BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044946
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 206 LRQLVLRVLDMGFTTDS-RMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTA 264
++Q++L + D+G + F+ A+ + ++ S FSK + +M+R A
Sbjct: 188 IKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKA 247
Query: 265 PRLLSASEERLKSGLDFFLKKIEFG----KAVLVRMPCCMMYSIE 305
P LL+ S ERL + L FF K++E + ++VR+P + S+E
Sbjct: 248 PFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 292
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 248 RSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFG----KAVLVRMPCCMMYS 303
+S FSK + M++ AP LLS S ERL + L FF K++E + ++VR+P + S
Sbjct: 226 QSKNFSKTDIARMVKNAPFLLSFSVERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGS 285
Query: 304 IE 305
+E
Sbjct: 286 LE 287
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 248 RSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFG----KAVLVRMPCCMMYS 303
+S FSK + M++ AP LLS S ERL + L FF K++E + ++VR+P + S
Sbjct: 223 QSKNFSKTDIACMVKNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGS 282
Query: 304 IE 305
+E
Sbjct: 283 LE 284
>sp|B0KBQ5|PURL_THEP3 Phosphoribosylformylglycinamidine synthase 2 OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=purL PE=3
SV=1
Length = 733
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 160 DLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFT 219
D+++I E G + EYLK C M+ + P++ + +L++LVL+++D G
Sbjct: 566 DVIIILGENKGEIGGSEYLKVC------FGMVKGQPPQIDLEEEKRLQELVLKLIDKGLI 619
Query: 220 TDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAP--RLLSASEERLK 276
S G A L E K S S E IE+ +P L++ S E+++
Sbjct: 620 NSSHDISEGGFAAA-LVESAISGKKGAKISLQTSLREDIELFSESPPRALITVSPEKVE 677
>sp|B8D8D5|MTLD_BUCA5 Mannitol-1-phosphate 5-dehydrogenase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=mtlD PE=3 SV=1
Length = 385
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 108/248 (43%), Gaps = 27/248 (10%)
Query: 92 TILFADVNKTLKPKIAYFQQ--LGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNED 149
+++F+DVN+ + I Y ++ + ++GS+ K ++ +K++ A +SN+ +
Sbjct: 26 SVIFSDVNQNIVDAINYNREYFVKIIGSNQNKTVN------------IKRVSAINSNDSN 73
Query: 150 LIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLK---- 205
+ ++I + + P L I + + GI+ + L + C N +K
Sbjct: 74 IKKIISSVDLITTAVGPTA---LEKIALIITQGIIFKIKNQFTKPLNIIACENKIKSSSF 130
Query: 206 LRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAP 265
L+Q+VL+ L + + ++ +D + + K DLF + KE + + +
Sbjct: 131 LKQVVLKNLPIKYHDYLNKYIGFIDCSIDTIIPSINNKDDLFLTVEEFKEWIVNINQFKG 190
Query: 266 RLLSASEERLKSGLDFFLKKIEF----GKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVR 321
+L + + + LD F+++ F G A+ + Y I ++ V+VR
Sbjct: 191 AVLKIVDMKFSNNLDAFIERKLFTLNTGHAIAAYLGLIKNYKTIQDAISDKKIR--VIVR 248
Query: 322 RMLKKDWS 329
+++ S
Sbjct: 249 SAMEESGS 256
>sp|Q2JRL7|PYRD_SYNJA Dihydroorotate dehydrogenase (quinone) OS=Synechococcus sp. (strain
JA-3-3Ab) GN=pyrD PE=3 SV=1
Length = 376
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 153 VIRRMSWDLVVIDPE--KSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKL 206
V+R + + + DPE K GLLR +E+L + +Q + +L L RLFC+ D +L
Sbjct: 7 VLRPLIFSGLRADPETVKVGLLRALEWLDA-----TQATGILALLERLFCYRDPRL 57
>sp|Q5L1E5|MTNK_GEOKA Methylthioribose kinase OS=Geobacillus kaustophilus (strain HTA426)
GN=mtnK PE=3 SV=1
Length = 396
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 79 SDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNL 126
+D + +HT + AD K + P+ A++ G +G DLG+F +NL
Sbjct: 226 ADVLLHGDLHTGSIFVSADETKVIDPEFAFY---GPIGFDLGQFFANL 270
>sp|Q8RBK5|PURL_THETN Phosphoribosylformylglycinamidine synthase 2 OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=purL PE=3 SV=1
Length = 733
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 160 DLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFT 219
D+++I E G + EYLK C M+ + P++ + +L++LVL+++D G
Sbjct: 566 DVIIILGENKGEIGGSEYLKVC------FGMVKGQPPQIDLEKEKRLQELVLKLIDEGLI 619
Query: 220 TDSRMFVHG 228
S G
Sbjct: 620 NSSHDISEG 628
>sp|B8D892|MTLD_BUCAT Mannitol-1-phosphate 5-dehydrogenase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=mtlD PE=3 SV=1
Length = 385
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 107/248 (43%), Gaps = 27/248 (10%)
Query: 92 TILFADVNKTLKPKIAYFQQ--LGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNED 149
+++F+DVN+ + I Y ++ + ++GS+ K ++ +K++ A +SN+ +
Sbjct: 26 SVIFSDVNQNIVDAINYNREYFVKIIGSNQNKTVN------------IKRVSAINSNDSN 73
Query: 150 LIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLK---- 205
+ ++I + + P L I + + GI+ + L + C N +K
Sbjct: 74 IKKIISSVDLITTAVGPTA---LEKIALIITQGIIFKIKNQFTKPLNIIACENKIKSSSF 130
Query: 206 LRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAP 265
L+Q+VL+ L + + ++ +D + + K DLF + KE + + +
Sbjct: 131 LKQVVLKNLPIKYHDYLNKYIGFIDCSIDTIIPSINNKDDLFLTVEEFKEWIVNINQFKG 190
Query: 266 RLLSASEERLKSGLDFFLKKIEF----GKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVR 321
+ + + + LD F+++ F G A+ + Y I ++ V+VR
Sbjct: 191 AVPKIVDMKFSNNLDAFIERKLFTLNTGHAIAAYLGLIKNYKTIQDAISDKKIR--VIVR 248
Query: 322 RMLKKDWS 329
+++ S
Sbjct: 249 SAMEESGS 256
>sp|B0K3Q4|PURL_THEPX Phosphoribosylformylglycinamidine synthase 2 OS=Thermoanaerobacter
sp. (strain X514) GN=purL PE=3 SV=1
Length = 733
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 160 DLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFT 219
D+++I E G + EYLK C M+ + P++ + +L++LVL++++ G
Sbjct: 566 DVIIILGENKGEIGGSEYLKVC------FGMVKGQPPQIDLEEEKRLQELVLKLIEEGLI 619
Query: 220 TDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAP--RLLSASEERLK 276
S G A L E K S S E +E+ +P L++ S E+++
Sbjct: 620 NSSHDISEGGFAAA-LVESAISGKKGAKISLQTSLREDVELFSESPPRALITVSPEKVE 677
>sp|O59810|VGL1_SCHPO Vigilin 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vgl1 PE=1 SV=2
Length = 1291
Score = 32.7 bits (73), Expect = 4.0, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 22 FSSVSKTPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDT 81
FS+ S+ +T S L+ + ET + ++ L NQ R+ + KP +V++ + +V +
Sbjct: 139 FSASSRASSTKST-LSSVKETDFVTETLILSPDNQAPRMSFVGKPNSVAEIVRTVMHQTS 197
Query: 82 ---HIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPC-VEIL 137
++ A TK T F KT K A Q L L+G E K +PC V ++
Sbjct: 198 TRINVSTASKTKNTT-FLIQGKTSAVKAARRQILKLIGRR--------ETKTMPCPVFVV 248
Query: 138 KKILAEDSNNEDLIRVIRRMS 158
I+ +N ++L ++ R S
Sbjct: 249 GAIIG--TNGQNLKSIMDRTS 267
>sp|P57634|MTLD_BUCAI Mannitol-1-phosphate 5-dehydrogenase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mtlD PE=3 SV=1
Length = 385
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 106/248 (42%), Gaps = 27/248 (10%)
Query: 92 TILFADVNKTLKPKIAYFQQ--LGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNED 149
+++F+DVN+ + I Y ++ + ++GS+ K ++ +K++ A +SN+ +
Sbjct: 26 SVIFSDVNQNIVDAINYNREYFVKIIGSNQNKTVN------------IKRVSAINSNDSN 73
Query: 150 LIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLK---- 205
+ ++I + + P L I + + GI+ + L + C N +K
Sbjct: 74 IKKIISSVDLITTAVGPTA---LEKIALIITQGIIFKIKNQFTKPLNIIACENKIKSSSF 130
Query: 206 LRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAP 265
L+Q+VL+ L + + ++ +D + K DLF + KE + + +
Sbjct: 131 LKQVVLKNLPIKYHDYLNKYIGFIDCSIDTIIPAINNKDDLFLTVEEFKEWIVNINQFKG 190
Query: 266 RLLSASEERLKSGLDFFLKKIEF----GKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVR 321
+ + + + LD F+++ F G A+ + Y I ++ V+VR
Sbjct: 191 AVPKIVDMKFSNNLDAFIERKLFTLNTGHAIAAYLGLIKNYKTIQDAISDKKIR--VIVR 248
Query: 322 RMLKKDWS 329
+++ S
Sbjct: 249 SAMEESGS 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,676,092
Number of Sequences: 539616
Number of extensions: 4958741
Number of successful extensions: 15714
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15697
Number of HSP's gapped (non-prelim): 32
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)