Query 044945
Match_columns 296
No_of_seqs 209 out of 2532
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.5E-45 3.3E-50 364.0 23.4 282 7-296 284-693 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.6E-42 3.6E-47 349.6 24.2 287 7-296 348-855 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-37 4.2E-42 306.4 10.9 271 7-293 183-504 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3.8E-36 8.2E-41 303.4 15.0 259 7-280 146-457 (857)
5 PLN03218 maturation of RBCL 1; 100.0 1.9E-36 4.2E-41 305.5 10.0 279 8-294 432-765 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 2.5E-35 5.3E-40 297.5 12.7 278 10-295 367-731 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.6 8.9E-16 1.9E-20 99.7 4.3 46 102-147 1-46 (50)
8 PF14432 DYW_deaminase: DYW fa 99.2 5.3E-11 1.1E-15 90.9 6.3 85 199-289 22-115 (116)
9 PF12854 PPR_1: PPR repeat 99.2 2.3E-11 4.9E-16 71.9 2.8 31 101-131 4-34 (34)
10 KOG4422 Uncharacterized conser 99.1 1.1E-09 2.3E-14 98.7 13.0 184 13-227 116-326 (625)
11 PF13041 PPR_2: PPR repeat fam 99.1 1.6E-10 3.5E-15 74.7 5.2 43 150-192 1-44 (50)
12 PF12854 PPR_1: PPR repeat 99.0 8.1E-10 1.8E-14 65.2 3.7 31 149-179 4-34 (34)
13 TIGR00756 PPR pentatricopeptid 98.9 1.4E-09 3.1E-14 64.2 4.2 35 105-139 1-35 (35)
14 PRK11788 tetratricopeptide rep 98.9 9E-09 2E-13 94.9 10.7 249 24-280 49-351 (389)
15 PRK11788 tetratricopeptide rep 98.8 5.1E-08 1.1E-12 89.9 11.2 62 153-217 250-319 (389)
16 PF13812 PPR_3: Pentatricopept 98.7 2.2E-08 4.8E-13 58.9 3.9 33 105-137 2-34 (34)
17 PF01535 PPR: PPR repeat; Int 98.7 2.4E-08 5.3E-13 57.3 3.6 31 105-135 1-31 (31)
18 TIGR02917 PEP_TPR_lipo putativ 98.6 1.9E-07 4.2E-12 93.9 11.7 176 22-207 579-799 (899)
19 TIGR02917 PEP_TPR_lipo putativ 98.6 2.8E-07 6.2E-12 92.7 12.2 128 76-208 574-733 (899)
20 KOG4422 Uncharacterized conser 98.5 1.1E-06 2.3E-11 79.6 10.6 107 12-148 206-321 (625)
21 KOG4318 Bicoid mRNA stability 98.3 2.7E-06 5.8E-11 83.0 9.1 127 86-216 10-274 (1088)
22 PF01535 PPR: PPR repeat; Int 98.2 1.7E-06 3.7E-11 49.4 2.9 30 153-182 1-30 (31)
23 TIGR00756 PPR pentatricopeptid 98.1 3.7E-06 8E-11 49.2 4.0 30 153-182 1-30 (35)
24 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 4.9E-10 45.6 4.1 31 152-182 1-31 (34)
25 PRK15174 Vi polysaccharide exp 97.4 0.0013 2.7E-08 65.4 10.5 178 24-213 90-317 (656)
26 PF13429 TPR_15: Tetratricopep 96.9 0.0016 3.5E-08 57.4 5.2 153 102-273 108-274 (280)
27 PRK15174 Vi polysaccharide exp 96.9 0.04 8.8E-07 54.8 15.5 55 152-206 284-346 (656)
28 TIGR02521 type_IV_pilW type IV 96.8 0.056 1.2E-06 44.8 13.9 143 24-207 45-198 (234)
29 PF08579 RPM2: Mitochondrial r 96.8 0.0053 1.1E-07 46.1 6.3 41 108-148 29-70 (120)
30 TIGR00990 3a0801s09 mitochondr 96.7 0.022 4.8E-07 56.1 12.1 113 77-207 373-496 (615)
31 TIGR02521 type_IV_pilW type IV 96.7 0.015 3.2E-07 48.4 9.5 89 105-207 32-128 (234)
32 PF13429 TPR_15: Tetratricopep 96.6 0.01 2.2E-07 52.3 8.1 122 75-216 116-250 (280)
33 PRK10049 pgaA outer membrane p 96.5 0.082 1.8E-06 53.6 14.9 176 22-214 249-461 (765)
34 KOG4318 Bicoid mRNA stability 96.4 0.0031 6.6E-08 62.4 3.9 67 101-167 201-286 (1088)
35 PF10037 MRP-S27: Mitochondria 96.4 0.015 3.2E-07 54.3 8.2 75 105-192 104-179 (429)
36 PRK15359 type III secretion sy 96.3 0.081 1.8E-06 41.8 10.8 105 86-213 13-125 (144)
37 KOG1126 DNA-binding cell divis 96.2 0.0088 1.9E-07 57.4 5.8 92 111-202 360-479 (638)
38 PF14559 TPR_19: Tetratricopep 96.2 0.012 2.5E-07 39.7 5.0 58 115-186 2-59 (68)
39 cd00189 TPR Tetratricopeptide 96.2 0.11 2.4E-06 35.7 10.2 86 107-206 3-96 (100)
40 KOG1155 Anaphase-promoting com 96.1 0.15 3.3E-06 47.4 12.8 100 105-205 365-493 (559)
41 PRK10747 putative protoheme IX 96.0 0.097 2.1E-06 48.8 11.8 235 26-272 99-386 (398)
42 PF08579 RPM2: Mitochondrial r 96.0 0.012 2.6E-07 44.2 4.3 69 77-147 33-112 (120)
43 PF06239 ECSIT: Evolutionarily 95.8 0.039 8.5E-07 46.4 7.1 74 149-222 44-147 (228)
44 PF06239 ECSIT: Evolutionarily 95.5 0.07 1.5E-06 45.0 7.6 100 86-192 34-144 (228)
45 PRK11447 cellulose synthase su 95.4 0.43 9.4E-06 50.7 15.1 88 105-206 604-699 (1157)
46 PF13432 TPR_16: Tetratricopep 95.4 0.079 1.7E-06 35.3 6.4 61 111-185 4-64 (65)
47 TIGR02552 LcrH_SycD type III s 95.4 0.28 6E-06 37.7 10.4 88 106-207 19-114 (135)
48 PRK09782 bacteriophage N4 rece 95.3 0.32 6.9E-06 50.6 13.3 91 83-192 590-683 (987)
49 TIGR00990 3a0801s09 mitochondr 95.3 0.31 6.8E-06 48.0 12.8 49 159-207 515-571 (615)
50 PRK15359 type III secretion sy 95.2 0.17 3.7E-06 39.9 8.8 97 78-192 33-132 (144)
51 PRK10049 pgaA outer membrane p 95.1 0.49 1.1E-05 48.0 13.8 61 153-215 360-428 (765)
52 PF12921 ATP13: Mitochondrial 95.0 0.12 2.6E-06 39.9 7.2 77 103-181 1-81 (126)
53 PRK10370 formate-dependent nit 94.8 0.45 9.7E-06 39.8 10.7 91 103-207 72-173 (198)
54 TIGR00540 hemY_coli hemY prote 94.6 0.61 1.3E-05 43.6 12.2 130 78-214 162-333 (409)
55 PF13428 TPR_14: Tetratricopep 94.4 0.12 2.7E-06 31.7 4.8 39 153-191 2-40 (44)
56 PRK11189 lipoprotein NlpI; Pro 94.3 1.5 3.4E-05 38.9 13.5 109 78-205 73-192 (296)
57 PRK12370 invasion protein regu 94.3 1.1 2.4E-05 43.7 13.5 28 106-133 374-401 (553)
58 KOG1126 DNA-binding cell divis 94.2 0.12 2.6E-06 49.9 6.3 98 105-204 422-549 (638)
59 PRK14574 hmsH outer membrane p 94.0 1.8 4E-05 44.1 14.8 135 76-214 334-484 (822)
60 TIGR02795 tol_pal_ybgF tol-pal 93.9 1.3 2.9E-05 32.6 10.7 92 106-208 4-106 (119)
61 PRK09782 bacteriophage N4 rece 93.8 0.99 2.1E-05 47.0 12.6 125 80-213 520-676 (987)
62 PRK10747 putative protoheme IX 93.7 1.3 2.7E-05 41.3 12.2 95 103-216 262-364 (398)
63 PF13371 TPR_9: Tetratricopept 93.5 0.55 1.2E-05 31.8 7.3 61 112-186 3-63 (73)
64 TIGR02795 tol_pal_ybgF tol-pal 93.4 1 2.2E-05 33.3 9.2 101 78-190 11-114 (119)
65 cd00189 TPR Tetratricopeptide 93.2 0.5 1.1E-05 32.2 6.9 87 78-182 9-98 (100)
66 PF04733 Coatomer_E: Coatomer 93.2 0.42 9E-06 42.6 7.7 109 77-204 110-227 (290)
67 PF09295 ChAPs: ChAPs (Chs5p-A 93.1 1 2.2E-05 41.9 10.4 107 77-204 177-294 (395)
68 PRK12370 invasion protein regu 93.0 1 2.2E-05 43.9 10.8 103 86-207 324-435 (553)
69 TIGR02552 LcrH_SycD type III s 92.9 0.88 1.9E-05 34.8 8.4 92 77-186 25-119 (135)
70 PF13414 TPR_11: TPR repeat; P 92.7 0.49 1.1E-05 31.7 6.0 65 105-183 4-69 (69)
71 PF12895 Apc3: Anaphase-promot 92.5 0.26 5.5E-06 34.8 4.5 74 117-203 2-83 (84)
72 PRK11189 lipoprotein NlpI; Pro 92.4 2.3 5E-05 37.8 11.5 89 105-207 65-161 (296)
73 PLN03088 SGT1, suppressor of 92.3 1.5 3.3E-05 40.1 10.5 80 112-205 10-97 (356)
74 COG5010 TadD Flp pilus assembl 92.3 2.3 5E-05 36.8 10.7 90 106-209 102-199 (257)
75 PRK11447 cellulose synthase su 92.2 1.9 4.2E-05 45.9 12.5 65 149-215 600-672 (1157)
76 COG2956 Predicted N-acetylgluc 92.1 1.7 3.8E-05 38.9 9.9 43 86-132 55-97 (389)
77 PRK02603 photosystem I assembl 92.1 2.5 5.5E-05 34.1 10.6 76 105-192 36-112 (172)
78 PRK14574 hmsH outer membrane p 91.9 3 6.5E-05 42.7 12.8 43 149-191 166-208 (822)
79 TIGR00540 hemY_coli hemY prote 91.8 2.5 5.3E-05 39.5 11.5 102 103-216 262-373 (409)
80 KOG1070 rRNA processing protei 91.3 3.1 6.7E-05 44.1 12.0 130 76-212 1507-1668(1710)
81 PF13432 TPR_16: Tetratricopep 91.1 0.53 1.1E-05 31.2 4.6 48 159-206 4-59 (65)
82 PF03704 BTAD: Bacterial trans 90.9 1.6 3.4E-05 34.1 7.9 62 105-180 63-124 (146)
83 PRK10370 formate-dependent nit 90.9 5.6 0.00012 33.1 11.6 98 76-192 80-184 (198)
84 CHL00033 ycf3 photosystem I as 90.5 5.4 0.00012 32.0 10.9 77 105-192 36-112 (168)
85 COG3063 PilF Tfp pilus assembl 90.3 4.4 9.6E-05 34.6 10.2 154 107-278 38-204 (250)
86 PF13424 TPR_12: Tetratricopep 90.3 1.3 2.9E-05 30.3 6.3 68 105-180 6-74 (78)
87 PF10037 MRP-S27: Mitochondria 89.5 0.55 1.2E-05 44.0 4.7 72 74-148 108-182 (429)
88 PF09295 ChAPs: ChAPs (Chs5p-A 89.1 2.2 4.8E-05 39.7 8.3 111 109-274 174-295 (395)
89 PLN03088 SGT1, suppressor of 88.8 3.3 7.2E-05 37.9 9.3 96 79-192 12-110 (356)
90 KOG2003 TPR repeat-containing 88.6 2.8 6E-05 39.3 8.4 44 149-192 656-700 (840)
91 PF03704 BTAD: Bacterial trans 88.5 2.6 5.5E-05 32.9 7.4 102 114-215 16-138 (146)
92 COG3071 HemY Uncharacterized e 88.0 15 0.00032 33.9 12.5 233 27-274 100-388 (400)
93 PRK10803 tol-pal system protei 88.0 8.7 0.00019 33.7 11.0 92 105-207 144-246 (263)
94 PF05843 Suf: Suppressor of fo 87.8 2.8 6.1E-05 37.0 7.9 104 86-206 21-135 (280)
95 KOG4626 O-linked N-acetylgluco 87.7 14 0.0003 36.4 12.6 177 10-192 214-428 (966)
96 KOG1128 Uncharacterized conser 87.6 3.6 7.8E-05 40.7 8.9 100 105-206 425-615 (777)
97 KOG1155 Anaphase-promoting com 87.4 1.9 4.2E-05 40.4 6.7 79 114-192 272-370 (559)
98 PF12569 NARP1: NMDA receptor- 87.4 3.8 8.3E-05 39.6 9.0 65 113-192 13-78 (517)
99 COG4783 Putative Zn-dependent 87.2 7.3 0.00016 36.7 10.4 68 110-192 346-414 (484)
100 PF14559 TPR_19: Tetratricopep 87.1 0.87 1.9E-05 30.3 3.4 45 163-207 2-54 (68)
101 KOG3941 Intermediate in Toll s 86.6 2 4.4E-05 37.9 6.0 44 105-148 68-116 (406)
102 KOG2002 TPR-containing nuclear 86.1 12 0.00027 38.3 11.8 123 78-216 655-807 (1018)
103 COG3071 HemY Uncharacterized e 86.1 14 0.0003 34.1 11.3 99 106-205 265-388 (400)
104 PF13371 TPR_9: Tetratricopept 86.1 2.8 6E-05 28.2 5.6 49 160-208 3-59 (73)
105 KOG3941 Intermediate in Toll s 85.9 3.4 7.4E-05 36.5 7.0 26 193-218 138-163 (406)
106 PF13414 TPR_11: TPR repeat; P 85.5 4.4 9.4E-05 26.9 6.3 53 151-203 2-63 (69)
107 cd05804 StaR_like StaR_like; a 85.4 9.9 0.00022 34.2 10.5 86 107-206 117-214 (355)
108 PF04733 Coatomer_E: Coatomer 85.0 16 0.00035 32.4 11.3 113 76-207 138-265 (290)
109 PF12569 NARP1: NMDA receptor- 84.7 17 0.00038 35.1 12.0 100 86-191 131-233 (517)
110 KOG1129 TPR repeat-containing 84.4 1.3 2.8E-05 39.8 3.9 109 77-192 231-364 (478)
111 KOG3081 Vesicle coat complex C 84.3 3.9 8.5E-05 35.7 6.6 118 86-208 93-237 (299)
112 PRK15179 Vi polysaccharide bio 84.3 10 0.00023 38.0 10.7 92 101-206 116-216 (694)
113 TIGR03302 OM_YfiO outer membra 84.0 21 0.00045 30.1 11.3 91 105-207 34-144 (235)
114 KOG4626 O-linked N-acetylgluco 83.9 19 0.00042 35.4 11.6 165 105-276 117-315 (966)
115 KOG3616 Selective LIM binding 83.7 1 2.2E-05 44.6 3.1 98 27-127 748-847 (1636)
116 PF12688 TPR_5: Tetratrico pep 83.3 15 0.00033 28.0 9.0 62 112-184 9-70 (120)
117 COG4783 Putative Zn-dependent 82.5 27 0.0006 33.1 11.8 83 77-178 348-434 (484)
118 COG2956 Predicted N-acetylgluc 82.3 9.9 0.00021 34.3 8.5 50 117-180 48-97 (389)
119 KOG1840 Kinesin light chain [C 82.1 11 0.00024 36.3 9.5 134 19-181 250-396 (508)
120 PLN03098 LPA1 LOW PSII ACCUMUL 82.1 14 0.00031 34.8 9.9 90 103-210 74-177 (453)
121 COG5010 TadD Flp pilus assembl 82.0 21 0.00046 31.0 10.2 92 77-186 108-202 (257)
122 PF12921 ATP13: Mitochondrial 81.5 2.7 5.9E-05 32.4 4.3 47 101-147 49-96 (126)
123 cd05804 StaR_like StaR_like; a 81.1 21 0.00046 32.0 10.8 55 153-207 115-177 (355)
124 PF13176 TPR_7: Tetratricopept 80.9 3 6.4E-05 24.2 3.4 26 106-131 1-26 (36)
125 PF12895 Apc3: Anaphase-promot 80.4 1.9 4.1E-05 30.2 2.9 58 105-177 26-83 (84)
126 PF00515 TPR_1: Tetratricopept 80.0 4.9 0.00011 22.5 4.1 32 153-184 2-33 (34)
127 PF13176 TPR_7: Tetratricopept 79.8 4 8.6E-05 23.6 3.7 26 154-179 1-26 (36)
128 PRK15363 pathogenicity island 79.7 24 0.00052 28.3 9.2 79 113-205 44-130 (157)
129 KOG4340 Uncharacterized conser 79.7 9.4 0.0002 34.1 7.4 167 113-289 87-283 (459)
130 PF07719 TPR_2: Tetratricopept 78.3 8.4 0.00018 21.3 4.8 32 154-185 3-34 (34)
131 PF13374 TPR_10: Tetratricopep 77.4 6.8 0.00015 22.7 4.4 29 152-180 2-30 (42)
132 PRK15179 Vi polysaccharide bio 77.2 25 0.00053 35.5 10.5 89 104-206 86-182 (694)
133 COG5107 RNA14 Pre-mRNA 3'-end 77.0 16 0.00034 34.6 8.3 74 105-178 398-492 (660)
134 PF13170 DUF4003: Protein of u 76.9 43 0.00094 29.9 11.1 24 193-216 197-220 (297)
135 PF09976 TPR_21: Tetratricopep 76.9 15 0.00033 28.6 7.5 23 112-134 56-78 (145)
136 COG3629 DnrI DNA-binding trans 76.6 18 0.0004 31.9 8.4 62 105-180 154-215 (280)
137 PF09976 TPR_21: Tetratricopep 76.0 32 0.0007 26.7 9.1 62 106-183 14-79 (145)
138 KOG1173 Anaphase-promoting com 75.4 23 0.00049 34.3 9.1 63 152-216 455-525 (611)
139 KOG1129 TPR repeat-containing 75.3 37 0.0008 30.9 9.9 101 108-210 227-356 (478)
140 KOG1174 Anaphase-promoting com 75.1 26 0.00057 32.8 9.1 54 149-202 365-428 (564)
141 PF05843 Suf: Suppressor of fo 74.2 12 0.00025 33.1 6.8 56 152-207 1-65 (280)
142 PF13374 TPR_10: Tetratricopep 74.0 5.7 0.00012 23.1 3.4 28 105-132 3-30 (42)
143 PF13428 TPR_14: Tetratricopep 73.6 6 0.00013 23.9 3.4 28 106-133 3-30 (44)
144 KOG1070 rRNA processing protei 73.1 17 0.00036 39.0 8.2 167 104-283 1458-1670(1710)
145 PRK02603 photosystem I assembl 72.8 29 0.00062 27.8 8.3 75 77-168 43-122 (172)
146 TIGR03302 OM_YfiO outer membra 72.6 56 0.0012 27.4 11.6 28 106-133 72-99 (235)
147 PRK14720 transcript cleavage f 72.5 27 0.00058 36.2 9.5 102 101-204 27-175 (906)
148 PRK10153 DNA-binding transcrip 71.5 28 0.0006 33.7 9.1 67 105-186 421-487 (517)
149 COG3063 PilF Tfp pilus assembl 70.3 48 0.001 28.5 9.0 52 77-132 43-97 (250)
150 PF11848 DUF3368: Domain of un 70.2 10 0.00023 23.7 4.0 34 114-147 12-45 (48)
151 KOG3081 Vesicle coat complex C 68.9 57 0.0012 28.7 9.3 56 117-186 186-241 (299)
152 PF13181 TPR_8: Tetratricopept 68.8 12 0.00025 20.8 3.8 31 153-183 2-32 (34)
153 KOG3616 Selective LIM binding 68.4 12 0.00025 37.6 5.6 67 86-179 752-818 (1636)
154 KOG4570 Uncharacterized conser 67.6 21 0.00045 32.2 6.6 35 149-183 132-166 (418)
155 KOG1914 mRNA cleavage and poly 66.7 57 0.0012 31.6 9.6 97 101-212 364-469 (656)
156 KOG0553 TPR repeat-containing 66.4 21 0.00046 31.7 6.4 76 115-192 92-189 (304)
157 KOG1915 Cell cycle control pro 66.2 21 0.00045 34.0 6.6 79 82-180 154-235 (677)
158 KOG2076 RNA polymerase III tra 66.1 83 0.0018 32.2 11.1 90 77-185 148-240 (895)
159 PRK15363 pathogenicity island 65.6 16 0.00034 29.4 5.0 50 159-208 42-99 (157)
160 KOG3060 Uncharacterized conser 65.3 58 0.0013 28.5 8.6 89 117-206 99-219 (289)
161 smart00028 TPR Tetratricopepti 62.5 19 0.00041 18.3 3.8 30 154-183 3-32 (34)
162 KOG0547 Translocase of outer m 62.0 37 0.0008 32.5 7.4 113 80-204 439-563 (606)
163 KOG1840 Kinesin light chain [C 61.9 45 0.00097 32.2 8.3 26 106-131 369-394 (508)
164 KOG3785 Uncharacterized conser 61.0 34 0.00075 31.4 6.8 43 149-192 391-433 (557)
165 PF13424 TPR_12: Tetratricopep 60.9 33 0.00071 23.1 5.6 29 153-181 6-34 (78)
166 PF10602 RPN7: 26S proteasome 59.5 81 0.0018 25.7 8.5 65 105-180 37-101 (177)
167 PF13174 TPR_6: Tetratricopept 59.3 13 0.00027 20.3 2.7 24 160-183 8-31 (33)
168 KOG2047 mRNA splicing factor [ 58.7 1.2E+02 0.0027 30.1 10.5 60 154-213 389-457 (835)
169 PLN03098 LPA1 LOW PSII ACCUMUL 58.6 49 0.0011 31.3 7.7 59 149-207 72-141 (453)
170 KOG4340 Uncharacterized conser 58.5 1E+02 0.0022 27.7 9.2 31 13-43 179-210 (459)
171 PF07721 TPR_4: Tetratricopept 57.7 20 0.00044 18.9 3.1 22 155-176 4-25 (26)
172 PF14689 SPOB_a: Sensor_kinase 57.5 15 0.00033 24.3 3.2 26 107-132 26-51 (62)
173 KOG2047 mRNA splicing factor [ 55.4 62 0.0013 32.1 7.9 110 106-216 389-588 (835)
174 KOG2041 WD40 repeat protein [G 54.3 24 0.00053 35.2 5.1 24 254-277 930-953 (1189)
175 KOG2076 RNA polymerase III tra 54.1 93 0.002 31.9 9.1 88 105-205 415-510 (895)
176 PF11663 Toxin_YhaV: Toxin wit 52.7 10 0.00023 29.5 1.9 24 116-139 107-130 (140)
177 COG4003 Uncharacterized protei 51.8 34 0.00075 24.2 4.2 37 92-134 25-61 (98)
178 PF10366 Vps39_1: Vacuolar sor 51.5 23 0.0005 26.4 3.6 38 86-132 30-67 (108)
179 PF13512 TPR_18: Tetratricopep 51.3 1.1E+02 0.0025 24.0 7.6 67 106-184 13-79 (142)
180 PF10366 Vps39_1: Vacuolar sor 51.3 27 0.00059 26.0 4.0 65 108-180 3-67 (108)
181 PF02284 COX5A: Cytochrome c o 51.2 57 0.0012 24.3 5.5 44 149-192 42-85 (108)
182 PRK10153 DNA-binding transcrip 50.9 1.6E+02 0.0034 28.7 10.1 103 101-206 334-481 (517)
183 KOG3785 Uncharacterized conser 50.3 54 0.0012 30.1 6.3 20 111-130 400-419 (557)
184 PF14853 Fis1_TPR_C: Fis1 C-te 50.3 25 0.00054 22.6 3.2 26 161-186 10-35 (53)
185 PF13431 TPR_17: Tetratricopep 48.4 21 0.00045 20.3 2.4 23 150-172 11-33 (34)
186 PLN02789 farnesyltranstransfer 48.2 2.1E+02 0.0045 25.8 10.8 19 114-132 81-100 (320)
187 TIGR02508 type_III_yscG type I 48.0 1E+02 0.0022 23.0 6.3 31 149-181 67-97 (115)
188 KOG1538 Uncharacterized conser 47.6 65 0.0014 32.1 6.7 26 156-181 777-802 (1081)
189 COG4235 Cytochrome c biogenesi 47.4 1.1E+02 0.0024 27.2 7.7 94 111-207 109-222 (287)
190 KOG2796 Uncharacterized conser 47.2 92 0.002 27.5 7.0 111 86-207 197-315 (366)
191 CHL00033 ycf3 photosystem I as 47.0 1.4E+02 0.0031 23.5 8.3 59 105-177 73-138 (168)
192 COG4455 ImpE Protein of avirul 46.7 1.9E+02 0.0041 24.9 10.1 91 106-212 3-96 (273)
193 PRK15331 chaperone protein Sic 46.7 55 0.0012 26.5 5.3 46 162-207 47-100 (165)
194 KOG1914 mRNA cleavage and poly 46.6 1.8E+02 0.0039 28.4 9.3 122 19-180 375-500 (656)
195 smart00299 CLH Clathrin heavy 46.5 99 0.0021 23.6 6.8 30 105-134 8-37 (140)
196 TIGR03504 FimV_Cterm FimV C-te 45.9 37 0.00081 20.8 3.3 26 110-135 5-30 (44)
197 smart00386 HAT HAT (Half-A-TPR 45.7 30 0.00065 18.4 2.8 25 166-190 1-25 (33)
198 cd00923 Cyt_c_Oxidase_Va Cytoc 44.7 67 0.0014 23.7 4.9 43 149-191 39-81 (103)
199 PRK10564 maltose regulon perip 44.1 41 0.00088 30.0 4.5 40 107-146 260-299 (303)
200 PRK10803 tol-pal system protei 43.0 1.6E+02 0.0035 25.7 8.2 95 78-185 152-250 (263)
201 PF04184 ST7: ST7 protein; In 42.8 1.6E+02 0.0035 28.4 8.4 86 92-192 250-337 (539)
202 PF07035 Mic1: Colon cancer-as 42.2 1.5E+02 0.0032 24.1 7.2 55 87-148 15-69 (167)
203 PF13281 DUF4071: Domain of un 42.1 1.7E+02 0.0036 27.2 8.3 60 86-148 161-226 (374)
204 KOG1128 Uncharacterized conser 41.3 1.7E+02 0.0037 29.5 8.5 73 108-203 402-482 (777)
205 KOG2376 Signal recognition par 41.0 1.8E+02 0.004 28.6 8.5 96 107-202 379-515 (652)
206 KOG1173 Anaphase-promoting com 40.1 1.4E+02 0.0031 29.1 7.7 71 105-189 456-526 (611)
207 PF09868 DUF2095: Uncharacteri 39.4 96 0.0021 23.5 5.2 45 157-209 66-110 (128)
208 PRK10866 outer membrane biogen 39.1 1.4E+02 0.0031 25.6 7.2 62 112-184 40-101 (243)
209 PF09613 HrpB1_HrpK: Bacterial 38.8 2.1E+02 0.0045 23.1 8.1 57 114-184 20-76 (160)
210 PF14689 SPOB_a: Sensor_kinase 38.3 52 0.0011 21.7 3.4 31 150-180 21-51 (62)
211 PF11846 DUF3366: Domain of un 37.6 39 0.00084 27.7 3.3 32 101-132 141-172 (193)
212 KOG1127 TPR repeat-containing 37.1 81 0.0018 33.0 5.8 102 77-184 493-628 (1238)
213 KOG1174 Anaphase-promoting com 36.4 3.8E+02 0.0083 25.4 11.8 88 103-192 367-477 (564)
214 KOG1538 Uncharacterized conser 36.1 1.9E+02 0.0041 29.0 7.9 25 255-279 825-849 (1081)
215 PF04840 Vps16_C: Vps16, C-ter 35.9 96 0.0021 28.0 5.8 73 72-174 211-284 (319)
216 PF13525 YfiO: Outer membrane 35.8 1.7E+02 0.0037 24.1 7.0 61 113-184 14-74 (203)
217 KOG1156 N-terminal acetyltrans 35.5 3.3E+02 0.0071 27.2 9.4 88 105-192 144-259 (700)
218 KOG0495 HAT repeat protein [RN 35.4 4E+02 0.0086 27.0 9.9 64 106-183 586-649 (913)
219 PF10300 DUF3808: Protein of u 35.1 3.3E+02 0.0072 26.0 9.6 87 106-207 231-334 (468)
220 PF11768 DUF3312: Protein of u 34.6 2.4E+02 0.0052 27.5 8.3 94 105-210 409-510 (545)
221 PF11846 DUF3366: Domain of un 34.1 88 0.0019 25.6 4.9 35 149-183 141-175 (193)
222 KOG2002 TPR-containing nuclear 33.6 3.3E+02 0.0071 28.6 9.4 64 153-216 647-718 (1018)
223 TIGR02561 HrpB1_HrpK type III 33.4 2.5E+02 0.0054 22.4 7.1 61 108-183 15-75 (153)
224 PF06368 Met_asp_mut_E: Methyl 33.3 2.5E+02 0.0053 26.6 7.9 64 193-264 152-218 (441)
225 PF11663 Toxin_YhaV: Toxin wit 32.9 28 0.0006 27.2 1.5 38 14-52 96-136 (140)
226 COG4235 Cytochrome c biogenesi 32.4 3.6E+02 0.0079 24.0 11.1 30 103-132 155-184 (287)
227 KOG2003 TPR repeat-containing 31.5 2.8E+02 0.0061 26.5 8.0 53 114-181 286-338 (840)
228 cd08819 CARD_MDA5_2 Caspase ac 30.5 2.1E+02 0.0045 20.6 6.0 63 86-173 22-87 (88)
229 KOG3617 WD40 and TPR repeat-co 29.6 1.1E+02 0.0024 31.5 5.3 201 24-269 814-1057(1416)
230 smart00804 TAP_C C-terminal do 29.4 22 0.00048 23.8 0.4 22 262-283 40-61 (63)
231 COG3629 DnrI DNA-binding trans 29.1 2.2E+02 0.0048 25.2 6.7 67 150-216 151-230 (280)
232 PLN02789 farnesyltranstransfer 28.6 3.7E+02 0.0079 24.2 8.3 141 27-192 36-182 (320)
233 PF09205 DUF1955: Domain of un 28.0 3.1E+02 0.0066 21.7 8.6 61 149-209 83-151 (161)
234 PF07079 DUF1347: Protein of u 28.0 2.1E+02 0.0045 27.4 6.5 43 102-144 126-172 (549)
235 PF07443 HARP: HepA-related pr 27.5 33 0.00071 22.3 0.9 28 86-116 12-39 (55)
236 PF13170 DUF4003: Protein of u 27.5 4.5E+02 0.0096 23.5 11.4 60 86-148 82-150 (297)
237 PRK15331 chaperone protein Sic 26.4 3.5E+02 0.0076 21.9 9.0 79 114-206 47-133 (165)
238 TIGR01503 MthylAspMut_E methyl 26.0 2.9E+02 0.0062 26.4 7.1 80 80-162 146-236 (480)
239 PF09205 DUF1955: Domain of un 26.0 3.3E+02 0.0073 21.5 8.1 65 105-183 87-151 (161)
240 PF10300 DUF3808: Protein of u 25.5 3.8E+02 0.0082 25.6 8.2 105 86-205 253-374 (468)
241 PF02284 COX5A: Cytochrome c o 25.0 1.3E+02 0.0029 22.3 3.8 58 86-147 30-87 (108)
242 KOG0548 Molecular co-chaperone 24.6 5.6E+02 0.012 24.9 8.8 81 112-206 366-454 (539)
243 PF02847 MA3: MA3 domain; Int 24.3 2.8E+02 0.0061 20.1 8.2 59 108-167 6-68 (113)
244 PF08311 Mad3_BUB1_I: Mad3/BUB 24.2 3.2E+02 0.007 20.7 6.3 45 121-177 80-124 (126)
245 COG1729 Uncharacterized protei 24.2 4.9E+02 0.011 22.8 9.4 90 106-207 144-244 (262)
246 PF03943 TAP_C: TAP C-terminal 24.1 29 0.00063 22.0 0.3 22 262-283 28-49 (51)
247 PF13762 MNE1: Mitochondrial s 23.9 1.3E+02 0.0028 23.9 3.9 44 105-148 80-124 (145)
248 KOG2053 Mitochondrial inherita 23.5 6E+02 0.013 26.5 9.2 71 103-188 76-146 (932)
249 COG4649 Uncharacterized protei 23.4 4.3E+02 0.0094 21.9 11.1 63 106-181 61-123 (221)
250 PF12688 TPR_5: Tetratrico pep 23.2 3.4E+02 0.0073 20.5 7.2 61 107-178 41-101 (120)
251 KOG1125 TPR repeat-containing 23.0 4.6E+02 0.01 25.7 8.0 90 109-203 358-489 (579)
252 COG4003 Uncharacterized protei 22.7 2.2E+02 0.0047 20.3 4.3 29 157-185 36-64 (98)
253 COG3898 Uncharacterized membra 22.5 6.6E+02 0.014 23.7 9.5 94 107-200 191-321 (531)
254 KOG0543 FKBP-type peptidyl-pro 22.5 4.7E+02 0.01 24.4 7.7 89 112-206 216-319 (397)
255 cd00245 Glm_e Coenzyme B12-dep 22.5 4.6E+02 0.01 24.8 7.8 84 80-166 103-197 (428)
256 PF14938 SNAP: Soluble NSF att 22.4 5.2E+02 0.011 22.5 8.4 71 106-183 157-227 (282)
257 PRK14720 transcript cleavage f 22.2 9.3E+02 0.02 25.4 10.5 62 105-181 117-178 (906)
258 KOG4570 Uncharacterized conser 22.0 99 0.0021 28.0 3.2 37 95-134 129-165 (418)
259 PF09477 Type_III_YscG: Bacter 21.6 3.6E+02 0.0078 20.3 6.8 29 149-179 68-96 (116)
260 KOG0548 Molecular co-chaperone 21.6 4.2E+02 0.009 25.8 7.4 79 113-192 11-110 (539)
261 KOG0547 Translocase of outer m 21.5 7.6E+02 0.016 24.0 10.9 100 107-206 363-490 (606)
262 KOG0495 HAT repeat protein [RN 21.3 8.7E+02 0.019 24.7 12.0 71 106-190 721-791 (913)
263 PF12793 SgrR_N: Sugar transpo 21.1 93 0.002 23.5 2.5 51 79-129 30-95 (115)
264 PF02607 B12-binding_2: B12 bi 21.0 1.5E+02 0.0032 20.1 3.4 33 115-147 12-44 (79)
265 PRK14956 DNA polymerase III su 20.6 3.9E+02 0.0084 25.8 7.1 66 115-182 211-278 (484)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=364.03 Aligned_cols=282 Identities=27% Similarity=0.443 Sum_probs=223.9
Q ss_pred ccCCCCeeehHHHHHhh---cccHHHHHHHHHHhHhcccCCCc--cccHHHHHhcCCCccCCceehhh----------hh
Q 044945 7 ILERNENVELSNGLAGC---NEFMDKANGITDRFEERAVSIGH--YADLDGISDQLPSSSGGRQVDIH----------FD 71 (296)
Q Consensus 7 ~~~~pd~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~~g~--~~~~~~~~~~m~~~~~~~~~~~~----------~~ 71 (296)
.++.||++|||+++..+ |+ .++|.++|++|.+.|+.++. +......+...+.++.+.++|.. ..
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~-~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGY-SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 35678999999977766 65 99999999999988876443 23334445555555555555544 34
Q ss_pred cccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 72 GGVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 72 ~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
++.++++|+|+|++ .++|++|.++|+ +|||+||.||+++|+.++|+++|++|.+.|++||.+||+++|.+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPRKNL-------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCCCCe-------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 57788999999999 999999988877 99999999999999999999999999999999999999999987
Q ss_pred -------------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 044945 149 -------------------------------------------------------GSTENVWLTLLSACRVHRNVELAEK 173 (296)
Q Consensus 149 -------------------------------------------------------~p~~~~~~~Li~~~~~~g~~~~A~~ 173 (296)
.||..+|++||++|+++|+++.|+.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 4555555555555555555555555
Q ss_pred HHHHHHhcCCCCcchhHHh--------hHHHHHHHHHH------------------------------------------
Q 044945 174 VADMILMIEPNNTGAYVIL--------INEALKDLLER------------------------------------------ 203 (296)
Q Consensus 174 ~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~------------------------------------------ 203 (296)
+++++.+.+|.+..+|+.| ++++|.+++++
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 5555555556666677776 34444444444
Q ss_pred -----HHhCCCcCCCccceeecchhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecccCccchhhHHHHHhhhhcceE
Q 044945 204 -----MEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLALVFGIISTPDGTTIRVIKNLPSLRGLRHGNKVVSKIVHREM 278 (296)
Q Consensus 204 -----M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~m~~r~~ 278 (296)
|++.|+.||+...+++++..+++..+..|+++++++||++..+.+++++|++++..|||||.|.|+++.+..|.|
T Consensus 596 ~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 675 (697)
T PLN03081 596 ELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREI 675 (697)
T ss_pred HHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEE
Confidence 455555555555556666677778889999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccchhccccccC
Q 044945 279 IVRDNRRFCRHFLLFRAC 296 (296)
Q Consensus 279 ~~~~~~~~~~~~~~~~~c 296 (296)
|+||.+|||||-++-++|
T Consensus 676 ~~rd~~rfh~f~~g~csc 693 (697)
T PLN03081 676 VVRDASRFHHFKLGKCSC 693 (697)
T ss_pred EEecCCccccCCCCcccc
Confidence 999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-42 Score=349.59 Aligned_cols=287 Identities=21% Similarity=0.233 Sum_probs=218.8
Q ss_pred ccCCCCeeehHHHHHhh---cccHHHHHHHHHHhHhcccCCCcc--ccHHHHHhcCCCccCCceehhh----------hh
Q 044945 7 ILERNENVELSNGLAGC---NEFMDKANGITDRFEERAVSIGHY--ADLDGISDQLPSSSGGRQVDIH----------FD 71 (296)
Q Consensus 7 ~~~~pd~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~~g~~--~~~~~~~~~m~~~~~~~~~~~~----------~~ 71 (296)
.|+.||++|||+++..+ |+ .++|.++|++|.+.|+.++.. ..+...+...+..+.+.++|.. ..
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~-~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGL-PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 35678999999877766 55 899999999999888753321 2222333333333333333332 23
Q ss_pred cccccccccccCCH---HHHHhhcccCCcccC------------------------------------------------
Q 044945 72 GGVDGLRPSRSGSV---RKVFEIMAVRDFLEY------------------------------------------------ 100 (296)
Q Consensus 72 ~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~------------------------------------------------ 100 (296)
++.++++|+|+|++ .++|++|.++|.++|
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 45556666666666 666666666655443
Q ss_pred --------------------------------------------CCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCc
Q 044945 101 --------------------------------------------CDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIK 136 (296)
Q Consensus 101 --------------------------------------------~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~ 136 (296)
.||.++||+||.+|+++|+.++|+++|++|.+.|++
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 345688999999999999999999999999999999
Q ss_pred cChhhhhhhhcc-----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh-
Q 044945 137 ARHAPFSRIMHA-----------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL- 192 (296)
Q Consensus 137 pd~~ty~~li~~-----------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l- 192 (296)
||.+||+++|.+ .||..+|++++++|++.|++++|++++++|. -.||..+|++|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl 664 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALL 664 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHH
Confidence 999999999988 6888888888888888888888888888873 12355555554
Q ss_pred -----------------------------------------hHHHHHHHHHHHHhCCCcCCCcccee-------------
Q 044945 193 -----------------------------------------INEALKDLLERMEQEGYVPDTKEVLL------------- 218 (296)
Q Consensus 193 -----------------------------------------~~~~a~~l~~~M~~~g~~p~~~t~~~------------- 218 (296)
+|++|.++.++|++.|+.+++...++
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d 744 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence 56777777777777777666443322
Q ss_pred ---------------------------------ecchhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecccCccchhh
Q 044945 219 ---------------------------------DVEEEQKKNILYYHGERLALVFGIISTPDGTTIRVIKNLPSLRGLRH 265 (296)
Q Consensus 219 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~k~g~~~~ 265 (296)
+....+++..+..|+|+++++||+++++.+++++|++++..|||||.
T Consensus 745 ~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~ 824 (857)
T PLN03077 745 ESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHN 824 (857)
T ss_pred CCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHH
Confidence 12334556678889999999999999999999999999999999999
Q ss_pred HHHHHhhhhcceEEEecCCccchhccccccC
Q 044945 266 GNKVVSKIVHREMIVRDNRRFCRHFLLFRAC 296 (296)
Q Consensus 266 A~~~f~~m~~r~~~~~~~~~~~~~~~~~~~c 296 (296)
|.|+++.+..|.||+||.+|||||-++.++|
T Consensus 825 ~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc 855 (857)
T PLN03077 825 TVKFISKIVRREISVRDTEQFHHFKDGECSC 855 (857)
T ss_pred HHHHHHHHhCeEEEEecCCcceeCCCCcccC
Confidence 9999999999999999999999999999999
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=306.37 Aligned_cols=271 Identities=16% Similarity=0.111 Sum_probs=214.5
Q ss_pred ccCCCCeeehHHHHHhh---cccHHHHHHHHHHhHhcccCCCc--cccHHHHHhcCCCccCCceehhh----------hh
Q 044945 7 ILERNENVELSNGLAGC---NEFMDKANGITDRFEERAVSIGH--YADLDGISDQLPSSSGGRQVDIH----------FD 71 (296)
Q Consensus 7 ~~~~pd~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~~g~--~~~~~~~~~~m~~~~~~~~~~~~----------~~ 71 (296)
.+++||++|||+++..+ |+ +++|.++|++|.+.|+.++. +......+........+.++|.. ..
T Consensus 183 ~m~~~~~~t~n~li~~~~~~g~-~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 183 EMPERNLASWGTIIGGLVDAGN-YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred cCCCCCeeeHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 35679999999987666 66 99999999999998775443 23344455556655556666554 24
Q ss_pred cccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 72 GGVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 72 ~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
++.++++|+|+|++ .++|++|+++|. ++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~-------vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTT-------VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57789999999999 999999998888 99999999999999999999999999999999999999999998
Q ss_pred ----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHH
Q 044945 149 ----------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALK 198 (296)
Q Consensus 149 ----------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~ 198 (296)
.||..+||+||++|+++|++++|+++|++|.+ +|.++||+| ..++|.
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHH
Confidence 89999999999999999999999999999975 599999999 689999
Q ss_pred HHHHHHHhCCCcCCCccceeecchhhhhhhhhhhhHHHHH---HHHhhcCCCCCeEEEEecccCccchhhHHHHHhhhhc
Q 044945 199 DLLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLAL---VFGIISTPDGTTIRVIKNLPSLRGLRHGNKVVSKIVH 275 (296)
Q Consensus 199 ~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~m~~ 275 (296)
++|++|.+.|+.||..||...+.++...+.+....+.+.. ..+. .+...+...+|+.|+++|++++|.++|++|+.
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~ 490 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-KPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence 9999999999999999998777665554433322221111 1222 23323333459999999999999999998863
Q ss_pred ceEEEecCCccchhcccc
Q 044945 276 REMIVRDNRRFCRHFLLF 293 (296)
Q Consensus 276 r~~~~~~~~~~~~~~~~~ 293 (296)
.|+...|..+++.+
T Consensus 491 ----~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 491 ----KPTVNMWAALLTAC 504 (697)
T ss_pred ----CCCHHHHHHHHHHH
Confidence 23444454444433
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-36 Score=303.41 Aligned_cols=259 Identities=19% Similarity=0.187 Sum_probs=211.6
Q ss_pred ccCCCCeeehHHHHHhh---cccHHHHHHHHHHhHhcccCCCc--cccHHHHHhcCCCccCCceehhh----------hh
Q 044945 7 ILERNENVELSNGLAGC---NEFMDKANGITDRFEERAVSIGH--YADLDGISDQLPSSSGGRQVDIH----------FD 71 (296)
Q Consensus 7 ~~~~pd~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~~g~--~~~~~~~~~~m~~~~~~~~~~~~----------~~ 71 (296)
+++.||+++||+++..+ |+ +++|.++|++|...|+.++. +..+...|...+....+.++|.. ..
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~-~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGY-FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 46789999999987766 65 99999999999998876543 34445556666666666777654 34
Q ss_pred cccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 72 GGVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 72 ~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
++.++++|+|+|++ .++|++|+++|. +|||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRRDC-------ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCCCCc-------chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 67889999999999 999999998888 99999999999999999999999999999999999999999987
Q ss_pred ----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHH
Q 044945 149 ----------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALK 198 (296)
Q Consensus 149 ----------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~ 198 (296)
.||..+||+||++|++.|++++|.++|++|.+ +|.++|+++ ..++|.
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHH
Confidence 79999999999999999999999999999964 589999999 689999
Q ss_pred HHHHHHHhCCCcCCCccceeecchhhhhhhhh----hhhHHHHHHHHhh-cCCCCCeEEEEecccCccchhhHHHHHhhh
Q 044945 199 DLLERMEQEGYVPDTKEVLLDVEEEQKKNILY----YHGERLALVFGII-STPDGTTIRVIKNLPSLRGLRHGNKVVSKI 273 (296)
Q Consensus 199 ~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~ii~~~~k~g~~~~A~~~f~~m 273 (296)
++|++|.+.|+.||..|+...+..+...+.+. .|.. ....|.. .....+.+ |++|+|+|++++|.++|++|
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~--~~~~g~~~~~~~~n~L--i~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL--AERKGLISYVVVANAL--IEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH--HHHhCCCcchHHHHHH--HHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999977665544333222 2222 1122221 11122334 89999999999999999999
Q ss_pred hcceEEE
Q 044945 274 VHREMIV 280 (296)
Q Consensus 274 ~~r~~~~ 280 (296)
.+++++.
T Consensus 451 ~~~d~vs 457 (857)
T PLN03077 451 PEKDVIS 457 (857)
T ss_pred CCCCeee
Confidence 9887653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-36 Score=305.54 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=209.6
Q ss_pred cCCCCeeehHHHHHhh---cccHHHHHHHHHHhHhcccC---------------CCccccHHHHHhcCCCccCCceehhh
Q 044945 8 LERNENVELSNGLAGC---NEFMDKANGITDRFEERAVS---------------IGHYADLDGISDQLPSSSGGRQVDIH 69 (296)
Q Consensus 8 ~~~pd~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~---------------~g~~~~~~~~~~~m~~~~~~~~~~~~ 69 (296)
++.||.+|||+++..| |+ +++|.++|++|.+.|+. .|.+..|..++..|...+..+ +.
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~-~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P---dv 507 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQD-IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA---NV 507 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC---CH
Confidence 4458999999877776 55 89999999999988875 556677777888877655544 45
Q ss_pred hhcccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHH--cCCccChhhhhh
Q 044945 70 FDGGVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLM--AKIKARHAPFSR 144 (296)
Q Consensus 70 ~~~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~--~g~~pd~~ty~~ 144 (296)
++++.+|++|++.|++ .++|++|.+.++ .||.+|||+||.+|++.|++++|+++|++|.+ .|+.||.+||++
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv---~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNV---KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 6788888888888888 888888888888 88888888888888888888888888888876 678888888888
Q ss_pred hhcc----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchhHHh--------h
Q 044945 145 IMHA----------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIE-PNNTGAYVIL--------I 193 (296)
Q Consensus 145 li~~----------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~y~~l--------~ 193 (296)
||.+ .|+..+||+||++|++.|++++|.++|++|.+.+ .||..+|+.+ .
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 8877 7788888888888888888888888888888776 4688888888 5
Q ss_pred HHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhhhhHHHHHHHHh-hcCCCCCeEEEEecccCccchhhHHHHHhh
Q 044945 194 NEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLALVFGI-ISTPDGTTIRVIKNLPSLRGLRHGNKVVSK 272 (296)
Q Consensus 194 ~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~ 272 (296)
.++|.++|++|.+.|+.||..++...+..+.+.+.+......+...... ..+...+...+|++|++.|++++|.++|++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7888888888888888888888877666655544333222211111110 122222222348888888888888888888
Q ss_pred hhcceEEEecCCccchhccccc
Q 044945 273 IVHREMIVRDNRRFCRHFLLFR 294 (296)
Q Consensus 273 m~~r~~~~~~~~~~~~~~~~~~ 294 (296)
|.+.|+. ||..+|...++.+.
T Consensus 745 M~~~Gi~-Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 745 MKRLGLC-PNTITYSILLVASE 765 (1060)
T ss_pred HHHcCCC-CCHHHHHHHHHHHH
Confidence 8877765 46677776666554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-35 Score=297.53 Aligned_cols=278 Identities=13% Similarity=0.101 Sum_probs=213.7
Q ss_pred CCCeeehHHHHHhh---cccHHHHHHHHHHhHhcccC----------------CCccccHHHHHhcCCC-----------
Q 044945 10 RNENVELSNGLAGC---NEFMDKANGITDRFEERAVS----------------IGHYADLDGISDQLPS----------- 59 (296)
Q Consensus 10 ~pd~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~----------------~g~~~~~~~~~~~m~~----------- 59 (296)
.+|.-.|..+|.++ |+ +++|.++|++|.++|+. .|...+|..++..|..
T Consensus 367 ~~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566677766666 66 88888888888888753 2334444444444433
Q ss_pred --------------------ccCCceehhhhhcccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhc
Q 044945 60 --------------------SSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQ 116 (296)
Q Consensus 60 --------------------~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~ 116 (296)
.+..+ +.+.++.+|++|+|+|++ .++|++|.+.++ .||.+|||+||.+|++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~p---D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv---~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKA---DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV---EANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHH
Confidence 22211 334677888999999999 889999999988 9999999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCccChhhhhhhhcc------------------------CCCHHHHHHHHHHHHhcCCHHHHH
Q 044945 117 NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA------------------------GSTENVWLTLLSACRVHRNVELAE 172 (296)
Q Consensus 117 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~------------------------~p~~~~~~~Li~~~~~~g~~~~A~ 172 (296)
.|++++|+++|++|.+.|+.||.+||++||.+ .||.++||+||++|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999988 689999999999999999999999
Q ss_pred HHHHHHHhcC-CCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhhhhHHHHHHHHh-
Q 044945 173 KVADMILMIE-PNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLALVFGI- 242 (296)
Q Consensus 173 ~~~~~m~~~~-~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (296)
++|++|.+.+ +++..+|+.+ ..++|.++|++|.+.|+.||..||...+..+.+.+.+....+.+......
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999887 4688999999 68999999999999999999999977776655544333222211111111
Q ss_pred hcCCCCCeEEEEecccCccchhhHHHHHhhhhcceEEEecCCccchhcccccc
Q 044945 243 ISTPDGTTIRVIKNLPSLRGLRHGNKVVSKIVHREMIVRDNRRFCRHFLLFRA 295 (296)
Q Consensus 243 ~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~m~~r~~~~~~~~~~~~~~~~~~~ 295 (296)
..+...+...+|++|+++|++++|.++|++|.+.|+. ||...|+.++.+|.+
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~-PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNALITALCE 731 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH
Confidence 1122222223499999999999999999999988855 688888888887754
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=8.9e-16 Score=99.68 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=40.6
Q ss_pred CceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhc
Q 044945 102 DYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMH 147 (296)
Q Consensus 102 p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 147 (296)
||+++||+||++|++.|++++|+++|++|.+.|++||..||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8889999999999999999999999999999999766655555554
No 8
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.17 E-value=5.3e-11 Score=90.89 Aligned_cols=85 Identities=52% Similarity=0.798 Sum_probs=72.9
Q ss_pred HHHHHHHhCCCcCCCccceeecchhh--------hhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecc-cCccchhhHHHH
Q 044945 199 DLLERMEQEGYVPDTKEVLLDVEEEQ--------KKNILYYHGERLALVFGIISTPDGTTIRVIKNL-PSLRGLRHGNKV 269 (296)
Q Consensus 199 ~l~~~M~~~g~~p~~~t~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~k~g~~~~A~~~ 269 (296)
.+..+|...|+.|+.....+.+.... ++..+..|+|++++++|++.. ++++++ ..|+||+.+.|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~ 95 (116)
T PF14432_consen 22 ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKF 95 (116)
T ss_pred HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eEEecCCccchHHHHHHHH
Confidence 56778888999998777766554433 356778899999999999765 568888 999999999999
Q ss_pred HhhhhcceEEEecCCccchh
Q 044945 270 VSKIVHREMIVRDNRRFCRH 289 (296)
Q Consensus 270 f~~m~~r~~~~~~~~~~~~~ 289 (296)
++.+..|.|++||+++||+|
T Consensus 96 iS~~~~ReIiVRD~~rfHhF 115 (116)
T PF14432_consen 96 ISKITGREIIVRDSNRFHHF 115 (116)
T ss_pred HHHHHCeEEEEeCCCeeeeC
Confidence 99999999999999999998
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.16 E-value=2.3e-11 Score=71.93 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=30.2
Q ss_pred CCceeeHHHHHHHHhccCChhHHHHHHHHHH
Q 044945 101 CDYAISRNSITAGCGQNGPFDEGLKFFGQML 131 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~ 131 (296)
.||.+|||+||++||+.|++++|+++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 9999999999999999999999999999994
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.1e-09 Score=98.67 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=125.3
Q ss_pred eeehHHHHHhh-cccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhh----h---hcccccccccccCC
Q 044945 13 NVELSNGLAGC-NEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIH----F---DGGVDGLRPSRSGS 84 (296)
Q Consensus 13 ~vs~n~~~~~~-~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~----~---~~~~~i~~y~k~g~ 84 (296)
+++=|+++.-. .+.+.+|.-+|+.|+..|+..... --.+++....-......+... + .++-....--|.|.
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 56677765444 233999999999999998752111 001111111111000000000 0 00000112235666
Q ss_pred H-HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc---------------
Q 044945 85 V-RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA--------------- 148 (296)
Q Consensus 85 ~-~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~--------------- 148 (296)
+ .-+|+..++.+ -||.+||.|+|+--..+.|.+++++-.+...+.+..+||.+|.+
T Consensus 195 vAdL~~E~~PKT~--------et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMis 266 (625)
T KOG4422|consen 195 VADLLFETLPKTD--------ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMIS 266 (625)
T ss_pred HHHHHHhhcCCCc--------hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHH
Confidence 6 54454444433 79999999999999999999999999999999999999999998
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHhhHHHHHHHHHHHHhCCCcCCCccceeecchhhh
Q 044945 149 ---GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVILINEALKDLLERMEQEGYVPDTKEVLLDVEEEQK 225 (296)
Q Consensus 149 ---~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~ 225 (296)
.||..|+|+++.+.++.|+++.|.+.+- +++.+|++-|+.|...+|.+.+...++
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aal----------------------qil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAAL----------------------QILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHH----------------------HHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 8999999999999999999999987544 567899999999998888666554444
Q ss_pred hh
Q 044945 226 KN 227 (296)
Q Consensus 226 ~~ 227 (296)
+.
T Consensus 325 e~ 326 (625)
T KOG4422|consen 325 ES 326 (625)
T ss_pred cC
Confidence 43
No 11
>PF13041 PPR_2: PPR repeat family
Probab=99.10 E-value=1.6e-10 Score=74.73 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchhHHh
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIE-PNNTGAYVIL 192 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~y~~l 192 (296)
||+++||+||++|++.|++++|.++|++|.+.+ .||..||+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 899999999999999999999999999998877 4688888876
No 12
>PF12854 PPR_1: PPR repeat
Probab=98.95 E-value=8.1e-10 Score=65.22 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
.||.+|||+||++||+.|++++|.++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999984
No 13
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.93 E-value=1.4e-09 Score=64.21 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=33.4
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccCh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARH 139 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 139 (296)
+|||+||++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999999999999984
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.91 E-value=9e-09 Score=94.92 Aligned_cols=249 Identities=10% Similarity=-0.012 Sum_probs=149.4
Q ss_pred cccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---H
Q 044945 24 NEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---R 86 (296)
Q Consensus 24 ~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~ 86 (296)
|. +++|.+.|.++.+.+.. .|.++.+..++..+..............+..+...|.+.|+. .
T Consensus 49 ~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 49 EQ-PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred CC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44 88888888888876532 445556666555443321110000011233446788899999 8
Q ss_pred HHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccCh---h-hhhhhhcc--------------
Q 044945 87 KVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARH---A-PFSRIMHA-------------- 148 (296)
Q Consensus 87 ~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~-ty~~li~~-------------- 148 (296)
.+|+++.+.+ .++..+++.++..|.+.|+.++|.+.|+.+.+.+-.++. . .|..+...
T Consensus 128 ~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 128 ELFLQLVDEG----DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHcCC----cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8899887643 234578999999999999999999999999886643322 1 22222211
Q ss_pred ------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cchhHHh--------hHHHHHHHHHHHHhCCCcCC
Q 044945 149 ------GS-TENVWLTLLSACRVHRNVELAEKVADMILMIEPNN-TGAYVIL--------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 149 ------~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~y~~l--------~~~~a~~l~~~M~~~g~~p~ 212 (296)
.| +...+..+...|.+.|++++|.+.|+++.+..|.+ ..++..+ ..++|...++++.+. .|+
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 281 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPG 281 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 34 45678888899999999999999999998766543 2334444 678999999998876 466
Q ss_pred CccceeecchhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecccC---ccchhhHHHHHhhhhcceEEE
Q 044945 213 TKEVLLDVEEEQKKNILYYHGERLALVFGIISTPDGTTIRVIKNLPS---LRGLRHGNKVVSKIVHREMIV 280 (296)
Q Consensus 213 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~k---~g~~~~A~~~f~~m~~r~~~~ 280 (296)
...+..........+........+...... .+...+...++..+.. .|+..+|..+|++|.++++.+
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 433321111111111111111111111111 1111111111333333 568999999999999777654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.78 E-value=5.1e-08 Score=89.91 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccce
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVL 217 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~ 217 (296)
.+++.+..+|++.|++++|...++++.+..|.+ ..+..+ ..++|..+++++.+. .|+..++.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 456667777777777777777777776655432 223333 456677777666554 46654443
No 16
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.69 E-value=2.2e-08 Score=58.86 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=32.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKA 137 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~p 137 (296)
.|||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 799999999999999999999999999999998
No 17
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.67 E-value=2.4e-08 Score=57.30 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=29.7
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKI 135 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~ 135 (296)
+|||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 6899999999999999999999999999886
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.65 E-value=1.9e-07 Score=93.93 Aligned_cols=176 Identities=11% Similarity=-0.038 Sum_probs=89.6
Q ss_pred hhcccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH--
Q 044945 22 GCNEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV-- 85 (296)
Q Consensus 22 ~~~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~-- 85 (296)
+.|+ .++|.++|+++.+.... .|.++.+...+..+...... ....+..+...|.+.|+.
T Consensus 579 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 579 GKGQ-LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD----SALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HCCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHH
Confidence 3354 77777777766554321 34444455444433221110 001112233555566666
Q ss_pred -HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc----------------
Q 044945 86 -RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA---------------- 148 (296)
Q Consensus 86 -~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~---------------- 148 (296)
...|+++.+.+- .+..+|+.+...+.+.|+.++|.++++.+.+.+. ++..++..+...
T Consensus 654 A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 654 AITSLKRALELKP----DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443221 1235566666666666666666666666655432 233333322221
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 149 ----GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 149 ----~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.|+..++..+...|.+.|++++|...++.+.+..|.+...+..+ ..++|...|+++.+.
T Consensus 729 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 729 ALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 45555556666666666666666666666666555555444444 456666666666554
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.63 E-value=2.8e-07 Score=92.72 Aligned_cols=128 Identities=11% Similarity=0.063 Sum_probs=83.2
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc----
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA---- 148 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~---- 148 (296)
...|.+.|+. ..+++++.+.. ..+..+|..+...|.+.|+.++|.+.|+++.+.. +.+...+..+...
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA----PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3566667777 66666665432 2334677777888888888888888888776643 1123333333222
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHH
Q 044945 149 -----------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLER 203 (296)
Q Consensus 149 -----------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~ 203 (296)
+.+..+|..+...+.+.|++++|..+++.+.+..|.+...+..+ .+++|.+.+.+
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33567777788888888888888888888777666555555544 57778788877
Q ss_pred HHhCC
Q 044945 204 MEQEG 208 (296)
Q Consensus 204 M~~~g 208 (296)
+...+
T Consensus 729 ~~~~~ 733 (899)
T TIGR02917 729 ALKRA 733 (899)
T ss_pred HHhhC
Confidence 77654
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.1e-06 Score=79.63 Aligned_cols=107 Identities=11% Similarity=0.137 Sum_probs=78.5
Q ss_pred CeeehHHHH---HhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhccccc--ccccccCCHH
Q 044945 12 ENVELSNGL---AGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDG--LRPSRSGSVR 86 (296)
Q Consensus 12 d~vs~n~~~---~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i--~~y~k~g~~~ 86 (296)
..-||.++| ||+.. .+.|.+++.+-+++-. .+. .. .+|-+| ..|.+- .
T Consensus 206 T~et~s~mI~Gl~K~~~-~ERA~~L~kE~~~~k~---kv~-~~-------------------aFN~lI~~~S~~~~---K 258 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSS-LERARELYKEHRAAKG---KVY-RE-------------------AFNGLIGASSYSVG---K 258 (625)
T ss_pred CchhHHHHHHHHHHHHh-HHHHHHHHHHHHHhhh---eee-HH-------------------hhhhhhhHHHhhcc---H
Confidence 345677765 45565 8899999988776432 110 00 111111 222222 6
Q ss_pred HHHhhcccCCcccCCCceeeHHHHHHHHhccCChhH----HHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 87 KVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDE----GLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 87 ~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~----A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
++..+|....+ +||..|+|+++.+.++.|+++. |++++.||++-|++|...+|--+|..
T Consensus 259 ~Lv~EMisqkm---~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~ 321 (625)
T KOG4422|consen 259 KLVAEMISQKM---TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKN 321 (625)
T ss_pred HHHHHHHHhhc---CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 88899999999 9999999999999999998874 57888999999999999999998877
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.31 E-value=2.7e-06 Score=83.00 Aligned_cols=127 Identities=13% Similarity=0.189 Sum_probs=97.3
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-----------------
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA----------------- 148 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~----------------- 148 (296)
..++-.|...|+ .||-+||-.+|.-||..|+++-|- +|.-|+.+....+...|+.++.+
T Consensus 10 tnfla~~e~~gi---~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDt 85 (1088)
T KOG4318|consen 10 TNFLALHEISGI---LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADT 85 (1088)
T ss_pred chHHHHHHHhcC---CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhH
Confidence 567777888888 898899999999999999998888 88888765555555555555544
Q ss_pred --------------------------------------------------------------------------------
Q 044945 149 -------------------------------------------------------------------------------- 148 (296)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (296)
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence
Q ss_pred -----------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcchhHHh
Q 044945 149 -----------------------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN-NTGAYVIL 192 (296)
Q Consensus 149 -----------------------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~y~~l 192 (296)
.|++.+|.++++.-.-.|+++.|..++.+|.+.+-+ +...|.-|
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 488889999999989999999999999999888743 44443333
Q ss_pred -----hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 193 -----INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 193 -----~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
...-++.++.-|++.|+.|+..|+
T Consensus 246 l~g~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 246 LLGINAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred hhcCccchHHHHHHHHHHHhcCCCCcchh
Confidence 345556677888999999998877
No 22
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.17 E-value=1.7e-06 Score=49.40 Aligned_cols=30 Identities=20% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+|||+||++|++.|++++|.++|++|.+.+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 489999999999999999999999998753
No 23
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=3.7e-06 Score=49.17 Aligned_cols=30 Identities=20% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
++||++|++|++.|++++|.++|++|.+.+
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 379999999999999999999988887654
No 24
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.3e-05 Score=45.64 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 152 ENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 152 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+.+||++|++|++.|+++.|..+|++|.+.+
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999999999988754
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.38 E-value=0.0013 Score=65.37 Aligned_cols=178 Identities=12% Similarity=-0.029 Sum_probs=97.8
Q ss_pred cccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---H
Q 044945 24 NEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---R 86 (296)
Q Consensus 24 ~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~ 86 (296)
|+ .++|.+.|+++.+.... .|..+.|...+...-...... .-.+..+...|...|+. .
T Consensus 90 g~-~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~----~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 90 SQ-PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN----SQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred CC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCChHHHH
Confidence 55 88888888887765432 334444444443332221110 00111223556666776 5
Q ss_pred HHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhc----c--------------
Q 044945 87 KVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMH----A-------------- 148 (296)
Q Consensus 87 ~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~----~-------------- 148 (296)
..++.+...+- .+. ..|..+ ..+.+.|+.++|.+.++.+.+..-.++..++..+.. .
T Consensus 165 ~~~~~~~~~~P---~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 165 SLARTQAQEVP---PRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHhCC---CCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555433221 111 122222 336677777777777777665432222222221111 1
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 149 ---GSTENVWLTLLSACRVHRNVEL----AEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 149 ---~p~~~~~~~Li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
+.+...+..|-..|...|+.++ |...|++..+..|.+...+..+ ..++|...+++..+. .|+.
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~ 317 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDL 317 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 3356677777788888888875 7888888887777666666555 567888887776654 4553
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.87 E-value=0.0016 Score=57.42 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=72.1
Q ss_pred CceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 102 DYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 102 p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
++...+..++..|-+.|+.+++.+++++.....-. .++...|..+-..+.+.|+.++|.+.+++..+.
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA------------PDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34466788899999999999999999997652211 357788888888999999999999999999998
Q ss_pred CCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecch-----hhhhhhhhhhhHHHHHHHHhhcCCCC
Q 044945 182 EPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEE-----EQKKNILYYHGERLALVFGIISTPDG 248 (296)
Q Consensus 182 ~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (296)
.|.|......+ ..+++..++....+.. |+...++..++. +...+.+...... ... .+.+.
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~----~~~-~p~d~ 248 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKA----LKL-NPDDP 248 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH----HHH-STT-H
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccc----ccc-ccccc
Confidence 88776555544 5677777777776654 443333322211 1111111111111 000 11111
Q ss_pred Ce-EEEEecccCccchhhHHHHHhhh
Q 044945 249 TT-IRVIKNLPSLRGLRHGNKVVSKI 273 (296)
Q Consensus 249 ~~-~~ii~~~~k~g~~~~A~~~f~~m 273 (296)
.. ...-+.|.+.|+.++|..+..+.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 10 01145588899999998887654
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.86 E-value=0.04 Score=54.76 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 152 ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 152 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
...+..+-..+.+.|++++|...+++..+..|.+...+..+ .+++|...++++.+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444443333333 34455555544443
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.79 E-value=0.056 Score=44.83 Aligned_cols=143 Identities=16% Similarity=0.143 Sum_probs=95.9
Q ss_pred cccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCCcccC
Q 044945 24 NEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDFLEY 100 (296)
Q Consensus 24 ~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~ 100 (296)
|+ .++|.+.|++..+.... .. ..+..+...|.+.|+. .+.|++..+.+-
T Consensus 45 ~~-~~~A~~~~~~~l~~~p~--~~----------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--- 96 (234)
T TIGR02521 45 GD-LEVAKENLDKALEHDPD--DY----------------------LAYLALALYYQQLGELEKAEDSFRRALTLNP--- 96 (234)
T ss_pred CC-HHHHHHHHHHHHHhCcc--cH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---
Confidence 55 88898888887653211 00 0111123456677777 566665544321
Q ss_pred CCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 101 CDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.+...|..+...|.+.|+.++|.+.|.+....... ..+...+..+-..|.+.|++++|...+++..+
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 97 -NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred -CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22356778888899999999999999998764211 12334566677788899999999999999887
Q ss_pred cCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 181 IEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 181 ~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
..|.+...|..+ ..++|...+++..+.
T Consensus 164 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 164 IDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 766665555555 678888888887766
No 29
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.77 E-value=0.0053 Score=46.14 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=25.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCC-ccChhhhhhhhcc
Q 044945 108 NSITAGCGQNGPFDEGLKFFGQMLMAKI-KARHAPFSRIMHA 148 (296)
Q Consensus 108 n~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~li~~ 148 (296)
...|..+...|+......+|+..++.|+ .|+..+|+.++.+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~S 70 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKS 70 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 3455555556666666666666666666 5555555555555
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.69 E-value=0.022 Score=56.11 Aligned_cols=113 Identities=7% Similarity=-0.102 Sum_probs=74.7
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|...|+. ...|++..+.+- .+...|..+-..|...|+.++|.+.|++-.+.. +.+..
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------------P~~~~ 434 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLNS----EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------------PDFIF 434 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------ccCHH
Confidence 345556666 555554433211 122556666677777777777777777665532 23456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.|..+-..|.+.|+.++|...|++..+..|.+...|+.+ .+++|.+.|++-.+.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 677777888889999999999998887777666666665 678888888776554
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.68 E-value=0.015 Score=48.38 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=68.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+...|.+.|+.++|.+.|++..+.. | .+...+..+-..|...|++++|...+++..+..|.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--P------------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 567888899999999999999999987642 2 24567777788888888888888888888777665
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...+..+ ..++|.+.+.+..+.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55444444 578888888877764
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.58 E-value=0.01 Score=52.31 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=82.8
Q ss_pred ccccccccCCH---HHHHhhccc-CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCC
Q 044945 75 DGLRPSRSGSV---RKVFEIMAV-RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGS 150 (296)
Q Consensus 75 ~i~~y~k~g~~---~~~f~~M~~-~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p 150 (296)
.+..|-+.|+. .+++++... ... .++...|..+-..+-+.|+.++|++.+++-.+.. |
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---------------P 177 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAA---PDSARFWLALAEIYEQLGDPDKALRDYRKALELD---------------P 177 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------------T
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------C
Confidence 34567777887 777777553 223 4566788889999999999999999999987753 4
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 151 -TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 151 -~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
|....+.++..+...|+.+++..+++...+..+.|...|..+ ..++|...+++... ..|+..++
T Consensus 178 ~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~ 250 (280)
T PF13429_consen 178 DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLW 250 (280)
T ss_dssp T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHH
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccccc
Confidence 467788888888888888888888888877655555555544 67888888887654 34543333
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.49 E-value=0.082 Score=53.56 Aligned_cols=176 Identities=8% Similarity=-0.059 Sum_probs=107.1
Q ss_pred hhcccHHHHHHHHHHhHhccc--C-------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH-
Q 044945 22 GCNEFMDKANGITDRFEERAV--S-------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV- 85 (296)
Q Consensus 22 ~~~~~~~~A~~~f~~M~~~~~--~-------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~- 85 (296)
..++ .++|+..|+++.+.+- + .|..+.|...+..+.................+..+|.+.|+.
T Consensus 249 ~~g~-~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDR-YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred Hhhh-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 3365 8999999999988652 1 334455555544432211100000000011112355677777
Q ss_pred --HHHHhhcccCC--------cccCCCce---eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH
Q 044945 86 --RKVFEIMAVRD--------FLEYCDYA---ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE 152 (296)
Q Consensus 86 --~~~f~~M~~~~--------~~~~~p~~---~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~ 152 (296)
..+++.+.+.. ...-.|+. -.+..+...+...|+.++|+++++++.... +.+.
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--------------P~n~ 393 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--------------PGNQ 393 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCH
Confidence 56666665432 10112332 134456667778888888888888876642 2456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCc
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTK 214 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~ 214 (296)
..+..+...+.+.|+.++|+..+++..+..|.+...+... .+++|+.+++++.+. .|+..
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 7888889999999999999999999988887764433333 788888888888763 55533
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=96.41 E-value=0.0031 Score=62.38 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=54.7
Q ss_pred CCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-------------------CCCHHHHHHHHHH
Q 044945 101 CDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-------------------GSTENVWLTLLSA 161 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-------------------~p~~~~~~~Li~~ 161 (296)
.||..+|.++++.=.-+|+++-|..++.+|+++|++.+..-|..|+-+ .|+..|+.--+-.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 388899999999999999999999999999999998888877777666 6777777665555
Q ss_pred HHhcCC
Q 044945 162 CRVHRN 167 (296)
Q Consensus 162 ~~~~g~ 167 (296)
+.+.|.
T Consensus 281 ~l~N~~ 286 (1088)
T KOG4318|consen 281 QLSNGQ 286 (1088)
T ss_pred hhcchh
Confidence 555443
No 35
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.40 E-value=0.015 Score=54.27 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=64.7
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP- 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~- 183 (296)
-|..++|..|-+.|..++++++++.=...|+ .||..|+|.||+.+.+.|++..|.+++..|...+.
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-------------F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~ 170 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGI-------------FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEF 170 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhccc-------------CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhcc
Confidence 4556999999999999999999999999999 78999999999999999999999999999987653
Q ss_pred CCcchhHHh
Q 044945 184 NNTGAYVIL 192 (296)
Q Consensus 184 ~~~~~y~~l 192 (296)
.+..|+.+.
T Consensus 171 ~~~~t~~L~ 179 (429)
T PF10037_consen 171 DNPSTQALA 179 (429)
T ss_pred CCchHHHHH
Confidence 455555443
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.26 E-value=0.081 Score=41.81 Aligned_cols=105 Identities=9% Similarity=0.045 Sum_probs=75.0
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH 165 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~ 165 (296)
+.+|++-.+. .|+ .+..+-..+.+.|++++|.+.|+...... +.+...|..+=..+.+.
T Consensus 13 ~~~~~~al~~-----~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLSV-----DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ--------------PWSWRAHIALAGTWMML 71 (144)
T ss_pred HHHHHHHHHc-----CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHH
Confidence 5555554443 343 25556777888999999999998876542 25677788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 166 RNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
|++++|...|+...+..|.+...+..+ ..++|...|.+-.+. .|+.
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 999999999998888877777666655 667787777765543 4543
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.0088 Score=57.36 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=74.5
Q ss_pred HHHHhccCChhHHHHHHHHHHHcC--CccChhhhhhhhcc------------------CCCHHHHHHHHHHHHhcCCHHH
Q 044945 111 TAGCGQNGPFDEGLKFFGQMLMAK--IKARHAPFSRIMHA------------------GSTENVWLTLLSACRVHRNVEL 170 (296)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~ty~~li~~------------------~p~~~~~~~Li~~~~~~g~~~~ 170 (296)
=.+|...++.++|+++|+...+.. ..-+..+|++.+=- +-...+|.++=+.|+-.++.+.
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~ 439 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDT 439 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHH
Confidence 367888888999999999987732 22366778877644 4456899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHH
Q 044945 171 AEKVADMILMIEPNNTGAYVIL--------INEALKDLLE 202 (296)
Q Consensus 171 A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~ 202 (296)
|.+.|++-...+|..+.+|+++ .+|.|.+-|+
T Consensus 440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 9999999999999999999999 4566666554
No 38
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.21 E-value=0.012 Score=39.74 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=47.9
Q ss_pred hccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 115 GQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 115 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
.+.|++++|+++|++..... +-|...+-.+...|.+.|++++|..+++.+....|.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hhccCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 46799999999999997753 23777888899999999999999999999988776543
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.17 E-value=0.11 Score=35.71 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
|..+...+.+.|+.++|.+.|++..+.. | .+...+..+-..|...|++++|...|+...+..+.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--P------------DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--C------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 5567778888999999999999987642 2 2336677788888899999999999999887766655
Q ss_pred chhHHh--------hHHHHHHHHHHHHh
Q 044945 187 GAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 187 ~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.++..+ ..++|...+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 444444 45666666655543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.15 Score=47.43 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=64.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc---------------------CCCHHHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA---------------------GSTENVWLTLLSACR 163 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~---------------------~p~~~~~~~Li~~~~ 163 (296)
..|+.|=+-|..-.....|.+-++.-++-. +-|--.|-.|=.+ +-|...|.+|=+.|.
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE 443 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 456666666666666666666666554311 1132222222222 558899999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHH
Q 044945 164 VHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERME 205 (296)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~ 205 (296)
+-+++++|.+.|......+-.+...|.-| ..++|.+.++.-.
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999877654444556655 4566656555443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.04 E-value=0.097 Score=48.75 Aligned_cols=235 Identities=9% Similarity=0.004 Sum_probs=131.5
Q ss_pred cHHHHHHHHHHhHhcc-cC-------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHH
Q 044945 26 FMDKANGITDRFEERA-VS-------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKV 88 (296)
Q Consensus 26 ~~~~A~~~f~~M~~~~-~~-------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~ 88 (296)
++++|.+....-.+.. .+ .|....+..++..+........+...+ ..-..+...|+. ...
T Consensus 99 d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l---~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEI---TRVRIQLARNENHAARHG 175 (398)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHH---HHHHHHHHCCCHHHHHHH
Confidence 4777777776655532 11 444555555555443322211111000 112456677888 777
Q ss_pred HhhcccCCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccCh-------hhhhhhhcc------------
Q 044945 89 FEIMAVRDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARH-------APFSRIMHA------------ 148 (296)
Q Consensus 89 f~~M~~~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~ty~~li~~------------ 148 (296)
++++.+.+ | +......+...|.+.|++++|.+++..+.+.+..++. .+|..++..
T Consensus 176 l~~~~~~~-----P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 176 VDKLLEVA-----PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHhcC-----CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77776542 3 2356888899999999999999999999987765322 233222221
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hhHHh---hHHHHHHHHHHHHhCCCcCCC
Q 044945 149 ---------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG---AYVIL---INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 149 ---------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~y~~l---~~~~a~~l~~~M~~~g~~p~~ 213 (296)
+.+.....++...+.+.|+.++|.+++++..+. +++.. .|.-+ ..+++.+..+...+. .||.
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~ 327 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDT 327 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCC
Confidence 346778888999999999999999999988874 33432 23333 556666767666643 5665
Q ss_pred ccceeecchhhhhhh-hhhhhHHHHHHHHhhcCCCCCeEEEEecccCccchhhHHHHHhh
Q 044945 214 KEVLLDVEEEQKKNI-LYYHGERLALVFGIISTPDGTTIRVIKNLPSLRGLRHGNKVVSK 272 (296)
Q Consensus 214 ~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~ 272 (296)
.......+....... .....+.+...... .+.....+.+-..+.+.|+.++|...+++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 544322222111111 11111111111111 11111111224557788888888777763
No 42
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=95.97 E-value=0.012 Score=44.22 Aligned_cols=69 Identities=7% Similarity=0.108 Sum_probs=54.0
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCC--------hhHHHHHHHHHHHcCCccChhhhhhh
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGP--------FDEGLKFFGQMLMAKIKARHAPFSRI 145 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~--------~~~A~~l~~~M~~~g~~pd~~ty~~l 145 (296)
.-+...+++ -.+|+..++.|+. .|++.+||.++.+-++... +-+.+.++++|...+++|+..||+++
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~--lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGIT--LPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 334444777 8899999988862 5888999999999887654 34778999999999998877777777
Q ss_pred hc
Q 044945 146 MH 147 (296)
Q Consensus 146 i~ 147 (296)
+.
T Consensus 111 l~ 112 (120)
T PF08579_consen 111 LG 112 (120)
T ss_pred HH
Confidence 64
No 43
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.80 E-value=0.039 Score=46.45 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCC-CCcchhHHh------------------------hHHHHH
Q 044945 149 GSTENVWLTLLSACRVH-----RNVELAEKVADMILMIEP-NNTGAYVIL------------------------INEALK 198 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~-----g~~~~A~~~~~~m~~~~~-~~~~~y~~l------------------------~~~~a~ 198 (296)
..|..+|..+|+.|.+. |.++=-...+..|.+-+. .|..+|+.| ..+.|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45666777777777644 677777777788877774 577888877 568899
Q ss_pred HHHHHHHhCCCcCCCccceeecch
Q 044945 199 DLLERMEQEGYVPDTKEVLLDVEE 222 (296)
Q Consensus 199 ~l~~~M~~~g~~p~~~t~~~~~~~ 222 (296)
+++++|...|+.||..|....+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~i 147 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNI 147 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999998888655433
No 44
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.52 E-value=0.07 Score=44.96 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=64.3
Q ss_pred HHHHhhc--ccCCcccCCCceeeHHHHHHHHhcc-----CChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHHHH
Q 044945 86 RKVFEIM--AVRDFLEYCDYAISRNSITAGCGQN-----GPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVWLT 157 (296)
Q Consensus 86 ~~~f~~M--~~~~~~~~~p~~~t~n~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~~~ 157 (296)
++.|+.- ..++- .+|..+|+.|.+. |.++=....++.|.+-|+.-|..+|+.||+..|. ..+=..
T Consensus 34 ~~~f~~~~~~~k~K-------~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n 106 (228)
T PF06239_consen 34 EELFERAPGQAKDK-------ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRN 106 (228)
T ss_pred HHHHHHHhhccccH-------HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCccccc
Confidence 6667665 45555 7777788777654 6777777788888888888888888888888332 111112
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhcCC-CCcchhHHh
Q 044945 158 LLSACR--VHRNVELAEKVADMILMIEP-NNTGAYVIL 192 (296)
Q Consensus 158 Li~~~~--~~g~~~~A~~~~~~m~~~~~-~~~~~y~~l 192 (296)
++.+-. ...+-+-|.+++++|...+. ||..++..+
T Consensus 107 ~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 107 FFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQML 144 (228)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 222211 12245667777788777663 677777776
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.42 E-value=0.43 Score=50.73 Aligned_cols=88 Identities=9% Similarity=0.088 Sum_probs=56.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..+..+-..|.+.|+.++|++.|++..+.. | .+...+..+...|...|+.++|...++...+..|.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P------------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE--P------------GNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 456667777778888888888887776632 2 34556666667777777777777777766655444
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHh
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+...+..+ ..++|.+++++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 44333333 45666666666554
No 46
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.40 E-value=0.079 Score=35.30 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=49.1
Q ss_pred HHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 111 TAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
-..+.+.|++++|.+.|++..+.. | -+...|..+=..+...|++++|...|++..+..|.|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--P------------DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--T------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--C------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 356788999999999999988764 2 266778888889999999999999999998877654
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.37 E-value=0.28 Score=37.66 Aligned_cols=88 Identities=19% Similarity=0.304 Sum_probs=70.3
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
....+...+.+.|+.++|.+.|+.....+ +.+...|..+-..|.+.|++++|...++...+..|.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD--------------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35566688889999999999999987753 2466788888889999999999999999988877777
Q ss_pred cchhHHh--------hHHHHHHHHHHHHhC
Q 044945 186 TGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 186 ~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
...|..+ ..++|.+.+++..+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6665555 678888888776664
No 48
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.33 E-value=0.32 Score=50.59 Aligned_cols=91 Identities=10% Similarity=-0.062 Sum_probs=49.9
Q ss_pred CCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHH
Q 044945 83 GSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLL 159 (296)
Q Consensus 83 g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li 159 (296)
|+. ...|++-.+. .|+...|..+-..+.+.|+.++|++.|++-.+. .|+ +...++.+-
T Consensus 590 Gr~~eAl~~~~~AL~l-----~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd------------~~~a~~nLG 650 (987)
T PRK09782 590 GQPELALNDLTRSLNI-----APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPN------------NSNYQAALG 650 (987)
T ss_pred CCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC------------CHHHHHHHH
Confidence 666 4444444332 344466777777777777777777777776553 233 333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 160 SACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
..+...|+.++|...+++..+..|.+...+..+
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455555555555555555555444444333333
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.29 E-value=0.31 Score=48.01 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 159 LSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
...+...|++++|..++++..+..|.+...+..+ ..++|.++|++-.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3344557999999999999888777676666666 678888888776543
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.22 E-value=0.17 Score=39.94 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=77.4
Q ss_pred cccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENV 154 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~ 154 (296)
.+...|++ ...|+.....+- .+...|..+-..+.+.|+.++|...|++..+.. | .+...
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p------------~~~~a 94 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQP----WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--A------------SHPEP 94 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C------------CCcHH
Confidence 45667777 666776554432 244788999999999999999999999998743 2 47778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 155 WLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
|..+=.++.+.|+.++|...|+...+..|.+...|...
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 88888899999999999999999999888887777554
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.11 E-value=0.49 Score=48.00 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCcc
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKE 215 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t 215 (296)
..+..+...+...|++++|+.+++++.+..|.+...+..+ ..++|++.+++-.. ..||...
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~ 428 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNIN 428 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChH
Confidence 3556778889999999999999999998888787666665 67888888886655 3587543
No 52
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.02 E-value=0.12 Score=39.94 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=59.6
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhh-hhcc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSR-IMHA---GSTENVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~-li~~---~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
|..++.++|-++++.|+++...++.+..- |+.++...=.. +... .|+..+-.|++.+|+..|++..|.++.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34678999999999999999999987553 44433311110 1111 699999999999999999999999999998
Q ss_pred Hhc
Q 044945 179 LMI 181 (296)
Q Consensus 179 ~~~ 181 (296)
.+.
T Consensus 79 s~~ 81 (126)
T PF12921_consen 79 SRK 81 (126)
T ss_pred HHH
Confidence 875
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.83 E-value=0.45 Score=39.80 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=64.7
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHH
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSA-CRVHRN--VELAEKVADMIL 179 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~-~~~~g~--~~~A~~~~~~m~ 179 (296)
|...|..|-..|...|+.++|...|++-.+.. | -|...+..+-.+ |...|+ .++|..++++..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P------------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--G------------ENAELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34678888888889999999999998776643 2 355556665554 356666 478888888887
Q ss_pred hcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 180 MIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 180 ~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+..|.+..++..+ .+++|...++++.+.
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777776666666 577777777777654
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.63 E-value=0.61 Score=43.56 Aligned_cols=130 Identities=11% Similarity=0.024 Sum_probs=90.4
Q ss_pred cccccCCH---HHHHhhcccCCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccCh-h------hhhhhh
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARH-A------PFSRIM 146 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~------ty~~li 146 (296)
.+...|+. .+.++++.+.. | +...+-.+...|.+.|++++|.+++....+.+..+.. . .+..++
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-----P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-----PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44557777 77788887652 3 2246888999999999999999999999998764322 2 122222
Q ss_pred cc----------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hhHHh------hHH
Q 044945 147 HA----------------GS-----TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG----AYVIL------INE 195 (296)
Q Consensus 147 ~~----------------~p-----~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~y~~l------~~~ 195 (296)
.. .| +...+-++...+...|+.++|.+++++..++.|.+.. .+... ..+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 11 44 8889999999999999999999999999988775542 22211 345
Q ss_pred HHHHHHHHHHhCCCcCCCc
Q 044945 196 ALKDLLERMEQEGYVPDTK 214 (296)
Q Consensus 196 ~a~~l~~~M~~~g~~p~~~ 214 (296)
.+.+.++...+. .|+..
T Consensus 317 ~~~~~~e~~lk~--~p~~~ 333 (409)
T TIGR00540 317 KLEKLIEKQAKN--VDDKP 333 (409)
T ss_pred HHHHHHHHHHHh--CCCCh
Confidence 555666554433 56655
No 55
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.39 E-value=0.12 Score=31.68 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
.+|..+-..|...|++++|+++|++..+..|.|...|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 357788899999999999999999999998888776654
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.29 E-value=1.5 Score=38.93 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=80.0
Q ss_pred cccccCCH---HHHHhhcccCCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
.|.+.|+. ...|++..+. .| +...|+.+-..|.+.|+.++|.+.|++..+. .| -+..
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P------------~~~~ 133 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALAL-----RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DP------------TYNY 133 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC------------CCHH
Confidence 56677777 5555555443 33 3468999999999999999999999988763 23 2456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--chhHHh-----hHHHHHHHHHHHH
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNT--GAYVIL-----INEALKDLLERME 205 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~y~~l-----~~~~a~~l~~~M~ 205 (296)
+|.-+-..|...|++++|...|+...+..|.+. ..|..+ ..++|...|.+..
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777788888899999999999999988877664 233322 4788888886644
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=94.26 E-value=1.1 Score=43.66 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=17.7
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHc
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMA 133 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~ 133 (296)
.|..+-..|...|+.++|.+.+++..+.
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4555556666666666666666666553
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.18 E-value=0.12 Score=49.91 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=69.7
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCcc-Chhhhhhhhcc------------------CCCHHHHHHHH---HHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKA-RHAPFSRIMHA------------------GSTENVWLTLL---SAC 162 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~------------------~p~~~~~~~Li---~~~ 162 (296)
.||.++=++|.-.++.+.|++.|++-.+ +.| ..++|+-+=+- ..|...||+.- ..|
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 6899999999999999999999987655 445 56677654333 66777777643 457
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHH
Q 044945 163 RVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M 204 (296)
.|.++++.|+--|++..+..|.|.+.-..+ ..|+|.+++++-
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 788999999999998888877765433333 445555555443
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.00 E-value=1.8 Score=44.15 Aligned_cols=135 Identities=9% Similarity=0.021 Sum_probs=85.8
Q ss_pred cccccccCCH---HHHHhhcccCCccc-CCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccC-hhhhhhhhcc-
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLE-YCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKAR-HAPFSRIMHA- 148 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~-~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~- 148 (296)
-++|...++. ..++.+.-...-.+ ..| +......|..+|...+++++|..+++++.+. .|- ..-|+.-...
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~p 411 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCCCCCCC
Confidence 4788888888 77777764322100 022 3334678999999999999999999999873 341 1112211111
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCc
Q 044945 149 GSTENV-WLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTK 214 (296)
Q Consensus 149 ~p~~~~-~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~ 214 (296)
.||-.. +..+...+...|++.+|++.++++....|.|......+ ...+|++.++..... .|+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccH
Confidence 344433 34455667788888888888888887777777666665 557777766443332 56543
No 60
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.91 E-value=1.3 Score=32.55 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=65.3
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
++-.+...+.+.|+.++|.+.|.+..+.. |+. ......+..+-..+.+.|++++|...|+...+..|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKS---------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc---------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 45566777889999999999999997642 211 0123455668888999999999999999998765543
Q ss_pred ---cchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 186 ---TGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 186 ---~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
..++..+ ..++|.+.+++..+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 2223322 5678888888887763
No 61
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.79 E-value=0.99 Score=47.04 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=77.2
Q ss_pred cccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChh-hhhhhhc-----c--
Q 044945 80 SRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHA-PFSRIMH-----A-- 148 (296)
Q Consensus 80 ~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~li~-----~-- 148 (296)
.+.|+. ...|+++... .|+...+..+...+.+.|+.++|.+.|++-.+.. |+.. .+..+.. +
T Consensus 520 ~~~Gr~eeAi~~~rka~~~-----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH-----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 356666 5556554332 2333446666667777788888888887776654 3222 1211111 1
Q ss_pred -------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 149 -------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 149 -------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.|+...|..+-..+.+.|+.++|...+++..+..|.+...++.+ ..++|...+++-.+.
T Consensus 593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 56777777777788888888888888888877777666666555 567777766665543
Q ss_pred CCcCCC
Q 044945 208 GYVPDT 213 (296)
Q Consensus 208 g~~p~~ 213 (296)
.|+.
T Consensus 673 --~P~~ 676 (987)
T PRK09782 673 --LPDD 676 (987)
T ss_pred --CCCC
Confidence 4543
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.67 E-value=1.3 Score=41.32 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=64.6
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+.....++...+.+.|+.++|.+++.+-.+. .||... .++.+....|+.+++.+..+...+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---------------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR---------------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 3356777888889999999999999887663 233311 23344445678888888888877777
Q ss_pred CCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 183 PNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 183 ~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
|.|...+.++ .+++|.+.|+...+. .|+..++
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~ 364 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDY 364 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 7666655555 678888888777764 4665553
No 63
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.49 E-value=0.55 Score=31.79 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=49.7
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
..|.+.+++++|++.++.+...+ | .+...|...=..|.+.|++++|...|+...+..|.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--P------------DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--c------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 46788999999999999998853 2 3566677777788999999999999999988777544
No 64
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.37 E-value=1 Score=33.26 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=69.5
Q ss_pred cccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENV 154 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~ 154 (296)
.+.+.|+. .+.|+...+.+-. .......+..+-..+.+.|+.++|.+.|++..... |+. .....+
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~---------~~~~~~ 78 (119)
T TIGR02795 11 LVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKS---------PKAPDA 78 (119)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCC---------CcccHH
Confidence 45566777 6677766543210 01112356668899999999999999999987642 211 112445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhH
Q 044945 155 WLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYV 190 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~ 190 (296)
+..+-..+.+.|+.++|...+++..+..|.+..+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 667777888999999999999999988776665443
No 65
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.20 E-value=0.5 Score=32.19 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=63.8
Q ss_pred cccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENV 154 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~ 154 (296)
.|.+.|++ ...|++..+..- .+...|..+-..|...|+.++|.+.|.+..... ..+..+
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~ 70 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDP----DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------------PDNAKA 70 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CcchhH
Confidence 34455666 566666544321 122668888899999999999999999877643 134467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 155 WLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+..+...+...|+.++|...++...+..
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 8888889999999999999999887643
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.18 E-value=0.42 Score=42.56 Aligned_cols=109 Identities=9% Similarity=-0.099 Sum_probs=60.2
Q ss_pred ccccccCCHHHHHhhccc-CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHH
Q 044945 77 LRPSRSGSVRKVFEIMAV-RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVW 155 (296)
Q Consensus 77 ~~y~k~g~~~~~f~~M~~-~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~ 155 (296)
..|...|++.+-++-..+ .++ -.....|..|.+.++++.|.+.++.|.+.. .|..... ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~~~l-------E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~q----------La 170 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKGGSL-------ELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQ----------LA 170 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTTTCH-------HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHH----------HH
T ss_pred HHHHHcCCHHHHHHHHHccCcc-------cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHH----------HH
Confidence 456677777433333332 233 556678889999999999999999997642 2322111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHH
Q 044945 156 LTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 156 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M 204 (296)
.+.++.+.-.+++.+|..+|+++.++-++++...+.+ .+++|++++.+-
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2334333333456677777777655433344333333 566666666553
No 67
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.11 E-value=1 Score=41.87 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=71.4
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..+...+++ ..+|+++.+++- -.+-.|...|...++..+|.+++++..... | -|..
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p------------~d~~ 235 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDP-------EVAVLLARVYLLMNEEVEAIRLLNEALKEN--P------------QDSE 235 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCC-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--C------------CCHH
Confidence 334445555 888888887765 445567788878888889988888877532 1 2444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHH
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M 204 (296)
..+.-...|.+.|+.+.|..+.++..+..|.+..+|..| .++.|...++.+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555566677777777777777777666666666666 556666555554
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=93.01 E-value=1 Score=43.89 Aligned_cols=103 Identities=9% Similarity=-0.029 Sum_probs=66.9
Q ss_pred HHHHhhcccCCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHh
Q 044945 86 RKVFEIMAVRDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRV 164 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~ 164 (296)
...+++..+. .| +...|..+-..+...|+.++|.+.|++..+.. | .+...|..+-..|..
T Consensus 324 ~~~~~~Al~l-----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P------------~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 324 KEHAIKATEL-----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--P------------ISADIKYYYGWNLFM 384 (553)
T ss_pred HHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHH
Confidence 5555554433 23 33577788788889999999999999988753 3 234456666666777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 165 HRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 165 ~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.|++++|...+++..+..|.+...+..+ ..++|...+++..+.
T Consensus 385 ~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 385 AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 7777777777777777666544332221 456676666665543
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.89 E-value=0.88 Score=34.81 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=69.8
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|+. .+.|+.....+- .+...|..+-..|.+.|+.++|...|++....+ | .+..
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p------------~~~~ 86 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDP----YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--P------------DDPR 86 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C------------CChH
Confidence 456677777 666666554322 244778888899999999999999999876643 2 4566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
+|..+=..|...|+.++|...|+...+..|.+.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 87 PYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 666677789999999999999999988776554
No 70
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.72 E-value=0.49 Score=31.66 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=50.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHR-NVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~ 183 (296)
.+|..+=..+.+.|++++|+..|.+-.+.. | -+...|..+=.+|.+.| ++++|...+++..+..|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--P------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--T------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567777788889999999999999887753 2 35567777777888888 69999999888776543
No 71
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.50 E-value=0.26 Score=34.78 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=48.8
Q ss_pred cCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh----
Q 044945 117 NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL---- 192 (296)
Q Consensus 117 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l---- 192 (296)
.|+.++|+.+|+++.+..-. .|+...|-.+-.+|.+.|+.++|..+++. .+..+.+......+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~------------~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT------------NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG------------THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC------------ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 68899999999999875311 12444555588899999999999999988 44333332222222
Q ss_pred ----hHHHHHHHHHH
Q 044945 193 ----INEALKDLLER 203 (296)
Q Consensus 193 ----~~~~a~~l~~~ 203 (296)
.+++|.+.+++
T Consensus 69 ~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 69 LKLGKYEEAIKALEK 83 (84)
T ss_dssp HHTT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 67788777653
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=92.42 E-value=2.3 Score=37.81 Aligned_cols=89 Identities=18% Similarity=0.063 Sum_probs=73.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|.-+=..|.+.|+.++|...|.+..+.. | .+...|+.+=..|...|++++|...|+...+..|.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 130 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR--P------------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT 130 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--C------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 457777778899999999999999887742 2 35788999999999999999999999999998888
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+..+|..+ ..++|.+.|++-.+.
T Consensus 131 ~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 131 YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777665 678888888776653
No 73
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.31 E-value=1.5 Score=40.13 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
..+...|++++|+++|++..+.. |+ +...|..+-.+|.+.|++++|...+++..+..|.+...|..
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PN------------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 44567899999999999988743 32 33445555555556666666666666665555544444444
Q ss_pred h--------hHHHHHHHHHHHH
Q 044945 192 L--------INEALKDLLERME 205 (296)
Q Consensus 192 l--------~~~~a~~l~~~M~ 205 (296)
+ .+++|...|++..
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 4 3455555554444
No 74
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.30 E-value=2.3 Score=36.78 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=71.4
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.-+..+....++|++.+|...|++-..-. ++|...||.+=-+|-+.|+.++|..-+.+..+..+.+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA--------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC--------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence 44557888899999999999999986632 4899999999999999999999999999998876654
Q ss_pred cchhHHh--------hHHHHHHHHHHHHhCCC
Q 044945 186 TGAYVIL--------INEALKDLLERMEQEGY 209 (296)
Q Consensus 186 ~~~y~~l--------~~~~a~~l~~~M~~~g~ 209 (296)
...++-+ ..+.|..++..-...+-
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 4444443 67888888876665544
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.24 E-value=1.9 Score=45.91 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCcc
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKE 215 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t 215 (296)
+++...+..|-..|.+.|+.++|...+++..+..|.+...+..+ ..++|.+.++...+ ..|+...
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~ 672 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLN 672 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChH
Confidence 34556777888899999999999999999999888887776666 68999998886654 3555433
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.15 E-value=1.7 Score=38.91 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=20.3
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
-++|-+|.+.+-+|+ -+--+|=+-|-+.|.+|+|+.+...+.+
T Consensus 55 vdlF~e~l~~d~~t~----e~~ltLGnLfRsRGEvDRAIRiHQ~L~~ 97 (389)
T COG2956 55 VDLFLEMLQEDPETF----EAHLTLGNLFRSRGEVDRAIRIHQTLLE 97 (389)
T ss_pred HHHHHHHHhcCchhh----HHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 455555554443111 2222333444555666666666555544
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=92.09 E-value=2.5 Score=34.10 Aligned_cols=76 Identities=11% Similarity=0.106 Sum_probs=59.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..|..+-..|.+.|+.++|...|++..+.+-.| ++ ...|..+-..|.+.|++++|...+++..+..|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDP------------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 457778888899999999999999987643221 22 35788888899999999999999999988777
Q ss_pred CCcchhHHh
Q 044945 184 NNTGAYVIL 192 (296)
Q Consensus 184 ~~~~~y~~l 192 (296)
.+...+..+
T Consensus 104 ~~~~~~~~l 112 (172)
T PRK02603 104 KQPSALNNI 112 (172)
T ss_pred ccHHHHHHH
Confidence 665555433
No 78
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.92 E-value=3 Score=42.66 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
.|+...+-.++..+...++..+|...++++.+..|.+...+..
T Consensus 166 dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~ 208 (822)
T PRK14574 166 DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKN 208 (822)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5666666555555555666666999999998888766644433
No 79
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=91.83 E-value=2.5 Score=39.49 Aligned_cols=102 Identities=10% Similarity=-0.064 Sum_probs=63.9
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+...+-.+...+.+.|+.++|.+++++..+.. ||... ........-.....++.+.+.+.++...+..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~----------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA----------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc----------chhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 33788889999999999999999999988753 32210 0001122222233466777788887777766
Q ss_pred CCCc--chhHHh--------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 183 PNNT--GAYVIL--------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 183 ~~~~--~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
|.|. ....++ .+++|.+.|+.-......||....
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 6555 333333 678888888743343445665443
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.33 E-value=3.1 Score=44.12 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=87.5
Q ss_pred cccccccCCHHHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHc-CCccChhhhhhhhcc------
Q 044945 76 GLRPSRSGSVRKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMA-KIKARHAPFSRIMHA------ 148 (296)
Q Consensus 76 i~~y~k~g~~~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~li~~------ 148 (296)
-++|+-.-.+.++|++-..- +..| ..|..|..-|.+.+..++|-++|++|.+. | -....|......
T Consensus 1507 En~yG~eesl~kVFeRAcqy-cd~~----~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1507 ENAYGTEESLKKVFERACQY-CDAY----TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHhhCcHHHHHHHHHHHHHh-cchH----HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccH
Confidence 45666433347788776542 1001 45888888888888888888888888773 3 122222222222
Q ss_pred --------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHH
Q 044945 149 --------------GS---TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLER 203 (296)
Q Consensus 149 --------------~p---~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~ 203 (296)
-| .+..-.-....=.++|+.+.+..+|+......|.....|+.. ..+.+.++|++
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 22 233344445566788999999999999988777778888887 34778899999
Q ss_pred HHhCCCcCC
Q 044945 204 MEQEGYVPD 212 (296)
Q Consensus 204 M~~~g~~p~ 212 (296)
....++.|-
T Consensus 1660 vi~l~l~~k 1668 (1710)
T KOG1070|consen 1660 VIELKLSIK 1668 (1710)
T ss_pred HHhcCCChh
Confidence 999988886
No 81
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.11 E-value=0.53 Score=31.18 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 159 LSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
-..+.+.|++++|...|+...+..|.+...|..+ ..++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467889999999999999999888777777666 78899899988764
No 82
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.87 E-value=1.6 Score=34.13 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=51.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
-....++..+...|+.++|.++........ +-|...|-.||.+|...|+..+|.++|+.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 557778888999999999999999987743 35788999999999999999999999999864
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=90.86 E-value=5.6 Score=33.13 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=73.3
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCC-ceeeHHHHHHH-HhccCC--hhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCD-YAISRNSITAG-CGQNGP--FDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p-~~~t~n~li~~-~~~~g~--~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
-..|...|+. ...|++-.+. .| |...|..+-.. |.+.|+ .++|.+++++-.+..
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-------------- 140 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-------------- 140 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--------------
Confidence 3567788888 5566554432 23 33567777666 467777 599999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
+-+..++..|=..+.+.|++++|...|+++.+..|++..-+.++
T Consensus 141 P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 141 ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 23667888888899999999999999999999888777666655
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.51 E-value=5.4 Score=31.97 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=58.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+...+-..|++++|+..|++-.... |+. .....+|..+=..|.+.|+.++|...++...+..|.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~---------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDP---------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 567888888889999999999999987642 211 012347788888999999999999999998877665
Q ss_pred CcchhHHh
Q 044945 185 NTGAYVIL 192 (296)
Q Consensus 185 ~~~~y~~l 192 (296)
...++..+
T Consensus 105 ~~~~~~~l 112 (168)
T CHL00033 105 LPQALNNM 112 (168)
T ss_pred cHHHHHHH
Confidence 55544444
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.32 E-value=4.4 Score=34.64 Aligned_cols=154 Identities=16% Similarity=0.063 Sum_probs=98.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
.--|--+|-+.|+...|.+-+++-.+.. +-+.-+|.++-..|-+.|..+.|.+-|++-.+..|.|-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D--------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD--------------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 4556679999999999999999987742 23567899999999999999999999999988777554
Q ss_pred chhHHh--------hHHHHHHHHHHHHhCCC---cCCCccceeec--chhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEE
Q 044945 187 GAYVIL--------INEALKDLLERMEQEGY---VPDTKEVLLDV--EEEQKKNILYYHGERLALVFGIISTPDGTTIRV 253 (296)
Q Consensus 187 ~~y~~l--------~~~~a~~l~~~M~~~g~---~p~~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (296)
..-|-- ..++|...|++=...-. .+++..-...| ..+.... ..+.+..+..+....+.+.+.+
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~----A~~~l~raL~~dp~~~~~~l~~ 179 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ----AEEYLKRALELDPQFPPALLEL 179 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh----HHHHHHHHHHhCcCCChHHHHH
Confidence 332222 78999988887665422 22222111111 1111111 1111112222211112222233
Q ss_pred EecccCccchhhHHHHHhhhhcceE
Q 044945 254 IKNLPSLRGLRHGNKVVSKIVHREM 278 (296)
Q Consensus 254 i~~~~k~g~~~~A~~~f~~m~~r~~ 278 (296)
-+..-+.|+.-.|..+++....++.
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhccc
Confidence 5667789999999999988777664
No 86
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.28 E-value=1.3 Score=30.34 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=51.7
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.+|+.+-..|.+.|+.++|++.|++-.+. .+ .+-...|+ ..+++-+=..|...|+.++|.+.+++-.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~-------~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EE-------QLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH-------HTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH-------HHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46888999999999999999999998753 11 00000344 56788888999999999999999997653
No 87
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=89.48 E-value=0.55 Score=43.98 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=56.2
Q ss_pred cccccccccCCHHHHHhhccc---CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 74 VDGLRPSRSGSVRKVFEIMAV---RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 74 ~~i~~y~k~g~~~~~f~~M~~---~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
+.|..|-+.|...++++-... .|+ -||..|+|.||+.+.+.|++..|.++..+|...+...+..|+.--+.+
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGi---F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGI---FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhccc---CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 456777788877555555544 577 999999999999999999999999999999988876666665544443
No 88
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=89.06 E-value=2.2 Score=39.67 Aligned_cols=111 Identities=10% Similarity=0.095 Sum_probs=72.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 044945 109 SITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGA 188 (296)
Q Consensus 109 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 188 (296)
+|+..+...++.+.|.++|+++.+.. |++ +..|...|...++-.+|.+++++..+..|.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~---------------pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--- 233 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD---------------PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQD--- 233 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC---------------CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---
Confidence 45556666789999999999988753 443 3346777777888889999988888665545
Q ss_pred hHHh-----------hHHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecc
Q 044945 189 YVIL-----------INEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLALVFGIISTPDGTTIRVIKNL 257 (296)
Q Consensus 189 y~~l-----------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 257 (296)
+.+| ..+.|.++.++..+. .|+....+. .+...|
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~---------------------------------~La~~Y 278 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWY---------------------------------QLAECY 278 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHH---------------------------------HHHHHH
Confidence 3333 345565555555432 444321110 114567
Q ss_pred cCccchhhHHHHHhhhh
Q 044945 258 PSLRGLRHGNKVVSKIV 274 (296)
Q Consensus 258 ~k~g~~~~A~~~f~~m~ 274 (296)
.+.|+.+.|...++.++
T Consensus 279 i~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 279 IQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHhcCc
Confidence 78888888888888877
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=88.76 E-value=3.3 Score=37.95 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=72.0
Q ss_pred ccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHH
Q 044945 79 PSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVW 155 (296)
Q Consensus 79 y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~ 155 (296)
+.+.|++ .+.|++..+.+- -+...|..+-.+|.+.|++++|+..+++..+.. | .+...|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P------------~~~~a~ 73 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIELD--P------------SLAKAY 73 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c------------CCHHHH
Confidence 3445666 556666554321 123578888889999999999999999987743 2 356678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 156 LTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 156 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
..+-.+|...|++++|...|++..+..|.+......+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8888899999999999999999999888776555444
No 90
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.57 E-value=2.8 Score=39.32 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 149 GSTENVWLTLLSACR-VHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.|+.+-|-.+|..|. +.|++..|..+++....+-|.|......|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 899999999987765 67999999999999988777777666555
No 91
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.47 E-value=2.6 Score=32.92 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=65.0
Q ss_pred HhccCChhHHHHHHHHHHH--cC-CccChhh--hhhhhcc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 114 CGQNGPFDEGLKFFGQMLM--AK-IKARHAP--FSRIMHA---GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 114 ~~~~g~~~~A~~l~~~M~~--~g-~~pd~~t--y~~li~~---~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
....|+.+.+.+.+.+... .| +-|+... |..-... .--......++..+...|++++|..+.+.+....|.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~ 95 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD 95 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence 4567889999999999876 23 3333222 1111111 2234567778888889999999999999999999988
Q ss_pred cchhHHh--------hHHHHHHHHHHHH-----hCCCcCCCcc
Q 044945 186 TGAYVIL--------INEALKDLLERME-----QEGYVPDTKE 215 (296)
Q Consensus 186 ~~~y~~l--------~~~~a~~l~~~M~-----~~g~~p~~~t 215 (296)
...|..+ ...+|.+.++++. +.|+.|+..+
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 8888777 5677777776653 4699888544
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=88.04 E-value=15 Score=33.90 Aligned_cols=233 Identities=11% Similarity=0.072 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHH
Q 044945 27 MDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVF 89 (296)
Q Consensus 27 ~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f 89 (296)
+.+|.++..+=.+.+-. -|....+..+..+........+.+..++. -......|+. +.-.
T Consensus 100 ~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr---arlll~~~d~~aA~~~v 176 (400)
T COG3071 100 FQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR---ARLLLNRRDYPAARENV 176 (400)
T ss_pred HHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH---HHHHHhCCCchhHHHHH
Confidence 77777777665554421 33444455555554444333333333211 1223344544 2222
Q ss_pred ---hhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccC-------hhhhhhhhcc-----------
Q 044945 90 ---EIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKAR-------HAPFSRIMHA----------- 148 (296)
Q Consensus 90 ---~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-------~~ty~~li~~----------- 148 (296)
.+|..+.. ..-......|.+.|.......++..|.+.|.--| ..+|..++.-
T Consensus 177 ~~ll~~~pr~~-------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 177 DQLLEMTPRHP-------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred HHHHHhCcCCh-------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 23444444 6788899999999999999999999999887544 3466666655
Q ss_pred ----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh---hH---HHHHHH-HHHHHhCCCcC
Q 044945 149 ----------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL---IN---EALKDL-LERMEQEGYVP 211 (296)
Q Consensus 149 ----------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l---~~---~~a~~l-~~~M~~~g~~p 211 (296)
+.+...-.+++.-+..+|+-++|.++.++-.++.- |..-+..+ .. +.-.+. -......+-.|
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-ChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 44566666788899999999999999888776542 22122222 11 222222 22345566666
Q ss_pred CCccceeecchhhhhhhhh-hhhHHHHHHHHhhcCCCCCeEEEEecccCccchhhHHHHHhhhh
Q 044945 212 DTKEVLLDVEEEQKKNILY-YHGERLALVFGIISTPDGTTIRVIKNLPSLRGLRHGNKVVSKIV 274 (296)
Q Consensus 212 ~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~m~ 274 (296)
+.... ++.....+..+ ..++.+..+... .+...+....-+.|.+.|+.++|..++.+-.
T Consensus 329 ~L~~t---LG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLST---LGRLALKNKLWGKASEALEAALKL-RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHH---HHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 43222 23322222211 122222222211 2222222222567889999999998887644
No 93
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.98 E-value=8.7 Score=33.66 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=62.7
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|+.-+.-+.+.|+.++|...|+...+.- |+.. | .|+ .+--|=..|...|++++|...|+.+.+.-|.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~-~------a~~--A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDST-Y------QPN--ANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCc-c------hHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 347776666667799999999999988752 3210 0 122 3345566888999999999999999887654
Q ss_pred CcchhHHh-----------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL-----------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l-----------~~~~a~~l~~~M~~~ 207 (296)
+......+ ..++|.+.+++..+.
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43333322 567888888777654
No 94
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=87.82 E-value=2.8 Score=37.03 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=62.4
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH 165 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~ 165 (296)
+.+|.+-++.+-. ..++....+++.- ...++.+.|.++|+...+. + ..+...|...|+.+.+.
T Consensus 21 R~vF~~a~~~~~~--~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f-------------~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 21 RKVFKRARKDKRC--TYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-F-------------PSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHCCCCS---THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-H-------------TT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-C-------------CCCHHHHHHHHHHHHHh
Confidence 6777776654431 2333333344332 2245555677777776653 1 35778899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCc---chhHHh--------hHHHHHHHHHHHHh
Q 044945 166 RNVELAEKVADMILMIEPNNT---GAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~---~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
|+.+.|..+|++..+.-+.+. ..|... ..+.+.++..++.+
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999876533222 234433 35556666666655
No 95
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.73 E-value=14 Score=36.38 Aligned_cols=177 Identities=12% Similarity=0.040 Sum_probs=92.3
Q ss_pred CCC-eeehHHHHHhh---cccHHHHHHHHHHhHhcccC-CCccccHHHHHhcCCCccCCce---------ehhhhhcccc
Q 044945 10 RNE-NVELSNGLAGC---NEFMDKANGITDRFEERAVS-IGHYADLDGISDQLPSSSGGRQ---------VDIHFDGGVD 75 (296)
Q Consensus 10 ~pd-~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~-~g~~~~~~~~~~~m~~~~~~~~---------~~~~~~~~~~ 75 (296)
+|. .|.|+++=+.+ |. +-.|++-|++-..-+.. ...+-+.-.+..+++....+-. ....+.++-+
T Consensus 214 qp~fAiawsnLg~~f~~~Ge-i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGE-IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred CCceeeeehhcchHHhhcch-HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 443 67777654433 54 77777777776554321 1111111222333333221110 0111333444
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCc-eeeHHHHHHHHhccCChhHHHHHHHHHHHcC-----------------
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDY-AISRNSITAGCGQNGPFDEGLKFFGQMLMAK----------------- 134 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~-~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g----------------- 134 (296)
-..|-..|.+ -+.+++-.+. .|+ ...||-|-.++-..|++.+|++.+..-....
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~-----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALEL-----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhc-----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 5678888888 4445544332 332 3579999999999999999999998765421
Q ss_pred --CccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 135 --IKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 135 --~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
+.+-..-|-.-+...|+ ...+|-|-..|-..|++++|...+++..+..|.-..+|+-+
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 11222222222222333 23455555566666666666666666655555444455544
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=87.63 E-value=3.6 Score=40.67 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=66.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc------------------------------------
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA------------------------------------ 148 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~------------------------------------ 148 (296)
..|--+|.+|+..|+..+|..+..+-.+ -+||..-|..+-+.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 4466677777777777777777777666 45677777777666
Q ss_pred ----------------------------------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 149 ----------------------------------------------GS-TENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 149 ----------------------------------------------~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.| +...||.|=.+|.+.|.-.+|...+.+-.+.
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 44 4567888888888888888888888777664
Q ss_pred CCCCc---chhHHh-----hHHHHHHHHHHHHh
Q 044945 182 EPNNT---GAYVIL-----INEALKDLLERMEQ 206 (296)
Q Consensus 182 ~~~~~---~~y~~l-----~~~~a~~l~~~M~~ 206 (296)
.-.+. --|..+ .+++|.+...+|..
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 32121 122222 56777777766654
No 97
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=1.9 Score=40.39 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=65.0
Q ss_pred HhccCChhHHHHHHHHHHHcC-Cc-cChhhhhhhhcc------------------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 044945 114 CGQNGPFDEGLKFFGQMLMAK-IK-ARHAPFSRIMHA------------------GSTENVWLTLLSACRVHRNVELAEK 173 (296)
Q Consensus 114 ~~~~g~~~~A~~l~~~M~~~g-~~-pd~~ty~~li~~------------------~p~~~~~~~Li~~~~~~g~~~~A~~ 173 (296)
+-...++|+|+.+|++..+.. .+ -|.-||+-++-. +--..|+.++=+-|+-.+.-|.|..
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 345689999999999998862 11 277888887766 3345688888899999999999999
Q ss_pred HHHHHHhcCCCCcchhHHh
Q 044945 174 VADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 174 ~~~~m~~~~~~~~~~y~~l 192 (296)
.|+.-.+.+|.-...|+++
T Consensus 352 YFkRALkLNp~~~~aWTLm 370 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLM 370 (559)
T ss_pred HHHHHHhcCcchhHHHHHh
Confidence 9999999988888999999
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=87.36 E-value=3.8 Score=39.55 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=44.6
Q ss_pred HHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 113 GCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN-VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 113 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
.+...|+.++|++.+.+=... .+|.. ..-..-..|.+.|+.++|+.++..+.+++|.|...|..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~---------------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~ 77 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ---------------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRG 77 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh---------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 346789999999998663222 23433 33445556677788888888888888877777766666
Q ss_pred h
Q 044945 192 L 192 (296)
Q Consensus 192 l 192 (296)
+
T Consensus 78 L 78 (517)
T PF12569_consen 78 L 78 (517)
T ss_pred H
Confidence 6
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=87.20 E-value=7.3 Score=36.75 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=47.2
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 044945 110 ITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGA 188 (296)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 188 (296)
...-+.+.++..+|.+.++.+... .|+ ...+-.+=.+|.+.|+..+|.++++.-....|.|...
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l---------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL---------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc---------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 345555666666666666655543 455 4555566677888888888888888887777888888
Q ss_pred hHHh
Q 044945 189 YVIL 192 (296)
Q Consensus 189 y~~l 192 (296)
|..|
T Consensus 411 w~~L 414 (484)
T COG4783 411 WDLL 414 (484)
T ss_pred HHHH
Confidence 8888
No 100
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.13 E-value=0.87 Score=30.27 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=36.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 163 RVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.+.|++++|..+|+...+..|.|...+..+ .+++|.+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467999999999999999888777666555 789998888877654
No 101
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=86.59 E-value=2 Score=37.86 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=22.4
Q ss_pred eeHHHHHHHHhcc-----CChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 105 ISRNSITAGCGQN-----GPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 105 ~t~n~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
.+|-+.+.-+... +.++-....++.|.+.|++-|..+|+.||+.
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~Llnv 116 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNV 116 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 4444444444332 3444444455555555555555555555555
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=86.11 E-value=12 Score=38.28 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=93.3
Q ss_pred cccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENV 154 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~ 154 (296)
.++.+|++ ..||.+.++... -+.-+|--+-++|...|++..|.++|+.-.+.-.+ .-++.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~----~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~------------~~~~~v 718 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATS----DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK------------KNRSEV 718 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHh----hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc------------cCCHHH
Confidence 45677777 899998886321 12267888899999999999999999886654332 457778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cchhHHh--------------------------hHHHHHHHHHHHHhC
Q 044945 155 WLTLLSACRVHRNVELAEKVADMILMIEPNN-TGAYVIL--------------------------INEALKDLLERMEQE 207 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~y~~l--------------------------~~~~a~~l~~~M~~~ 207 (296)
-+.|=.++-++|.+.+|...+..-....|.| ++-+|.. ..+.|.++|.+|...
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888999999999999999888877766654 4556655 568899999999988
Q ss_pred CCcCCCccc
Q 044945 208 GYVPDTKEV 216 (296)
Q Consensus 208 g~~p~~~t~ 216 (296)
+-.+-..+.
T Consensus 799 ~d~r~~~~~ 807 (1018)
T KOG2002|consen 799 GDKRISKTV 807 (1018)
T ss_pred CCCCCCHHH
Confidence 776544443
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=86.09 E-value=14 Score=34.05 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=74.3
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-----------------CCCHHHHHHHHHHHHhcCCH
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-----------------GSTENVWLTLLSACRVHRNV 168 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-----------------~p~~~~~~~Li~~~~~~g~~ 168 (296)
.=-+++.=+.+.|+.++|.++..+-.+++..|...++-.=+.. +-+...+.+|=..|.+++.|
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 3456777889999999999999999999998886666555544 33456778888888999999
Q ss_pred HHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHH
Q 044945 169 ELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERME 205 (296)
Q Consensus 169 ~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~ 205 (296)
.+|...|+.-.+..+ +..+|+.+ ..++|.+.+++=.
T Consensus 345 ~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 345 GKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999997665443 66677777 4566666655544
No 104
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.07 E-value=2.8 Score=28.19 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 160 SACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
..|.+.+++++|.++++.+.+..|.+...|... .+++|...|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 578899999999999999999888777666555 7788888888877543
No 105
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=85.86 E-value=3.4 Score=36.50 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhCCCcCCCcccee
Q 044945 193 INEALKDLLERMEQEGYVPDTKEVLL 218 (296)
Q Consensus 193 ~~~~a~~l~~~M~~~g~~p~~~t~~~ 218 (296)
.-+.+.+++++|...|+.||..+-..
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDI 163 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHH
Confidence 34678899999999999999655433
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.54 E-value=4.4 Score=26.86 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh---------hHHHHHHHHHH
Q 044945 151 TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL---------INEALKDLLER 203 (296)
Q Consensus 151 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l---------~~~~a~~l~~~ 203 (296)
+..+|..+=..+...|++++|...|++..+..|.+...|..+ ..++|.+.+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 456788888899999999999999999999888777666665 24566555544
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=85.42 E-value=9.9 Score=34.18 Aligned_cols=86 Identities=8% Similarity=-0.024 Sum_probs=61.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
...+-..+...|+.++|.+.+++..+.. | .+...+..+-..|...|++++|...+++..+..+.+.
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--p------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELN--P------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--C------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 3445567888999999999999988753 2 3456677888888999999999999998876544221
Q ss_pred c----hhHHh--------hHHHHHHHHHHHHh
Q 044945 187 G----AYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 187 ~----~y~~l--------~~~~a~~l~~~M~~ 206 (296)
. .|..+ ..++|..++++...
T Consensus 183 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 183 MLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1 12222 67888888888753
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=84.97 E-value=16 Score=32.45 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=70.4
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCceee---HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccC
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYAIS---RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAG 149 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t---~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 149 (296)
+..|.+-+++ .+.++.|++.+ .|.+. ..++|+-+.-.....+|.-+|+++.+. + .
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~-----eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~-------------~ 198 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQID-----EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F-------------G 198 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCS-----CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c-------------C
Confidence 4566777777 88888887543 22222 333444443345688999999997653 2 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh---------hHHHHHHHHHHHHhC
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL---------INEALKDLLERMEQE 207 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l---------~~~~a~~l~~~M~~~ 207 (296)
+++.+.|.+.-++...|++++|+.++++..+..|.|..+..-+ ..+.+.+++.+++..
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5677788888888889999999999888777666544332222 124566777777653
No 109
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=84.73 E-value=17 Score=35.12 Aligned_cols=100 Identities=7% Similarity=-0.042 Sum_probs=52.2
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhh-hhccCCCHHHH--HHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSR-IMHAGSTENVW--LTLLSAC 162 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~-li~~~p~~~~~--~~Li~~~ 162 (296)
......+..+|+ | .+|+.|-.-|....+.+-..+++.+.....-......... --.-.|....| ..|-.-|
T Consensus 131 ~~yl~~~l~Kgv----P--slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 131 DEYLRPQLRKGV----P--SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHhcCC----c--hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 344444556777 1 3578888888877777777777777654311000000000 00003444344 3334445
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 163 RVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
-..|+.++|....++-.+..|..+..|.+
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 56677777777777666655544444433
No 110
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.37 E-value=1.3 Score=39.79 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=72.2
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-----
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA----- 148 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~----- 148 (296)
.+|.+-|.. ++-|+.-.++ .|-+.||--|-..|-+-.+++.|+.+|.+=.+ ..|-.+||-+=+.-
T Consensus 231 kCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHH
Confidence 677777877 5555543322 34447898999999999999999999988654 34666666543322
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 149 -----------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 149 -----------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
..|+..-..+-.+|.-.|+.|.|.+.++++.+.+..+..-|+-+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 33444444455567777778888888877777665454444444
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.34 E-value=3.9 Score=35.71 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=67.8
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc---------------CC
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA---------------GS 150 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~---------------~p 150 (296)
.++.+.+..+.. .-|.+.-..-..-|++.|++++|++.... -.+++.-...-.++++. ..
T Consensus 93 ~~l~E~~a~~~~---~sn~i~~l~aa~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 93 ASLYELVADSTD---GSNLIDLLLAAIIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHHhhcc---chhHHHHHHhhHHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 444555544433 22222222333568888888888888776 22333333333344443 22
Q ss_pred CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 151 TENVWL----TLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 151 ~~~~~~----~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
+-.|-+ +.|....-.+.+.+|.-+|++|.++-+++..+-+-. ++++|+.++++-..+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 333333 445555556679999999999988655544333322 7899998888876653
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=84.28 E-value=10 Score=38.03 Aligned_cols=92 Identities=12% Similarity=0.017 Sum_probs=61.0
Q ss_pred CCcee-eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 101 CDYAI-SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 101 ~p~~~-t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
.||.+ .+-.+...+.+.+++++|+..+++..... +-+....+.+=.++.+.|+.++|..+|++..
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------------SSSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 56544 35556677777777777777777765543 1244556666667778888888888888888
Q ss_pred hcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 180 MIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 180 ~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
...|.+..++... ..++|...|++-.+
T Consensus 182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7555555555554 56777777766543
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=84.00 E-value=21 Score=30.06 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..+-.+...|.+.|+.++|...|++..... |+. |. ...|..+-..|.+.|++++|...+++..+..|
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~----------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY--PFS----------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc----------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 467777788999999999999999987642 211 11 24667778899999999999999999998877
Q ss_pred CCcc---hhHHh----------------hHHHHHHHHHHHHhC
Q 044945 184 NNTG---AYVIL----------------INEALKDLLERMEQE 207 (296)
Q Consensus 184 ~~~~---~y~~l----------------~~~~a~~l~~~M~~~ 207 (296)
.+.. ++..+ ..++|.+.++...+.
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 5543 22222 246677778777654
No 114
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.93 E-value=19 Score=35.40 Aligned_cols=165 Identities=8% Similarity=0.029 Sum_probs=87.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccC-hhhhhhhhcc--------------------CCCHHHHHHHHHH-H
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKAR-HAPFSRIMHA--------------------GSTENVWLTLLSA-C 162 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~--------------------~p~~~~~~~Li~~-~ 162 (296)
.+|.-+-+.+-..|++++|+.+++.|.+. +|+ ...|.-+-.+ .|+..-..+-+.- .
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 57888888888889999999999988773 231 1222221111 5555443333332 3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhhhhH
Q 044945 163 RVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGE 234 (296)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~ 234 (296)
...|++++|...+.+-.+..|.-.+.|+-| ....|.+-|++-. .+.|+----.+.++..-++-.......
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv--kldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV--KLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh--cCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 347888888888888887777677778777 3444555554433 234442222222222222211111000
Q ss_pred H-HHHHHHhhcCCC---CCeEEEEecccCccchhhHHHHHhhhhcc
Q 044945 235 R-LALVFGIISTPD---GTTIRVIKNLPSLRGLRHGNKVVSKIVHR 276 (296)
Q Consensus 235 ~-~~~~~~~~~~~~---~~~~~ii~~~~k~g~~~~A~~~f~~m~~r 276 (296)
. ...+.. +++.. .-.+ ---|-..|+++-|+.-+++..+.
T Consensus 273 s~Y~rAl~-lrpn~A~a~gNl--a~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 273 SCYLRALN-LRPNHAVAHGNL--ACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHHHHh-cCCcchhhccce--EEEEeccccHHHHHHHHHHHHhc
Confidence 0 000111 11111 1111 33378889999998888766643
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.66 E-value=1 Score=44.59 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhh-hcccccccccccCCHHHHHhh-cccCCcccCCCce
Q 044945 27 MDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHF-DGGVDGLRPSRSGSVRKVFEI-MAVRDFLEYCDYA 104 (296)
Q Consensus 27 ~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~-~~~~~i~~y~k~g~~~~~f~~-M~~~~~~~~~p~~ 104 (296)
+.+|+.+.+.+.++....|-++....-.+..++.+.+.++...- .++-.|+||+|.|++++.|.- |.-.+- ....
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~---e~t~ 824 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGP---EATI 824 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCc---hhHH
Confidence 56666666666665554343333332222222222211111100 112225666666666222221 111111 1222
Q ss_pred eeHHHHHHHHhccCChhHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFF 127 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~ 127 (296)
+.|-+--.-+-++|++.+|.+++
T Consensus 825 ~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhhee
Confidence 45555555555566666665555
No 116
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.28 E-value=15 Score=27.98 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=47.2
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.++-..|+.++|..+|++-.+.|...+. -...+--+=..|..-|++++|..+|++.....|.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGAD-----------RRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4566789999999999999998875311 1234445667788999999999999998775443
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=82.45 E-value=27 Score=33.05 Aligned_cols=83 Identities=11% Similarity=0.000 Sum_probs=46.3
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCc-eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDY-AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE 152 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~-~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~ 152 (296)
+-+.+.++. .+-|+.+... .|+ .+.+=.+-.+|-+.|++.+|..++++-.... +-|.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------------p~dp 408 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------------PEDP 408 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------------CCCc
Confidence 445555555 4455554433 233 2445555567777777777777777665432 2355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
..|..|=.+|...|+..+|....-+.
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 55666666666666555555554444
No 118
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=82.32 E-value=9.9 Score=34.27 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=32.2
Q ss_pred cCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 117 NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 117 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
+.+.|+|.++|-+|.+. |..|| .+--+|=+.|.+.|.+|.|.++.+.+.+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~----------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~ 97 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETF----------EAHLTLGNLFRSRGEVDRAIRIHQTLLE 97 (389)
T ss_pred hcCcchHHHHHHHHHhc----Cchhh----------HHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 46889999999999882 22222 3333455556666666666666666654
No 119
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=82.11 E-value=11 Score=36.27 Aligned_cols=134 Identities=10% Similarity=0.002 Sum_probs=80.5
Q ss_pred HHHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhh--hhcccccccccccCCH---HHHHhhcc
Q 044945 19 GLAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIH--FDGGVDGLRPSRSGSV---RKVFEIMA 93 (296)
Q Consensus 19 ~~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~--~~~~~~i~~y~k~g~~---~~~f~~M~ 93 (296)
+|...++ +++|..+|.++..-- ... .|. .|.. ...+-+-..|++.|++ +..+++-.
T Consensus 250 ~y~~~~k-~~eAv~ly~~AL~i~-------------e~~----~G~-~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 250 VYRSLGK-YDEAVNLYEEALTIR-------------EEV----FGE-DHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHhcc-HHHHHHHHHHHHHHH-------------HHh----cCC-CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 4455566 888888888775411 000 011 1111 1233334678999999 33333211
Q ss_pred ---cCCcccCCCceee-HHHHHHHHhccCChhHHHHHHHHHHHc---CCccChhhhhhhhccCC-CHHHHHHHHHHHHhc
Q 044945 94 ---VRDFLEYCDYAIS-RNSITAGCGQNGPFDEGLKFFGQMLMA---KIKARHAPFSRIMHAGS-TENVWLTLLSACRVH 165 (296)
Q Consensus 94 ---~~~~~~~~p~~~t-~n~li~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~ty~~li~~~p-~~~~~~~Li~~~~~~ 165 (296)
++-.....|.+.+ .+-+..-|+..+++++|..+++.-.+. -..++ .| -..+++-|=..|-+.
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~----------~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED----------NVNLAKIYANLAELYLKM 380 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc----------chHHHHHHHHHHHHHHHh
Confidence 1111001233343 667788899999999999999865431 11111 11 236799999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 044945 166 RNVELAEKVADMILMI 181 (296)
Q Consensus 166 g~~~~A~~~~~~m~~~ 181 (296)
|++++|++++++..++
T Consensus 381 gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQI 396 (508)
T ss_pred cchhHHHHHHHHHHHH
Confidence 9999999999998754
No 120
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=82.10 E-value=14 Score=34.75 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=67.5
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE----NVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~----~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
+...|+-+-.+|.+.|++++|+..|++-.+. .||. .+|.-+-.+|.+.|+.++|...+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---------------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---------------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3457999999999999999999999986653 2442 45888899999999999999999998
Q ss_pred HhcCCCCcchhHHh----------hHHHHHHHHHHHHhCCCc
Q 044945 179 LMIEPNNTGAYVIL----------INEALKDLLERMEQEGYV 210 (296)
Q Consensus 179 ~~~~~~~~~~y~~l----------~~~~a~~l~~~M~~~g~~ 210 (296)
.+... ..|..+ ...+..++++...+.|..
T Consensus 139 Lelsn---~~f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 139 LRDYN---LKFSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHhcc---hhHHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 87521 123223 224566777777777753
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=81.98 E-value=21 Score=30.98 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=67.7
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
....+.|++ ...|.+-...+ .||.-.||.+=-+|.+.|++++|..-|.+-.+- .| -+..
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~------------~~p~ 169 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--AP------------NEPS 169 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--cc------------CCch
Confidence 344567888 77777776655 367799999999999999999999999988773 22 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
..|-|--.|.-.|+.++|+.++..-....+.|.
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 455555566667999999999988876555444
No 122
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=81.47 E-value=2.7 Score=32.41 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=38.2
Q ss_pred CCceeeHHHHHHHHhccCChhHHHHHHHHHHH-cCCccChhhhhhhhc
Q 044945 101 CDYAISRNSITAGCGQNGPFDEGLKFFGQMLM-AKIKARHAPFSRIMH 147 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~ty~~li~ 147 (296)
.||..+-.+++.+|+.+|++..|+++.+...+ .+++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 68888999999999999999999999999766 577655555555544
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=81.12 E-value=21 Score=32.00 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.....+-..+...|++++|...+++..+..|.+...+..+ .+++|..++.+....
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 3444555678899999999999999999888777666666 678888888776653
No 124
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=80.87 E-value=3 Score=24.16 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=22.3
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHH
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQML 131 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~ 131 (296)
+|+.|=..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888899999999999999999954
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=80.40 E-value=1.9 Score=30.18 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=41.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADM 177 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 177 (296)
..|-.+-.+|.+.|+.++|.++++. .. ..| .+....-.+-.+|.+.|++++|.++|++
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~------------~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LK--LDP------------SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHH------------CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCC------------CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4455589999999999999999988 22 221 1222333446678899999999999875
No 126
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.95 E-value=4.9 Score=22.49 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.+|..+=..|...|++++|...|++..+..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888999999999999999999887663
No 127
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=79.78 E-value=4 Score=23.60 Aligned_cols=26 Identities=19% Similarity=0.047 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
+|+.|=..|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999854
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=79.73 E-value=24 Score=28.33 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=49.2
Q ss_pred HHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 113 GCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 113 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
-+.+.|+.++|.++|+-...-. +-+..-|-.|=-.|-..|++++|...+.......|.|...+--+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D--------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD--------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 3556788888888887765532 12334455555555667788888888887777666555443333
Q ss_pred --------hHHHHHHHHHHHH
Q 044945 193 --------INEALKDLLERME 205 (296)
Q Consensus 193 --------~~~~a~~l~~~M~ 205 (296)
..+.|.+-|+.-.
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 5566666665443
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.70 E-value=9.4 Score=34.07 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=99.3
Q ss_pred HHhccCChhHHHHHHHHHHHc-CC--------------ccChhhhhhhhccCCCHHHHHHHHH---HHHhcCCHHHHHHH
Q 044945 113 GCGQNGPFDEGLKFFGQMLMA-KI--------------KARHAPFSRIMHAGSTENVWLTLLS---ACRVHRNVELAEKV 174 (296)
Q Consensus 113 ~~~~~g~~~~A~~l~~~M~~~-g~--------------~pd~~ty~~li~~~p~~~~~~~Li~---~~~~~g~~~~A~~~ 174 (296)
++-+.+.+-+|+++...|... .+ +-|.+--.+|+.-.|...+-..+|+ ...+.|+.+.|.+-
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 344556666777777666431 00 1122222333333443222223333 23489999999999
Q ss_pred HHHHHhcCC-CCcchhHHh-------hHHHHHHHHHHHHhCCCcCCCccce----eecchhhhhhhhhhhhHHHHHHHHh
Q 044945 175 ADMILMIEP-NNTGAYVIL-------INEALKDLLERMEQEGYVPDTKEVL----LDVEEEQKKNILYYHGERLALVFGI 242 (296)
Q Consensus 175 ~~~m~~~~~-~~~~~y~~l-------~~~~a~~l~~~M~~~g~~p~~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (296)
|+.-.+-+. .....|++. ..+.|.++..+..+.|++-.+..-. -.++.......+..|...+..++++
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 999877654 356778877 6789999999999999865432221 1122222233334444455556655
Q ss_pred hcCCCCCeEEEEecccCccchhhHHHHHhhhhcceEEEecCCccchh
Q 044945 243 ISTPDGTTIRVIKNLPSLRGLRHGNKVVSKIVHREMIVRDNRRFCRH 289 (296)
Q Consensus 243 ~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~m~~r~~~~~~~~~~~~~ 289 (296)
. ..-+-+.|+.+.|.+-+-.|+-|.----|+-+-|.+
T Consensus 247 K----------aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 247 K----------AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred h----------hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 3 233668899999999999998776554566665543
No 130
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.31 E-value=8.4 Score=21.26 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.|..+=..|.+.|++++|.+.|++..+..|.|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566678899999999999999998876643
No 131
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.40 E-value=6.8 Score=22.73 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 152 ENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 152 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
..+++.|-..|...|++++|+.++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999998865
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=77.22 E-value=25 Score=35.46 Aligned_cols=89 Identities=10% Similarity=0.187 Sum_probs=65.7
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.-.+--|-...-+.|+.++|+.+++...+. .| -+......+...+.+.+++++|....++.....|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~P------------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FP------------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CC------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 355666667777888888888888887663 22 2345666777788888888888888888887777
Q ss_pred CCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 184 NNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 184 ~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.+......+ ..++|..+|++...
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 666665555 67888888888876
No 133
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.00 E-value=16 Score=34.60 Aligned_cols=74 Identities=7% Similarity=-0.055 Sum_probs=50.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcC-CccChhhhhhhhcc-------------------CCCHHHH-HHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAK-IKARHAPFSRIMHA-------------------GSTENVW-LTLLSACR 163 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~li~~-------------------~p~~~~~-~~Li~~~~ 163 (296)
..|.+.|+.--+..-++.|..+|-+..+.| ..++++.|++++.- .||...| +-.+.-+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 568888888888888888888888888888 55677777766655 4554433 23444555
Q ss_pred hcCCHHHHHHHHHHH
Q 044945 164 VHRNVELAEKVADMI 178 (296)
Q Consensus 164 ~~g~~~~A~~~~~~m 178 (296)
+-|+=+.|..+|+.-
T Consensus 478 ~inde~naraLFets 492 (660)
T COG5107 478 RINDEENARALFETS 492 (660)
T ss_pred HhCcHHHHHHHHHHh
Confidence 566666666666643
No 134
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=76.93 E-value=43 Score=29.89 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 193 INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 193 ~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
...++..+++.+.+.|+++....+
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccc
Confidence 345666777777777777765554
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=76.90 E-value=15 Score=28.55 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=11.6
Q ss_pred HHHhccCChhHHHHHHHHHHHcC
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAK 134 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g 134 (296)
..+...|++++|.+.|+......
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444555555555555554433
No 136
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.63 E-value=18 Score=31.94 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=53.1
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.++..++..+...|+.+.+.+.++++.... +-|...|-.||.+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 457778888888888888888888887643 35889999999999999999999999999865
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=75.98 E-value=32 Score=26.66 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=43.8
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE----NVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.|..++..+. .++..++.+.++++.... |+. ...=.+-..+...|++++|...|+...+.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~---------------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY---------------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC---------------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 4666666663 777788888888877753 222 22223447788999999999999999886
Q ss_pred CC
Q 044945 182 EP 183 (296)
Q Consensus 182 ~~ 183 (296)
.+
T Consensus 78 ~~ 79 (145)
T PF09976_consen 78 AP 79 (145)
T ss_pred CC
Confidence 53
No 138
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.35 E-value=23 Score=34.30 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 152 ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 152 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
..+++-|=+.|.|.++.++|...+++-....|.|..+|.++ .++.|.+.|+ +..++.||..+.
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh--KaL~l~p~n~~~ 525 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH--KALALKPDNIFI 525 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH--HHHhcCCccHHH
Confidence 34577788899999999999999999988888888888888 6788888887 455778886443
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.30 E-value=37 Score=30.87 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc--------------------CCCHHHHHH-HHHHHHhcC
Q 044945 108 NSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA--------------------GSTENVWLT-LLSACRVHR 166 (296)
Q Consensus 108 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~--------------------~p~~~~~~~-Li~~~~~~g 166 (296)
+-|=.+|-+-|...+|.+-|+.-.+.--.||.+.| |-+. .|-.+||-. .-..+-.-|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfll--LskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLL--LSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHH--HHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45678999999999999999887665433332222 2111 444444422 222333445
Q ss_pred CHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCc
Q 044945 167 NVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYV 210 (296)
Q Consensus 167 ~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~ 210 (296)
+.++|.++++...+..+.|+.+-..+ ..|-|...+++..+.|+.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 55666666666555544444333222 668888888888888874
No 140
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.10 E-value=26 Score=32.78 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh----------hHHHHHHHHH
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL----------INEALKDLLE 202 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l----------~~~~a~~l~~ 202 (296)
+.+..+|--|++.|-..|++.+|.-.-+...+.-+.+..+-+.+ .-++|+++++
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 45777888888888888888888777666554444444444444 4466665554
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=74.23 E-value=12 Score=33.09 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh---------hHHHHHHHHHHHHhC
Q 044945 152 ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL---------INEALKDLLERMEQE 207 (296)
Q Consensus 152 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l---------~~~~a~~l~~~M~~~ 207 (296)
+.+|..++...-+.+.++.|..+|.+..+....+...|... ..+.|.++|+...+.
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~ 65 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999999985433333333333 345588899887654
No 142
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.00 E-value=5.7 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=24.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
.++|.|-..|...|+.++|++++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999999765
No 143
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.65 E-value=6 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=25.3
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHc
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMA 133 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~ 133 (296)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999999885
No 144
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=73.08 E-value=17 Score=39.02 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=99.9
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHc-CCccCh---hhhhhhhcc-------------------CCC-HHHHHHHH
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMA-KIKARH---APFSRIMHA-------------------GST-ENVWLTLL 159 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~---~ty~~li~~-------------------~p~-~~~~~~Li 159 (296)
.+.|---|.-..+.+++++|.+++++-... +++... -.|.++++- ..| ..+|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 356888888888888888888888886642 222221 223333333 334 46788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccc--eee-----c--ch
Q 044945 160 SACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEV--LLD-----V--EE 222 (296)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~--~~~-----~--~~ 222 (296)
..|.+.+..++|-++++.|.++-......|... ..++|..++.+-.+ ..|-.... ... + +.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcCC
Confidence 999999999999999999988643344455554 23455555544332 34442111 111 1 11
Q ss_pred hhhhhhhhhhhHHHHHHHHhhc-----CCCCCeEEEEecccCccchhhHHHHHhhhhcceEEEecC
Q 044945 223 EQKKNILYYHGERLALVFGIIS-----TPDGTTIRVIKNLPSLRGLRHGNKVVSKIVHREMIVRDN 283 (296)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ii~~~~k~g~~~~A~~~f~~m~~r~~~~~~~ 283 (296)
..+++.++ -|++. ...+... |++=.|.|+.+.++.+|++..+.++.+.+.
T Consensus 1616 aeRGRtlf---------Egll~ayPKRtDlW~VY--id~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1616 AERGRTLF---------EGLLSAYPKRTDLWSVY--IDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred chhhHHHH---------HHHHhhCccchhHHHHH--HHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 11111111 11111 1122233 677789999999999999999999887653
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=72.78 E-value=29 Score=27.83 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=49.3
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCc--eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDY--AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST 151 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~--~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~ 151 (296)
..|.+.|+. ...|++..+.+- .|+ ...|..+-..|.+.|+.++|.+.+.+..+. .| -+
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p------------~~ 105 (172)
T PRK02603 43 MSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NP------------KQ 105 (172)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cc------------cc
Confidence 455666777 666665543221 111 257888889999999999999999987763 22 23
Q ss_pred HHHHHHHHHHHHhcCCH
Q 044945 152 ENVWLTLLSACRVHRNV 168 (296)
Q Consensus 152 ~~~~~~Li~~~~~~g~~ 168 (296)
...+..+-..|...|+.
T Consensus 106 ~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 106 PSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 44555666666676663
No 146
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=72.63 E-value=56 Score=27.35 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=20.0
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHc
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMA 133 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~ 133 (296)
+|..+-..|-+.|++++|...|++..+.
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4566667777777777887777777653
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=72.50 E-value=27 Score=36.18 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=64.8
Q ss_pred CC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhh---hhhhhcc-----------------CC---------
Q 044945 101 CD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAP---FSRIMHA-----------------GS--------- 150 (296)
Q Consensus 101 ~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t---y~~li~~-----------------~p--------- 150 (296)
.| +...|-.||..|-..|++++|.++.++-.+ ..|+... |..++.- ..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence 55 334677888888888888888888775443 2233222 2222221 11
Q ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh-------hHHHHHHHHHHH
Q 044945 151 ----------TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL-------INEALKDLLERM 204 (296)
Q Consensus 151 ----------~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l-------~~~~a~~l~~~M 204 (296)
+....-.|-.+|-+.|+.++|..+++++.+..|.|+..-|-+ ..++|.++..+-
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KA 175 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKA 175 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 224555667777788999999999999999887776554444 456665555443
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=71.54 E-value=28 Score=33.74 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=54.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|-++--.....|++++|...|++..+.. |+...|..+-..|...|+.++|...+++-....|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---------------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE---------------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 567776555556799999999999987753 67788889999999999999999999998877775
Q ss_pred Cc
Q 044945 185 NT 186 (296)
Q Consensus 185 ~~ 186 (296)
+.
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 44
No 149
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.33 E-value=48 Score=28.53 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=35.7
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
-+|...|+. +.-+++-.+.|-. +.-+|.++-..|-+.|..+.|.+-|+.-.+
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 367777887 5555555443321 126788888888888888888888887655
No 150
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.18 E-value=10 Score=23.69 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=28.6
Q ss_pred HhccCChhHHHHHHHHHHHcCCccChhhhhhhhc
Q 044945 114 CGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMH 147 (296)
Q Consensus 114 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 147 (296)
--+.|.++++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3577888999999999999999988888776653
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.90 E-value=57 Score=28.73 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=41.4
Q ss_pred cCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 117 NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 117 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
.+.+.+|+-+|++|-++ . .|+..+-|-...++.-.||+++|+.++++...+.+.+.
T Consensus 186 gek~qdAfyifeE~s~k-~-------------~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-T-------------PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred chhhhhHHHHHHHHhcc-c-------------CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 44566666666666442 1 57777777777788889999999999999988765543
No 152
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.79 E-value=12 Score=20.75 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.+|..+=..|...|+.++|...|++..+..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567777889999999999999999877654
No 153
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=68.38 E-value=12 Score=37.58 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=51.1
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH 165 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~ 165 (296)
..+++.+..++. -.--|.-+-+-|+..|+++.|.++|.+- | .++--|++|.+.
T Consensus 752 i~ildniqdqk~-----~s~yy~~iadhyan~~dfe~ae~lf~e~---~-------------------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 752 ISILDNIQDQKT-----ASGYYGEIADHYANKGDFEIAEELFTEA---D-------------------LFKDAIDMYGKA 804 (1636)
T ss_pred HhHHHHhhhhcc-----ccccchHHHHHhccchhHHHHHHHHHhc---c-------------------hhHHHHHHHhcc
Confidence 566677776655 0022778889999999999999999652 2 256678999999
Q ss_pred CCHHHHHHHHHHHH
Q 044945 166 RNVELAEKVADMIL 179 (296)
Q Consensus 166 g~~~~A~~~~~~m~ 179 (296)
|+|++|.++-++..
T Consensus 805 ~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH 818 (1636)
T ss_pred ccHHHHHHHHHHhc
Confidence 99999999988764
No 154
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.60 E-value=21 Score=32.20 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.||..+++.||+.+.+.|+..+|..+.-.|...+.
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988887776543
No 155
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=66.73 E-value=57 Score=31.63 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=68.1
Q ss_pred CCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 101 CDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.|+ .+|-..++.--|..-+..|..+|.+..+.+..+ .++.+++|+|.-||. ++.+-|.++|+-=.+
T Consensus 364 ~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~------------hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 364 DLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR------------HHVFVAAALMEYYCS-KDKETAFRIFELGLK 429 (656)
T ss_pred CCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc------------chhhHHHHHHHHHhc-CChhHHHHHHHHHHH
Confidence 455 678889999899999999999999999988754 477778888877775 566778888875433
Q ss_pred cCCCCcchhHHh---------hHHHHHHHHHHHHhCCCcCC
Q 044945 181 IEPNNTGAYVIL---------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 181 ~~~~~~~~y~~l---------~~~~a~~l~~~M~~~g~~p~ 212 (296)
+-+ |...|..- .-..|..||++...+++.||
T Consensus 430 kf~-d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 430 KFG-DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred hcC-CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 322 33333322 33556677777777766665
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.39 E-value=21 Score=31.72 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=50.5
Q ss_pred hccCChhHHHHHHHHHHHcCCccChhhhhhhhcc----------------------CCCHHHHHHHHHHHHhcCCHHHHH
Q 044945 115 GQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA----------------------GSTENVWLTLLSACRVHRNVELAE 172 (296)
Q Consensus 115 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~----------------------~p~~~~~~~Li~~~~~~g~~~~A~ 172 (296)
.+++++.+|+..|.+-++ +.|...+|-+-=.+ +.-..+|..|=-+|.-.|+.++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 455666666666666554 34444444332222 223567888888899999999999
Q ss_pred HHHHHHHhcCCCCcchhHHh
Q 044945 173 KVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 173 ~~~~~m~~~~~~~~~~y~~l 192 (296)
+.|++-.+..|.|.+.+..|
T Consensus 170 ~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhccCCCcHHHHHHH
Confidence 99999888888887666655
No 157
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.25 E-value=21 Score=34.03 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=57.5
Q ss_pred cCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHH
Q 044945 82 SGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTL 158 (296)
Q Consensus 82 ~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~L 158 (296)
-|++ +++|++..+ |.||.-.|++.|+-=-+-..++.|..+++..+-. .|++.+|--.
T Consensus 154 LgNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---------------HP~v~~wiky 213 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---------------HPKVSNWIKY 213 (677)
T ss_pred hcccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---------------cccHHHHHHH
Confidence 3555 888887643 5888899999999999999999999999987653 4566666555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 044945 159 LSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~ 180 (296)
..-=-++|++..|..+++...+
T Consensus 214 arFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 5555566666666666665543
No 158
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=66.11 E-value=83 Score=32.24 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=62.0
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|++ |++ ++++.+.-+++- -+...|-+|=..|=+.|+.++++..+ |......| -|..
T Consensus 148 ~lfar-g~~eeA~~i~~EvIkqdp----~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p------------~d~e 208 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIKQDP----RNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNP------------KDYE 208 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCC------------CChH
Confidence 45666 777 888888776653 23378888888888889888887654 45555554 3556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
-|..+=+.....|+++.|.-+|.+..+..|+|
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 67666666677777777777777776666554
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=65.62 E-value=16 Score=29.40 Aligned_cols=50 Identities=8% Similarity=-0.057 Sum_probs=41.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 159 LSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
=.-+...|++++|+++|+-+....|.+...|..| .+++|...+..-....
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456788999999999999999888888888887 7889988888776654
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.27 E-value=58 Score=28.49 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=66.9
Q ss_pred cCChhHHHHHHHHHHHcCCccChhhhh---hhhcc------------------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044945 117 NGPFDEGLKFFGQMLMAKIKARHAPFS---RIMHA------------------GSTENVWLTLLSACRVHRNVELAEKVA 175 (296)
Q Consensus 117 ~g~~~~A~~l~~~M~~~g~~pd~~ty~---~li~~------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~ 175 (296)
.|..++|.++++...+.. +-|.++|- +++.+ .-|...|--|-..|...|.++.|--++
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 677889999999998876 44666664 33333 668899999999999999999999999
Q ss_pred HHHHhcCCCCcchhHHh-----------hHHHHHHHHHHHHh
Q 044945 176 DMILMIEPNNTGAYVIL-----------INEALKDLLERMEQ 206 (296)
Q Consensus 176 ~~m~~~~~~~~~~y~~l-----------~~~~a~~l~~~M~~ 206 (296)
+++.=..|.+...+.-+ ..+-+.+.+.+=.+
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99987777776555544 45556666655443
No 161
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.47 E-value=19 Score=18.27 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
+|..+-..|...|+.++|...|+...+..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 566777788899999999999998876544
No 162
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.99 E-value=37 Score=32.49 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=74.1
Q ss_pred cccCCH---HHHHhhcccCCcccCCCc-eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHH
Q 044945 80 SRSGSV---RKVFEIMAVRDFLEYCDY-AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVW 155 (296)
Q Consensus 80 ~k~g~~---~~~f~~M~~~~~~~~~p~-~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~ 155 (296)
-|.+++ +..|++-.++ -|+ .-.||-.-..+...+++++|.+.|+.-.+. +|+.. -+.+ .+-..+-
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-----FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~--~~~v--~~~plV~ 507 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-----FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREH--LIIV--NAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccc--cccc--cchhhhh
Confidence 455566 8888887764 222 246888888899999999999999886652 23210 0001 1112222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHH
Q 044945 156 LTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 156 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M 204 (296)
-+++-.-=+ +++..|.+++++-.+.+|+....|..| ..++|.++|++=
T Consensus 508 Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 508 KALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222221122 899999999999999988888888888 678888888753
No 163
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=61.90 E-value=45 Score=32.24 Aligned_cols=26 Identities=8% Similarity=0.183 Sum_probs=15.5
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHH
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQML 131 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~ 131 (296)
+|+-|=..|-+.|+.++|+++|++-.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45556666666666666666666543
No 164
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.99 E-value=34 Score=31.38 Aligned_cols=43 Identities=21% Similarity=-0.029 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.-|.+.+| +-.+++..|+..+|+++|-.+...+.+|..+|.++
T Consensus 391 NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 391 NDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred CcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 33455554 45688889999999999988866555677888777
No 165
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=60.93 E-value=33 Score=23.11 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.+|+.+=..|...|++++|...|++..+.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888889999999999999999988754
No 166
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=59.50 E-value=81 Score=25.68 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=52.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
..|.-+-.-|++.|+.++|++.|.++.+....| ..-...+-.+|....-.|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-----------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP-----------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-----------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 357788899999999999999999998865544 23445677888888899999999888887754
No 167
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.33 E-value=13 Score=20.26 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=20.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 160 SACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..|.+.|+.++|.+.|+++.+.-|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 456778999999999999987655
No 168
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=58.73 E-value=1.2e+02 Score=30.14 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----chhH---Hh--hHHHHHHHHHHHHhCCCcCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNT----GAYV---IL--INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~y~---~l--~~~~a~~l~~~M~~~g~~p~~ 213 (296)
.|..+-+.|-..|+++.|..+|++-.+-.-+.+ ..|. -+ ..+.....+..|.++-..|..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 588888999999999999999998866431111 1121 11 334455556778888778865
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=58.57 E-value=49 Score=31.31 Aligned_cols=59 Identities=19% Similarity=0.063 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hhHHh--------hHHHHHHHHHHHHhC
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG---AYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+.+...|+-+=.+|.+.|++++|...|++-.+..|.+.. +|..+ +.++|...+++-.+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446788999999999999999999999999988887653 24444 677887777776664
No 170
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.53 E-value=1e+02 Score=27.74 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=25.5
Q ss_pred eeehHHHHHhh-cccHHHHHHHHHHhHhcccC
Q 044945 13 NVELSNGLAGC-NEFMDKANGITDRFEERAVS 43 (296)
Q Consensus 13 ~vs~n~~~~~~-~~~~~~A~~~f~~M~~~~~~ 43 (296)
.+.||..++-+ .+....|++...++.++|+.
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 46789888887 33389999999999999986
No 171
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=57.71 E-value=20 Score=18.89 Aligned_cols=22 Identities=23% Similarity=0.213 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 044945 155 WLTLLSACRVHRNVELAEKVAD 176 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~ 176 (296)
...|-..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456678899999999999876
No 172
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.48 E-value=15 Score=24.33 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
.=-+|.||.+.|++++|.+...++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34579999999999999999998865
No 173
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=55.35 E-value=62 Score=32.13 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=72.3
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccC---hhhhhhhhcc----------------------------------
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKAR---HAPFSRIMHA---------------------------------- 148 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd---~~ty~~li~~---------------------------------- 148 (296)
.|-.+-.-|-.+|+++.|..+|++-.....+-- ..+|...-..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 478888888888999988888887654333221 1222211111
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-CcchhHHh----------------------------
Q 044945 149 -----GSTENVWLTLLSACRVHRNVELAEKVADMILMIEP--N-NTGAYVIL---------------------------- 192 (296)
Q Consensus 149 -----~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--~-~~~~y~~l---------------------------- 192 (296)
.-+..+|+..++.--..|-++.-..+++.+.+... | -+.-|..+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 23556788888888888888888888888876532 2 12223333
Q ss_pred ----------------hHHHHHHHHHHHHhCCCcCC-Cccc
Q 044945 193 ----------------INEALKDLLERMEQEGYVPD-TKEV 216 (296)
Q Consensus 193 ----------------~~~~a~~l~~~M~~~g~~p~-~~t~ 216 (296)
..+.|.+||++-.+ |+.|. ..|.
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKti 588 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTI 588 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 57999999999888 88886 4444
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=54.32 E-value=24 Score=35.18 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=16.5
Q ss_pred EecccCccchhhHHHHHhhhhcce
Q 044945 254 IKNLPSLRGLRHGNKVVSKIVHRE 277 (296)
Q Consensus 254 i~~~~k~g~~~~A~~~f~~m~~r~ 277 (296)
|..+.|.|+.-+|-+++.+|.+|.
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHH
Confidence 455667777777777777777653
No 175
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=54.14 E-value=93 Score=31.92 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=64.5
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
-.|--+..+|.+.|+..+|+.+|......-. .-+...|--+=.+|-..|..++|...++......|.
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-------------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREG-------------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-------------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3566788889999999999999988866432 124667777778888888899999998888877765
Q ss_pred Ccch---hHHh-----hHHHHHHHHHHHH
Q 044945 185 NTGA---YVIL-----INEALKDLLERME 205 (296)
Q Consensus 185 ~~~~---y~~l-----~~~~a~~l~~~M~ 205 (296)
+... -..+ ..++|.+.++.|.
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 4433 2233 6678877777765
No 176
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.68 E-value=10 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=19.8
Q ss_pred ccCChhHHHHHHHHHHHcCCccCh
Q 044945 116 QNGPFDEGLKFFGQMLMAKIKARH 139 (296)
Q Consensus 116 ~~g~~~~A~~l~~~M~~~g~~pd~ 139 (296)
..|.-.+|..+|+.|.++|-+||.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc
Confidence 345667899999999999998864
No 177
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.75 E-value=34 Score=24.17 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=29.8
Q ss_pred cccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 044945 92 MAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAK 134 (296)
Q Consensus 92 M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g 134 (296)
|++-++.+|.|+ +++-+.+..-.++|+++++-|.++|
T Consensus 25 ~~~~~~~gy~Pt------V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 25 EPKIDFSGYNPT------VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred cccCCcCCCCch------HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 455566666775 5677888999999999999999988
No 178
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.51 E-value=23 Score=26.44 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
.++-....+.+. |..|+.-|-..|..++|++++.+...
T Consensus 30 ~~~e~~L~~~~~---------~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 30 EEVEEVLKEHGK---------YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHcCC---------HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455555566666 99999999999999999999999877
No 179
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=51.28 E-value=1.1e+02 Score=24.05 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=48.4
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.|+.=... -+.|+.++|.+.|+.+..+= +.+ .-....---|+.+|.+.|++++|...+++..+..|.
T Consensus 13 ly~~a~~~-l~~~~Y~~A~~~le~L~~ry-P~g----------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 13 LYQEAQEA-LQKGNYEEAIKQLEALDTRY-PFG----------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHhcC-CCC----------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34444333 46789999999999987742 111 123344556899999999999999999999988774
No 180
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.27 E-value=27 Score=26.01 Aligned_cols=65 Identities=3% Similarity=-0.113 Sum_probs=41.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 108 NSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 108 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
++|+.+|... +......+++. ||.......-..--...-|..|+..|...|..++|.+++.++.+
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~-------~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRL-------PNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHcc-------CCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5677777777 55555555542 23222222211111223489999999999999999999998876
No 181
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=51.22 E-value=57 Score=24.25 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.|+..+..+-+.+|.|.+++.-|.++|+.++.+.......|..+
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 68999999999999999999999999999987644333355543
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=50.93 E-value=1.6e+02 Score=28.68 Aligned_cols=103 Identities=11% Similarity=0.048 Sum_probs=63.7
Q ss_pred CCceeeHHHHHHHHhccCC-----hhHHHHHHHHHHHcCCccCh-hhhhhhhcc--------------------------
Q 044945 101 CDYAISRNSITAGCGQNGP-----FDEGLKFFGQMLMAKIKARH-APFSRIMHA-------------------------- 148 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~-----~~~A~~l~~~M~~~g~~pd~-~ty~~li~~-------------------------- 148 (296)
.+|...|...+.|.....+ .++|.++|++-.+. .||- ..|..+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566889999988665433 66999999988763 3442 111111000
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 149 -----GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 149 -----~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
..+...|-++--.+...|++++|...+++..+..+ +..+|..+ +.++|.+.+++=.+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22345666664455566888888888888877765 55566666 56777766665443
No 183
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=54 Score=30.15 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=11.3
Q ss_pred HHHHhccCChhHHHHHHHHH
Q 044945 111 TAGCGQNGPFDEGLKFFGQM 130 (296)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~M 130 (296)
-.+++--|...+|+++|-+.
T Consensus 400 AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHhcChHHHHHHHhhh
Confidence 35555566666666666443
No 184
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.26 E-value=25 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 161 ACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 161 ~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
|+.|-|+.++|.+..+.+.+.+|.|.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 78999999999999999999988765
No 185
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=48.40 E-value=21 Score=20.31 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 044945 150 STENVWLTLLSACRVHRNVELAE 172 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~ 172 (296)
-|...|+-|=..|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 36789999999999999999986
No 186
>PLN02789 farnesyltranstransferase
Probab=48.18 E-value=2.1e+02 Score=25.80 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=10.2
Q ss_pred HhccC-ChhHHHHHHHHHHH
Q 044945 114 CGQNG-PFDEGLKFFGQMLM 132 (296)
Q Consensus 114 ~~~~g-~~~~A~~l~~~M~~ 132 (296)
+...| ..+++++.++++.+
T Consensus 81 L~~L~~~l~eeL~~~~~~i~ 100 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAE 100 (320)
T ss_pred HHHcchhHHHHHHHHHHHHH
Confidence 33344 35666666666554
No 187
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.00 E-value=1e+02 Score=22.97 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.||...|-+| +=.|.|.-+.++.-+.+|...
T Consensus 67 ~pdlepw~AL--ce~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 67 YPDLEPWLAL--CEWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred CchHHHHHHH--HHHhhccHHHHHHHHHHHHhC
Confidence 3555555554 222445544444444444433
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=47.56 E-value=65 Score=32.06 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 156 LTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 156 ~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.++++.....|+|.+|..+-+..++.
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccc
Confidence 35667777777777777777766553
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=47.41 E-value=1.1e+02 Score=27.19 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=68.3
Q ss_pred HHHHhccCChhHHHHHHHHHHHcCC-ccChhhhhhhhcc--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 111 TAGCGQNGPFDEGLKFFGQMLMAKI-KARHAPFSRIMHA--------GSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~li~~--------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
...|...|-.+.+ +..+...-- .|+..+-..++.. +-|...|-.|=..|...|+.++|...|..-.+.
T Consensus 109 ~g~y~~vg~~~q~---~~r~~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 109 LGLYQAVGAPEQP---ADRLADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred hhhhhhcCCcccc---chhhhcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 3455566666665 334433322 2566666666665 558899999999999999999999999999998
Q ss_pred CCCCcchhHHh-----------hHHHHHHHHHHHHhC
Q 044945 182 EPNNTGAYVIL-----------INEALKDLLERMEQE 207 (296)
Q Consensus 182 ~~~~~~~y~~l-----------~~~~a~~l~~~M~~~ 207 (296)
.|+|...+..+ ...++..+|++....
T Consensus 186 ~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 186 AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 88887766666 567777888877654
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.20 E-value=92 Score=27.55 Aligned_cols=111 Identities=14% Similarity=-0.010 Sum_probs=66.1
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH 165 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~ 165 (296)
..++.+..+++- .-+.+.-..|.+.--+.|+++.|...|++-.+..-+.|..+++.++.. . .-..|.-.
T Consensus 197 ~d~~~~vi~~~~---e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~-n-------~a~i~lg~ 265 (366)
T KOG2796|consen 197 VDAYHSVIKYYP---EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM-N-------SAFLHLGQ 265 (366)
T ss_pred HHHHHHHHHhCC---cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh-h-------hhhheecc
Confidence 555555555554 334455555555666789999999999988876666777777766653 0 01123344
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 166 RNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.+..+|...+.++.+.++.|++.-|.- ...+|.+..+.|+..
T Consensus 266 nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566667777777766655554433322 445555555555543
No 191
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=46.99 E-value=1.4e+02 Score=23.52 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=41.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACR-------VHRNVELAEKVADM 177 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~-------~~g~~~~A~~~~~~ 177 (296)
.+|..+=..|.+.|+.++|++.+++-.+. .|+ ...+++.+-..|. +.|++++|...+++
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~------------~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALER--NPF------------LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC------------cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 47888889999999999999999888763 232 2344555555555 77887755555443
No 192
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=46.74 E-value=1.9e+02 Score=24.90 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=64.0
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
|-+..|+.+-+.+.+.+|+.+.++=++.. +.|.-.=-.|++.||-.|+|++|..-++-.-+..|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--------------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--------------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--------------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 45667788899999999999988877653 2455666688999999999999998888776665544
Q ss_pred c---chhHHhhHHHHHHHHHHHHhCCCcCC
Q 044945 186 T---GAYVILINEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 186 ~---~~y~~l~~~~a~~l~~~M~~~g~~p~ 212 (296)
. ..|..+. .++.+.++...-|-.|+
T Consensus 69 t~~a~lyr~li--r~ea~R~evfag~~~Pg 96 (273)
T COG4455 69 TVGASLYRHLI--RCEAARNEVFAGGAVPG 96 (273)
T ss_pred chHHHHHHHHH--HHHHHHHHHhccCCCCC
Confidence 3 3343332 22233455566666776
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=46.74 E-value=55 Score=26.53 Aligned_cols=46 Identities=13% Similarity=-0.028 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 162 CRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 162 ~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+-..|++++|+++|.-+.-.++.|...|..| .+++|..++..-...
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467999999999999988777787777766 678888888765443
No 194
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=46.58 E-value=1.8e+02 Score=28.43 Aligned_cols=122 Identities=10% Similarity=0.040 Sum_probs=87.6
Q ss_pred HHHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH--HHHHhh-cccC
Q 044945 19 GLAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV--RKVFEI-MAVR 95 (296)
Q Consensus 19 ~~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~--~~~f~~-M~~~ 95 (296)
.+.+..+ ++.|+.+|.+.++.+.. .|..+..++++.-||..... .++|+- |+.-
T Consensus 375 ~irR~eG-lkaaR~iF~kaR~~~r~----------------------~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 375 FIRRAEG-LKAARKIFKKAREDKRT----------------------RHHVFVAAALMEYYCSKDKETAFRIFELGLKKF 431 (656)
T ss_pred HHHHhhh-HHHHHHHHHHHhhccCC----------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHhc
Confidence 3444455 88899999888875432 23334455666667766555 888875 4332
Q ss_pred CcccCCCceee-HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044945 96 DFLEYCDYAIS-RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKV 174 (296)
Q Consensus 96 ~~~~~~p~~~t-~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~ 174 (296)
||... =+.-++-+..-++-..|..+|+.....++.|| -...+|..+|+-=++-|++..+.++
T Consensus 432 ------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~-----------ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 432 ------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD-----------KSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred ------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh-----------hhHHHHHHHHHHHHhcccHHHHHHH
Confidence 22133 35667788888999999999999988877552 3568999999999999999999999
Q ss_pred HHHHHh
Q 044945 175 ADMILM 180 (296)
Q Consensus 175 ~~~m~~ 180 (296)
-+++..
T Consensus 495 ekR~~~ 500 (656)
T KOG1914|consen 495 EKRRFT 500 (656)
T ss_pred HHHHHH
Confidence 888764
No 195
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=46.45 E-value=99 Score=23.58 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=19.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAK 134 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g 134 (296)
..-..+|..+-+.+.......+++.+...|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~ 37 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN 37 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC
Confidence 444566666666667777777777666554
No 196
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=45.87 E-value=37 Score=20.83 Aligned_cols=26 Identities=4% Similarity=0.124 Sum_probs=22.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCC
Q 044945 110 ITAGCGQNGPFDEGLKFFGQMLMAKI 135 (296)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~M~~~g~ 135 (296)
|-.+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 45789999999999999999987553
No 197
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.70 E-value=30 Score=18.40 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchhH
Q 044945 166 RNVELAEKVADMILMIEPNNTGAYV 190 (296)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~y~ 190 (296)
|..+.|..+|+++.+..|.+...|.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHH
Confidence 5678899999998876665555454
No 198
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=44.71 E-value=67 Score=23.67 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
.|+..+-.+-+.+|.|.+++.-|.++|+..+.+...+...|..
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~ 81 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPY 81 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHH
Confidence 6888899999999999999999999999887554323334543
No 199
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.09 E-value=41 Score=30.04 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhh
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIM 146 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li 146 (296)
||.-|..-.+.|++++|++|++|-++.|+.--..||-.-+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 8999999999999999999999999999876666665444
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.01 E-value=1.6e+02 Score=25.71 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=59.9
Q ss_pred cccccCCH---HHHHhhcccCCc-ccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDF-LEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~-~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
.+.+.|+. ...|+...+..- ..|.|+ .+--+-..|...|+.++|...|....+.- |+.. ....
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~--A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~---------~~~d 218 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPN--ANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSP---------KAAD 218 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCc---------chhH
Confidence 33556777 556666654311 011333 33445678889999999999999997642 2110 1122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.+--+...|.+.|+.++|...++...+.-|..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 23334456778999999999999998876643
No 201
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=42.76 E-value=1.6e+02 Score=28.36 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=58.1
Q ss_pred cccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHH
Q 044945 92 MAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELA 171 (296)
Q Consensus 92 M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A 171 (296)
+..++. .|-...=--+-.+.-+.|+.++|.+.|++|.+.- |. .-+..+.-.||.++-..++..++
T Consensus 250 ~~~Rdt---~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~----------~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 250 WHRRDT---NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PN----------LDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hhcccc---chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cc----------cchhhHHHHHHHHHHhcCCHHHH
Confidence 344444 3333444446666677899999999999997642 10 12344666789999999999999
Q ss_pred HHHHHHHHhcCCCC--cchhHHh
Q 044945 172 EKVADMILMIEPNN--TGAYVIL 192 (296)
Q Consensus 172 ~~~~~~m~~~~~~~--~~~y~~l 192 (296)
..++.+=.+...+. ..+|+..
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHH
Confidence 99999865443222 3556655
No 202
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=42.20 E-value=1.5e+02 Score=24.08 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=40.5
Q ss_pred HHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 87 KVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 87 ~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
+....+.+.++ .|+...|..+|+.+.+.|+.. .+.++...++-||.......+-.
T Consensus 15 EYirSl~~~~i---~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs 69 (167)
T PF07035_consen 15 EYIRSLNQHNI---PVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLS 69 (167)
T ss_pred HHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHH
Confidence 34445556677 888889999999999999854 45677778888877766655544
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=42.11 E-value=1.7e+02 Score=27.19 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=38.1
Q ss_pred HHHHhhcccCCcccCCCceeeHH---HHHHHHhc---cCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRN---SITAGCGQ---NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n---~li~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
-++++.|+.... .+-.-+-+ -..-++.| .|+-++|++++.......-.++.-||+.+-..
T Consensus 161 I~Lve~l~~~p~---~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 161 IKLVETLEALPT---CDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHHHhhccCc---cchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 777777765311 01011222 23345566 89999999999997776666777888766554
No 204
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=41.29 E-value=1.7e+02 Score=29.52 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=49.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 044945 108 NSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG 187 (296)
Q Consensus 108 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 187 (296)
-.+-..+-..|-...|..+|++... |--+|..|+..|.-.+|+.+..+-.+ .+++..
T Consensus 402 ~~laell~slGitksAl~I~Erlem----------------------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~ 458 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM----------------------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPR 458 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH----------------------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcch
Confidence 3456677778888888888877533 55666777777777777777776665 455677
Q ss_pred hhHHh--------hHHHHHHHHHH
Q 044945 188 AYVIL--------INEALKDLLER 203 (296)
Q Consensus 188 ~y~~l--------~~~~a~~l~~~ 203 (296)
.|.++ .+++|.++++.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNY 482 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhh
Confidence 77776 45555555544
No 205
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.99 E-value=1.8e+02 Score=28.58 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=64.6
Q ss_pred HHHHHHHHhccCChhHHHHHHH--------HHHHcCCccChhhhhhhhcc----------------------CCCH----
Q 044945 107 RNSITAGCGQNGPFDEGLKFFG--------QMLMAKIKARHAPFSRIMHA----------------------GSTE---- 152 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~--------~M~~~g~~pd~~ty~~li~~----------------------~p~~---- 152 (296)
-=+++.--...|.++.|.+++. ...+.+..|..|.+---+.. .+..
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 3345666778899999999999 77777788877665433332 2222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------chhHHhhHHHHHHHHH
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNT-------GAYVILINEALKDLLE 202 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~y~~l~~~~a~~l~~ 202 (296)
.+|--+...--++|+-++|..+++++.+..|+|+ ++|..+..+.|+.+-.
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k 515 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSK 515 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 3344444455578999999999999998777664 4455556677765543
No 206
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.11 E-value=1.4e+02 Score=29.10 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=57.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.++|-|=+.|-+.++.++|+..|+.-.... +-|..+++++=-.|...|+++.|...|++-.-..|.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 357778889999999999999998865532 357788888888889999999999999998877776
Q ss_pred Ccchh
Q 044945 185 NTGAY 189 (296)
Q Consensus 185 ~~~~y 189 (296)
|..+-
T Consensus 522 n~~~~ 526 (611)
T KOG1173|consen 522 NIFIS 526 (611)
T ss_pred cHHHH
Confidence 65433
No 207
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.39 E-value=96 Score=23.48 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHhhHHHHHHHHHHHHhCCC
Q 044945 157 TLLSACRVHRNVELAEKVADMILMIEPNNTGAYVILINEALKDLLERMEQEGY 209 (296)
Q Consensus 157 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l~~~~a~~l~~~M~~~g~ 209 (296)
++|+-+.+|.-.++|..+.+-|.+++--+. +.|..|-..+.+.|+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEIt~--------e~A~eLr~~L~~kGv 110 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEITP--------EEAKELRSILVKKGV 110 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhhH
Confidence 567888999999999999999998764332 566677777777766
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=39.11 E-value=1.4e+02 Score=25.58 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=43.6
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..+.+.|+.++|.+.|++....- |+.. + .++ ..--|..+|.+.|+.++|...|++..+..|.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~y--P~s~-~------a~~--a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRY--PFGP-Y------SQQ--VQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCh-H------HHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 44566899999999999987742 2110 0 000 1124567889999999999999999987664
No 209
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.79 E-value=2.1e+02 Score=23.08 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=41.7
Q ss_pred HhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 114 CGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 114 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
=.+.++.+++..++..|.- +.|. .|...++-..+ +.+.|+|.+|.++|+++.+..+.
T Consensus 20 al~~~~~~D~e~lL~ALrv--LRP~----------~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV--LRPE----------FPELDLFDGWL--HIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHccCChHHHHHHHHHHHH--hCCC----------chHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCC
Confidence 3466799999999999876 3343 24555666554 56889999999999998776543
No 210
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.33 E-value=52 Score=21.72 Aligned_cols=31 Identities=10% Similarity=-0.102 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.|-.-.--+|.||...|++++|.+..+++.+
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555566789999999999999999988864
No 211
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.55 E-value=39 Score=27.75 Aligned_cols=32 Identities=6% Similarity=-0.057 Sum_probs=29.9
Q ss_pred CCceeeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 101 CDYAISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
.|+...|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 68889999999999999999999999999876
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=37.09 E-value=81 Score=32.97 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=68.4
Q ss_pred ccccccCCH-HHHHhhccc--------CCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCcc-Chhhhhhh
Q 044945 77 LRPSRSGSV-RKVFEIMAV--------RDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKA-RHAPFSRI 145 (296)
Q Consensus 77 ~~y~k~g~~-~~~f~~M~~--------~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~l 145 (296)
.+|+--|++ +++. +|.+ .++ .| |.-.+-...+.|++...++.|+.+. .......| -...++-+
T Consensus 493 paf~~LG~iYrd~~-Dm~RA~kCf~KAFeL---Datdaeaaaa~adtyae~~~we~a~~I~--l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSD-DMKRAKKCFDKAFEL---DATDAEAAAASADTYAEESTWEEAFEIC--LRAAQKAPAFACKENWV 566 (1238)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcC---CchhhhhHHHHHHHhhccccHHHHHHHH--HHHhhhchHHHHHhhhh
Confidence 467777777 6665 4432 122 33 4467999999999999999999983 22111111 11111111
Q ss_pred hcc-----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 146 MHA-----------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 146 i~~-----------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
-.+ +-|...|..|..+|.++|+...|.++|.+....+|.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 122 557889999999999999999999999988776553
No 213
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.41 E-value=3.8e+02 Score=25.43 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=57.5
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhh---hhcc-------------------CCC-HHHHHHHH
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSR---IMHA-------------------GST-ENVWLTLL 159 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~---li~~-------------------~p~-~~~~~~Li 159 (296)
+.-+|--|+++|--.|++.+|.-+-++-.+. +.-+.-|.+- .+.. .|+ ...-+.+-
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 4488999999999999999998776653321 1112222221 1222 555 34566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 160 SACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
..+...|+.+++..+++.-....+ |.+-.+.|
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~L 477 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHL 477 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhcc-ccHHHHHH
Confidence 788899999999999988765443 44444444
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=36.13 E-value=1.9e+02 Score=29.01 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=18.4
Q ss_pred ecccCccchhhHHHHHhhhhcceEE
Q 044945 255 KNLPSLRGLRHGNKVVSKIVHREMI 279 (296)
Q Consensus 255 ~~~~k~g~~~~A~~~f~~m~~r~~~ 279 (296)
+.|-|.|+-.+|..+++++....+.
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhhhhh
Confidence 4466888888888888888754443
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=35.87 E-value=96 Score=28.00 Aligned_cols=73 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred cccccccccccCCHHHHHhhcc-cCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCC
Q 044945 72 GGVDGLRPSRSGSVRKVFEIMA-VRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGS 150 (296)
Q Consensus 72 ~~~~i~~y~k~g~~~~~f~~M~-~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p 150 (296)
|-+.+.+|++.|++.++..-.. ++.. +-|-..+..|-+.|...+|......+ |
T Consensus 211 w~lki~aLa~~~~w~eL~~fa~skKsP-------IGyepFv~~~~~~~~~~eA~~yI~k~-------------------~ 264 (319)
T PF04840_consen 211 WWLKIKALAENKDWDELEKFAKSKKSP-------IGYEPFVEACLKYGNKKEASKYIPKI-------------------P 264 (319)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhCCCCC-------CChHHHHHHHHHCCCHHHHHHHHHhC-------------------C
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Q 044945 151 TENVWLTLLSACRVHRNVELAEKV 174 (296)
Q Consensus 151 ~~~~~~~Li~~~~~~g~~~~A~~~ 174 (296)
+ .--+..|.++|.+.+|-+.
T Consensus 265 ~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 265 D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred h----HHHHHHHHHCCCHHHHHHH
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=35.78 E-value=1.7e+02 Score=24.15 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=42.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 113 GCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 113 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.+.+.|+.++|.+.|++....- |+. .--....-.+..+|.+.|+.++|...++...+.-|.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~--P~s---------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRY--PNS---------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH---TTS---------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--CCC---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4567899999999999998752 111 011233446778999999999999999999887664
No 217
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=35.49 E-value=3.3e+02 Score=27.19 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=60.5
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcC-CccChhhhhhhhcc-----------------------CCCH---HH-HH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAK-IKARHAPFSRIMHA-----------------------GSTE---NV-WL 156 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~li~~-----------------------~p~~---~~-~~ 156 (296)
..|....-++--.|....|..+.++..+.- -.|+...|.-...- +|.+ .. --
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 578888888999999999999999988754 24565555433222 2221 11 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 157 TLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 157 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
+--+.+.+.|++++|..++..+.++.|.|...|-.+
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 334567788899999999999888877776555544
No 218
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=35.39 E-value=4e+02 Score=26.95 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=38.2
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.|-.....+..+|++..|..++.+-.+.. +-+...|-+-+..-+....++.|..+|.+-....+
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~--------------pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN--------------PNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 34444455555566666655555544322 22446677777777777777777777777665544
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=35.06 E-value=3.3e+02 Score=25.99 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=60.8
Q ss_pred eHHHHHHHHhc----cCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHh
Q 044945 106 SRNSITAGCGQ----NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLS-ACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 106 t~n~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~-~~~~~g~~~~A~~~~~~m~~ 180 (296)
.|..++..++- ....+.|.+++.++.++ .|+...|...-. .+...|++++|.+.|+....
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIE 295 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 56666666554 46678899999999875 588777765554 45578999999999997653
Q ss_pred cC-----CCCcchhHHh-------hHHHHHHHHHHHHhC
Q 044945 181 IE-----PNNTGAYVIL-------INEALKDLLERMEQE 207 (296)
Q Consensus 181 ~~-----~~~~~~y~~l-------~~~~a~~l~~~M~~~ 207 (296)
.. ......|... .|++|.+.|.++.+.
T Consensus 296 ~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 296 SQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred chhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 21 1122233332 889999999999874
No 220
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.64 E-value=2.4e+02 Score=27.48 Aligned_cols=94 Identities=5% Similarity=0.046 Sum_probs=62.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI--E 182 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--~ 182 (296)
..-.-|+.-|.+.+++++|..++..| |+-|+.. ---.+-+++.+.+.+.---++.+..++..... .
T Consensus 409 l~~~eL~~~yl~~~qi~eAi~lL~sm-------nW~~~g~-----~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~a 476 (545)
T PF11768_consen 409 LGLVELISQYLRCDQIEEAINLLLSM-------NWNTMGE-----QCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYA 476 (545)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-------CccccHH-----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccC
Confidence 56677899999999999999999998 3333211 11234556667777776666777777776543 2
Q ss_pred CCCcchhHHh------hHHHHHHHHHHHHhCCCc
Q 044945 183 PNNTGAYVIL------INEALKDLLERMEQEGYV 210 (296)
Q Consensus 183 ~~~~~~y~~l------~~~~a~~l~~~M~~~g~~ 210 (296)
|..+.+..+. ..+-|.++|+.|.+.+--
T Consensus 477 p~rpl~~~~~~ey~d~V~~~aRRfFhhLLR~~rf 510 (545)
T PF11768_consen 477 PTRPLSDATVLEYRDPVSDLARRFFHHLLRYQRF 510 (545)
T ss_pred CCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344444433 667888888888876543
No 221
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.10 E-value=88 Score=25.60 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.|+..+|..++..+...|+.++|....+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 79999999999999999999999999999876544
No 222
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=33.57 E-value=3.3e+02 Score=28.57 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
..-|-+=-.++..|++.+|..+|.+.++....+..+|.-+ ++..|.++|+.-.+.=..-|.+.+
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 3333333345566677777777777665432222222222 556666666554443333343333
No 223
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=33.37 E-value=2.5e+02 Score=22.42 Aligned_cols=61 Identities=5% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 108 NSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 108 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.++..+.. .++++++..++..|.----+ .|...++-.. .+...|+|++|.++|+++.+..+
T Consensus 15 ~~~~~aL~-~~d~~D~e~lLdALrvLrP~------------~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 15 EVLMYALR-SADPYDAQAMLDALRVLRPN------------LKELDMFDGW--LLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHhCCC------------ccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC
No 224
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=33.27 E-value=2.5e+02 Score=26.56 Aligned_cols=64 Identities=13% Similarity=-0.051 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhh---hhHHHHHHHHhhcCCCCCeEEEEecccCccchh
Q 044945 193 INEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYY---HGERLALVFGIISTPDGTTIRVIKNLPSLRGLR 264 (296)
Q Consensus 193 ~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ii~~~~k~g~~~ 264 (296)
.|+...+++..-.+.|+.||-.+|--+.+...-...... ..-.++...|+- .|.-+|++||++.
T Consensus 152 ~Wqy~drl~g~y~e~Gv~inrE~FGpLtgtLvPPsisiav~ilE~Lla~eqGVk--------siSv~Y~Q~gn~~ 218 (441)
T PF06368_consen 152 DWQYVDRLCGYYEENGVEINREPFGPLTGTLVPPSISIAVSILEALLAAEQGVK--------SISVGYAQQGNLI 218 (441)
T ss_dssp HHHHHHHHHHHHHHTT---EEE--TTTTSSS--HHHHHHHHHHHHHHHHHTT----------EEEEEEE--S-HH
T ss_pred HHHHHHHHHHHHHhcCCccccccCCCCCcCccCcHHHHHHHHHHHHHHHHcCCe--------EEEecccccCChH
Confidence 577777888888888888887776443333322221111 111112222221 2366799999987
No 225
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.95 E-value=28 Score=27.21 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=28.8
Q ss_pred eehHH---HHHhhcccHHHHHHHHHHhHhcccCCCccccHHH
Q 044945 14 VELSN---GLAGCNEFMDKANGITDRFEERAVSIGHYADLDG 52 (296)
Q Consensus 14 vs~n~---~~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~ 52 (296)
+.|-+ .+.+.|. -.+|..+|.+|.++|-++...+.+..
T Consensus 96 ~aWvNDe~tlR~ygs-k~DaY~VF~kML~~G~pPddW~~Ll~ 136 (140)
T PF11663_consen 96 YAWVNDEQTLRAYGS-KTDAYAVFRKMLERGNPPDDWDALLK 136 (140)
T ss_pred EEEeCCCcchhhhcc-CCcHHHHHHHHHhCCCCCccHHHHHH
Confidence 44544 6677776 78999999999999988777665544
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.40 E-value=3.6e+02 Score=23.98 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=26.9
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
|.-.|-.|=..|.+.|+.+.|..-|.+=.+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 456899999999999999999999998766
No 227
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.51 E-value=2.8e+02 Score=26.55 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=37.4
Q ss_pred HhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 114 CGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 114 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
+.+.|..++|..-|+...+. .||..+---|+-.+.--|+-++..+.|.+|...
T Consensus 286 fiq~gqy~dainsfdh~m~~---------------~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE---------------APNFIAALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred EEecccchhhHhhHHHHHHh---------------CccHHhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 56777788888777765443 477765444444555668899999999999753
No 228
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.45 E-value=2.1e+02 Score=20.58 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=45.2
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHh---ccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCG---QNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSAC 162 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~---~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~ 162 (296)
.++++.+.++++ .|.+-.=.--+ ..|+.+.|.+++.... +| |+ -|.++++++
T Consensus 22 ~~v~d~ll~~~i-------lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---------------~~--aF~~Fl~aL 76 (88)
T cd08819 22 RDVCDKCLEQGL-------LTEEDRNRIEAATENHGNESGARELLKRIV-QK---------------EG--WFSKFLQAL 76 (88)
T ss_pred HHHHHHHHhcCC-------CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---------------Cc--HHHHHHHHH
Confidence 778888888888 77664433344 6699999999999998 54 22 266778888
Q ss_pred HhcCCHHHHHH
Q 044945 163 RVHRNVELAEK 173 (296)
Q Consensus 163 ~~~g~~~~A~~ 173 (296)
...|.-+-|.+
T Consensus 77 reT~~~~LA~e 87 (88)
T cd08819 77 RETEHHELARE 87 (88)
T ss_pred HHcCchhhhhc
Confidence 87777665543
No 229
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=29.60 E-value=1.1e+02 Score=31.50 Aligned_cols=201 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHhHhcccC------CCccccHHHHHhcCCCccCCceehhhhhc-------ccccccccccCCH-HHHH
Q 044945 24 NEFMDKANGITDRFEERAVS------IGHYADLDGISDQLPSSSGGRQVDIHFDG-------GVDGLRPSRSGSV-RKVF 89 (296)
Q Consensus 24 ~~~~~~A~~~f~~M~~~~~~------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~-------~~~i~~y~k~g~~-~~~f 89 (296)
|. +++|..+|.+-+..++- .|++.+|+++-+.-.+......-|.+..+ ...+.=|-|.|.. .++|
T Consensus 814 gM-lEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~ 892 (1416)
T KOG3617|consen 814 GM-LEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVF 892 (1416)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHH
Q ss_pred hhccc------------CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHH
Q 044945 90 EIMAV------------RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLT 157 (296)
Q Consensus 90 ~~M~~------------~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~ 157 (296)
+-+.+ ++- -.|.=.=.-+-..|+.|.|+.+|..-+. |=+
T Consensus 893 rmL~e~p~~~e~Yv~~~~d~-------~L~~WWgqYlES~GemdaAl~~Y~~A~D----------------------~fs 943 (1416)
T KOG3617|consen 893 RMLKEYPKQIEQYVRRKRDE-------SLYSWWGQYLESVGEMDAALSFYSSAKD----------------------YFS 943 (1416)
T ss_pred HHHHhChHHHHHHHHhccch-------HHHHHHHHHHhcccchHHHHHHHHHhhh----------------------hhh
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh-------hHHHHHHHHHHH----------HhCCCcCCCccceeec
Q 044945 158 LLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL-------INEALKDLLERM----------EQEGYVPDTKEVLLDV 220 (296)
Q Consensus 158 Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l-------~~~~a~~l~~~M----------~~~g~~p~~~t~~~~~ 220 (296)
++...|-.|++++|.++-++-.. -..+|.+. ...+|..+|.+- ++.++.-..-++....
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esgd----~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESGD----KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred heeeEeeccCchHHHHHHHhccc----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q ss_pred chhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecccCccchhhHHHH
Q 044945 221 EEEQKKNILYYHGERLALVFGIISTPDGTTIRVIKNLPSLRGLRHGNKV 269 (296)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~k~g~~~~A~~~ 269 (296)
+.........++.+.-....-- +-.|-|.|.++.|.++
T Consensus 1020 ~~~d~v~aArYyEe~g~~~~~A-----------VmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGYAHKA-----------VMLYHKAGMIGKALEL 1057 (1416)
T ss_pred CchhHHHHHHHHHHcchhhhHH-----------HHHHHhhcchHHHHHH
No 230
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=29.41 E-value=22 Score=23.77 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=19.9
Q ss_pred chhhHHHHHhhhhcceEEEecC
Q 044945 262 GLRHGNKVVSKIVHREMIVRDN 283 (296)
Q Consensus 262 ~~~~A~~~f~~m~~r~~~~~~~ 283 (296)
+++.|.+.|.++..+|-||+|.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 7899999999999999998873
No 231
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=29.10 E-value=2.2e+02 Score=25.21 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHH-----HhCCCcCCCccc
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERM-----EQEGYVPDTKEV 216 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M-----~~~g~~p~~~t~ 216 (296)
--..++..++..+..+|+.+.+...++++....|.|...|..+ ....|...++++ .+.|+.|-..+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3456788999999999999999999999999988887777777 334455555444 457888875543
No 232
>PLN02789 farnesyltranstransferase
Probab=28.56 E-value=3.7e+02 Score=24.24 Aligned_cols=141 Identities=11% Similarity=-0.015 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccC-CH---HHHHhhcccCCcccCCC
Q 044945 27 MDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSG-SV---RKVFEIMAVRDFLEYCD 102 (296)
Q Consensus 27 ~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g-~~---~~~f~~M~~~~~~~~~p 102 (296)
+.+|.+.|......+ +..+.|..+.+..-..... -... +...-..+.+.| .+ ...++++.+.+- -
T Consensus 36 ~~~a~~~~ra~l~~~---e~serAL~lt~~aI~lnP~--~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~np----k 104 (320)
T PLN02789 36 FREAMDYFRAVYASD---ERSPRALDLTADVIRLNPG--NYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNP----K 104 (320)
T ss_pred HHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCch--hHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCC----c
Confidence 677777777766543 3455555555433222111 0000 000001122224 23 444555444332 1
Q ss_pred ceeeHHHHHHHHhccCCh--hHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 103 YAISRNSITAGCGQNGPF--DEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~--~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
+-.+|+---..+-+.|+. ++++++++.|.+.. +-|..+|+-.--.+.+.|++++|...++++.+
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 114576443334445542 66788887777643 24778898888888899999999999999999
Q ss_pred cCCCCcchhHHh
Q 044945 181 IEPNNTGAYVIL 192 (296)
Q Consensus 181 ~~~~~~~~y~~l 192 (296)
..+.|..+|+-.
T Consensus 171 ~d~~N~sAW~~R 182 (320)
T PLN02789 171 EDVRNNSAWNQR 182 (320)
T ss_pred HCCCchhHHHHH
Confidence 988888777765
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.98 E-value=3.1e+02 Score=21.72 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hhHHh-hHHHHHHHHHHHHhCCC
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG-------AYVIL-INEALKDLLERMEQEGY 209 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~y~~l-~~~~a~~l~~~M~~~g~ 209 (296)
..+..-.+.-++.+.+.|+-+.-.++..++.+.+..++. +|.-+ ...++.+++.+--+.|+
T Consensus 83 n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 83 NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 345566677788888888888888888887654322221 11111 45666666666666665
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=27.97 E-value=2.1e+02 Score=27.36 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=34.7
Q ss_pred CceeeHHHHHHHHhccCChhHHHHHHHHHHHc----CCccChhhhhh
Q 044945 102 DYAISRNSITAGCGQNGPFDEGLKFFGQMLMA----KIKARHAPFSR 144 (296)
Q Consensus 102 p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd~~ty~~ 144 (296)
+|-+-=+..++++...|++.++..++++|..+ .+..|.-+|+-
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 33355577889999999999999999998864 44488888887
No 235
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=27.54 E-value=33 Score=22.31 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.5
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQ 116 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~ 116 (296)
-.+|..|+.++. .|..-.||-.+.=|..
T Consensus 12 I~vFK~~pSr~Y---D~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 12 IAVFKQMPSRNY---DPKTRKWNFSLEDYST 39 (55)
T ss_pred HHHHHcCccccc---CccceeeeeeHHHHHH
Confidence 679999999988 8988999988876654
No 236
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=27.50 E-value=4.5e+02 Score=23.45 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHhhcccCCcccCCCceeeHHH--HHHHHhccCC----hhHHHHHHHHHHHcCC---ccChhhhhhhhcc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNS--ITAGCGQNGP----FDEGLKFFGQMLMAKI---KARHAPFSRIMHA 148 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~--li~~~~~~g~----~~~A~~l~~~M~~~g~---~pd~~ty~~li~~ 148 (296)
.++++.|.+.++ +-+..+|-+ +|........ ..+|.++|+.|++... .++.+++.+|+..
T Consensus 82 ~~~y~~L~~~gF---k~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 82 LDIYEKLKEAGF---KRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHhcc---CccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 566666666666 555555544 3333322222 3478888888887542 4677777777776
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=26.36 E-value=3.5e+02 Score=21.90 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=53.3
Q ss_pred HhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--c----
Q 044945 114 CGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT--G---- 187 (296)
Q Consensus 114 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~---- 187 (296)
+-+.|+.++|..+|+-+...+. -|..-|..|=..|-..+++++|...+.......+.|. .
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~--------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF--------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 4578999999999998876442 3555566776677778889999998887655433222 1
Q ss_pred -hhHHh-hHHHHHHHHHHHHh
Q 044945 188 -AYVIL-INEALKDLLERMEQ 206 (296)
Q Consensus 188 -~y~~l-~~~~a~~l~~~M~~ 206 (296)
.|-.+ ..+.|...|+.-.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 22222 66777777766555
No 238
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.04 E-value=2.9e+02 Score=26.43 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=58.9
Q ss_pred cccCCH--HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHH-------HHcCCccChhhhhhhhcc--
Q 044945 80 SRSGSV--RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQM-------LMAKIKARHAPFSRIMHA-- 148 (296)
Q Consensus 80 ~k~g~~--~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M-------~~~g~~pd~~ty~~li~~-- 148 (296)
.|.|.. +.+|+-+-..|+.++.-..+|||. -|++.=-+++++.-++.+ .+.|+..|..+|..|...
T Consensus 146 vRHGtpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLv 222 (480)
T TIGR01503 146 IRHGTPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLV 222 (480)
T ss_pred ccCCCCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCcc
Confidence 456666 888888888888777778899997 477777777777666533 347998999999987544
Q ss_pred CCCHHHHHHHHHHH
Q 044945 149 GSTENVWLTLLSAC 162 (296)
Q Consensus 149 ~p~~~~~~~Li~~~ 162 (296)
+|.+..--++|.++
T Consensus 223 PPsisiav~ilE~L 236 (480)
T TIGR01503 223 PPSISNAIGIIEGL 236 (480)
T ss_pred ChHHHHHHHHHHHH
Confidence 77777766776653
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=25.95 E-value=3.3e+02 Score=21.50 Aligned_cols=65 Identities=9% Similarity=-0.029 Sum_probs=47.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
--.+.-++...+.|+-|+-.++..++...+ .|+....-.+-.+|.+-|+..+|..++.+.-+++.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~--------------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE--------------EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc--------------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 346677888889999999999998876433 46777777888999999999999999998876653
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=25.54 E-value=3.8e+02 Score=25.58 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=68.1
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHH-HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHh
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSIT-AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRV 164 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li-~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~ 164 (296)
+++++.+..+ -|+..-|...- .-+...|++++|.+.|++..... ..|.. .+....|-.. -.+.-
T Consensus 253 ~~lL~~~~~~-----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----~~~~Q----l~~l~~~El~-w~~~~ 317 (468)
T PF10300_consen 253 EELLEEMLKR-----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-----SEWKQ----LHHLCYFELA-WCHMF 317 (468)
T ss_pred HHHHHHHHHh-----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-----hhHHh----HHHHHHHHHH-HHHHH
Confidence 8888888765 46667777665 34556799999999999765311 11111 1334444433 34677
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchhHHh---------hH-------HHHHHHHHHHH
Q 044945 165 HRNVELAEKVADMILMIEPNNTGAYVIL---------IN-------EALKDLLERME 205 (296)
Q Consensus 165 ~g~~~~A~~~~~~m~~~~~~~~~~y~~l---------~~-------~~a~~l~~~M~ 205 (296)
.++|++|...|..+.+...-....|.-+ .. ++|.++|.+..
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8999999999999987544334444444 23 77777777653
No 241
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=24.96 E-value=1.3e+02 Score=22.33 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=38.8
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMH 147 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 147 (296)
++-+..+-..|+ .|+.....+.+.+|-|.+++--|.++|+-.+.+ +.+....|.-++.
T Consensus 30 rrglN~l~~~Dl---VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 30 RRGLNNLFGYDL---VPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHTTSSB------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHhcccc---CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 455556667888 999999999999999999999999999876653 3222224544443
No 242
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=5.6e+02 Score=24.94 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=51.4
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
..+.+.|++..|..-|.+++.+. | -|...|+--=-+|.+.|.+..|.+-.+...+..|.....|.-
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~--P------------~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRD--P------------EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcC--C------------chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 34567788888888888877764 3 355666666667777777777777777666665544433321
Q ss_pred h--------hHHHHHHHHHHHHh
Q 044945 192 L--------INEALKDLLERMEQ 206 (296)
Q Consensus 192 l--------~~~~a~~l~~~M~~ 206 (296)
= .+++|.+.|.+=.+
T Consensus 432 Kg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 56666666654443
No 243
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.33 E-value=2.8e+02 Score=20.09 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=35.8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc----CCCHHHHHHHHHHHHhcCC
Q 044945 108 NSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA----GSTENVWLTLLSACRVHRN 167 (296)
Q Consensus 108 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~----~p~~~~~~~Li~~~~~~g~ 167 (296)
+.+|..|...|+.++|.+-+.++......+ .+.+..+-.+ ......+..|+..+++.|.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~-~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHH-EVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHH-HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999999998874432222 2222222222 3445667777777777664
No 244
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.19 E-value=3.2e+02 Score=20.73 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044945 121 DEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADM 177 (296)
Q Consensus 121 ~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 177 (296)
+++.++|..|...|+-- --..-|...=..+.+.|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~------------~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGT------------KLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTST------------TBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 39999999999998842 3455677777788999999999999874
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.16 E-value=4.9e+02 Score=22.82 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=63.8
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.|+.-+.. .+.|+..+|.+-|.+-++.. |+. +| .||..-| |-..+...|+.++|..+|..+.+.-|..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s-~~------~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNS-TY------TPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCC-cc------cchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence 49988775 46777999999999988753 221 11 3666666 6788899999999999999998865543
Q ss_pred cchhHHh-----------hHHHHHHHHHHHHhC
Q 044945 186 TGAYVIL-----------INEALKDLLERMEQE 207 (296)
Q Consensus 186 ~~~y~~l-----------~~~~a~~l~~~M~~~ 207 (296)
..+=-.| ..++|...+.+..+.
T Consensus 212 ~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3221111 568888888877654
No 246
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=24.10 E-value=29 Score=22.04 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=17.0
Q ss_pred chhhHHHHHhhhhcceEEEecC
Q 044945 262 GLRHGNKVVSKIVHREMIVRDN 283 (296)
Q Consensus 262 ~~~~A~~~f~~m~~r~~~~~~~ 283 (296)
+++.|...|.++...|-||++.
T Consensus 28 d~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 28 DYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp -CCHHHHHHHHCCCTT-S-CCC
T ss_pred CHHHHHHHHHHHHHcCCCChHh
Confidence 7789999999999999998873
No 247
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=23.86 E-value=1.3e+02 Score=23.86 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=35.4
Q ss_pred eeHHHHHHHHhccCC-hhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 105 ISRNSITAGCGQNGP-FDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 105 ~t~n~li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
-+|++++.+.++..- ---+..+|.-|++.+.+++..-|..+|++
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~ 124 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKA 124 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 679999999988877 45789999999998887766666666655
No 248
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=23.46 E-value=6e+02 Score=26.47 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=45.7
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
|..|--++-..|-+.|+.++|..+|++-... .|+..--..+..+|.|.+.+.+-.++--+|-+.-
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---------------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQK---------------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5566666667777777777777776665432 4566666666777777777777666666666655
Q ss_pred CCCcch
Q 044945 183 PNNTGA 188 (296)
Q Consensus 183 ~~~~~~ 188 (296)
|.+..+
T Consensus 141 pk~~yy 146 (932)
T KOG2053|consen 141 PKRAYY 146 (932)
T ss_pred Ccccch
Confidence 555544
No 249
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.45 E-value=4.3e+02 Score=21.94 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=42.2
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.|-.-+. +++.|..++|+.-|.++.+.|..- | |-..-. -.-......|+...|...|+++-..
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~----Y-------pvLA~m-r~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGS----Y-------PVLARM-RAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc----c-------hHHHHH-HHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3444433 578899999999999999987632 1 211111 1112456789999999999998654
No 250
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=23.20 E-value=3.4e+02 Score=20.55 Aligned_cols=61 Identities=13% Similarity=0.001 Sum_probs=39.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
+=-+-+.|-..|+.++|+.+|++-...- |+... +......+--++...|+.++|...+-..
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~---------~~~l~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEF--PDDEL---------NAALRVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc---------cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345677888999999999999887642 22110 1112222333778889999998887654
No 251
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.02 E-value=4.6e+02 Score=25.70 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc----------------------------------CCCHHH
Q 044945 109 SITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA----------------------------------GSTENV 154 (296)
Q Consensus 109 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~----------------------------------~p~~~~ 154 (296)
+|--.|...|.-.+|++.++.=.. +...|.-+..+ .+|..+
T Consensus 358 aLAVSytNeg~q~~Al~~L~~Wi~-----~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 358 ALAVSYTNEGLQNQALKMLDKWIR-----NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHH-----hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHH
Q 044945 155 WLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLER 203 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~ 203 (296)
.+.|==.|--.|.++.|...|+......|.|-..||-| ..++|..-+.+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
No 252
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.69 E-value=2.2e+02 Score=20.25 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 157 TLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 157 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
++++-+.+|.--++|..+.+.|.+++.-+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~ 64 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEIT 64 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCC
Confidence 57888899999999999999999876433
No 253
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=22.55 E-value=6.6e+02 Score=23.73 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHH-cCCccChh--hhhhhhcc-----------------------CCCH-HHHHHHH
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLM-AKIKARHA--PFSRIMHA-----------------------GSTE-NVWLTLL 159 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~--ty~~li~~-----------------------~p~~-~~~~~Li 159 (296)
|.+.+...|+.|+++.|+++.+.=++ .-+.+|+. .=..|+.+ .||. ..--.--
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh----------hHHHHHHH
Q 044945 160 SACRVHRNVELAEKVADMILMIEPNNTGAYVIL----------INEALKDL 200 (296)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l----------~~~~a~~l 200 (296)
.+|.+.|++.++-++++.+-+.+|...+.-... +.+.+.+|
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.51 E-value=4.7e+02 Score=24.41 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
+.|.+.|++..|..-|+.- .+...|....+- ..-..+++-|--.|.|.+++..|...-+...+.+++
T Consensus 216 n~~fK~gk~~~A~~~Yera------v~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERA------VSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred hHHHhhchHHHHHHHHHHH------HHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Q ss_pred Cc-------chhHHh-hHHHHHHHHHHHHh
Q 044945 185 NT-------GAYVIL-INEALKDLLERMEQ 206 (296)
Q Consensus 185 ~~-------~~y~~l-~~~~a~~l~~~M~~ 206 (296)
|+ .++..+ .++.|...|.++++
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHH
No 255
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=22.46 E-value=4.6e+02 Score=24.82 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=60.5
Q ss_pred cccCCH--HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHH---HHH----HHcCCccChhhhhhhhcc--
Q 044945 80 SRSGSV--RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFF---GQM----LMAKIKARHAPFSRIMHA-- 148 (296)
Q Consensus 80 ~k~g~~--~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~---~~M----~~~g~~pd~~ty~~li~~-- 148 (296)
.|+|.. +.+++-...-+...|.-..++||.- |++.-.+++++.-+ +++ .+.|+..+..+|.-|...
T Consensus 103 vRhGt~d~~~l~e~~~a~g~~a~egg~isy~~p---y~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~ 179 (428)
T cd00245 103 VRHGTPDARLLAEIAIASGFDATEGGPISYNLP---YSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLV 179 (428)
T ss_pred eccCCccHHHHHHHHHHhCcccccccceeeccc---cCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcC
Confidence 455777 7777777888888888888999974 55666777777666 333 357999999999987633
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 044945 149 GSTENVWLTLLSACRVHR 166 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g 166 (296)
+|....--++|.++...|
T Consensus 180 pptla~aiaylea~la~g 197 (428)
T cd00245 180 PPSILIAIQILEALLAAE 197 (428)
T ss_pred CcHHHHHHHHHHHHHHcc
Confidence 666666667777666555
No 256
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=22.41 E-value=5.2e+02 Score=22.46 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=46.4
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.+.-+...+.+.|+.++|.++|++....-..-+..-|+ ......+++| .+...|++..|.+.|++..+..|
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~------~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS------AKEYFLKAIL-CHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH------HHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh------HHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Confidence 46667888999999999999999987654332221111 1112234544 55567999999999999877654
No 257
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=22.15 E-value=9.3e+02 Score=25.37 Aligned_cols=62 Identities=6% Similarity=0.048 Sum_probs=50.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
...-++-.+|-+.|+.++|.+++++..+.. | -|+.+-|-+=..|+.. ++++|+..+.+..++
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~------------~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD--R------------DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--c------------ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 456678889999999999999999998865 2 4777777777788888 999999988887654
No 258
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.01 E-value=99 Score=28.04 Aligned_cols=37 Identities=3% Similarity=0.057 Sum_probs=31.3
Q ss_pred CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 044945 95 RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAK 134 (296)
Q Consensus 95 ~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g 134 (296)
-|+ -||.+|++.+|+.+-+.+...+|.++.-.|....
T Consensus 129 YGi---F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 129 YGI---FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hcc---ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 466 7999999999999999999999998888877643
No 259
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=21.63 E-value=3.6e+02 Score=20.33 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
.||...|-+| +-.|.|.-++++.-+.++.
T Consensus 68 ~pdL~p~~AL--~a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 68 YPDLEPWAAL--CAWKLGLASALESRLTRLA 96 (116)
T ss_dssp -GGGHHHHHH--HHHHCT-HHHHHHHHHHHC
T ss_pred CccHHHHHHH--HHHhhccHHHHHHHHHHHH
Confidence 3444444443 2234444444444444443
No 260
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=4.2e+02 Score=25.76 Aligned_cols=79 Identities=18% Similarity=0.105 Sum_probs=42.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc--------------------CCCH-HHHHHHHHHHHhcCCHHHH
Q 044945 113 GCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA--------------------GSTE-NVWLTLLSACRVHRNVELA 171 (296)
Q Consensus 113 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~--------------------~p~~-~~~~~Li~~~~~~g~~~~A 171 (296)
+-+..|+++.|..+|.+-..-.- +|.+-|+-=..+ .|+. .-|+-+=.++.--|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 45678999999999988655321 244444322222 3332 2343333344444566666
Q ss_pred HHHHHHHHhcCCCCcchhHHh
Q 044945 172 EKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 172 ~~~~~~m~~~~~~~~~~y~~l 192 (296)
..-|.+=.+..|.|...++-+
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGL 110 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhH
Confidence 666665555555555555444
No 261
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.48 E-value=7.6e+02 Score=24.03 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcC-CccChhhhhhhhcc-------------------CCCHHHHHHHHHHHHhcC
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAK-IKARHAPFSRIMHA-------------------GSTENVWLTLLSACRVHR 166 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~li~~-------------------~p~~~~~~~Li~~~~~~g 166 (296)
|--+-..|.+..+.++.++.|.+-..-. -.||++--..=+.- +-++..|--+=-+.-|.+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 7777788999999999999998876633 22444433322221 334555655555566889
Q ss_pred CHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 167 NVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 167 ~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
++++++..|++..++-|.-+-.|+.. .++.|.+.++.-.+
T Consensus 443 k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999999998877767777766 67777777765443
No 262
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=21.30 E-value=8.7e+02 Score=24.67 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=49.1
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.|-.|..-=-+.|.+-+|..+|+.=+-++ +-|...|-..|.+=.+.|+.+.|+.+..+-.+..|.+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN--------------Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN--------------PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC--------------CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 46666555556677777777777655443 3577889999999999999999988877665544444
Q ss_pred cchhH
Q 044945 186 TGAYV 190 (296)
Q Consensus 186 ~~~y~ 190 (296)
..-|.
T Consensus 787 g~LWa 791 (913)
T KOG0495|consen 787 GLLWA 791 (913)
T ss_pred chhHH
Confidence 44443
No 263
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=21.09 E-value=93 Score=23.46 Aligned_cols=51 Identities=8% Similarity=0.140 Sum_probs=38.3
Q ss_pred ccccCCHHHHHhhcccCCcccCCCc---------------eeeHHHHHHHHhccCChhHHHHHHHH
Q 044945 79 PSRSGSVRKVFEIMAVRDFLEYCDY---------------AISRNSITAGCGQNGPFDEGLKFFGQ 129 (296)
Q Consensus 79 y~k~g~~~~~f~~M~~~~~~~~~p~---------------~~t~n~li~~~~~~g~~~~A~~l~~~ 129 (296)
+|...+...+...|.+.|-.+|.|. ...+...+..+...|++++|++++..
T Consensus 30 ~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~~ 95 (115)
T PF12793_consen 30 FCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLDF 95 (115)
T ss_pred CCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444444889999999888888764 12355577888999999999999873
No 264
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.00 E-value=1.5e+02 Score=20.07 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=23.5
Q ss_pred hccCChhHHHHHHHHHHHcCCccChhhhhhhhc
Q 044945 115 GQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMH 147 (296)
Q Consensus 115 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 147 (296)
.-.|+.+++.+++++..+.|..|..+....+..
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p 44 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMP 44 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 346888999999999999998665554444433
No 265
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.62 E-value=3.9e+02 Score=25.78 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=48.5
Q ss_pred hccCChhHHHHHHHHHHHcCCccChhhhhhhhcc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 115 GQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA--GSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 115 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~--~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
.-.|.+.+|+.++++....+ ....|+..+... .++......+++.....+....|...+++|.+.+
T Consensus 211 ~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G 278 (484)
T PRK14956 211 KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEG 278 (484)
T ss_pred HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Confidence 34599999999999876532 223555555433 6677788888888777667788999999998765
Done!