Query 044946
Match_columns 365
No_of_seqs 195 out of 1189
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 14:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 4.4E-52 1.5E-56 400.2 19.4 303 28-347 15-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 6.2E-46 2.1E-50 346.1 12.9 249 33-352 6-262 (270)
3 4fp9_B Mterf domain-containing 100.0 2.5E-36 8.4E-41 287.0 16.2 211 65-352 45-266 (335)
4 3mva_O Transcription terminati 100.0 3.4E-35 1.2E-39 282.5 18.2 287 4-305 23-333 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 6.9E-31 2.4E-35 244.4 13.1 176 35-284 44-224 (270)
6 4fp9_B Mterf domain-containing 99.9 6E-24 2.1E-28 201.9 15.8 177 36-289 50-228 (335)
7 4fzv_B Mterf domain-containing 99.3 3.9E-11 1.3E-15 98.0 12.2 170 137-348 40-217 (239)
8 4fzv_B Mterf domain-containing 97.8 0.0002 6.7E-09 58.5 11.6 146 68-288 35-182 (239)
9 4ae4_A Ubiquitin-associated pr 91.8 1 3.6E-05 35.4 8.9 100 32-139 8-113 (118)
10 3ff5_A PEX14P, peroxisomal bio 90.2 0.74 2.5E-05 30.8 5.6 25 239-263 29-53 (54)
11 3ugm_A TAL effector avrbs3/PTH 84.9 2.5 8.7E-05 43.0 8.1 139 39-192 215-366 (1047)
12 2w84_A Peroxisomal membrane pr 83.9 2 6.7E-05 30.3 5.0 26 239-264 34-59 (70)
13 1oqy_A HHR23A, UV excision rep 83.6 2.3 8E-05 40.2 7.2 38 35-79 171-208 (368)
14 1oqy_A HHR23A, UV excision rep 81.8 1.4 4.9E-05 41.7 4.9 110 62-199 164-285 (368)
15 3ff5_A PEX14P, peroxisomal bio 81.6 1.4 4.9E-05 29.4 3.4 25 65-89 29-53 (54)
16 2w84_A Peroxisomal membrane pr 70.6 3.6 0.00012 29.0 3.2 25 65-89 34-58 (70)
17 1ify_A HHR23A, UV excision rep 69.8 12 0.00042 24.1 5.5 19 36-55 12-30 (49)
18 4ae4_A Ubiquitin-associated pr 69.2 20 0.00067 28.0 7.6 93 67-180 9-113 (118)
19 3dfg_A Xcrecx, regulatory prot 68.1 48 0.0016 27.0 10.5 73 174-265 87-160 (162)
20 1ify_A HHR23A, UV excision rep 65.2 9.2 0.00031 24.8 4.2 39 239-284 7-45 (49)
21 2ooa_A E3 ubiquitin-protein li 65.1 5.4 0.00018 26.3 2.9 24 239-262 10-33 (52)
22 3dfg_A Xcrecx, regulatory prot 63.0 21 0.00071 29.3 7.1 135 35-196 23-160 (162)
23 2cos_A Serine/threonine protei 61.5 6.8 0.00023 26.0 2.9 14 275-289 38-51 (54)
24 3idw_A Actin cytoskeleton-regu 61.0 11 0.00037 26.6 4.1 52 69-123 5-58 (72)
25 2g3q_A Protein YBL047C; endocy 60.4 7.5 0.00025 24.3 3.0 36 241-283 5-40 (43)
26 2knz_A Ubiquilin-4; cytoplasm, 59.4 9.9 0.00034 25.0 3.6 41 237-284 8-49 (53)
27 2oo9_A E3 ubiquitin-protein li 57.3 13 0.00045 23.7 3.6 24 239-262 3-26 (46)
28 3ugm_A TAL effector avrbs3/PTH 56.6 2.3 7.8E-05 43.3 -0.0 39 112-155 490-536 (1047)
29 1z96_A DNA-damage, UBA-domain 56.6 13 0.00045 22.5 3.6 24 241-264 5-28 (40)
30 2ekk_A UBA domain from E3 ubiq 56.2 15 0.00051 23.4 3.9 38 31-75 8-45 (47)
31 2d9s_A CBL E3 ubiquitin protei 55.2 13 0.00046 24.5 3.5 23 240-262 9-31 (53)
32 1veg_A NEDD8 ultimate buster-1 54.1 18 0.00061 26.4 4.5 40 241-287 30-69 (83)
33 2dak_A Ubiquitin carboxyl-term 53.6 22 0.00077 24.1 4.8 39 241-286 10-48 (63)
34 2lbc_A Ubiquitin carboxyl-term 52.4 51 0.0017 25.7 7.4 96 32-138 3-114 (126)
35 3idw_A Actin cytoskeleton-regu 52.2 25 0.00085 24.8 4.7 52 36-88 6-59 (72)
36 2juj_A E3 ubiquitin-protein li 50.8 18 0.00061 24.0 3.6 24 239-262 6-29 (56)
37 2jy5_A Ubiquilin-1; UBA, alter 50.6 13 0.00044 24.4 2.9 25 238-262 10-35 (52)
38 2dah_A Ubiquilin-3; UBA domain 49.9 30 0.001 22.8 4.7 39 101-139 8-47 (54)
39 2jy5_A Ubiquilin-1; UBA, alter 48.7 24 0.00081 23.1 4.1 21 67-87 13-34 (52)
40 1vg5_A RSGI RUH-014, rhomboid 48.1 14 0.00047 26.3 3.0 39 239-284 28-66 (73)
41 1wji_A Tudor domain containing 47.9 17 0.00057 24.9 3.3 38 241-285 10-47 (63)
42 1vg5_A RSGI RUH-014, rhomboid 47.3 39 0.0013 23.9 5.2 35 35-75 32-66 (73)
43 2knz_A Ubiquilin-4; cytoplasm, 46.0 14 0.00049 24.2 2.7 39 67-113 12-51 (53)
44 1wji_A Tudor domain containing 46.0 45 0.0015 22.7 5.3 38 32-75 9-46 (63)
45 1wgn_A UBAP1, ubiquitin associ 45.8 16 0.00054 25.0 2.8 38 32-75 19-56 (63)
46 2ef8_A C.ECOT38IS, putative tr 45.2 43 0.0015 23.1 5.5 56 240-295 11-75 (84)
47 2c35_A Human RPB4, DNA-directe 44.8 19 0.00065 29.4 3.8 42 51-92 75-116 (152)
48 1wgn_A UBAP1, ubiquitin associ 43.6 36 0.0012 23.2 4.3 39 241-286 20-58 (63)
49 1uxc_A FRUR (1-57), fructose r 43.4 34 0.0012 23.3 4.4 45 178-222 7-51 (65)
50 3e3v_A Regulatory protein RECX 43.2 1.1E+02 0.0038 25.2 8.5 71 175-263 90-162 (177)
51 2cpw_A CBL-interacting protein 42.9 29 0.00099 23.8 3.9 38 242-285 21-58 (64)
52 1wj7_A Hypothetical protein (R 42.3 39 0.0013 25.6 4.9 44 234-284 33-77 (104)
53 1wiv_A UBP14, ubiquitin-specif 42.0 26 0.00088 24.7 3.6 38 241-285 30-67 (73)
54 3e3v_A Regulatory protein RECX 41.7 1.5E+02 0.005 24.4 11.4 61 200-263 46-109 (177)
55 2dak_A Ubiquitin carboxyl-term 40.7 51 0.0018 22.3 5.0 39 31-75 8-46 (63)
56 2ooa_A E3 ubiquitin-protein li 40.2 38 0.0013 22.2 3.9 25 64-88 9-33 (52)
57 2bwb_A Ubiquitin-like protein 39.8 26 0.0009 22.2 3.1 16 101-116 6-21 (46)
58 2o71_A Death domain-containing 36.0 1.4E+02 0.0049 22.7 7.4 42 43-92 20-61 (115)
59 1whc_A RSGI RUH-027, UBA/UBX 3 35.3 83 0.0028 21.4 5.3 41 31-76 8-48 (64)
60 2crn_A Ubash3A protein; compac 35.0 74 0.0025 21.7 5.0 42 31-77 8-49 (64)
61 1veg_A NEDD8 ultimate buster-1 34.4 64 0.0022 23.4 4.8 22 34-56 31-52 (83)
62 2jt1_A PEFI protein; solution 34.0 78 0.0027 22.4 5.2 16 236-251 37-52 (77)
63 1dv0_A DNA repair protein HHR2 33.9 13 0.00046 23.8 0.9 22 242-263 6-27 (47)
64 1wiv_A UBP14, ubiquitin-specif 33.5 70 0.0024 22.4 4.8 38 32-75 29-66 (73)
65 2cos_A Serine/threonine protei 33.4 40 0.0014 22.3 3.2 43 67-116 10-52 (54)
66 4hpz_A Dtale2; DNA binding pro 32.4 15 0.0005 34.6 1.2 234 42-295 173-421 (463)
67 2dag_A Ubiquitin carboxyl-term 31.7 39 0.0013 23.8 3.2 41 241-287 10-50 (74)
68 2xzm_O RPS13E; ribosome, trans 31.6 18 0.00063 29.3 1.6 35 230-264 25-59 (153)
69 1wr1_B Ubiquitin-like protein 31.5 46 0.0016 22.3 3.3 15 101-115 16-30 (58)
70 3j20_Q 30S ribosomal protein S 30.9 19 0.00066 29.5 1.6 38 230-267 23-60 (158)
71 2l8n_A Transcriptional repress 30.1 71 0.0024 21.8 4.3 43 177-222 15-57 (67)
72 3d5l_A Regulatory protein RECX 30.1 2.6E+02 0.0088 23.8 10.0 71 175-263 133-205 (221)
73 1vej_A Riken cDNA 4931431F19; 29.7 43 0.0015 23.7 3.1 41 237-284 26-67 (74)
74 2cpw_A CBL-interacting protein 28.3 94 0.0032 21.1 4.6 41 31-76 18-58 (64)
75 1g6u_A Domain swapped dimer; d 27.9 88 0.003 19.1 3.8 22 239-260 4-25 (48)
76 2dai_A Ubadc1, ubiquitin assoc 27.3 60 0.0021 23.4 3.6 39 241-286 30-68 (83)
77 2of5_A Death domain-containing 27.1 1.5E+02 0.005 22.7 6.1 39 45-91 22-60 (114)
78 3tl4_X Glutaminyl-tRNA synthet 26.9 1.5E+02 0.005 24.9 6.5 14 41-54 12-25 (187)
79 1ixs_A Holliday junction DNA h 26.9 59 0.002 22.0 3.3 24 67-90 18-41 (62)
80 1y14_A B32, RPB4, DNA-directed 26.5 50 0.0017 27.8 3.5 44 49-92 109-152 (187)
81 3u5c_N S27A, YS15, 40S ribosom 25.7 79 0.0027 25.6 4.3 25 65-89 32-56 (151)
82 2cp8_A NEXT to BRCA1 gene 1 pr 25.2 1.3E+02 0.0045 19.8 4.6 15 68-82 11-25 (54)
83 2dkl_A Trinucleotide repeat co 25.1 91 0.0031 22.6 4.3 38 241-285 22-59 (85)
84 2dna_A Unnamed protein product 25.1 61 0.0021 22.5 3.1 14 69-82 22-35 (67)
85 1vej_A Riken cDNA 4931431F19; 25.0 72 0.0025 22.5 3.6 40 64-111 27-67 (74)
86 2xzm_O RPS13E; ribosome, trans 24.8 86 0.003 25.4 4.4 25 66-90 35-59 (153)
87 3oq9_A Tumor necrosis factor r 24.6 64 0.0022 23.5 3.4 28 66-93 12-39 (86)
88 1q08_A Zn(II)-responsive regul 23.9 59 0.002 23.7 3.2 23 241-263 6-28 (99)
89 1q02_A Sequestosome 1; helical 23.7 1.2E+02 0.0043 19.7 4.2 28 203-230 7-34 (52)
90 3ezq_B Protein FADD; apoptosis 23.1 2.6E+02 0.0088 21.5 7.2 53 67-124 18-71 (122)
91 3u5c_N S27A, YS15, 40S ribosom 21.9 26 0.00089 28.4 0.8 32 233-264 26-57 (151)
92 1uxc_A FRUR (1-57), fructose r 21.8 1.9E+02 0.0064 19.4 5.5 45 248-293 8-52 (65)
93 1vek_A UBP14, ubiquitin-specif 21.3 92 0.0031 22.5 3.6 24 241-264 30-53 (84)
94 1go3_F DNA-directed RNA polyme 21.2 86 0.0029 23.7 3.6 38 54-92 41-78 (107)
95 3ezq_A Tumor necrosis factor r 21.2 67 0.0023 24.8 3.0 28 65-92 19-46 (115)
96 1wlq_C CDT1 protein; coiled-co 21.1 1.3E+02 0.0044 25.6 5.0 66 130-203 32-97 (201)
97 1go3_F DNA-directed RNA polyme 20.8 2.5E+02 0.0085 21.1 6.2 34 233-266 45-78 (107)
98 3j20_Q 30S ribosomal protein S 20.6 1.8E+02 0.0063 23.6 5.6 24 67-90 34-57 (158)
99 2qeu_A Putative carboxymuconol 20.4 3E+02 0.01 21.3 7.7 77 181-263 25-108 (141)
100 3hou_D DNA-directed RNA polyme 20.4 84 0.0029 27.1 3.7 20 72-91 166-185 (221)
101 3k9o_A Ubiquitin-conjugating e 20.3 80 0.0028 26.7 3.7 27 238-264 161-187 (201)
102 1ich_A TNF-1, tumor necrosis f 20.1 2E+02 0.007 21.9 5.5 55 67-125 26-81 (112)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.4e-52 Score=400.22 Aligned_cols=303 Identities=14% Similarity=0.191 Sum_probs=268.2
Q ss_pred CCCCCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHH
Q 044946 28 TPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIA 107 (365)
Q Consensus 28 ~~~~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~ 107 (365)
++..+..+|+|| .++|++.+++.++..++ ++.++++++++++||+++|++++||++++.++|.+|.++++ ++.|+++
T Consensus 15 ~~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l-~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~ 91 (343)
T 3mva_O 15 EPLKNEDLLKNL-LTMGVDIDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWD 91 (343)
T ss_dssp -----CCHHHHH-HHHTCCHHHHHHHCGGG-GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHH
T ss_pred CccccHHHHHHH-HHcCCCHHHHHHhCchh-hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHH
Confidence 344467788999 89999999988876666 66678999999999999999999999999999999999976 7999999
Q ss_pred HHHHcCCCCchHHHHHHH--------hc-cccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHH
Q 044946 108 YFQQLGLVGSDLGKFISN--------LE-RKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYL 178 (365)
Q Consensus 108 fL~~lGl~~~~i~~ll~~--------~~-~~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L 178 (365)
||+++|++++++++++.+ .+ +++.|+++||+++|++ ++++++++.++|++| ++++++ .++++++|
T Consensus 92 fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~---~~~i~~ll~~~P~il-~~~~e~--~~~~v~~L 165 (343)
T 3mva_O 92 LWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLT---RKCLCRLLTNAPRTF-SNSLDL--NKQMVEFL 165 (343)
T ss_dssp HHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCC---HHHHHHHHHHCGGGG-TSCHHH--HHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCC---HHHHHHHHHhCChhh-eeCHHH--hhHHHHHH
Confidence 999999999999999988 33 4899999999999999 999999999999999 999997 59999999
Q ss_pred HHcCCC------hhhHHHHhhhcCccceecchhHHHHHHHHH-hccCCCch--hhHhHHHHHHhccChhhHHHHHHHHH-
Q 044946 179 KSCGIV------GSQLSMLLVRLPRLFCFNDLKLRQLVLRVL-DMGFTTDS--RMFVHGLDALCRLSEKTFDRKLDLFR- 248 (365)
Q Consensus 179 ~~lG~~------~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~-~lG~~~~~--~~~~~~~~~l~~~s~~~l~~~v~fL~- 248 (365)
+++|++ .+.|.++++++|.++++++++++++++|++ ++|++++. .++.+.++.+...+.+.+++++.|+.
T Consensus 166 ~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e 245 (343)
T 3mva_O 166 QAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKE 245 (343)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHH
T ss_pred HHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHH
Confidence 987764 788999999999999999889999999999 59999964 33333344444567788999987776
Q ss_pred ---HhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhhHhhcCcccccCCCCcchhHHHHHHHHHHhcccc
Q 044946 249 ---SYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLK 325 (365)
Q Consensus 249 ---~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~ 325 (365)
++||+++|+.+|+.++|++|++|.|+|++|++||.+ ||++.++|+++|++|+||+| ||+|||++ |+++|+
T Consensus 246 ~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~---L~~~g~-- 318 (343)
T 3mva_O 246 KLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKE---LVNAGC-- 318 (343)
T ss_dssp HHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHH---HHTTTC--
T ss_pred HHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHH---HHHCCC--
Confidence 699999999999999999999999999999999998 99999999999999999999 99999965 568898
Q ss_pred CCcCcc--chhccChHhHHHHhhh
Q 044946 326 KDWSFP--SVLVLSEENFLNKYVL 347 (365)
Q Consensus 326 ~~~~l~--~~l~~s~~~F~~~~v~ 347 (365)
+++++ ++|.+||++|.++|.+
T Consensus 319 -~~~~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 319 -NLSTLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp -CSSSSCGGGGGSCHHHHHHHHHH
T ss_pred -CCCCCcchhhcCCHHHHHHHHhc
Confidence 46666 9999999999999975
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=6.2e-46 Score=346.12 Aligned_cols=249 Identities=19% Similarity=0.314 Sum_probs=213.6
Q ss_pred chhHHHHHHhcCCCHHHHHHHHhhcccCCCC---CCchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHH
Q 044946 33 SIFLNYLIETVNIPKSRALVISNQFSRIKTL---EKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYF 109 (365)
Q Consensus 33 ~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~---~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL 109 (365)
+.+++|| .++|++.+++.+.....|.+... +++.++++||+++|+++++|++++.++|.+|.+++++ ++|+++||
T Consensus 6 s~~l~~L-~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKL-VLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHH-HHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHH-HHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 4567888 67888888887766665555432 3577788888888888888888888888888888876 88887777
Q ss_pred HHcCCCCchHHHHHHHhccccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHH-HHcCCChhhH
Q 044946 110 QQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYL-KSCGIVGSQL 188 (365)
Q Consensus 110 ~~lGl~~~~i~~ll~~~~~~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L-~~lG~~~~~i 188 (365)
+++|++ ++++++++.++|++| ++++++ ++|+++|| +++|++.+++
T Consensus 84 ~~~Gls-------------------------------~~~i~~~l~~~P~lL-~~s~~~--l~~~v~~L~~~lG~~~~~i 129 (270)
T 3m66_A 84 HSKNFS-------------------------------KADVAQMVRKAPFLL-NFSVER--LDNRLGFFQKELELSVKKT 129 (270)
T ss_dssp HHTTCC-------------------------------HHHHHHHHHHSTTGG-GSCHHH--HHHHHHHHHHHHCCCHHHH
T ss_pred HHcCCC-------------------------------HHHHHHHHHhCCHHH-cCCHHH--HHHHHHHHHHHhCCCHHHH
Confidence 777776 778888999999999 999884 99999999 4799999999
Q ss_pred HHHhhhcCccceecchhHHHHHHHHHhccCCCchhhHhHHHHHHhccChhhHHHHHHHH-HHhCCCHHHHHHHHHhcCcc
Q 044946 189 SMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLF-RSYGFSKEECIEMIRTAPRL 267 (365)
Q Consensus 189 ~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL-~~~G~s~~ev~~~i~~~P~i 267 (365)
.+++.++|++++.+. ++++++++++ .++||+.+|+.+|+.++|++
T Consensus 130 ~~ll~~~P~il~~s~----------------------------------e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~i 175 (270)
T 3m66_A 130 RDLVVRLPRLLTGSL----------------------------------EPVKENMKVYRLELGFKHNEIQHMITRIPKM 175 (270)
T ss_dssp HHHHHHSGGGGTSCS----------------------------------HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGG
T ss_pred HHHHHhCCcceeech----------------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCChh
Confidence 999999999987764 4567888876 49999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHhhCCChhhHhhcCcccccCCCCcchhHHHHHHHHHHhccccCC---cCccchhccChHhHHHH
Q 044946 268 LSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKD---WSFPSVLVLSEENFLNK 344 (365)
Q Consensus 268 L~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~~~---~~l~~~l~~s~~~F~~~ 344 (365)
+++|.++++++++||.++||++.++|+++|.+|+||+| ||+|||+|+++|.++|+.... +++.+++.+||++|+++
T Consensus 176 l~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~ 254 (270)
T 3m66_A 176 LTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEE 254 (270)
T ss_dssp GTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHH
T ss_pred heecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999 999999999999999987644 67777999999999999
Q ss_pred hhhcCCCC
Q 044946 345 YVLSFGDD 352 (365)
Q Consensus 345 ~v~~~~~~ 352 (365)
|++.+.|+
T Consensus 255 ~~~~~~ee 262 (270)
T 3m66_A 255 IAKASVQD 262 (270)
T ss_dssp TTCSCHHH
T ss_pred HhcCCHHH
Confidence 99998876
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=287.00 Aligned_cols=211 Identities=18% Similarity=0.293 Sum_probs=189.1
Q ss_pred CchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCCCchHHHHHHHhccccchhHHHHHHHhccC
Q 044946 65 KPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAED 144 (365)
Q Consensus 65 ~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~~~~i~~ll~~~~~~l~p~v~fL~~~g~~~ 144 (365)
+++.++..|.++||++++|++++..+|.++.. ++.+++.||..+|++
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls----------------------------- 91 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLN----------------------------- 91 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCC-----------------------------
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCC-----------------------------
Confidence 46778999999999999999999999999743 577888888888887
Q ss_pred CCchHHHHHHHhccccccccCCCCcchhchHHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCchhh
Q 044946 145 SNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRM 224 (365)
Q Consensus 145 ~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~ 224 (365)
.++|+++|.++|++| +++++ +++++++||+++|++.++|.+++.++|++|+++.
T Consensus 92 --~e~V~kiL~k~P~lL-~~s~e--~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~--------------------- 145 (335)
T 4fp9_B 92 --PEPVCVVLKKSPQLL-KLPIM--QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ--------------------- 145 (335)
T ss_dssp --HHHHHHHHHHCGGGG-GSCHH--HHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCH---------------------
T ss_pred --HHHHHHHHHhChhhc-cCCHH--HHHHHHHHHHHcCCCHHHHHHHHHhCchhhccCh---------------------
Confidence 889999999999999 99998 5999999999999999999999999999998764
Q ss_pred HhHHHHHHhccChhhHHHHHHHHH-HhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhhHhhcCcccccC
Q 044946 225 FVHGLDALCRLSEKTFDRKLDLFR-SYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYS 303 (365)
Q Consensus 225 ~~~~~~~l~~~s~~~l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~S 303 (365)
+.+..++.+|. ++||+.+||.+|+.++|+||++|.++|++|++||+++||++..+|++ |.+|+||
T Consensus 146 -------------e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~yS 211 (335)
T 4fp9_B 146 -------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYS 211 (335)
T ss_dssp -------------HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSC
T ss_pred -------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhcc
Confidence 45677778886 89999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCcchhHHHHHHHHHHhccc----------cCCcCccchhccChHhHHHHhhhcCCCC
Q 044946 304 IENRVIPRYRVFQIVMVRRML----------KKDWSFPSVLVLSEENFLNKYVLSFGDD 352 (365)
Q Consensus 304 le~ri~pR~~~l~~L~~~g~~----------~~~~~l~~~l~~s~~~F~~~~v~~~~~~ 352 (365)
++ ||+|||.||+.| |.. ..+++|.+++..||++|++++.+...++
T Consensus 212 Le-RIkpRH~fL~~l---G~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~ee 266 (335)
T 4fp9_B 212 LT-KIKQRHIYLERL---GRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEE 266 (335)
T ss_dssp HH-HHHHHHHHHHHH---TSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHH
T ss_pred HH-HHHHHHHHHHHc---CCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHH
Confidence 99 999999998765 543 1356899999999999999998776654
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3.4e-35 Score=282.47 Aligned_cols=287 Identities=20% Similarity=0.235 Sum_probs=238.3
Q ss_pred cccccccccccccchhhhccccCC-CCCCCchhH-HHHHHhcCCCHHHHHHHHhhcccCCCC--CCchhHHHHHHhCCCC
Q 044946 4 LNSFRNSQNFAIKSFFSFFSSVSK-TPNTNSIFL-NYLIETVNIPKSRALVISNQFSRIKTL--EKPQTVSQFLHSVGFS 79 (365)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v-~yL~~~~Gls~~~~~~i~~~~p~l~~~--~~~~~~~~~L~~lG~s 79 (365)
+.+| ++||+++..+.+.+..+.. ++ .++++| +|| .++|++.+++++++.++|.++.. +++.+.++||+++|++
T Consensus 23 v~~L-~s~Gl~~~~~~~~~p~l~~~s~-~~~~~vl~fL-~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s 99 (343)
T 3mva_O 23 LKNL-LTMGVDIDMARKRQPGVFHRMI-TNEQDLKMFL-LSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTS 99 (343)
T ss_dssp HHHH-HHHTCCHHHHHHHCGGGGGCSC-CCHHHHHHHH-HHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSC
T ss_pred HHHH-HHcCCCHHHHHHhCchhhccCc-ccHHHHHHHH-HHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCC
Confidence 4566 7899999888776655522 23 367776 999 79999999999999999998743 5578889999999999
Q ss_pred hHHHHHHHHhCCcceecCcc-CcHHHHHHHHHHcCCCCchHHHHHHH--------hccccchhHHHHHHHhcc-CC--Cc
Q 044946 80 DTHIQLAVHTKPTILFADVN-KTLKPKIAYFQQLGLVGSDLGKFISN--------LERKLIPCVEILKKILAE-DS--NN 147 (365)
Q Consensus 80 ~~~i~~li~~~P~lL~~~~~-~~l~p~l~fL~~lGl~~~~i~~ll~~--------~~~~l~p~v~fL~~~g~~-~~--~~ 147 (365)
++++++++.++|.+|..+.+ +++.|+++||+++|++.++|++++.+ +++. .|+++||+++|++ +. ++
T Consensus 100 ~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~ 178 (343)
T 3mva_O 100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPA 178 (343)
T ss_dssp HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHH
Confidence 99999999999995544445 48999999999999999999999998 3444 9999999999863 11 15
Q ss_pred hHHHHHHHhccccccccCCCCcchhchHHHHHH-cCCChhhHHHHhhhc-CccceecchhHHHHHHHHH----hccCCCc
Q 044946 148 EDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKS-CGIVGSQLSMLLVRL-PRLFCFNDLKLRQLVLRVL----DMGFTTD 221 (365)
Q Consensus 148 ~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~-lG~~~~~i~~ll~~~-P~~l~~s~~~i~~~v~~l~----~lG~~~~ 221 (365)
+.|.++++++|.+| +++ ++ +++++++||++ +|++++++.+++... |.+++.+.+.+++++.++. ++|++++
T Consensus 179 ~~I~~il~~~P~iL-~~s-~~-~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ 255 (343)
T 3mva_O 179 DFVRKIIFKNPFIL-IQS-TK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEE 255 (343)
T ss_dssp HHHHHHHHHCGGGG-GSC-HH-HHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHhCChHh-cCC-HH-HHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHH
Confidence 68999999999999 999 55 79999999995 999999999999875 5888888888888886665 6999988
Q ss_pred h--hhHhHHHHHHhccChhhHHHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhhHhhcCcc
Q 044946 222 S--RMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCC 299 (365)
Q Consensus 222 ~--~~~~~~~~~l~~~s~~~l~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~ 299 (365)
. .++.++|.++ ..|+++++++++||.++|++.++| .++|++|++|.|+|+++++||.+ .|++... .+-.+
T Consensus 256 ev~~~v~~~P~il-~~s~~~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sleri~~R~~~L~~-~g~~~~~--~~~~~ 327 (343)
T 3mva_O 256 EVQKFVLSYPDVI-FLAEKKFNDKIDCLMEENISISQI----IENPRVLDSSISTLKSRIKELVN-AGCNLST--LNITL 327 (343)
T ss_dssp HHHHHHHTCGGGG-GSCHHHHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS--SCGGG
T ss_pred HHHHHHHhCCchh-cccHHHHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC--Ccchh
Confidence 5 5777777766 567888999999999999999997 48999999999999999999995 6986542 22267
Q ss_pred cccCCC
Q 044946 300 MMYSIE 305 (365)
Q Consensus 300 L~~Sle 305 (365)
|+.|=+
T Consensus 328 l~~s~~ 333 (343)
T 3mva_O 328 LSWSKK 333 (343)
T ss_dssp GGSCHH
T ss_pred hcCCHH
Confidence 777644
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.97 E-value=6.9e-31 Score=244.44 Aligned_cols=176 Identities=19% Similarity=0.302 Sum_probs=158.7
Q ss_pred hHHHHHHhcCCCHHHHHHHHhhcccCCCC--CCchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHH-H
Q 044946 35 FLNYLIETVNIPKSRALVISNQFSRIKTL--EKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQ-Q 111 (365)
Q Consensus 35 ~v~yL~~~~Gls~~~~~~i~~~~p~l~~~--~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~-~ 111 (365)
.++|| .++|++.+++++++.+.|.+.+. +++.+.++||+++|+++++|++++.++|++|..+++ +++|+++||+ +
T Consensus 44 ~l~fL-~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~ 121 (270)
T 3m66_A 44 MLLFL-KDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKE 121 (270)
T ss_dssp HHHHH-HHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHH
Confidence 56999 78999999999999999999753 447899999999999999999999999999999998 5999999994 7
Q ss_pred cCCCCchHHHHHHHhccccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHH-HHcCCChhhHHH
Q 044946 112 LGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYL-KSCGIVGSQLSM 190 (365)
Q Consensus 112 lGl~~~~i~~ll~~~~~~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L-~~lG~~~~~i~~ 190 (365)
+|++ ++++.+++.++|.++ +.+.++ ++++++++ +++|++.++|.+
T Consensus 122 lG~~-------------------------------~~~i~~ll~~~P~il-~~s~e~--~~~~v~~l~~~~G~s~~ei~~ 167 (270)
T 3m66_A 122 LELS-------------------------------VKKTRDLVVRLPRLL-TGSLEP--VKENMKVYRLELGFKHNEIQH 167 (270)
T ss_dssp HCCC-------------------------------HHHHHHHHHHSGGGG-TSCSHH--HHHHHHHHHHTSCCCHHHHHH
T ss_pred hCCC-------------------------------HHHHHHHHHhCCcce-eechHH--HHHHHHHHHHHcCCCHHHHHH
Confidence 8887 788999999999999 999985 99999976 679999999999
Q ss_pred HhhhcCccceecchhHHHHHHHHHhccCCCchhhHhHHHHHHhccChhhHHHHHHHHH-HhCCCHHHHHHHHHhcCcccc
Q 044946 191 LLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFR-SYGFSKEECIEMIRTAPRLLS 269 (365)
Q Consensus 191 ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~ 269 (365)
++.++|++++++ +++++++++||. ++|++.++|. ++|++|+
T Consensus 168 ~v~~~P~il~~s----------------------------------~~~l~~k~~fL~~~mg~~~~~i~----~~P~~l~ 209 (270)
T 3m66_A 168 MITRIPKMLTAN----------------------------------KMKLTETFDFVHNVMSIPHHIIV----KFPQVFN 209 (270)
T ss_dssp HHHHCGGGGTSC----------------------------------HHHHHHHHHHHHTTSCCCHHHHH----HCGGGGG
T ss_pred HHHhCChhheec----------------------------------HHHHHHHHHHHHHHhCCCHHHHH----hCchHhh
Confidence 999999999776 457888999997 7999998874 8999999
Q ss_pred cCHHHHHHHHHHHHH
Q 044946 270 ASEERLKSGLDFFLK 284 (365)
Q Consensus 270 ~s~e~l~~k~~fL~~ 284 (365)
+|.|+|+|+..|+..
T Consensus 210 ~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 210 TRLFKVKERHLFLTY 224 (270)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999884
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.91 E-value=6e-24 Score=201.85 Aligned_cols=177 Identities=13% Similarity=0.200 Sum_probs=160.2
Q ss_pred HHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCC
Q 044946 36 LNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLV 115 (365)
Q Consensus 36 v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~ 115 (365)
+..| .++|++++++++++...|.+.. .++.+++++|..+|++.++|.++|.++|.+|..+++ +|+|+++||+++|++
T Consensus 50 l~~L-~d~Gfs~~~i~~il~~~P~il~-~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~~lGl~ 126 (335)
T 4fp9_B 50 MSSL-LDMGFSNAHINELLSVRRGASL-QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLG 126 (335)
T ss_dssp HHHH-HHTTCCHHHHHHHHHHCSSCCH-HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHHHTTCT
T ss_pred HHHH-HHCCCCHHHHHHHHHhCcccch-hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHHHcCCC
Confidence 4667 6899999999999999999864 678899999999999999999999999999999997 699999999999987
Q ss_pred CchHHHHHHHhccccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHH-HcCCChhhHHHHhhh
Q 044946 116 GSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLK-SCGIVGSQLSMLLVR 194 (365)
Q Consensus 116 ~~~i~~ll~~~~~~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~-~lG~~~~~i~~ll~~ 194 (365)
.+++.+++.++|.+| +++.++ ++.++.+|+ ++|++.++|.+|+.+
T Consensus 127 -------------------------------~~~i~~ll~~~P~lL-~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r 172 (335)
T 4fp9_B 127 -------------------------------EGKLKRVLYCCPEIF-TMRQQD--INDTVRLLKEKCLFTVQQVTKILHS 172 (335)
T ss_dssp -------------------------------TTTHHHHHHHCGGGG-TSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHhCchhh-ccChHH--HHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 678899999999999 999985 999999986 599999999999999
Q ss_pred cCccceecchhHHHHHHHHHhccCCCchhhHhHHHHHHhccChhhHHHHHHHHH-HhCCCHHHHHHHHHhcCcccccCHH
Q 044946 195 LPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFR-SYGFSKEECIEMIRTAPRLLSASEE 273 (365)
Q Consensus 195 ~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~~s~e 273 (365)
+|++|+++ .+++++|++||. ++|++.++|. + |++|+||.+
T Consensus 173 ~P~lL~~S----------------------------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLe 213 (335)
T 4fp9_B 173 CPSVLRED----------------------------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLT 213 (335)
T ss_dssp CGGGGTSC----------------------------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHH
T ss_pred CChhhhCC----------------------------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHH
Confidence 99999776 456899999998 9999999985 2 999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 044946 274 RLKSGLDFFLKKIEFG 289 (365)
Q Consensus 274 ~l~~k~~fL~~~mg~~ 289 (365)
+|+++..||.. +|..
T Consensus 214 RIkpRH~fL~~-lG~~ 228 (335)
T 4fp9_B 214 KIKQRHIYLER-LGRY 228 (335)
T ss_dssp HHHHHHHHHHH-HTSC
T ss_pred HHHHHHHHHHH-cCCc
Confidence 99999999995 7874
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.28 E-value=3.9e-11 Score=97.97 Aligned_cols=170 Identities=14% Similarity=0.260 Sum_probs=137.9
Q ss_pred HHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhc
Q 044946 137 LKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDM 216 (365)
Q Consensus 137 L~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~l 216 (365)
+--+|.. ++-++-++.+.|.+| ...+- .++.+-.||+.+|+.+..+.+++--+|.+|+...
T Consensus 40 fillgln---pepvcvvlkkspqll-klpim--qmrkrssylqklglgegklkrvlyccpeiftmrq------------- 100 (239)
T 4fzv_B 40 FILLGLN---PEPVCVVLKKSPQLL-KLPIM--QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ------------- 100 (239)
T ss_dssp HHHHCCC---TTHHHHHHHSCGGGG-TSCHH--HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-------------
T ss_pred HHhhcCC---CCceEEEecCCHHHh-cChHH--HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-------------
Confidence 3345555 888888888888888 77665 3777888888888888888888888888886543
Q ss_pred cCCCchhhHhHHHHHHhccChhhHHHHHHHHH-HhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhhHhh
Q 044946 217 GFTTDSRMFVHGLDALCRLSEKTFDRKLDLFR-SYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVR 295 (365)
Q Consensus 217 G~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~ 295 (365)
..+...+..|+ ++-|+.+++.+++..||.++.-+...+.-|+.|-.-.||+..-+|++
T Consensus 101 ---------------------qdindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk 159 (239)
T 4fzv_B 101 ---------------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK 159 (239)
T ss_dssp ---------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH
T ss_pred ---------------------hhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH
Confidence 45677788888 88999999999999999999999999999999888889999999998
Q ss_pred cCcccccCCCCcchhHHHHHHHHHH------hcccc-CCcCccchhccChHhHHHHhhhc
Q 044946 296 MPCCMMYSIENRVIPRYRVFQIVMV------RRMLK-KDWSFPSVLVLSEENFLNKYVLS 348 (365)
Q Consensus 296 ~P~~L~~Sle~ri~pR~~~l~~L~~------~g~~~-~~~~l~~~l~~s~~~F~~~~v~~ 348 (365)
. .+|.||+. .|+.||-+++.|-. +|-.. .++-+.+++..|+.+|+.+-...
T Consensus 160 s-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartact 217 (239)
T 4fzv_B 160 S-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACT 217 (239)
T ss_dssp T-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCS
T ss_pred H-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcc
Confidence 6 79999999 79999999987721 22221 35677899999999999887544
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=97.85 E-value=0.0002 Score=58.52 Aligned_cols=146 Identities=15% Similarity=0.253 Sum_probs=114.1
Q ss_pred hHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCCCchHHHHHHHhccccchhHHHHHHHhccCCCc
Q 044946 68 TVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNN 147 (365)
Q Consensus 68 ~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~~~~i~~ll~~~~~~l~p~v~fL~~~g~~~~~~ 147 (365)
.++.-+--+|++++-+.-++.+.|++|....- .++.+-.||+.+|+. +
T Consensus 35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglg-------------------------------e 82 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLG-------------------------------E 82 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTC-------------------------------S
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCC-------------------------------c
Confidence 34555556899999999999999999988765 566666677776665 6
Q ss_pred hHHHHHHHhccccccccCCCCcchhchHHHHHH-cCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCchhhHh
Q 044946 148 EDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKS-CGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFV 226 (365)
Q Consensus 148 ~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~-lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~~~ 226 (365)
..+.+++-.+|.|+ ++.... +...+..|++ +-+...++.+++-.+|.++.-+..
T Consensus 83 gklkrvlyccpeif-tmrqqd--indtvrllkekclftvqqvtkilhscpsvlredlg---------------------- 137 (239)
T 4fzv_B 83 GKLKRVLYCCPEIF-TMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG---------------------- 137 (239)
T ss_dssp SCCHHHHHHCGGGG-TSCHHH--HHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTT----------------------
T ss_pred cchhhheecCcHHH-HHHHhh--HhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHh----------------------
Confidence 67888899999999 988774 8889999987 888999999999999999864432
Q ss_pred HHHHHHhccChhhHHHHHHHHH-HhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCC
Q 044946 227 HGLDALCRLSEKTFDRKLDLFR-SYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEF 288 (365)
Q Consensus 227 ~~~~~l~~~s~~~l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~ 288 (365)
.++-+..|-- .+|+.-.++.+ ...+.||..+++.+--||.. +|.
T Consensus 138 ------------qleykfqyayfrmgikhpdivk-----seylqysltkikqrhiyler-lgr 182 (239)
T 4fzv_B 138 ------------QLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLTKIKQRHIYLER-LGR 182 (239)
T ss_dssp ------------HHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred ------------hhhhhHhHHHHHccCCCcchhH-----HHHHHHHHHHHHHHHhHHHH-hcc
Confidence 3445555544 77887777643 45789999999999999984 675
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=91.81 E-value=1 Score=35.41 Aligned_cols=100 Identities=10% Similarity=0.083 Sum_probs=72.7
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHH------hCCCChHHHHHHHHhCCcceecCccCcHHHH
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLH------SVGFSDTHIQLAVHTKPTILFADVNKTLKPK 105 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~------~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~ 105 (365)
...+|..| -+.||+...+.+++... ..+++..++||- +-|+++.++...+..+..--.. .. .-...
T Consensus 8 e~~~v~~l-~~MGFp~~~~~kAl~~~-----g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~-~~-~~~~~ 79 (118)
T 4ae4_A 8 ERQCVETV-VNMGYSYECVLRAMKAA-----GANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK-MM-EFLQL 79 (118)
T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH-HH-HHHHH
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHH-----CcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc-cc-cCHHH
Confidence 45678888 67999999999998775 247888888885 4688998888888754311000 00 12245
Q ss_pred HHHHHHcCCCCchHHHHHHHhccccchhHHHHHH
Q 044946 106 IAYFQQLGLVGSDLGKFISNLERKLIPCVEILKK 139 (365)
Q Consensus 106 l~fL~~lGl~~~~i~~ll~~~~~~l~p~v~fL~~ 139 (365)
+.-|.++|++...+.+.|..-.+++...++||..
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7788899999999998888877777777777754
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=90.19 E-value=0.74 Score=30.84 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHh
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIRT 263 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~~ 263 (365)
.+..|++||++-|++.+||..++.+
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4789999999999999999988876
No 11
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=84.85 E-value=2.5 Score=43.00 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=68.5
Q ss_pred HHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHH---HH-hCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHH-HcC
Q 044946 39 LIETVNIPKSRALVISNQFSRIKTLEKPQTVSQF---LH-SVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQ-QLG 113 (365)
Q Consensus 39 L~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~---L~-~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~-~lG 113 (365)
|...+|+|++++.+|.... -....++.+.+. |. ..|||++||-.|-..+---=... .++..+.-|. ..|
T Consensus 215 L~~~~~ls~~qVvaIAsn~---gGkqALeaV~~~lp~l~~~~gls~~qvVaIAsn~GGkQALe---aV~~llp~L~~~~g 288 (1047)
T 3ugm_A 215 LCQAHGLTPAQVVAIASHD---GGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALE---TVQRLLPVLCQAHG 288 (1047)
T ss_dssp HHHSSCCCHHHHTTTTTST---THHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHHHH---HHHHHSHHHHHHHC
T ss_pred HhhhcCCCHHHHHHHhhcc---chHHHHHHHHHhhhhhhhccCCCHHHHHHHHhcCcchHHHH---HHHHHhhhhhcccc
Confidence 3334677777776654321 000123333333 32 58888888887765332111000 1122222333 378
Q ss_pred CCCchHHHHHHH------hccccchhHHHHH-HHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHH-HcCCCh
Q 044946 114 LVGSDLGKFISN------LERKLIPCVEILK-KILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLK-SCGIVG 185 (365)
Q Consensus 114 l~~~~i~~ll~~------~~~~l~p~v~fL~-~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~-~lG~~~ 185 (365)
++++++..+-.. ++ .+....--|. ..|++ +++|.++-..+..== -++ .+...+-.|. +.|+++
T Consensus 289 ls~~qvvaIAsn~GGkQALe-tV~~llp~L~~~~glt---p~qvVaIAsn~GGkQ---ALe--~V~~llpvL~~~~gls~ 359 (1047)
T 3ugm_A 289 LTPDQVVAIASHGGGKQALE-TVQRLLPVLCQAHGLT---PDQVVAIASHDGGKQ---ALE--TVQRLLPVLCQAHGLTP 359 (1047)
T ss_dssp CCHHHHHHHHSSTTHHHHHH-HHHHHHHHHHHHTCCC---HHHHHHHHSSSSCHH---HHH--HHHHHHHHHHTTSCCCH
T ss_pred CCHHHHHHHHhcCchHHHHH-HHHHHHHHHHhhcCCC---HHHheeecccCccHH---HHH--HHHHHhhhhhhhccCCH
Confidence 888888877655 22 1111111222 35677 888887765432111 111 3444444555 478888
Q ss_pred hhHHHHh
Q 044946 186 SQLSMLL 192 (365)
Q Consensus 186 ~~i~~ll 192 (365)
++|-.+-
T Consensus 360 ~qvVaIA 366 (1047)
T 3ugm_A 360 DQVVAIA 366 (1047)
T ss_dssp HHHHHHH
T ss_pred HHhhhhh
Confidence 8876543
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=83.88 E-value=2 Score=30.33 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIRTA 264 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~~~ 264 (365)
.+..|++||++-|++.+||...+.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 47899999999999999999998874
No 13
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=83.65 E-value=2.3 Score=40.24 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=28.0
Q ss_pred hHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCC
Q 044946 35 FLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFS 79 (365)
Q Consensus 35 ~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s 79 (365)
+|.-| -++||+++++.++++.. ..+++..++||-+ |++
T Consensus 171 ~i~~l-~~MGf~~~~~~~AL~a~-----~nn~~~A~e~L~~-gip 208 (368)
T 1oqy_A 171 MLTEI-MSMGYERERVVAALRAS-----YNNPHRAVEYLLT-GIP 208 (368)
T ss_dssp HHHHH-HTTTCCSHHHHHHHHHS-----CSSTTHHHHTTTT-SST
T ss_pred HHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh-CCC
Confidence 57788 67999999998887653 3578888888854 444
No 14
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=81.84 E-value=1.4 Score=41.71 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCCCchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCCCchHHHHHHH--h----------ccc
Q 044946 62 TLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISN--L----------ERK 129 (365)
Q Consensus 62 ~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~~~~i~~ll~~--~----------~~~ 129 (365)
+....+..++-|.++||++.++.+.++..- ++....++||-+ |++...... .. . ...
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~-gip~~~~~~--~~~~~~~~~~~~~~~~~~ 232 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT-GIPGSPEPE--HGSVQESQVSEQPATEAA 232 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT-SSTTCSSCC--CCCCCCCCSSCCCCSSCC
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh-CCCcccccc--cCCccccccccccCcccc
Confidence 445667788889999999999988887542 234556778753 554320000 00 0 000
Q ss_pred cchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHHHcCCChhhHHHHhhhcCccc
Q 044946 130 LIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLF 199 (365)
Q Consensus 130 l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~~l 199 (365)
-...++||++-=- -..++.+|..+|.+| . .+|+.+|-.+-++..+|..+|.-|
T Consensus 233 ~~~~l~~Lr~~pq----f~~lR~~vq~nP~~l-~------------~~lq~l~~~nP~l~~~I~~n~~~F 285 (368)
T 1oqy_A 233 GENPLEFLRDQPQ----FQNMRQVIQQNPALL-P------------ALLQQLGQENPQLLQQISRHQEQF 285 (368)
T ss_dssp SCCTTHHHHHSHH----HHHHHHSTTTCTTHH-H------------HHHTTTTTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHhcChH----HHHHHHHHHhChHHH-H------------HHHHHHHhhCHHHHHHHHHCHHHH
Confidence 0112455554211 235667777777766 1 345556666666666665555443
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=81.63 E-value=1.4 Score=29.43 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=14.6
Q ss_pred CchhHHHHHHhCCCChHHHHHHHHh
Q 044946 65 KPQTVSQFLHSVGFSDTHIQLAVHT 89 (365)
Q Consensus 65 ~~~~~~~~L~~lG~s~~~i~~li~~ 89 (365)
-+...++||++.|++.++|..++.+
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3455566666666666666655543
No 16
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=70.60 E-value=3.6 Score=28.95 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=17.0
Q ss_pred CchhHHHHHHhCCCChHHHHHHHHh
Q 044946 65 KPQTVSQFLHSVGFSDTHIQLAVHT 89 (365)
Q Consensus 65 ~~~~~~~~L~~lG~s~~~i~~li~~ 89 (365)
-+...++||++.|++.++|..++.+
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3556677777777777777766665
No 17
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.79 E-value=12 Score=24.14 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=8.4
Q ss_pred HHHHHHhcCCCHHHHHHHHh
Q 044946 36 LNYLIETVNIPKSRALVISN 55 (365)
Q Consensus 36 v~yL~~~~Gls~~~~~~i~~ 55 (365)
|.-| .++||+++++.++++
T Consensus 12 i~~L-~~MGF~~~~a~~AL~ 30 (49)
T 1ify_A 12 LTEI-MSMGYERERVVAALR 30 (49)
T ss_dssp HHHH-HHTTCCHHHHHHHHH
T ss_pred HHHH-HHcCCCHHHHHHHHH
Confidence 3444 334444444444443
No 18
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=69.17 E-value=20 Score=27.96 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=64.5
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHH------cCCCCchHHHHHHHh---cc---ccchhH
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQ------LGLVGSDLGKFISNL---ER---KLIPCV 134 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~------lGl~~~~i~~ll~~~---~~---~l~p~v 134 (365)
...++-|.++||+...+.+.+..+- ++....++||.. -|++..++...+... +. .-...+
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v 80 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLM 80 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHH
Confidence 3568888999999999999987652 146667777753 477777776666541 00 011347
Q ss_pred HHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHHH
Q 044946 135 EILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKS 180 (365)
Q Consensus 135 ~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~ 180 (365)
.-|.+.|++ .+.+.++|..+ + + ++..-++||..
T Consensus 81 ~~L~eMGF~---~~~a~~AL~~~-------~--n-d~erAlewL~~ 113 (118)
T 4ae4_A 81 SKFKEMGFE---LKDIKEVLLLH-------N--N-DQDNALEDLMA 113 (118)
T ss_dssp HHHHHTTCC---HHHHHHHHHHT-------T--T-CHHHHHHHHHH
T ss_pred HHHHHcCCC---HHHHHHHHHHc-------C--C-CHHHHHHHHHH
Confidence 889999999 99999999754 2 2 46667888754
No 19
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=68.13 E-value=48 Score=27.04 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=42.8
Q ss_pred hHHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHH-hccCCCchhhHhHHHHHHhccChhhHHHHHHHHHHhCC
Q 044946 174 NIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVL-DMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGF 252 (365)
Q Consensus 174 ~v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~-~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~~~G~ 252 (365)
...-|+.-||+.+.|...+.... .+........+. ..|-... ...+.-++.+.||..-||
T Consensus 87 I~~eL~~KGI~~~~I~~al~~~~------~de~e~a~~l~~Kk~~~~~~-------------~~~~~k~K~~~~L~rrGF 147 (162)
T 3dfg_A 87 IRAELGTHGLDSDAVSAAMATFE------GDWTENALDLIRRRFGEDGP-------------VDLAQRRKAADLLARRGF 147 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTCC------SCHHHHHHHHHHHHHCTTCC-------------CSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHhCc------HhHHHHHHHHHHHhcCCCCC-------------CCHHHHHHHHHHHHHCCC
Confidence 33568889999999988886643 122222333332 2331110 011223455789999999
Q ss_pred CHHHHHHHHHhcC
Q 044946 253 SKEECIEMIRTAP 265 (365)
Q Consensus 253 s~~ev~~~i~~~P 265 (365)
+.+.|..++...|
T Consensus 148 ~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 148 DGNSIRLATRFDL 160 (162)
T ss_dssp CHHHHHHHTTC--
T ss_pred CHHHHHHHHhcCc
Confidence 9999988776543
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.16 E-value=9.2 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.433 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHH
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLK 284 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~ 284 (365)
..+.+|+-|.++||+++++...++.+-. ++..-++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 4567888899999999999888775332 35566778774
No 21
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=65.10 E-value=5.4 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHH
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIR 262 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~ 262 (365)
.+...|+-|.++||+++++.+.+.
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHH
Confidence 456789999999999999988766
No 22
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=63.00 E-value=21 Score=29.31 Aligned_cols=135 Identities=16% Similarity=0.047 Sum_probs=77.2
Q ss_pred hHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCC-ChHHHHHHHHhCCcce-ecCccCcHHHHHHHHHHc
Q 044946 35 FLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGF-SDTHIQLAVHTKPTIL-FADVNKTLKPKIAYFQQL 112 (365)
Q Consensus 35 ~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~-s~~~i~~li~~~P~lL-~~~~~~~l~p~l~fL~~l 112 (365)
|+.|| +.-.-|..++..-+... .+ +++.++.+++.|.+.|+ ++...+....+.- +- ...+ .-.-+-|+.-
T Consensus 23 Al~~L-s~r~~s~~EL~~KL~~k-g~-~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~-~~~~~G~----~~I~~eL~~K 94 (162)
T 3dfg_A 23 ALGLL-VHREHSKKELNRKLQAR-GI-EPEAAQAAVERLAGEGWQDDVRFAASVVRNR-ASSGYGP----LHIRAELGTH 94 (162)
T ss_dssp HHHHH-HHSCCCHHHHHHHHHHT-TC-CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH-HTTTCCH----HHHHHHHHHT
T ss_pred HHHHh-hchhhhHHHHHHHHHhc-CC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHccccH----HHHHHHHHHc
Confidence 55777 77888888888766543 22 34568889999999997 5666665543321 11 1222 2233467788
Q ss_pred CCCCchHHHHHHHhccccchhHHHHHHHhccCCCchHHHHHHHh-ccccccccCCCCcchhchHHHHHHcCCChhhHHHH
Q 044946 113 GLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRR-MSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSML 191 (365)
Q Consensus 113 Gl~~~~i~~ll~~~~~~l~p~v~fL~~~g~~~~~~~~v~~~l~~-~P~iL~~~s~e~~~l~~~v~~L~~lG~~~~~i~~l 191 (365)
|++.+.|...+..++.+ + .+.+.+++.+ +.. - ..+... .-...+.||..-|++.+.|..+
T Consensus 95 GI~~~~I~~al~~~~~d------e----------~e~a~~l~~Kk~~~-~-~~~~~~-~k~K~~~~L~rrGF~~~~I~~~ 155 (162)
T 3dfg_A 95 GLDSDAVSAAMATFEGD------W----------TENALDLIRRRFGE-D-GPVDLA-QRRKAADLLARRGFDGNSIRLA 155 (162)
T ss_dssp TCCHHHHHHHHTTCCSC------H----------HHHHHHHHHHHHCT-T-CCCSHH-HHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHhCcHh------H----------HHHHHHHHHHhcCC-C-CCCCHH-HHHHHHHHHHHCCCCHHHHHHH
Confidence 99988777666442111 0 1122233332 222 1 111111 2344568999999999999887
Q ss_pred hhhcC
Q 044946 192 LVRLP 196 (365)
Q Consensus 192 l~~~P 196 (365)
+...|
T Consensus 156 l~~~~ 160 (162)
T 3dfg_A 156 TRFDL 160 (162)
T ss_dssp TTC--
T ss_pred HhcCc
Confidence 75543
No 23
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=61.49 E-value=6.8 Score=26.02 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhCCC
Q 044946 275 LKSGLDFFLKKIEFG 289 (365)
Q Consensus 275 l~~k~~fL~~~mg~~ 289 (365)
|++.++||.+ |+++
T Consensus 38 le~AmewL~k-~~~~ 51 (54)
T 2cos_A 38 IEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHHH-HSCS
T ss_pred HHHHHHHHHH-hcCC
Confidence 5555555552 4443
No 24
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=61.05 E-value=11 Score=26.65 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=24.9
Q ss_pred HHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHH--HHHHHcCCCCchHHHHH
Q 044946 69 VSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKI--AYFQQLGLVGSDLGKFI 123 (365)
Q Consensus 69 ~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l--~fL~~lGl~~~~i~~ll 123 (365)
+++||.+.|++.....+--..+ -....+.++-|-+ +.|+++|+...||-+++
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F---~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINF---DREQLTEDMMPDINNSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH---HHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHH---HHccCCHHHHhhCCHHHHHHcCCchhhHHHHH
Confidence 5677777777765544322111 0112222233322 36677777655544443
No 25
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=60.42 E-value=7.5 Score=24.27 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFL 283 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~ 283 (365)
++.|+-|.++||+++++.+.+..+- . ++..-++||.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~----~---n~e~A~~~L~ 40 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCN----W---DLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHT----S---CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----c---CHHHHHHHHH
Confidence 3567888899999998887766531 1 2445566665
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=59.42 E-value=9.9 Score=25.05 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHhCC-CHHHHHHHHHhcCcccccCHHHHHHHHHHHHH
Q 044946 237 EKTFDRKLDLFRSYGF-SKEECIEMIRTAPRLLSASEERLKSGLDFFLK 284 (365)
Q Consensus 237 ~~~l~~~v~fL~~~G~-s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~ 284 (365)
++..+.+++-|.++|| +++.+...++.+- .++..-++||.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG-------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT-------SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 4456667777777777 6666555444221 135555666653
No 27
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=57.31 E-value=13 Score=23.69 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHH
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIR 262 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~ 262 (365)
.++..|+-|.++||+.+++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 367788999999999999987665
No 28
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=56.63 E-value=2.3 Score=43.34 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=21.1
Q ss_pred cCCCCchHHHHHHH------h--ccccchhHHHHHHHhccCCCchHHHHHHH
Q 044946 112 LGLVGSDLGKFISN------L--ERKLIPCVEILKKILAEDSNNEDLIRVIR 155 (365)
Q Consensus 112 lGl~~~~i~~ll~~------~--~~~l~p~v~fL~~~g~~~~~~~~v~~~l~ 155 (365)
.|++.++|..|-.. + ...+.|.+. +..|++ .++|.+|-.
T Consensus 490 ~gls~~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~gls---~~qVVaIAs 536 (1047)
T 3ugm_A 490 HGLTPDQVVAIASNIGGKQALATVQRLLPVLC--QAHGLT---PDQVVAIAS 536 (1047)
T ss_dssp SCCCSHHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTCCC---SHHHHHHHS
T ss_pred cCCCHHHHHHHHhccchHHHHHHHHHhhhhhc--cccCCC---HHHhhhhhc
Confidence 67777777776654 1 122333333 355566 666666543
No 29
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=56.55 E-value=13 Score=22.46 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhc
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTA 264 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~ 264 (365)
+..|+-|.++||++++..+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456777888888888877665543
No 30
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.18 E-value=15 Score=23.38 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=26.5
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
++...|.-| -++||+++++.++++.. .+++..++||-+
T Consensus 8 ~~~~~v~~L-~~MGF~~~~a~~AL~~~------~n~e~A~~~L~~ 45 (47)
T 2ekk_A 8 VNQQQLQQL-MDMGFTREHAMEALLNT------STMEQATEYLLT 45 (47)
T ss_dssp SCHHHHHHH-HHHHCCHHHHHHHHHHS------CSHHHHHHHHHT
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHc------CCHHHHHHHHHc
Confidence 456677777 55888888888877653 267777777643
No 31
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.24 E-value=13 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 044946 240 FDRKLDLFRSYGFSKEECIEMIR 262 (365)
Q Consensus 240 l~~~v~fL~~~G~s~~ev~~~i~ 262 (365)
...+|+-|.++||+++++.+.+.
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 45668999999999999988765
No 32
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.11 E-value=18 Score=26.35 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhC
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIE 287 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg 287 (365)
..+|+-|.++||+++++.+.++..- .++..-++||.+..|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 5678889999999999988877432 237788999987666
No 33
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.62 E-value=22 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.505 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKI 286 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~m 286 (365)
...|+-|.++||+++++.+.++.+-. ++..-++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 56678888999999999888886522 3677788888654
No 34
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=52.42 E-value=51 Score=25.66 Aligned_cols=96 Identities=6% Similarity=0.020 Sum_probs=58.1
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCccee-c--Cc----------
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILF-A--DV---------- 98 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~-~--~~---------- 98 (365)
++..|.-| -++||+...+.++++.. ...+++..++||....=. .++ ..|..+. + +.
T Consensus 3 d~~~l~~L-~~MGF~~~~a~~AL~~t----~n~~~e~A~~wL~~~~~d-~di-----~epl~~~~~~s~~~~~~~~l~~~ 71 (126)
T 2lbc_A 3 DESSVMQL-AEMGFPLEACRKAVYFT----GNMGAEVAFNWIIVHMEE-PDF-----AEPLTMPGYGGAASAGASVFGAS 71 (126)
T ss_dssp CTHHHHHH-HTTSSCCHHHHHHHHHH----TSCCHHHHHHHHHHGGGC-SSS-----SCTTCCSSCCSSSSSCCCCSTTS
T ss_pred CHHHHHHH-HHcCCCHHHHHHHHHHc----CCCCHHHHHHHHHHhccc-ccc-----cccccccccccccccchhhhccc
Confidence 56678888 66999999999988764 113688889998753211 111 1121110 0 00
Q ss_pred --c-CcHHHHHHHHHHcCCCCchHHHHHHHhccccchhHHHHH
Q 044946 99 --N-KTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILK 138 (365)
Q Consensus 99 --~-~~l~p~l~fL~~lGl~~~~i~~ll~~~~~~l~p~v~fL~ 138 (365)
+ ..-...++-|.++|++.....+.+.....++...++||.
T Consensus 72 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~ 114 (126)
T 2lbc_A 72 GLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIF 114 (126)
T ss_dssp SCCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0 012456788888999987777777665455555556554
No 35
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=52.18 E-value=25 Score=24.80 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCHHHHHHHHhhcccCCCCCC--chhHHHHHHhCCCChHHHHHHHH
Q 044946 36 LNYLIETVNIPKSRALVISNQFSRIKTLEK--PQTVSQFLHSVGFSDTHIQLAVH 88 (365)
Q Consensus 36 v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~--~~~~~~~L~~lG~s~~~i~~li~ 88 (365)
++|+ -++|++.....+....+-.-.-.++ ++-.-+.|+++|+...||.+++.
T Consensus 6 f~FF-l~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 6 FEFF-LNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHH-HHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHH-HHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 3677 5699999988887665411110011 12235789999999888887764
No 36
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=50.79 E-value=18 Score=24.03 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHH
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIR 262 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~ 262 (365)
-.+..|+-|.++||+++++.+.+.
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHH
Confidence 456788999999999999987765
No 37
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=50.57 E-value=13 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHH
Q 044946 238 KTFDRKLDLFRSYGF-SKEECIEMIR 262 (365)
Q Consensus 238 ~~l~~~v~fL~~~G~-s~~ev~~~i~ 262 (365)
+..+.+++-|.++|| +++.+.+.++
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445666777777777 6655554444
No 38
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.86 E-value=30 Score=22.83 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHcCCCCch-HHHHHHHhccccchhHHHHHH
Q 044946 101 TLKPKIAYFQQLGLVGSD-LGKFISNLERKLIPCVEILKK 139 (365)
Q Consensus 101 ~l~p~l~fL~~lGl~~~~-i~~ll~~~~~~l~p~v~fL~~ 139 (365)
...+.++-|+++|+++.+ ..+.|.....++...+++|-+
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 334455555555555443 233333344444444444433
No 39
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=48.74 E-value=24 Score=23.07 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=10.0
Q ss_pred hhHHHHHHhCCC-ChHHHHHHH
Q 044946 67 QTVSQFLHSVGF-SDTHIQLAV 87 (365)
Q Consensus 67 ~~~~~~L~~lG~-s~~~i~~li 87 (365)
++.++-|.++|| +.....+.+
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL 34 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQAL 34 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH
Confidence 444555555555 444333433
No 40
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=48.14 E-value=14 Score=26.28 Aligned_cols=39 Identities=10% Similarity=0.334 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHH
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLK 284 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~ 284 (365)
..+++|+-|.++||+++++...++.+= .++..-++||.+
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 357788999999999999988877532 246677888885
No 41
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.93 E-value=17 Score=24.94 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
.+.|+.|.++||+++++.+.++.+= .++..-++||.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 4567888999999999988776542 1477778888864
No 42
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.32 E-value=39 Score=23.89 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=21.2
Q ss_pred hHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 35 FLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 35 ~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
.|.-| .++||+++++..+++.. ..+++..++||.+
T Consensus 32 ~I~~L-~eMGF~r~~a~~AL~~~-----~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 32 QIQKL-VAMGFDRTQVEVALAAA-----DDDLTVAVEILMS 66 (73)
T ss_dssp HHHHH-HTTTCCHHHHHHHHHHH-----TSCHHHHHHHHHT
T ss_pred HHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 55666 45677777776666553 2456666666653
No 43
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=46.03 E-value=14 Score=24.24 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=21.4
Q ss_pred hhHHHHHHhCCC-ChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcC
Q 044946 67 QTVSQFLHSVGF-SDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLG 113 (365)
Q Consensus 67 ~~~~~~L~~lG~-s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lG 113 (365)
+..++-|.++|| +.....+.+..+ ..++...++||.+.+
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHcC
Confidence 445666777777 555555554432 124555666665543
No 44
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.00 E-value=45 Score=22.71 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=22.9
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
+..+|+-| .++||+++++.++++.. ..+++..++||.+
T Consensus 9 ~~~~I~~L-~~MGF~~~~a~~AL~~~-----~~nve~A~e~L~~ 46 (63)
T 1wji_A 9 DEKALKHI-TEMGFSKEASRQALMDN-----GNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHH-HTTTCCHHHHHHHHHHT-----TSCHHHHHHHHHH
T ss_pred CHHHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 44566666 45777777766665543 2456666666654
No 45
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.82 E-value=16 Score=25.00 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=28.7
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
.+.+|+-| -++||+.+++.++++.. ..+++..++||-+
T Consensus 19 e~e~V~~L-vsMGFs~~qA~kALKat-----~~NvErAaDWLFS 56 (63)
T 1wgn_A 19 ERQCVETV-VNMGYSYECVLRAMKKK-----GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHH-HHHHCCHHHHHHHHHHH-----CSCHHHHHHHHHH
T ss_pred hHHHHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 35578888 57889988888888763 4678888888754
No 46
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=45.15 E-value=43 Score=23.08 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=27.9
Q ss_pred HHHHHHHHH-HhCCCHHHHHHHHHhcCccc--------ccCHHHHHHHHHHHHHhhCCChhhHhh
Q 044946 240 FDRKLDLFR-SYGFSKEECIEMIRTAPRLL--------SASEERLKSGLDFFLKKIEFGKAVLVR 295 (365)
Q Consensus 240 l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL--------~~s~e~l~~k~~fL~~~mg~~~~~i~~ 295 (365)
+..++..++ +.|++.+++++.+.-.+.-+ ..+.+.+..-.+.|.+.+|++.++++.
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~~ 75 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHHc
Confidence 344444444 45555555554443222211 123444555555666666888777653
No 47
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=44.78 E-value=19 Score=29.36 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCc
Q 044946 51 LVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPT 92 (365)
Q Consensus 51 ~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~ 92 (365)
...+.+++++.+++.+.++++.|..+|+++.++..++.-+|.
T Consensus 75 l~Yl~~F~k~k~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~ 116 (152)
T 2c35_A 75 LNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPE 116 (152)
T ss_dssp HHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHHHHHHHCCS
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHhccCCCC
Confidence 344566666666677778888888899999999999888886
No 48
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.59 E-value=36 Score=23.23 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKI 286 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~m 286 (365)
...|+-+.++||++++..+.++.... ++...+|||-..+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~-------NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGE-------NIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCS-------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 55688888999999999888775433 4677788877553
No 49
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=43.39 E-value=34 Score=23.33 Aligned_cols=45 Identities=9% Similarity=0.241 Sum_probs=30.8
Q ss_pred HHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCch
Q 044946 178 LKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDS 222 (365)
Q Consensus 178 L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~ 222 (365)
-+.+|++...+.+++...+.-+..+++..+...+..+++|+.++.
T Consensus 7 A~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 356899999999998766622223555556666677788887763
No 50
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=43.22 E-value=1.1e+02 Score=25.20 Aligned_cols=71 Identities=15% Similarity=0.066 Sum_probs=40.6
Q ss_pred HHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHh-ccCCCchhhHhHHHHHHhccChhhHH-HHHHHHHHhCC
Q 044946 175 IEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLD-MGFTTDSRMFVHGLDALCRLSEKTFD-RKLDLFRSYGF 252 (365)
Q Consensus 175 v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~-lG~~~~~~~~~~~~~~l~~~s~~~l~-~~v~fL~~~G~ 252 (365)
..-|+.-||+.+.|...+...+ ..+........+.+ +|- ....+..+.+ +.+.||..-||
T Consensus 90 ~~eL~~KGI~~~~I~~al~~~~-----~~de~e~a~~l~~Kk~~~-------------~~~~~~~~~~~K~~~~L~rrGF 151 (177)
T 3e3v_A 90 KLNLSKKGIDDNIAEDALILYT-----DKLQVEKGVTLAEKLANR-------------YSHDSYRNKQNKIKQSLLTKGF 151 (177)
T ss_dssp HHHHHTTTCCHHHHHHHHTTSC-----HHHHHHHHHHHHHHHHHH-------------TTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHhCC-----chhHHHHHHHHHHHHHhh-------------ccCCChHHHHHHHHHHHHHCCC
Confidence 3468889999999988775421 11222222222221 110 0111222333 44679999999
Q ss_pred CHHHHHHHHHh
Q 044946 253 SKEECIEMIRT 263 (365)
Q Consensus 253 s~~ev~~~i~~ 263 (365)
+.+.|..++..
T Consensus 152 ~~~~I~~vl~~ 162 (177)
T 3e3v_A 152 SYDIIDTIIQE 162 (177)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999887764
No 51
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.86 E-value=29 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.410 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 242 RKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 242 ~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
..|+-|.++||+++++.+.++.+-. .++..-++||.+.
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhC
Confidence 3567778888888888877665332 2466777887753
No 52
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.35 E-value=39 Score=25.62 Aligned_cols=44 Identities=14% Similarity=0.414 Sum_probs=31.4
Q ss_pred ccChhhHHHHHHHHHHh-CCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHH
Q 044946 234 RLSEKTFDRKLDLFRSY-GFSKEECIEMIRTAPRLLSASEERLKSGLDFFLK 284 (365)
Q Consensus 234 ~~s~~~l~~~v~fL~~~-G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~ 284 (365)
..++..++++|+.|.++ ||+++++...+..+=. .+...+++|.+
T Consensus 33 ~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lle 77 (104)
T 1wj7_A 33 DHNDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLE 77 (104)
T ss_dssp HSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 33455678999999988 9999999877654322 25666777775
No 53
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=42.00 E-value=26 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.424 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
..+|+.|.++||+++++.+.++.+- .++..-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 4667888999999999988877532 2466778888753
No 54
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=41.73 E-value=1.5e+02 Score=24.44 Aligned_cols=61 Identities=8% Similarity=0.178 Sum_probs=37.9
Q ss_pred eecchhHHHHHHHHHhccCCCch---hhHhHHHHHHhccChhhHHHHHHHHHHhCCCHHHHHHHHHh
Q 044946 200 CFNDLKLRQLVLRVLDMGFTTDS---RMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRT 263 (365)
Q Consensus 200 ~~s~~~i~~~v~~l~~lG~~~~~---~~~~~~~~~l~~~s~~~l~~~v~fL~~~G~s~~ev~~~i~~ 263 (365)
+++++.+..+++.|.+.|+-.+. ..+++.-......++..++. -|+.-|++.+.|...+..
T Consensus 46 g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~---eL~~KGI~~~~I~~al~~ 109 (177)
T 3e3v_A 46 DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKL---NLSKKGIDDNIAEDALIL 109 (177)
T ss_dssp TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHH---HHHTTTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHH---HHHHcCCCHHHHHHHHHh
Confidence 34566788889999999987663 44444332222334433333 366789998888776653
No 55
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.71 E-value=51 Score=22.27 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=28.2
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
++...|.-| -++||+++++.++++.. ..+++..++||-+
T Consensus 8 ~~~~~v~~L-~~MGF~~~~a~~AL~~t-----~~nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTI-VSMGFSRDQALKALRAT-----NNSLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHH-HHHTCCHHHHHHHHHHT-----TSCSHHHHHHHHH
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 456678888 56888888888887663 2467778888754
No 56
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=40.21 E-value=38 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=14.4
Q ss_pred CCchhHHHHHHhCCCChHHHHHHHH
Q 044946 64 EKPQTVSQFLHSVGFSDTHIQLAVH 88 (365)
Q Consensus 64 ~~~~~~~~~L~~lG~s~~~i~~li~ 88 (365)
..++.-++-|.++||+.+++.+.+.
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHH
Confidence 3445556666666666666666554
No 57
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=39.77 E-value=26 Score=22.24 Aligned_cols=16 Identities=6% Similarity=0.358 Sum_probs=8.0
Q ss_pred cHHHHHHHHHHcCCCC
Q 044946 101 TLKPKIAYFQQLGLVG 116 (365)
Q Consensus 101 ~l~p~l~fL~~lGl~~ 116 (365)
.....++-|.++|+++
T Consensus 6 ~~~~~i~~L~~MGF~d 21 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFD 21 (46)
T ss_dssp HTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCc
Confidence 3444555555555543
No 58
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=35.97 E-value=1.4e+02 Score=22.75 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=30.5
Q ss_pred cCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCc
Q 044946 43 VNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPT 92 (365)
Q Consensus 43 ~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~ 92 (365)
--.+..++..++.... ..+-.+-+.+|++..+|..+-..+|.
T Consensus 20 ~~~t~~~l~~Ia~~LG--------~~Wk~LAR~LGlse~dId~I~~~~p~ 61 (115)
T 2o71_A 20 SSPSDRQINQLAQRLG--------PEWEPMVLSLGLSQTDIYRCKANHPH 61 (115)
T ss_dssp SCCCHHHHHHHHHHCC--------TTHHHHHHHTTCCHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHh--------hhHHHHHHHcCCCHHHHHHHHHHCCC
Confidence 3445667777765541 23666777899999999999999993
No 59
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.34 E-value=83 Score=21.35 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhC
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSV 76 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~l 76 (365)
.+..+|+-| -++||+++++.++++.. ...+++..++||-+.
T Consensus 8 ~~~~~v~~L-~~MGF~~~~a~~AL~~t----~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 8 AELTALESL-IEMGFPRGRAEKALALT----GNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCHHHHH-HTTTCCHHHHHHHHHHH----TSCCHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHh----cCCCHHHHHHHHHhC
Confidence 356678888 56899998888877643 124688888888653
No 60
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.97 E-value=74 Score=21.66 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCC
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVG 77 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG 77 (365)
++..+|+-| -+.||+++.+.+++... ...+++..++||-+..
T Consensus 8 ~~e~~v~~L-~~MGF~~~~a~~AL~~t----~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 8 SSPSLLEPL-LAMGFPVHTALKALAAT----GRKTAEEALAWLHDHC 49 (64)
T ss_dssp CSCSSHHHH-HHTSCCHHHHHHHHHHH----TSCCHHHHHHHHHHHS
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHh----CCCCHHHHHHHHHhCC
Confidence 456688888 55999999888887653 1137888888887543
No 61
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.44 E-value=64 Score=23.38 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=10.4
Q ss_pred hhHHHHHHhcCCCHHHHHHHHhh
Q 044946 34 IFLNYLIETVNIPKSRALVISNQ 56 (365)
Q Consensus 34 ~~v~yL~~~~Gls~~~~~~i~~~ 56 (365)
..|+-| -++||+++++.++++.
T Consensus 31 e~I~~L-v~MGF~~~~A~~AL~~ 52 (83)
T 1veg_A 31 ESINQL-VYMGFDTVVAEAALRV 52 (83)
T ss_dssp HHHHHH-HHHSCCHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHHHH
Confidence 344444 3355555555554443
No 62
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=34.05 E-value=78 Score=22.39 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=6.9
Q ss_pred ChhhHHHHHHHHHHhC
Q 044946 236 SEKTFDRKLDLFRSYG 251 (365)
Q Consensus 236 s~~~l~~~v~fL~~~G 251 (365)
|+.+++.-++.|.+-|
T Consensus 37 S~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 37 SIYQVRLYLEQLHDVG 52 (77)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3344444444444443
No 63
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=33.86 E-value=13 Score=23.76 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHh
Q 044946 242 RKLDLFRSYGFSKEECIEMIRT 263 (365)
Q Consensus 242 ~~v~fL~~~G~s~~ev~~~i~~ 263 (365)
..|+-|.++||++..+.+.+..
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a 27 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFA 27 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4566677788888887765443
No 64
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.52 E-value=70 Score=22.40 Aligned_cols=38 Identities=5% Similarity=0.009 Sum_probs=21.6
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
++..|.-| -++||+++++.++++.. ..+++..+++|-+
T Consensus 29 ~~~~v~~L-~~MGF~~~~a~~AL~~t-----~~nve~Ave~L~~ 66 (73)
T 1wiv_A 29 DQSSVDTL-LSFGFAEDVARKALKAS-----GGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHH-HHHTCCHHHHHHHHHHT-----TSCHHHHHHHHHH
T ss_pred CHHHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHh
Confidence 34456666 45666666666665542 2356666666654
No 65
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.38 E-value=40 Score=22.28 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=28.8
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCCC
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVG 116 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~~ 116 (365)
...++-|.++||+.+-+.+.+... -++.|++.++||..++.+.
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~T-------g~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQT-------GSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-------TSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh-------CcccHHHHHHHHHHhcCCC
Confidence 344777778888887666665532 2345888888888777654
No 66
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=32.37 E-value=15 Score=34.60 Aligned_cols=234 Identities=12% Similarity=0.099 Sum_probs=108.6
Q ss_pred hcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh-CCCChHHHHHHHHhCCcceecCccCcHHHHHHHHH-HcCCCCchH
Q 044946 42 TVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS-VGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQ-QLGLVGSDL 119 (365)
Q Consensus 42 ~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~-lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~-~lGl~~~~i 119 (365)
.+|+|++++.+|....-.=-..+.+......|.. .|++++||..|-...---=.. + .+.....-|. ..|++.++|
T Consensus 173 a~~Ls~~qVVaIAsn~GGkQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQAL--e-aV~~llpvl~~~~gls~aqV 249 (463)
T 4hpz_A 173 DHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL--E-TVQRLLPVLCQDHGLTPQQV 249 (463)
T ss_dssp HHCCCHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHH--H-HHHHHHHHHHHHSCCCHHHH
T ss_pred hcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhhccccCCHHHHHHHhhccccHHHH--H-HHHhhhhhhhhhccCCHHHH
Confidence 4788888888876432000000122233444443 788888887765432110000 0 1122222333 468888888
Q ss_pred HHHHHH-----hccccchhHHHHHH-HhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHHH-cCCChhhHHHHh
Q 044946 120 GKFISN-----LERKLIPCVEILKK-ILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKS-CGIVGSQLSMLL 192 (365)
Q Consensus 120 ~~ll~~-----~~~~l~p~v~fL~~-~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~-lG~~~~~i~~ll 192 (365)
..+-.. --+.+..-.--|.. .|++ .++|.++-.....== -.+ .++.-.-.|+. .|++.++|..+-
T Consensus 250 VaIAsn~GGkQALeaV~~llP~L~~~~gls---~~qVVaIAsN~GGkQ---ALe--aV~~l~p~Lr~~~~ls~~qVVaIA 321 (463)
T 4hpz_A 250 VAIASNIGGKQALETVQRLLPVLCQDHGLT---PDQVVAIASNDGGKQ---ALE--TVQRLLPVLCQDHGLTPEQVVAIA 321 (463)
T ss_dssp HHHHSSTTHHHHHHHHHHHHHHHHHTTCCC---HHHHHHHHTSTTHHH---HHH--HHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhchhhhhccCCC---HHHhhhhhcCccHHH---HHH--HHHHHhHHHHhhcCCCHHHhhhhh
Confidence 877664 11112222233444 5777 788877654331100 011 34444455665 799999887543
Q ss_pred hhcCccceecchhHHHHHHHHHh-ccCCCchhhHhHHHHHHhccC----hhhHHHHHHHHH-HhCCCHHHHHHHHHhcCc
Q 044946 193 VRLPRLFCFNDLKLRQLVLRVLD-MGFTTDSRMFVHGLDALCRLS----EKTFDRKLDLFR-SYGFSKEECIEMIRTAPR 266 (365)
Q Consensus 193 ~~~P~~l~~s~~~i~~~v~~l~~-lG~~~~~~~~~~~~~~l~~~s----~~~l~~~v~fL~-~~G~s~~ev~~~i~~~P~ 266 (365)
...-.- .-.+.+....-.|.+ .|++.+...-+. ...+ -+.+..-.-.|. ..|++..+|..|-...-.
T Consensus 322 sN~GGk--QALeaV~~llp~Lr~~~~ls~~qVvaIA-----sn~GGkQALeaV~~llpvL~~a~gls~aqVVaIAsn~GG 394 (463)
T 4hpz_A 322 SNGGGK--QALETVQRLLPVLCQAHGLTPDQVVAIA-----SHDGGKQALETVQRLLPVLCQDHGLTPAQAVAIANNNGG 394 (463)
T ss_dssp SSTTHH--HHHHHHHHHHHHHHHHSCCCHHHHHHHH-----TSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSSSC
T ss_pred cCcchH--HHHHHHHHhhhhcchhccCCHHHhHhhh-----hcCccHHHHHHHHHHhHHHHHHhCCCHHHhhhhhccCcc
Confidence 221100 001222223333332 465554311000 0000 123444455566 479999988876432111
Q ss_pred ccccCHHHHHHHHHHHHHhhCCChhhHhh
Q 044946 267 LLSASEERLKSGLDFFLKKIEFGKAVLVR 295 (365)
Q Consensus 267 iL~~s~e~l~~k~~fL~~~mg~~~~~i~~ 295 (365)
=- -.|.+....--|....|++..+|+.
T Consensus 395 kQ--ALeaV~~llpvL~~a~gls~~qVVa 421 (463)
T 4hpz_A 395 KQ--ALETVQRLLPVLCQDHGLTPDQVVA 421 (463)
T ss_dssp HH--HHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HH--HHHHHHHhchhhhhhccCCHHHhhh
Confidence 00 0133444444455445888777654
No 67
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.72 E-value=39 Score=23.82 Aligned_cols=41 Identities=7% Similarity=0.327 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhC
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIE 287 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg 287 (365)
...|+-|.++||+++.+.+.++.+-. ..+..-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 45678888999999999888774432 137788999997643
No 68
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=31.56 E-value=18 Score=29.33 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=25.4
Q ss_pred HHHhccChhhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044946 230 DALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTA 264 (365)
Q Consensus 230 ~~l~~~s~~~l~~~v~fL~~~G~s~~ev~~~i~~~ 264 (365)
+.....+.+.+++.|--|.+-|++.++|+-+++..
T Consensus 25 P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 25 PKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 33345566777777777788888888888877765
No 69
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=31.49 E-value=46 Score=22.33 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=7.6
Q ss_pred cHHHHHHHHHHcCCC
Q 044946 101 TLKPKIAYFQQLGLV 115 (365)
Q Consensus 101 ~l~p~l~fL~~lGl~ 115 (365)
.....++-|.++|++
T Consensus 16 ~~~~qi~~L~~MGF~ 30 (58)
T 1wr1_B 16 RYEHQLRQLNDMGFF 30 (58)
T ss_dssp HTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 344455555555554
No 70
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.87 E-value=19 Score=29.47 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=26.9
Q ss_pred HHHhccChhhHHHHHHHHHHhCCCHHHHHHHHHhcCcc
Q 044946 230 DALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRL 267 (365)
Q Consensus 230 ~~l~~~s~~~l~~~v~fL~~~G~s~~ev~~~i~~~P~i 267 (365)
+.....+.+.+++.|--|.+-|++.++|+.+++..-.|
T Consensus 23 P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gi 60 (158)
T 3j20_Q 23 PIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60 (158)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCC
Confidence 33345566777777777788888888888887765444
No 71
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=30.08 E-value=71 Score=21.81 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=29.1
Q ss_pred HHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCch
Q 044946 177 YLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDS 222 (365)
Q Consensus 177 ~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~ 222 (365)
.-+..|++...|.+++...|. .+++.-+.+.+..+++|+.++.
T Consensus 15 iA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 15 VALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 345689999999998866554 2455555666677788887653
No 72
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=30.08 E-value=2.6e+02 Score=23.81 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=40.8
Q ss_pred HHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHh-ccCCCchhhHhHHHHHHhccChh-hHHHHHHHHHHhCC
Q 044946 175 IEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLD-MGFTTDSRMFVHGLDALCRLSEK-TFDRKLDLFRSYGF 252 (365)
Q Consensus 175 v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~-lG~~~~~~~~~~~~~~l~~~s~~-~l~~~v~fL~~~G~ 252 (365)
..-|+.-|++.+.|...+...+ ..+........+.+ +| .....+.. .-++.+.||..-||
T Consensus 133 ~~eL~~KGI~~~~I~~al~~~~-----~~~e~e~a~~l~~Kk~~-------------~~~~~~~~~~k~K~~~~L~rrGF 194 (221)
T 3d5l_A 133 RQHLRQKGIGESDIDDALTQFT-----PEVQAELAKKLALKLFR-------------RYRNQPERRREQKVQQGLTTKGF 194 (221)
T ss_dssp HHHHHHTTCCHHHHHHHGGGCC-----HHHHHHHHHHHHHHHHH-------------HTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHh-------------hccCCChHHHHHHHHHHHHhCCC
Confidence 3568889999999988776531 11122222222221 11 00111222 24566789999999
Q ss_pred CHHHHHHHHHh
Q 044946 253 SKEECIEMIRT 263 (365)
Q Consensus 253 s~~ev~~~i~~ 263 (365)
+.+.|..++..
T Consensus 195 s~~~I~~vl~~ 205 (221)
T 3d5l_A 195 SSSVYEMIKDE 205 (221)
T ss_dssp CHHHHHHHTTC
T ss_pred CHHHHHHHHHh
Confidence 99999877653
No 73
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.69 E-value=43 Score=23.70 Aligned_cols=41 Identities=12% Similarity=0.524 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHhCCC-HHHHHHHHHhcCcccccCHHHHHHHHHHHHH
Q 044946 237 EKTFDRKLDLFRSYGFS-KEECIEMIRTAPRLLSASEERLKSGLDFFLK 284 (365)
Q Consensus 237 ~~~l~~~v~fL~~~G~s-~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~ 284 (365)
++..+.+|+-|+++||+ ++.+.+.++. .--++..-++||..
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~-------t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVA-------TDGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHH-------TTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHH-------hCCCHHHHHHHHHh
Confidence 34566777777777774 4554444332 22235556666663
No 74
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.27 E-value=94 Score=21.09 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=28.7
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhC
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSV 76 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~l 76 (365)
++..+|+-| -.+||+++++.++++.. ...+++..+++|-+.
T Consensus 18 ~~e~~i~~L-~~MGF~~~~a~~AL~~t----~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 18 KHGSALDVL-LSMGFPRARAQKALAST----GGRSVQTACDWLFSH 58 (64)
T ss_dssp SCCCHHHHH-HHHTCCHHHHHHHHHHT----TTSCHHHHHHHHHSC
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHc----CCCCHHHHHHHHHhC
Confidence 345678888 55899998888887653 112688888888654
No 75
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.88 E-value=88 Score=19.12 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHH
Q 044946 239 TFDRKLDLFRSYGFSKEECIEM 260 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~ 260 (365)
.++.-+.-|++-||+++++..+
T Consensus 4 alkselqalkkegfspeelaal 25 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3556677788889999998754
No 76
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.33 E-value=60 Score=23.45 Aligned_cols=39 Identities=8% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKI 286 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~m 286 (365)
...|+-|.++||+++.+.+.++.+- .++..-++||.+.+
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~-------~nve~A~ewL~~~~ 68 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNH-------MSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 4567888899999999998877541 24777899999754
No 77
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.08 E-value=1.5e+02 Score=22.68 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCC
Q 044946 45 IPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKP 91 (365)
Q Consensus 45 ls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P 91 (365)
.+..++..++.... ..+-.+-+.+|++..+|..+-..+|
T Consensus 22 ~t~~~l~~Ia~~lG--------~~Wk~LAR~LGlse~dId~I~~~~p 60 (114)
T 2of5_A 22 PSDRQINQLAQRLG--------PEWEPMVLSLGLSQTDIYRCKANHP 60 (114)
T ss_dssp CCHHHHHHHHHTCC--------STHHHHHHTTTCCHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHh--------hhHHHHHHHcCCCHHHHHHHHHHCC
Confidence 45556666655431 2366677789999999999999999
No 78
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=26.91 E-value=1.5e+02 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=7.3
Q ss_pred HhcCCCHHHHHHHH
Q 044946 41 ETVNIPKSRALVIS 54 (365)
Q Consensus 41 ~~~Gls~~~~~~i~ 54 (365)
.++|++...+..++
T Consensus 12 ~~iGL~e~kaket~ 25 (187)
T 3tl4_X 12 SQVGFEDKKVKEIV 25 (187)
T ss_dssp HHTTCCHHHHHHHT
T ss_pred HHcCCChhHHHHHH
Confidence 44555555555443
No 79
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=26.89 E-value=59 Score=22.01 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=19.8
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhC
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTK 90 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~ 90 (365)
+.+++-|.++|+++.++.+++..-
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 567888889999999999888763
No 80
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=26.51 E-value=50 Score=27.84 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCc
Q 044946 49 RALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPT 92 (365)
Q Consensus 49 ~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~ 92 (365)
.+...+.+++.+.+++.+.++++.|.+.|+++.+++.++.-+|.
T Consensus 109 KTLeYl~rFsk~kn~Esa~elre~L~~~kL~efE~aqLaNL~Pe 152 (187)
T 1y14_A 109 NTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACD 152 (187)
T ss_dssp HHHHHHHHHCSCCSHHHHHHHHHHHHTTTCCHHHHHHHHHSCCS
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHcCcCCCC
Confidence 44445677777777778888899998999999999999988885
No 81
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=25.74 E-value=79 Score=25.57 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=13.1
Q ss_pred CchhHHHHHHhCCCChHHHHHHHHh
Q 044946 65 KPQTVSQFLHSVGFSDTHIQLAVHT 89 (365)
Q Consensus 65 ~~~~~~~~L~~lG~s~~~i~~li~~ 89 (365)
+++..+--|..-|++++||+-+++.
T Consensus 32 eVe~~I~klakkG~tpSqIG~iLRD 56 (151)
T 3u5c_N 32 SVIEQIVKYARKGLTPSQIGVLLRD 56 (151)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHhhhHHhc
Confidence 3444444455556666666655543
No 82
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.17 E-value=1.3e+02 Score=19.81 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=7.8
Q ss_pred hHHHHHHhCCCChHH
Q 044946 68 TVSQFLHSVGFSDTH 82 (365)
Q Consensus 68 ~~~~~L~~lG~s~~~ 82 (365)
+.++-|+++||.+.+
T Consensus 11 ~~L~~L~eMGF~D~~ 25 (54)
T 2cp8_A 11 ALMAHLFEMGFCDRQ 25 (54)
T ss_dssp HHHHHHHHHTCCCHH
T ss_pred HHHHHHHHcCCCcHH
Confidence 345555555554444
No 83
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.11 E-value=91 Score=22.59 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
.+.|+-|.++||+++.+.+.+..+ --.+...++||.+.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~-------n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN-------NMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHC
Confidence 677889999999999988776422 22478889999865
No 84
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.11 E-value=61 Score=22.47 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=6.9
Q ss_pred HHHHHHhCCCChHH
Q 044946 69 VSQFLHSVGFSDTH 82 (365)
Q Consensus 69 ~~~~L~~lG~s~~~ 82 (365)
.++-|+++||++.+
T Consensus 22 ql~qL~~MGF~d~~ 35 (67)
T 2dna_A 22 EMECLQAMGFVNYN 35 (67)
T ss_dssp HHHHHHHHTCCCHH
T ss_pred HHHHHHHcCCCcHH
Confidence 45555555554443
No 85
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.95 E-value=72 Score=22.53 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=23.6
Q ss_pred CCchhHHHHHHhCCCC-hHHHHHHHHhCCcceecCccCcHHHHHHHHHH
Q 044946 64 EKPQTVSQFLHSVGFS-DTHIQLAVHTKPTILFADVNKTLKPKIAYFQQ 111 (365)
Q Consensus 64 ~~~~~~~~~L~~lG~s-~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~ 111 (365)
...+..++-|.++||+ +..+.+.+... ..++...++||-+
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLLG 67 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4456677778888874 34445555432 2346666666664
No 86
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=24.77 E-value=86 Score=25.38 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=12.7
Q ss_pred chhHHHHHHhCCCChHHHHHHHHhC
Q 044946 66 PQTVSQFLHSVGFSDTHIQLAVHTK 90 (365)
Q Consensus 66 ~~~~~~~L~~lG~s~~~i~~li~~~ 90 (365)
++..+--|..-|++++||+-+++..
T Consensus 35 Ve~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 35 VVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 3344444445555555555555433
No 87
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=24.61 E-value=64 Score=23.49 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=24.0
Q ss_pred chhHHHHHHhCCCChHHHHHHHHhCCcc
Q 044946 66 PQTVSQFLHSVGFSDTHIQLAVHTKPTI 93 (365)
Q Consensus 66 ~~~~~~~L~~lG~s~~~i~~li~~~P~l 93 (365)
...+-+|-+.+|+|+.+|..+-..||+=
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d 39 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQD 39 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCC
Confidence 4567788899999999999999999863
No 88
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.91 E-value=59 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRT 263 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~ 263 (365)
-..|.+++++|||-+||..++..
T Consensus 6 L~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 6 LKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 35678889999999999999863
No 89
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=23.74 E-value=1.2e+02 Score=19.74 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHhccCCCchhhHhHHHH
Q 044946 203 DLKLRQLVLRVLDMGFTTDSRMFVHGLD 230 (365)
Q Consensus 203 ~~~i~~~v~~l~~lG~~~~~~~~~~~~~ 230 (365)
..++.+.+..+..+||+.+..++.+.+.
T Consensus 7 D~rl~~al~qMl~MGF~negGWLt~LL~ 34 (52)
T 1q02_A 7 DPRLIESLSQMLSMGFSDEGGWLTRLLQ 34 (52)
T ss_dssp CHHHHHHHHHHHTTTCCCTTSHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCccccHHHHHHH
Confidence 4568889999999999988766655443
No 90
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=23.15 E-value=2.6e+02 Score=21.52 Aligned_cols=53 Identities=9% Similarity=0.244 Sum_probs=34.3
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHH-HcCCCCchHHHHHH
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQ-QLGLVGSDLGKFIS 124 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~-~lGl~~~~i~~ll~ 124 (365)
...-.+-+.+|++..+|..+-..+|. ++.......+..+. .-| ..+.+..++.
T Consensus 18 ~~Wk~LAR~LGlse~dId~Ie~~~p~----dl~eq~~~mL~~W~~r~G-~~ATv~~L~~ 71 (122)
T 3ezq_B 18 KDWRRLARQLKVSDTKIDSIEDRYPR----NLTERVRESLRIWKNTEK-ENATVAHLVG 71 (122)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHHHHCT-TTCCHHHHHH
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHhhC-CCchHHHHHH
Confidence 44667778999999999999999985 33334555565444 445 3444444433
No 91
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=21.90 E-value=26 Score=28.41 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=21.1
Q ss_pred hccChhhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044946 233 CRLSEKTFDRKLDLFRSYGFSKEECIEMIRTA 264 (365)
Q Consensus 233 ~~~s~~~l~~~v~fL~~~G~s~~ev~~~i~~~ 264 (365)
...+.+.+++.|--|.+-|++.++|+-+++..
T Consensus 26 ~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 26 FKLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 34455666666666667777777777666654
No 92
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.84 E-value=1.9e+02 Score=19.43 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=29.0
Q ss_pred HHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhhH
Q 044946 248 RSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVL 293 (365)
Q Consensus 248 ~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i 293 (365)
+.+|+|...|.+++...|.-...+.+..+...+... ++|+.++..
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~-~lgY~pn~~ 52 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVR-EHNYHPNAV 52 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHH-HHTCCCC--
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HhCCCccHH
Confidence 378999999999998877323355555444444444 689875543
No 93
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.27 E-value=92 Score=22.47 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhc
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTA 264 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~ 264 (365)
...|+-|.++||+++.+.+.++..
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t 53 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT 53 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
No 94
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=21.19 E-value=86 Score=23.74 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=26.1
Q ss_pred HhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCc
Q 044946 54 SNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPT 92 (365)
Q Consensus 54 ~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~ 92 (365)
++++..+ ++++...+++.|.++|+....+++++.-+|.
T Consensus 41 ~~kFsk~-~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P~ 78 (107)
T 1go3_F 41 LQKFAKL-DKEEAKKLVEELISLGIDEKTAVKIADILPE 78 (107)
T ss_dssp HHHHCCS-CHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC
T ss_pred HHHHhCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 4444444 3456666677777888888888888887775
No 95
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=21.18 E-value=67 Score=24.82 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.2
Q ss_pred CchhHHHHHHhCCCChHHHHHHHHhCCc
Q 044946 65 KPQTVSQFLHSVGFSDTHIQLAVHTKPT 92 (365)
Q Consensus 65 ~~~~~~~~L~~lG~s~~~i~~li~~~P~ 92 (365)
....+-.|-+.+|+++.+|..+-..||+
T Consensus 19 ~~~~wK~laR~LGlse~~Id~I~~d~~~ 46 (115)
T 3ezq_A 19 TLSQVKGFVRKNGVNEAKIDEIKNDNVQ 46 (115)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHcCCC
Confidence 4567788889999999999999998876
No 96
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=21.08 E-value=1.3e+02 Score=25.60 Aligned_cols=66 Identities=8% Similarity=0.156 Sum_probs=55.5
Q ss_pred cchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHHHcCCChhhHHHHhhhcCccceecc
Q 044946 130 LIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFND 203 (365)
Q Consensus 130 l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~~l~~s~ 203 (365)
|-.+++.|.++.-. -+.+..++...-... +++ ++++.|+-+-.-.|....++++..-+|..+...-
T Consensus 32 LP~kY~~L~e~F~~---ldtv~~ml~~R~~~~-Tf~----~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l~~ 97 (201)
T 1wlq_C 32 LPYKYQVLVEMFHS---MDTIVSMLHNRSETV-TFA----KVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQ 97 (201)
T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHHHTTCCC-BHH----HHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHH---HHHHHHHHHcCCccc-cHH----HHHHHHHHHhcCCcCHHHHHHHHHhccCceEEEe
Confidence 55678888888777 788999987776666 554 6999999999999999999999999999988763
No 97
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=20.75 E-value=2.5e+02 Score=21.09 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=27.4
Q ss_pred hccChhhHHHHHHHHHHhCCCHHHHHHHHHhcCc
Q 044946 233 CRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPR 266 (365)
Q Consensus 233 ~~~s~~~l~~~v~fL~~~G~s~~ev~~~i~~~P~ 266 (365)
...+++..+.-++.|.+.|+.+.++.+++.-+|.
T Consensus 45 sk~~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P~ 78 (107)
T 1go3_F 45 AKLDKEEAKKLVEELISLGIDEKTAVKIADILPE 78 (107)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC
T ss_pred hCCCHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 4455667777788888999999999999888885
No 98
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.61 E-value=1.8e+02 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=11.3
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhC
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTK 90 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~ 90 (365)
+..+--|..-|++++||+-+++..
T Consensus 34 ~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 34 ENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHhhHHHhcc
Confidence 333334444555555555555443
No 99
>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family; HET: CIT GOL; 1.65A {Burkholderia xenovorans}
Probab=20.44 E-value=3e+02 Score=21.32 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=42.4
Q ss_pred cCCChhhHHHHhhhcCccceecchhHHHHHHHH-----HhccCCCchhhHhHH-HHHHhccCh-hhHHHHHHHHHHhCCC
Q 044946 181 CGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRV-----LDMGFTTDSRMFVHG-LDALCRLSE-KTFDRKLDLFRSYGFS 253 (365)
Q Consensus 181 lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l-----~~lG~~~~~~~~~~~-~~~l~~~s~-~~l~~~v~fL~~~G~s 253 (365)
+|.-+..+..+-...|.++. .+....+.+ .+-|++...+.++.. ..+.. .. ..+.-.+.-.++.|.|
T Consensus 25 ~G~vP~~~~~l~~~~P~~~~----~~~~l~~~~~~~~~~~~~Ld~k~reLI~lavs~ng--C~~~Cl~~H~~~A~~~G~t 98 (141)
T 2qeu_A 25 MGGLPEALVQLAEYAPETFD----AYSRMRTTMLKSEADGAKLPLKYKHLILVVLDAIR--DEPIGIVNHTRAAMNAGLS 98 (141)
T ss_dssp HSSCCHHHHHHHHHCHHHHH----HHHHHHHHHTCCGGGTCSSCHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCC
T ss_pred HccchHHHHHHHHhCHHHHH----HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCC
Confidence 67666665554444555431 112222222 334566655433321 11222 23 5688888888999999
Q ss_pred HHHHHHHHHh
Q 044946 254 KEECIEMIRT 263 (365)
Q Consensus 254 ~~ev~~~i~~ 263 (365)
+++|..++..
T Consensus 99 ~eeI~eai~~ 108 (141)
T 2qeu_A 99 VDELIEGILL 108 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887543
No 100
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=20.43 E-value=84 Score=27.05 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=8.6
Q ss_pred HHHhCCCChHHHHHHHHhCC
Q 044946 72 FLHSVGFSDTHIQLAVHTKP 91 (365)
Q Consensus 72 ~L~~lG~s~~~i~~li~~~P 91 (365)
+|...|+.+.+++.+..-+|
T Consensus 166 LL~~~gLheFEiAqLANLcP 185 (221)
T 3hou_D 166 LLKSTGLHPFEVAQLGSLAC 185 (221)
T ss_dssp HHTTSCCCHHHHHHHHHSCC
T ss_pred HHHhcCCChHHhheecccCC
Confidence 33334444444444444443
No 101
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=20.30 E-value=80 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044946 238 KTFDRKLDLFRSYGFSKEECIEMIRTA 264 (365)
Q Consensus 238 ~~l~~~v~fL~~~G~s~~ev~~~i~~~ 264 (365)
...+.+|+-|.++||+++++...++++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456889999999999999998877765
No 102
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=20.08 E-value=2e+02 Score=21.92 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=38.2
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHH-HcCCCCchHHHHHHH
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQ-QLGLVGSDLGKFISN 125 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~-~lGl~~~~i~~ll~~ 125 (365)
..+-.|.+.+|+++.+|..+-..+|+=+. ......+.-+. .-|-..+.+..++..
T Consensus 26 ~~WK~~aRkLGLse~~Id~Ie~~~~r~l~----Eq~yqmLr~W~~~~G~~~Atv~~L~~a 81 (112)
T 1ich_A 26 LRWKEFVKRLGLSDHEIDRLELQNGRCLR----EAQYSMLATWRRRTPRREATLELLGRV 81 (112)
T ss_dssp TTHHHHHHHHTCCHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCcCChH----HHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 45788889999999999999988876432 23455555333 467666666666554
Done!