Query 044944
Match_columns 759
No_of_seqs 304 out of 2045
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 4.5E-24 1.5E-28 229.8 11.8 300 73-408 58-382 (388)
2 3mt0_A Uncharacterized protein 99.6 2.6E-14 9E-19 150.9 21.4 261 432-746 8-278 (290)
3 3olq_A Universal stress protei 99.5 1.3E-13 4.5E-18 147.3 20.1 280 432-746 8-307 (319)
4 3loq_A Universal stress protei 99.5 4.8E-14 1.6E-18 149.1 15.2 266 432-746 23-292 (294)
5 3cis_A Uncharacterized protein 99.5 4E-13 1.4E-17 143.1 19.1 278 431-745 19-307 (309)
6 3ab8_A Putative uncharacterize 99.5 6.1E-13 2.1E-17 138.5 17.2 254 433-742 2-267 (268)
7 3fdx_A Putative filament prote 98.5 2.9E-07 1E-11 85.4 10.2 137 433-581 3-142 (143)
8 3s3t_A Nucleotide-binding prot 98.5 3.6E-07 1.2E-11 85.1 8.5 132 599-743 5-146 (146)
9 3s3t_A Nucleotide-binding prot 98.5 2.9E-07 1E-11 85.7 7.9 137 432-581 6-145 (146)
10 3hgm_A Universal stress protei 98.4 3.8E-07 1.3E-11 85.0 8.5 135 433-580 4-146 (147)
11 3hgm_A Universal stress protei 98.4 5.8E-07 2E-11 83.7 9.4 130 600-742 3-147 (147)
12 1mjh_A Protein (ATP-binding do 98.4 1.6E-06 5.4E-11 82.3 12.4 137 432-581 6-157 (162)
13 3dlo_A Universal stress protei 98.4 5.8E-07 2E-11 85.1 8.8 130 431-581 24-154 (155)
14 3fdx_A Putative filament prote 98.4 1.1E-06 3.9E-11 81.3 9.7 130 600-743 2-143 (143)
15 3tnj_A Universal stress protei 98.4 1E-06 3.4E-11 82.5 9.3 133 599-745 6-148 (150)
16 2dum_A Hypothetical protein PH 98.4 1.7E-06 6E-11 82.8 11.1 135 599-746 5-158 (170)
17 1tq8_A Hypothetical protein RV 98.4 1.2E-06 4.1E-11 83.7 9.6 137 431-581 17-156 (163)
18 2dum_A Hypothetical protein PH 98.3 2.2E-06 7.5E-11 82.1 11.4 136 433-581 7-154 (170)
19 2z08_A Universal stress protei 98.3 8.4E-07 2.9E-11 81.7 7.9 132 433-581 4-136 (137)
20 3dlo_A Universal stress protei 98.3 1.6E-06 5.5E-11 82.0 9.3 127 599-743 24-155 (155)
21 3idf_A USP-like protein; unive 98.3 8E-07 2.7E-11 81.9 7.0 133 433-581 3-137 (138)
22 2z08_A Universal stress protei 98.3 2E-06 6.9E-11 79.1 9.7 130 600-743 3-137 (137)
23 3tnj_A Universal stress protei 98.3 1.7E-06 5.7E-11 80.9 9.0 136 432-581 7-145 (150)
24 1mjh_A Protein (ATP-binding do 98.3 4E-06 1.4E-10 79.5 11.8 134 599-745 5-160 (162)
25 3idf_A USP-like protein; unive 98.3 8.1E-06 2.8E-10 75.0 12.9 129 600-742 2-137 (138)
26 3fg9_A Protein of universal st 98.3 1.1E-06 3.7E-11 83.0 6.8 137 431-581 15-155 (156)
27 2gm3_A Unknown protein; AT3G01 98.2 6.5E-06 2.2E-10 79.2 12.2 140 432-582 6-162 (175)
28 1tq8_A Hypothetical protein RV 98.2 3.1E-06 1.1E-10 80.7 9.8 133 599-745 17-159 (163)
29 3fg9_A Protein of universal st 98.2 5.2E-06 1.8E-10 78.2 10.4 131 599-743 15-156 (156)
30 1jmv_A USPA, universal stress 98.2 9.1E-06 3.1E-10 75.0 11.0 130 600-745 3-139 (141)
31 1jmv_A USPA, universal stress 98.1 1.2E-05 4.2E-10 74.1 9.7 131 433-581 4-136 (141)
32 1q77_A Hypothetical protein AQ 98.0 1.4E-05 4.8E-10 73.4 8.0 127 432-580 5-136 (138)
33 1q77_A Hypothetical protein AQ 97.9 1.5E-05 5.2E-10 73.2 7.1 39 599-637 4-43 (138)
34 2gm3_A Unknown protein; AT3G01 97.9 7.7E-05 2.6E-09 71.6 12.0 135 599-746 5-165 (175)
35 3ab8_A Putative uncharacterize 97.8 5.1E-05 1.7E-09 78.2 8.6 131 601-745 2-150 (268)
36 3olq_A Universal stress protei 97.7 5.7E-05 2E-09 79.9 8.9 146 431-586 156-308 (319)
37 3cis_A Uncharacterized protein 97.6 0.0001 3.5E-09 77.7 8.7 135 598-745 18-162 (309)
38 3mt0_A Uncharacterized protein 97.6 0.00012 3.9E-09 76.5 8.8 120 599-744 7-128 (290)
39 3zux_A Transporter, ASBTNM; tr 97.6 0.051 1.7E-06 57.6 28.7 111 77-199 43-156 (332)
40 3loq_A Universal stress protei 97.6 0.00017 5.9E-09 75.3 9.3 119 431-581 170-288 (294)
41 3g40_A Na-K-CL cotransporter; 95.6 0.2 6.9E-06 51.0 14.7 222 431-706 20-256 (294)
42 3zux_A Transporter, ASBTNM; tr 78.3 33 0.0011 35.7 14.7 124 274-410 28-155 (332)
43 1efv_B Electron transfer flavo 67.1 7.7 0.00026 39.0 6.2 92 609-717 39-144 (255)
44 1efp_B ETF, protein (electron 63.1 12 0.00041 37.5 6.7 92 609-717 36-141 (252)
45 1iv0_A Hypothetical protein; r 62.4 13 0.00045 31.4 5.8 57 525-585 38-94 (98)
46 1o97_C Electron transferring f 57.5 11 0.00038 38.1 5.3 93 609-717 36-140 (264)
47 1zun_A Sulfate adenylyltransfe 57.0 12 0.00041 39.1 5.7 55 601-666 48-102 (325)
48 1ni5_A Putative cell cycle pro 56.3 32 0.0011 37.4 9.1 94 600-705 14-119 (433)
49 1sur_A PAPS reductase; assimil 55.9 55 0.0019 31.4 10.0 51 601-666 46-96 (215)
50 2wsi_A FAD synthetase; transfe 54.4 39 0.0013 34.8 9.0 92 601-706 55-169 (306)
51 2oq2_A Phosphoadenosine phosph 49.8 21 0.00072 35.8 5.9 54 601-666 43-96 (261)
52 3a2k_A TRNA(Ile)-lysidine synt 47.0 58 0.002 35.6 9.4 95 600-705 19-130 (464)
53 1wy5_A TILS, hypothetical UPF0 42.4 80 0.0027 32.4 9.2 58 600-666 25-83 (317)
54 1nu0_A Hypothetical protein YQ 39.7 34 0.0012 30.7 5.0 70 513-585 26-97 (138)
55 3fwk_A FMN adenylyltransferase 37.4 95 0.0032 31.9 8.5 91 601-705 60-171 (308)
56 3gr7_A NADPH dehydrogenase; fl 35.7 1.2E+02 0.0041 31.5 9.3 124 554-705 188-311 (340)
57 2l0e_A Sodium/hydrogen exchang 35.4 11 0.00038 25.0 0.7 27 141-167 4-30 (33)
58 1vhx_A Putative holliday junct 34.9 51 0.0017 30.0 5.4 60 523-585 40-99 (150)
59 1z41_A YQJM, probable NADH-dep 31.3 4E+02 0.014 27.3 12.5 124 554-705 188-311 (338)
60 2k4m_A TR8_protein, UPF0146 pr 31.2 70 0.0024 29.2 5.5 37 515-551 91-127 (153)
61 2k3c_A TMIX peptide; membrane 28.2 2.3 7.9E-05 28.3 -3.6 27 257-283 5-31 (33)
62 3o4f_A Spermidine synthase; am 24.2 80 0.0027 32.2 5.2 32 667-704 136-167 (294)
63 3k32_A Uncharacterized protein 22.7 4.8E+02 0.016 24.4 10.5 35 600-638 7-41 (203)
64 3kru_A NADH:flavin oxidoreduct 21.6 6.7E+02 0.023 25.8 14.0 125 554-707 187-313 (343)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.90 E-value=4.5e-24 Score=229.79 Aligned_cols=300 Identities=12% Similarity=0.116 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHH----Hhhhh--hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHH
Q 044944 73 HILRTFAEFGMILHIFVLGVQIDLGLI----KHIRR--RAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAAS 146 (759)
Q Consensus 73 ~~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~i 146 (759)
.....+.+-.+.+++|.+|+|+|.+.+ ++.+| .....++.++++|++++. .+.... ..+...
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~~~--------~~~~~g 125 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNYAD--------PITREG 125 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCCSS--------TTHHHH
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhcCC--------hhhhhh
Confidence 356778888999999999999999877 55544 368889999999998842 222111 234566
Q ss_pred HHHHhhccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 044944 147 VAANSMTSLVVVTSVLKELNM-LNSELGRLASSAAMVSDILSWITCMILNGVSDAYNSNPMKPLYMFPSLFGFYCTMFFL 225 (759)
Q Consensus 147 g~~ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 225 (759)
..+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++.. + .. ...+ +...+++++..
T Consensus 126 w~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~-~~---~~~~-l~~~~~~~~~~--- 194 (388)
T 1zcd_A 126 WAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---N-DL---SMAS-LGVAAVAIAVL--- 194 (388)
T ss_dssp TSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---C-CC---CHHH-HHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---C-Cc---cHHH-HHHHHHHHHHH---
Confidence 677778999999999999865 45566699999999999999999998863 1 11 1111 11111111111
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC----CchhHHHhHHhhhhhhh
Q 044944 226 LRPLTIWIVSKTAEGESMKQSHFISIICIVLGVGFVGTCFGQGSFLGCFVFGLCLPDGP----PLGTQLVNKLDFFTSGF 301 (759)
Q Consensus 226 ~r~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~G~~~~lGafvaGl~i~~~~----~~~~~l~~kl~~~~~~~ 301 (759)
++.+|.. +++...+..+ . +.+.+.++..|+|+.+|+|++|+++|..+ +..+++++++++++..+
T Consensus 195 ------~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ 262 (388)
T 1zcd_A 195 ------AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYL 262 (388)
T ss_dssp ------HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHhc----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHH
Confidence 1222211 2223334433 2 24457779999999999999999999853 45789999999999999
Q ss_pred hHHHH-HHHhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHhhhcchhh
Q 044944 302 LIPVF-CAMSGIRWEMYLLKESSTRKMELIMVMSYIGKFTGVILSSSFF----------GISFIKASCLAFIMCCRGIPE 370 (759)
Q Consensus 302 ~~PlF-F~~~G~~~dl~~l~~~~~~~~~~i~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG~v~ 370 (759)
++|+| |+..|.++|...+....-.....+++..+++|++|++..++.. |++++|...+|++++.+++++
T Consensus 263 ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftms 342 (388)
T 1zcd_A 263 ILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMS 342 (388)
T ss_dssp HHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHH
T ss_pred HHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHH
Confidence 99999 9999999997532211001122444555899999955555544 999999999999999999999
Q ss_pred HHHHhhhcccCc--CchhHHHHHHHHHHHHHHHHHHH-HHH
Q 044944 371 IAMYCMWKDKKT--ITSQIFALLIANMVIVTSIASAV-VGY 408 (759)
Q Consensus 371 l~~~~~~~~~~~--i~~~~~~~~v~~~lv~t~i~~pl-v~~ 408 (759)
+++++.+++.+. +.++.+..+++++++ |.+.+|+ +++
T Consensus 343 L~Ia~laf~~~~~~~~~~ak~~il~~s~~-s~i~g~~~L~~ 382 (388)
T 1zcd_A 343 IFIASLAFGSVDPELINWAKLGILVGSIS-SAVIGYSWLRV 382 (388)
T ss_dssp HHHHHHHSTTSSCSSHHHHHHHHHHHHHT-TTSTTTGGGTT
T ss_pred HHHHHHhccCCchhhHhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999998876 356778888888888 5555554 443
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.61 E-value=2.6e-14 Score=150.87 Aligned_cols=261 Identities=15% Similarity=0.100 Sum_probs=167.7
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCCc
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGN 511 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 511 (759)
-+||+|++..+.....++.+..+....+ ..++++|+++ + .+ . ++.++.+....+. ..
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~-~---------~~-----~----~~~l~~~~~~~~~--~~ 64 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEK-R---------RD-----H----SAALNDLAQELRE--EG 64 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECS-S---------SC-----C----HHHHHHHHHHHHH--TT
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeC-c---------HH-----H----HHHHHHHHHHHhh--CC
Confidence 4799999999999988888877765433 5899999987 1 11 1 2222222222122 34
Q ss_pred eEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCC
Q 044944 512 IVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIR 591 (759)
Q Consensus 512 v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~ 591 (759)
+.++...... .+..+.|++.|++.++|+||+|.|++...++ ..++++.+++++++||||.++ ..+...
T Consensus 65 ~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~------~~~gs~~~~vl~~~~~PVlvv-~~~~~~--- 132 (290)
T 3mt0_A 65 YSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKK------AILTPDDWKLLRFAPCPVLMT-KTARPW--- 132 (290)
T ss_dssp CCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTST------TSCCHHHHHHHHHCSSCEEEE-CCCSCS---
T ss_pred CeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhh------cccCHHHHHHHhcCCCCEEEe-cCCCCC---
Confidence 6666555533 6789999999999999999999987643322 256778899999999999774 322211
Q ss_pred cccCCCcceEEEEeeccCcC-------hHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCC---CCcchhhHHHHHHH
Q 044944 592 PTFDFQLSYHIVMLFVGGAD-------DREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIE---TTDDRDLDNHAFDE 661 (759)
Q Consensus 592 ~~~~~~~~~~i~~~f~GG~d-------dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~---~~~~~~~d~~~~~~ 661 (759)
...+|++++.|+++ ++.|+++|.++|+..+.+++++|+.++........+ .+..++..++.+++
T Consensus 133 ------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (290)
T 3mt0_A 133 ------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRT 206 (290)
T ss_dssp ------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHH
T ss_pred ------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHH
Confidence 24599999999998 799999999999999999999999865321000000 01112223345666
Q ss_pred hhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEE
Q 044944 662 FKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLV 741 (759)
Q Consensus 662 ~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLv 741 (759)
+..+++-..+.+.-...+...++.+..++ .++||+|+|+++... +. .--+|-+.+-+... ..|+|||
T Consensus 207 ~~~~~g~~~~~~~v~~g~~~~~I~~~a~~--~~~dLiVmG~~g~~~------~~----~~~~Gsv~~~vl~~-~~~pVLv 273 (290)
T 3mt0_A 207 FQAEYGFSDEQLHIEEGPADVLIPRTAQK--LDAVVTVIGTVARTG------LS----GALIGNTAEVVLDT-LESDVLV 273 (290)
T ss_dssp HHHHHTCCTTTEEEEESCHHHHHHHHHHH--HTCSEEEEECCSSCC------GG----GCCSCHHHHHHHTT-CSSEEEE
T ss_pred HHHHcCCCcceEEEeccCHHHHHHHHHHh--cCCCEEEECCCCCcC------Cc----ceecchHHHHHHhc-CCCCEEE
Confidence 66655222222222222223333333333 469999999986432 11 12378888888754 6779999
Q ss_pred Eeecc
Q 044944 742 VQQQP 746 (759)
Q Consensus 742 vqq~~ 746 (759)
|..+.
T Consensus 274 v~~~~ 278 (290)
T 3mt0_A 274 LKPDD 278 (290)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98664
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.55 E-value=1.3e-13 Score=147.30 Aligned_cols=280 Identities=13% Similarity=0.094 Sum_probs=169.6
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCc-ccccccccccc--cccccchhHHHHHHHHHHHhc
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSV-TAFLKPYHQHT--QSVVASSTHLINAFAQLERSY 508 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~-~~~~~~~~~~~--~~~~~~~~~i~~af~~~~~~~ 508 (759)
-+||+|++..++....++.+..+....+ ..++++|+++-.... ........... +....+.++.++.+....+
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 83 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL-- 83 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4799999999999888888776654433 689999998632111 00000000000 0011122333333322222
Q ss_pred CCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCC
Q 044944 509 HGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIK 588 (759)
Q Consensus 509 ~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~ 588 (759)
...++++...... .+..+.|++.|+++++||||+|.|++...++ ..++++..+|++++||+|.+ |.++...
T Consensus 84 ~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlv-v~~~~~~ 154 (319)
T 3olq_A 84 EAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGS------LIFTPLDWQLLRKCPAPVWM-VKDKEWP 154 (319)
T ss_dssp HTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCS------CBCCHHHHHHHHHCSSCEEE-EESSCCC
T ss_pred hcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhc------ccccccHHHHHhcCCCCEEE-ecCcccc
Confidence 2346776666533 6899999999999999999999987643322 24677889999999999977 4433211
Q ss_pred CCCcccCCCcceEEEEeeccCcCh-------HHHHHHHHHHhhCC--CeEEEEEEeeeCCCCCCCC--CCCCc------c
Q 044944 589 SIRPTFDFQLSYHIVMLFVGGADD-------REALAYSRLMVEHP--NISLTVVWFVSSDPDTSSG--IETTD------D 651 (759)
Q Consensus 589 ~~~~~~~~~~~~~i~~~f~GG~dd-------reAL~~a~rma~~~--~v~ltv~r~~~~~~~~~~~--~~~~~------~ 651 (759)
...||++++.|++++ +.|+++|.++++.. +.+++++|+.+........ ...+. .
T Consensus 155 ---------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 225 (319)
T 3olq_A 155 ---------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNAL 225 (319)
T ss_dssp ---------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHH
T ss_pred ---------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHH
Confidence 235999999999964 99999999999876 9999999998654211000 00010 1
Q ss_pred hhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhh
Q 044944 652 RDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLV 731 (759)
Q Consensus 652 ~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~la 731 (759)
++..++.++++..++....+.+.-...+...++.+..++ .++||+|||+++... +. .--+|-+.+-+.
T Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dLiV~G~~g~~~------~~----~~~~Gsv~~~vl 293 (319)
T 3olq_A 226 RGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEE--LNAGIVVLGILGRTG------LS----AAFLGNTAEQLI 293 (319)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHH--TTEEEEEEECCSCCS------TH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHH--hCCCEEEEeccCccC------Cc----cccccHHHHHHH
Confidence 112234566666555222333322222222222233232 478999999975421 11 123688888777
Q ss_pred cCCCCCceEEEeecc
Q 044944 732 NSSEEFSVLVVQQQP 746 (759)
Q Consensus 732 s~d~~~SvLvvqq~~ 746 (759)
.. ..|+||||..+.
T Consensus 294 ~~-~~~pVLvv~~~~ 307 (319)
T 3olq_A 294 DH-IKCDLLAIKPDG 307 (319)
T ss_dssp TT-CCSEEEEECCTT
T ss_pred hh-CCCCEEEECCCC
Confidence 53 677999998764
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.54 E-value=4.8e-14 Score=149.14 Aligned_cols=266 Identities=12% Similarity=0.133 Sum_probs=166.4
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCccccccccccc-ccccccchhHHHHHHHHHHHhcCC
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQH-TQSVVASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~~~ 510 (759)
-|||+|++..++....++.+..+.... ...++++|+++............... .+....+.++.++.+....+. .
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 98 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVG--VEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA--A 98 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTT--CCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence 489999999999888888877665443 47899999998654221100000000 001222344555555444332 3
Q ss_pred ceEEEE-EEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCC
Q 044944 511 NIVVQH-FTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKS 589 (759)
Q Consensus 511 ~v~v~~-~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~ 589 (759)
++.++. ... ...+..+.| .|+++++|+||+|.|++.... +..++++.++|++++||||.| |.++...
T Consensus 99 g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~------~~~~Gs~~~~vl~~~~~PVlv-v~~~~~~- 166 (294)
T 3loq_A 99 GIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFK------KILLGSVSEGVLHDSKVPVYI-FKHDMVV- 166 (294)
T ss_dssp TCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHH------HHHHCCHHHHHHHHCSSCEEE-ECCCTTT-
T ss_pred CCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCcccc------ceeeccHHHHHHhcCCCCEEE-ecCcccc-
Confidence 466655 222 125778888 999999999999988654322 224677899999999999976 4443210
Q ss_pred CCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCC
Q 044944 590 IRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTK 669 (759)
Q Consensus 590 ~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 669 (759)
.....+|++++.|+++++.|+++|.++++..+.+++++++.++.. .++.+ +++.+.+... +-
T Consensus 167 ------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---------~~~~l-~~~~~~l~~~--~~ 228 (294)
T 3loq_A 167 ------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---------KTADL-RVMEEVIGAE--GI 228 (294)
T ss_dssp ------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC---------CHHHH-HHHHHHHHHT--TC
T ss_pred ------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch---------HHHHH-HHHHHHHHHc--CC
Confidence 012459999999999999999999999999999999999986531 11122 2333333322 22
Q ss_pred CeEEEEEEeCChhhHHHHHHhhc--cCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEeecc
Q 044944 670 KITLRVEIVKDGIGTTRVIQTLT--ENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQQQP 746 (759)
Q Consensus 670 ~v~~~e~~v~~~~e~~~~i~~~~--~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~~ 746 (759)
++.+. +..| +..+.|.+.. .++||+|+|+++... +. .--+|-+.+-+.. +..++||||.+..
T Consensus 229 ~~~~~---~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~------~~----~~~~Gs~~~~vl~-~~~~pvLvv~~~~ 292 (294)
T 3loq_A 229 EVHVH---IESG-TPHKAILAKREEINATTIFMGSRGAGS------VM----TMILGSTSESVIR-RSPVPVFVCKRGD 292 (294)
T ss_dssp CEEEE---EECS-CHHHHHHHHHHHTTCSEEEEECCCCSC------HH----HHHHHCHHHHHHH-HCSSCEEEECSCT
T ss_pred cEEEE---EecC-CHHHHHHHHHHhcCcCEEEEeCCCCCC------cc----ceeeCcHHHHHHh-cCCCCEEEECCCC
Confidence 34432 2223 3333443332 379999999986431 11 1136777777765 3567999998764
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.51 E-value=4e-13 Score=143.14 Aligned_cols=278 Identities=14% Similarity=0.123 Sum_probs=167.1
Q ss_pred cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcc-ccc-ccccccccccccchhHHHHHHHHHHHhc
Q 044944 431 NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVT-AFL-KPYHQHTQSVVASSTHLINAFAQLERSY 508 (759)
Q Consensus 431 elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~-~~~-~~~~~~~~~~~~~~~~i~~af~~~~~~~ 508 (759)
--+||+|++..+.....++.+..+.... ...++++|+++ +.... +.. ...+. .+....+.++.++.+....+..
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 94 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVS-PEVATWLEVPLPPGV-LRWQQDHGRHLIDDALKVVEQA 94 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECC-CCCCCTTCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEec-CcccccccCCCCchh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999988888888776665433 35899999987 22110 000 00000 0011122334444333322221
Q ss_pred ---CCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCC
Q 044944 509 ---HGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRG 585 (759)
Q Consensus 509 ---~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg 585 (759)
...+.++..... .+..+.|++.|+ ++|+||+|.|++....+ ..++++.++|++++||+|.|+ .+.
T Consensus 95 ~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlvv-~~~ 162 (309)
T 3cis_A 95 SLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPG------RLLGSVSSGLLRHAHCPVVII-HDE 162 (309)
T ss_dssp CSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTT------CCSCHHHHHHHHHCSSCEEEE-CTT
T ss_pred cccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccc------cccCcHHHHHHHhCCCCEEEE-cCC
Confidence 114566655442 588999999996 89999999987643322 257788999999999999774 332
Q ss_pred CCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcc--hhhHHHHHHHhh
Q 044944 586 KIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDD--RDLDNHAFDEFK 663 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~ 663 (759)
... . ......+|++++.|++.++.|+++|.++|+..+.+++++|+.++.... .....+.+ ++..++.++++.
T Consensus 163 ~~~-~----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 236 (309)
T 3cis_A 163 DSV-M----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-EWPGIDWPATQSMAEQVLAERL 236 (309)
T ss_dssp CCC-S----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-TCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccc-C----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc-CCCcccHHHHHHHHHHHHHHHH
Confidence 210 0 011235899999999999999999999999999999999998653210 00011111 111223344333
Q ss_pred hhc----CCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCce
Q 044944 664 DSV----VTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSV 739 (759)
Q Consensus 664 ~~~----~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~Sv 739 (759)
.+. .+-++++ ++. .| +..+.|.+.++++||+|||+++... | +.--+|-+.+-+... ..+.|
T Consensus 237 ~~~~~~~~~~~~~~--~~~-~g-~~~~~I~~~a~~adliV~G~~~~~~---------~-~~~l~Gsv~~~vl~~-~~~pV 301 (309)
T 3cis_A 237 AGWQERYPNVAITR--VVV-RD-QPARQLVQRSEEAQLVVVGSRGRGG---------Y-AGMLVGSVGETVAQL-ARTPV 301 (309)
T ss_dssp TTHHHHCTTSCEEE--EEE-SS-CHHHHHHHHHTTCSEEEEESSCSSC---------C-TTCSSCHHHHHHHHH-CSSCE
T ss_pred HHHHhhCCCCcEEE--EEE-cC-CHHHHHHHhhCCCCEEEECCCCCCC---------c-cccccCcHHHHHHhc-CCCCE
Confidence 322 1223443 222 33 3444555555589999999986421 1 123368887777643 56799
Q ss_pred EEEeec
Q 044944 740 LVVQQQ 745 (759)
Q Consensus 740 Lvvqq~ 745 (759)
|||..+
T Consensus 302 lvv~~~ 307 (309)
T 3cis_A 302 IVARES 307 (309)
T ss_dssp EEECC-
T ss_pred EEeCCC
Confidence 999754
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.47 E-value=6.1e-13 Score=138.47 Aligned_cols=254 Identities=12% Similarity=0.097 Sum_probs=159.0
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCccccccc-ccc--c--------ccccccchhHHHHHH
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKP-YHQ--H--------TQSVVASSTHLINAF 501 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~-~~~--~--------~~~~~~~~~~i~~af 501 (759)
|||+|++..++....++.+..+.... ...++++|+++......+-... ... . .+....+.++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999988888877665433 3689999998754211000000 000 0 001112234445544
Q ss_pred HHHHHhcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCC-ccccccccCchhhHHHHHhhhhcCCcceEE
Q 044944 502 AQLERSYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQW-GVNCLVESSELPIRALNGNILDKAPCSVGV 580 (759)
Q Consensus 502 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~-~~~g~~~~~~~~~~~~n~~vl~~ApCsVgI 580 (759)
....+. ..+.++..... .+..+.|++. +.++|+|++|.|++. ...+ ..++++.++|++++||||.+
T Consensus 80 ~~~~~~--~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~------~~~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGF------GGLGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHH--TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTC------CSCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHh--CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccccc------cccchhHHHHHHhCCCCEEE
Confidence 443332 23556555443 4788999998 889999999998764 3322 24678899999999999966
Q ss_pred EeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHH
Q 044944 581 LVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFD 660 (759)
Q Consensus 581 lvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~ 660 (759)
|.++.. ...+|++++.|+++++.|+++|.++++..+.+++++|+.++. +..++.-+++.+
T Consensus 147 -v~~~~~----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~---------~~~~~~l~~~~~ 206 (268)
T 3ab8_A 147 -APGEPV----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP---------ARAEAWALEAEA 206 (268)
T ss_dssp -ECSSCC----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH---------HHHHHHHHHHHH
T ss_pred -ECCCCC----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH---------HHHHHHHHHHHH
Confidence 443321 134999999999999999999999999999999999997541 011111112333
Q ss_pred HhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceE
Q 044944 661 EFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVL 740 (759)
Q Consensus 661 ~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvL 740 (759)
.+.. .+-++.+ .+. +| +..+.|.+..+++||+++|+ + + +..-+|-+.+-+... ..++||
T Consensus 207 ~l~~--~~~~~~~--~~~-~g-~~~~~i~~~a~~~dliV~G~--~--------~----~~~~~Gs~~~~vl~~-~~~pvl 265 (268)
T 3ab8_A 207 YLRD--HGVEASA--LVL-GG-DAADHLLRLQGPGDLLALGA--P--------V----RRLVFGSTAERVIRN-AQGPVL 265 (268)
T ss_dssp HHHH--TTCCEEE--EEE-CS-CHHHHHHHHCCTTEEEEEEC--C--------C----SCCSSCCHHHHHHHH-CSSCEE
T ss_pred HHHH--cCCceEE--EEe-CC-ChHHHHHHHHHhCCEEEECC--c--------c----cccEeccHHHHHHhc-CCCCEE
Confidence 3322 1223443 222 34 34455555556569999999 1 1 123367777766653 556888
Q ss_pred EE
Q 044944 741 VV 742 (759)
Q Consensus 741 vv 742 (759)
||
T Consensus 266 vv 267 (268)
T 3ab8_A 266 TA 267 (268)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.53 E-value=2.9e-07 Score=85.35 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=86.6
Q ss_pred eeeeeecCCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcC-
Q 044944 433 RILVCINKEEN--MNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYH- 509 (759)
Q Consensus 433 riL~cv~~~~~--~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~- 509 (759)
|||+|++..++ ....++.+..+.... ...++++|+++......+.........+......++..+.++.+.+...
T Consensus 3 ~ILv~vD~s~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (143)
T 3fdx_A 3 AILVPIDISDKEFTERIISHVESEARID--DAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSI 80 (143)
T ss_dssp EEEEECCTTCSSCCTTHHHHHHHHHHHH--TCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCC
T ss_pred EEEEEecCChHhhHHHHHHHHHHHHHhc--CCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 79999999988 777777776554322 3689999999865321111000000000112234555666666654432
Q ss_pred CceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 510 GNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 510 ~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
..+.++...... +..+.|++.|++.++|+|+||.|+ .... +..++++.++|++++||||.|+
T Consensus 81 ~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~------~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 81 PEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDIT------TYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp CGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCC------SCSSCHHHHHHHHHCSSEEEEE
T ss_pred CCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCe------eeeeccHHHHHHHhCCCCEEEe
Confidence 234455555444 889999999999999999999884 3222 2257888999999999999763
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.45 E-value=3.6e-07 Score=85.07 Aligned_cols=132 Identities=12% Similarity=0.152 Sum_probs=81.9
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCC---C---CCcchhhHHHHHHHhhhhcCCC---
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGI---E---TTDDRDLDNHAFDEFKDSVVTK--- 669 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~---~---~~~~~~~d~~~~~~~~~~~~~~--- 669 (759)
.++|++++.|+++++.|+++|.++|+..+.+++++|+++......... . .+..++..++.++++..+....
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 84 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAP 84 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 469999999999999999999999999999999999997642110000 0 0111223345566666554222
Q ss_pred CeEEEEEEeCChhhHHH-HHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 670 KITLRVEIVKDGIGTTR-VIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 670 ~v~~~e~~v~~~~e~~~-~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
++.+.....+...++.+ ..++ .++||+|+|+++... | +.--+|.+.+-+... ..|+||||.
T Consensus 85 ~~~~~~~~g~~~~~I~~~~a~~--~~~dliV~G~~~~~~---------~-~~~~~Gs~~~~vl~~-~~~pVlvV~ 146 (146)
T 3s3t_A 85 NLKTEISYGIPKHTIEDYAKQH--PEIDLIVLGATGTNS---------P-HRVAVGSTTSYVVDH-APCNVIVIR 146 (146)
T ss_dssp CCEEEEEEECHHHHHHHHHHHS--TTCCEEEEESCCSSC---------T-TTCSSCHHHHHHHHH-CSSEEEEEC
T ss_pred ceEEEEecCChHHHHHHHHHhh--cCCCEEEECCCCCCC---------c-ceEEEcchHHHHhcc-CCCCEEEeC
Confidence 34443333222222222 2222 579999999986421 1 122378887777753 557899884
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.45 E-value=2.9e-07 Score=85.68 Aligned_cols=137 Identities=11% Similarity=0.115 Sum_probs=89.6
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccc-cccccccccccchhHHHHHHHHHHHhcCC
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLK-PYHQHTQSVVASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~-~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 510 (759)
-|||+|++..++....++.+..+.... ...++++|+++.......... ..+...+....+.++.++.+....+. .
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 81 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH--QANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVAT--T 81 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 479999999988888888876665432 368999999987543211100 00000001122334445544443322 2
Q ss_pred ce-EEEEEEEEccCCChHHHHHH-HHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 511 NI-VVQHFTTIAPYASMHDDVCT-LALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 511 ~v-~v~~~t~vs~~~~m~~dI~~-~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
.+ .++...... +..+.|++ .|++.++|+|++|.|++....+ ..++++.++|++++||||.|+
T Consensus 82 g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 82 SAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHR------VAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp SCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTT------CSSCHHHHHHHHHCSSEEEEE
T ss_pred CCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcce------EEEcchHHHHhccCCCCEEEe
Confidence 35 555555544 78999999 9999999999999987654332 257788999999999999763
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.45 E-value=3.8e-07 Score=84.96 Aligned_cols=135 Identities=12% Similarity=0.149 Sum_probs=87.9
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCccccc--ccccc-c--ccccccchhHHHHHHHHHHHh
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFL--KPYHQ-H--TQSVVASSTHLINAFAQLERS 507 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~--~~~~~-~--~~~~~~~~~~i~~af~~~~~~ 507 (759)
|||+|++..++....++.+..+.... ...++++|+++......... ..... . .+....+.++.++.+....+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999988888888776665433 36899999998643110100 00000 0 011223345555555554433
Q ss_pred cCCceEE---EEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEE
Q 044944 508 YHGNIVV---QHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGV 580 (759)
Q Consensus 508 ~~~~v~v---~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgI 580 (759)
. ++.+ +..... .+..+.|++.|++.++|+|++|.|++....+ ..++++.++|++++||||.|
T Consensus 82 ~--g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 82 L--GVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKS------LLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp T--TCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSC------CCCCHHHHHHHHHCSSCEEE
T ss_pred c--CCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccccc------eeeccHHHHHHhhCCCCEEE
Confidence 2 3444 444443 4789999999999999999999987654322 25778899999999999965
No 11
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.43 E-value=5.8e-07 Score=83.69 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=80.1
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCC----C----CCC--CCCCCcchhhHHHHHHHhhhhc--C
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDP----D----TSS--GIETTDDRDLDNHAFDEFKDSV--V 667 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~----~----~~~--~~~~~~~~~~d~~~~~~~~~~~--~ 667 (759)
+||++++.|+++++.|+++|.++|++.+.+++++|+.+... . ... ....+..++..++.++++.... .
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 49999999999999999999999999999999999986431 0 000 0011222233445666665544 1
Q ss_pred CCCe---EEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEE
Q 044944 668 TKKI---TLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVV 742 (759)
Q Consensus 668 ~~~v---~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 742 (759)
+-++ .+.-...+...++.+..++ .++||+|+|+++... | +..-+|.+.+-+... ..|+||||
T Consensus 83 g~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~~---------~-~~~~~Gs~~~~vl~~-~~~pVlvV 147 (147)
T 3hgm_A 83 GVPADKVRAFVKGGRPSRTIVRFARK--RECDLVVIGAQGTNG---------D-KSLLLGSVAQRVAGS-AHCPVLVV 147 (147)
T ss_dssp TCCGGGEEEEEEESCHHHHHHHHHHH--TTCSEEEECSSCTTC---------C-SCCCCCHHHHHHHHH-CSSCEEEC
T ss_pred CCCccceEEEEecCCHHHHHHHHHHH--hCCCEEEEeCCCCcc---------c-cceeeccHHHHHHhh-CCCCEEEC
Confidence 2123 4433332222333333332 489999999986421 1 123468777777653 45688875
No 12
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.42 E-value=1.6e-06 Score=82.31 Aligned_cols=137 Identities=14% Similarity=0.206 Sum_probs=88.2
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecC----Cccccc-----c-ccc-----ccccccccchhH
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKG----SVTAFL-----K-PYH-----QHTQSVVASSTH 496 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~----r~~~~~-----~-~~~-----~~~~~~~~~~~~ 496 (759)
-|||+|++..++....++.+..+.... ...++++|+++... ...+.- . +.+ ...+....+.++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLK--AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSS--CCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 379999999999888888888776543 47899999987530 000110 0 110 000011122333
Q ss_pred HHHHHHHHHHhcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCc
Q 044944 497 LINAFAQLERSYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPC 576 (759)
Q Consensus 497 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApC 576 (759)
.++.+....+. ..+.++..... .+..+.|++.|++.++|+|++|.|++....+ ..++++.++|++++||
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~------~~~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKE------ILLGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCTT------CSSCHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH--cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCccc------eEecchHHHHHHhCCC
Confidence 44443332222 34666655443 4789999999999999999999987654322 2578889999999999
Q ss_pred ceEEE
Q 044944 577 SVGVL 581 (759)
Q Consensus 577 sVgIl 581 (759)
||.|+
T Consensus 153 pVlvv 157 (162)
T 1mjh_A 153 PVLVV 157 (162)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99774
No 13
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.41 E-value=5.8e-07 Score=85.11 Aligned_cols=130 Identities=13% Similarity=0.172 Sum_probs=88.0
Q ss_pred cceeeeeecC-CCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcC
Q 044944 431 NLRILVCINK-EENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYH 509 (759)
Q Consensus 431 elriL~cv~~-~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 509 (759)
--+||+|++. .+.....++.+..+.... ...++++|+++..... .+ ....+.++.++.+....+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~------~~----~~~~~~~~~l~~~~~~~~~-- 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRT------KD----EDIIEAKETLSWAVSIIRK-- 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTS------CH----HHHHHHHHHHHHHHHHHHH--
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCcc------cH----HHHHHHHHHHHHHHHHHHh--
Confidence 4589999999 888888888877665433 3578999998854321 00 1122234455544444333
Q ss_pred CceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 510 GNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 510 ~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
..+.++..+.+ ...+..+.|++.|++.++|+||+|.|++....+ ..++++.++|+++|||||.|+
T Consensus 90 ~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGK------LIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSC------EECCHHHHHHHHHCSSCEEEE
T ss_pred cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCC------EEeccHHHHHHHhCCCCEEEe
Confidence 23444443333 225889999999999999999999887643322 257788999999999999764
No 14
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.37 E-value=1.1e-06 Score=81.28 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=77.2
Q ss_pred eEEEEeeccCcC--hHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCC----C-CCCCCcchhhHHHH---HHHhhhhcC--
Q 044944 600 YHIVMLFVGGAD--DREALAYSRLMVEHPNISLTVVWFVSSDPDTS----S-GIETTDDRDLDNHA---FDEFKDSVV-- 667 (759)
Q Consensus 600 ~~i~~~f~GG~d--dreAL~~a~rma~~~~v~ltv~r~~~~~~~~~----~-~~~~~~~~~~d~~~---~~~~~~~~~-- 667 (759)
++|++++.|+++ ++.|+++|.++|+..+.+++++|+.++..... . ..+.+..++..++. ++++..+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999 99999999999999999999999987532100 0 00011112222233 333333331
Q ss_pred CCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 668 TKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 668 ~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
..++.+.....+...++.+..++ .++||+|+|+++ .. | +..-+|.+.+-+... ..|+||||.
T Consensus 82 ~~~v~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~~-~~---------~-~~~~~Gs~~~~v~~~-~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFHVAEGSPKDKILALAKS--LPADLVIIASHR-PD---------I-TTYLLGSNAAAVVRH-AECSVLVVR 143 (143)
T ss_dssp GGGEEEEEEESCHHHHHHHHHHH--TTCSEEEEESSC-TT---------C-CSCSSCHHHHHHHHH-CSSEEEEEC
T ss_pred CCceEEEEEecChHHHHHHHHHH--hCCCEEEEeCCC-CC---------C-eeeeeccHHHHHHHh-CCCCEEEeC
Confidence 12345433333223333333332 379999999984 21 1 223478888877753 567899873
No 15
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.37 E-value=1e-06 Score=82.46 Aligned_cols=133 Identities=15% Similarity=0.189 Sum_probs=78.4
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCC-----C-C-CCCCCc---chhhHHHHHHHhhhhcCC
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDT-----S-S-GIETTD---DRDLDNHAFDEFKDSVVT 668 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~-----~-~-~~~~~~---~~~~d~~~~~~~~~~~~~ 668 (759)
.++|++++.|+++++.|+++|.++|+..+.+|+++|+.++.... . . ...++. .++..++.++++..+.+.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35999999999999999999999999999999999998653210 0 0 001111 122334566666655422
Q ss_pred CCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEeec
Q 044944 669 KKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQQQ 745 (759)
Q Consensus 669 ~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~ 745 (759)
..+.+.-...+..+++.+..++ .++||+|+|+++... | + .-+|.+.+-+... ..|+||||...
T Consensus 86 ~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~~---------~-~-~~~Gs~~~~vl~~-~~~pVlvv~~~ 148 (150)
T 3tnj_A 86 DPAHRWLVWGEPREEIIRIAEQ--ENVDLIVVGSHGRHG---------L-A-LLLGSTANSVLHY-AKCDVLAVRLR 148 (150)
T ss_dssp CGGGEEEEESCHHHHHHHHHHH--TTCSEEEEEEC-------------------CCCHHHHHHHH-CSSEEEEEECC
T ss_pred CcceEEEecCCHHHHHHHHHHH--cCCCEEEEecCCCCC---------c-C-eEecchHHHHHHh-CCCCEEEEeCC
Confidence 2222222222222233333332 389999999986421 2 2 3478877777753 56799999754
No 16
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.36 E-value=1.7e-06 Score=82.77 Aligned_cols=135 Identities=9% Similarity=-0.011 Sum_probs=83.4
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCC--C-CC---------CCCCc---chhhHHHHHHHhh
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDT--S-SG---------IETTD---DRDLDNHAFDEFK 663 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~--~-~~---------~~~~~---~~~~d~~~~~~~~ 663 (759)
.++|++++.|+++++.|+++|.++|+..+.+|+++|++++.... . .. +.++. .++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999998653210 0 00 00111 1223345566665
Q ss_pred hhc--CCCCeEE--EEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCce
Q 044944 664 DSV--VTKKITL--RVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSV 739 (759)
Q Consensus 664 ~~~--~~~~v~~--~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~Sv 739 (759)
.+. .+-++.+ .....+...++.+..++ .++||+|+|+++... | +.--+|.+.+-+... ..|+|
T Consensus 85 ~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~--~~~DlIV~G~~g~~~---------~-~~~~~Gsv~~~vl~~-~~~PV 151 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRFGIPWDEIVKVAEE--ENVSLIILPSRGKLS---------L-SHEFLGSTVMRVLRK-TKKPV 151 (170)
T ss_dssp HHHHHHTTCSEEEEEEEEECHHHHHHHHHHH--TTCSEEEEESCCCCC------------TTCCCHHHHHHHHH-CSSCE
T ss_pred HHHHHcCCceeeeeEEecCChHHHHHHHHHH--cCCCEEEECCCCCCc---------c-ccceechHHHHHHHh-CCCCE
Confidence 543 1223443 22222222233333332 479999999986421 1 223478888877754 56799
Q ss_pred EEEeecc
Q 044944 740 LVVQQQP 746 (759)
Q Consensus 740 Lvvqq~~ 746 (759)
|||....
T Consensus 152 lvv~~~~ 158 (170)
T 2dum_A 152 LIIKEVD 158 (170)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998664
No 17
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.35 E-value=1.2e-06 Score=83.68 Aligned_cols=137 Identities=9% Similarity=0.059 Sum_probs=85.9
Q ss_pred cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEE--EeeeecCCcccccccccccccccccchhHHHHHHHHHHHhc
Q 044944 431 NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVL--QLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSY 508 (759)
Q Consensus 431 elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~l--hLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 508 (759)
--|||+|++..+.....++.+..+.. . ...++++ |+++......+.-...+...+......++.++.+....+.
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 92 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN- 92 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT-
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45899999999888888888877665 3 3688899 8876542101110000000001223345555555444332
Q ss_pred CCceE-EEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 509 HGNIV-VQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 509 ~~~v~-v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
..+. ++..... .+..+.|++.|++.++|+|+||.|++....+ ..++++.++|+++|||||.|+
T Consensus 93 -~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 93 -AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp -TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEEE
T ss_pred -cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccc------eeeccHHHHHHHhCCCCEEEE
Confidence 2355 5555443 4789999999999999999999987643222 256788999999999999774
No 18
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.35 E-value=2.2e-06 Score=82.09 Aligned_cols=136 Identities=11% Similarity=0.123 Sum_probs=86.2
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccc--cc--------cccccccccccchhHHHHHHH
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAF--LK--------PYHQHTQSVVASSTHLINAFA 502 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~--~~--------~~~~~~~~~~~~~~~i~~af~ 502 (759)
|||+|++..++....++.+..+.... ...++++|+++........ +. ..+...+....+.++.++.+.
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 7 KVLFPTDFSEGAYRAVEVFEKRNKME--VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHCCSC--CSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999888888888777544 3789999998743211000 00 000000011122334444433
Q ss_pred HHHHhcCCceEEEE--EEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEE
Q 044944 503 QLERSYHGNIVVQH--FTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGV 580 (759)
Q Consensus 503 ~~~~~~~~~v~v~~--~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgI 580 (759)
...+.. .+.++. .... .+..+.|++.|++.++|+||+|.|++....+ ..++++.++|++++||||.|
T Consensus 85 ~~~~~~--g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~PVlv 153 (170)
T 2dum_A 85 EEVKRA--FRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLSH------EFLGSTVMRVLRKTKKPVLI 153 (170)
T ss_dssp HHHHHH--TTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC--T------TCCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHc--CCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcccc------ceechHHHHHHHhCCCCEEE
Confidence 332221 244443 3333 4789999999999999999999987653322 25778899999999999977
Q ss_pred E
Q 044944 581 L 581 (759)
Q Consensus 581 l 581 (759)
+
T Consensus 154 v 154 (170)
T 2dum_A 154 I 154 (170)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.34 E-value=8.4e-07 Score=81.75 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=80.8
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCCce
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGNI 512 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v 512 (759)
|||+|++..+.....++.+..+.... ...++++|+++.......-..+.+. .....++..+.++.+.+.. .+
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~--g~ 75 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPDYLGEPFFEEA----LRRRLERAEGVLEEARALT--GV 75 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHH--CC
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCCCccccccchHHH----HHHHHHHHHHHHHHHHHHc--CC
Confidence 79999999988888887776665432 3689999998732110000000000 0011122223333333321 23
Q ss_pred -EEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 513 -VVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 513 -~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
.++..... .+..+.|++.|++.++|+|++|.|++....+ ..++++.++|++++||||.|+
T Consensus 76 ~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 76 PKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGS------LFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCSC------SSSCHHHHHHHHHCSSCEEEE
T ss_pred CccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhhh------hhhccHHHHHHhcCCCCEEEe
Confidence 33333332 4789999999999999999999987653322 257788999999999999763
No 20
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.31 E-value=1.6e-06 Score=82.02 Aligned_cols=127 Identities=9% Similarity=0.040 Sum_probs=81.4
Q ss_pred ceEEEEeecc-CcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc--CCCCeEEEE
Q 044944 599 SYHIVMLFVG-GADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV--VTKKITLRV 675 (759)
Q Consensus 599 ~~~i~~~f~G-G~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~v~~~e 675 (759)
.++|++++.| ++.++.|+++|.++|+..+.+|+++|+.++.. . ..+..++..++.++++.... .+..+...
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~---~--~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~- 97 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGG---R--TKDEDIIEAKETLSWAVSIIRKEGAEGEEH- 97 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCST---T--SCHHHHHHHHHHHHHHHHHHHHTTCCEEEE-
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCC---c--ccHHHHHHHHHHHHHHHHHHHhcCCCceEE-
Confidence 4589999999 99999999999999999999999999997531 1 11222333445566655544 22234432
Q ss_pred EEeCChhhHHHHHHhhc--cCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 676 EIVKDGIGTTRVIQTLT--ENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 676 ~~v~~~~e~~~~i~~~~--~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
..+..|. ..+.|.+.+ .++||+|+|+++... | +.--+|.+.+-+... ..|.||||+
T Consensus 98 ~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~---------~-~~~~lGSv~~~vl~~-a~~PVLvVr 155 (155)
T 3dlo_A 98 LLVRGKE-PPDDIVDFADEVDAIAIVIGIRKRSP---------T-GKLIFGSVARDVILK-ANKPVICIK 155 (155)
T ss_dssp EEESSSC-HHHHHHHHHHHTTCSEEEEECCEECT---------T-SCEECCHHHHHHHHH-CSSCEEEEC
T ss_pred EEecCCC-HHHHHHHHHHHcCCCEEEECCCCCCC---------C-CCEEeccHHHHHHHh-CCCCEEEeC
Confidence 2233332 223333332 379999999986421 1 122378888877753 567899984
No 21
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.31 E-value=8e-07 Score=81.87 Aligned_cols=133 Identities=11% Similarity=0.028 Sum_probs=87.0
Q ss_pred eeeeeecCCCChHHHHHHHHhhC-CCCCCCceEEEEEeeeecCCcccccccccccccccc-cchhHHHHHHHHHHHhcCC
Q 044944 433 RILVCINKEENMNPIISLLEASN-PTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVV-ASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~-~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~~~ 510 (759)
|||+|++..++....++.+..+. ... ...++++|+++................+... .+.++.++.+....+. .
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 78 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDA--DCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE--K 78 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCC--CCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH--C
Confidence 79999999999888888887776 443 4789999998865332110000000000111 3344555555444332 3
Q ss_pred ceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 511 NIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 511 ~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
++.++...... +..+.|++.|+ ++|+|++|.|++....+. . +++.++|++++||||.|+
T Consensus 79 g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~------~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 79 GINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKI------F-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp TCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSC------C-CCTTCHHHHHCSSCEEEE
T ss_pred CCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHH------h-CcHHHHHHhcCCCCEEEe
Confidence 45666555544 78999999998 999999999876544332 2 556779999999999763
No 22
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.30 E-value=2e-06 Score=79.13 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=79.2
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCC---CC-CCCcchhhHHHHHHHhhhhcCCC-CeEEE
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSS---GI-ETTDDRDLDNHAFDEFKDSVVTK-KITLR 674 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~---~~-~~~~~~~~d~~~~~~~~~~~~~~-~v~~~ 674 (759)
++|++++.|+++++.|+++|.++|+..+.+++++|+.++...... .+ ..+..++..++.++++..+. +- ++.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~ 81 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT-GVPKEDAL 81 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH-CCCGGGEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc-CCCccEEE
Confidence 489999999999999999999999999999999999864311000 00 01111223345566655432 21 34443
Q ss_pred EEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 675 VEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 675 e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
....+...++.+..++ .++||+|+|+++... | +..-+|.+.+-+... ..|+||||.
T Consensus 82 ~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~~---------~-~~~~~Gs~~~~vl~~-~~~pVlvv~ 137 (137)
T 2z08_A 82 LLEGVPAEAILQAARA--EKADLIVMGTRGLGA---------L-GSLFLGSQSQRVVAE-APCPVLLVR 137 (137)
T ss_dssp EEESSHHHHHHHHHHH--TTCSEEEEESSCTTC---------C-SCSSSCHHHHHHHHH-CSSCEEEEC
T ss_pred EEecCHHHHHHHHHHH--cCCCEEEECCCCCch---------h-hhhhhccHHHHHHhc-CCCCEEEeC
Confidence 2222222233333332 479999999986421 1 123478888877754 567999873
No 23
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.29 E-value=1.7e-06 Score=80.95 Aligned_cols=136 Identities=11% Similarity=0.147 Sum_probs=80.0
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccc-c-ccccccchhHHHHHHHHHHHhcC
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQ-H-TQSVVASSTHLINAFAQLERSYH 509 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~-~-~~~~~~~~~~i~~af~~~~~~~~ 509 (759)
-|||+|++..++....++.+..+.... ...++++|+++......+....... . .+......++..+.++.+.+...
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQI--GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 379999999999998888887665443 3689999998754221000000000 0 00111112333344444443322
Q ss_pred CceE-EEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 510 GNIV-VQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 510 ~~v~-v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
+. ++..... .+..+.|++.|++.++|+|++|.|++.... ..++++.++|++++||||.|+
T Consensus 85 --~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-------~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 85 --IDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLA-------LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp --CCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEE
T ss_pred --CCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-------eEecchHHHHHHhCCCCEEEE
Confidence 22 1222222 478899999999999999999988764322 256778999999999999774
No 24
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.29 E-value=4e-06 Score=79.50 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=81.9
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCC-----CC-CCC--C--C-CCC------c---chhhHHHH
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSD-----PD-TSS--G--I-ETT------D---DRDLDNHA 658 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~-----~~-~~~--~--~-~~~------~---~~~~d~~~ 658 (759)
.++|++++.|+++++.|+++|.++|+..+.+++++|++++. .. ... . . ..+ . .++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999998753 10 000 0 0 110 0 11223345
Q ss_pred HHHhhhhc--CCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCC
Q 044944 659 FDEFKDSV--VTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEE 736 (759)
Q Consensus 659 ~~~~~~~~--~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~ 736 (759)
++++..+. .+-++.+.-...+...++.+..++ .++||+|+|+++... | +.--+|-+.+-+... ..
T Consensus 85 l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~--~~~dlIV~G~~g~~~---------~-~~~~~GSv~~~vl~~-~~ 151 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDIIVVGIPHEEIVKIAED--EGVDIIIMGSHGKTN---------L-KEILLGSVTENVIKK-SN 151 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH--TTCSEEEEESCCSSC---------C-TTCSSCHHHHHHHHH-CC
T ss_pred HHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHH--cCCCEEEEcCCCCCC---------c-cceEecchHHHHHHh-CC
Confidence 66665543 122333322222222233333333 479999999986421 1 123478888888764 56
Q ss_pred CceEEEeec
Q 044944 737 FSVLVVQQQ 745 (759)
Q Consensus 737 ~SvLvvqq~ 745 (759)
|+||||...
T Consensus 152 ~pVlvv~~~ 160 (162)
T 1mjh_A 152 KPVLVVKRK 160 (162)
T ss_dssp SCEEEECCC
T ss_pred CCEEEEeCC
Confidence 799999753
No 25
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.27 E-value=8.1e-06 Score=75.01 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=77.8
Q ss_pred eEEEEeeccCcChHHHHHHHHHHh-hCCCeEEEEEEeeeCCCCCCC-----CCCCCcch-hhHHHHHHHhhhhcCCCCeE
Q 044944 600 YHIVMLFVGGADDREALAYSRLMV-EHPNISLTVVWFVSSDPDTSS-----GIETTDDR-DLDNHAFDEFKDSVVTKKIT 672 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma-~~~~v~ltv~r~~~~~~~~~~-----~~~~~~~~-~~d~~~~~~~~~~~~~~~v~ 672 (759)
++|++++.|+++++.|+++|.++| +..+.+++++|+.++...... .+..+..+ +..++.++++........+.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 489999999999999999999999 999999999999976321000 00000111 23345566665554222233
Q ss_pred EEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEE
Q 044944 673 LRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVV 742 (759)
Q Consensus 673 ~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 742 (759)
++.++ ..| +..+.|.+.++++||+|+|+++... |.+.- |.+.+-+... ..|+||||
T Consensus 82 ~~~~v-~~g-~~~~~I~~~a~~~dliV~G~~~~~~---------~~~~~--Gs~~~~vl~~-~~~pVlvv 137 (138)
T 3idf_A 82 PFVVI-KEG-EPVEMVLEEAKDYNLLIIGSSENSF---------LNKIF--ASHQDDFIQK-APIPVLIV 137 (138)
T ss_dssp CEEEE-EES-CHHHHHHHHHTTCSEEEEECCTTST---------TSSCC--CCTTCHHHHH-CSSCEEEE
T ss_pred eEEEE-ecC-ChHHHHHHHHhcCCEEEEeCCCcch---------HHHHh--CcHHHHHHhc-CCCCEEEe
Confidence 32222 223 2333444444499999999986421 22222 6666666643 45688887
No 26
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.26 E-value=1.1e-06 Score=83.00 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=87.5
Q ss_pred cceeeeeec--CCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhc
Q 044944 431 NLRILVCIN--KEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSY 508 (759)
Q Consensus 431 elriL~cv~--~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 508 (759)
--|||+|++ ..+.....++.+..+.... ...++++|+++.......-....+. .+......++.++.+....+.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~- 90 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDINIFDSLTPSK-IQAKRKHVEDVVAEYVQLAEQ- 90 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCCCSSHHHH-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCccccccCCHHH-HHHHHHHHHHHHHHHHHHHHH-
Confidence 347999999 8888888888776665432 3689999999865321100000000 001222334445544443332
Q ss_pred CCce-EEEEEEEEccCCChHHHHHHH-HhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 509 HGNI-VVQHFTTIAPYASMHDDVCTL-ALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 509 ~~~v-~v~~~t~vs~~~~m~~dI~~~-A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
..+ .++.....+ .+..+.|++. |++.++|+|++|.|++...+ . .++++.++|+++|||||.|+
T Consensus 91 -~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~------~-~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 91 -RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS------K-IAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp -HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS------S-SCSCHHHHHHHHCSSEEEEE
T ss_pred -cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc------e-eecchHHHHHHhCCCCEEEe
Confidence 234 355555552 4889999999 99999999999998765322 1 57788999999999999763
No 27
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.25 E-value=6.5e-06 Score=79.19 Aligned_cols=140 Identities=12% Similarity=0.141 Sum_probs=81.7
Q ss_pred ceeeeeecCCC---------ChHHHHHHHHhhCCCC-CCCceEEEEEeeeecCCcc----cccc-ccccc--ccccccch
Q 044944 432 LRILVCINKEE---------NMNPIISLLEASNPTR-NFPITAFVLQLIELKGSVT----AFLK-PYHQH--TQSVVASS 494 (759)
Q Consensus 432 lriL~cv~~~~---------~~~~li~Ll~~~~~~~-~sp~~v~~lhLvel~~r~~----~~~~-~~~~~--~~~~~~~~ 494 (759)
-|||+|++..+ .....++.+..+...+ .....++++|+++...... +... ..+.. .+....+.
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 47999999988 7777888876643222 1347899999986432110 0000 00000 00111122
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcC
Q 044944 495 THLINAFAQLERSYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKA 574 (759)
Q Consensus 495 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~A 574 (759)
++.++.+....+. ..+.++..... .+..+.|++.|++.++||||||.|++....+ ..++++.++|++++
T Consensus 86 ~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~------~~~Gsva~~vl~~a 154 (175)
T 2gm3_A 86 LHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQK------VFVGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhh------hhcCchHHHHHhCC
Confidence 3444444332222 23566554443 4789999999999999999999987643322 25778899999999
Q ss_pred CcceEEEe
Q 044944 575 PCSVGVLV 582 (759)
Q Consensus 575 pCsVgIlv 582 (759)
||+|.|+-
T Consensus 155 ~~pVlvv~ 162 (175)
T 2gm3_A 155 ECPVMTIK 162 (175)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEc
Confidence 99997753
No 28
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.24 E-value=3.1e-06 Score=80.73 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=78.3
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEE--EeeeCCCC--CCC---CCCCCcchhhHHHHHHHhhhhc-C-CC
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVV--WFVSSDPD--TSS---GIETTDDRDLDNHAFDEFKDSV-V-TK 669 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~--r~~~~~~~--~~~---~~~~~~~~~~d~~~~~~~~~~~-~-~~ 669 (759)
.++|++++.|++.++.|+++|.++|+ .+.+|+++ ++++.... ... .+..+..++..++.++++.... . +-
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv 95 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA 95 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45999999999999999999999999 99999999 88754311 000 0000112223345566665544 1 12
Q ss_pred C-eEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEeec
Q 044944 670 K-ITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQQQ 745 (759)
Q Consensus 670 ~-v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~ 745 (759)
. +.+.....+...++++..++ .++||+|+|+++... | +..-+|-+.+-+... ..|+||||...
T Consensus 96 ~~v~~~v~~G~~~~~I~~~a~~--~~~DLIV~G~~g~~~---------~-~~~~lGSva~~vl~~-a~~PVlvV~~~ 159 (163)
T 1tq8_A 96 KNVEERPIVGAPVDALVNLADE--EKADLLVVGNVGLST---------I-AGRLLGSVPANVSRR-AKVDVLIVHTT 159 (163)
T ss_dssp CEEEEEEECSSHHHHHHHHHHH--TTCSEEEEECCCCCS---------H-HHHHTBBHHHHHHHH-TTCEEEEECCC
T ss_pred CeEEEEEecCCHHHHHHHHHHh--cCCCEEEECCCCCCc---------c-cceeeccHHHHHHHh-CCCCEEEEeCC
Confidence 2 44432221112222222222 579999999986431 1 122368887777754 56799999754
No 29
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.21 E-value=5.2e-06 Score=78.19 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=80.9
Q ss_pred ceEEEEeec--cCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCC----CCcchhhHHHHHHHhhhhc-C-C-C
Q 044944 599 SYHIVMLFV--GGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIE----TTDDRDLDNHAFDEFKDSV-V-T-K 669 (759)
Q Consensus 599 ~~~i~~~f~--GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~-~-~-~ 669 (759)
.++|++++. |+++++.|+++|.++|+..+.+++++|++++......... .+..++..++.++++..+. . + .
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 94 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVN 94 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 469999999 9999999999999999999999999999976421100000 0111223345566665544 1 1 1
Q ss_pred CeEEEEEE-eCChhhHHHH-HHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEe
Q 044944 670 KITLRVEI-VKDGIGTTRV-IQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQ 743 (759)
Q Consensus 670 ~v~~~e~~-v~~~~e~~~~-i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq 743 (759)
++.+.-.. .+...++.+. .+ +.++||+|+|+++.. .+ +. -+|.+.+-+... ..|+||||.
T Consensus 95 ~~~~~v~~~g~~~~~I~~~~a~--~~~~DlIV~G~~g~~---------~~-~~-~~Gs~~~~vl~~-a~~PVlvV~ 156 (156)
T 3fg9_A 95 QVEPLVYEGGDVDDVILEQVIP--EFKPDLLVTGADTEF---------PH-SK-IAGAIGPRLARK-APISVIVVR 156 (156)
T ss_dssp SEEEEEEECSCHHHHHHHTHHH--HHCCSEEEEETTCCC---------TT-SS-SCSCHHHHHHHH-CSSEEEEEC
T ss_pred ceEEEEEeCCCHHHHHHHHHHH--hcCCCEEEECCCCCC---------cc-ce-eecchHHHHHHh-CCCCEEEeC
Confidence 34443332 2222222222 22 258999999998643 12 22 478888877754 567999984
No 30
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.17 E-value=9.1e-06 Score=74.98 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=78.2
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCC--CCCCC-----CCCCcchhhHHHHHHHhhhhcCCCCeE
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDP--DTSSG-----IETTDDRDLDNHAFDEFKDSVVTKKIT 672 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~--~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~v~ 672 (759)
++|++++.|+++++.|+++|.++|+..+.+++++|+.++.. ..... ...+..++..++.++++..+.+-+...
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISE 82 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCC
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 48999999999999999999999999999999999984311 00000 000111122334566665554211112
Q ss_pred EEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEeec
Q 044944 673 LRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQQQ 745 (759)
Q Consensus 673 ~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~ 745 (759)
......+...++.+..++ .++||+|+|++ ... | ..+|-+.+-+... ..|+||||...
T Consensus 83 ~~~~~g~~~~~I~~~a~~--~~~dliV~G~~-~~~---------~---~~lgs~~~~vl~~-~~~pVlvv~~~ 139 (141)
T 1jmv_A 83 KLSGSGDLGQVLSDAIEQ--YDVDLLVTGHH-QDF---------W---SKLMSSTRQVMNT-IKIDMLVVPLR 139 (141)
T ss_dssp EEEEEECHHHHHHHHHHH--TTCCEEEEEEC-CCC---------H---HHHHHHHHHHHTT-CCSEEEEEECC
T ss_pred EEEecCCHHHHHHHHHHh--cCCCEEEEeCC-Cch---------h---hhhcchHHHHHhc-CCCCEEEeeCC
Confidence 211222222333333333 47999999998 421 1 2267777777743 56799999754
No 31
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.08 E-value=1.2e-05 Score=74.08 Aligned_cols=131 Identities=10% Similarity=0.054 Sum_probs=80.5
Q ss_pred eeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeee-cCCcccccccccccccccccchhHHHHHHHHHHHhcCCc
Q 044944 433 RILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIEL-KGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHGN 511 (759)
Q Consensus 433 riL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel-~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 511 (759)
|||+|++..++....++.+..+.... ...++++|+.+- +... +-...... .+......++..+.++.+.+.. +
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~--~ 77 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKRH--DAKLSIIHVDVNFSDLY-TGLIDVNM-SSMQDRISTETQKALLDLAESV--D 77 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEECCGGGC-CCCEEHHH-HHHTTCCCCHHHHHHHHHHHHS--S
T ss_pred eEEEEecCchhhHHHHHHHHHHHHhc--CCEEEEEEEecCchhhh-ccccccch-HHHHHHHHHHHHHHHHHHHHHc--C
Confidence 79999999999888888776665432 368999999843 2111 10000000 0000011123333444444332 2
Q ss_pred eEE-EEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 512 IVV-QHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 512 v~v-~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
+.+ +..... .+..+.|++.|++.++|+|++|.| +.. +. .++++.++|+++|||||.|+
T Consensus 78 ~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~----~~----~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 78 YPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDF----WS----KLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp SCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCC----HH----HHHHHHHHHHTTCCSEEEEE
T ss_pred CCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cch----hh----hhcchHHHHHhcCCCCEEEe
Confidence 332 222222 478999999999999999999987 532 11 15788999999999999775
No 32
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.97 E-value=1.4e-05 Score=73.41 Aligned_cols=127 Identities=7% Similarity=-0.012 Sum_probs=77.6
Q ss_pred ceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEee-ee-cCCc-ccc-ccc-ccccccccccchhHHHHHHHHHHH
Q 044944 432 LRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLI-EL-KGSV-TAF-LKP-YHQHTQSVVASSTHLINAFAQLER 506 (759)
Q Consensus 432 lriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLv-el-~~r~-~~~-~~~-~~~~~~~~~~~~~~i~~af~~~~~ 506 (759)
-|||+|++..+.....++.+..+.... ...++++|++ +. +... ... -.. .+...+....+.++.++.++.++
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 81 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKL--GAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKL- 81 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHc--CCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHh-
Confidence 379999999999988888887766433 4789999998 63 1000 000 000 00000011112233333332210
Q ss_pred hcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEE
Q 044944 507 SYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGV 580 (759)
Q Consensus 507 ~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgI 580 (759)
..... .++.... ..+..+.|++.|++.++|+|++|.|++ ++.++|++++||||.|
T Consensus 82 ~~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 82 TGSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HSCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEE
T ss_pred hccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEe
Confidence 11222 3443333 258999999999999999999998754 4467999999999876
No 33
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.92 E-value=1.5e-05 Score=73.21 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=37.0
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEee-e
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFV-S 637 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~-~ 637 (759)
.++|++++.|.++++.|+++|.++|+..+.+++++|++ +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 46999999999999999999999999999999999998 5
No 34
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.89 E-value=7.7e-05 Score=71.55 Aligned_cols=135 Identities=12% Similarity=0.162 Sum_probs=75.2
Q ss_pred ceEEEEeeccCc---------ChHHHHHHHHHHh-hC--CCeEEEEEEeeeCCCCCCC---C--C-C------CCcchhh
Q 044944 599 SYHIVMLFVGGA---------DDREALAYSRLMV-EH--PNISLTVVWFVSSDPDTSS---G--I-E------TTDDRDL 654 (759)
Q Consensus 599 ~~~i~~~f~GG~---------ddreAL~~a~rma-~~--~~v~ltv~r~~~~~~~~~~---~--~-~------~~~~~~~ 654 (759)
.++|++++.|.+ .++.|+++|.+++ +. .+.+|+++|+.+....... . . . .+..++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 469999999999 8999999999986 54 6999999999854211000 0 0 0 0011122
Q ss_pred HHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhc--cCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhc
Q 044944 655 DNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLT--ENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVN 732 (759)
Q Consensus 655 d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las 732 (759)
.++.++++........+.++.++. .|. ..+.|.+.+ .++||+|+|+++... | +.--+|-+.+-+..
T Consensus 85 ~~~~l~~~~~~~~~~g~~~~~~v~-~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~---------~-~~~~~Gsva~~vl~ 152 (175)
T 2gm3_A 85 GLHLLEFFVNKCHEIGVGCEAWIK-TGD-PKDVICQEVKRVRPDFLVVGSRGLGR---------F-QKVFVGTVSAFCVK 152 (175)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEE-ESC-HHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCceEEEEe-cCC-HHHHHHHHHHHhCCCEEEEeCCCCCh---------h-hhhhcCchHHHHHh
Confidence 335666665543111233322222 231 222332222 379999999986421 1 12237887777775
Q ss_pred CCCCCceEEEeecc
Q 044944 733 SSEEFSVLVVQQQP 746 (759)
Q Consensus 733 ~d~~~SvLvvqq~~ 746 (759)
. ..|+||||....
T Consensus 153 ~-a~~pVlvv~~~~ 165 (175)
T 2gm3_A 153 H-AECPVMTIKRNA 165 (175)
T ss_dssp H-CSSCEEEEECCG
T ss_pred C-CCCCEEEEcCCc
Confidence 4 567999998653
No 35
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.75 E-value=5.1e-05 Score=78.16 Aligned_cols=131 Identities=17% Similarity=0.265 Sum_probs=81.0
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCC------CCCCCCCc----------chhhHHHHHHHhhh
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDT------SSGIETTD----------DRDLDNHAFDEFKD 664 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~------~~~~~~~~----------~~~~d~~~~~~~~~ 664 (759)
+|++++.|++.++.|+++|.++|+..+.+++++|+++..... .....++. .++..++.++++..
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQ 81 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999998642100 00000010 11223345666655
Q ss_pred hc--CCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEE
Q 044944 665 SV--VTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVV 742 (759)
Q Consensus 665 ~~--~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv 742 (759)
.. .+-.+.+... .|. ..+.|.+.+.++||+|+|+++... + | +..-+|...+-+... ..|+||||
T Consensus 82 ~~~~~g~~~~~~~~---~g~-~~~~I~~~~~~~dliV~G~~g~~~-----~---~-~~~~~Gs~~~~v~~~-a~~PVlvv 147 (268)
T 3ab8_A 82 SALAAGVAVEAVLE---EGV-PHEAILRRARAADLLVLGRSGEAH-----G---D-GFGGLGSTADRVLRA-SPVPVLLA 147 (268)
T ss_dssp HHHHTTCCEEEEEE---EEC-HHHHHHHHHTTCSEEEEESSCTTS-----C---T-TCCSCCHHHHHHHHH-CSSCEEEE
T ss_pred HHHhCCCCeEEEEe---cCC-HHHHHHhhccCCCEEEEeccCCCc-----c---c-cccccchhHHHHHHh-CCCCEEEE
Confidence 43 1223444322 232 223333336789999999986420 1 1 223478888877754 56799999
Q ss_pred eec
Q 044944 743 QQQ 745 (759)
Q Consensus 743 qq~ 745 (759)
...
T Consensus 148 ~~~ 150 (268)
T 3ab8_A 148 PGE 150 (268)
T ss_dssp CSS
T ss_pred CCC
Confidence 864
No 36
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.74 E-value=5.7e-05 Score=79.87 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=86.1
Q ss_pred cceeeeeecCCCC-------hHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHH
Q 044944 431 NLRILVCINKEEN-------MNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQ 503 (759)
Q Consensus 431 elriL~cv~~~~~-------~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~ 503 (759)
--||++|++..+. ....++.+..+.........++++|+.+........-.+.....+......++..+.++.
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKE 235 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHH
Confidence 4689999998874 244555554433222012579999998865432111000000000011112333444555
Q ss_pred HHHhcCCceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEee
Q 044944 504 LERSYHGNIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQ 583 (759)
Q Consensus 504 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvd 583 (759)
+.+..... .++....- .+..+.|++.|++.++|||+||.|++....+ -.++++.++|++++||||.|+-.
T Consensus 236 ~~~~~~~~-~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 236 LRQKFSIP-EEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGLSA------AFLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHTTCC-GGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCSTHH------HHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHhCCC-cccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCCcc------ccccHHHHHHHhhCCCCEEEECC
Confidence 54443211 12222222 4779999999999999999999987754332 26899999999999999988655
Q ss_pred CCC
Q 044944 584 RGK 586 (759)
Q Consensus 584 rg~ 586 (759)
+|+
T Consensus 306 ~~~ 308 (319)
T 3olq_A 306 DGF 308 (319)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.62 E-value=0.0001 Score=77.69 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=83.4
Q ss_pred cceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCC--CCCCCCC---cchhhHHHHHHHhhhhc-C----
Q 044944 598 LSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDT--SSGIETT---DDRDLDNHAFDEFKDSV-V---- 667 (759)
Q Consensus 598 ~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~--~~~~~~~---~~~~~d~~~~~~~~~~~-~---- 667 (759)
..++|+++..|+++++.|+++|.++|+..+.+|+++|++++.... ......+ ..++..++.+++++... .
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLR 97 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456999999999999999999999999999999999998643110 0000001 11122234455544332 1
Q ss_pred CCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEeec
Q 044944 668 TKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQQQ 745 (759)
Q Consensus 668 ~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~ 745 (759)
...+.++.++. .| +..+.|.+.++++||+|+|+++... | +..-+|-..+-+... ..|.||||...
T Consensus 98 ~~~~~~~~~~~-~g-~~~~~I~~~a~~~DliV~G~~g~~~---------~-~~~~~Gs~~~~vl~~-~~~PVlvv~~~ 162 (309)
T 3cis_A 98 AGPPTVHSEIV-PA-AAVPTLVDMSKDAVLMVVGCLGSGR---------W-PGRLLGSVSSGLLRH-AHCPVVIIHDE 162 (309)
T ss_dssp SCCSCEEEEEE-SS-CHHHHHHHHGGGEEEEEEESSCTTC---------C-TTCCSCHHHHHHHHH-CSSCEEEECTT
T ss_pred CCCceEEEEEe-cC-CHHHHHHHHhcCCCEEEECCCCCcc---------c-cccccCcHHHHHHHh-CCCCEEEEcCC
Confidence 11233322332 33 2344455555689999999986421 1 123478888877754 56799999754
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.61 E-value=0.00012 Score=76.54 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=77.2
Q ss_pred ceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEe
Q 044944 599 SYHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIV 678 (759)
Q Consensus 599 ~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v 678 (759)
.++|++++.|++.++.|+++|.++|++.+.+|+++|+.++. +.++.++ ++.+++.. .+-++.+ .+.
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~---------~~~~~l~-~~~~~~~~--~~~~~~~--~~~ 72 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR---------DHSAALN-DLAQELRE--EGYSVST--NQA 72 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS---------CCHHHHH-HHHHHHHH--TTCCEEE--EEE
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH---------HHHHHHH-HHHHHHhh--CCCeEEE--EEE
Confidence 46999999999999999999999999999999999998631 1222333 33444432 1223443 333
Q ss_pred CChhhHHHHHHhh--ccCCcEEEEccCCCCCccccccCCcCCCCCccchhhhhhhcCCCCCceEEEee
Q 044944 679 KDGIGTTRVIQTL--TENFDLFIVGKNHDPCSKVTLGLSEWIEYPELGIIGDTLVNSSEEFSVLVVQQ 744 (759)
Q Consensus 679 ~~~~e~~~~i~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq 744 (759)
..+ +..+.|.+. +.++||+|+|+++... + +.--+|..-+-+.-. ..|.||||..
T Consensus 73 ~~g-~~~~~i~~~a~~~~~dliV~G~~~~~~---------~-~~~~~gs~~~~vl~~-~~~PVlvv~~ 128 (290)
T 3mt0_A 73 WKD-SLHQTIIAEQQAEGCGLIIKQHFPDNP---------L-KKAILTPDDWKLLRF-APCPVLMTKT 128 (290)
T ss_dssp CSS-SHHHHHHHHHHHHTCSEEEEECCCSCT---------T-STTSCCHHHHHHHHH-CSSCEEEECC
T ss_pred eCC-CHHHHHHHHHHhcCCCEEEEecccCCc---------h-hhcccCHHHHHHHhc-CCCCEEEecC
Confidence 222 122223222 3579999999986421 1 223367777777643 5668999983
No 39
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.56 E-value=0.051 Score=57.65 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhhcChhHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHhhc
Q 044944 77 TFAEFGMILHIFVLGVQIDLGLIKHIRR---RAVAIGFFGCLIPLIFGMSSFRLIQQQKTRFDVESATGIAASVAANSMT 153 (759)
Q Consensus 77 ~l~~lgl~~llF~~Gle~d~~~l~~~~~---~~~~ia~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~l~ig~~ls~T 153 (759)
.....++.+.||..|++++.+++++..| ......+..+++-=+++++++..+.... ......++++++=+.+
T Consensus 43 ~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~-----~~~~Glil~~~~P~~~ 117 (332)
T 3zux_A 43 PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPA-----EIAVGVILVGCCPGGT 117 (332)
T ss_dssp GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHhcCCchh
Confidence 3445678899999999999999985444 3333333444433234555555442211 1111112222221222
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044944 154 SLVVVTSVLKELNMLNSELGRLASSAAMVSDILSWITCMILNGVSD 199 (759)
Q Consensus 154 s~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~v~~~~~~ 199 (759)
+.. ++..+ .+.+. .++.+...++.+++.+.+-+...+..
T Consensus 118 ~s~----v~t~~--a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 118 ASN----VMTYL--ARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHH----HHHHH--TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHH--hCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222 23332 33443 57777888899988877766555443
No 40
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.56 E-value=0.00017 Score=75.30 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=83.3
Q ss_pred cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCC
Q 044944 431 NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 431 elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 510 (759)
.-||++|++..+.....++.+..+.... ...++++|+.+... .++.++.++.+.+..
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~-------------------~~~~l~~~~~~l~~~-- 226 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKKT--GGELHIIHVSEDGD-------------------KTADLRVMEEVIGAE-- 226 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEECSSSC-------------------CHHHHHHHHHHHHHT--
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhhc--CCEEEEEEEccCch-------------------HHHHHHHHHHHHHHc--
Confidence 5689999998887777777776654322 36789999976432 123333333333332
Q ss_pred ceEEEEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEE
Q 044944 511 NIVVQHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVL 581 (759)
Q Consensus 511 ~v~v~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIl 581 (759)
.+.++.... . .+..+.|++.|++.++|||++|.+++....+ -.++++.+++++++||||.|+
T Consensus 227 ~~~~~~~~~-~--g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 227 GIEVHVHIE-S--GTPHKAILAKREEINATTIFMGSRGAGSVMT------MILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp TCCEEEEEE-C--SCHHHHHHHHHHHTTCSEEEEECCCCSCHHH------HHHHCHHHHHHHHCSSCEEEE
T ss_pred CCcEEEEEe-c--CCHHHHHHHHHHhcCcCEEEEeCCCCCCccc------eeeCcHHHHHHhcCCCCEEEE
Confidence 344554333 2 5899999999999999999999987654322 257888999999999999774
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.63 E-value=0.2 Score=51.05 Aligned_cols=222 Identities=10% Similarity=0.100 Sum_probs=137.9
Q ss_pred cceeeeeecCCCChHHHHHHHHhhCCCCCCCceEEEEEeeeecCCcccccccccccccccccchhHHHHHHHHHHHhcCC
Q 044944 431 NLRILVCINKEENMNPIISLLEASNPTRNFPITAFVLQLIELKGSVTAFLKPYHQHTQSVVASSTHLINAFAQLERSYHG 510 (759)
Q Consensus 431 elriL~cv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 510 (759)
.-++|++..+|..-.+++.++..+...+. .+.+.++..-..+ +.+ .++ +.+++.|-+...
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~~~-~~l--------------~~q-l~~l~~~l~~r~- 79 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNTDK-ENL--------------LSQ-LPSISEGFQEEG- 79 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC---CT-TCH--------------HHH-HHHHHHHHHHTT-
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCCCc-cHH--------------HHH-HHHHHHHHHhCC-
Confidence 78999999999999999999999977664 6777777432211 100 122 255566654422
Q ss_pred ceEEEEEEEEccCCChHHHHHHHHhhcC-----CcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCC
Q 044944 511 NIVVQHFTTIAPYASMHDDVCTLALDKR-----AAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRG 585 (759)
Q Consensus 511 ~v~v~~~t~vs~~~~m~~dI~~~A~~~~-----~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg 585 (759)
+..++++-+-.+..+++..+.+.++ .+-|+|++..++. ....++.+.+...+. --.|.|+-+..
T Consensus 80 ---v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~~~~-~~nVlil~~~~ 148 (294)
T 3g40_A 80 ---VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKASMY-RMGVLLFSKHP 148 (294)
T ss_dssp ---CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHHHHT-TCEEEEEECCT
T ss_pred ---ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHHHHh-CceEEEEecCC
Confidence 3455556555788899998888764 7999999875542 223577777776544 55666653321
Q ss_pred CCCCCCcccCCCcceEEEEeec--------cC--cChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhH
Q 044944 586 KIKSIRPTFDFQLSYHIVMLFV--------GG--ADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLD 655 (759)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~~f~--------GG--~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d 655 (759)
.. +. .. .++|=+=.- || .+-..++-+|-.+..+.++++.+..++++ |.+++..
T Consensus 149 ~~-~f----g~--~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d----------e~a~~~a 211 (294)
T 3g40_A 149 QA-GL----GR--QNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT----------AIQAQAA 211 (294)
T ss_dssp TT-TT----TT--SCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS----------HHHHHHH
T ss_pred cc-CC----CC--CceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC----------HHHHHHH
Confidence 11 00 11 124533311 22 35567999999999999999999999865 3566666
Q ss_pred HHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCC
Q 044944 656 NHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDP 706 (759)
Q Consensus 656 ~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~ 706 (759)
++.++++.+...-+...+ ++..+ -.+++++. .+.||+++|-....
T Consensus 212 ~~~l~~Lv~~~Ri~a~~~--vv~~~---F~~il~~s-~~ADL~flGl~~~~ 256 (294)
T 3g40_A 212 ENFLQSLAELARIPNVKM--QVLRE---NPIKSSKL-PFASLHIFSLDPNP 256 (294)
T ss_dssp HHHHHHHHHHHTCCSCEE--EEESS---CTTTSSSC-CCCSEEEEECCSSC
T ss_pred HHHHHHHHHHhcCCceEE--EecCc---hHHHHhhC-cCCCEEEEcCCCCC
Confidence 778888877662222222 22233 33455663 67999999996543
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=78.28 E-value=33 Score=35.73 Aligned_cols=124 Identities=7% Similarity=0.036 Sum_probs=68.6
Q ss_pred HHHHhhcCCCCCchhHHHhHHhhhhhhhhHHHHHHHhcccccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 044944 274 FVFGLCLPDGPPLGTQLVNKLDFFTSGFLIPVFCAMSGIRWEMYLLKES--STRKMELIMVMSYIGKFTGVILSSSFFGI 351 (759)
Q Consensus 274 fvaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlFF~~~G~~~dl~~l~~~--~~~~~~~i~~~~~~~K~i~~~l~~~~~~~ 351 (759)
.++|...|+... .++.. ....+.+.+...|++++..++... .+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~-------~~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFK-------WAGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTG-------GGGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhh-------hhHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466777776321 12333 334667777888999999888643 34444455556677788888888888877
Q ss_pred ChHHHHHHHHHh-hhcchhhHHHHhhhcccCcCchhHHHH-HHHHHHHHHHHHHHHHHHhc
Q 044944 352 SFIKASCLAFIM-CCRGIPEIAMYCMWKDKKTITSQIFAL-LIANMVIVTSIASAVVGYLY 410 (759)
Q Consensus 352 ~~~~~~~lgl~m-~~kG~v~l~~~~~~~~~~~i~~~~~~~-~v~~~lv~t~i~~plv~~l~ 410 (759)
+...+.-+-+.. +|-|..+.++...+. | |.+.-.. ..+..++ +.++.|+.-.++
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t~~a~--G--d~~la~~~~~~stll-~~~~~Pl~~~l~ 155 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMTYLAR--G--NVALSVAVTSVSTLT-SPLLTPAIFLML 155 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHHHHTT--C--CHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHHHHhC--C--CHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 764443333333 344444444333322 2 2232222 2333333 556677765554
No 43
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=67.08 E-value=7.7 Score=39.02 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=53.7
Q ss_pred CcChHHHHHHHHHHhhCCCe--EEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEE-EE----eCCh
Q 044944 609 GADDREALAYSRLMVEHPNI--SLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRV-EI----VKDG 681 (759)
Q Consensus 609 G~ddreAL~~a~rma~~~~v--~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e-~~----v~~~ 681 (759)
.|.|.+|++.|.|+.+. +. ++|++-+=++ . .++.+++... ++-+++...+ -- -.+.
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~--------------~-a~~~lr~ala-~GaD~vi~v~~d~~~~~~~~~ 101 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPA--------------Q-CQETIRTALA-MGADRGIHVEVPPAEAERLGP 101 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEEST--------------T-HHHHHHHHHH-HTCSEEEEEECCHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh--------------h-HHHHHHHHHh-cCCCEEEEEecChhhcccCCH
Confidence 69999999999999987 55 8887766432 1 1233333321 2334554433 11 1133
Q ss_pred hhHHHHHHhhc--cCCcEEEEccCCCC-----CccccccCCcC
Q 044944 682 IGTTRVIQTLT--ENFDLFIVGKNHDP-----CSKVTLGLSEW 717 (759)
Q Consensus 682 ~e~~~~i~~~~--~~~DL~iVGr~~~~-----~~~~~~gl~~w 717 (759)
..+..+|.+.. .+|||++.|+.... -.|+++.+.+|
T Consensus 102 ~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 102 LQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 44444444442 36999999998732 24556666666
No 44
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=63.09 E-value=12 Score=37.54 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=53.8
Q ss_pred CcChHHHHHHHHHHhhCCCe--EEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEE-EE----eCCh
Q 044944 609 GADDREALAYSRLMVEHPNI--SLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRV-EI----VKDG 681 (759)
Q Consensus 609 G~ddreAL~~a~rma~~~~v--~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e-~~----v~~~ 681 (759)
.|.|.+|++.|.|+.+. +. ++|++-+=++ . .++.+++... ++-+++...+ -- -.+.
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~--------------~-a~~~lr~ala-~GaD~vi~v~~d~~~~~~~~~ 98 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK--------------Q-AAETLRTALA-MGADRAILVVAADDVQQDIEP 98 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG--------------G-GHHHHHHHHH-HTCSEEEEEECCSSTTCCCCH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh--------------h-HHHHHHHHHh-cCCCEEEEEecChhhcccCCH
Confidence 68999999999999987 55 8887766432 1 1223333321 2334454433 11 1234
Q ss_pred hhHHHHHHhhc--cCCcEEEEccCCCC-----CccccccCCcC
Q 044944 682 IGTTRVIQTLT--ENFDLFIVGKNHDP-----CSKVTLGLSEW 717 (759)
Q Consensus 682 ~e~~~~i~~~~--~~~DL~iVGr~~~~-----~~~~~~gl~~w 717 (759)
..+..+|.+.. .+|||++.|+.... -.|+++.+.+|
T Consensus 99 ~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 99 LAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 44544554442 36999999998732 24555666566
No 45
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=62.43 E-value=13 Score=31.36 Aligned_cols=57 Identities=7% Similarity=-0.002 Sum_probs=41.4
Q ss_pred ChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCC
Q 044944 525 SMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRG 585 (759)
Q Consensus 525 ~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg 585 (759)
...+.|.+++++++++.|++|..++. ||.........+.+-+++-++ +.+| .++|--
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECCC
Confidence 34567888889999999999987764 454333334577888888777 8998 557653
No 46
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=57.50 E-value=11 Score=38.09 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=52.8
Q ss_pred CcChHHHHHHHHHHhhCCCe--EEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEe---CChhh
Q 044944 609 GADDREALAYSRLMVEHPNI--SLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIV---KDGIG 683 (759)
Q Consensus 609 G~ddreAL~~a~rma~~~~v--~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v---~~~~e 683 (759)
.|.|.||++.|.|+++..+. ++|++.+=++ . .++.+++... ++-+++...+--- .+...
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~--------------~-~~~~lr~ala-~GaD~vi~v~d~~~~~~~~~~ 99 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD--------------R-VDESLRKCLA-KGADRAVRVWDDAAEGSDAIV 99 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG--------------G-GHHHHHHHHH-TTCSEEEEECCGGGTTCCHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCch--------------h-HHHHHHHHHh-cCCCEEEEEcCcccccCCHHH
Confidence 68999999999999875444 7887766322 1 1233333321 2334444333111 12334
Q ss_pred HHHHHHhhc--cCCcEEEEccCCCC-----CccccccCCcC
Q 044944 684 TTRVIQTLT--ENFDLFIVGKNHDP-----CSKVTLGLSEW 717 (759)
Q Consensus 684 ~~~~i~~~~--~~~DL~iVGr~~~~-----~~~~~~gl~~w 717 (759)
+..+|.+.. .+||+++.|+.... -.|++..+.+|
T Consensus 100 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 100 VGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 444444442 26999999998732 24555555566
No 47
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=57.05 E-value=12 Score=39.05 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=39.8
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV 666 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 666 (759)
++++.|-||+|+--.|.++.+.....+..+.++++-.. .+..-+.++++++.+++
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg-----------~~~~et~~~v~~~~~~~ 102 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR-----------WKFQEMYRFRDQMVEEM 102 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS-----------CCCHHHHHHHHHHHHTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC-----------CCCHHHHHHHHHHHHHc
Confidence 78899999999999999999987654556677777433 11122446777777766
No 48
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=56.26 E-value=32 Score=37.35 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=61.8
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhC-CCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEe
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEH-PNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIV 678 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~-~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v 678 (759)
.+|++.|-||+|+--.|.++.++.+. ++.++.++|+-... ..+...|.+.++++..+++ +.+..+.+
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhgl---------r~~s~~~~~~v~~~~~~lg---i~~~v~~~ 81 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGL---------SANADAWVTHCENVCQQWQ---VPLVVERV 81 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSC---------CSSHHHHHHHHHHHHHHTT---CCEEEECC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCC---------CcccHHHHHHHHHHHHHcC---CcEEEEEe
Confidence 38999999999999999999998877 88999999995331 1122345667778777652 22222222
Q ss_pred C------ChhhHHH-----HHHhhccCCcEEEEccCCC
Q 044944 679 K------DGIGTTR-----VIQTLTENFDLFIVGKNHD 705 (759)
Q Consensus 679 ~------~~~e~~~-----~i~~~~~~~DL~iVGr~~~ 705 (759)
+ +.++... .+.+...++|-++.|.+.+
T Consensus 82 ~~~~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 82 QLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp CCCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 1 1222222 3445555699999998753
No 49
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=55.90 E-value=55 Score=31.39 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=36.3
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV 666 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 666 (759)
+|++.|-||+|+--.|.++.+.. + ++.++++... .+...+.++++++.+++
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g-----------~~~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG-----------YLFPETYRFIDELTDKL 96 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECS-----------CBCHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCC-----------CCCHHHHHHHHHHHHHh
Confidence 89999999999999999998874 3 3567776533 11123456777777765
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=54.38 E-value=39 Score=34.77 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=55.7
Q ss_pred EEEEeeccCcChHHHHHHHHHHhh------------------CCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHh
Q 044944 601 HIVMLFVGGADDREALAYSRLMVE------------------HPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEF 662 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~------------------~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 662 (759)
+|++.|-||+|+--.|.++.+... .+...+.++++... .+..-..++++++
T Consensus 55 ~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg-----------~~fpet~~fv~~~ 123 (306)
T 2wsi_A 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQE-----------ETFPTLENFVLET 123 (306)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCT-----------TCCHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCC-----------CCCHHHHHHHHHH
Confidence 799999999999999999988631 13456777777433 2234455778888
Q ss_pred hhhcCCCCeEEEEEEeC-----ChhhHHHHHHhhccCCcEEEEccCCCC
Q 044944 663 KDSVVTKKITLRVEIVK-----DGIGTTRVIQTLTENFDLFIVGKNHDP 706 (759)
Q Consensus 663 ~~~~~~~~v~~~e~~v~-----~~~e~~~~i~~~~~~~DL~iVGr~~~~ 706 (759)
.+++ .+.......+ .-.+......+.....+-+++|.|.+.
T Consensus 124 ~~~y---gl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 124 SERY---CLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HHHT---TEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HHHc---CCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 7776 1222111111 111222223333345789999999865
No 51
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=49.81 E-value=21 Score=35.84 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=38.8
Q ss_pred EEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc
Q 044944 601 HIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV 666 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 666 (759)
++++.|-||+|+--.|.++.+.... +..+.|+++-.. .+..-+.++++++.+++
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg-----------~~~~et~~~v~~~~~~~ 96 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL-----------HHFPQTLTLKNEIEKKY 96 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS-----------CBCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC-----------CCCHHHHHHHHHHHHHh
Confidence 6889999999999999999988764 455677776332 12223456777777776
No 52
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=46.98 E-value=58 Score=35.61 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=62.2
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeC
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVK 679 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~ 679 (759)
.+|++.+-||+|+--+|.++.++.+..+.++.++|+-... . ..+...|.+.++++..++ .+.+....++
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhgl----r----g~~s~~~~~~v~~~~~~l---gi~~~v~~~~ 87 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMF----R----GRESEEEMEFVKRFCVER---RILCETAQID 87 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTT----C----THHHHHHHHHHHHHHHHT---TCEEEEEECC
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCC----C----ccccHHHHHHHHHHHHHc---CCcEEEEEec
Confidence 3899999999999999999999988888899999996431 0 122345667788887765 2344333332
Q ss_pred C----------hhhHHH-----HHHhhc--cCCcEEEEccCCC
Q 044944 680 D----------GIGTTR-----VIQTLT--ENFDLFIVGKNHD 705 (759)
Q Consensus 680 ~----------~~e~~~-----~i~~~~--~~~DL~iVGr~~~ 705 (759)
. .++... .+.+.+ .++|-+..|.+.+
T Consensus 88 ~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 88 VPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp CHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 1 122211 222332 3689999998754
No 53
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=42.36 E-value=80 Score=32.42 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=43.2
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeE-EEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhc
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNIS-LTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSV 666 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~-ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 666 (759)
.+|++.+-||+|+--.|.++.+..+..+.+ +.++|+-... ..+...|.+.++++..++
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~---------r~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML---------RESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS---------STHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC---------CcccHHHHHHHHHHHHHc
Confidence 389999999999999999999887776777 8888885331 112344566777777765
No 54
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=39.66 E-value=34 Score=30.74 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=45.7
Q ss_pred EEEEEEEEc--cCCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCC
Q 044944 513 VVQHFTTIA--PYASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRG 585 (759)
Q Consensus 513 ~v~~~t~vs--~~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg 585 (759)
..+|...+. ......+.|.++.++.+++.||+|..++. ||.........+.+-+++-++-+.+| .++|--
T Consensus 26 ~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DER 97 (138)
T 1nu0_A 26 TARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEV-KLHDER 97 (138)
T ss_dssp EEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEE
T ss_pred EEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 344454442 23344689999999999999999987654 45432222345667777766668898 556653
No 55
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=37.39 E-value=95 Score=31.88 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=51.3
Q ss_pred EEEEeeccCcChHHHHHHHHHHh-h-----------------CCCeEEEEEEeeeCCCCCCCCCCCCcchhhHHHHHHHh
Q 044944 601 HIVMLFVGGADDREALAYSRLMV-E-----------------HPNISLTVVWFVSSDPDTSSGIETTDDRDLDNHAFDEF 662 (759)
Q Consensus 601 ~i~~~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 662 (759)
++++.|-||+|+--.|.++.+.- + .|...+.|+.+-... +-.-=.++++++
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~-----------~FpET~ef~d~~ 128 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDD-----------TFKTLENFIEET 128 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTT-----------CCHHHHHHHHHH
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCC-----------CCHHHHHHHHHH
Confidence 69999999999999999998852 1 123466677664321 111112577777
Q ss_pred hhhcCCCCeEEEEEEeCC---hhhHHHHHHhhccCCcEEEEccCCC
Q 044944 663 KDSVVTKKITLRVEIVKD---GIGTTRVIQTLTENFDLFIVGKNHD 705 (759)
Q Consensus 663 ~~~~~~~~v~~~e~~v~~---~~e~~~~i~~~~~~~DL~iVGr~~~ 705 (759)
.++++ +..+....+. -.+....+++....+|.+++|.|..
T Consensus 129 ~~~yg---L~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 129 SLRYS---LSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HHHTT---EEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHHhC---CcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 77661 2211111111 1123334455444699999999987
No 56
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=35.65 E-value=1.2e+02 Score=31.50 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=65.8
Q ss_pred cccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEE
Q 044944 554 CLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVV 633 (759)
Q Consensus 554 g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~ 633 (759)
|.++.+-....++.+.|-+....+|+|=+..... .-||.+..+..++|+++.+.- +..+
T Consensus 188 GslenR~r~~~eiv~avr~~v~~pv~vRls~~~~------------------~~~g~~~~~~~~la~~L~~~G---vd~i 246 (340)
T 3gr7_A 188 GSPENRYRFLGEVIDAVREVWDGPLFVRISASDY------------------HPDGLTAKDYVPYAKRMKEQG---VDLV 246 (340)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCC------------------STTSCCGGGHHHHHHHHHHTT---CCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCceEEEeccccc------------------cCCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 4444443456677777777777888872221110 125778889999999998764 3344
Q ss_pred EeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCC
Q 044944 634 WFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHD 705 (759)
Q Consensus 634 r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~ 705 (759)
++......+ . .. ......+.++++++++.. +-.|...- -+.+.++..+.+++ +..|+|.+||.-=
T Consensus 247 ~vs~g~~~~-~-~~-~~~~~~~~~~~~~ik~~~-~iPVi~~G-gI~s~e~a~~~L~~--G~aD~V~iGR~~l 311 (340)
T 3gr7_A 247 DVSSGAIVP-A-RM-NVYPGYQVPFAELIRREA-DIPTGAVG-LITSGWQAEEILQN--GRADLVFLGRELL 311 (340)
T ss_dssp EEECCCSSC-C-CC-CCCTTTTHHHHHHHHHHT-TCCEEEES-SCCCHHHHHHHHHT--TSCSEEEECHHHH
T ss_pred EEecCCccC-C-CC-CCCccccHHHHHHHHHHc-CCcEEeeC-CCCCHHHHHHHHHC--CCeeEEEecHHHH
Confidence 444321100 0 00 011122345677777654 11222100 11244454455554 4599999999753
No 57
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=35.42 E-value=11 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhccc
Q 044944 141 TGIAASVAANSMTSLVVVTSVLKELNM 167 (759)
Q Consensus 141 ~~~l~ig~~ls~Ts~~vv~~iL~el~l 167 (759)
..++.+|+++|+|++..+..++++++.
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 346789999999999999999998874
No 58
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=34.89 E-value=51 Score=30.03 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=42.4
Q ss_pred CCChHHHHHHHHhhcCCcEEEecCCCCCccccccccCchhhHHHHHhhhhcCCcceEEEeeCC
Q 044944 523 YASMHDDVCTLALDKRAAIIIVPFHKQWGVNCLVESSELPIRALNGNILDKAPCSVGVLVQRG 585 (759)
Q Consensus 523 ~~~m~~dI~~~A~~~~~~lIilp~h~~~~~~g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg 585 (759)
.....+.|.++.++++++.|++|...+ .||.-.......|.+...+.++.+++|-. ||--
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~--~nGt~~~~~~~ar~f~~~L~~~~~lpV~~-vDEr 99 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN--MNGTVGPRGEASQTFAKVLETTYNVPVVL-WDER 99 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC--BTTBCCHHHHHHHHHHHHHHHHHCSCEEE-ECCS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec--CCcchhHHHHHHHHHHHHHHHhhCCCEEE-ecCC
Confidence 467889999999999999999997653 34542111223477777777777899944 6653
No 59
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=31.30 E-value=4e+02 Score=27.34 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=62.6
Q ss_pred cccccCchhhHHHHHhhhhcCCcceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEE
Q 044944 554 CLVESSELPIRALNGNILDKAPCSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLTVV 633 (759)
Q Consensus 554 g~~~~~~~~~~~~n~~vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~ 633 (759)
|.++.+-....++.+.|-+..+.+|++=+..... +-||-+..++.++|+++.+.. +.-+
T Consensus 188 Gslenr~r~~~eiv~avr~~v~~pv~vris~~~~------------------~~~g~~~~~~~~~a~~l~~~G---vd~i 246 (338)
T 1z41_A 188 GSPENRYRFLREIIDEVKQVWDGPLFVRVSASDY------------------TDKGLDIADHIGFAKWMKEQG---VDLI 246 (338)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCC------------------STTSCCHHHHHHHHHHHHHTT---CCEE
T ss_pred cchhhhHHHHHHHHHHHHHHcCCcEEEEecCccc------------------CCCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 4343333345667777766667788773222111 115778889999999998764 2334
Q ss_pred EeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCC
Q 044944 634 WFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHD 705 (759)
Q Consensus 634 r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~ 705 (759)
++.......... ......+.++++++++.. +..+.-.. -+.+.++..+.+++ +..|++.+||.--
T Consensus 247 ~v~~~~~~~~~~---~~~~~~~~~~~~~ir~~~-~iPVi~~G-gi~s~~~a~~~l~~--G~aD~V~iGR~~i 311 (338)
T 1z41_A 247 DCSSGALVHADI---NVFPGYQVSFAEKIREQA-DMATGAVG-MITDGSMAEEILQN--GRADLIFIGRELL 311 (338)
T ss_dssp EEECCCSSCCCC---CCCTTTTHHHHHHHHHHH-CCEEEECS-SCCSHHHHHHHHHT--TSCSEEEECHHHH
T ss_pred EEecCccccCCC---CCCccchHHHHHHHHHHC-CCCEEEEC-CCCCHHHHHHHHHc--CCceEEeecHHHH
Confidence 443221000000 011112345667776654 11111100 01234444445443 4599999999753
No 60
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=31.24 E-value=70 Score=29.19 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=32.1
Q ss_pred EEEEEEccCCChHHHHHHHHhhcCCcEEEecCCCCCc
Q 044944 515 QHFTTIAPYASMHDDVCTLALDKRAAIIIVPFHKQWG 551 (759)
Q Consensus 515 ~~~t~vs~~~~m~~dI~~~A~~~~~~lIilp~h~~~~ 551 (759)
.-...+-|...|+..|.++|++.++|+||-|...+..
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDI 127 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcC
Confidence 4556788999999999999999999999999876653
No 61
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=28.20 E-value=2.3 Score=28.32 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=23.3
Q ss_pred HHHHHHHHhchhhhHHHHHHHhhcCCC
Q 044944 257 GVGFVGTCFGQGSFLGCFVFGLCLPDG 283 (759)
Q Consensus 257 ~~~~~~~~~G~~~~lGafvaGl~i~~~ 283 (759)
..+.++|.++++++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456778999999999999999998874
No 62
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=24.17 E-value=80 Score=32.21 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCC
Q 044944 667 VTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNH 704 (759)
Q Consensus 667 ~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~ 704 (759)
++.|+. .++.|+.+- +++..+.||++|+--..
T Consensus 136 ~dpRv~---v~~~Dg~~~---l~~~~~~yDvIi~D~~d 167 (294)
T 3o4f_A 136 DDPRFK---LVIDDGVNF---VNQTSQTFDVIISDCTD 167 (294)
T ss_dssp GCTTEE---EEESCTTTT---TSCSSCCEEEEEESCCC
T ss_pred CCCcEE---EEechHHHH---HhhccccCCEEEEeCCC
Confidence 456766 667888764 45556679999996643
No 63
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=22.65 E-value=4.8e+02 Score=24.40 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=27.6
Q ss_pred eEEEEeeccCcChHHHHHHHHHHhhCCCeEEEEEEeeeC
Q 044944 600 YHIVMLFVGGADDREALAYSRLMVEHPNISLTVVWFVSS 638 (759)
Q Consensus 600 ~~i~~~f~GG~ddreAL~~a~rma~~~~v~ltv~r~~~~ 638 (759)
.+|++.+-||+|+--++.++.+ .+.++..+++-..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 4899999999999988877765 3567888887543
No 64
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=21.58 E-value=6.7e+02 Score=25.76 Aligned_cols=125 Identities=11% Similarity=0.072 Sum_probs=66.0
Q ss_pred cccccCchhhHHHHHhhhhcCC--cceEEEeeCCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhhCCCeEEE
Q 044944 554 CLVESSELPIRALNGNILDKAP--CSVGVLVQRGKIKSIRPTFDFQLSYHIVMLFVGGADDREALAYSRLMVEHPNISLT 631 (759)
Q Consensus 554 g~~~~~~~~~~~~n~~vl~~Ap--CsVgIlvdrg~~~~~~~~~~~~~~~~i~~~f~GG~ddreAL~~a~rma~~~~v~lt 631 (759)
|.++.+-....++.+.|-+..+ .+|+|=+.... ..-||.+..|+..+|+++.+. +.
T Consensus 187 GslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~------------------~~~~g~~~~~~~~~a~~l~~~----vd 244 (343)
T 3kru_A 187 NSIENRARFLIEVIDEVRKNWPENKPIFVRVSADD------------------YMEGGINIDMMVEYINMIKDK----VD 244 (343)
T ss_dssp SSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCC------------------SSTTSCCHHHHHHHHHHHTTT----CS
T ss_pred cchHhHHHHHHHHHHHHHhcCCccCCeEEEeechh------------------hhccCccHHHHHHHHHHhhcc----cc
Confidence 5555555567888888888775 45766211100 012577889999999999887 33
Q ss_pred EEEeeeCCCCCCCCCCCCcchhhHHHHHHHhhhhcCCCCeEEEEEEeCChhhHHHHHHhhccCCcEEEEccCCCCC
Q 044944 632 VVWFVSSDPDTSSGIETTDDRDLDNHAFDEFKDSVVTKKITLRVEIVKDGIGTTRVIQTLTENFDLFIVGKNHDPC 707 (759)
Q Consensus 632 v~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DL~iVGr~~~~~ 707 (759)
.+++......+ . .. ......+.++.+++++.. +..|.-.. -+.+.++..+.+++ +..|+|.+||.--.+
T Consensus 245 ~i~vs~g~~~~-~-~~-~~~~~~~~~~~~~ir~~~-~iPVi~~G-gi~t~e~Ae~~l~~--G~aD~V~iGR~~lan 313 (343)
T 3kru_A 245 LIDVSSGGLLN-V-DI-NLYPGYQVKYAETIKKRC-NIKTSAVG-LITTQELAEEILSN--ERADLVALGRELLRN 313 (343)
T ss_dssp EEEEECCCSSC-C-CC-CCCTTTTHHHHHHHHHHH-TCEEEEES-SCCCHHHHHHHHHT--TSCSEEEESHHHHHC
T ss_pred EEeccCCceEe-e-ee-cccCceeehHHHHHHHhc-Ccccceee-eeeHHHHHHHHHhc--hhhHHHHHHHHHhcC
Confidence 44443221100 0 00 001112345667776654 11121111 11234444555554 569999999985333
Done!