Query 044945
Match_columns 296
No_of_seqs 209 out of 2532
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 99.9 1.7E-26 5.7E-31 218.9 12.1 168 15-222 28-219 (501)
2 4g26_A Pentatricopeptide repea 99.9 6.1E-27 2.1E-31 221.9 7.7 171 73-294 30-221 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.8 9.6E-21 3.3E-25 187.2 6.4 126 70-212 128-265 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-18 3.8E-23 172.6 9.5 115 104-231 127-254 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 2.4E-15 8.3E-20 143.4 7.9 188 9-207 80-368 (597)
6 2xpi_A Anaphase-promoting comp 99.5 7.4E-15 2.5E-19 140.0 7.5 253 12-276 199-504 (597)
7 1w3b_A UDP-N-acetylglucosamine 98.8 1.4E-08 4.7E-13 91.5 8.2 251 12-276 66-368 (388)
8 2y4t_A DNAJ homolog subfamily 98.6 5E-08 1.7E-12 89.2 7.8 189 12-212 25-289 (450)
9 1w3b_A UDP-N-acetylglucosamine 98.5 1E-06 3.5E-11 79.1 12.5 92 105-212 238-337 (388)
10 3mkr_A Coatomer subunit epsilo 98.2 8.1E-06 2.8E-10 71.1 11.7 132 76-213 41-199 (291)
11 2y4t_A DNAJ homolog subfamily 98.2 4.5E-06 1.5E-10 76.0 10.4 161 20-213 153-362 (450)
12 4eqf_A PEX5-related protein; a 98.1 1.1E-05 3.7E-10 71.6 9.1 170 20-206 75-275 (365)
13 3mkr_A Coatomer subunit epsilo 98.1 0.00014 4.6E-09 63.3 15.6 48 77-133 109-159 (291)
14 1fch_A Peroxisomal targeting s 98.1 2.1E-05 7.1E-10 69.4 10.6 161 20-213 74-284 (368)
15 3hym_B Cell division cycle pro 98.0 1.2E-05 4E-10 69.6 8.3 160 24-206 36-221 (330)
16 2gw1_A Mitochondrial precursor 98.0 3.6E-05 1.2E-09 71.0 11.0 125 81-207 201-367 (514)
17 1fch_A Peroxisomal targeting s 98.0 6.7E-05 2.3E-09 66.1 11.7 168 20-206 108-313 (368)
18 2ho1_A Type 4 fimbrial biogene 97.9 0.00024 8.1E-09 59.1 13.8 145 21-206 48-203 (252)
19 2fo7_A Synthetic consensus TPR 97.9 0.0001 3.5E-09 54.3 10.1 112 77-206 9-131 (136)
20 4eqf_A PEX5-related protein; a 97.9 0.00015 5.1E-09 64.1 12.3 213 44-275 78-309 (365)
21 3cv0_A Peroxisome targeting si 97.8 3.9E-05 1.3E-09 66.2 8.0 157 21-207 32-235 (327)
22 1b89_A Protein (clathrin heavy 97.8 3.8E-05 1.3E-09 70.7 8.2 104 14-130 33-148 (449)
23 1b89_A Protein (clathrin heavy 97.8 5.6E-06 1.9E-10 76.3 2.3 146 16-204 9-174 (449)
24 2vq2_A PILW, putative fimbrial 97.8 0.00034 1.2E-08 56.6 13.0 145 21-206 19-175 (225)
25 3cv0_A Peroxisome targeting si 97.8 0.00027 9.4E-09 60.7 12.9 111 79-207 148-269 (327)
26 3fp2_A TPR repeat-containing p 97.7 5.2E-05 1.8E-09 70.5 7.6 114 77-208 284-408 (537)
27 2gw1_A Mitochondrial precursor 97.7 2.2E-05 7.5E-10 72.4 4.6 161 23-207 202-401 (514)
28 2q7f_A YRRB protein; TPR, prot 97.7 0.00035 1.2E-08 57.5 10.7 112 77-206 65-187 (243)
29 3ieg_A DNAJ homolog subfamily 97.7 0.00015 5.3E-09 63.0 8.9 89 105-207 155-263 (359)
30 3hym_B Cell division cycle pro 97.6 0.00069 2.4E-08 58.2 12.8 165 20-207 66-265 (330)
31 2ho1_A Type 4 fimbrial biogene 97.6 9.1E-05 3.1E-09 61.7 6.7 67 105-185 38-104 (252)
32 2q7f_A YRRB protein; TPR, prot 97.6 7.7E-05 2.6E-09 61.5 5.7 176 76-276 30-222 (243)
33 2fo7_A Synthetic consensus TPR 97.6 0.0008 2.7E-08 49.2 10.6 121 106-275 3-131 (136)
34 1na0_A Designed protein CTPR3; 97.5 0.0012 4.1E-08 47.8 11.1 89 105-207 10-106 (125)
35 2pl2_A Hypothetical conserved 97.5 0.00011 3.6E-09 60.8 5.6 114 77-208 13-148 (217)
36 3as5_A MAMA; tetratricopeptide 97.5 0.0017 5.7E-08 50.5 12.3 112 78-207 17-139 (186)
37 3uq3_A Heat shock protein STI1 97.5 0.00099 3.4E-08 55.0 11.3 155 22-207 17-202 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 97.4 0.0011 3.6E-08 55.6 10.7 72 104-189 43-114 (275)
39 2vq2_A PILW, putative fimbrial 97.4 0.0012 4E-08 53.4 10.3 145 21-207 53-211 (225)
40 3ieg_A DNAJ homolog subfamily 97.3 0.0019 6.6E-08 55.9 11.8 82 112-207 128-217 (359)
41 2pl2_A Hypothetical conserved 97.3 0.00085 2.9E-08 55.2 8.4 21 20-41 15-35 (217)
42 1na0_A Designed protein CTPR3; 97.2 0.0019 6.4E-08 46.7 9.0 97 76-190 16-115 (125)
43 3vtx_A MAMA; tetratricopeptide 97.2 0.003 1E-07 49.8 10.8 125 77-206 13-169 (184)
44 3u4t_A TPR repeat-containing p 97.2 0.0048 1.7E-07 51.5 12.3 146 20-207 13-171 (272)
45 3as5_A MAMA; tetratricopeptide 97.2 0.002 6.7E-08 50.1 9.1 143 22-207 20-173 (186)
46 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.0019 6.4E-08 54.1 9.1 145 24-207 19-173 (275)
47 3gyz_A Chaperone protein IPGC; 97.1 0.0057 1.9E-07 47.6 10.6 90 105-208 37-134 (151)
48 3uq3_A Heat shock protein STI1 97.0 0.00052 1.8E-08 56.8 4.0 90 77-182 13-109 (258)
49 3u4t_A TPR repeat-containing p 96.9 0.0011 3.9E-08 55.5 5.8 123 77-216 11-144 (272)
50 2vgx_A Chaperone SYCD; alterna 96.9 0.01 3.5E-07 45.6 10.6 89 105-207 22-118 (148)
51 2lni_A Stress-induced-phosphop 96.9 0.0095 3.2E-07 43.5 10.0 91 103-207 15-113 (133)
52 4gco_A Protein STI-1; structur 96.8 0.014 4.8E-07 43.5 10.6 92 106-213 15-114 (126)
53 1elw_A TPR1-domain of HOP; HOP 96.8 0.015 5E-07 41.3 10.4 89 105-207 5-101 (118)
54 2xcb_A PCRH, regulatory protei 96.8 0.014 4.9E-07 44.1 10.7 89 105-207 19-115 (142)
55 3vtx_A MAMA; tetratricopeptide 96.8 0.0025 8.4E-08 50.3 6.4 151 105-276 6-170 (184)
56 3q49_B STIP1 homology and U bo 96.7 0.02 6.9E-07 42.3 11.0 91 103-207 8-106 (137)
57 3fp2_A TPR repeat-containing p 96.7 0.0031 1E-07 58.3 7.5 116 77-213 251-377 (537)
58 3sz7_A HSC70 cochaperone (SGT) 96.7 0.022 7.5E-07 44.0 11.3 117 77-211 19-138 (164)
59 3upv_A Heat shock protein STI1 96.7 0.028 9.6E-07 41.1 11.4 89 105-207 5-101 (126)
60 2vyi_A SGTA protein; chaperone 96.7 0.028 9.4E-07 40.5 11.1 91 103-207 11-109 (131)
61 1hh8_A P67PHOX, NCF-2, neutrop 96.6 0.032 1.1E-06 44.6 12.4 110 77-207 14-150 (213)
62 3sz7_A HSC70 cochaperone (SGT) 96.6 0.027 9.1E-07 43.5 11.4 95 104-214 11-113 (164)
63 4gco_A Protein STI-1; structur 96.6 0.012 4.2E-07 43.8 8.9 96 77-190 21-119 (126)
64 4gyw_A UDP-N-acetylglucosamine 96.6 0.039 1.3E-06 54.1 14.5 136 13-192 9-151 (723)
65 1hxi_A PEX5, peroxisome target 96.5 0.039 1.3E-06 40.6 11.3 88 105-206 18-113 (121)
66 2dba_A Smooth muscle cell asso 96.5 0.033 1.1E-06 41.4 10.9 93 104-207 28-128 (148)
67 2ond_A Cleavage stimulation fa 96.5 0.026 8.8E-07 48.7 11.4 118 76-212 106-238 (308)
68 1a17_A Serine/threonine protei 96.5 0.035 1.2E-06 42.2 11.1 71 105-189 48-118 (166)
69 3edt_B KLC 2, kinesin light ch 96.4 0.0067 2.3E-07 50.5 7.2 122 73-206 47-197 (283)
70 2kck_A TPR repeat; tetratricop 96.4 0.028 9.7E-07 39.4 9.7 89 105-207 7-106 (112)
71 1elr_A TPR2A-domain of HOP; HO 96.3 0.015 5E-07 42.2 7.8 89 105-207 5-108 (131)
72 3nf1_A KLC 1, kinesin light ch 96.3 0.014 4.6E-07 49.5 8.7 153 24-206 41-223 (311)
73 3mv2_B Coatomer subunit epsilo 96.3 0.017 5.7E-07 50.7 9.3 112 76-207 143-282 (310)
74 4i17_A Hypothetical protein; T 96.3 0.029 1E-06 45.6 10.4 116 78-212 16-149 (228)
75 4abn_A Tetratricopeptide repea 96.3 0.011 3.9E-07 54.7 8.4 112 76-206 144-286 (474)
76 2lni_A Stress-induced-phosphop 96.2 0.026 8.7E-07 41.1 8.6 97 76-190 23-122 (133)
77 4gyw_A UDP-N-acetylglucosamine 96.2 0.0082 2.8E-07 58.9 7.2 153 101-274 5-172 (723)
78 1a17_A Serine/threonine protei 96.2 0.066 2.2E-06 40.6 11.1 89 105-207 14-110 (166)
79 1elw_A TPR1-domain of HOP; HOP 96.1 0.038 1.3E-06 39.0 8.9 96 77-190 12-110 (118)
80 2e2e_A Formate-dependent nitri 96.1 0.039 1.3E-06 43.0 9.6 113 77-207 18-144 (177)
81 2vyi_A SGTA protein; chaperone 96.1 0.043 1.5E-06 39.5 9.1 96 77-190 20-118 (131)
82 3nf1_A KLC 1, kinesin light ch 95.9 0.026 9E-07 47.6 8.3 94 75-180 117-223 (311)
83 2kck_A TPR repeat; tetratricop 95.9 0.049 1.7E-06 38.1 8.5 93 77-185 14-110 (112)
84 1na3_A Designed protein CTPR2; 95.8 0.08 2.7E-06 35.7 9.2 73 104-190 9-81 (91)
85 2dba_A Smooth muscle cell asso 95.8 0.082 2.8E-06 39.1 9.9 94 77-189 36-136 (148)
86 2xev_A YBGF; tetratricopeptide 95.8 0.11 3.7E-06 37.7 10.3 94 107-213 5-109 (129)
87 3edt_B KLC 2, kinesin light ch 95.7 0.013 4.5E-07 48.6 5.5 95 75-181 91-198 (283)
88 2xcb_A PCRH, regulatory protei 95.7 0.092 3.1E-06 39.4 9.8 95 77-189 26-123 (142)
89 3gyz_A Chaperone protein IPGC; 95.6 0.077 2.6E-06 41.0 9.3 90 77-184 44-136 (151)
90 3k9i_A BH0479 protein; putativ 95.6 0.028 9.5E-07 40.8 6.3 81 116-207 2-90 (117)
91 1p5q_A FKBP52, FK506-binding p 95.5 0.1 3.5E-06 45.8 10.9 97 77-192 155-270 (336)
92 2kc7_A BFR218_protein; tetratr 95.5 0.18 6.1E-06 34.8 10.3 79 111-203 7-86 (99)
93 4i17_A Hypothetical protein; T 95.5 0.11 3.8E-06 42.1 10.3 96 103-213 6-109 (228)
94 2vsy_A XCC0866; transferase, g 95.4 0.08 2.7E-06 49.8 10.4 74 105-192 92-168 (568)
95 2l6j_A TPR repeat-containing p 95.4 0.1 3.4E-06 36.7 8.6 69 103-185 3-71 (111)
96 2vgx_A Chaperone SYCD; alterna 95.4 0.11 3.7E-06 39.7 9.2 93 77-187 29-124 (148)
97 2c2l_A CHIP, carboxy terminus 95.3 0.14 4.9E-06 43.5 10.7 31 151-181 71-101 (281)
98 2xev_A YBGF; tetratricopeptide 95.3 0.13 4.3E-06 37.3 9.1 93 78-187 11-111 (129)
99 4ga2_A E3 SUMO-protein ligase 95.3 0.088 3E-06 40.2 8.5 74 105-192 32-105 (150)
100 2h6f_A Protein farnesyltransfe 95.2 0.049 1.7E-06 49.1 7.8 130 20-192 107-240 (382)
101 3urz_A Uncharacterized protein 95.2 0.11 3.6E-06 42.0 9.1 101 111-215 11-123 (208)
102 4gcn_A Protein STI-1; structur 95.2 0.1 3.5E-06 38.6 8.3 88 105-206 9-111 (127)
103 3urz_A Uncharacterized protein 95.1 0.062 2.1E-06 43.4 7.6 69 110-192 60-128 (208)
104 1hh8_A P67PHOX, NCF-2, neutrop 95.0 0.056 1.9E-06 43.2 7.0 86 105-207 7-100 (213)
105 4ga2_A E3 SUMO-protein ligase 95.0 0.064 2.2E-06 41.0 7.0 96 77-191 39-139 (150)
106 2e2e_A Formate-dependent nitri 95.0 0.23 8E-06 38.3 10.5 105 77-199 52-163 (177)
107 3upv_A Heat shock protein STI1 95.0 0.094 3.2E-06 38.2 7.7 88 77-182 12-102 (126)
108 3k9i_A BH0479 protein; putativ 95.0 0.073 2.5E-06 38.5 7.0 69 104-186 27-95 (117)
109 2ond_A Cleavage stimulation fa 95.0 0.13 4.3E-06 44.3 9.5 96 105-216 100-205 (308)
110 2r5s_A Uncharacterized protein 94.4 0.11 3.7E-06 40.6 7.1 99 78-183 15-139 (176)
111 1elr_A TPR2A-domain of HOP; HO 94.4 0.13 4.5E-06 36.8 7.1 92 77-183 12-110 (131)
112 3qou_A Protein YBBN; thioredox 94.3 0.084 2.9E-06 45.1 6.7 26 105-130 152-177 (287)
113 3n71_A Histone lysine methyltr 94.2 0.36 1.2E-05 45.0 11.1 95 105-207 352-464 (490)
114 1p5q_A FKBP52, FK506-binding p 94.2 0.33 1.1E-05 42.4 10.4 105 105-213 148-263 (336)
115 2h6f_A Protein farnesyltransfe 94.1 0.21 7E-06 44.9 9.1 101 105-207 98-229 (382)
116 1hxi_A PEX5, peroxisome target 94.1 0.12 4.1E-06 37.9 6.4 90 77-184 25-117 (121)
117 2vsy_A XCC0866; transferase, g 94.1 0.27 9.2E-06 46.1 10.3 59 150-208 89-158 (568)
118 3q49_B STIP1 homology and U bo 93.9 0.19 6.6E-06 36.7 7.3 90 77-184 17-109 (137)
119 2fbn_A 70 kDa peptidylprolyl i 93.9 0.74 2.5E-05 36.3 11.3 105 105-213 39-155 (198)
120 3ma5_A Tetratricopeptide repea 93.8 0.27 9.3E-06 34.4 7.6 64 104-181 7-70 (100)
121 3rkv_A Putative peptidylprolyl 93.8 0.44 1.5E-05 36.3 9.4 103 106-212 13-129 (162)
122 4abn_A Tetratricopeptide repea 93.7 0.21 7.1E-06 46.1 8.5 88 105-207 138-250 (474)
123 2fbn_A 70 kDa peptidylprolyl i 93.7 0.32 1.1E-05 38.4 8.7 74 105-192 89-162 (198)
124 3ma5_A Tetratricopeptide repea 93.5 0.35 1.2E-05 33.8 7.7 56 151-206 6-69 (100)
125 2kat_A Uncharacterized protein 93.4 0.48 1.6E-05 33.6 8.6 57 150-206 17-81 (115)
126 2kat_A Uncharacterized protein 93.3 0.39 1.3E-05 34.1 7.9 66 104-183 19-84 (115)
127 2pzi_A Probable serine/threoni 93.0 0.15 5.1E-06 49.4 6.6 170 86-275 378-562 (681)
128 2ooe_A Cleavage stimulation fa 93.0 0.22 7.7E-06 46.2 7.6 90 105-207 273-385 (530)
129 1wao_1 Serine/threonine protei 92.9 0.49 1.7E-05 43.7 9.8 79 112-192 14-114 (477)
130 2yhc_A BAMD, UPF0169 lipoprote 92.9 1.3 4.4E-05 35.8 11.3 91 116-208 108-214 (225)
131 1wao_1 Serine/threonine protei 92.9 0.62 2.1E-05 43.0 10.3 59 105-177 75-135 (477)
132 3mv2_B Coatomer subunit epsilo 92.8 0.3 1E-05 42.7 7.6 91 105-207 101-207 (310)
133 2ooe_A Cleavage stimulation fa 92.6 1.1 3.6E-05 41.5 11.7 69 101-182 317-386 (530)
134 2if4_A ATFKBP42; FKBP-like, al 92.4 0.3 1E-05 42.8 7.2 86 106-205 232-326 (338)
135 1kt0_A FKBP51, 51 kDa FK506-bi 92.3 0.61 2.1E-05 42.7 9.5 97 77-192 276-391 (457)
136 4f3v_A ESX-1 secretion system 92.3 0.65 2.2E-05 39.9 8.9 144 17-214 109-257 (282)
137 3qky_A Outer membrane assembly 92.0 1.4 4.7E-05 36.3 10.6 118 77-207 23-177 (261)
138 1qqe_A Vesicular transport pro 91.9 1.3 4.3E-05 37.6 10.4 167 27-205 33-226 (292)
139 1ihg_A Cyclophilin 40; ppiase 91.3 1 3.6E-05 39.9 9.6 105 106-212 225-339 (370)
140 2l6j_A TPR repeat-containing p 90.8 0.84 2.9E-05 31.6 7.0 62 150-213 2-71 (111)
141 1kt0_A FKBP51, 51 kDa FK506-bi 90.8 1.4 4.7E-05 40.3 10.1 106 105-215 269-386 (457)
142 2hr2_A Hypothetical protein; a 90.6 2.3 7.8E-05 33.1 9.7 97 107-206 14-130 (159)
143 2if4_A ATFKBP42; FKBP-like, al 90.4 1.1 3.7E-05 39.1 8.7 104 105-212 180-296 (338)
144 3rkv_A Putative peptidylprolyl 90.3 1.1 3.8E-05 33.9 7.8 68 105-186 64-131 (162)
145 2yhc_A BAMD, UPF0169 lipoprote 90.3 3 0.0001 33.5 10.8 95 106-214 6-130 (225)
146 1xi4_A Clathrin heavy chain; a 89.5 1.3 4.5E-05 46.4 9.4 93 77-178 1113-1221(1630)
147 1na3_A Designed protein CTPR2; 89.3 1.4 4.7E-05 29.2 6.9 57 151-207 8-72 (91)
148 1xi4_A Clathrin heavy chain; a 89.3 2.6 9E-05 44.3 11.4 82 105-192 1222-1320(1630)
149 1ouv_A Conserved hypothetical 89.1 8.2 0.00028 31.5 13.3 103 82-208 55-180 (273)
150 3qww_A SET and MYND domain-con 88.9 1.2 4.1E-05 40.7 8.0 68 105-180 341-410 (433)
151 1qqe_A Vesicular transport pro 88.9 1.7 5.8E-05 36.7 8.6 73 105-184 159-231 (292)
152 3qky_A Outer membrane assembly 88.8 5.1 0.00017 32.7 11.4 91 105-207 16-126 (261)
153 3n71_A Histone lysine methyltr 88.3 2.5 8.5E-05 39.2 9.8 84 113-204 318-419 (490)
154 4g1t_A Interferon-induced prot 88.3 4.3 0.00015 36.2 11.3 179 86-282 233-465 (472)
155 2ifu_A Gamma-SNAP; membrane fu 88.1 1.9 6.4E-05 36.8 8.4 96 105-212 117-226 (307)
156 2c2l_A CHIP, carboxy terminus 88.0 0.76 2.6E-05 38.9 5.7 88 105-206 5-100 (281)
157 3gw4_A Uncharacterized protein 88.0 2.1 7.1E-05 33.1 8.0 94 104-205 26-134 (203)
158 3qou_A Protein YBBN; thioredox 87.9 2.9 0.0001 35.2 9.4 65 105-183 118-182 (287)
159 2pzi_A Probable serine/threoni 87.8 2.3 7.9E-05 41.0 9.6 96 80-192 402-507 (681)
160 1ihg_A Cyclophilin 40; ppiase 87.6 6.4 0.00022 34.7 11.8 74 105-192 274-347 (370)
161 1zu2_A Mitochondrial import re 86.7 2.3 7.8E-05 33.1 7.2 91 105-209 37-149 (158)
162 3qww_A SET and MYND domain-con 86.6 2.9 0.0001 38.1 9.1 79 116-204 310-408 (433)
163 3qwp_A SET and MYND domain-con 86.4 1.9 6.4E-05 39.3 7.7 68 105-180 330-399 (429)
164 1ouv_A Conserved hypothetical 85.7 8.1 0.00028 31.6 10.9 99 105-208 7-144 (273)
165 4gcn_A Protein STI-1; structur 85.1 3.4 0.00012 30.0 7.3 54 153-206 9-70 (127)
166 2r5s_A Uncharacterized protein 85.1 2.1 7.2E-05 32.9 6.5 140 20-180 16-172 (176)
167 2v5f_A Prolyl 4-hydroxylase su 84.7 5.3 0.00018 27.9 8.0 76 106-188 7-82 (104)
168 4a1s_A PINS, partner of inscut 84.1 3.4 0.00011 36.1 8.1 92 105-206 49-154 (411)
169 3qwp_A SET and MYND domain-con 83.6 4.9 0.00017 36.5 9.1 85 110-204 293-397 (429)
170 4a1s_A PINS, partner of inscut 83.5 2.1 7.3E-05 37.4 6.5 94 77-181 56-155 (411)
171 3ro2_A PINS homolog, G-protein 83.2 5.1 0.00017 33.2 8.6 65 106-180 7-71 (338)
172 3u3w_A Transcriptional activat 82.8 6.1 0.00021 33.0 9.0 121 76-206 82-224 (293)
173 3ro3_A PINS homolog, G-protein 82.8 3.2 0.00011 30.2 6.4 66 106-180 11-77 (164)
174 3ro2_A PINS homolog, G-protein 82.3 2.9 0.0001 34.7 6.7 68 105-181 184-252 (338)
175 2kc7_A BFR218_protein; tetratr 81.7 3.2 0.00011 28.0 5.7 49 159-207 7-64 (99)
176 3sf4_A G-protein-signaling mod 81.4 3.3 0.00011 35.7 7.0 93 105-206 188-295 (406)
177 3q15_A PSP28, response regulat 81.3 3.9 0.00013 35.6 7.4 55 76-133 229-290 (378)
178 4g1t_A Interferon-induced prot 81.1 24 0.00081 31.2 12.8 84 86-180 36-122 (472)
179 3ulq_A Response regulator aspa 80.9 3.2 0.00011 36.2 6.6 53 76-132 231-292 (383)
180 2hr2_A Hypothetical protein; a 80.8 2.5 8.6E-05 32.9 5.2 80 105-192 58-142 (159)
181 3ulq_A Response regulator aspa 80.5 4.3 0.00015 35.3 7.4 93 105-206 185-292 (383)
182 2ifu_A Gamma-SNAP; membrane fu 80.2 13 0.00044 31.3 10.2 71 105-185 156-227 (307)
183 3sf4_A G-protein-signaling mod 79.0 6.7 0.00023 33.7 8.1 66 105-180 10-75 (406)
184 3bee_A Putative YFRE protein; 78.6 9.2 0.00032 26.3 7.2 59 150-208 4-73 (93)
185 3q15_A PSP28, response regulat 76.7 7.7 0.00026 33.7 7.8 94 105-207 183-290 (378)
186 3u3w_A Transcriptional activat 76.6 22 0.00075 29.5 10.5 88 107-206 78-183 (293)
187 1hz4_A MALT regulatory protein 75.7 26 0.00087 29.9 10.9 119 76-205 142-280 (373)
188 4f3v_A ESX-1 secretion system 74.8 15 0.00051 31.3 8.8 115 77-208 110-238 (282)
189 2qfc_A PLCR protein; TPR, HTH, 74.0 33 0.0011 28.3 10.9 90 107-206 118-224 (293)
190 3gw4_A Uncharacterized protein 73.9 10 0.00036 28.9 7.2 94 77-181 34-136 (203)
191 3ro3_A PINS homolog, G-protein 71.4 7.5 0.00026 28.0 5.6 66 106-180 51-117 (164)
192 3bee_A Putative YFRE protein; 71.2 22 0.00075 24.3 10.4 67 104-184 6-75 (93)
193 1zu2_A Mitochondrial import re 70.8 11 0.00038 29.1 6.4 86 115-216 13-127 (158)
194 3rjv_A Putative SEL1 repeat pr 70.0 25 0.00084 27.7 8.8 31 153-183 86-120 (212)
195 4e6h_A MRNA 3'-END-processing 70.0 12 0.00043 36.0 8.0 103 106-208 436-571 (679)
196 1pc2_A Mitochondria fission pr 68.4 18 0.00061 27.7 7.1 77 102-190 30-109 (152)
197 4e6h_A MRNA 3'-END-processing 67.9 6.2 0.00021 38.2 5.3 70 105-185 505-574 (679)
198 3u64_A Protein TP_0956; tetrat 66.9 39 0.0013 29.0 9.6 87 104-205 199-296 (301)
199 2qfc_A PLCR protein; TPR, HTH, 66.2 24 0.00081 29.2 8.3 94 77-181 123-225 (293)
200 3ly7_A Transcriptional activat 61.9 25 0.00084 31.3 7.6 67 103-184 276-342 (372)
201 1hz4_A MALT regulatory protein 61.0 41 0.0014 28.6 9.0 122 77-207 61-203 (373)
202 4b4t_Q 26S proteasome regulato 59.8 21 0.00071 31.2 7.0 70 112-181 12-84 (434)
203 2ff4_A Probable regulatory pro 59.4 31 0.001 30.6 8.0 59 108-180 175-233 (388)
204 1v54_E Cytochrome C oxidase po 56.1 34 0.0012 24.4 6.0 44 149-192 42-85 (109)
205 1klx_A Cysteine rich protein B 54.1 58 0.002 23.5 7.7 56 110-181 31-90 (138)
206 3dra_A Protein farnesyltransfe 52.4 59 0.002 27.7 8.4 89 86-192 130-226 (306)
207 3e4b_A ALGK; tetratricopeptide 49.2 1.4E+02 0.0049 26.5 12.7 52 154-205 178-244 (452)
208 2p58_C Putative type III secre 49.0 50 0.0017 23.5 5.9 27 150-178 69-95 (116)
209 1dce_A Protein (RAB geranylger 48.6 41 0.0014 31.5 7.3 147 4-192 54-232 (567)
210 3e4b_A ALGK; tetratricopeptide 48.5 1.4E+02 0.0046 26.6 10.6 31 105-135 177-210 (452)
211 4b4t_Q 26S proteasome regulato 48.5 47 0.0016 28.8 7.4 69 105-181 136-204 (434)
212 3rjv_A Putative SEL1 repeat pr 45.8 1E+02 0.0035 23.9 10.4 78 86-181 73-158 (212)
213 2xm6_A Protein corresponding t 44.9 1.1E+02 0.0039 27.2 9.6 14 27-40 59-72 (490)
214 2nsz_A Programmed cell death p 44.2 37 0.0013 25.0 5.0 59 154-212 9-77 (129)
215 3q7a_A Farnesyltransferase alp 43.7 81 0.0028 27.6 7.9 89 86-192 145-248 (349)
216 3dss_A Geranylgeranyl transfer 43.6 1.5E+02 0.0052 25.5 9.7 93 105-213 145-271 (331)
217 2uwj_G Type III export protein 42.8 49 0.0017 23.6 5.0 31 149-181 67-97 (115)
218 1wy6_A Hypothetical protein ST 40.5 1.2E+02 0.0041 23.1 8.8 62 149-210 88-157 (172)
219 2xm6_A Protein corresponding t 39.2 1.7E+02 0.0058 26.0 9.8 104 83-210 310-435 (490)
220 3mkq_A Coatomer beta'-subunit; 38.4 62 0.0021 30.8 7.0 28 105-132 682-709 (814)
221 2y69_E Cytochrome C oxidase su 38.2 84 0.0029 23.7 6.0 44 149-192 85-128 (152)
222 2ion_A PDCD4, programmed cell 38.0 51 0.0017 25.1 5.0 59 154-212 11-79 (152)
223 3ly7_A Transcriptional activat 35.0 93 0.0032 27.5 6.9 103 102-207 192-339 (372)
224 3u64_A Protein TP_0956; tetrat 34.1 1.7E+02 0.0057 25.1 8.0 59 152-210 199-272 (301)
225 1zbp_A Hypothetical protein VP 31.4 2.3E+02 0.008 23.8 9.8 87 112-212 5-92 (273)
226 3q7a_A Farnesyltransferase alp 31.0 2.6E+02 0.009 24.2 9.3 99 107-207 57-196 (349)
227 3dra_A Protein farnesyltransfe 30.9 2.4E+02 0.0083 23.8 9.4 69 110-192 39-109 (306)
228 1oai_A Nuclear RNA export fact 29.4 13 0.00045 23.5 0.3 22 261-282 34-55 (59)
229 1nzn_A CGI-135 protein, fissio 28.7 56 0.0019 24.1 3.7 72 106-190 37-112 (126)
230 1v54_E Cytochrome C oxidase po 28.5 88 0.003 22.3 4.4 58 86-147 30-87 (109)
231 1v3f_A Pleckstrin 2; three-hel 28.3 1.3E+02 0.0046 21.7 5.8 34 102-135 35-71 (120)
232 2ff4_A Probable regulatory pro 25.7 1.4E+02 0.0049 26.1 6.6 111 105-216 113-248 (388)
233 3mkq_B Coatomer subunit alpha; 25.1 1.9E+02 0.0064 22.6 6.4 46 115-179 16-61 (177)
234 4b4t_R RPN7, 26S proteasome re 23.7 3.4E+02 0.012 24.0 8.8 65 106-181 133-197 (429)
235 2uy1_A Cleavage stimulation fa 23.0 2.9E+02 0.01 24.9 8.4 24 155-178 357-380 (493)
236 1wy6_A Hypothetical protein ST 22.6 2.6E+02 0.0088 21.3 8.1 65 105-183 92-156 (172)
237 1zbp_A Hypothetical protein VP 20.0 3.9E+02 0.013 22.4 8.6 102 79-185 7-133 (273)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.7e-26 Score=218.88 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=144.5
Q ss_pred ehHHHHHhh---cccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCC-------
Q 044945 15 ELSNGLAGC---NEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGS------- 84 (296)
Q Consensus 15 s~n~~~~~~---~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~------- 84 (296)
.++.+|..| |+ +++|.++|++|+++|+.+ + .++|+.+|++|++.+.
T Consensus 28 ~l~~~id~c~k~G~-~~~A~~lf~~M~~~Gv~p----d-------------------~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 28 LLKQKLDMCSKKGD-VLEALRLYDEARRNGVQL----S-------------------QYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp HHHHHHHHTTTSCC-HHHHHHHHHHHHHHTCCC----C-------------------HHHHHHHHHHHTTCCCCSSSSCC
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCC----C-------------------HhHHHHHHHHHHhCCchhhhhhc
Confidence 456655544 76 999999999999987652 2 2345555666665544
Q ss_pred --H---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHH
Q 044945 85 --V---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLL 159 (296)
Q Consensus 85 --~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li 159 (296)
+ .++|++|.+.|+ .||.+|||+||++|++.|++++|+++|++|.+.|+. ||..|||+||
T Consensus 84 ~~l~~A~~lf~~M~~~G~---~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-------------Pd~~tyn~lI 147 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKV---VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-------------PRLRSYGPAL 147 (501)
T ss_dssp HHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-------------CCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CccceehHHH
Confidence 4 789999999999 999999999999999999999999999999999994 7888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-CCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecch
Q 044945 160 SACRVHRNVELAEKVADMILMIE-PNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEE 222 (296)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~ 222 (296)
.+|++.|++++|.++|++|.+.+ .||..+|++| ..++|.++|++|++.|..|+..|+......
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999999987 4799999999 789999999999999999999998665443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=6.1e-27 Score=221.89 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=151.8
Q ss_pred ccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCC---------hhHHHHHHHHHHHcCCccChh
Q 044945 73 GVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGP---------FDEGLKFFGQMLMAKIKARHA 140 (296)
Q Consensus 73 ~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~---------~~~A~~l~~~M~~~g~~pd~~ 140 (296)
+..|++|||.|++ .++|++|+++|+ .||.+|||+||++|++.+. +++|.++|++|.+.|+.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv---~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~---- 102 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGV---QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV---- 102 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC----
Confidence 4458999999999 999999999999 9999999999999998776 68899999999999994
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchhHHh--------hHHHHHHHHHHHHhCCCcC
Q 044945 141 PFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE-PNNTGAYVIL--------INEALKDLLERMEQEGYVP 211 (296)
Q Consensus 141 ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p 211 (296)
||..|||+||++|++.|++++|.++|++|.+.+ .||..+|+++ ..++|.++|++|.+.|+.|
T Consensus 103 ---------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 103 ---------PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp ---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred ---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 688889999999999999999999999999987 5799999999 6899999999999999999
Q ss_pred CCccceeecchhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecccCccchhhHHHHHhhhhcceEEEecCCccchhcc
Q 044945 212 DTKEVLLDVEEEQKKNILYYHGERLALVFGIISTPDGTTIRVIKNLPSLRGLRHGNKVVSKIVHREMIVRDNRRFCRHFL 291 (296)
Q Consensus 212 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~k~g~~~~A~~~f~~m~~r~~~~~~~~~~~~~~~ 291 (296)
|..|| ..+ |++|++.|+.++|.++|++|.+.++.| +..+|...+.
T Consensus 174 d~~ty------------------------~~L----------i~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~ 218 (501)
T 4g26_A 174 EEPEL------------------------AAL----------LKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEE 218 (501)
T ss_dssp CHHHH------------------------HHH----------HHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHH
T ss_pred CHHHH------------------------HHH----------HHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHH
Confidence 98764 111 788999999999999999999888775 6677776666
Q ss_pred ccc
Q 044945 292 LFR 294 (296)
Q Consensus 292 ~~~ 294 (296)
.|+
T Consensus 219 ~F~ 221 (501)
T 4g26_A 219 WFK 221 (501)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=9.6e-21 Score=187.18 Aligned_cols=126 Identities=7% Similarity=-0.060 Sum_probs=108.5
Q ss_pred hhcccccccccccCCH---HHHHhhccc---CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhh
Q 044945 70 FDGGVDGLRPSRSGSV---RKVFEIMAV---RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFS 143 (296)
Q Consensus 70 ~~~~~~i~~y~k~g~~---~~~f~~M~~---~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 143 (296)
++++++|++|||+|++ .++|++|.+ +++ .||++|||+||+|||+.|++++|.++|++|.+.|+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-------- 196 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-------- 196 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence 5899999999999999 999988764 467 99999999999999999999999999999999999
Q ss_pred hhhccCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC-CCCcchhHHh----hHHHHHHHHHHHHhCCCcCC
Q 044945 144 RIMHAGSTENVWLTLLSACRVHRN-VELAEKVADMILMIE-PNNTGAYVIL----INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 144 ~li~~~p~~~~~~~Li~~~~~~g~-~~~A~~~~~~m~~~~-~~~~~~y~~l----~~~~a~~l~~~M~~~g~~p~ 212 (296)
.||++|||+||+++|+.|+ .++|.++|++|.+.+ .||.++|+++ .-+.+.+..+++ ..++.|+
T Consensus 197 -----~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 197 -----TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp -----CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-CCCCCCC
T ss_pred -----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-CcccCCC
Confidence 4788889999999999998 478999999999998 4799999988 333444444444 5677775
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=172.59 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=103.0
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHH---cCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLM---AKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~---~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.+|||+||+|||+.|++++|.++|.+|.+ .|+ .||++|||+||+|||+.|++++|.++|++|.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~-------------~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK-------------LLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT-------------TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC-------------CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999998874 477 57999999999999999999999999999999
Q ss_pred cC-CCCcchhHHh---------hHHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhh
Q 044945 181 IE-PNNTGAYVIL---------INEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYY 231 (296)
Q Consensus 181 ~~-~~~~~~y~~l---------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~ 231 (296)
.+ .||.+||+++ ..++|.++|++|.+.|+.||..|+...+.+.+++..+..
T Consensus 194 ~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 88 4799999999 247889999999999999999999988888877765543
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.57 E-value=2.4e-15 Score=143.38 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=142.0
Q ss_pred CCCCeeehHHHHHhh---cccHHHHHHHHHHhHhcccC-------------CCccccHHHHHhcCCCccCCceehhhhhc
Q 044945 9 ERNENVELSNGLAGC---NEFMDKANGITDRFEERAVS-------------IGHYADLDGISDQLPSSSGGRQVDIHFDG 72 (296)
Q Consensus 9 ~~pd~vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~~-------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~ 72 (296)
+.|++.+|+.++..+ |+ +++|.++|++|.+.... .|.+..|..++..+..... ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ 153 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR-----SSACR 153 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGT-----CHHHH
T ss_pred hHHHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcccc-----chhHH
Confidence 456888899877655 65 99999999999854322 5666777777776643321 22345
Q ss_pred ccccccccccCCH---HHHHhhcc-cC--------------CcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 044945 73 GVDGLRPSRSGSV---RKVFEIMA-VR--------------DFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAK 134 (296)
Q Consensus 73 ~~~i~~y~k~g~~---~~~f~~M~-~~--------------~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g 134 (296)
+.+..+|.++|++ .++|+++. .. +. .++..+|+.++.+|.+.|+.++|+++|++|.+.+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI---KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6678999999999 88998543 32 22 3456899999999999999999999999998854
Q ss_pred CccChh-h--------------------------------------hhhhhcc--------------------CCCHHHH
Q 044945 135 IKARHA-P--------------------------------------FSRIMHA--------------------GSTENVW 155 (296)
Q Consensus 135 ~~pd~~-t--------------------------------------y~~li~~--------------------~p~~~~~ 155 (296)
|+.. . |+.++.. .+|..+|
T Consensus 231 --p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (597)
T 2xpi_A 231 --AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308 (597)
T ss_dssp --TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHH
T ss_pred --chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHH
Confidence 3321 1 2222333 4899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 156 LTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 156 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+.++.+|.+.|++++|..+|+++.+..|.+..+|..+ ..++|.+++++|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999998888788888777 578888888888743
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.53 E-value=7.4e-15 Score=140.01 Aligned_cols=253 Identities=6% Similarity=-0.101 Sum_probs=168.7
Q ss_pred CeeehHHH---HHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccC-----------------Cceehhhhh
Q 044945 12 ENVELSNG---LAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSG-----------------GRQVDIHFD 71 (296)
Q Consensus 12 d~vs~n~~---~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~-----------------~~~~~~~~~ 71 (296)
|+++|+.+ +.+.|+ +++|.++|++|.+.+.. ..++............ ...-.....
T Consensus 199 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSN-FDRAKECYKEALMVDAK---CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCch---hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 67889875 444576 99999999999986532 1122111111110000 000000113
Q ss_pred cccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 72 GGVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 72 ~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
++.++++|++.|++ .++|++|.+. .+|..+|+.++.+|.+.|+.++|+++|++|.+.+- .+..+|+.++..
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 348 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLAS 348 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHH
Confidence 45567899999999 8999998763 24559999999999999999999999999998663 366777776665
Q ss_pred ---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHH
Q 044945 149 ---------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKD 199 (296)
Q Consensus 149 ---------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~ 199 (296)
+.+..+|+.+..+|.+.|++++|.++|+++.+..|.+..+|+.+ ..++|.+
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45789999999999999999999999999999888888888888 6899999
Q ss_pred HHHHHHhCCCcCCCccceeecchhhhhhhhhhhhHHHHHHHHhhcCCC-CCeEEEEecccCccchhhHHHHHhhhhcc
Q 044945 200 LLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLALVFGIISTPD-GTTIRVIKNLPSLRGLRHGNKVVSKIVHR 276 (296)
Q Consensus 200 l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~k~g~~~~A~~~f~~m~~r 276 (296)
+|++|.+.+. ++..++..........+........+...... .+.. .....+...|.+.|+.++|.++|+++.+.
T Consensus 429 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 429 AYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999987642 23333322222222211111111111111111 1111 11112367799999999999999999764
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.77 E-value=1.4e-08 Score=91.50 Aligned_cols=251 Identities=9% Similarity=0.015 Sum_probs=149.1
Q ss_pred CeeehHHH---HHhhcccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhccc
Q 044945 12 ENVELSNG---LAGCNEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGV 74 (296)
Q Consensus 12 d~vs~n~~---~~~~~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 74 (296)
+..+|+.+ +.+.|+ +++|.+.|+++.+.... .|.+..|...+....... +.. ...+..
T Consensus 66 ~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~ 140 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQ-LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDL--YCVRSD 140 (388)
T ss_dssp CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTC--THHHHH
T ss_pred chHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc--HHHHHH
Confidence 44455543 334465 88888888877664321 233444444443322111 100 001112
Q ss_pred ccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccCh-hhhhhhhcc--
Q 044945 75 DGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARH-APFSRIMHA-- 148 (296)
Q Consensus 75 ~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~li~~-- 148 (296)
+-..|.+.|++ .+.|+++.+.+- -+..+|+.+...|.+.|+.++|.+.|+++.+.. |+. ..|..+-..
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQP----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence 23567777888 778887765321 124789999999999999999999999998743 442 233322211
Q ss_pred ------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHH
Q 044945 149 ------------------GS-TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLL 201 (296)
Q Consensus 149 ------------------~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~ 201 (296)
.| +..+|+.+...|.+.|++++|...|+++.+..|.+..+|..+ ..++|.+.+
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44 578999999999999999999999999999888777777776 679999999
Q ss_pred HHHHhCCCcCCCccceeecchh-hhhhhhhhhhHHHHHHHHhhcCCCC-CeEEEEecccCccchhhHHHHHhhhhcc
Q 044945 202 ERMEQEGYVPDTKEVLLDVEEE-QKKNILYYHGERLALVFGIISTPDG-TTIRVIKNLPSLRGLRHGNKVVSKIVHR 276 (296)
Q Consensus 202 ~~M~~~g~~p~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~~~~k~g~~~~A~~~f~~m~~r 276 (296)
+++.+. .|+....+..++.. ...+........+..+... .+... ....+...|.+.|+.++|.+.|+++.+.
T Consensus 295 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 295 NTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 998875 35432222111111 1111000000000011100 11110 0011245688999999999999998763
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.64 E-value=5e-08 Score=89.16 Aligned_cols=189 Identities=7% Similarity=0.027 Sum_probs=124.0
Q ss_pred CeeehHHH---HHhhcccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhccc
Q 044945 12 ENVELSNG---LAGCNEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGV 74 (296)
Q Consensus 12 d~vs~n~~---~~~~~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 74 (296)
++.+|..+ +.+.|+ +++|.++|+++.+.... .|.+..|...+......... ....+..
T Consensus 25 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----FTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----cHHHHHH
Confidence 44555543 344476 99999999998875432 45556666655544322211 0112233
Q ss_pred ccccccccCCH---HHHHhhcccCCcccCCCce---eeHHHHHHH------------HhccCChhHHHHHHHHHHHcCCc
Q 044945 75 DGLRPSRSGSV---RKVFEIMAVRDFLEYCDYA---ISRNSITAG------------CGQNGPFDEGLKFFGQMLMAKIK 136 (296)
Q Consensus 75 ~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~---~t~n~li~~------------~~~~g~~~~A~~l~~~M~~~g~~ 136 (296)
+...|.+.|++ .+.|+++.+.+- .+. ..|..++.. |.+.|+.++|.+.|+++.+..-
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 174 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNP----SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV- 174 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 45778888888 778888766432 223 456666444 8888999999999998877431
Q ss_pred cChhhhhhhhcc---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh---
Q 044945 137 ARHAPFSRIMHA---------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--- 192 (296)
Q Consensus 137 pd~~ty~~li~~---------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--- 192 (296)
.+..++..+... +.+..+|+.+...|.+.|++++|...|+++.+..|.+...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 244445444443 45678899999999999999999999999888777665554322
Q ss_pred -----------------hHHHHHHHHHHHHhCCCcCC
Q 044945 193 -----------------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 193 -----------------~~~~a~~l~~~M~~~g~~p~ 212 (296)
.+++|...|+++.+. .|+
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~ 289 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPS 289 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 578888888888763 455
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1e-06 Score=79.08 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=60.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.+|+.+...|.+.|+.++|.+.|+++.+.. +.+..+|+.+...|.+.|++++|...|+++.+..|.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 455555555555566666665555555432 224566777777788888888888888877777776
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhCCCcCC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~ 212 (296)
+..+|..+ ..++|.+.++++.+. .|+
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 337 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE 337 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 76666666 567777777777653 455
No 10
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.25 E-value=8.1e-06 Score=71.15 Aligned_cols=132 Identities=10% Similarity=0.016 Sum_probs=97.1
Q ss_pred cccccccCCHHHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-------
Q 044945 76 GLRPSRSGSVRKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA------- 148 (296)
Q Consensus 76 i~~y~k~g~~~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~------- 148 (296)
..+|...|+...+..+.+.. - .|+..++..+...|.+.|+.++|++.++++...+..|+..++..++..
T Consensus 41 ~r~yi~~g~~~~al~~~~~~-~---~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPS-S---APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTT-S---CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHhccc-C---ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 35677777775555555443 3 456678888888888888888888888888887777766555443322
Q ss_pred ----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-----hhHHh-----hHHHHHHHHHHHHhCC
Q 044945 149 ----------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG-----AYVIL-----INEALKDLLERMEQEG 208 (296)
Q Consensus 149 ----------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~y~~l-----~~~~a~~l~~~M~~~g 208 (296)
..+...+..+...|.+.|++++|.+.|+++.+..|.+.. .|..+ ..++|..+|+++.+.
T Consensus 117 ~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~- 195 (291)
T 3mkr_A 117 PDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK- 195 (291)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-
Confidence 367889999999999999999999999999988765431 22222 689999999999876
Q ss_pred CcCCC
Q 044945 209 YVPDT 213 (296)
Q Consensus 209 ~~p~~ 213 (296)
.|+.
T Consensus 196 -~p~~ 199 (291)
T 3mkr_A 196 -CSPT 199 (291)
T ss_dssp -SCCC
T ss_pred -CCCc
Confidence 5553
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.25 E-value=4.5e-06 Score=76.03 Aligned_cols=161 Identities=13% Similarity=0.019 Sum_probs=100.5
Q ss_pred HHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCC
Q 044945 20 LAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRD 96 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~ 96 (296)
+...|+ +++|.+.|+++.+.... . ...+..+..+|.+.|+. .+.|+++.+.+
T Consensus 153 ~~~~~~-~~~A~~~~~~~~~~~~~--~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 153 AFGSGD-YTAAIAFLDKILEVCVW--D----------------------AELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHTC-HHHHHHHHHHHHHHCTT--C----------------------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHcCC-HHHHHHHHHHHHHhCCC--C----------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444576 99999999998874321 0 00111223556666666 55555554321
Q ss_pred cccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhh-------------cc---------------
Q 044945 97 FLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIM-------------HA--------------- 148 (296)
Q Consensus 97 ~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li-------------~~--------------- 148 (296)
..+..+|+.+...|.+.|+.++|++.|+++.+. .|+..+....+ ..
T Consensus 208 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 208 ----NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp ----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 112256666667777777777777777666643 34333322111 00
Q ss_pred -----CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCc
Q 044945 149 -----GST-----ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYV 210 (296)
Q Consensus 149 -----~p~-----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~ 210 (296)
.|+ ...|..+...|.+.|++++|...++++.+..|.+...|..+ .+++|...+++..+ ..
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~ 359 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HN 359 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TS
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hC
Confidence 344 45788888888899999999999998888777777777666 67888888888776 45
Q ss_pred CCC
Q 044945 211 PDT 213 (296)
Q Consensus 211 p~~ 213 (296)
|+.
T Consensus 360 p~~ 362 (450)
T 2y4t_A 360 END 362 (450)
T ss_dssp SSC
T ss_pred cch
Confidence 654
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.08 E-value=1.1e-05 Score=71.60 Aligned_cols=170 Identities=4% Similarity=-0.123 Sum_probs=84.4
Q ss_pred HHhhcccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH
Q 044945 20 LAGCNEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV 85 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~ 85 (296)
+...|+ +++|.+.|+++.+.... .|.+..|...+......... ....+..+...|.+.|+.
T Consensus 75 ~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 75 RLKEGD-LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN----NLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred HHHCCC-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHccccH
Confidence 333465 88888888888765432 45556666655443322111 011223334667777777
Q ss_pred ---HHHHhhcccCCc---ccC---CCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHH
Q 044945 86 ---RKVFEIMAVRDF---LEY---CDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWL 156 (296)
Q Consensus 86 ---~~~f~~M~~~~~---~~~---~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~ 156 (296)
.+.|++..+.+- ..| ......++.+...|.+.|+.++|.+.|+++.+.. |+ .++..+|.
T Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----------~~~~~~~~ 217 (365)
T 4eqf_A 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GD----------MIDPDLQT 217 (365)
T ss_dssp HHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CS----------SCCHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cC----------ccCHHHHH
Confidence 666665543210 000 0011334445677777777777777777777642 21 11345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 157 TLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 157 ~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.+-..|.+.|++++|...|++..+..|.+..+|..+ ..++|...+++..+
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555556666666666666666555555555555444 44555555555544
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.06 E-value=0.00014 Score=63.29 Aligned_cols=48 Identities=6% Similarity=-0.204 Sum_probs=31.0
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHc
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMA 133 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~ 133 (296)
..|.+.|+. .+.|++ ..+. ..|..+...|.+.|+.++|.+.|+++.+.
T Consensus 109 ~~~~~~g~~~~Al~~l~~--~~~~-------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ--GDSL-------ECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT--CCSH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhC--CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 456666777 555554 1222 56777777777777777777777777664
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.06 E-value=2.1e-05 Score=69.43 Aligned_cols=161 Identities=10% Similarity=-0.006 Sum_probs=112.9
Q ss_pred HHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCC
Q 044945 20 LAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRD 96 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~ 96 (296)
+...|+ +++|...|+++.+.... .. ..+..+...|.+.|+. .+.|++..+.+
T Consensus 74 ~~~~g~-~~~A~~~~~~al~~~p~--~~----------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 128 (368)
T 1fch_A 74 RLQEGD-LPNAVLLFEAAVQQDPK--HM----------------------EAWQYLGTTQAENEQELLAISALRRCLELK 128 (368)
T ss_dssp HHHTTC-HHHHHHHHHHHHHSCTT--CH----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCC-HHHHHHHHHHHHHhCCC--CH----------------------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 334476 99999999999875321 00 0111223567778888 66777665432
Q ss_pred cccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhh--------------------------------
Q 044945 97 FLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSR-------------------------------- 144 (296)
Q Consensus 97 ~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~-------------------------------- 144 (296)
- .+..+|..+...|.+.|+.++|.+.|+++.+.. |+......
T Consensus 129 ~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 129 P----DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202 (368)
T ss_dssp T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHH
Confidence 1 234788889999999999999999999988754 32221111
Q ss_pred ----hhccCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCC
Q 044945 145 ----IMHAGS---TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGY 209 (296)
Q Consensus 145 ----li~~~p---~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~ 209 (296)
.+...| +..+|..+-..|.+.|++++|...|++..+..|.+..+|..+ ..++|...+++..+.
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 280 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-- 280 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 111144 478999999999999999999999999998888777777776 678999999888764
Q ss_pred cCCC
Q 044945 210 VPDT 213 (296)
Q Consensus 210 ~p~~ 213 (296)
.|+.
T Consensus 281 ~~~~ 284 (368)
T 1fch_A 281 QPGY 284 (368)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 3553
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.04 E-value=1.2e-05 Score=69.63 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=99.8
Q ss_pred cccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccC-CH---
Q 044945 24 NEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSG-SV--- 85 (296)
Q Consensus 24 ~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g-~~--- 85 (296)
|+ +++|.++|+++.+.... .|....+..++......... ....+..+-..|.+.| +.
T Consensus 36 g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~A 110 (330)
T 3hym_B 36 CD-FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS----NPVSWFAVGCYYLMVGHKNEHA 110 (330)
T ss_dssp TC-HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STHHHHHHHHHHHHSCSCHHHH
T ss_pred CC-HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhhhhHHHH
Confidence 65 99999999998876532 22233333333322211100 0001112235566666 66
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH 165 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~ 165 (296)
.+.|++..+.+- .+...|..+...|.+.|+.++|.+.|++..+.. +.+...|..+-..|...
T Consensus 111 ~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 111 RRYLSKATTLEK----TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------------KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHTTCT----TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------------TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------------cccHHHHHHHHHHHHHH
Confidence 666666544321 123567777788888888888888888776643 12345666677888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 166 RNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
|++++|...+++..+..|.+...|..+ .+++|...+++..+
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 888888888888887777676666666 56778777777665
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.6e-05 Score=70.97 Aligned_cols=125 Identities=14% Similarity=0.033 Sum_probs=93.2
Q ss_pred ccCCH---HHHHhhccc-----CCc--cc---CCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhc
Q 044945 81 RSGSV---RKVFEIMAV-----RDF--LE---YCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMH 147 (296)
Q Consensus 81 k~g~~---~~~f~~M~~-----~~~--~~---~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 147 (296)
+.|++ ...|+++.+ ..- .. ...+..+|..+...|.+.|+.++|.+.|++..+.. |+..+|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 57777 677776655 211 00 01123678889999999999999999999998865 44444444433
Q ss_pred c---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHH
Q 044945 148 A---------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALK 198 (296)
Q Consensus 148 ~---------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~ 198 (296)
. +.+..+|..+...|.+.|++++|...|++..+..|.+..+|..+ .+++|.
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3 44678899999999999999999999999998887777777766 678999
Q ss_pred HHHHHHHhC
Q 044945 199 DLLERMEQE 207 (296)
Q Consensus 199 ~l~~~M~~~ 207 (296)
..+++..+.
T Consensus 359 ~~~~~~~~~ 367 (514)
T 2gw1_A 359 TLFSEAKRK 367 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.95 E-value=6.7e-05 Score=66.09 Aligned_cols=168 Identities=11% Similarity=-0.048 Sum_probs=113.5
Q ss_pred HHhhcccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhh-------------c
Q 044945 20 LAGCNEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFD-------------G 72 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~-------------~ 72 (296)
+...|+ +++|.+.|++..+.... .|....|...+.......... ..... .
T Consensus 108 ~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 108 QAENEQ-ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--GGGCC--------------
T ss_pred HHHCcC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHhhhhcccHH
Confidence 334476 89999999988776532 444555555544332211100 00000 0
Q ss_pred ccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccC
Q 044945 73 GVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAG 149 (296)
Q Consensus 73 ~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 149 (296)
...+..+.+.|+. ...|+++.+.+-. .++..+|+.+...|.+.|+.++|.+.|++..+.. +
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------~ 248 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPT--SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------------P 248 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------T
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------c
Confidence 0012223366766 6777776543220 1135789999999999999999999999987742 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.+..+|..+-..|.+.|++++|...|++..+..|.+..+|..+ ..++|...+++..+
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999999998888777777766 67889888888765
No 18
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.91 E-value=0.00024 Score=59.13 Aligned_cols=145 Identities=10% Similarity=-0.007 Sum_probs=74.2
Q ss_pred HhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCCc
Q 044945 21 AGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDF 97 (296)
Q Consensus 21 ~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~ 97 (296)
...|+ +++|.+.|++..+.... . .. .+..+...|.+.|+. .+.|++..+.+-
T Consensus 48 ~~~~~-~~~A~~~~~~al~~~~~--~-~~---------------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 48 LQRGN-TEQAKVPLRKALEIDPS--S-AD---------------------AHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHTTC-TGGGHHHHHHHHHHCTT--C-HH---------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCC-hHHHHHHHHHHHhcCCC--h-HH---------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 33465 99999999998775321 0 00 011112344555555 444444433211
Q ss_pred ccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044945 98 LEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADM 177 (296)
Q Consensus 98 ~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 177 (296)
.+...|..+...|.+.|+.++|.+.|++..+.+..| .+...|..+...|.+.|++++|...|++
T Consensus 103 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 103 ----RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP------------ERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT------------THHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc------------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 122456666666666666666666666665522221 1334455555555555555555555555
Q ss_pred HHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 178 ILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 178 m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
..+..|.+...|..+ ..++|...+++..+
T Consensus 167 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 167 SLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555544444444333 34555555555443
No 19
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.89 E-value=0.0001 Score=54.25 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=66.9
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ ..+|+++.+.+. .+...|..+...|.+.|+.++|.+.|+++.+.+ +.+..
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~ 70 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PRSAE 70 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHcCC----cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------------CCchH
Confidence 344555666 555555543221 123556666667777777777777777765532 13445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.|..+...|.+.|++++|...++++.+..|.+...|..+ ..++|.+.++++.+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666667777777777777777777766655555444444 45666666666554
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.86 E-value=0.00015 Score=64.07 Aligned_cols=213 Identities=5% Similarity=-0.094 Sum_probs=122.1
Q ss_pred CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCCh
Q 044945 44 IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPF 120 (296)
Q Consensus 44 ~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~ 120 (296)
.|.+..|..++...-..... ....+..+...|.+.|+. .+.|++..+.+- .+..+|..+...|.+.|+.
T Consensus 78 ~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPG----DAEAWQFLGITQAENENEQAAIVALQRCLELQP----NNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHccccH
Confidence 35677777776655332211 111233445788889998 777877665321 2247899999999999999
Q ss_pred hHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchhHHh------
Q 044945 121 DEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN--NTGAYVIL------ 192 (296)
Q Consensus 121 ~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~y~~l------ 192 (296)
++|.+.|+++.+.. |+.......+ .....+++.+...|.+.|++++|...|+++.+..|. +..+|..+
T Consensus 150 ~~A~~~~~~al~~~--p~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 150 QDACEALKNWIKQN--PKYKYLVKNK--KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp HHHHHHHHHHHHHC--HHHHCC---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ccchHHHhhh--ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 99999999998743 3322111111 123445667788999999999999999999998876 67677666
Q ss_pred --hHHHHHHHHHHHHhCCCcCCCccceeecch-----hhhhhhhhhhhHHHHHHHHhhcCCCCC-eEEEEecccCccchh
Q 044945 193 --INEALKDLLERMEQEGYVPDTKEVLLDVEE-----EQKKNILYYHGERLALVFGIISTPDGT-TIRVIKNLPSLRGLR 264 (296)
Q Consensus 193 --~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ii~~~~k~g~~~ 264 (296)
..++|.+.+++..+. .|+....+..++. +...+....... +... .+.... ...+-..|.+.|+.+
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~----al~~-~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTR----ALEI-QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHH-CTTCHHHHHHHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhc-CCCchHHHHHHHHHHHHCCCHH
Confidence 679999999988765 4553333222211 111111111111 1111 111110 011145588899999
Q ss_pred hHHHHHhhhhc
Q 044945 265 HGNKVVSKIVH 275 (296)
Q Consensus 265 ~A~~~f~~m~~ 275 (296)
+|.+.|++..+
T Consensus 299 ~A~~~~~~al~ 309 (365)
T 4eqf_A 299 EAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.84 E-value=3.9e-05 Score=66.21 Aligned_cols=157 Identities=10% Similarity=-0.008 Sum_probs=106.9
Q ss_pred HhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCCc
Q 044945 21 AGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDF 97 (296)
Q Consensus 21 ~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~ 97 (296)
...|+ +++|..+|+++.+.... .. ..+..+...|.+.|+. .+.|++..+.+-
T Consensus 32 ~~~~~-~~~A~~~~~~~~~~~~~--~~----------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 32 LKLAN-LAEAALAFEAVCQAAPE--RE----------------------EAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTT--CH----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcc-HHHHHHHHHHHHHhCCC--CH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 33466 99999999998874321 00 0111123456777777 666666654321
Q ss_pred ccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhh--------------h---cc------------
Q 044945 98 LEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRI--------------M---HA------------ 148 (296)
Q Consensus 98 ~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l--------------i---~~------------ 148 (296)
.+..+|..+...|.+.|+.++|.+.|++..+..-. +...+..+ - ..
T Consensus 87 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 87 ----KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 23367888888889999999999999888764311 11122111 0 11
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 149 -------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 149 -------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+.+..+|..+...|.+.|++++|...+++..+..|.+..+|..+ ..++|.+.+++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34678899999999999999999999999988877777777666 678899999887764
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.84 E-value=3.8e-05 Score=70.71 Aligned_cols=104 Identities=7% Similarity=0.047 Sum_probs=14.2
Q ss_pred eehHHHHHhh---cccHHHHHHHHHHhHhccc---------CCCccccHHHHHhcCCCccCCceehhhhhcccccccccc
Q 044945 14 VELSNGLAGC---NEFMDKANGITDRFEERAV---------SIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSR 81 (296)
Q Consensus 14 vs~n~~~~~~---~~~~~~A~~~f~~M~~~~~---------~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k 81 (296)
-+|+.+.... |+ +++|++.|.+...... ..|.++++..++........ +....+.++.+|+|
T Consensus 33 ~vWs~La~A~l~~g~-~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-----~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 33 AVWSQLAKAQLQKGM-VKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-----ESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-----cchhHHHHHHHHHH
Confidence 4777654443 55 8888888876543221 04455555555443332111 11223445679999
Q ss_pred cCCHHHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHH
Q 044945 82 SGSVRKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQM 130 (296)
Q Consensus 82 ~g~~~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M 130 (296)
.|++.++-+-... |+..+|+.+-..|...|++++|...|..+
T Consensus 107 lg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 107 TNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp --CHHHHTTTTTC-------C----------------CTTTHHHHHHHT
T ss_pred hCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999333332333 33367888777777777777777777765
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.82 E-value=5.6e-06 Score=76.27 Aligned_cols=146 Identities=14% Similarity=0.057 Sum_probs=25.7
Q ss_pred hHHHHHhhcccHHHHHHHHHHhHhcccC---------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH-
Q 044945 16 LSNGLAGCNEFMDKANGITDRFEERAVS---------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV- 85 (296)
Q Consensus 16 ~n~~~~~~~~~~~~A~~~f~~M~~~~~~---------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~- 85 (296)
-+.++.++|. +++|.++++++....+= .|.+++|+..+-..+ +...+...++.+...|++
T Consensus 9 ~~~ll~~~~~-ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~---------D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 9 VQVLIEHIGN-LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD---------DPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccC-HHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCC---------CHHHHHHHHHHHHhCCCHH
Confidence 3457777787 99999999998664321 334444444442211 111222233444555555
Q ss_pred --HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHH
Q 044945 86 --RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACR 163 (296)
Q Consensus 86 --~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~ 163 (296)
.+.++ |-.++. |+..+.+.++.+|++.|+++++.++++ .|+..+|+.+-+.|.
T Consensus 79 eAi~yl~-~ark~~----~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------------------~pn~~a~~~IGd~~~ 133 (449)
T 1b89_A 79 ELVKYLQ-MARKKA----RESYVETELIFALAKTNRLAELEEFIN--------------------GPNNAHIQQVGDRCY 133 (449)
T ss_dssp -----------------------------------CHHHHTTTTT--------------------CC-------------
T ss_pred HHHHHHH-HHHHhC----ccchhHHHHHHHHHHhCCHHHHHHHHc--------------------CCcHHHHHHHHHHHH
Confidence 33222 222222 334555566666666666666555553 456667777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHH
Q 044945 164 VHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M 204 (296)
..|++++|...|..+. .|.-+ .+++|.+.+.+.
T Consensus 134 ~~g~yeeA~~~Y~~a~--------n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 134 DEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp ---CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHhh--------hHHHHHHHHHHhccHHHHHHHHHHc
Confidence 7778887777777651 23333 567777777666
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.82 E-value=0.00034 Score=56.62 Aligned_cols=145 Identities=12% Similarity=-0.037 Sum_probs=88.5
Q ss_pred HhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCCc
Q 044945 21 AGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDF 97 (296)
Q Consensus 21 ~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~ 97 (296)
...|+ +++|.+.|++..+.... . +. .+..+...|.+.|+. .+.|++..+.+-
T Consensus 19 ~~~~~-~~~A~~~~~~~~~~~~~--~-~~---------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 19 MRGQD-YRQATASIEDALKSDPK--N-EL---------------------AWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTT--C-HH---------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh-HHHHHHHHHHHHHhCcc--c-hH---------------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 33476 99999999998875321 0 00 111123455666666 555555543211
Q ss_pred ccCCCceeeHHHHHHHHhcc-CChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044945 98 LEYCDYAISRNSITAGCGQN-GPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVAD 176 (296)
Q Consensus 98 ~~~~p~~~t~n~li~~~~~~-g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~ 176 (296)
.+..+|..+...|.+. |+.++|.+.|++..+.+..| .+...|..+-..|.+.|++++|...|+
T Consensus 74 ----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 74 ----DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP------------TPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp ----TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS------------CHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc------------chHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1235677777777888 88888888887776622211 234566666777777777777777777
Q ss_pred HHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 177 MILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 177 ~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+..+..|.+...|..+ ..++|...+++..+
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 138 RSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7776666555555544 45667777766655
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.81 E-value=0.00027 Score=60.74 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=88.9
Q ss_pred ccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHH
Q 044945 79 PSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVW 155 (296)
Q Consensus 79 y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~ 155 (296)
|.+.|+. .+.|++..+.+- .+...|..+...|.+.|+.++|.+.|++..+.. +.+..+|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~ 209 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNP----NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------------PDDAQLW 209 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------CCcHHHH
Confidence 6666777 666776654321 234789999999999999999999999987742 2457789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 156 LTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 156 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
..+-..|.+.|++++|...|++..+..|.+..+|..+ ..++|.+.+++..+.
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888777777766 678999988887654
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.74 E-value=5.2e-05 Score=70.49 Aligned_cols=114 Identities=7% Similarity=-0.056 Sum_probs=83.0
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ .+.|++..+.+- .+..+|..+...|.+.|+.++|.+.|++..+.. +.+..
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~ 345 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLNP----EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------------PENVY 345 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCSH
T ss_pred HHHHHhcCHHHHHHHHHHHhccCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------------CCCHH
Confidence 456666776 556655543221 123567777777777788888887777776632 23457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
.|..+-..|.+.|++++|...+++..+..|.+...|..+ ..++|...+++..+..
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 788899999999999999999999998888777777766 6788888888877654
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.72 E-value=2.2e-05 Score=72.42 Aligned_cols=161 Identities=7% Similarity=-0.147 Sum_probs=105.5
Q ss_pred hcccHHHHHHHHHHhHh-----c--cc---------------------CCCccccHHHHHhcCCCccCCceehhhhhccc
Q 044945 23 CNEFMDKANGITDRFEE-----R--AV---------------------SIGHYADLDGISDQLPSSSGGRQVDIHFDGGV 74 (296)
Q Consensus 23 ~~~~~~~A~~~f~~M~~-----~--~~---------------------~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 74 (296)
.|+ +++|.+.|+++.+ . .. ..|.+..|...+...-..... ...+..
T Consensus 202 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~ 275 (514)
T 2gw1_A 202 PES-YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-----VNSYIY 275 (514)
T ss_dssp TTH-HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-----HHHHHH
T ss_pred hcc-HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-----HHHHHH
Confidence 455 9999999999887 2 00 044445555544433222111 111122
Q ss_pred ccccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC
Q 044945 75 DGLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST 151 (296)
Q Consensus 75 ~i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~ 151 (296)
+...|.+.|+. .+.|++..+.+- .+...|..+...|.+.|+.++|.+.|++..+.. +.+
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~ 337 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDS----NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------------PEN 337 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCT----TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------------SSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCc----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------hhh
Confidence 23556666666 555555544321 123567777777888888888888887776642 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 152 ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 152 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
..+|..+...|.+.|++++|...+++..+..|.+...|..+ ..++|...+++..+.
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 67888889999999999999999999988877777776666 678888888887653
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.65 E-value=0.00035 Score=57.49 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=59.2
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|+. .+.|++..+.+- .+...|..+...|.+.|+.++|.+.|++..+.. +.+..
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~ 126 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDS----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------------MENGD 126 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------------CCSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC----cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------CCCHH
Confidence 344555555 444444433211 122556666666666666666666666665532 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.|..+...|.+.|++++|...+++..+..|.+...|..+ ..++|.+.+++..+
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555566666666666666666555554444444433 34555555555544
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.65 E-value=0.00015 Score=63.03 Aligned_cols=89 Identities=8% Similarity=0.022 Sum_probs=61.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|.+.|++..+.. +.+..+|..+-..|.+.|++++|...|++..+..|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK--------------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 445555556666666666666666554431 346678888888889999999999999988887776
Q ss_pred CcchhHHh--------------------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------------------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------------------~~~~a~~l~~~M~~~ 207 (296)
+...+..+ ..++|...+++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 65544311 578888888877664
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.64 E-value=0.00069 Score=58.23 Aligned_cols=165 Identities=12% Similarity=-0.081 Sum_probs=97.5
Q ss_pred HHhhcccHHHHHHHHHHhHhcccC--------------CC-ccccHHHHHhcCCCccCCceehhhhhcccccccccccCC
Q 044945 20 LAGCNEFMDKANGITDRFEERAVS--------------IG-HYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGS 84 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~--------------~g-~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~ 84 (296)
+...|+ .++|..+|+++.+.... .| ....|...+...-...... ...+..+...|.+.|+
T Consensus 66 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 66 LVELNK-ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHTC-HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTC
T ss_pred HHHhhh-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccC
Confidence 344476 89999999988775532 44 4555555554433222110 0112233467777888
Q ss_pred H---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHH
Q 044945 85 V---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSA 161 (296)
Q Consensus 85 ~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~ 161 (296)
. .+.|++..+.+- .+..+|..+-..|.+.|+.++|.+.|++..+.. | .+..+|..+-..
T Consensus 141 ~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~------------~~~~~~~~l~~~ 202 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMK----GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--P------------EDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHHHHHHHHHHTT----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--C------------CChHHHHHHHHH
Confidence 8 666666554321 123667778888888999999999988877643 2 244556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---------CCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 162 CRVHRNVELAEKVADMILMIE---------PNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 162 ~~~~g~~~~A~~~~~~m~~~~---------~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|.+.|++++|...+++..+.. +.+..+|..+ ..++|...+++..+.
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 666666666666666665432 2223344444 456666666665543
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.62 E-value=9.1e-05 Score=61.72 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=40.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+...|.+.|++++|.+.|++..+.. | .+...|..+-..|.+.|++++|...+++..+..|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--P------------SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 668888888899999999999999887753 2 22334444444444444444444444444444333
Q ss_pred C
Q 044945 185 N 185 (296)
Q Consensus 185 ~ 185 (296)
+
T Consensus 104 ~ 104 (252)
T 2ho1_A 104 N 104 (252)
T ss_dssp C
T ss_pred c
Confidence 3
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.59 E-value=7.7e-05 Score=61.53 Aligned_cols=176 Identities=12% Similarity=0.056 Sum_probs=108.8
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE 152 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~ 152 (296)
-..|.+.|++ ...|++..+.+- .+...|..+...|.+.|+.++|.+.|++..+.. +.+.
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~ 91 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEENK----EDAIPYINFANLLSSVNELERALAFYDKALELD--------------SSAA 91 (243)
T ss_dssp ------------CCTTHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------Ccch
Confidence 3566777777 556666554321 234788889999999999999999999987753 2367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecch--
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEE-- 222 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~-- 222 (296)
.+|..+...|.+.|++++|...+++..+..|.+...|..+ ..++|.+.+++..+. .|+.......++.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 8888999999999999999999999998887777666666 689999999888764 3432222211111
Q ss_pred ---hhhhhhhhhhhHHHHHHHHhhcCCCC-CeEEEEecccCccchhhHHHHHhhhhcc
Q 044945 223 ---EQKKNILYYHGERLALVFGIISTPDG-TTIRVIKNLPSLRGLRHGNKVVSKIVHR 276 (296)
Q Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~~~~k~g~~~~A~~~f~~m~~r 276 (296)
+........... .... .+... ....+...|.+.|+.++|.+.|++..+.
T Consensus 170 ~~~~~~~~A~~~~~~----~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 170 ANEGMLDEALSQFAA----VTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHTCCHHHHHHHHH----HHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH----HHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 111111111111 1111 11100 0011244578899999999999988753
No 33
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.57 E-value=0.0008 Score=49.22 Aligned_cols=121 Identities=12% Similarity=0.207 Sum_probs=92.3
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.|..+...|.+.|+.++|.++|+++.+.+ +.+...|..+...|...|++++|...|+++.+..|.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 57888899999999999999999997753 2356778888999999999999999999999887777
Q ss_pred cchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhhhhHHHHHHHHhhcCCCCCeEEEEecc
Q 044945 186 TGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLALVFGIISTPDGTTIRVIKNL 257 (296)
Q Consensus 186 ~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 257 (296)
...|..+ ..++|.+.++++.+.. |+... .. ..+ ...|
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~---------------~~-------~~l-----------a~~~ 113 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAE---------------AW-------YNL-----------GNAY 113 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHH---------------HH-------HHH-----------HHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChH---------------HH-------HHH-----------HHHH
Confidence 6666655 6789999998887642 32110 00 001 2345
Q ss_pred cCccchhhHHHHHhhhhc
Q 044945 258 PSLRGLRHGNKVVSKIVH 275 (296)
Q Consensus 258 ~k~g~~~~A~~~f~~m~~ 275 (296)
.+.|+.+.|.+.|.++..
T Consensus 114 ~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 114 YKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHc
Confidence 678999999999988764
No 34
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.54 E-value=0.0012 Score=47.75 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=75.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+...|.+.|+.++|.+.|.+..+.. +.+..+|..+...|.+.|++++|...|+++.+..|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 678889999999999999999999997753 235678889999999999999999999999988777
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+..+|..+ ..++|...+++..+.
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77666665 678888888887764
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.52 E-value=0.00011 Score=60.80 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=87.8
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|+. ...|++..+.+- .+...|..+-..|.+.|+.++|++.|++..+.. | .+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P------------~~~~ 74 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENP----QDPEALYWLARTQLKLGLVNPALENGKTLVART--P------------RYLG 74 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CcHH
Confidence 356677777 666666554321 233678888888899999999999998887643 2 3567
Q ss_pred HHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 154 VWLTLLSACRVH-----------RNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 154 ~~~~Li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
.|..+-..|.+. |++++|...|++..+..|.+...|..+ ..++|...|++..+..
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 788888888888 999999999999999888888777766 6799999999888766
No 36
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.51 E-value=0.0017 Score=50.50 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=61.8
Q ss_pred cccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENV 154 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~ 154 (296)
.|.+.|+. .+.|++..+.+- .+...|..+...|.+.|+.++|.+.|++..+.. +.+...
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~ 78 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADA----FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------------PDNVKV 78 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCc----cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CCCHHH
Confidence 44555555 555555443321 123556666666667777777777776665532 123445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 155 WLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|..+...|...|++++|...+++..+..|.+...|..+ ..++|.+.+++..+.
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 55555666666666666666666655555444444433 455666666555443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00099 Score=55.02 Aligned_cols=155 Identities=8% Similarity=-0.018 Sum_probs=107.5
Q ss_pred hhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccC--C
Q 044945 22 GCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVR--D 96 (296)
Q Consensus 22 ~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~--~ 96 (296)
..|+ +++|.+.|++..+.. . .+. .+..+...|.+.|+. .+.|++..+. +
T Consensus 17 ~~~~-~~~A~~~~~~a~~~~-~---~~~---------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 17 KARQ-FDEAIEHYNKAWELH-K---DIT---------------------YLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HTTC-HHHHHHHHHHHHHHS-C---CTH---------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Hhcc-HHHHHHHHHHHHHhh-c---cHH---------------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 3465 999999999988754 2 000 111223566777777 5566654432 1
Q ss_pred cccCCCc----eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhh-------------hcc-CCCHHHHHHH
Q 044945 97 FLEYCDY----AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRI-------------MHA-GSTENVWLTL 158 (296)
Q Consensus 97 ~~~~~p~----~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l-------------i~~-~p~~~~~~~L 158 (296)
. .|+ ..+|..+-..|.+.|+.++|.+.|++..+.. |+..++..+ +.. +.+...|..+
T Consensus 71 ~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (258)
T 3uq3_A 71 M---RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE 145 (258)
T ss_dssp T---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred c---ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 1 111 3788899999999999999999999988743 443332222 111 2345678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 159 LSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
-..|...|++++|...|++..+..|.+...|..+ .+++|...+++..+.
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8899999999999999999988888777777666 678898888888764
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.42 E-value=0.0011 Score=55.60 Aligned_cols=72 Identities=18% Similarity=0.030 Sum_probs=41.6
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..+|..+...|.+.|+.++|.+.|++..+.. | .+..+|..+-..|.+.|++++|...|++..+..|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 108 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR--P------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--C------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc
Confidence 3677888888888888888888888887643 2 1233444444444444444444444444444433
Q ss_pred CCcchh
Q 044945 184 NNTGAY 189 (296)
Q Consensus 184 ~~~~~y 189 (296)
.+..+|
T Consensus 109 ~~~~~~ 114 (275)
T 1xnf_A 109 TYNYAH 114 (275)
T ss_dssp TCTHHH
T ss_pred cccHHH
Confidence 333333
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.39 E-value=0.0012 Score=53.37 Aligned_cols=145 Identities=9% Similarity=-0.057 Sum_probs=106.2
Q ss_pred HhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhccccccccccc-CCH---HHHHhhcccCC
Q 044945 21 AGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRS-GSV---RKVFEIMAVRD 96 (296)
Q Consensus 21 ~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~-g~~---~~~f~~M~~~~ 96 (296)
...|+ .++|.+.|++..+.... . . ..+..+...|.+. |+. .+.|++..+..
T Consensus 53 ~~~~~-~~~A~~~~~~a~~~~~~--~---~-------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (225)
T 2vq2_A 53 QYLKV-NDKAQESFRQALSIKPD--S---A-------------------EINNNYGWFLCGRLNRPAESMAYFDKALADP 107 (225)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTT--C---H-------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHTST
T ss_pred HHcCC-hHHHHHHHHHHHHhCCC--C---h-------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc
Confidence 33476 99999999998774311 0 0 0111224567788 888 77777776622
Q ss_pred cccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044945 97 FLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVA 175 (296)
Q Consensus 97 ~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 175 (296)
. .| +...|..+...|.+.|+.++|.+.|++..+.. +.+...|..+...|.+.|++++|...+
T Consensus 108 ~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 108 T---YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--------------PQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp T---CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred C---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 33 34678899999999999999999999987743 235678889999999999999999999
Q ss_pred HHHHhcCC-CCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 176 DMILMIEP-NNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 176 ~~m~~~~~-~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
++..+..| .+...+..+ ..+++..+++.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99988877 676666555 567887888777643
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.34 E-value=0.0019 Score=55.90 Aligned_cols=82 Identities=9% Similarity=-0.009 Sum_probs=60.6
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
..|.+.|+.++|.+.|++..+.. +.+...|..+-..|.+.|++++|...+++..+..|.+..+|..
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 193 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC--------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC--------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44445555555555555544321 3467789999999999999999999999999888877777776
Q ss_pred h--------hHHHHHHHHHHHHhC
Q 044945 192 L--------INEALKDLLERMEQE 207 (296)
Q Consensus 192 l--------~~~~a~~l~~~M~~~ 207 (296)
+ ..++|...+++..+.
T Consensus 194 la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 194 ISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6 678888888887754
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.28 E-value=0.00085 Score=55.24 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=15.5
Q ss_pred HHhhcccHHHHHHHHHHhHhcc
Q 044945 20 LAGCNEFMDKANGITDRFEERA 41 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~ 41 (296)
+...|+ +++|...|++..+..
T Consensus 15 ~~~~g~-~~~A~~~~~~al~~~ 35 (217)
T 2pl2_A 15 LYALGR-YDAALTLFERALKEN 35 (217)
T ss_dssp HHHTTC-HHHHHHHHHHHHTTS
T ss_pred HHHcCC-HHHHHHHHHHHHHhC
Confidence 444476 999999999887654
No 42
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.24 E-value=0.0019 Score=46.67 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=76.5
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE 152 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~ 152 (296)
...|.+.|++ .+.|++..+.+- .+..+|..+...|.+.|+.++|...|+++.+.. +.+.
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~ 77 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PNNA 77 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------CccH
Confidence 3567778888 777777654321 234688999999999999999999999998743 2466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhH
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYV 190 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~ 190 (296)
.+|..+-..|.+.|++++|...|++..+..|.+...+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 115 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78889999999999999999999999888776654443
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.23 E-value=0.003 Score=49.78 Aligned_cols=125 Identities=8% Similarity=0.098 Sum_probs=79.5
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-----
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA----- 148 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~----- 148 (296)
+.|.+.|++ .+.|++..+.+- -+..+|..+-..|.+.|+.++|.+.+.......-.. ...+..+-..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADP----NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHcC
Confidence 456667777 566665543211 122567777888888888888888888776643211 1111111000
Q ss_pred ----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHH
Q 044945 149 ----------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 149 ----------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M 204 (296)
+-+...|..+-..|.+.|++++|...|++..+..|.+..+|..+ ..++|.+.|++-
T Consensus 88 ~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 88 EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33566777777788888888888888888877777777666666 567777777766
Q ss_pred Hh
Q 044945 205 EQ 206 (296)
Q Consensus 205 ~~ 206 (296)
.+
T Consensus 168 l~ 169 (184)
T 3vtx_A 168 LE 169 (184)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.19 E-value=0.0048 Score=51.52 Aligned_cols=146 Identities=9% Similarity=-0.044 Sum_probs=102.5
Q ss_pred HHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCC
Q 044945 20 LAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRD 96 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~ 96 (296)
+...|+ +++|.+.|++..+.... .. . .+..+...|.+.|+. .+.|++..+..
T Consensus 13 ~~~~~~-~~~A~~~~~~~l~~~p~--~~-~---------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 13 LFKNNN-YAEAIEVFNKLEAKKYN--SP-Y---------------------IYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp HHTTTC-HHHHHHHHHHHHHTTCC--CS-T---------------------THHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHhcC-HHHHHHHHHHHHHhCCC--cH-H---------------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 344466 99999999998875321 00 0 011123467777888 66666655522
Q ss_pred cccCCCcee--eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044945 97 FLEYCDYAI--SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKV 174 (296)
Q Consensus 97 ~~~~~p~~~--t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~ 174 (296)
- .|+.. +|..+-..|.+.|+.++|.+.|++..+.. +.+..+|..+-..|.+.|++++|...
T Consensus 68 ~---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 68 N---ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------------TTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp C---TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C---chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------------cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 2 23322 38888899999999999999999987742 23556788888899999999999999
Q ss_pred HHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 175 ADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 175 ~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|++..+..|.+...|..+ .+++|.+.|++..+.
T Consensus 131 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 131 MEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887777666655554 578888888887764
No 45
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.18 E-value=0.002 Score=50.09 Aligned_cols=143 Identities=13% Similarity=0.042 Sum_probs=102.7
Q ss_pred hhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCCcc
Q 044945 22 GCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDFL 98 (296)
Q Consensus 22 ~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~~ 98 (296)
..|+ +++|.+.|++..+.... . . ..+..+...|.+.|+. .+.|++..+.+-
T Consensus 20 ~~~~-~~~A~~~~~~~~~~~~~--~---~-------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~- 73 (186)
T 3as5_A 20 KAGR-YSQAVMLLEQVYDADAF--D---V-------------------DVALHLGIAYVKTGAVDRGTELLERSLADAP- 73 (186)
T ss_dssp HHTC-HHHHHHHHTTTCCTTSC--C---H-------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HhcC-HHHHHHHHHHHHHhCcc--C---h-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 3366 99999999988764211 0 0 0111223566677887 666666554321
Q ss_pred cCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 99 EYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 99 ~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
.+...|..+...|.+.|+.++|.+.|++..+.. +.+...|..+-..|.+.|++++|...+++.
T Consensus 74 ---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 74 ---DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------------PINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp ---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 233678888899999999999999999987752 245677888888999999999999999999
Q ss_pred HhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 179 LMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 179 ~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.+..|.+...|..+ ..++|.+.+++..+.
T Consensus 137 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88877676666665 678888888877654
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.14 E-value=0.0019 Score=54.05 Aligned_cols=145 Identities=14% Similarity=0.010 Sum_probs=103.6
Q ss_pred cccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcccCCcccC
Q 044945 24 NEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAVRDFLEY 100 (296)
Q Consensus 24 ~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~~~~~~~ 100 (296)
++ +++|.+.|+++.+.... .-+... ..+..+...|.+.|++ ...|++..+.+-
T Consensus 19 ~~-~~~A~~~~~~~~~~~~~--~~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--- 74 (275)
T 1xnf_A 19 LQ-QEVILARMEQILASRAL--TDDERA------------------QLLYERGVLYDSLGLRALARNDFSQALAIRP--- 74 (275)
T ss_dssp HH-HHHHHHHHHHHHTSSCC--CHHHHH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---
T ss_pred ch-HHHHHHHHHHHHhcccc--cCchhH------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---
Confidence 54 99999999998875211 001100 1112224567788888 777777655321
Q ss_pred CCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 101 CDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 101 ~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.+..+|..+-..|.+.|+.++|.+.|++..+.. +.+..+|..+-..|.+.|++++|...|++..+
T Consensus 75 -~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 75 -DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 234789999999999999999999999988742 23567889999999999999999999999998
Q ss_pred cCCCCcchhHHh-------hHHHHHHHHHHHHhC
Q 044945 181 IEPNNTGAYVIL-------INEALKDLLERMEQE 207 (296)
Q Consensus 181 ~~~~~~~~y~~l-------~~~~a~~l~~~M~~~ 207 (296)
..|.+...+..+ ..++|...+.+....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 140 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 877665333222 568888888766654
No 47
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.06 E-value=0.0057 Score=47.63 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=77.4
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|.+.|++..+.. +-+...|..+=..|.+.|++++|...|++..+..|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 467778889999999999999999987743 246788999999999999999999999999999998
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
+...|..+ ..++|...|++-.+..
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88777777 7899999998877653
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00052 Score=56.78 Aligned_cols=90 Identities=6% Similarity=-0.016 Sum_probs=65.0
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC--
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-- 151 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-- 151 (296)
..|.+.|++ ...|++..+.+ ++...|..+-..|.+.|+.++|.+.|++..+.. |+. .|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~---------~~~~~ 76 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH-----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM---------RADYK 76 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT---------TCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc---------ccchH
Confidence 456667777 67777766544 345677888888888888888888888876532 110 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 152 --ENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 152 --~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
..+|..+-..|.+.|++++|...|++..+..
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 109 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 5788888999999999999999999988753
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.93 E-value=0.0011 Score=55.50 Aligned_cols=123 Identities=8% Similarity=-0.024 Sum_probs=93.2
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ ...|++..+.+- .+...|..+...|.+.|+.++|++.|++..+.+-.| .....
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~ 75 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKY----NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT-----------KAKSA 75 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTC----CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT-----------TCCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch-----------hHHHH
Confidence 456677888 777777655421 122489999999999999999999999998743211 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
.|..+-..|.+.|++++|...|++..+..|.+...|..+ .+++|...+++..+. .|+....
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~ 144 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKV 144 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHH
Confidence 688888999999999999999999999888887777777 678998888776654 5654433
No 50
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.88 E-value=0.01 Score=45.63 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=74.4
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..+.+.|+.++|...|++..... +.+...|..+=..|.+.|++++|...|++..+..|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 567778889999999999999999887643 246778888888999999999999999999998888
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...|..+ ..++|...|++..+.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87777666 678898888876653
No 51
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.87 E-value=0.0095 Score=43.53 Aligned_cols=91 Identities=13% Similarity=0.187 Sum_probs=69.3
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+...|..+-..|.+.|+.++|.+.|++..+.. | .+...|..+-..|...|++++|...+++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--P------------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--T------------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 44568888888889999999999998876642 2 356777888888888899999999998888877
Q ss_pred CCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 183 PNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 183 ~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|.+...|..+ ..++|.+.+++..+.
T Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7666555555 567888877776653
No 52
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.81 E-value=0.014 Score=43.53 Aligned_cols=92 Identities=8% Similarity=0.071 Sum_probs=74.9
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.|.-.=..|.+.|++++|++.|++-.+.. +.+...|.-+-..|.+.|++++|...|++..+..|.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 45556678899999999999999987643 2467888888899999999999999999999988888
Q ss_pred cchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 186 TGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 186 ~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
...|..+ .+++|.+.|++-.+. .|+.
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCC
Confidence 8777777 678888888877653 4553
No 53
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.015 Score=41.29 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=68.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+...+.+.|++++|.+.|++..... +.+...|..+-..|.+.|++++|...+++..+..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 467778888889999999999999887642 235667788888888899999999999988887776
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...|..+ ..++|.+.+++..+.
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 66555555 567888888776653
No 54
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.79 E-value=0.014 Score=44.09 Aligned_cols=89 Identities=12% Similarity=0.002 Sum_probs=73.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..+..+-..+.+.|++++|.+.|++..... +.+...|..+=..|.+.|++++|...|++..+..|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 456667788899999999999999987643 246778888888999999999999999999998888
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...|..+ ..++|.+.|++..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87776666 678888888877654
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.78 E-value=0.0025 Score=50.30 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=93.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|.-+=..|.+.|++++|++.|++-.+.. | -+..+|..+-..|.+.|++++|...++...+..+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--P------------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence 568888899999999999999999987642 3 35677888888888999999999998888877776
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecch-----hhhhhhhhhhhHHHHHHHHhhcCCCCCe-
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEE-----EQKKNILYYHGERLALVFGIISTPDGTT- 250 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (296)
+...+..+ ..+.|...+.+.... .|+.......++. +...+.+..... .... .+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~----~l~~-~p~~~~~~ 144 (184)
T 3vtx_A 72 SAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEK----TISI-KPGFIRAY 144 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHH-CTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHH----HHHh-cchhhhHH
Confidence 66555555 566777766665543 3443222221111 111111111111 1111 1111000
Q ss_pred EEEEecccCccchhhHHHHHhhhhcc
Q 044945 251 IRVIKNLPSLRGLRHGNKVVSKIVHR 276 (296)
Q Consensus 251 ~~ii~~~~k~g~~~~A~~~f~~m~~r 276 (296)
..+-..|.+.|+.++|.+.|++..+.
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 00123478899999999999887643
No 56
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.72 E-value=0.02 Score=42.28 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=74.4
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+...|..+-..|.+.|++++|...|.+..+.. +.+...|..+-..|...|++++|...+++..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34678888899999999999999999987743 2356788888899999999999999999999888
Q ss_pred CCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 183 PNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 183 ~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|.+...|..+ ..++|...|.+..+.
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8777777666 678888888776653
No 57
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.72 E-value=0.0031 Score=58.32 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=88.1
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|...|+. ...|++..+. .|+..+|..+-..|.+.|+.++|.+.|++..+.. +.+..
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~ 311 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL-----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--------------PEYPP 311 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--------------TTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--------------CCCHH
Confidence 345556666 5566655543 3444677777788888888888888888876643 23677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
+|..+-..|...|++++|...|++..+..|.+...|..+ .+++|...+++..+. .|+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~ 377 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTL 377 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 899999999999999999999999999888777777777 689999999988775 3553
No 58
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.69 E-value=0.022 Score=44.02 Aligned_cols=117 Identities=11% Similarity=-0.008 Sum_probs=73.3
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ .+.|++..+.+- -+...|..+-..|.+.|+.++|++.|++..+.. | -+..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~ 80 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAP----ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--P------------KYSK 80 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C------------CCHH
Confidence 445566666 555554433211 123567777777777777777777777766542 2 2456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHhhHHHHHHHHHHHHhCCCcC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVILINEALKDLLERMEQEGYVP 211 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l~~~~a~~l~~~M~~~g~~p 211 (296)
.|..+-..|.+.|++++|...|++..+..|.+...|.......+..-+.+.......|
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 138 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPP 138 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 6777777777788888888888877777666666665555555555556665554433
No 59
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.028 Score=41.12 Aligned_cols=89 Identities=10% Similarity=0.030 Sum_probs=73.1
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|.+.|.+-.+.. +.+...|..+-..|.+.|++++|...|++..+..|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 356667788999999999999999987743 246788999999999999999999999999998888
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...|..+ ..++|...|++..+.
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 87777666 678888888776553
No 60
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.66 E-value=0.028 Score=40.55 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=74.3
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+...|..+-..+...|+.++|.+.|++..+.. +.+...|..+-..|...|++++|...+++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 34678888899999999999999999987642 2356778888899999999999999999998887
Q ss_pred CCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 183 PNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 183 ~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|.+...|..+ ..++|.+.+++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 7776666555 678888888877654
No 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.64 E-value=0.032 Score=44.64 Aligned_cols=110 Identities=10% Similarity=-0.054 Sum_probs=82.7
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ .+.|++.. .|+...|..+-..|.+.|+.++|.+.|++..+.. +.+..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~ 72 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------KHLAV 72 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------ccchH
Confidence 345667777 56666553 3444789999999999999999999999887643 23567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----------------chhHHh--------hHHHHHHHHHHHHhC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNT----------------GAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.|..+-..|.+.|++++|...|++..+..|.+. ..|..+ ..++|...|++..+.
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 788888899999999999999999988766544 334333 678888888877664
No 62
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.62 E-value=0.027 Score=43.53 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=79.1
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
...|..+-..|.+.|++++|++.|++-.+.. | -+...|..+-..|.+.|++++|...|++..+..|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--P------------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4568888899999999999999999987743 2 3677889999999999999999999999999988
Q ss_pred CCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCc
Q 044945 184 NNTGAYVIL--------INEALKDLLERMEQEGYVPDTK 214 (296)
Q Consensus 184 ~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~ 214 (296)
.+...|..+ .+++|...|++..+. .|+..
T Consensus 77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 113 (164)
T 3sz7_A 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEA--EGNGG 113 (164)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HSSSC
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCch
Confidence 888777777 678999988887664 45543
No 63
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.60 E-value=0.012 Score=43.83 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=76.8
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
+.|.+.|++ .+.|++..+.+- .+...|.-+-.+|.+.|+.++|++.|++-.+.. +.+..
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~ 82 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDP----ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--------------SKFIK 82 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--------------hhhhH
Confidence 567888888 667766544321 234789999999999999999999999987642 24677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhH
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYV 190 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~ 190 (296)
.|..+=..|...|++++|...|++..+..|.|...+.
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8989999999999999999999999999887775544
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.57 E-value=0.039 Score=54.11 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=99.6
Q ss_pred eeehHH---HHHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---H
Q 044945 13 NVELSN---GLAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---R 86 (296)
Q Consensus 13 ~vs~n~---~~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~ 86 (296)
+-+|+. ++.+.|+ +++|++.|++-.+..-. . .. .+..+-..|.+.|+. .
T Consensus 9 a~al~nLG~~~~~~G~-~~eAi~~~~kAl~l~P~--~-~~---------------------a~~nLg~~l~~~g~~~eA~ 63 (723)
T 4gyw_A 9 ADSLNNLANIKREQGN-IEEAVRLYRKALEVFPE--F-AA---------------------AHSNLASVLQQQGKLQEAL 63 (723)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSC--C-HH---------------------HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC--C-HH---------------------HHHHHHHHHHHcCCHHHHH
Confidence 445664 3555587 99999999998764311 1 00 111223567778888 6
Q ss_pred HHHhhcccCCcccCCCc-eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc
Q 044945 87 KVFEIMAVRDFLEYCDY-AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH 165 (296)
Q Consensus 87 ~~f~~M~~~~~~~~~p~-~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~ 165 (296)
+.|++-.+. .|+ ...|+.+-..|.+.|+.++|++.|++-.+.. | -+...|+.|=..|.+.
T Consensus 64 ~~~~~Al~l-----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P------------~~~~a~~~Lg~~~~~~ 124 (723)
T 4gyw_A 64 MHYKEAIRI-----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--P------------AFADAHSNLASIHKDS 124 (723)
T ss_dssp HHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHHc
Confidence 666655432 232 3689999999999999999999999877632 2 3567899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 166 RNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
|++++|...|++..+..|.+...|..+
T Consensus 125 g~~~eAi~~~~~Al~l~P~~~~a~~~L 151 (723)
T 4gyw_A 125 GNIPEAIASYRTALKLKPDFPDAYCNL 151 (723)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence 999999999999999988888777766
No 65
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.54 E-value=0.039 Score=40.63 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=73.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..+-.+-..+.+.|+.++|...|++..+.. +.+...|..+=..|.+.|++++|...|++..+..|.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456667788899999999999999987742 236778888888999999999999999999999888
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHh
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+...|..+ ..++|...+++..+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87777666 67888888887664
No 66
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.033 Score=41.42 Aligned_cols=93 Identities=12% Similarity=-0.042 Sum_probs=67.7
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
...|..+-..|.+.|++++|.+.|++..+.. |+.. -....|..+-..|.+.|++++|...+++..+..|
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQ---------DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccch---------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 3567888888889999999999998877642 2110 0156777777888889999999999998888777
Q ss_pred CCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 184 NNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 184 ~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.+...|..+ ..++|.+.+++..+.
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666555544 567777777766653
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.48 E-value=0.026 Score=48.72 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=79.6
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCcee--eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCC
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYAI--SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGS 150 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~--t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p 150 (296)
...+.+.|++ .++|++..+. .|+.. .|..+...+.+.|++++|.++|++..+.. | +
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p------------~ 166 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--R------------T 166 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--T------------C
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C------------C
Confidence 3455667777 7888877652 44333 79999999999999999999999987643 2 2
Q ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCC-CcCC
Q 044945 151 TENVWLTLLSAC-RVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEG-YVPD 212 (296)
Q Consensus 151 ~~~~~~~Li~~~-~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g-~~p~ 212 (296)
+...|....... ...|+.++|..+|++..+..|.+...|..+ ..++|..+|++..... +.|+
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 223333332222 225888888888888877766666666554 5677888888777763 3453
No 68
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.47 E-value=0.035 Score=42.15 Aligned_cols=71 Identities=7% Similarity=-0.002 Sum_probs=45.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|.+.|.+..+.. +.+...|..+-..|.+.|++++|...|++..+..|.
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELD--------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 556666666777777777777776665532 124455666666777777777777777777666555
Q ss_pred Ccchh
Q 044945 185 NTGAY 189 (296)
Q Consensus 185 ~~~~y 189 (296)
+...+
T Consensus 114 ~~~~~ 118 (166)
T 1a17_A 114 DKDAK 118 (166)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 54444
No 69
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.43 E-value=0.0067 Score=50.46 Aligned_cols=122 Identities=15% Similarity=0.102 Sum_probs=84.2
Q ss_pred ccccccccccCCH---HHHHhhcccC------CcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCC---ccCh
Q 044945 73 GVDGLRPSRSGSV---RKVFEIMAVR------DFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKI---KARH 139 (296)
Q Consensus 73 ~~~i~~y~k~g~~---~~~f~~M~~~------~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~---~pd~ 139 (296)
..+-..|...|++ ...|++..+. +- .| ...+|+.+-..|...|+.++|.+.|.+..+..- .|+.
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3345778888888 7777776542 21 23 345788888999999999999999988765310 0000
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCcchhHHh--------hHHHHHHHHHH
Q 044945 140 APFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI--------EPNNTGAYVIL--------INEALKDLLER 203 (296)
Q Consensus 140 ~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~y~~l--------~~~~a~~l~~~ 203 (296)
+....+|..+-..|...|++++|...|++..+. .+....+|..+ ..++|...+++
T Consensus 124 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 124 ---------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123567888889999999999999999998765 12223344444 57888888877
Q ss_pred HHh
Q 044945 204 MEQ 206 (296)
Q Consensus 204 M~~ 206 (296)
..+
T Consensus 195 ~l~ 197 (283)
T 3edt_B 195 ILT 197 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 70
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.43 E-value=0.028 Score=39.36 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=67.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|...|++..+.. +.+...|..+-..|.+.|++++|...|++..+..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 567788888999999999999999987743 235667788888889999999999999998887776
Q ss_pred --CcchhHHh------h---HHHHHHHHHHHHhC
Q 044945 185 --NTGAYVIL------I---NEALKDLLERMEQE 207 (296)
Q Consensus 185 --~~~~y~~l------~---~~~a~~l~~~M~~~ 207 (296)
+...|..+ . .++|.+.+.+....
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 66555544 1 35666666655543
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.35 E-value=0.015 Score=42.17 Aligned_cols=89 Identities=9% Similarity=0.122 Sum_probs=70.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|++++|...|.+..+.. +.+...|..+-..|...|++++|...+++..+..|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 457788889999999999999999987753 235677888888999999999999999998876543
Q ss_pred C-------cchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 N-------TGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~-------~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+ ..+|..+ ..++|.+.+++..+.
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3 3344433 678888888888764
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.014 Score=49.45 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=97.0
Q ss_pred cccHHHHHHHHHHhHhcccCCC--ccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhccc----
Q 044945 24 NEFMDKANGITDRFEERAVSIG--HYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMAV---- 94 (296)
Q Consensus 24 ~~~~~~A~~~f~~M~~~~~~~g--~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~~---- 94 (296)
|+ +++|..+|++..+..-..+ ..+.. ...+..+-..|...|+. ...|++..+
T Consensus 41 g~-~~~A~~~~~~a~~~~~~~~~~~~~~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 41 GR-YEVAVPLCKQALEDLEKTSGHDHPDV------------------ATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TC-HHHHHHHHHHHHHHHHHHHCSSSHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHHHHcCCCCHHH------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 66 9999999999876311000 00000 01122233566777777 555554432
Q ss_pred ---CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc--CCCHHHHHHHHHHHHhcCCHH
Q 044945 95 ---RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA--GSTENVWLTLLSACRVHRNVE 169 (296)
Q Consensus 95 ---~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~--~p~~~~~~~Li~~~~~~g~~~ 169 (296)
.+. .....+|+.+-..|...|+.++|.+.|++..+..- ..... .....+|..+-..|.+.|+++
T Consensus 102 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 102 TLGKDH---PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE--------KVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--------HHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HhCCCC---hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH--------HhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 222 22346789999999999999999999999876310 00000 124567888889999999999
Q ss_pred HHHHHHHHHHhc--------CCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 170 LAEKVADMILMI--------EPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 170 ~A~~~~~~m~~~--------~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+|...+++..+. .+....+|..+ ..++|.+.+++..+
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 11123334444 67888888877765
No 73
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.34 E-value=0.017 Score=50.67 Aligned_cols=112 Identities=11% Similarity=0.034 Sum_probs=73.9
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCC-----ceeeHHHHHHH--Hhc--cCChhHHHHHHHHHHHcCCccChhhhh
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCD-----YAISRNSITAG--CGQ--NGPFDEGLKFFGQMLMAKIKARHAPFS 143 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p-----~~~t~n~li~~--~~~--~g~~~~A~~l~~~M~~~g~~pd~~ty~ 143 (296)
+..|.+.|+. .+.+++|.+. .| +..+..-|..+ ... .++..+|+.+|+++.+.
T Consensus 143 vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---------- 207 (310)
T 3mv2_B 143 IEVALLNNNVSTASTIFDNYTNA-----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---------- 207 (310)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----------
Confidence 5678888888 8888888653 34 12444445545 222 33888999999998654
Q ss_pred hhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCcchh-HHh-----hHHHHHHHHHHHHhC
Q 044945 144 RIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI----------EPNNTGAY-VIL-----INEALKDLLERMEQE 207 (296)
Q Consensus 144 ~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~~y-~~l-----~~~~a~~l~~~M~~~ 207 (296)
.|+..+-..|++++.+.|++++|++.++.+.+. .|.|..+. |.+ .-++|.+++.++++.
T Consensus 208 -----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~ 282 (310)
T 3mv2_B 208 -----FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL 282 (310)
T ss_dssp -----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT
T ss_pred -----CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 355444455666889999999999999987654 25555554 332 224666777777654
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.34 E-value=0.029 Score=45.63 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=83.9
Q ss_pred cccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHH
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENV 154 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~ 154 (296)
.|.+.|+. .+.|++..+.+- .++...|.-+-..|.+.|+.++|++.|++-.+.. | -+...
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~~ 78 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTN---NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--Y------------NLANA 78 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C------------SHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--c------------chHHH
Confidence 45566777 566665544332 2344666667788888888888888888876532 2 35567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------chhHHh--------hHHHHHHHHHHHHhCCCcCC
Q 044945 155 WLTLLSACRVHRNVELAEKVADMILMIEPNNT-------GAYVIL--------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~y~~l--------~~~~a~~l~~~M~~~g~~p~ 212 (296)
|..+-..|.+.|++++|...|++..+..|.+. ..|..+ ..++|...|++..+. .|+
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 88889999999999999999999998888776 334444 678999999877654 555
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.28 E-value=0.011 Score=54.68 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=77.0
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhcc---------CChhHHHHHHHHHHHcCCccChhhhh
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQN---------GPFDEGLKFFGQMLMAKIKARHAPFS 143 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~---------g~~~~A~~l~~~M~~~g~~pd~~ty~ 143 (296)
-..|.+.|++ .+.|++..+. .|+...|..+-..|.+. |+.++|++.|++..+.. |
T Consensus 144 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p------ 210 (474)
T 4abn_A 144 GEVYWKKGDVTSAHTCFSGALTH-----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--V------ 210 (474)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--T------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--C------
Confidence 3577788888 6677766554 45557888888889998 99999999999987743 2
Q ss_pred hhhccCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCC---CCcchhHHh--------hHHHHHHHHHHH
Q 044945 144 RIMHAGSTENVWLTLLSACRVH--------RNVELAEKVADMILMIEP---NNTGAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 144 ~li~~~p~~~~~~~Li~~~~~~--------g~~~~A~~~~~~m~~~~~---~~~~~y~~l--------~~~~a~~l~~~M 204 (296)
-+...|..+-..|... |++++|...|++..+..| .+...|..+ .+++|.+.|++.
T Consensus 211 ------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 211 ------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2455666666666666 667777777777666655 555555555 456666666655
Q ss_pred Hh
Q 044945 205 EQ 206 (296)
Q Consensus 205 ~~ 206 (296)
.+
T Consensus 285 l~ 286 (474)
T 4abn_A 285 AA 286 (474)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 76
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.21 E-value=0.026 Score=41.10 Aligned_cols=97 Identities=14% Similarity=0.013 Sum_probs=74.6
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE 152 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~ 152 (296)
-..|.+.|++ .+.|++..+.+- .+...|..+-..|.+.|+.++|++.|++..+.. | .+.
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~------------~~~ 84 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKRNP----KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--P------------TFI 84 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTTCT----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--T------------TCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C------------Cch
Confidence 3566777887 666766554321 234778999999999999999999999987742 2 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhH
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYV 190 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~ 190 (296)
..|..+-..|.+.|++++|...|++..+..|.+...+.
T Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 122 (133)
T 2lni_A 85 KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence 78888889999999999999999999887665554443
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.18 E-value=0.0082 Score=58.92 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=97.7
Q ss_pred CCc-eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 101 CDY-AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 101 ~p~-~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
.|+ ..+|+-|=..|.+.|+.++|++.|++-.+. .| -+...|+.|=..|.+.|++++|...|++..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P------------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FP------------EFAAAHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CS------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 453 357999999999999999999999998764 23 246778888888889999999999999888
Q ss_pred hcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecch-----hhhhhhhhhhhHHHHHHHHhhcCC
Q 044945 180 MIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEE-----EQKKNILYYHGERLALVFGIISTP 246 (296)
Q Consensus 180 ~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 246 (296)
+..|.+..+|..+ ..++|.+.|++-.+. .|+.......++. +..++.+...... ..+ .+.
T Consensus 71 ~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A----l~l-~P~ 143 (723)
T 4gyw_A 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTA----LKL-KPD 143 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHH-CSC
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHh-CCC
Confidence 8888777777777 678888888776653 4553333222211 1111111111111 111 111
Q ss_pred CCCe-EEEEecccCccchhhHHHHHhhhh
Q 044945 247 DGTT-IRVIKNLPSLRGLRHGNKVVSKIV 274 (296)
Q Consensus 247 ~~~~-~~ii~~~~k~g~~~~A~~~f~~m~ 274 (296)
.... ..+...|.+.|+.++|.+.+++..
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 1000 001344778888888888877665
No 78
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.17 E-value=0.066 Score=40.57 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=74.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|.+.|.+..+.. +.+..+|..+-..|...|++++|...+++..+..|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 457788888999999999999999987742 235778888899999999999999999999988887
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...|..+ ..++|...+++..+.
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77666665 678898888887754
No 79
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.038 Score=38.99 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=72.8
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|...|++ .+.|++....+- .+...|..+-..|.+.|+.++|.+.+++..+.. | .+..
T Consensus 12 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~------------~~~~ 73 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSEAIKLDP----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--P------------DWGK 73 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T------------TCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--c------------ccHH
Confidence 355667777 666666543221 133678888899999999999999999987753 2 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhH
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYV 190 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~ 190 (296)
.|..+-..|.+.|++++|...+++..+..|.+...+.
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 7888899999999999999999999887776654443
No 80
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.10 E-value=0.039 Score=42.97 Aligned_cols=113 Identities=9% Similarity=0.066 Sum_probs=79.6
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..+...|+. ...|++..+.+ ..+...|..+-..|...|+.++|.+.|++..+.. | .+..
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~ 79 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--G------------ENAE 79 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C------------SCHH
T ss_pred hhhhhccCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C------------CCHH
Confidence 345566666 44555443321 1123678889999999999999999999987642 2 3556
Q ss_pred HHHHHHHH-HHhcCCH--HHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 154 VWLTLLSA-CRVHRNV--ELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 154 ~~~~Li~~-~~~~g~~--~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
.|..+-.. |...|++ ++|...|++..+..|.+...|..+ ..++|...+++..+.
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 67777777 7788998 999999999998888777666665 678898888887765
No 81
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.05 E-value=0.043 Score=39.48 Aligned_cols=96 Identities=8% Similarity=-0.009 Sum_probs=73.6
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|...|++ ...|++..+.+- .+...|..+...|.+.|+.++|.+.+.+..+.. | .+..
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~------------~~~~ 81 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNP----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--P------------AYSK 81 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--c------------cCHH
Confidence 456677777 666666543221 233678889999999999999999999987742 2 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhH
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYV 190 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~ 190 (296)
.|..+-..|.+.|++++|...|++..+..|.+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHH
Confidence 7888888999999999999999999888776655444
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.026 Score=47.62 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=67.5
Q ss_pred ccccccccCCH---HHHHhhcccC-------CcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHc---CCccChhh
Q 044945 75 DGLRPSRSGSV---RKVFEIMAVR-------DFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMA---KIKARHAP 141 (296)
Q Consensus 75 ~i~~y~k~g~~---~~~f~~M~~~-------~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~t 141 (296)
+...|.+.|+. .+.|++..+. +. ......|+.+-..|.+.|+.++|.+.|++..+. ...++.
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 191 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH---PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD-- 191 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC--
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 34667778888 5555554431 11 113357888999999999999999999998764 000100
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 142 FSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 142 y~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.....++..+-..|.+.|++++|...+++..+
T Consensus 192 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 192 -------PNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp -------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12346788899999999999999999999875
No 83
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.88 E-value=0.049 Score=38.06 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=71.8
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|+. ...|++..+.+- .+...|..+-..|.+.|+.++|.+.|++..+.. |+ ..+..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~----------~~~~~ 77 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDP----EESKYWLMKGKALYNLERYEEAVDCYNYVINVI--ED----------EYNKD 77 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CC----------TTCHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc----------cchHH
Confidence 456777888 666766554321 123678889999999999999999999988753 21 01577
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC
Q 044945 154 VWLTLLSACRVH-RNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 154 ~~~~Li~~~~~~-g~~~~A~~~~~~m~~~~~~~ 185 (296)
.|..+-..|.+. |+.++|.+.++...+..|.+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 888999999999 99999999999999876654
No 84
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.81 E-value=0.08 Score=35.71 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=59.7
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
...|..+-..|.+.|++++|.+.|++-.+.. | .+...|..+-..|.+.|++++|...|++..+..|
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--C------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567778888999999999999999987642 2 3566788888899999999999999999988877
Q ss_pred CCcchhH
Q 044945 184 NNTGAYV 190 (296)
Q Consensus 184 ~~~~~y~ 190 (296)
.+...+.
T Consensus 75 ~~~~~~~ 81 (91)
T 1na3_A 75 NNAEAKQ 81 (91)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 6665544
No 85
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.78 E-value=0.082 Score=39.12 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=74.6
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCc----eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccC
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDY----AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAG 149 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~----~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 149 (296)
..|.+.|++ .+.|++..+. .|+ ...|..+-..|.+.|++++|.+.|++..+.. +
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~ 96 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------------G 96 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------------S
T ss_pred HHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------------c
Confidence 567788888 6777766543 343 4778889999999999999999999987642 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchh
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAY 189 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y 189 (296)
.+...|..+-..|...|++++|...|++..+..|.+...+
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3567788888899999999999999999988877665433
No 86
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.77 E-value=0.11 Score=37.70 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=67.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN- 185 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~- 185 (296)
+-.+-..+.+.|+.++|.+.|++..+.. |+.. .....+..+-..|.+.|++++|...|+...+..|.+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGV---------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSST---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 3345567889999999999999987743 2110 011466677788999999999999999998887765
Q ss_pred --cchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 186 --TGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 186 --~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
...+..+ ..++|...|++..+.. |+.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~ 109 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY--PGS 109 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCC
Confidence 3334333 6788988888887653 553
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.72 E-value=0.013 Score=48.61 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=68.4
Q ss_pred ccccccccCCH---HHHHhhccc-------CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcC---CccChhh
Q 044945 75 DGLRPSRSGSV---RKVFEIMAV-------RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAK---IKARHAP 141 (296)
Q Consensus 75 ~i~~y~k~g~~---~~~f~~M~~-------~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g---~~pd~~t 141 (296)
+-..|...|++ .+.|++..+ .+. .....+|..+-..|...|+.++|.+.|++..+.- ..++.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 165 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH---PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD-- 165 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC--
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--
Confidence 34677888888 555555432 111 1234678999999999999999999999987640 00110
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 142 FSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 142 y~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.....++..+-..|.+.|++++|...+++..+.
T Consensus 166 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 166 -------PNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp -------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 124567888999999999999999999998754
No 88
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.68 E-value=0.092 Score=39.43 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=73.0
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ ...|+.....+- .+...|..+-..|.+.|+.++|.+.|++..+.. | .+..
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~ 87 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDH----YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--I------------NEPR 87 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCTH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C------------CCcH
Confidence 456778888 777776654321 133678888899999999999999999987743 2 3556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchh
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAY 189 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y 189 (296)
.|..+-..|...|++++|...|+...+..|.+...+
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 777888899999999999999999988766555443
No 89
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.63 E-value=0.077 Score=41.01 Aligned_cols=90 Identities=8% Similarity=0.058 Sum_probs=72.7
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ ...|++..+.+- -+...|..+=..|.+.|+.++|++.|++..+.. | -+..
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P------------~~~~ 105 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYDF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--K------------NDYT 105 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--S------------SCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--C------------CCcH
Confidence 467788888 777877665321 134689999999999999999999999988743 3 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.|.-+=.+|.+.|++++|...|++..+..|.
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7888889999999999999999999887653
No 90
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.58 E-value=0.028 Score=40.84 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=60.7
Q ss_pred ccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh---
Q 044945 116 QNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--- 192 (296)
Q Consensus 116 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--- 192 (296)
..|+.++|++.|++-.+.+.. . +-+...|..|-..|.+.|++++|...|++..+..|.+...|..+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~--~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ--G---------KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC--H---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC--C---------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 468889999999998875421 0 13456788888999999999999999999999888887776666
Q ss_pred -----hHHHHHHHHHHHHhC
Q 044945 193 -----INEALKDLLERMEQE 207 (296)
Q Consensus 193 -----~~~~a~~l~~~M~~~ 207 (296)
..++|...+++..+.
T Consensus 71 ~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 678888888876653
No 91
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.53 E-value=0.1 Score=45.76 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=77.1
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCc----------------eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDY----------------AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKA 137 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~----------------~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~p 137 (296)
..|.+.|++ ...|++-.+. .|+ ...|+.+-..|.+.|+.++|++.|++..+.. |
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p 227 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSW-----LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--S 227 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-----hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 567778888 5555554332 222 2689999999999999999999999987742 2
Q ss_pred ChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 138 RHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 138 d~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.+...|..+-.+|...|++++|...|++..+..|.+...+..+
T Consensus 228 ------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 270 (336)
T 1p5q_A 228 ------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270 (336)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3677888889999999999999999999999888887777666
No 92
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.52 E-value=0.18 Score=34.83 Aligned_cols=79 Identities=9% Similarity=0.136 Sum_probs=61.9
Q ss_pred HHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchh
Q 044945 111 TAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN-VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAY 189 (296)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y 189 (296)
-..+.+.|+.++|.+.|++..+.. | .+.. .|..+=..|.+.|++++|...|++..+..|.+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--P------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--S------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--C------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456778999999999999987742 2 3456 788888899999999999999999999888777776
Q ss_pred HHhhHHHHHHHHHH
Q 044945 190 VILINEALKDLLER 203 (296)
Q Consensus 190 ~~l~~~~a~~l~~~ 203 (296)
.....+++...+++
T Consensus 73 ~~~~~~~a~~~~~~ 86 (99)
T 2kc7_A 73 ARKMVMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666555543
No 93
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.48 E-value=0.11 Score=42.06 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=76.9
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
|...|...-..|.+.|+.++|.+.|++..+..- .++...|..+-..|.+.|++++|...|++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 346677777889999999999999999887542 2566667678889999999999999999999888
Q ss_pred CCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 183 PNNTGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 183 ~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
|.+...|..+ ..++|...+++..+. .|+.
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 109 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGN 109 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCc
Confidence 8777777766 678998888877654 3543
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.43 E-value=0.08 Score=49.81 Aligned_cols=74 Identities=8% Similarity=0.002 Sum_probs=42.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH---RNVELAEKVADMILMI 181 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~---g~~~~A~~~~~~m~~~ 181 (296)
..|..+-..|.+.|+.++|.+.|++..+.. +.+...+..+-..|.+. |+.++|...+++..+.
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLL--------------PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 344444455555555555555555444321 12455666666666666 6777777777766666
Q ss_pred CCCCcchhHHh
Q 044945 182 EPNNTGAYVIL 192 (296)
Q Consensus 182 ~~~~~~~y~~l 192 (296)
.|.+...|..+
T Consensus 158 ~p~~~~~~~~l 168 (568)
T 2vsy_A 158 GVGAVEPFAFL 168 (568)
T ss_dssp TCCCSCHHHHT
T ss_pred CCcccChHHHh
Confidence 66555566555
No 95
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.1 Score=36.66 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=57.6
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+...|..+-..+.+.|+.++|.+.|++-.+.. | .+...|..+-..|.+.|++++|...+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--P------------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34567888889999999999999999987742 2 356778888889999999999999999999877
Q ss_pred CCC
Q 044945 183 PNN 185 (296)
Q Consensus 183 ~~~ 185 (296)
|.+
T Consensus 69 p~~ 71 (111)
T 2l6j_A 69 STA 71 (111)
T ss_dssp SST
T ss_pred CCc
Confidence 755
No 96
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.36 E-value=0.11 Score=39.67 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=71.9
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ ...|+.....+- .+...|..+-..|.+.|+.++|++.|++..+.. | .+..
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p------------~~~~ 90 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDH----YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--I------------XEPR 90 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T------------TCTH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C------------CCch
Confidence 466778888 677776544321 233678888899999999999999999987743 2 3566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTG 187 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 187 (296)
.|..+-..|...|++++|...|+...+..|.+..
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 7788888999999999999999999887665443
No 97
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.28 E-value=0.14 Score=43.49 Aligned_cols=31 Identities=6% Similarity=-0.128 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 151 TENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 151 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
+...|..+-.+|.+.|++++|...|++..+.
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555443
No 98
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.27 E-value=0.13 Score=37.32 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=67.9
Q ss_pred cccccCCH---HHHHhhcccCCcccCCCcee----eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCC
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCDYAI----SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGS 150 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p~~~----t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p 150 (296)
.+.+.|++ .+.|++..+. .|+.. .|..+-..|.+.|+.++|.+.|++..+.. |+. +
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~----------~ 73 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTH----------D 73 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTS----------T
T ss_pred HHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCC----------c
Confidence 45567777 6666665543 22223 67778889999999999999999988753 221 1
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 044945 151 T-ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG 187 (296)
Q Consensus 151 ~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 187 (296)
. ...+..+-..|.+.|++++|...|++..+..|.+..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 1 456677778899999999999999999987765543
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.27 E-value=0.088 Score=40.18 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=62.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|-.+-..|.+.|+.++|.+.|++-.+.. | -+..+|..+=..|.+.|++++|...|++..+..|.
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQ--E------------RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 456677888999999999999999987742 2 36788999999999999999999999999998888
Q ss_pred CcchhHHh
Q 044945 185 NTGAYVIL 192 (296)
Q Consensus 185 ~~~~y~~l 192 (296)
+..+|..+
T Consensus 98 ~~~~~~~l 105 (150)
T 4ga2_A 98 QKDLVLKI 105 (150)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 87777766
No 100
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.21 E-value=0.049 Score=49.07 Aligned_cols=130 Identities=9% Similarity=-0.005 Sum_probs=92.7
Q ss_pred HHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCC-H---HHHHhhcccC
Q 044945 20 LAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGS-V---RKVFEIMAVR 95 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~-~---~~~f~~M~~~ 95 (296)
+.+.|+ .++|++.|++..+..-. .. ..+..+-..|.+.|+ + ...|++..+.
T Consensus 107 ~~~~g~-~~~Al~~~~~al~l~P~--~~----------------------~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 107 LQRDER-SERAFKLTRDAIELNAA--NY----------------------TVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp HHHTCC-CHHHHHHHHHHHHHCTT--CH----------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCC-hHHHHHHHHHHHHhCcc--CH----------------------HHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 333465 88888888888764321 11 011111234556675 6 6666665543
Q ss_pred CcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044945 96 DFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVA 175 (296)
Q Consensus 96 ~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 175 (296)
+- -+...|+-+-..|.+.|+.++|++.|++..+.. +-+...|.-+-..|.+.|++++|...|
T Consensus 162 ~P----~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------------P~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 162 QP----KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------------AKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp CT----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------ccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 21 123678989999999999999999999987743 246788888888999999999999999
Q ss_pred HHHHhcCCCCcchhHHh
Q 044945 176 DMILMIEPNNTGAYVIL 192 (296)
Q Consensus 176 ~~m~~~~~~~~~~y~~l 192 (296)
++..+..|.+...|+.+
T Consensus 224 ~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHH
Confidence 99999988888888777
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.15 E-value=0.11 Score=42.01 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=68.9
Q ss_pred HHHHhccCChhHHHHHHHHHHHcCCccChhh-hhh--hhcc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 044945 111 TAGCGQNGPFDEGLKFFGQMLMAKIKARHAP-FSR--IMHA-GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNT 186 (296)
Q Consensus 111 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-y~~--li~~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (296)
-..+.+.|+.++|.+.|++..+.. |+... |.. +-.. ......++.+-..|.+.|++++|...|++..+..|.+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 345678999999999999987743 43221 110 0000 11122233377788899999999999999998888888
Q ss_pred chhHHh--------hHHHHHHHHHHHHhCCCcCCCcc
Q 044945 187 GAYVIL--------INEALKDLLERMEQEGYVPDTKE 215 (296)
Q Consensus 187 ~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t 215 (296)
..|..+ ..++|...|++..+. .|+...
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~ 123 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLA 123 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHH
Confidence 777777 678888888887764 466433
No 102
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.15 E-value=0.1 Score=38.57 Aligned_cols=88 Identities=6% Similarity=0.039 Sum_probs=66.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.+|.-+=..|.+.|++++|++.|++-.+. .| -+...|+-+=..|.+.|++++|...|++..+..|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p------------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DP------------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC------------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 34555667889999999999999998763 23 35677888889999999999999999998876554
Q ss_pred Ccc-------hhHHh--------hHHHHHHHHHHHHh
Q 044945 185 NTG-------AYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 185 ~~~-------~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+.. +|..+ .+++|.+.|++-..
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332 22222 57888888776554
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.14 E-value=0.062 Score=43.43 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=61.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchh
Q 044945 110 ITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAY 189 (296)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y 189 (296)
+-..|.+.|+.++|.+.|++..+.. | -+...|..+-..|...|++++|...|++..+..|.+..+|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 125 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--P------------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--C------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 7888999999999999999987743 2 3678899999999999999999999999999999888888
Q ss_pred HHh
Q 044945 190 VIL 192 (296)
Q Consensus 190 ~~l 192 (296)
..+
T Consensus 126 ~~l 128 (208)
T 3urz_A 126 IFL 128 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.03 E-value=0.056 Score=43.18 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=71.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..+..+-..|.+.|+.++|.+.|++. + .|+...|..+-..|.+.|++++|...|++..+..|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~-------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 69 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----Q-------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----S-------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----c-------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34556667888999999999999865 2 246778999999999999999999999999988887
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...|..+ ..++|...|++..+.
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 77777666 689999999888775
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.02 E-value=0.064 Score=41.00 Aligned_cols=96 Identities=6% Similarity=0.009 Sum_probs=74.8
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE 152 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~ 152 (296)
..|.+.|+. .+.|++..+. .| +..+|..+-..|.+.|+.++|+..|++..+.. | -+.
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p------------~~~ 99 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINV-----QERDPKAHRFLGLLYELEENTDKAVECYRRSVELN--P------------TQK 99 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--C------------CCH
Confidence 578888888 6677765543 22 23789999999999999999999999987742 2 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCcchhHH
Q 044945 153 NVWLTLLSACRVHRNVELAEKV-ADMILMIEPNNTGAYVI 191 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~y~~ 191 (296)
..|..+-..|.+.|+.++|.+. +++..+..|.+...|..
T Consensus 100 ~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 100 DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 7888888999999999876655 58888888888776654
No 106
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.02 E-value=0.23 Score=38.34 Aligned_cols=105 Identities=8% Similarity=-0.054 Sum_probs=75.7
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHH-HhccCCh--hHHHHHHHHHHHcCCccChhhhhhhhccCC
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAG-CGQNGPF--DEGLKFFGQMLMAKIKARHAPFSRIMHAGS 150 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~-~~~~g~~--~~A~~l~~~M~~~g~~pd~~ty~~li~~~p 150 (296)
..|...|+. ...|++..+.+- .+...|..+-.. |.+.|+. ++|.+.|++..+.. | .
T Consensus 52 ~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--p------------~ 113 (177)
T 2e2e_A 52 EYYLWQNDYSNSLLAYRQALQLRG----ENAELYAALATVLYYQASQHMTAQTRAMIDKALALD--S------------N 113 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--T------------T
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--C------------C
Confidence 567778888 666666543211 122567777777 7789998 99999999988753 2 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh-hHHHHHH
Q 044945 151 TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL-INEALKD 199 (296)
Q Consensus 151 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l-~~~~a~~ 199 (296)
+...|..+-..|.+.|++++|...|++..+..|.+.....++ ..+.+.+
T Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~~~ 163 (177)
T 2e2e_A 114 EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKL 163 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Confidence 567788888899999999999999999998887665544443 3444433
No 107
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.094 Score=38.16 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=68.6
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ ...|++..+.+- .+...|..+-..|.+.|+.++|++.|++..+.. | .+..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~ 73 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--P------------NFVR 73 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C------------CcHH
Confidence 345677777 666665543221 133789999999999999999999999987743 2 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
.|..+-..|...|++++|...|++..+..
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 88888899999999999999999998776
No 108
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.00 E-value=0.073 Score=38.50 Aligned_cols=69 Identities=6% Similarity=-0.027 Sum_probs=58.2
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
...|..+-..|.+.|+.++|.+.|++..+.. | -+...|..+-..|.+.|+.++|...|++..+..|
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQF--P------------NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3678889999999999999999999988753 2 3567788888999999999999999999988766
Q ss_pred CCc
Q 044945 184 NNT 186 (296)
Q Consensus 184 ~~~ 186 (296)
.+.
T Consensus 93 ~~~ 95 (117)
T 3k9i_A 93 DDE 95 (117)
T ss_dssp CCH
T ss_pred CcH
Confidence 543
No 109
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.98 E-value=0.13 Score=44.28 Aligned_cols=96 Identities=9% Similarity=0.070 Sum_probs=75.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN-VWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..|..+...+.+.|++++|.++|++..+ +.|+ +.. +|..+...+.+.|++++|..+|++..+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLA--IEDI------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSS------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--cccc------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999987 3332 233 899999999999999999999999998777
Q ss_pred CCcchhHHh---------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 184 NNTGAYVIL---------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 184 ~~~~~y~~l---------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
.+...|... ..++|.++|++..+. .|+...+
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 205 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEY 205 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 665555433 356788888877653 4654333
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=94.42 E-value=0.11 Score=40.55 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=57.7
Q ss_pred cccccCCH---HHHHhhcccCCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhh---------
Q 044945 78 RPSRSGSV---RKVFEIMAVRDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSR--------- 144 (296)
Q Consensus 78 ~y~k~g~~---~~~f~~M~~~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~--------- 144 (296)
.|.+.|++ ...|++..+. .| +...|..+-..|.+.|+.++|.+.|++..+. .|+...+..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDE-----LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHH-----HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 45566777 6666665432 12 2256777888888888888888888775432 122111110
Q ss_pred ------------hhccCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 145 ------------IMHAGS-TENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 145 ------------li~~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.+...| +...+..+-..|...|++++|...|++..+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 000033 356666666666677777777777776666554
No 111
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.41 E-value=0.13 Score=36.83 Aligned_cols=92 Identities=7% Similarity=-0.023 Sum_probs=68.6
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC--
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-- 151 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-- 151 (296)
..|.+.|++ ...|++..+.+- .+...|..+-..|.+.|+.++|...|.+..+.. |+. .++
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~---------~~~~~ 76 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--REN---------REDYR 76 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHS---------TTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--ccc---------chhHH
Confidence 455667777 666666544321 233678889999999999999999999987743 110 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 152 --ENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 152 --~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..+|..+-..|.+.|++++|...|++..+..+
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66788888999999999999999999988765
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.33 E-value=0.084 Score=45.10 Aligned_cols=26 Identities=0% Similarity=-0.180 Sum_probs=14.5
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQM 130 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M 130 (296)
..+..+-..|.+.|+.++|.+.|++.
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555566666666555554
No 113
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.17 E-value=0.36 Score=44.95 Aligned_cols=95 Identities=7% Similarity=0.053 Sum_probs=69.1
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-GSTE-NVWLTLLSACRVHRNVELAEKVADMILMI- 181 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-~p~~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~- 181 (296)
.++|.|...|...|++++|+.++++..+- |-.++.. .|++ .+++-|=..|...|++++|+.++++..+.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i--------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDG--------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999987541 1222221 4554 67899999999999999999999987542
Q ss_pred ----CCCCcchh---HHh--------hHHHHHHHHHHHHhC
Q 044945 182 ----EPNNTGAY---VIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 182 ----~~~~~~~y---~~l--------~~~~a~~l~~~M~~~ 207 (296)
++....+- +.+ ..++|+.++.++++.
T Consensus 424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333222 222 568888888887653
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.16 E-value=0.33 Score=42.42 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=78.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhh--hhhcc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFS--RIMHA-GSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~--~li~~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
..|+.+-..|.+.|+.++|.+.|++-.+.. |+...+. ..... .-....|..+-..|.+.|++++|...+++..+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578888899999999999999999987743 2210000 00000 011578888999999999999999999999999
Q ss_pred CCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 182 EPNNTGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 182 ~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
.|.+...|..+ .+++|...|++..+. .|+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~ 263 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNN 263 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSC
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 88888777766 689999999887764 4554
No 115
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.14 E-value=0.21 Score=44.93 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=69.5
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhh-hhhhhcc----------------------CCCHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAP-FSRIMHA----------------------GSTENVWLTLLSA 161 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-y~~li~~----------------------~p~~~~~~~Li~~ 161 (296)
..|+.+-..|.+.|+.++|++.|++..+. .|+..+ |..+-.. +-+...|+-+=..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45888888899999999999999998773 343222 1111000 2355677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 162 CRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 162 ~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|.+.|++++|...|++..+..|.+...|..+ .+++|...+++..+.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 7777777777777777777777777666666 457777788777764
No 116
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.13 E-value=0.12 Score=37.88 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=68.4
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..+.+.|++ ...|++..+.+- -+...|..+=..|.+.|+.++|+..|++-.+.. | -+..
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P------------~~~~ 86 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP----EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P------------KDIA 86 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CCHH
Confidence 456778888 667776654321 133678888899999999999999999987743 2 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.|..|-..|.+.|+.++|...+++..+..|.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 8888999999999999999999999877664
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.11 E-value=0.27 Score=46.14 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh-----------hHHHHHHHHHHHHhCC
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL-----------INEALKDLLERMEQEG 208 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l-----------~~~~a~~l~~~M~~~g 208 (296)
.+...|..+-..|.+.|++++|...+++..+..|.+...+..+ ..++|.+.+++..+.+
T Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 3567788888888888888888888888888777666666555 3566777777776543
No 118
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.93 E-value=0.19 Score=36.71 Aligned_cols=90 Identities=8% Similarity=-0.104 Sum_probs=70.2
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|.+.|++ ...|++..+.+- .+...|..+-..|.+.|+.++|...|++..+.. | .+..
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~ 78 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD--G------------QSVK 78 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------TCHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--c------------hhHH
Confidence 466778888 666666544321 123678999999999999999999999987743 2 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.|..+-..|...|++++|...|++..+..|.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8889999999999999999999998876543
No 119
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.92 E-value=0.74 Score=36.26 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=74.5
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhh-hcc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRI-MHA---GSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l-i~~---~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
..|..+-..|.+.|++++|.+.|.+-.+.. |+...+... +.. ......|..+-..|.+.|++++|...+++..+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 457777788999999999999999987732 221111000 000 00136788888899999999999999999998
Q ss_pred cCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 181 IEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 181 ~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
..|.+...|..+ .+++|.+.|++-.+. .|+.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 155 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNN 155 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTC
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCc
Confidence 888777666665 678888888876654 3543
No 120
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.81 E-value=0.27 Score=34.43 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=54.7
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
...|..+-..|.+.|+.++|.+.|++..+.. | .+...|..+=..|.+.|++++|...|++..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD--P------------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3568888899999999999999999988753 2 35568888999999999999999999988764
No 121
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.80 E-value=0.44 Score=36.26 Aligned_cols=103 Identities=11% Similarity=0.099 Sum_probs=74.7
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHc------CCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMA------KIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~------g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
.|...=..|.+.|++++|++.|.+-.+. .-.|+...+..+ . +-+...|.-+-.+|.+.|++++|...+++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL-D-RKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHH-H-HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH-H-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4666667889999999999999987663 001221111100 0 2345678888899999999999999999999
Q ss_pred hcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCC
Q 044945 180 MIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 180 ~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~ 212 (296)
+..|.+...|..+ .+++|...|++-.+. .|+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 9888888777766 678888888776654 454
No 122
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.70 E-value=0.21 Score=46.05 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=71.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc---------CCHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH---------RNVELAEKVA 175 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~---------g~~~~A~~~~ 175 (296)
..|..+-..|.+.|+.++|.+.|++..+. .|+...|..+-..|... |++++|...|
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~ 202 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTH---------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHH
Confidence 56777778888888888888888776653 46667788888888888 9999999999
Q ss_pred HHHHhcCCCCcchhHHh------h----------HHHHHHHHHHHHhC
Q 044945 176 DMILMIEPNNTGAYVIL------I----------NEALKDLLERMEQE 207 (296)
Q Consensus 176 ~~m~~~~~~~~~~y~~l------~----------~~~a~~l~~~M~~~ 207 (296)
++..+..|.+...|..+ . +++|.+.|++-.+.
T Consensus 203 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 99999988888777776 3 68888888887764
No 123
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.69 E-value=0.32 Score=38.43 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=62.4
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|++.+++..+.. +.+...|..+-..|...|++++|...|++..+..|.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 578888889999999999999999987742 246677888889999999999999999999988887
Q ss_pred CcchhHHh
Q 044945 185 NTGAYVIL 192 (296)
Q Consensus 185 ~~~~y~~l 192 (296)
+...+..+
T Consensus 155 ~~~~~~~l 162 (198)
T 2fbn_A 155 NLDIRNSY 162 (198)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 76666655
No 124
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.48 E-value=0.35 Score=33.79 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 151 TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 151 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+...|..+=..|.+.|++++|...|++..+..|.+...|..+ ..++|.+.+++-.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788888999999999999999999999988888887777 67888888776554
No 125
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.43 E-value=0.48 Score=33.65 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.+...|..+-..|.+.|++++|...|++..+..|.+...|..+ ..++|...|++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3667888888999999999999999999998888777777666 67888888877654
No 126
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.35 E-value=0.39 Score=34.15 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=55.9
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
...|..+-..|.+.|++++|++.|++..+.. +.+...|..+-..|.+.|++++|...|++..+..|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------------PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4678888899999999999999999987743 23567888889999999999999999999876543
No 127
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.01 E-value=0.15 Score=49.42 Aligned_cols=170 Identities=6% Similarity=-0.072 Sum_probs=98.6
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-CCCHHHHHHHHHHHHh
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-GSTENVWLTLLSACRV 164 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-~p~~~~~~~Li~~~~~ 164 (296)
..+...++.+.. .|+...-.. +.+ ...|+.++|++.|++..+..+.. -... +.+...|..+-..|.+
T Consensus 378 ~~~~~~L~~p~~---~p~~~~a~~-~~a-~~~~~~~~A~~~~~~al~~~~~~-------~~~~~p~~~~~~~~~a~~~~~ 445 (681)
T 2pzi_A 378 NEIVTALSVPLV---DPTDVAASV-LQA-TVLSQPVQTLDSLRAARHGALDA-------DGVDFSESVELPLMEVRALLD 445 (681)
T ss_dssp HHHHHHSCCBCC---CTTSTTHHH-HHH-TTTCCHHHHHHHHHHHHTC--------------CCTTCSHHHHHHHHHHHH
T ss_pred HHHHhhCCCccC---CCCCcchHH-hhc-ccccCHHHHHHHHHHhhhhcccc-------cccccccchhHHHHHHHHHHh
Confidence 445555554444 554333222 233 78899999999999987211100 0000 2355678888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCccceeecch-----hhhhhhhhh
Q 044945 165 HRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKEVLLDVEE-----EQKKNILYY 231 (296)
Q Consensus 165 ~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~-----~~~~~~~~~ 231 (296)
.|++++|...|++..+..|.+...|..+ .+++|.+.|++-.+. .|+.......++. +...+ +..
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 9999999999999988888787777666 678898888877654 4553333222111 11111 111
Q ss_pred hhHHHHHHHHhhcCCCCCe-EEEEecccCccchhhHHHHHhhhhc
Q 044945 232 HGERLALVFGIISTPDGTT-IRVIKNLPSLRGLRHGNKVVSKIVH 275 (296)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~ii~~~~k~g~~~~A~~~f~~m~~ 275 (296)
.... ..+ .+..... ..+-..|.+.|+.++|.+.|++..+
T Consensus 523 ~~~a----l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 523 YQTV----WST-NDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHH----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHH----HHh-CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 1111 111 1111000 0002347789999999999987664
No 128
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=92.96 E-value=0.22 Score=46.18 Aligned_cols=90 Identities=9% Similarity=0.114 Sum_probs=66.8
Q ss_pred eeHHHHHHHHhc-------cCChh-------HHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHH
Q 044945 105 ISRNSITAGCGQ-------NGPFD-------EGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVEL 170 (296)
Q Consensus 105 ~t~n~li~~~~~-------~g~~~-------~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~ 170 (296)
..|......+.+ .|+++ +|.++|++-.+. +.| -+...|..+...+.+.|++++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p------------~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK------------KNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCS------------SCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCc------------ccHHHHHHHHHHHHhcCCHHH
Confidence 567777777765 68887 888888776431 222 357789999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-chhHHh--------hHHHHHHHHHHHHhC
Q 044945 171 AEKVADMILMIEPNNT-GAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 171 A~~~~~~m~~~~~~~~-~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
|..+|++..+..|.+. ..|... ..++|.++|++-.+.
T Consensus 340 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 340 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999988766553 356554 568888888877664
No 129
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=92.94 E-value=0.49 Score=43.67 Aligned_cols=79 Identities=9% Similarity=0.120 Sum_probs=46.7
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccC-hhhhhhhhcc---------------------CCCHHHHHHHHHHHHhcCCHH
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKAR-HAPFSRIMHA---------------------GSTENVWLTLLSACRVHRNVE 169 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~---------------------~p~~~~~~~Li~~~~~~g~~~ 169 (296)
..|.+.|+.++|.+.|++-.+. .|+ ..+|..+-.. +.+...|..+-..|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456789999999999988774 232 2222222211 224455666666666666666
Q ss_pred HHHHHHHHHHhcCCCCcchhHHh
Q 044945 170 LAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 170 ~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
+|...|++..+..|.+...+..+
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l 114 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKY 114 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666666555554444433
No 130
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.86 E-value=1.3 Score=35.77 Aligned_cols=91 Identities=5% Similarity=0.027 Sum_probs=58.1
Q ss_pred ccCChhHHHHHHHHHHHcCCccChh-hhhhhhcc---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---
Q 044945 116 QNGPFDEGLKFFGQMLMAKIKARHA-PFSRIMHA---GST-ENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG--- 187 (296)
Q Consensus 116 ~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~li~~---~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--- 187 (296)
..|+.++|.+.|++..+.- |+.. .+.+.... ... ....-.+-..|.+.|++++|...|+++.+..|.+..
T Consensus 108 ~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 3678999999999987742 4332 11111110 000 011124456788999999999999999988775542
Q ss_pred hhHHh--------hHHHHHHHHHHHHhCC
Q 044945 188 AYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 188 ~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
.+..+ ..++|.+.++.+...+
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 22222 6788989998887754
No 131
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=92.86 E-value=0.62 Score=42.98 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=30.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSA--CRVHRNVELAEKVADM 177 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~--~~~~g~~~~A~~~~~~ 177 (296)
.+|..+-..|.+.|+.++|++.|++..+.. | -+...+..+-.+ +.+.|++++|...+++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVK--P------------HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--T------------TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445555555555666666666665554421 1 123344444444 7888999999888775
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.84 E-value=0.3 Score=42.65 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=66.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP- 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~- 183 (296)
.++..+-..|...|+.++|++++.+-...|-. .-+...+-.++..|.+.|+++.|.+.+++|.+..+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEA------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 55567778899999999999999886443311 12567788889999999999999999999987755
Q ss_pred ----CCcchhH------Hh-----hHHHHHHHHHHHHhC
Q 044945 184 ----NNTGAYV------IL-----INEALKDLLERMEQE 207 (296)
Q Consensus 184 ----~~~~~y~------~l-----~~~~a~~l~~~M~~~ 207 (296)
.+..... .+ ..++|..+|+++.+.
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 2332222 22 467888888888654
No 133
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=92.60 E-value=1.1 Score=41.52 Aligned_cols=69 Identities=4% Similarity=0.010 Sum_probs=47.6
Q ss_pred CCc-eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 101 CDY-AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 101 ~p~-~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
.|+ ...|..+...+.+.|+.++|.++|++..+. .|+.. ...|..+...+.+.|++++|..+|++..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP-----------TLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 343 467999999999999999999999999873 34321 1355555555566666666666666655
Q ss_pred hcC
Q 044945 180 MIE 182 (296)
Q Consensus 180 ~~~ 182 (296)
+..
T Consensus 384 ~~~ 386 (530)
T 2ooe_A 384 EDA 386 (530)
T ss_dssp TCT
T ss_pred hcc
Confidence 543
No 134
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.38 E-value=0.3 Score=42.80 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=53.1
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.|+-+-.+|.+.|++++|++.|++-.+.. | .+...|..+-.+|...|++++|...|++..+..|.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--E------------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 78888899999999999999999887642 2 366788888899999999999999999998877766
Q ss_pred cchhHHh---------hHHHHHHHHHHHH
Q 044945 186 TGAYVIL---------INEALKDLLERME 205 (296)
Q Consensus 186 ~~~y~~l---------~~~~a~~l~~~M~ 205 (296)
...+..+ ..+++..++..|.
T Consensus 298 ~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 298 KAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666555 2344555555554
No 135
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.34 E-value=0.61 Score=42.71 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=73.1
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCc----------------eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDY----------------AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKA 137 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~----------------~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~p 137 (296)
..|.+.|++ ...|++-.+. .|+ ...|+-+-.+|.+.|+.++|++.|++..+.. |
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p 348 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSW-----LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--S 348 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T
T ss_pred HHHHhCCCHHHHHHHHHHHHHH-----hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C
Confidence 567778888 5555544331 122 2678889999999999999999999987742 2
Q ss_pred ChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 138 RHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 138 d~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.+...|..+=.+|.+.|++++|...|++..+..|.+...|..+
T Consensus 349 ------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 391 (457)
T 1kt0_A 349 ------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391 (457)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHH
T ss_pred ------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3677788888899999999999999999999888887777776
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.29 E-value=0.65 Score=39.91 Aligned_cols=144 Identities=9% Similarity=0.033 Sum_probs=89.2
Q ss_pred HHHHHhhcccHHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH---HHHHhhcc
Q 044945 17 SNGLAGCNEFMDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMA 93 (296)
Q Consensus 17 n~~~~~~~~~~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~ 93 (296)
-.++...|+ +++|.++|+.....+ ++.. ... ..-..|.+.+++ ...|+...
T Consensus 109 A~~L~~~g~-y~eA~~~l~~~~~~~--p~~~--------------------~~~---~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 109 AACEAAQGN-YADAMEALEAAPVAG--SEHL--------------------VAW---MKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp HHHHHHHTC-HHHHHHHHTSSCCTT--CHHH--------------------HHH---HHHHHHHHTTCHHHHHHHHTTGG
T ss_pred HHHHHHCCC-HHHHHHHHHHHHhcC--CchH--------------------HHH---HHHHHHHHcCCHHHHHHHHHHhh
Confidence 345555576 999999988876532 1111 001 011266778888 66665332
Q ss_pred cCCcccCCCc--eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHH
Q 044945 94 VRDFLEYCDY--AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELA 171 (296)
Q Consensus 94 ~~~~~~~~p~--~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A 171 (296)
... .|. ...+..+=.++.+.|++++|++.|++-......|.. ....+..+=.++.+.|+.++|
T Consensus 163 ~~~----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-----------~~da~~~~glaL~~lGr~deA 227 (282)
T 4f3v_A 163 KWP----DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-----------ARAIAWYLAMARRSQGNESAA 227 (282)
T ss_dssp GCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-----------HHHHHHHHHHHHHHHTCHHHH
T ss_pred ccC----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-----------cHHHHHHHHHHHHHcCCHHHH
Confidence 211 010 124566667899999999999999987643221321 223444555688899999999
Q ss_pred HHHHHHHHhcCCCCcchhHHhhHHHHHHHHHHHHhCCCcCCCc
Q 044945 172 EKVADMILMIEPNNTGAYVILINEALKDLLERMEQEGYVPDTK 214 (296)
Q Consensus 172 ~~~~~~m~~~~~~~~~~y~~l~~~~a~~l~~~M~~~g~~p~~~ 214 (296)
..+|+++....|. . .....+....+.|.+.
T Consensus 228 ~~~l~~a~a~~P~-~------------~~~~aL~~~~~~~~~t 257 (282)
T 4f3v_A 228 VALLEWLQTTHPE-P------------KVAAALKDPSYRLKTT 257 (282)
T ss_dssp HHHHHHHHHHSCC-H------------HHHHHHHCTTCCCCCC
T ss_pred HHHHHHHHhcCCc-H------------HHHHHHhCCCCCCCCC
Confidence 9999999988774 3 3444555556655544
No 137
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.01 E-value=1.4 Score=36.27 Aligned_cols=118 Identities=9% Similarity=-0.014 Sum_probs=82.6
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCc-eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDY-AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTE 152 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~-~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~ 152 (296)
..|.+.|++ ...|++..+.+-. .|. ...|.-+-..|.+.|+.++|.+.|++..+.. |+. ....
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~---------~~~~ 89 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRT--HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QID---------PRVP 89 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC---------TTHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCC---------chhH
Confidence 456677888 7778777654210 010 3567778889999999999999999988752 221 0113
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCcchhHH-----------------h--------hHHHHHH
Q 044945 153 NVWLTLLSACRV--------HRNVELAEKVADMILMIEPNNTGAYVI-----------------L--------INEALKD 199 (296)
Q Consensus 153 ~~~~~Li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~y~~-----------------l--------~~~~a~~ 199 (296)
..+..+-..|.+ .|++++|...|++..+..|.+...+.. + .+++|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 455566667777 999999999999999887766544422 1 5788888
Q ss_pred HHHHHHhC
Q 044945 200 LLERMEQE 207 (296)
Q Consensus 200 l~~~M~~~ 207 (296)
.|++..+.
T Consensus 170 ~~~~~l~~ 177 (261)
T 3qky_A 170 TYEAVFDA 177 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 138
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.88 E-value=1.3 Score=37.57 Aligned_cols=167 Identities=7% Similarity=-0.085 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhHhcccCCCccccHHHHHhcCCCcc--CCceehhhhhcccccccccccCCH---HHHHhhcc----cCCc
Q 044945 27 MDKANGITDRFEERAVSIGHYADLDGISDQLPSSS--GGRQVDIHFDGGVDGLRPSRSGSV---RKVFEIMA----VRDF 97 (296)
Q Consensus 27 ~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~--~~~~~~~~~~~~~~i~~y~k~g~~---~~~f~~M~----~~~~ 97 (296)
+++|.+.|.+.-..-...|.++.|...+...-... .+........+.-+-..|.+.|+. ...|++-. +.+-
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 77888877775432223566666666543322110 000000111223334677788888 34444322 1111
Q ss_pred ccCCC-ceeeHHHHHHHHhcc-CChhHHHHHHHHHHHcCCccChhhhhhhhccCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044945 98 LEYCD-YAISRNSITAGCGQN-GPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGS-TENVWLTLLSACRVHRNVELAEKV 174 (296)
Q Consensus 98 ~~~~p-~~~t~n~li~~~~~~-g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p-~~~~~~~Li~~~~~~g~~~~A~~~ 174 (296)
.+ -..+|+.+-..|.+. |+.++|++.|++-.+.. |+.- ..+ ...+|+-+-..|.+.|++++|...
T Consensus 113 ---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 113 ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQ-------SVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCC-------ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 00 124788888999996 99999999999876521 1000 000 135688888999999999999999
Q ss_pred HHHHHhcCCCCcc-------hhHHh--------hHHHHHHHHHHHH
Q 044945 175 ADMILMIEPNNTG-------AYVIL--------INEALKDLLERME 205 (296)
Q Consensus 175 ~~~m~~~~~~~~~-------~y~~l--------~~~~a~~l~~~M~ 205 (296)
|++..+..|.+.. +|..+ ..++|...+++-.
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887654332 22222 5677777776543
No 139
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=91.27 E-value=1 Score=39.94 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=75.0
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCC-ccChhhhhhhhcc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKI-KARHAPFSRIMHA-GSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~li~~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.|..+-..|.+.|+.++|++.|++-.+.-- .|....+...... .-+...|+-+-..|.+.|++++|...+++..+..|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 477788899999999999999998775100 0000001111111 23567888888999999999999999999999888
Q ss_pred CCcchhHHh--------hHHHHHHHHHHHHhCCCcCC
Q 044945 184 NNTGAYVIL--------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 184 ~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~ 212 (296)
.+...|..+ .+++|.+.|++..+. .|+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~ 339 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APE 339 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC
Confidence 777666666 678898888877654 454
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.80 E-value=0.84 Score=31.59 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCC
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
++...|..+-..+.+.|++++|...|++..+..|.+...|..+ .+++|...+++..+. .|+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 4566788888899999999999999999999888787777666 689999999887754 4543
No 141
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=90.75 E-value=1.4 Score=40.27 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=75.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhh----hhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFS----RIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~----~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
..|+.+-..|.+.|++++|...|++-.+. .|+...+. .-+. .-....|.-+-.+|.+.|++++|...+++..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASE-SFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35777888999999999999999998763 12210000 0000 01157788888899999999999999999999
Q ss_pred cCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCCCcc
Q 044945 181 IEPNNTGAYVIL--------INEALKDLLERMEQEGYVPDTKE 215 (296)
Q Consensus 181 ~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~~~t 215 (296)
..|.+..+|..+ .+++|...|++..+. .|+...
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~ 386 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKA 386 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----C
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHH
Confidence 888887776666 689999999887764 565443
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.59 E-value=2.3 Score=33.13 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=69.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-GSTENVWLTLLSACRVHRNVELAEKVADMILMI---- 181 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---- 181 (296)
+...=..+.+.|++++|++.|++-.+. .|+... ..-+.. .-+...|+-+=.++.+.|++++|...+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~-~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPP-EEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCT-TSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcc-hhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445556678899999999999998763 232100 000000 113448999999999999999999999999988
Q ss_pred ---CCCCcchh----HHh--------hHHHHHHHHHHHHh
Q 044945 182 ---EPNNTGAY----VIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 182 ---~~~~~~~y----~~l--------~~~~a~~l~~~M~~ 206 (296)
.|.+...| .-. ..++|..-|++-.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88777777 433 67888887776543
No 143
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=90.38 E-value=1.1 Score=39.13 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=72.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-----GSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-----~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
..|..+-..|.+.|++++|...|.+-.+. .|+...|...-.- .-....|+-+-..|.+.|++++|...+++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45777778889999999999999987653 2443322111000 0011367888889999999999999999999
Q ss_pred hcCCCCcchhHHh--------hHHHHHHHHHHHHhCCCcCC
Q 044945 180 MIEPNNTGAYVIL--------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 180 ~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g~~p~ 212 (296)
+..|.+...|..+ .+++|...|++..+ +.|+
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~ 296 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPD 296 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCC
Confidence 9888787776666 67888888876543 3454
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.31 E-value=1.1 Score=33.86 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=59.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|.-+-.+|.+.|++++|+..+++-.+.. | .+...|..+=.+|...|++++|...|++..+..|.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE--E------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--C------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 678889999999999999999999987742 2 46778888899999999999999999999988776
Q ss_pred Cc
Q 044945 185 NT 186 (296)
Q Consensus 185 ~~ 186 (296)
+.
T Consensus 130 ~~ 131 (162)
T 3rkv_A 130 AA 131 (162)
T ss_dssp GH
T ss_pred CH
Confidence 55
No 145
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=90.29 E-value=3 Score=33.51 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=68.5
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGS-TENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.+-.+-..+.+.|+.++|.+.|++..+.. |+ .| ....+..+-..|.+.|++++|...|++..+..|.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~----------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRY--PF----------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT----------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 34445567889999999999999998742 21 11 1356777888999999999999999999988776
Q ss_pred Ccc---hhHHh--------------------------hHHHHHHHHHHHHhCCCcCCCc
Q 044945 185 NTG---AYVIL--------------------------INEALKDLLERMEQEGYVPDTK 214 (296)
Q Consensus 185 ~~~---~y~~l--------------------------~~~~a~~l~~~M~~~g~~p~~~ 214 (296)
+.. ++..+ ..++|...|++..+. -|+..
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~ 130 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQ 130 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCT
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCCh
Confidence 543 22111 357888888887765 46543
No 146
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.48 E-value=1.3 Score=46.44 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=54.0
Q ss_pred ccccccCCH-HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-------
Q 044945 77 LRPSRSGSV-RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA------- 148 (296)
Q Consensus 77 ~~y~k~g~~-~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~------- 148 (296)
.++-+.|++ +.+-.=.+..+. -.|.-++..|.+.|+.++|.+.|..=++.. ++....+-+..+
T Consensus 1113 KAql~~G~~kEAIdsYiKAdD~-------say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKADDP-------SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhcCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 566666777 222222333444 667778889999999999998886544322 222111111111
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 149 --------GSTENVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 149 --------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
.|+...|..+=+.|...|++++|..+|...
T Consensus 1184 eele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1184 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 455555666666666777777777777664
No 147
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=89.33 E-value=1.4 Score=29.16 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 151 TENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 151 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
+...|..+-..|.+.|++++|...|++..+..|.+...|..+ ..++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345777788889999999999999999998887777666665 678888888877654
No 148
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.32 E-value=2.6 Score=44.25 Aligned_cols=82 Identities=10% Similarity=0.078 Sum_probs=55.1
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-----------------CCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-----------------GSTENVWLTLLSACRVHRN 167 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-----------------~p~~~~~~~Li~~~~~~g~ 167 (296)
-.|..+...|++.|++++|.+.+++= -|..+|.-+-.+ .-+...+..++..|-+.|.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC
Confidence 35777777777777777777777653 222333211111 2355567789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 168 VELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 168 ~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
+++|..+++.-...++.....|+-+
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHH
Confidence 9999999988877666666677555
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.13 E-value=8.2 Score=31.55 Aligned_cols=103 Identities=8% Similarity=0.006 Sum_probs=62.9
Q ss_pred cCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhc----cCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHH
Q 044945 82 SGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQ----NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENV 154 (296)
Q Consensus 82 ~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~ 154 (296)
.|+. .+.|++-.+.+ +..+|..+-..|.+ .|+.++|++.|++-.+.| +...
T Consensus 55 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------~~~a 112 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------------YAEG 112 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------CHHH
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------------CccH
Confidence 5555 55555544432 12567777777777 888888888888776643 3445
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchhHHh------------hHHHHHHHHHHHHhCC
Q 044945 155 WLTLLSACRV----HRNVELAEKVADMILMIEPNNTGAYVIL------------INEALKDLLERMEQEG 208 (296)
Q Consensus 155 ~~~Li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~y~~l------------~~~~a~~l~~~M~~~g 208 (296)
+..|=..|.+ .|+.++|...|++..+.+ +..++..+ ..++|...+++-.+.+
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5566666666 777777777777776654 22222222 3566666666665553
No 150
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.89 E-value=1.2 Score=40.67 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=54.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-GSTE-NVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-~p~~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.++|.|-..|...|++++|+.++++..+ .|-.++.. .|++ .++|-|=..|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIK--------PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH--------HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4799999999999999999999999764 11222221 4655 6799999999999999999999998754
No 151
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.87 E-value=1.7 Score=36.73 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=52.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.+|+.+-..|.+.|+.++|++.|++..+.........|+ -...|..+-..|...|++++|...|++..+..|.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS-------LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG-------HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 468889999999999999999999988754221111010 1125667777889999999999999998876554
No 152
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=88.79 E-value=5.1 Score=32.69 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=66.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..+-.+-..+.+.|+.++|.+.|++..+.. |+. |. ...+..+-..|.+.|++++|...|++..+..|
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~----------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTH----------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ 83 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCS----------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCC----------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence 445556677889999999999999987753 211 11 56677788889999999999999999998866
Q ss_pred CCcc---hhHHh----------------hHHHHHHHHHHHHhC
Q 044945 184 NNTG---AYVIL----------------INEALKDLLERMEQE 207 (296)
Q Consensus 184 ~~~~---~y~~l----------------~~~~a~~l~~~M~~~ 207 (296)
.+.. .+..+ ..++|...|++..+.
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4422 12111 467888888888764
No 153
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.33 E-value=2.5 Score=39.23 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=57.6
Q ss_pred HHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC
Q 044945 113 GCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-GST-ENVWLTLLSACRVHRNVELAEKVADMILMI-----EPNN 185 (296)
Q Consensus 113 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----~~~~ 185 (296)
.+-..|+.++|+.++++-.+.. ..++.. .|+ ..+++.|-..|...|++++|+.++++..+. ++..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~--------~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQ--------EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHH--------TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHH--------HHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3567899999999998876521 111111 344 368999999999999999999999987643 3333
Q ss_pred c---chhHHh--------hHHHHHHHHHHH
Q 044945 186 T---GAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 186 ~---~~y~~l--------~~~~a~~l~~~M 204 (296)
. .+++-| .+++|+.++++-
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 334444 567777766653
No 154
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=88.27 E-value=4.3 Score=36.23 Aligned_cols=179 Identities=8% Similarity=-0.032 Sum_probs=83.5
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccC-hhhhhhhhcc----------------
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKAR-HAPFSRIMHA---------------- 148 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~---------------- 148 (296)
.+.+++....+- .+...|+.+-..|.+.|+.++|.+.|.+..+.. |+ ..+|..+-..
T Consensus 233 ~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 233 EKLVEEALEKAP----GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp HHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhCc----cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 566665443221 223678889999999999999999999987743 43 2222221100
Q ss_pred ------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hhHH---h------
Q 044945 149 ------------------------GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG---AYVI---L------ 192 (296)
Q Consensus 149 ------------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~y~~---l------ 192 (296)
+.+..+|..+-..|.+.|++++|...|++..+..+.+.. .+.. +
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 233455667777788888888888888877766543321 1111 1
Q ss_pred hHHHHHHHHHHHHhCCCcCCCccceeecchhhhhhhhhhhhHHHHHHHHhhcCCCCCeE-EEEecccCccchhhHHHHHh
Q 044945 193 INEALKDLLERMEQEGYVPDTKEVLLDVEEEQKKNILYYHGERLALVFGIISTPDGTTI-RVIKNLPSLRGLRHGNKVVS 271 (296)
Q Consensus 193 ~~~~a~~l~~~M~~~g~~p~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~k~g~~~~A~~~f~ 271 (296)
..++|...+.+-.+ +.|+.... .+.............. ..+...... .+=..|.+.|+.++|.+.|+
T Consensus 387 ~~~~Ai~~y~kal~--i~~~~~~~---------~~~~~~l~~~~~~~l~-~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 387 CEDKAIHHFIEGVK--INQKSREK---------EKMKDKLQKIAKMRLS-KNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp CHHHHHHHHHHHHH--SCCCCHHH---------HHHHHHHHHHHHHHHH-HCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHHh--cCcccHHH---------HHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34667666665544 23432211 0000000000000010 122221111 00123678899999999999
Q ss_pred hhhcceEEEec
Q 044945 272 KIVHREMIVRD 282 (296)
Q Consensus 272 ~m~~r~~~~~~ 282 (296)
+-.+-+-..|+
T Consensus 455 kALe~~~~~p~ 465 (472)
T 4g1t_A 455 RGLESGSLIPS 465 (472)
T ss_dssp -----------
T ss_pred HHHhcCCCCCc
Confidence 88765544444
No 155
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=88.11 E-value=1.9 Score=36.77 Aligned_cols=96 Identities=4% Similarity=-0.072 Sum_probs=64.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.+|+.+-..|.+ |++++|++.|++-.+.--..+.. .--..+++-+-..|.+.|++++|...|++..+..+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL--------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 567888888888 99999999999876521000000 011456888888999999999999999998765322
Q ss_pred Cc------chhHHh--------hHHHHHHHHHHHHhCCCcCC
Q 044945 185 NT------GAYVIL--------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 185 ~~------~~y~~l--------~~~~a~~l~~~M~~~g~~p~ 212 (296)
+. .+|..+ ..++|...|++-. ..|+
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~ 226 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIPG 226 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTT
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCC
Confidence 11 122222 5788888888766 4565
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.00 E-value=0.76 Score=38.89 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=73.5
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|..+-..|.+.|+.++|.+.|++..+.. | .+...|..+-..|.+.|++++|...+++..+..|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN--P------------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 567778888999999999999999987742 2 36778888999999999999999999999988887
Q ss_pred CcchhHHh--------hHHHHHHHHHHHHh
Q 044945 185 NTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 185 ~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+...|..+ .+++|...|.+..+
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87777766 67888888877655
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=87.99 E-value=2.1 Score=33.13 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=63.9
Q ss_pred eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 044945 104 AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI-- 181 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-- 181 (296)
..+|+.+-..|...|++++|.+.|++..+.--..+.. .....+++.+-..|...|++++|...+++..+.
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH--------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLA 97 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999876621100000 124567888888999999999999999987654
Q ss_pred -CCCCc----chhHHh--------hHHHHHHHHHHHH
Q 044945 182 -EPNNT----GAYVIL--------INEALKDLLERME 205 (296)
Q Consensus 182 -~~~~~----~~y~~l--------~~~~a~~l~~~M~ 205 (296)
.+.+. ..+..+ .+++|...+++-.
T Consensus 98 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 98 SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22121 222222 5677777776654
No 158
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=87.87 E-value=2.9 Score=35.20 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=50.3
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
..+-.+-..+.+.|+.++|.+.|++..+.. | -+...+..|-..|.+.|++++|...+++..+..|
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P------------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS--N------------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--T------------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C------------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 456677788899999999999999987743 2 3556677777788888888888888887766555
No 159
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.79 E-value=2.3 Score=41.00 Aligned_cols=96 Identities=7% Similarity=-0.133 Sum_probs=68.0
Q ss_pred cccCCH---HHHHhhccc------CCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccC
Q 044945 80 SRSGSV---RKVFEIMAV------RDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAG 149 (296)
Q Consensus 80 ~k~g~~---~~~f~~M~~------~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 149 (296)
...|+. .+.|++..+ ... .| +...|..+-..|.+.|+.++|.+.|++..+.. |
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p------------ 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--G------------ 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--C------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--c------------
Confidence 456776 566666541 111 23 33578888899999999999999999987742 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
-+...|..+=..|.+.|++++|...|++..+..|.+...|..+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3556677777777788888888888888877777676666655
No 160
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=87.62 E-value=6.4 Score=34.74 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=62.6
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
..|+-+-..|.+.|+.++|++.+++-.+.. | .+...|..+=.+|.+.|++++|...|++..+..|.
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID--P------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC--c------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 678889999999999999999999987632 2 35677888888999999999999999999998887
Q ss_pred CcchhHHh
Q 044945 185 NTGAYVIL 192 (296)
Q Consensus 185 ~~~~y~~l 192 (296)
+...+..+
T Consensus 340 ~~~~~~~l 347 (370)
T 1ihg_A 340 DKAIQAEL 347 (370)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 76665555
No 161
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=86.68 E-value=2.3 Score=33.09 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=66.4
Q ss_pred eeHHHHHHHHhccCCh----------hHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc---------
Q 044945 105 ISRNSITAGCGQNGPF----------DEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH--------- 165 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~----------~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~--------- 165 (296)
..|+-+=.++.+.|++ ++|+..|++-.+-. | -+...|..|=.+|...
T Consensus 37 ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P------------~~~~A~~~LG~ay~~lg~l~P~~~~ 102 (158)
T 1zu2_A 37 DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--P------------KKDEAVWCIGNAYTSFAFLTPDETE 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--c------------CcHHHHHHHHHHHHHhcccCcchhh
Confidence 5566555566666554 58888887776632 2 2456777777777766
Q ss_pred --CCHHHHHHHHHHHHhcCCCCcchhHHh-hHHHHHHHHHHHHhCCC
Q 044945 166 --RNVELAEKVADMILMIEPNNTGAYVIL-INEALKDLLERMEQEGY 209 (296)
Q Consensus 166 --g~~~~A~~~~~~m~~~~~~~~~~y~~l-~~~~a~~l~~~M~~~g~ 209 (296)
|++++|...|++..+..|.+...+..+ ..++|-+++-+....|.
T Consensus 103 a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 103 AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhccCccccccc
Confidence 489999999999999999888888777 66888787777766544
No 162
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.59 E-value=2.9 Score=38.09 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=53.3
Q ss_pred ccCChhHHHHHHHHHHHc---CCccChhhhhhhhccCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc
Q 044945 116 QNGPFDEGLKFFGQMLMA---KIKARHAPFSRIMHAGSTE-NVWLTLLSACRVHRNVELAEKVADMILMI-----EPNNT 186 (296)
Q Consensus 116 ~~g~~~~A~~l~~~M~~~---g~~pd~~ty~~li~~~p~~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~ 186 (296)
..|+.++|+.++++-.+. -+-|+ .|++ .+++.|-..|...|++++|+.++++..+. ++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~----------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS----------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT----------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh----------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 357788888888876541 11121 3444 68999999999999999999999988643 33332
Q ss_pred ---chhHHh--------hHHHHHHHHHHH
Q 044945 187 ---GAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 187 ---~~y~~l--------~~~~a~~l~~~M 204 (296)
.+|+-| .+++|..++++-
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444 567776666553
No 163
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.41 E-value=1.9 Score=39.30 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=53.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA-GSTE-NVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-~p~~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.++|.|...|...|++++|+.++++...- |-.++.. .|++ .+++-|=..|...|++++|+.++++..+
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i--------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEP--------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHh--------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 47999999999999999999999987641 1111111 4554 6788999999999999999999998754
No 164
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=85.66 E-value=8.1 Score=31.56 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=59.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhh----hc-----c--------------CCCHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRI----MH-----A--------------GSTENVWLTLLSA 161 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l----i~-----~--------------~p~~~~~~~Li~~ 161 (296)
.++..+-..|.+.|+.++|++.|++-.+.|.. ..+..+ .. . .-+...+..|=..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKEN---SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45666667778888888888888887763321 111111 00 0 2355666666666
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCcchhHHh------------hHHHHHHHHHHHHhCC
Q 044945 162 CRV----HRNVELAEKVADMILMIEPNNTGAYVIL------------INEALKDLLERMEQEG 208 (296)
Q Consensus 162 ~~~----~g~~~~A~~~~~~m~~~~~~~~~~y~~l------------~~~~a~~l~~~M~~~g 208 (296)
|.. .|+.++|...|++..+.+ +..++..+ ..++|...+++-.+.+
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 766 777777777777766542 44444444 3466777777666655
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=85.08 E-value=3.4 Score=29.99 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 153 NVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 153 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
..|.-|=..|.+.|++++|...|++..+..|.+...|.-+ .+++|.+.+++-.+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455566788999999999999999999988888888776 67888888877654
No 166
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=85.08 E-value=2.1 Score=32.87 Aligned_cols=140 Identities=11% Similarity=0.019 Sum_probs=86.3
Q ss_pred HHhhcccHHHHHHHHHHhHhcccC--------------CCccccHHHHHhcCCCccCCceehhhhhcccccccccccCCH
Q 044945 20 LAGCNEFMDKANGITDRFEERAVS--------------IGHYADLDGISDQLPSSSGGRQVDIHFDGGVDGLRPSRSGSV 85 (296)
Q Consensus 20 ~~~~~~~~~~A~~~f~~M~~~~~~--------------~g~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~i~~y~k~g~~ 85 (296)
+...|+ +++|...|++..+.... .|..+.|...+.........+..+... + .+......+..
T Consensus 16 ~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~--~-~~~~~~~~~~~ 91 (176)
T 2r5s_A 16 LLQQGE-HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLI--A-KLELHQQAAES 91 (176)
T ss_dssp HHHTTC-HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHH--H-HHHHHHHHTSC
T ss_pred HHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHH--H-HHHHHhhcccc
Confidence 333465 88888888876554321 566677777776654332211111000 0 00000111111
Q ss_pred --HHHHhhcccCCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHH
Q 044945 86 --RKVFEIMAVRDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSAC 162 (296)
Q Consensus 86 --~~~f~~M~~~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~ 162 (296)
...|++..+. .| +...|..+-..|.+.|+.++|.+.|++..+.. |+ .++...+..|...|
T Consensus 92 ~a~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~----------~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 92 PELKRLEQELAA-----NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--LG----------AQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TT----------TTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cc----------cChHHHHHHHHHHH
Confidence 3444444332 33 23678889999999999999999999987753 21 12466888999999
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 044945 163 RVHRNVELAEKVADMILM 180 (296)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~ 180 (296)
...|+.++|...|++...
T Consensus 155 ~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHCSSCHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHH
Confidence 999999999999987643
No 167
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=84.67 E-value=5.3 Score=27.92 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=57.8
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
-+-.|=..+.+.|+.+.|...|++-.+.--.++. .+.+...++..|-.+|.+.|+++.|...+++..+..|.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3445667788999999999999987653111110 124567788999999999999999999999999888876
Q ss_pred cch
Q 044945 186 TGA 188 (296)
Q Consensus 186 ~~~ 188 (296)
...
T Consensus 80 ~~~ 82 (104)
T 2v5f_A 80 QRA 82 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 168
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=84.10 E-value=3.4 Score=36.09 Aligned_cols=92 Identities=13% Similarity=0.032 Sum_probs=61.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE-- 182 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-- 182 (296)
..+..+-..+.+.|+.++|.+.|++..+.+ |+... .-...|..+-..|...|++++|...+++..+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLR--------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChh--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345556678899999999999999998853 21100 002467888888999999999999999876541
Q ss_pred ----CCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 183 ----PNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 183 ----~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+....+|..+ .+++|...+++..+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1123334333 56677666665543
No 169
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=83.64 E-value=4.9 Score=36.48 Aligned_cols=85 Identities=8% Similarity=-0.044 Sum_probs=58.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcC---CccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 044945 110 ITAGCGQNGPFDEGLKFFGQMLMAK---IKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILMI---- 181 (296)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~M~~~g---~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---- 181 (296)
.+..+.+.|+.++|++++++..+.- +.|+ .|+ ..+++.|...|...|++++|+.++++..+.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~----------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDI----------NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT----------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCcc----------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 3566778899999999998887521 1121 232 468999999999999999999999988643
Q ss_pred -CCCCc---chhHHh--------hHHHHHHHHHHH
Q 044945 182 -EPNNT---GAYVIL--------INEALKDLLERM 204 (296)
Q Consensus 182 -~~~~~---~~y~~l--------~~~~a~~l~~~M 204 (296)
++..+ .+|+-| .+++|..++++-
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33222 334444 567777666553
No 170
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=83.45 E-value=2.1 Score=37.39 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=67.4
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCc--eeeHHHHHHHHhccCChhHHHHHHHHHHHcCCc-cChhhhhhhhccCC
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDY--AISRNSITAGCGQNGPFDEGLKFFGQMLMAKIK-ARHAPFSRIMHAGS 150 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~--~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~p 150 (296)
..|.+.|++ ...|++..+.+-. .|+ ...|..+-..|...|+.++|.+.|++..+.--. .+. ..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~ 124 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR---------LG 124 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc---------hH
Confidence 567778888 7777776553220 011 136888999999999999999999997653100 000 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 151 TENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 151 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
...+|..+-..|...|++++|...+++..+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567888889999999999999999988654
No 171
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=83.16 E-value=5.1 Score=33.16 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=47.6
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.+...-..+.+.|++++|.+.|++..+.. |+... .-...|..+-..|...|++++|...+++..+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK--------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555677889999999999999998853 32100 0135677888888888999999888887654
No 172
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=82.84 E-value=6.1 Score=33.03 Aligned_cols=121 Identities=6% Similarity=-0.101 Sum_probs=76.1
Q ss_pred cccccccCCH---HHHHhhcccCCcccCCCce----eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhcc
Q 044945 76 GLRPSRSGSV---RKVFEIMAVRDFLEYCDYA----ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHA 148 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~~~~~~~~p~~----~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 148 (296)
+..+.+.|+. .+++++..+... ..|+. ..|..+...|...|+.++|++.|.+..+.....+..
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-------- 151 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-------- 151 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--------
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH--------
Confidence 4566777888 666666554221 02332 234456677778889999999999988743221100
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----cchhHHh--------hHHHHHHHHHHHHh
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMI---EPNN----TGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---~~~~----~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.-...+|+.+-..|...|++++|...|++..+. .+.+ ..+|..+ ..++|...+++-.+
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 001346889999999999999999999998742 1112 1223333 56777777765543
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=82.84 E-value=3.2 Score=30.19 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=38.8
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCc-cChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIK-ARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
+|+.+-..|...|++++|.+.|++..+..-. ++. ..-..++..+-..|...|++++|...+++..+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666666777777777777777776542110 000 00123556666666777777777777776554
No 174
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=82.32 E-value=2.9 Score=34.70 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=47.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCc-cChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIK-ARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.+|..+-..|...|+.++|.+.|++..+..-. ++. .....+|..+-..|...|++++|...+++..+.
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 58888999999999999999999887653211 111 123455666677777777777777777766543
No 175
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=81.68 E-value=3.2 Score=28.01 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hhHHh--------hHHHHHHHHHHHHhC
Q 044945 159 LSACRVHRNVELAEKVADMILMIEPNNTG-AYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
-..+.+.|++++|...|++..+..|.+.. .|..+ ..++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34677899999999999999998887776 66666 678898888887754
No 176
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=81.45 E-value=3.3 Score=35.74 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=64.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCc-cChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIK-ARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.+|+.+-..|...|+.++|.+.|++..+..-. ++. .....+|..+-..|...|++++|...+++..+..+
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 46888899999999999999999998653110 100 11234788888899999999999999998765422
Q ss_pred C--C----cchhHHh--------hHHHHHHHHHHHHh
Q 044945 184 N--N----TGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 184 ~--~----~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
. + ..+|..+ .+++|...+++..+
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1 1 2233333 56777777766543
No 177
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=81.32 E-value=3.9 Score=35.62 Aligned_cols=55 Identities=15% Similarity=0.026 Sum_probs=37.7
Q ss_pred cccccccCCH---HHHHhhccc----CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHc
Q 044945 76 GLRPSRSGSV---RKVFEIMAV----RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMA 133 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~----~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~ 133 (296)
-..|.+.|+. .+.|++-.+ .+. .....++..+-..|.+.|+.++|.+.+++-.+.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVP---DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3567777877 444444332 111 112367888889999999999999999998764
No 178
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=81.08 E-value=24 Score=31.19 Aligned_cols=84 Identities=13% Similarity=-0.016 Sum_probs=52.5
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHc--CCccChhhhhhhhccCC-CHHHHHHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMA--KIKARHAPFSRIMHAGS-TENVWLTLLSAC 162 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~li~~~p-~~~~~~~Li~~~ 162 (296)
.++.......+. ..-...||.|=..|...|+.++|++.|++=.+- ...++ ...| ..++|+-+=..|
T Consensus 36 ~~~~~~~~~~~~---~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--------~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 36 DKVFYRTEFQNR---EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--------QAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp HHHHHHTTSCC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--------GCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHHHHHHHHH
Confidence 444444433333 333457999999999999999999999875431 00000 0022 345677777777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 044945 163 RVHRNVELAEKVADMILM 180 (296)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~ 180 (296)
...|++++|...+++..+
T Consensus 105 ~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 788888888777776654
No 179
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=80.86 E-value=3.2 Score=36.21 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=37.3
Q ss_pred cccccccCCH---HHHHhhccc-----CCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 76 GLRPSRSGSV---RKVFEIMAV-----RDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~-----~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
-..|.+.|+. .+.|++-.+ .+ .| ...++..+-..|.+.|+.++|.+.|++-.+
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNI----LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567778888 444444332 22 12 235688899999999999999999998765
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=80.82 E-value=2.5 Score=32.87 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=61.9
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVW----LTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~----~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
..|+-+=.++.+.|+.++|+..|++-.+. ||--+...|| ...| .-.=.++...|++++|...|++..
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHY--------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 47899999999999999999999998763 3333333443 4566 777778999999999999999998
Q ss_pred hcCCCCcchhHHh
Q 044945 180 MIEPNNTGAYVIL 192 (296)
Q Consensus 180 ~~~~~~~~~y~~l 192 (296)
+..|.|...+.-+
T Consensus 130 el~p~d~~~~~~~ 142 (159)
T 2hr2_A 130 EMIEERKGETPGK 142 (159)
T ss_dssp HHHHHCCSCCTTH
T ss_pred hcCCCcHHHHHHH
Confidence 8776665555444
No 181
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=80.54 E-value=4.3 Score=35.32 Aligned_cols=93 Identities=6% Similarity=0.028 Sum_probs=64.4
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCc-cChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIK-ARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI-- 181 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-- 181 (296)
.+++.+-..|...|+.++|++.|.+-.+..-. +|. .....+|+.+=..|...|++++|...|++..+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999987652111 110 112346778888999999999999999988763
Q ss_pred ---C-CCCcchhHHh--------hHHHHHHHHHHHHh
Q 044945 182 ---E-PNNTGAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 182 ---~-~~~~~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
. +....++..+ ..++|...+++-.+
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2233334444 56777777766543
No 182
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=80.18 E-value=13 Score=31.31 Aligned_cols=71 Identities=10% Similarity=-0.095 Sum_probs=52.7
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST-ENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
.+|+.+-..|.+.|+.++|++.|++..+.- |+... .++ ...|..+...+...|++++|...|++.. ..|
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMY--KEMEN-------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCC-------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 578888999999999999999999987621 10000 111 2367777778888899999999999988 655
Q ss_pred CC
Q 044945 184 NN 185 (296)
Q Consensus 184 ~~ 185 (296)
..
T Consensus 226 ~~ 227 (307)
T 2ifu_A 226 GF 227 (307)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 183
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=79.02 E-value=6.7 Score=33.73 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=42.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
..+...-..+.+.|+.++|...|++..+.+ |+... .-..+|..+-..|...|++++|...+++..+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK--------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445556667777888888888888877652 21000 0024566667777777777777777776543
No 184
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=78.64 E-value=9.2 Score=26.33 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 150 STENVWLTLLSACRVHRN---VELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
.|...+..+-.++...++ .++|..+|++..+..|.++.+...+ .+++|...++++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355556666666654443 6788888888887777777666666 6788888888877653
No 185
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=76.69 E-value=7.7 Score=33.69 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=66.1
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCc-cChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIK-ARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM--- 180 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--- 180 (296)
.+++.+-..|...|+.++|.+.|.+-.+..-. ++. .....+++.|=..|...|++++|...|++..+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999987652100 000 11234677778888999999999999998876
Q ss_pred --cCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 181 --IEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 181 --~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
..|....++..+ ..++|...+++-.+.
T Consensus 254 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 323233333333 678888888877654
No 186
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=76.58 E-value=22 Score=29.45 Aligned_cols=88 Identities=8% Similarity=-0.115 Sum_probs=61.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST----ENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+.-.+..+.+.|+.++|.+++++..+.. |+ .|+ ...+..+-..|...|+.++|...|++..+..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE--EY----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CC----------CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccc--cC----------ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh
Confidence 3344788999999999999999987632 11 122 2234456777778889999999999998753
Q ss_pred C--CCc----chhHHh--------hHHHHHHHHHHHHh
Q 044945 183 P--NNT----GAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 183 ~--~~~----~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
+ .+. .+|+.+ ..++|...+++..+
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 232 134444 57888888877763
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=75.67 E-value=26 Score=29.95 Aligned_cols=119 Identities=8% Similarity=-0.101 Sum_probs=69.9
Q ss_pred cccccccCCH---HHHHhhccc----CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChh-hhhhhhc
Q 044945 76 GLRPSRSGSV---RKVFEIMAV----RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHA-PFSRIMH 147 (296)
Q Consensus 76 i~~y~k~g~~---~~~f~~M~~----~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~li~ 147 (296)
-..|...|++ ...+++-.+ .+. .....+|..+-..+...|+.++|.+.+++.....-.++.. .+.
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~---- 214 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQP---QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI---- 214 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCG---GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH----
Confidence 3567788888 555555432 221 1122467888888999999999999999987632211110 000
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hhHHh--------hHHHHHHHHHHHH
Q 044945 148 AGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTG----AYVIL--------INEALKDLLERME 205 (296)
Q Consensus 148 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~y~~l--------~~~~a~~l~~~M~ 205 (296)
......+...+...|+.++|...+++..+..+.+.. .+..+ ..++|...+++..
T Consensus 215 ----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 215 ----SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000113344577899999999999887654432211 12222 4566766666554
No 188
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=74.85 E-value=15 Score=31.28 Aligned_cols=115 Identities=10% Similarity=-0.039 Sum_probs=76.3
Q ss_pred ccccccCCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHH
Q 044945 77 LRPSRSGSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTEN 153 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~ 153 (296)
..|...|++ .++|+.+... .|+.+..-++-..|.+.|++++|+..|+.-... |+.. -...
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~-----~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~---------~~~~ 172 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVA-----GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKF---------LAGA 172 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCT-----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHH---------HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcc---------cHHH
Confidence 456778888 8888887764 343335555556889999999999999633221 1100 0123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----cchhHHh------hHHHHHHHHHHHHhCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEP-NN----TGAYVIL------INEALKDLLERMEQEG 208 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~y~~l------~~~~a~~l~~~M~~~g 208 (296)
.+..|=.++...|+.++|...|++...... |. ...+..+ ..++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 566667789999999999999999875321 22 1112222 6799999999998753
No 189
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=74.04 E-value=33 Score=28.32 Aligned_cols=90 Identities=7% Similarity=-0.054 Sum_probs=60.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---c
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGST--ENVWLTLLSACRVHRNVELAEKVADMILM---I 181 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~ 181 (296)
+..+-..|...|+.++|++.|.+-.+...... .+. ..+|+.+-..|...|++++|...|++..+ .
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~ 187 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGI----------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS----------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC----------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 33455667778899999998888765322110 111 45788889999999999999999998873 2
Q ss_pred CCCCc----chhHHh--------hHHHHHHHHHHHHh
Q 044945 182 EPNNT----GAYVIL--------INEALKDLLERMEQ 206 (296)
Q Consensus 182 ~~~~~----~~y~~l--------~~~~a~~l~~~M~~ 206 (296)
.+.+. .+|..+ .+++|...+++-.+
T Consensus 188 ~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 188 LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23221 233333 67888887776554
No 190
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=73.88 E-value=10 Score=28.89 Aligned_cols=94 Identities=7% Similarity=-0.049 Sum_probs=61.9
Q ss_pred ccccccCCH---HHHHhhccc----CCcccCCC-ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCC-ccChhhhhhhhc
Q 044945 77 LRPSRSGSV---RKVFEIMAV----RDFLEYCD-YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKI-KARHAPFSRIMH 147 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~----~~~~~~~p-~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~li~ 147 (296)
..|...|++ ...|++..+ .+. .| ...+|+.+-..|...|+.++|.+.|.+-.+.-- .+|..
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 103 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP------- 103 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-------
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH-------
Confidence 455666776 444444322 222 12 235788888999999999999999998765310 01000
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 148 AGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 148 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
......+..+-..|...|++++|...+++..+.
T Consensus 104 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 104 -LAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 012345777888899999999999999987653
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=71.43 E-value=7.5 Score=28.03 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=36.2
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCc-cChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIK-ARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
+|+.+-..|...|+.++|.+.|++..+..-. ++. .....++..+-..|...|++++|...+++..+
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556666666667777777766665442100 000 01133455555666666777777666666543
No 192
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=71.21 E-value=22 Score=24.33 Aligned_cols=67 Identities=12% Similarity=-0.077 Sum_probs=49.8
Q ss_pred eeeHHHHHHHHhccCC---hhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 104 AISRNSITAGCGQNGP---FDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 104 ~~t~n~li~~~~~~g~---~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
.-.|..+-.++...+. .++|..+|++-.+.. +-++.....|=..+.+.|++++|...|+.+.+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--------------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--------------PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555644433 689999999987742 23556666777788999999999999999998
Q ss_pred cCCC
Q 044945 181 IEPN 184 (296)
Q Consensus 181 ~~~~ 184 (296)
..|.
T Consensus 72 ~~p~ 75 (93)
T 3bee_A 72 SNDP 75 (93)
T ss_dssp CCCT
T ss_pred hCCC
Confidence 8776
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=70.81 E-value=11 Score=29.13 Aligned_cols=86 Identities=10% Similarity=0.045 Sum_probs=59.5
Q ss_pred hccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC
Q 044945 115 GQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRN----------VELAEKVADMILMIEPN 184 (296)
Q Consensus 115 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~----------~~~A~~~~~~m~~~~~~ 184 (296)
.|.+.+++|.+.+++-.+.. | -+...|+-+=.++...|+ +++|...|++..+..|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P------------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--P------------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhHHHHHHHHHHHHHHHC--C------------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 45567788888888876643 2 366666666666666665 56999999999999998
Q ss_pred CcchhHHh-------------------hHHHHHHHHHHHHhCCCcCCCccc
Q 044945 185 NTGAYVIL-------------------INEALKDLLERMEQEGYVPDTKEV 216 (296)
Q Consensus 185 ~~~~y~~l-------------------~~~~a~~l~~~M~~~g~~p~~~t~ 216 (296)
+..+|..+ .+++|.+.|++-.+. .|+...+
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 87666665 267777777665543 5665444
No 194
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=70.04 E-value=25 Score=27.69 Aligned_cols=31 Identities=10% Similarity=-0.144 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 044945 153 NVWLTLLSACRV----HRNVELAEKVADMILMIEP 183 (296)
Q Consensus 153 ~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~~~ 183 (296)
..+..|=..|.. .++.++|...|++..+.++
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 334444444444 5566666666666655443
No 195
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=69.97 E-value=12 Score=36.02 Aligned_cols=103 Identities=7% Similarity=-0.053 Sum_probs=70.9
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHc-C-CccChhhhhhhhcc--------------------CCCHHHHHHHHHHHH
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMA-K-IKARHAPFSRIMHA--------------------GSTENVWLTLLSACR 163 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~-g-~~pd~~ty~~li~~--------------------~p~~~~~~~Li~~~~ 163 (296)
.|-..+...-+.|..+.|.++|.+-.+. + ..+..+...+.+.- .-+...|...++...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5888888888888999999999988775 2 23444444444321 335667788888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---CcchhHHh--------hHHHHHHHHHHHHhCC
Q 044945 164 VHRNVELAEKVADMILMIEPN---NTGAYVIL--------INEALKDLLERMEQEG 208 (296)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~---~~~~y~~l--------~~~~a~~l~~~M~~~g 208 (296)
..|+.+.|..+|+...+..++ ....|... ..+.+.++.++|.+.-
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 899999999999988776542 22334443 3466777888877653
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=68.39 E-value=18 Score=27.74 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=55.0
Q ss_pred CceeeHHHHHHHHhccC---ChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 102 DYAISRNSITAGCGQNG---PFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 102 p~~~t~n~li~~~~~~g---~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
++.-+.--+-.++++.+ +++++..+|++..+.. .|+ ......|+.-+ +|.+.|++++|.+.++.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~----------~~rd~lY~LAv-~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKE----------EQRDYVFYLAV-GNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHH----------HHHHHHHHHHH-HHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Ccc----------chHHHHHHHHH-HHHHccCHHHHHHHHHHH
Confidence 44456666667888888 6679999999988864 121 01123344443 669999999999999999
Q ss_pred HhcCCCCcchhH
Q 044945 179 LMIEPNNTGAYV 190 (296)
Q Consensus 179 ~~~~~~~~~~y~ 190 (296)
.+.+|.|.....
T Consensus 98 L~ieP~n~QA~~ 109 (152)
T 1pc2_A 98 LQTEPQNNQAKE 109 (152)
T ss_dssp HHHCTTCHHHHH
T ss_pred HhcCCCCHHHHH
Confidence 999997764433
No 197
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=67.94 E-value=6.2 Score=38.18 Aligned_cols=70 Identities=4% Similarity=-0.133 Sum_probs=48.2
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPN 184 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (296)
.-|...+.-....|+.+.|..+|+.-....-.+ .-....|...+..=.+.|..+.+.++.+++.+..|.
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~-----------~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDS-----------HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST-----------THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345555555555666666666666544332100 114578999999999999999999999999988775
Q ss_pred C
Q 044945 185 N 185 (296)
Q Consensus 185 ~ 185 (296)
+
T Consensus 574 ~ 574 (679)
T 4e6h_A 574 V 574 (679)
T ss_dssp C
T ss_pred C
Confidence 4
No 198
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=66.92 E-value=39 Score=28.98 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=67.8
Q ss_pred eeeHHHHHHHHhc-----cCChhHHHHHHHHHHHcCCccChhhhhhhhccCC--CHHHHHHHHHHHHhc-CCHHHHHHHH
Q 044945 104 AISRNSITAGCGQ-----NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGS--TENVWLTLLSACRVH-RNVELAEKVA 175 (296)
Q Consensus 104 ~~t~n~li~~~~~-----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p--~~~~~~~Li~~~~~~-g~~~~A~~~~ 175 (296)
...|++|-.-|.+ .|+.++|.+.|++-.+-+ | +..++...-+.+++. |+.++|.+.+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---------------P~~~id~~v~YA~~l~~~~gd~~~a~~~L 263 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---------------SAHDPDHHITYADALCIPLNNRAGFDEAL 263 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---------------CTTCSHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---------------CCCCchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4689999999999 499999999999987742 4 367777788888885 9999999999
Q ss_pred HHHHhcCC---CCcchhHHhhHHHHHHHHHHHH
Q 044945 176 DMILMIEP---NNTGAYVILINEALKDLLERME 205 (296)
Q Consensus 176 ~~m~~~~~---~~~~~y~~l~~~~a~~l~~~M~ 205 (296)
++-....| |+....+.+.-++|..++.+..
T Consensus 264 ~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 264 DRALAIDPESVPHNKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence 99987654 3345556667777777776543
No 199
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=66.19 E-value=24 Score=29.24 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=63.4
Q ss_pred ccccccCCH---HHHHhhccc---CCcccCCCc--eeeHHHHHHHHhccCChhHHHHHHHHHHHc-CCccChhhhhhhhc
Q 044945 77 LRPSRSGSV---RKVFEIMAV---RDFLEYCDY--AISRNSITAGCGQNGPFDEGLKFFGQMLMA-KIKARHAPFSRIMH 147 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~---~~~~~~~p~--~~t~n~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~li~ 147 (296)
..|...|+. ...|++..+ ... .+. ..+|+.+-..|.+.|+.++|++.|++..+. ...|+..
T Consensus 123 ~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~------- 192 (293)
T 2qfc_A 123 AYVLKKVDYEYCILELKKLLNQQLTGI---DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE------- 192 (293)
T ss_dssp HHHHTSSCHHHHHHHHHHHHTTCCCSS---CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-------
Confidence 456677777 444444322 111 111 247899999999999999999999998631 1111100
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 148 AGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 148 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.....+|+-+-..|.+.|++++|...+++..+.
T Consensus 193 -~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 193 -EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 012357888888999999999999999987653
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=61.95 E-value=25 Score=31.27 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=53.2
Q ss_pred ceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044945 103 YAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIE 182 (296)
Q Consensus 103 ~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 182 (296)
+..+|.++-..+...|++++|.+.+++....+ |+...|..+=..+.-.|++++|...+++-....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---------------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE---------------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 44677777666777799999999999988864 455566666677888999999999999888877
Q ss_pred CC
Q 044945 183 PN 184 (296)
Q Consensus 183 ~~ 184 (296)
|.
T Consensus 341 P~ 342 (372)
T 3ly7_A 341 PG 342 (372)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 201
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=61.01 E-value=41 Score=28.60 Aligned_cols=122 Identities=10% Similarity=-0.043 Sum_probs=74.0
Q ss_pred ccccccCCH---HHHHhhccc----CCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccC
Q 044945 77 LRPSRSGSV---RKVFEIMAV----RDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAG 149 (296)
Q Consensus 77 ~~y~k~g~~---~~~f~~M~~----~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 149 (296)
..|...|++ .+.+++-.. .+. ......+++.+-..|...|++++|.+.+++..+..-..... ..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-------~~ 131 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDV--WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-------QL 131 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-------TS
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-------cC
Confidence 456667777 555554432 121 00011335667788999999999999999976521100000 00
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C---cchhHHh--------hHHHHHHHHHHHHhC
Q 044945 150 S-TENVWLTLLSACRVHRNVELAEKVADMILMIEPN--N---TGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 150 p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
| ....+..+-..|...|++++|...+++..+..+. + ..+|..+ ..++|...+++....
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2345666777889999999999999988765432 1 1223333 568888888776543
No 202
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.78 E-value=21 Score=31.18 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=47.4
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCcc-Chhhhhhhhcc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKA-RHAPFSRIMHA--GSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~--~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
..+.+.|+.++|++.|.+..+..-.. +.......... ..-...+..|...|.+.|++++|...+....+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678899999999999998753322 11111111111 111234678899999999999999999987654
No 203
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=59.35 E-value=31 Score=30.59 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=47.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044945 108 NSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILM 180 (296)
Q Consensus 108 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 180 (296)
..++..+...|+.++|...+....... +-+...|-.||.+|.+.|+..+|.+.|+...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH--------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777888888887777765532 34778999999999999999999999998864
No 204
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=56.08 E-value=34 Score=24.42 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.|+..+..+-+.+|.|.+++.-|.++|+.++.+.......|..+
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 68999999999999999999999999999987654334445543
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=54.11 E-value=58 Score=23.54 Aligned_cols=56 Identities=5% Similarity=-0.047 Sum_probs=33.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 044945 110 ITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRV----HRNVELAEKVADMILMI 181 (296)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~ 181 (296)
|=..|.+.+.+++|++.|++-.+.| +...+..|=..|.. .++.++|...|++-.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g----------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN----------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 3334444455566666666555543 44455555555665 67888888888877665
No 206
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=52.42 E-value=59 Score=27.74 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=63.9
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChh--HHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFD--EGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACR 163 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~--~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~ 163 (296)
.++++.+.+.+- -|-.+|+---..+.+.|..+ ++++.+++|.+... -|...|+---..+.
T Consensus 130 L~~~~~~l~~~p----kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~--------------~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 130 FDILEAMLSSDP----KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL--------------KNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC--------------CCHHHHHHHHHHHH
Confidence 556666654332 11277877777777778887 99999999987653 46666765555556
Q ss_pred hcCC------HHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 164 VHRN------VELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 164 ~~g~------~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
+.|+ ++++...+++..+..|.|...|+-+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 6665 8899999999998889898888754
No 207
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=49.23 E-value=1.4e+02 Score=26.46 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCcchhHHh------------hHHHHHHHHHHHH
Q 044945 154 VWLTLLSACRVHR---NVELAEKVADMILMIEPNNTGAYVIL------------INEALKDLLERME 205 (296)
Q Consensus 154 ~~~~Li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~y~~l------------~~~~a~~l~~~M~ 205 (296)
.+..|=..|.+.| +.++|...|++..+.++.+...+..+ ..++|.++|++-.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 6777777888888 88888888888887776665543333 4567777776654
No 208
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=49.02 E-value=50 Score=23.54 Aligned_cols=27 Identities=15% Similarity=0.072 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 150 STENVWLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 150 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
||.+.|-+| +=.|.|.-+.++.-+..+
T Consensus 69 pdlepw~AL--ce~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 69 PDLEPWLAL--CEYRLGLGSALESRLNRL 95 (116)
T ss_dssp GGGHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred chHHHHHHH--HHHhcccHHHHHHHHHHH
Confidence 444444443 222444444444444333
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=48.58 E-value=41 Score=31.48 Aligned_cols=147 Identities=10% Similarity=-0.040 Sum_probs=0.0
Q ss_pred cccccCCCCeeehHH---HHHhhccc---------HHHHHHHHHHhHhcccCCCccccHHHHHhcCCCccCCceehhhhh
Q 044945 4 NIVILERNENVELSN---GLAGCNEF---------MDKANGITDRFEERAVSIGHYADLDGISDQLPSSSGGRQVDIHFD 71 (296)
Q Consensus 4 ~~~~~~~pd~vs~n~---~~~~~~~~---------~~~A~~~f~~M~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~ 71 (296)
.++.+..-+...||. .+.+.++. +++|++.++++.+.... .+-.
T Consensus 54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------------------------~y~a 109 (567)
T 1dce_A 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------------------------SYGT 109 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------------------------CHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------------------------CHHH
Q ss_pred cccccccccccC--CH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccC-ChhHHHHHHHHHHHcCCccChhhhhhh
Q 044945 72 GGVDGLRPSRSG--SV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNG-PFDEGLKFFGQMLMAKIKARHAPFSRI 145 (296)
Q Consensus 72 ~~~~i~~y~k~g--~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~ty~~l 145 (296)
|.----.+.+.| ++ .+.++.+-+.+. -|-..|+---..+.+.| ..+++++.+.++.+...
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~----~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---------- 175 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADE----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---------- 175 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----------
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhcc----ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----------
Q ss_pred hccCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 146 MHAGSTENVWLTLLSACRVH--------------RNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 146 i~~~p~~~~~~~Li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
-|...|+-.-..+.+. +.+++|.+.+++..+..|.|..+|.-+
T Consensus 176 ----~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 176 ----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp ----CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred ----CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
No 210
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=48.50 E-value=1.4e+02 Score=26.60 Aligned_cols=31 Identities=13% Similarity=-0.033 Sum_probs=26.6
Q ss_pred eeHHHHHHHHhccC---ChhHHHHHHHHHHHcCC
Q 044945 105 ISRNSITAGCGQNG---PFDEGLKFFGQMLMAKI 135 (296)
Q Consensus 105 ~t~n~li~~~~~~g---~~~~A~~l~~~M~~~g~ 135 (296)
..+..|-..|.+.| +.++|++.|++-.+.|-
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence 47888888888899 89999999999888774
No 211
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.48 E-value=47 Score=28.75 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=52.7
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
-++..|...|-..|+.++|..++.+....-...+.. .-...+|..+...|...|++++|..++++....
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK--------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS--------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 367788899999999999999999876532111110 123467999999999999999999999987653
No 212
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=45.81 E-value=1e+02 Score=23.87 Aligned_cols=78 Identities=5% Similarity=-0.103 Sum_probs=53.1
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhc----cCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQ----NGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSA 161 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~ 161 (296)
.+.|++-.+.+. ..++..|=..|.. .++.++|++.|++-.+.|... .+...+..|=..
T Consensus 73 ~~~~~~A~~~g~------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 73 RQLAEKAVEAGS------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------AAVDAQMLLGLI 134 (212)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------chHHHHHHHHHH
Confidence 666666555443 2456666666666 778888888888776654210 025667777777
Q ss_pred HHh----cCCHHHHHHHHHHHHhc
Q 044945 162 CRV----HRNVELAEKVADMILMI 181 (296)
Q Consensus 162 ~~~----~g~~~~A~~~~~~m~~~ 181 (296)
|.. .++.++|...|++-.+.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHc
Confidence 777 78999999999998776
No 213
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=44.90 E-value=1.1e+02 Score=27.15 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhHhc
Q 044945 27 MDKANGITDRFEER 40 (296)
Q Consensus 27 ~~~A~~~f~~M~~~ 40 (296)
.++|.+.|.+-.+.
T Consensus 59 ~~~A~~~~~~a~~~ 72 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ 72 (490)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666655544
No 214
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.17 E-value=37 Score=24.97 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh----------hHHHHHHHHHHHHhCCCcCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL----------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l----------~~~~a~~l~~~M~~~g~~p~ 212 (296)
..+.+|.-|...|++++|.+.++++..-.-.....+..+ ..+.+.+++..+...|+.+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 467899999999999999999999842100011222222 12445677777777776543
No 215
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=43.68 E-value=81 Score=27.58 Aligned_cols=89 Identities=10% Similarity=-0.005 Sum_probs=61.7
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChh--------HHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHH
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFD--------EGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLT 157 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~--------~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~ 157 (296)
.++++.+.+.+- -|-..|+---..+.+.|..+ ++++.+.++.+... -|...|+-
T Consensus 145 L~~~~k~L~~dp----kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--------------~N~SAW~~ 206 (349)
T 3q7a_A 145 IEYIHGSLLPDP----KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--------------RNNSAWGW 206 (349)
T ss_dssp HHHHHHHTSSCT----TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT--------------TCHHHHHH
T ss_pred HHHHHHHHHhCC----CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC--------------CCHHHHHH
Confidence 556666655443 12266665444444444555 88888888877543 47777887
Q ss_pred HHHHHHhcCC-------HHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 158 LLSACRVHRN-------VELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 158 Li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.-..+.+.|+ ++++...+++..+..|.|...|+-+
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Yl 248 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYL 248 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7777777776 7899999999999899999888854
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=43.63 E-value=1.5e+02 Score=25.52 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=64.0
Q ss_pred eeHHHHHHHHhccCC-hhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhc--------------CCHH
Q 044945 105 ISRNSITAGCGQNGP-FDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVH--------------RNVE 169 (296)
Q Consensus 105 ~t~n~li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~--------------g~~~ 169 (296)
..|+----.+.+.|. .+++++.+.++.+... -|...|+-.-..+.+. +.++
T Consensus 145 ~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--------------~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~ 210 (331)
T 3dss_A 145 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 210 (331)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--------------CCHHHHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHhhhccccccccccchHHHH
Confidence 666665555566666 4777777777776542 4666676655555544 5688
Q ss_pred HHHHHHHHHHhcCCCCcchhHHh-------------------hHHHHHHHHHHHHhCCCcCCC
Q 044945 170 LAEKVADMILMIEPNNTGAYVIL-------------------INEALKDLLERMEQEGYVPDT 213 (296)
Q Consensus 170 ~A~~~~~~m~~~~~~~~~~y~~l-------------------~~~~a~~l~~~M~~~g~~p~~ 213 (296)
++...++......|.|..+|+-+ .++++.+.+.++.+. .||.
T Consensus 211 eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 211 KELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 99999999999999999999855 356666677766654 4554
No 217
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=42.76 E-value=49 Score=23.56 Aligned_cols=31 Identities=6% Similarity=-0.127 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
.||.+.|-+| +=.|.|.-+.++.-+..+...
T Consensus 67 ~pdlepw~AL--ce~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 67 WPALEPWFAL--CEWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp CGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTC
T ss_pred CchHHHHHHH--HHHhcccHHHHHHHHHHHHhC
Confidence 4566666555 223556655555555555443
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=40.50 E-value=1.2e+02 Score=23.10 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchh-------HHh-hHHHHHHHHHHHHhCCCc
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAY-------VIL-INEALKDLLERMEQEGYV 210 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y-------~~l-~~~~a~~l~~~M~~~g~~ 210 (296)
..+....+.-++.+...|+-++-.++...+....++++..- .-+ ...+|.+++.+--+.|++
T Consensus 88 n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 88 NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 45667777888888999999999988888655443333211 111 456777777777777764
No 219
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=39.19 E-value=1.7e+02 Score=25.99 Aligned_cols=104 Identities=11% Similarity=-0.019 Sum_probs=69.5
Q ss_pred CCH---HHHHhhcccCCcccCCCceeeHHHHHHHHhccC---ChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHH
Q 044945 83 GSV---RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNG---PFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWL 156 (296)
Q Consensus 83 g~~---~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g---~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~ 156 (296)
++. ...|++..+.+. ...+..|-..|.+.| +.++|.+.|++-.+.| +...+.
T Consensus 310 ~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----------------~~~a~~ 367 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQGD------ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----------------EKAAQF 367 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----------------CHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----------------CHHHHH
Confidence 555 555655555433 256677777777766 7889999999987753 445566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchhHHh------------hHHHHHHHHHHHHhCCCc
Q 044945 157 TLLSACRV----HRNVELAEKVADMILMIEPNNTGAYVIL------------INEALKDLLERMEQEGYV 210 (296)
Q Consensus 157 ~Li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~y~~l------------~~~~a~~l~~~M~~~g~~ 210 (296)
.|=..|.. .++.++|...|++..+.+ +...+..+ ..++|...|++-.+.|..
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 66667777 788888888888877653 33333333 467788888777776643
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=38.36 E-value=62 Score=30.84 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=24.0
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHH
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLM 132 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~ 132 (296)
..|..|-..+.+.|+++.|.+.|..+..
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 5699999999999999999999988743
No 221
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=38.24 E-value=84 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh
Q 044945 149 GSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL 192 (296)
Q Consensus 149 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l 192 (296)
.|+..+..+-+.+|.+.+++.-|.++|+.++.+..+....|..+
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 79999999999999999999999999999987754334445543
No 222
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.99 E-value=51 Score=25.07 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh----------hHHHHHHHHHHHHhCCCcCC
Q 044945 154 VWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL----------INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 154 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l----------~~~~a~~l~~~M~~~g~~p~ 212 (296)
..+.+|.-|...|++++|.+.++++..-.-.....+.++ ..+.+.+|+..+...|+.+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 467899999999999999999999842100011222222 13446678888877776553
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=35.03 E-value=93 Score=27.52 Aligned_cols=103 Identities=9% Similarity=0.091 Sum_probs=68.3
Q ss_pred CceeeHHHHHHHHhcc--CC---hhHHHHHHHHHHHcCCccCh-hhhhh--hhc--------------------------
Q 044945 102 DYAISRNSITAGCGQN--GP---FDEGLKFFGQMLMAKIKARH-APFSR--IMH-------------------------- 147 (296)
Q Consensus 102 p~~~t~n~li~~~~~~--g~---~~~A~~l~~~M~~~g~~pd~-~ty~~--li~-------------------------- 147 (296)
.|.-.|...+.|.... +. ..+|..+|++-.+. .|+- ..|.. +..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3557788888776542 33 36899999988763 3441 11111 000
Q ss_pred ---cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHHhC
Q 044945 148 ---AGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVIL--------INEALKDLLERMEQE 207 (296)
Q Consensus 148 ---~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~~~ 207 (296)
...+..+|.++--.+...|++++|...+++....++ +...|..+ ..++|.+.+++=...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 055777888877777778999999999999998863 55555555 678888877765544
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=34.07 E-value=1.7e+02 Score=25.07 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC-CcchhHHh---------hHHHHHHHHHHHHhCCCc
Q 044945 152 ENVWLTLLSACRV-----HRNVELAEKVADMILMIEPN-NTGAYVIL---------INEALKDLLERMEQEGYV 210 (296)
Q Consensus 152 ~~~~~~Li~~~~~-----~g~~~~A~~~~~~m~~~~~~-~~~~y~~l---------~~~~a~~l~~~M~~~g~~ 210 (296)
-..|.+|-..|.+ -|+.++|+..|++-.+..|. +..++... ..+++.+.+++-......
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 5678888888998 49999999999999998885 46555555 468888888888887766
No 225
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=31.45 E-value=2.3e+02 Score=23.76 Aligned_cols=87 Identities=9% Similarity=0.068 Sum_probs=62.4
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchhHH
Q 044945 112 AGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEPNNTGAYVI 191 (296)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~y~~ 191 (296)
...-+.|.+++|++-..+-++.. +.|...=..|+..+|-.|+|+.|.+-++...+..|.-...-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 45667899999999888877764 3577777899999999999999999999988876643322222
Q ss_pred h-hHHHHHHHHHHHHhCCCcCC
Q 044945 192 L-INEALKDLLERMEQEGYVPD 212 (296)
Q Consensus 192 l-~~~~a~~l~~~M~~~g~~p~ 212 (296)
. ..-.|+..-.+....+-.|.
T Consensus 71 yr~lI~aE~~R~~vfaG~~~P~ 92 (273)
T 1zbp_A 71 LRHLVKAAQARKDFAQGAATAK 92 (273)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCC
Confidence 2 33344445555666666665
No 226
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=31.04 E-value=2.6e+02 Score=24.23 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhh-h---------------------hhhcc-CCCHHHHHHHHHHHH
Q 044945 107 RNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPF-S---------------------RIMHA-GSTENVWLTLLSACR 163 (296)
Q Consensus 107 ~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty-~---------------------~li~~-~p~~~~~~~Li~~~~ 163 (296)
|+.+-....+.+..++|++++.++.... |+..|- + .++.. +-+..+|+----.+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444444455566678888888887632 433321 1 11111 345667777666666
Q ss_pred hc-C-CHHHHHHHHHHHHhcCCCCcchhHHh--------hHH--------HHHHHHHHHHhC
Q 044945 164 VH-R-NVELAEKVADMILMIEPNNTGAYVIL--------INE--------ALKDLLERMEQE 207 (296)
Q Consensus 164 ~~-g-~~~~A~~~~~~m~~~~~~~~~~y~~l--------~~~--------~a~~l~~~M~~~ 207 (296)
+. + +++++..+++.+.+..|.|-.+|+-- ..+ ++.+..+++.+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 65 6 78888888888888777777777765 222 666777777764
No 227
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=30.88 E-value=2.4e+02 Score=23.77 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=48.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcc
Q 044945 110 ITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHR--NVELAEKVADMILMIEPNNTG 187 (296)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~ 187 (296)
+.....+....++|++++..+.... | -+...||.-=..+...| +++++..+++.+.+..|.+..
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P------------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~ 104 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--A------------SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ 104 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--T------------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--c------------HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH
Confidence 3333344445567888887776632 2 34566887777777778 999999999999998888877
Q ss_pred hhHHh
Q 044945 188 AYVIL 192 (296)
Q Consensus 188 ~y~~l 192 (296)
+|+--
T Consensus 105 aW~~R 109 (306)
T 3dra_A 105 IWNYR 109 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 228
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.44 E-value=13 Score=23.54 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=19.6
Q ss_pred cchhhHHHHHhhhhcceEEEec
Q 044945 261 RGLRHGNKVVSKIVHREMIVRD 282 (296)
Q Consensus 261 g~~~~A~~~f~~m~~r~~~~~~ 282 (296)
-+++.|.+.|.++..+|-||+|
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 3789999999999999989887
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=28.67 E-value=56 Score=24.09 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=47.5
Q ss_pred eHHHHHHHHhccCChhH---HHHHHHHHHHcCCccChhhhhhhhccCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 106 SRNSITAGCGQNGPFDE---GLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWL-TLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~---A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~-~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
+---+-.++.+....++ +..++.+..+.+- |+ +..-|. .|=-||.|.|++++|.+.++.+.+.
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~------------~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KE------------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HH------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cc------------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33334456677776665 8888888766531 10 122222 2223889999999999999999999
Q ss_pred CCCCcchhH
Q 044945 182 EPNNTGAYV 190 (296)
Q Consensus 182 ~~~~~~~y~ 190 (296)
+|.|.....
T Consensus 104 eP~n~QA~~ 112 (126)
T 1nzn_A 104 EPQNNQAKE 112 (126)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 997764433
No 230
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=28.49 E-value=88 Score=22.31 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhc
Q 044945 86 RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMH 147 (296)
Q Consensus 86 ~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 147 (296)
++-...+-..|+ .|+.....+.+.+|-|.+++.-|.++|+-.+.+ +.+...+|.-++.
T Consensus 30 rrglN~l~~~Dl---VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 30 RKGMNTLVGYDL---VPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHTTSSB---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHhcccc---CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 556666677898 999999999999999999999999999887653 3333334544443
No 231
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=28.33 E-value=1.3e+02 Score=21.67 Aligned_cols=34 Identities=6% Similarity=-0.052 Sum_probs=30.3
Q ss_pred CceeeHHHHHHHHhccCCh---hHHHHHHHHHHHcCC
Q 044945 102 DYAISRNSITAGCGQNGPF---DEGLKFFGQMLMAKI 135 (296)
Q Consensus 102 p~~~t~n~li~~~~~~g~~---~~A~~l~~~M~~~g~ 135 (296)
|+.++=+-+++.+.+++.+ ++|.++-+.|.+.|+
T Consensus 35 ~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 35 KKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp SSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred cceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 7889999999999998754 799999999999886
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=25.75 E-value=1.4e+02 Score=26.10 Aligned_cols=111 Identities=9% Similarity=0.044 Sum_probs=71.1
Q ss_pred eeHHHHHHHH---hccCChhHHHHHHHHHHH--cC-CccChhhhhhhhcc------CCCHHHHHHHHHHHHhcCCHHHHH
Q 044945 105 ISRNSITAGC---GQNGPFDEGLKFFGQMLM--AK-IKARHAPFSRIMHA------GSTENVWLTLLSACRVHRNVELAE 172 (296)
Q Consensus 105 ~t~n~li~~~---~~~g~~~~A~~l~~~M~~--~g-~~pd~~ty~~li~~------~p~~~~~~~Li~~~~~~g~~~~A~ 172 (296)
.-|..++..- ...|+.++|.+.+.+... +| +-|+...+ ..+.. .--......++..+...|+.++|.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~-~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDF-QFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444554432 235788888888888766 34 22332111 11111 112234556788889999999999
Q ss_pred HHHHHHHhcCCCCcchhHHh--------hHHHHHHHHHHHH-----hCCCcCCCccc
Q 044945 173 KVADMILMIEPNNTGAYVIL--------INEALKDLLERME-----QEGYVPDTKEV 216 (296)
Q Consensus 173 ~~~~~m~~~~~~~~~~y~~l--------~~~~a~~l~~~M~-----~~g~~p~~~t~ 216 (296)
..++.+....|-+...|..+ ...+|.+.|++.. +.|+.|...+-
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999988888787777666 5577777776653 46999986554
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.14 E-value=1.9e+02 Score=22.57 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=39.0
Q ss_pred hccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044945 115 GQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMIL 179 (296)
Q Consensus 115 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 179 (296)
-+.|+++.|.++.+++ -+...|..|=+..-+.|+++-|+++|....
T Consensus 16 L~lg~l~~A~e~a~~l-------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------------------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4579999999998775 367789999999999999999999998764
No 234
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.65 E-value=3.4e+02 Score=23.99 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=52.8
Q ss_pred eHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044945 106 SRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMI 181 (296)
Q Consensus 106 t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 181 (296)
++.-+-.-|.+.|+.++|.+.|.++...-..+ ..-+..|-.+|..+...+++..|....++....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-----------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-----------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-----------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-----------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 67788899999999999999999998743222 234567778899999999999999999988653
No 235
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=22.98 E-value=2.9e+02 Score=24.91 Aligned_cols=24 Identities=8% Similarity=-0.154 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044945 155 WLTLLSACRVHRNVELAEKVADMI 178 (296)
Q Consensus 155 ~~~Li~~~~~~g~~~~A~~~~~~m 178 (296)
|...++...+.|+.+.|..+|+..
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455555555555555555554
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=22.61 E-value=2.6e+02 Score=21.29 Aligned_cols=65 Identities=11% Similarity=-0.068 Sum_probs=51.8
Q ss_pred eeHHHHHHHHhccCChhHHHHHHHHHHHcCCccChhhhhhhhccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 044945 105 ISRNSITAGCGQNGPFDEGLKFFGQMLMAKIKARHAPFSRIMHAGSTENVWLTLLSACRVHRNVELAEKVADMILMIEP 183 (296)
Q Consensus 105 ~t~n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 183 (296)
--.+.-++.....|+-|+-.++..+..... +|+....-.+-++|.|-|+..+|.+++.+.-+++.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~--------------~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNN--------------EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C--------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccC--------------CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 446777888899999999999888853321 46777777888999999999999999998877654
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=20.04 E-value=3.9e+02 Score=22.38 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=69.1
Q ss_pred ccccCCH----HHHHhhcccCCcccCCCceeeHHHHHHHHhccCChhHHHHHHHHHHHc--CCccChhhhhhhhcc----
Q 044945 79 PSRSGSV----RKVFEIMAVRDFLEYCDYAISRNSITAGCGQNGPFDEGLKFFGQMLMA--KIKARHAPFSRIMHA---- 148 (296)
Q Consensus 79 y~k~g~~----~~~f~~M~~~~~~~~~p~~~t~n~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~li~~---- 148 (296)
.-+.|++ ..+-++.+.. .-|.-.--.++.-+|-.|++++|.+=++...+. ...|-..+|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-----P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH
Confidence 4566667 4444444442 124466788999999999999999988887663 345667788888888
Q ss_pred -------------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 044945 149 -------------GSTENVWLTLLSACR--VHRNVELAEKVADMILMIEPNN 185 (296)
Q Consensus 149 -------------~p~~~~~~~Li~~~~--~~g~~~~A~~~~~~m~~~~~~~ 185 (296)
.....-...|+.+.. ..|+.++|..+-++..+..|..
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 112224445566555 4599999999888887654433
Done!