consensus 150 pIaVaA------------------------------------YsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~e 193 (360)
T PF03977_consen 150 PIAVAA------------------------------------YSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTE 193 (360)
T ss_pred HHHHHH------------------------------------HHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHH
Confidence 111110 0123333445566666554321 222333333
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhccccccccccc
Q 044944 247 HFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKE 321 (759)
Q Consensus 247 ~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~ 321 (759)
-+.+-+....+++.+. =.-.+.+|.+.+|-.+.+.. ..+++.+-.+.-...+..-+.=..+|...+-+.+.+
T Consensus 194 kiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rEsg-v~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~ 265 (360)
T PF03977_consen 194 KIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRESG-VVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLN 265 (360)
T ss_pred HHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcC
Confidence 2444444444444442 23468899999999999854 334444444433333344444567788777665543
No 215
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.22 E-value=8.8e+02 Score=26.10 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=12.0
Q ss_pred HHHHHHHHhccccCChh
Q 044944 156 VVVTSVLKELNMLNSEL 172 (759)
Q Consensus 156 ~vv~~iL~el~l~~s~~ 172 (759)
|++.++.++.|+.+++.
T Consensus 118 Pi~~~~~~~~~i~~~~~ 134 (351)
T PF03600_consen 118 PIVLSLARKLGIPPSPL 134 (351)
T ss_pred HHHHHHHHHcCCChHHH
Confidence 78888888887654443
No 216
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=24.68 E-value=15 Score=32.37 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=0.0
Q ss_pred eCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhh
Q 044944 678 VKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIG 727 (759)
Q Consensus 678 v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~ig 727 (759)
.+|.+++.+..++ ++.||+|||- +.|+..|+.|.-+..-+-++|
T Consensus 48 ~~d~~~l~~~a~~--~~idlvvvGP----E~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 48 ITDPEELADFAKE--NKIDLVVVGP----EAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TT-HHHHHHHHHH--TTESEEEESS----HHHHHTTHHHHHHHTT-CEES
T ss_pred CCCHHHHHHHHHH--cCCCEEEECC----hHHHHHHHHHHHHHCCCcEEC
No 217
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=24.57 E-value=1e+03 Score=26.78 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=22.9
Q ss_pred HHHHHHHHHcccCCchhHHHHHHHHhcCcccccCcC
Q 044944 28 STRAIYFLLRPFHQTTVMAQILGGAIIGPSILGDDT 63 (759)
Q Consensus 28 ~~~l~~~l~~rl~~P~iv~~IlaGiilGP~~lg~~~ 63 (759)
+-.+...+-++.++|+-..-.+++++.= .+|...
T Consensus 11 ~~~l~~~~~~p~~~~~~~~a~~Ga~l~l--~~giv~ 44 (424)
T COG1055 11 IFTLVYVLIRPRKLPRAWAALLGALLAL--FLGIVT 44 (424)
T ss_pred HHHHHHHhhhcCcCchHHHHHHHHHHHH--HHcCCC
Confidence 3334555667788999999988887653 355554
No 218
>COG3371 Predicted membrane protein [Function unknown]
Probab=24.41 E-value=4.3e+02 Score=25.97 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=41.1
Q ss_pred ccCCchhHHHHHHHHhcCcccccCcCCCcCCCCchHHHHHHHHHHHHHHHHHHhhhcChhHHHhhhhhhHH
Q 044944 38 PFHQTTVMAQILGGAIIGPSILGDDTSTLFPMRNRHILRTFAEFGMILHIFVLGVQIDLGLIKHIRRRAVA 108 (759)
Q Consensus 38 rl~~P~iv~~IlaGiilGP~~lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ 108 (759)
|.+-+.-.-++++|+.+. ..|. ||++. .-..+..+.+-+++|.+.+-+.....+++.+....
T Consensus 73 k~~~~g~~ll~is~lfLa--LVGV-----FpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~ 134 (181)
T COG3371 73 KIENYGGALLIISGLFLA--LVGV-----FPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGL 134 (181)
T ss_pred HhhhcchHHHHHHHHHHH--heee-----CCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 566666666778888776 2343 44433 44567777788888988888888877775554443
No 219
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=24.22 E-value=3.2e+02 Score=28.55 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=18.7
Q ss_pred EEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEe
Q 044944 602 IVMLFVGGADDREALAYSRLMVEHPNISLTVVWF 635 (759)
Q Consensus 602 i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~ 635 (759)
+++.|-||+|+-..|.+|.+...+ +.|+++
T Consensus 42 ~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~ 71 (261)
T COG0175 42 VVVSFSGGKDSTVLLHLAAKAFPD----FPVIFL 71 (261)
T ss_pred eEEEecCchhHHHHHHHHHHhcCC----CcEEEE
Confidence 566666777776666666666655 444444
No 220
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=24.00 E-value=3.2e+02 Score=31.88 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHhcccccccccccc--hhhH------HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhhcchhh
Q 044944 299 SGFLIPVFCAMSGIRWEMYLLKES--STRK------MELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIMCCRGIPE 370 (759)
Q Consensus 299 ~~~~~PlFF~~~G~~~dl~~l~~~--~~~~------~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~v~ 370 (759)
..+++|---.-.|.+++-..+... +... .+..++++...|+.+. .....+++++|.+++|-+.+.---|.
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVt 179 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVT 179 (575)
T ss_pred HHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchH
Confidence 455666655667888886655433 1110 0111122333344333 33456899999999999887766555
Q ss_pred HH
Q 044944 371 IA 372 (759)
Q Consensus 371 l~ 372 (759)
..
T Consensus 180 vL 181 (575)
T KOG1965|consen 180 VL 181 (575)
T ss_pred HH
Confidence 43
No 221
>PRK01844 hypothetical protein; Provisional
Probab=23.82 E-value=2.8e+02 Score=22.89 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHH
Q 044944 212 FPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFI 249 (759)
Q Consensus 212 ~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~ 249 (759)
++++++-.+.++|+.|..+..-++.+| |..|-.+.
T Consensus 11 I~~li~G~~~Gff~ark~~~k~lk~NP---pine~mir 45 (72)
T PRK01844 11 VVALVAGVALGFFIARKYMMNYLQKNP---PINEQMLK 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHH
Confidence 334444455667777877777777766 45555443
No 222
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=23.63 E-value=1.6e+02 Score=27.18 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=42.8
Q ss_pred CChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCC
Q 044944 524 ASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGK 586 (759)
Q Consensus 524 ~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~ 586 (759)
....+.+.++.++.+++.||+|...+. ||.........+.+-+++-++-+.+| .++|-.+
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~~--dG~~~~~a~~v~~f~~~L~~~~~~~v-~~~DEr~ 93 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLNM--DGTEGPLTERAQKFANRLEGRFGVPV-VLWDERL 93 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCCC--CcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 455688999999999999999987764 56533333456777777766668888 4566543
No 223
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=22.82 E-value=4.5e+02 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=20.1
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEEEe
Q 044944 609 GADDREALAYSRLMVEHPNISLTVVWF 635 (759)
Q Consensus 609 G~ddreAL~~a~rma~~~~v~ltv~r~ 635 (759)
.+.|.|+++.|+||++ .+.+++++-+
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~ 43 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVI 43 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEE
Confidence 5789999999999987 4455665554
No 224
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=22.77 E-value=6.8e+02 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHhHHhhhhhhhhHHHHHHHhccccccc
Q 044944 290 LVNKLDFFTSGFLIPVFCAMSGIRWEMY 317 (759)
Q Consensus 290 l~~kl~~~~~~~~~PlFF~~~G~~~dl~ 317 (759)
+...++..+++-+|.+||..+|+.+.-+
T Consensus 58 ~~~~l~~wiNDgLMaiFFf~vGLEiKrE 85 (423)
T PRK14853 58 LSLSLGTWAADGLLAIFFFVVGLELKRE 85 (423)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHhHH
Confidence 3445666778899999999999999643
No 225
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=22.66 E-value=1.8e+02 Score=27.37 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCC
Q 044944 526 MHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRG 585 (759)
Q Consensus 526 m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg 585 (759)
-.+.+.++.++.+++.|++|+..+. ||.........+.+-+++-++-+++| +++|.-
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m--~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNM--DGTEGPRAELARKFAERLKKRFNLPV-VLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCC--CCCcchhHHHHHHHHHHHHHhcCCCE-EEEcCc
Confidence 4578889999999999999987653 44433333457888888888889998 667763
No 226
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=22.49 E-value=1.3e+02 Score=33.39 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=22.8
Q ss_pred HhHHhhhhhhhhHHHHHHHhccccccccc
Q 044944 291 VNKLDFFTSGFLIPVFCAMSGIRWEMYLL 319 (759)
Q Consensus 291 ~~kl~~~~~~~~~PlFF~~~G~~~dl~~l 319 (759)
...++..+++.++.+||..+|+.+.-+.+
T Consensus 56 ~~sl~~wiNDgLMaiFFf~vGLEiKrE~~ 84 (389)
T PRK09560 56 GKSLLHWINDGLMAVFFLLVGLEIKRELL 84 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888999999999999975443
No 227
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=22.10 E-value=3.7e+02 Score=24.39 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=48.7
Q ss_pred CceEEEEEeeeecCCcccccccccc--ccc-cccc-chhHHHHHHHHHHHhcCCceEEEEEEEEccCCChHHHHHHHHhh
Q 044944 461 PITAFVLQLIELKGSVTAFLKPYHQ--HTQ-SVVA-SSTHLINAFAQLERSYHGNIVVQHFTTIAPYASMHDDVCTLALD 536 (759)
Q Consensus 461 p~~v~~lhLvel~~r~~~~~~~~~~--~~~-~~~~-~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~ 536 (759)
.-.|.-+|++|.++- .+.+..++- ... .-.. .-+...+-++...+.....+-+..-. -+..+.+++.+.|++
T Consensus 22 ~r~V~~v~v~e~~d~-~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~---~~~~iP~~~i~~A~~ 97 (123)
T PF07905_consen 22 DRPVRWVHVMEAPDP-SDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGR---YLDEIPEEIIELADE 97 (123)
T ss_pred CCcEEEEEEeecCCH-HHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccC---ccccCCHHHHHHHHH
Confidence 357888888888742 233333322 111 1111 11234555555554433333333321 234788999999999
Q ss_pred cCCcEEEecCCCC
Q 044944 537 KRAAIIIVPFHKQ 549 (759)
Q Consensus 537 ~~~~lIilp~h~~ 549 (759)
++-.++.+||+-+
T Consensus 98 ~~lPli~ip~~~~ 110 (123)
T PF07905_consen 98 LGLPLIEIPWEVP 110 (123)
T ss_pred cCCCEEEeCCCCC
Confidence 9999999998543
No 228
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=22.02 E-value=1.8e+02 Score=32.12 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=22.2
Q ss_pred hHHhhhhhhhhHHHHHHHhccccccccc
Q 044944 292 NKLDFFTSGFLIPVFCAMSGIRWEMYLL 319 (759)
Q Consensus 292 ~kl~~~~~~~~~PlFF~~~G~~~dl~~l 319 (759)
..++..+++.++.+||..+|+.+.-+.+
T Consensus 54 ~~l~~WiNDgLMaiFFf~vGLEiKrE~~ 81 (383)
T PRK14854 54 KNLMHWINDGLMAIYFLYIGLEIKREII 81 (383)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556667889999999999999975433
No 229
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=21.92 E-value=8.6e+02 Score=24.83 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=22.3
Q ss_pred HhhhcChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044944 90 LGVQIDLGLIKHIRRRAVAIGFFGCLIPLIFGMSSFRL 127 (759)
Q Consensus 90 ~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~~~~~~~~~ 127 (759)
.|+-..+..+ ++|....++....++.++++..+...
T Consensus 20 ~GlglGfs~l--s~k~~~~i~~~Y~~l~~~l~~i~~~~ 55 (224)
T PF09930_consen 20 TGLGLGFSNL--SRKEIALIALGYGLLFLLLGYIASPI 55 (224)
T ss_pred HHHHhccccc--cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555 35666677777667677776666554
No 230
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=21.87 E-value=1.3e+03 Score=27.62 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=32.9
Q ss_pred HHcccCCchhHHHHHHHHhcCccc--ccCcCCCcCCCCchHHHHHHHHHHHHHHHHH
Q 044944 35 LLRPFHQTTVMAQILGGAIIGPSI--LGDDTSTLFPMRNRHILRTFAEFGMILHIFV 89 (759)
Q Consensus 35 l~~rl~~P~iv~~IlaGiilGP~~--lg~~~~~~fp~~~~~~l~~l~~lgl~~llF~ 89 (759)
+...+|+|+++.-+++|..++-++ +..+.+.-+.+.+.--.+.-+.+|.++.++.
T Consensus 392 i~~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNpLa~P~ilGi~sgA~lg~~~~~~~ 448 (668)
T PRK10577 392 ALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFL 448 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHhhHHHHHHHHHHHHHHH
Confidence 567789999999999999998554 2222111111222334455556776665554
No 231
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=21.54 E-value=1.3e+03 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=8.5
Q ss_pred hHHHHHHHhhcCC
Q 044944 270 FLGCFVFGLCLPD 282 (759)
Q Consensus 270 ~lGafvaGl~i~~ 282 (759)
.+|+++.|.+...
T Consensus 357 ~lGsll~G~la~~ 369 (524)
T PF05977_consen 357 PLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHHHHH
Confidence 4677777766554
No 232
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.47 E-value=9.6e+02 Score=25.21 Aligned_cols=170 Identities=12% Similarity=0.073 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCcEEEecCCCCCccc-c-ccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEe
Q 044944 528 DDVCTLALDKRAAIIIVPFHKQWGVN-C-LVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVML 605 (759)
Q Consensus 528 ~dI~~~A~~~~~~lIilp~h~~~~~~-g-~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~ 605 (759)
.+..+.+++.++|.|=+-++-..... | .+..+-....++.+.|-+...++|.+ ++
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v--------------------Kl--- 161 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV--------------------KL--- 161 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE--------------------Ee---
Confidence 34445556778999988765433221 1 12222235666777776665677655 21
Q ss_pred eccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCC----CCCC-------CCCCCCcchhhHHHHHHHhhhhcCCCCeEEE
Q 044944 606 FVGGADDREALAYSRLMVEHPNISLTVVWFVSSD----PDTS-------SGIETTDDRDLDNHAFDEFKDSVVTKKITLR 674 (759)
Q Consensus 606 f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~----~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~ 674 (759)
++|..|..++|+++.+..---+++..-.... .+.. ........+...-+.+.++++.. +-.+..
T Consensus 162 ---~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~- 236 (296)
T cd04740 162 ---TPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIG- 236 (296)
T ss_pred ---CCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCCEEE-
Confidence 2444577788877665542224544221110 0000 00000112233446677776643 111221
Q ss_pred EEEeCChhhHHHHHHhhccCCcEEEEccCCCCC----ccccccCCcCCCCCccchhhh
Q 044944 675 VEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPC----SKVTLGLSEWIEYPELGIIGD 728 (759)
Q Consensus 675 e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~----~~~~~gl~~w~e~~eLG~igd 728 (759)
.=-+.++++..+.++ ...|++.+||.--.+ ..+..||.+|.|..-..-+.|
T Consensus 237 ~GGI~~~~da~~~l~---~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~~~~ 291 (296)
T cd04740 237 VGGIASGEDALEFLM---AGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKSIEE 291 (296)
T ss_pred ECCCCCHHHHHHHHH---cCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 111235666666664 347999999985333 234667777766544444444
No 233
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=20.97 E-value=7.6e+02 Score=25.45 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=19.0
Q ss_pred HHHHHhhhcChhHHHhhhhhhHHHHH
Q 044944 86 HIFVLGVQIDLGLIKHIRRRAVAIGF 111 (759)
Q Consensus 86 llF~~Gle~d~~~l~~~~~~~~~ia~ 111 (759)
..+..|.+++++.+|+..+..-+-|.
T Consensus 119 ~~yE~g~~Ltvenvrk~sr~HpRCGT 144 (236)
T PF07136_consen 119 NCYEAGEELTVENVRKYSRLHPRCGT 144 (236)
T ss_pred HhhcCCCCCCHHHHHhcCCcCCCcch
Confidence 45678889988888887776555444
No 234
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=20.95 E-value=7.8e+02 Score=23.95 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=34.6
Q ss_pred HHHhcccccccccccc--hhhHHHHHHHHHHHHHHHHHHHHH-HhhCCChHHHHHHHHH-hhhcchhhHHHHhh
Q 044944 307 CAMSGIRWEMYLLKES--STRKMELIMVMSYIGKFTGVILSS-SFFGISFIKASCLAFI-MCCRGIPEIAMYCM 376 (759)
Q Consensus 307 F~~~G~~~dl~~l~~~--~~~~~~~i~~~~~~~K~i~~~l~~-~~~~~~~~~~~~lgl~-m~~kG~v~l~~~~~ 376 (759)
....|.+++++++... .......-.+.-++...+.++..+ ++++.+...+..+-+. .+|-|.........
T Consensus 8 mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l 81 (187)
T PF01758_consen 8 MFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYL 81 (187)
T ss_dssp HHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3456778888777644 222233444455667777778777 6666665544333332 34445544444433
No 235
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=20.92 E-value=2.6e+02 Score=29.65 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=28.4
Q ss_pred hhHHHHHHHhhhhc-------CCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCC
Q 044944 653 DLDNHAFDEFKDSV-------VTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHD 705 (759)
Q Consensus 653 ~~d~~~~~~~~~~~-------~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~ 705 (759)
++|+++++.-++.. .++|+. ..+.||.+ .+++-.+.||++|+=-..+
T Consensus 107 EID~~Vi~~ar~~l~~~~~~~~dpRv~---i~i~Dg~~---~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 107 EIDPAVIELARKYLPEPSGGADDPRVE---IIIDDGVE---FLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred EcCHHHHHHHHHhccCcccccCCCceE---EEeccHHH---HHHhCCCcCCEEEEcCCCC
Confidence 34555555444322 124544 66777755 6666656899999976644
No 236
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=20.78 E-value=8.1e+02 Score=24.08 Aligned_cols=125 Identities=14% Similarity=0.226 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHH--HhchhhhHHHHHHHhhcCCCCCchhHHHhHHhhh-
Q 044944 221 TMFFLLRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGT--CFGQGSFLGCFVFGLCLPDGPPLGTQLVNKLDFF- 297 (759)
Q Consensus 221 ~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~--~~G~~~~lGafvaGl~i~~~~~~~~~l~~kl~~~- 297 (759)
+...+..|..-.+..|.|+. .......+...++.....+ ..-...+++++++=++...+ ..++.-...+...
T Consensus 39 i~ali~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g-~y~~~~~~~iay~v 113 (186)
T PF09605_consen 39 IAALICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKG-GYKSKKRNTIAYAV 113 (186)
T ss_pred HHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence 34445566666777777652 2222222222222222222 23345667777777777654 3333332322211
Q ss_pred ----hhhhhHHHHHHHhccc---------cc-ccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 044944 298 ----TSGFLIPVFCAMSGIR---------WE-MYLLKES-STRKMELIMVMSYIGKFTGVILSSSFFG 350 (759)
Q Consensus 298 ----~~~~~~PlFF~~~G~~---------~d-l~~l~~~-~~~~~~~i~~~~~~~K~i~~~l~~~~~~ 350 (759)
..+-+.|++|..-... -+ .+.+.+. +.+...++++..+++=++|++++.+..|
T Consensus 114 f~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 114 FSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256778887654443 11 1111111 2334566666777888888888877664
No 237
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=20.75 E-value=1.1e+03 Score=25.54 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=64.4
Q ss_pred hhhHHHHHHHhcccccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHh---hhcchhhHHHH
Q 044944 300 GFLIPVFCAMSGIRWEMYLLKES--STRKMELIMVMSYIGKFTGVILSSSFFGISFIKASCLAFIM---CCRGIPEIAMY 374 (759)
Q Consensus 300 ~~~~PlFF~~~G~~~dl~~l~~~--~~~~~~~i~~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m---~~kG~v~l~~~ 374 (759)
..++-+.|...|+++..+++... .|...++.++.-++.=.+.++..++.+++| +.++.|+++ +|-|..+.++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHHHHH
Confidence 34455566667999988776544 566677777777788888888888888755 456666654 56676665555
Q ss_pred hhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 044944 375 CMWKDKKTITSQIFALLIANMVIVTSIASAVVGYLY 410 (759)
Q Consensus 375 ~~~~~~~~i~~~~~~~~v~~~lv~t~i~~plv~~l~ 410 (759)
..+. |-..- .-....++.++ +.+.+|++-+++
T Consensus 119 ~lAk--GnVal-sV~~tsvStll-~~f~tPllv~l~ 150 (319)
T COG0385 119 YLAK--GNVAL-SVCSTSVSTLL-GPFLTPLLVGLL 150 (319)
T ss_pred HHhc--CcHHH-HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5544 32211 11222333344 556777755543
No 238
>PRK14561 hypothetical protein; Provisional
Probab=20.68 E-value=1.6e+02 Score=29.22 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.7
Q ss_pred EEEEeeccCcChHHHHHHHHHH
Q 044944 601 HIVMLFVGGADDREALAYSRLM 622 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rm 622 (759)
+|++.|-||.|.--.+..+.+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~ 23 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF 23 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc
Confidence 7899999999999988877654
No 239
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=20.66 E-value=3.3e+02 Score=26.53 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEe
Q 044944 526 MHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVML 605 (759)
Q Consensus 526 m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~ 605 (759)
..+++.+.+++.+....-..-+++.... . +...+..-.++.+++.....-+++|+|... +=.++
T Consensus 90 y~~~i~~~l~~~g~~v~~~dr~~ep~~~---~-eg~tm~w~i~~a~~~~~~~PdvIyd~G~~G------------kEp~i 153 (170)
T PF10120_consen 90 YDEEIIEALEELGLKVSEFDRSEEPEEV---K-EGGTMPWGIEEAFRELGEVPDVIYDRGGWG------------KEPMI 153 (170)
T ss_dssp --HHHHHHHHCTTSEEEE--CCCS-CCC---H-TT-HHHHHHHHHHHCCTS-ECEEEE--BCT------------B--EE
T ss_pred cCHHHHHHHHHCCCeEEEECCCCCCccc---c-cccchHHHHHHHHHhcCCCCeEEEECCCCC------------cCcEE
Confidence 3489999999999988888877665321 1 344788888999998766666779998753 22256
Q ss_pred eccCcChHHHHHHHHH
Q 044944 606 FVGGADDREALAYSRL 621 (759)
Q Consensus 606 f~GG~ddreAL~~a~r 621 (759)
++-|.|..|..+-+..
T Consensus 154 ~v~g~~~~evv~kv~~ 169 (170)
T PF10120_consen 154 YVFGRDPVEVVEKVLK 169 (170)
T ss_dssp EEEESSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHh
Confidence 6668998888776543
No 240
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=20.58 E-value=4.4e+02 Score=27.35 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=29.0
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCC--CeEEEEEEee
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHP--NISLTVVWFV 636 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~--~v~ltv~r~~ 636 (759)
.+|++.+-||+|+--.|.++.++.+.. +.++..+++-
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 389999999999988888888876543 4677777764
No 241
>PRK11281 hypothetical protein; Provisional
Probab=20.54 E-value=1.9e+03 Score=28.25 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=14.4
Q ss_pred HhHHhhhhhhhhHHHHHHH-hccccccc
Q 044944 291 VNKLDFFTSGFLIPVFCAM-SGIRWEMY 317 (759)
Q Consensus 291 ~~kl~~~~~~~~~PlFF~~-~G~~~dl~ 317 (759)
.+.+..+ ..+++|+.|+. .+-..|..
T Consensus 620 ~~~~~~~-~~~~~pl~~~~~~~~~~~~~ 646 (1113)
T PRK11281 620 RRQIVRL-SLALLPLLFWSVVAELSPLG 646 (1113)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhCchh
Confidence 3344444 57788988873 34334433
No 242
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=20.50 E-value=1.5e+02 Score=33.26 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.8
Q ss_pred HhHHhhhhhhhhHHHHHHHhccccccccc
Q 044944 291 VNKLDFFTSGFLIPVFCAMSGIRWEMYLL 319 (759)
Q Consensus 291 ~~kl~~~~~~~~~PlFF~~~G~~~dl~~l 319 (759)
...++..+++-+|.+||..+|+.+.-+.+
T Consensus 60 ~~sl~~wINDgLMaiFFf~VGLEIKrE~l 88 (423)
T PRK14855 60 DLSLEHWVNDGLMAVFFLLVGLEIKRELL 88 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888999999999999975444
No 243
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.26 E-value=2.6e+02 Score=29.67 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=53.5
Q ss_pred CceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCC
Q 044944 510 GNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKI 587 (759)
Q Consensus 510 ~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~ 587 (759)
+.-.|=.|.... ..+.+.+++.|++.++..||--....-..-| ...+....+...+++++||++=-|.|..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 345666777777 6889999999999999999976443322111 1357788899999999999999898863
No 244
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.06 E-value=3.6e+02 Score=21.76 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHH
Q 044944 212 FPSLFGFYCTMFFLLRPLTIWIVSKTAEGESMKQSHFI 249 (759)
Q Consensus 212 ~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~ 249 (759)
++++++-+++++|+.|..+..-++.+| |+.|-.+.
T Consensus 4 ilali~G~~~Gff~ar~~~~k~l~~NP---pine~mir 38 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEKQLKENP---PINEKMIR 38 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHH
Confidence 334444445666777766666566555 45555443
Done!