Query 044946
Match_columns 365
No_of_seqs 195 out of 1189
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 14:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044946.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044946hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 76.5 2.6 0.00019 26.2 5.1 40 31-75 11-50 (51)
2 d1oqya1 a.5.2.1 (A:160-200) DN 75.2 1.1 7.7E-05 26.8 2.7 26 239-264 3-28 (41)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 74.3 1.4 0.0001 26.2 3.0 38 31-74 3-40 (43)
4 d2csba4 a.60.2.4 (A:465-519) T 57.9 15 0.0011 21.6 5.5 46 38-86 5-51 (55)
5 d2g3qa1 a.5.2.1 (A:1339-1381) 56.6 3.8 0.00028 24.2 2.5 24 243-266 7-30 (43)
6 d1cuka1 a.5.1.1 (A:156-203) DN 56.3 18 0.0013 21.9 6.1 40 238-278 3-43 (48)
7 d1oqya1 a.5.2.1 (A:160-200) DN 51.2 6.7 0.00049 23.0 3.1 26 65-90 3-28 (41)
8 d2crna1 a.5.2.1 (A:8-58) Suppr 48.0 16 0.0012 22.3 4.7 40 32-76 2-41 (51)
9 d1dgsa1 a.60.2.2 (A:401-581) N 45.6 61 0.0044 25.0 9.4 100 109-221 77-179 (181)
10 d1whca_ a.5.2.1 (A:) UBA/UBX 3 45.4 25 0.0018 22.5 5.6 41 31-76 8-48 (64)
11 d2hsga1 a.35.1.5 (A:2-58) Gluc 44.8 20 0.0014 22.4 4.9 43 177-222 7-49 (57)
12 d1wjia_ a.5.2.1 (A:) Tudor dom 43.7 24 0.0017 22.4 5.3 38 32-75 9-46 (63)
13 d1uxda_ a.35.1.5 (A:) Fructose 43.6 13 0.00097 23.4 3.9 45 178-222 7-51 (59)
14 d1wgna_ a.5.2.1 (A:) Ubiquitin 43.1 7.4 0.00054 25.1 2.6 38 241-285 20-57 (63)
15 d1wjia_ a.5.2.1 (A:) Tudor dom 42.9 23 0.0017 22.5 5.1 38 67-112 10-47 (63)
16 d1vg5a_ a.5.2.1 (A:) Rhomboid 41.9 9.1 0.00066 25.4 3.0 38 241-285 30-67 (73)
17 d1veka_ a.5.2.1 (A:) Ubiquitin 41.3 19 0.0014 24.4 4.7 42 31-77 28-69 (84)
18 d1wiva_ a.5.2.1 (A:) Ubiquitin 40.9 13 0.00094 24.6 3.6 38 241-285 30-67 (73)
19 d2cwqa1 a.152.1.4 (A:1-117) Hy 39.6 22 0.0016 25.6 5.2 86 170-262 4-96 (117)
20 d1wgna_ a.5.2.1 (A:) Ubiquitin 38.3 17 0.0012 23.2 3.8 37 33-75 20-56 (63)
21 d1wiva_ a.5.2.1 (A:) Ubiquitin 37.7 25 0.0018 23.1 4.7 39 31-75 28-66 (73)
22 d1efaa1 a.35.1.5 (A:2-60) Lac 36.2 28 0.0021 21.8 4.6 42 178-222 9-50 (59)
23 d1y14a_ a.60.8.2 (A:) RNA poly 35.5 31 0.0022 26.9 5.6 25 67-91 116-140 (176)
24 d1qpza1 a.35.1.5 (A:2-58) Puri 35.3 27 0.002 21.7 4.4 42 178-222 7-48 (57)
25 d1vg5a_ a.5.2.1 (A:) Rhomboid 33.1 33 0.0024 22.5 4.7 38 32-75 29-66 (73)
26 d1k6ya1 a.4.10.1 (A:1-46) N-te 33.0 17 0.0012 21.8 2.8 24 36-59 19-42 (46)
27 d1z3ea1 c.47.1.12 (A:1-114) Re 30.5 36 0.0026 24.0 5.1 15 147-161 76-90 (114)
28 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 30.5 7 0.00051 24.0 0.7 18 205-222 7-24 (50)
29 d1qpza1 a.35.1.5 (A:2-58) Puri 29.3 18 0.0013 22.7 2.6 45 75-123 9-53 (57)
30 d1fada_ a.77.1.2 (A:) FADD (Mo 29.2 70 0.0051 21.4 6.3 44 239-285 19-63 (95)
31 d2hsga1 a.35.1.5 (A:2-58) Gluc 28.8 49 0.0035 20.4 4.8 44 75-122 10-53 (57)
32 d2r1jl1 a.35.1.2 (L:3-68) P22 28.2 62 0.0045 19.9 6.3 56 240-295 4-64 (66)
33 d1g8ma1 c.24.1.3 (A:4-200) IMP 27.1 35 0.0025 27.1 4.7 58 101-176 14-71 (197)
34 d1vkea_ a.152.1.2 (A:) Hypothe 26.7 1E+02 0.0073 21.8 7.4 27 236-262 56-82 (118)
35 d2od5a1 a.4.5.70 (A:6-96) Hypo 26.3 46 0.0033 22.8 4.5 35 63-97 22-59 (91)
36 d2prra1 a.152.1.3 (A:5-194) Un 26.0 88 0.0064 23.7 7.2 95 171-292 86-180 (190)
37 d1efaa1 a.35.1.5 (A:2-60) Lac 25.5 42 0.0031 20.9 4.0 44 75-122 11-54 (59)
38 d1sfxa_ a.4.5.50 (A:) Hypothet 24.5 77 0.0056 21.8 6.0 14 174-187 9-22 (109)
39 d1v38a_ a.60.1.2 (A:) Sam-doma 23.7 88 0.0064 20.1 6.3 16 31-47 10-26 (78)
40 d1go3f_ a.60.8.2 (F:) RNA poly 23.4 34 0.0025 24.2 3.6 39 53-92 40-78 (107)
41 d1ttea1 a.5.2.1 (A:161-215) Ub 23.3 46 0.0034 20.5 3.6 22 242-263 11-32 (55)
42 d1jmxa1 a.3.1.7 (A:2-85) Quino 23.0 67 0.0049 21.4 5.0 49 235-299 31-80 (84)
43 d1a9xa1 a.92.1.1 (A:403-555) C 22.8 72 0.0053 23.8 5.7 77 180-289 42-121 (153)
44 d1y9qa1 a.35.1.8 (A:4-82) Prob 22.5 91 0.0066 19.8 7.2 24 239-262 8-32 (79)
45 d1z96a1 a.5.2.1 (A:295-332) UB 22.2 59 0.0043 17.5 3.5 23 240-262 2-24 (38)
46 d1jh3a_ d.66.1.4 (A:) Tyrosyl- 22.2 36 0.0026 23.5 3.5 48 44-91 9-58 (99)
47 d2daha1 a.5.2.1 (A:8-48) Ubiqu 21.8 71 0.0051 18.3 4.3 15 104-118 4-18 (41)
48 d1zcza1 c.24.1.3 (A:1-157) IMP 21.8 22 0.0016 27.2 2.4 64 92-176 4-70 (157)
49 d1pbya1 a.3.1.7 (A:1-85) Quino 20.9 75 0.0054 21.2 4.9 23 270-292 51-73 (85)
50 d1e0ea_ a.4.10.1 (A:) N-termin 20.7 40 0.0029 20.0 2.9 24 36-59 19-42 (46)
51 d1rxwa1 a.60.7.1 (A:220-324) F 20.6 1.1E+02 0.0083 20.8 6.2 74 44-123 23-100 (105)
52 d2pfxa1 a.152.1.3 (A:1-190) Un 20.5 36 0.0026 26.4 3.6 93 172-291 90-182 (190)
53 d1y14a_ a.60.8.2 (A:) RNA poly 20.4 37 0.0027 26.4 3.5 42 41-87 123-166 (176)
54 d2oyoa1 a.152.1.3 (A:10-195) U 20.3 73 0.0053 24.2 5.5 94 172-292 86-179 (186)
55 d1g8ma1 c.24.1.3 (A:4-200) IMP 20.2 23 0.0017 28.2 2.2 39 67-107 33-71 (197)
No 1
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.45 E-value=2.6 Score=26.20 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
+++.+|+.| -+.||+++.+.+++... ...+++..++||-+
T Consensus 11 ~~~~~l~~L-~~MGF~~~~a~~AL~~t----~n~~ve~A~~WLl~ 50 (51)
T d2cpwa1 11 KHGSALDVL-LSMGFPRARAQKALAST----GGRSVQTACDWLFS 50 (51)
T ss_dssp SCCCHHHHH-HHHTCCHHHHHHHHHHT----TTSCHHHHHHHHHS
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHH----CCCCHHHHHHHHHc
Confidence 567789999 57999999999987653 12468888888754
No 2
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.18 E-value=1.1 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044946 239 TFDRKLDLFRSYGFSKEECIEMIRTA 264 (365)
Q Consensus 239 ~l~~~v~fL~~~G~s~~ev~~~i~~~ 264 (365)
..++.|+-|.++||+++++.+.++.+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46778888889999998888877654
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=74.30 E-value=1.4 Score=26.22 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=27.7
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHH
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLH 74 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~ 74 (365)
|+..+|+-| .+.||+++++.+++.++ .-+.+..+++|-
T Consensus 3 pk~~ai~eL-~~MGF~e~~A~~AL~k~-----~wnleaAtN~LL 40 (43)
T d2g3qa1 3 PKSLAVEEL-SGMGFTEEEAHNALEKC-----NWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHH-HTTTSCHHHHHHHHHHH-----TSCHHHHHHHHH
T ss_pred cHHHHHHHH-HhcCCCHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 456788888 77999999999888775 235666666664
No 4
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=57.92 E-value=15 Score=21.64 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHhcCCCHHHHHHHHhhcccCCCCCCc-hhHHHHHHhCCCChHHHHHH
Q 044946 38 YLIETVNIPKSRALVISNQFSRIKTLEKP-QTVSQFLHSVGFSDTHIQLA 86 (365)
Q Consensus 38 yL~~~~Gls~~~~~~i~~~~p~l~~~~~~-~~~~~~L~~lG~s~~~i~~l 86 (365)
-|++--|++++.+.++++++-.. +++ ++-++-|++-|++++||+.+
T Consensus 5 slisirgidreraerllkkyggy---skvreagveelredgltdaqirel 51 (55)
T d2csba4 5 SLISIRGIDRERAERLLKKYGGY---SKVREAGVEELREDGLTDAQIREL 51 (55)
T ss_dssp HHHTSTTCCHHHHHHHHHHHTSH---HHHHTSCHHHHHHTTCCHHHHHHH
T ss_pred ceeeeecccHHHHHHHHHHhcCh---hHHHHhhHHHHHHccccHHHHHHh
Confidence 35577899999999998876211 122 22378889999999999765
No 5
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=56.58 E-value=3.8 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCc
Q 044946 243 KLDLFRSYGFSKEECIEMIRTAPR 266 (365)
Q Consensus 243 ~v~fL~~~G~s~~ev~~~i~~~P~ 266 (365)
-|+-|.++||++++..+.+.++-.
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~~w 30 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKCNW 30 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHcCC
Confidence 466777899999998888776643
No 6
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=56.31 E-value=18 Score=21.85 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHH-HHHH
Q 044946 238 KTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEER-LKSG 278 (365)
Q Consensus 238 ~~l~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~-l~~k 278 (365)
+...+-++-|..+|++..|..+++.+.+. =..+.|. |+.-
T Consensus 3 ~~~~eAi~AL~~LGY~~~ea~~av~~i~~-~~~s~E~lIk~A 43 (48)
T d1cuka1 3 DAEQEAVARLVALGYKPQEASRMVSKIAR-PDASSETLIREA 43 (48)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHSCC-SSCCHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCCCHHHHHHHH
Confidence 34567788899999999999999987643 1345554 4443
No 7
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.15 E-value=6.7 Score=22.99 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=16.6
Q ss_pred CchhHHHHHHhCCCChHHHHHHHHhC
Q 044946 65 KPQTVSQFLHSVGFSDTHIQLAVHTK 90 (365)
Q Consensus 65 ~~~~~~~~L~~lG~s~~~i~~li~~~ 90 (365)
+.++.++-|.++||+.++..+.+..+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34556666667777777766666544
No 8
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.99 E-value=16 Score=22.28 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.9
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhC
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSV 76 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~l 76 (365)
+|.+|+-| -+.||++..+.+++... ...+++..++||-++
T Consensus 2 ~p~~v~~L-~~MGF~~~~a~~Al~~t----~n~~ve~A~~Wl~~h 41 (51)
T d2crna1 2 SPSLLEPL-LAMGFPVHTALKALAAT----GRKTAEEALAWLHDH 41 (51)
T ss_dssp SCSSHHHH-HHTSCCHHHHHHHHHHH----TSCCHHHHHHHHHHH
T ss_pred CHHHHHHH-HHcCCCHHHHHHHHHHH----CCCCHHHHHHHHHHc
Confidence 45678888 57999999998877542 124678888888754
No 9
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=45.59 E-value=61 Score=24.96 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=59.5
Q ss_pred HHHc-CCCCchHHHHHHHhcc-ccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHHH-cCCCh
Q 044946 109 FQQL-GLVGSDLGKFISNLER-KLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKS-CGIVG 185 (365)
Q Consensus 109 L~~l-Gl~~~~i~~ll~~~~~-~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~-lG~~~ 185 (365)
|..+ |+......+++..++. .=.|--.||..+|...|.+.....+...++.+- . -.....+-|.+ -|+.+
T Consensus 77 l~~l~~~g~ksa~nl~~~Ie~sk~~~l~r~l~aLGI~~vG~~~Ak~La~~f~sl~------~-l~~as~eeL~~I~GIG~ 149 (181)
T d1dgsa1 77 LLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMD------R-LLEASLEELIEVEEVGE 149 (181)
T ss_dssp HHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSBHH------H-HTTCCHHHHHTSTTCCH
T ss_pred HhcccccchHHHHHHHHHHHhhcchhHHHHHHHHHhhhhhHHHHHHHHHHhhhhh------h-hhhhHHHHHhhcCCcCH
Confidence 4444 6666777777777332 223345788888877555666666666665443 1 23445566777 47777
Q ss_pred hhHHHHhhhcCccceecchhHHHHHHHHHhccCCCc
Q 044946 186 SQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTD 221 (365)
Q Consensus 186 ~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~ 221 (365)
.....++.. .+.+...+.++.|.+.|++.+
T Consensus 150 ~~A~si~~f------f~~~~n~~~i~~L~~~Gv~~e 179 (181)
T d1dgsa1 150 LTARAILET------LKDPAFRDLVRRLKEAGVSME 179 (181)
T ss_dssp HHHHHHHHH------HHCHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHH------HCCHHHHHHHHHHHHcCCCcc
Confidence 666555432 223456677777877777654
No 10
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.41 E-value=25 Score=22.48 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhC
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSV 76 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~l 76 (365)
.+..++.-| -+.||+++.+.+++... ...+++..++||-+.
T Consensus 8 ~d~~~l~~L-~~MGF~~~~a~~AL~~t----~n~~~e~A~~Wl~~h 48 (64)
T d1whca_ 8 AELTALESL-IEMGFPRGRAEKALALT----GNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCHHHHH-HTTTCCHHHHHHHHHHH----TSCCHHHHHHHHHHH
T ss_pred cCHHHHHHH-HHcCCCHHHHHHHHHHh----CCCCHHHHHHHHHHC
Confidence 456688888 57999999998887653 113688888888753
No 11
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=44.77 E-value=20 Score=22.43 Aligned_cols=43 Identities=7% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCch
Q 044946 177 YLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDS 222 (365)
Q Consensus 177 ~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~ 222 (365)
.-+..|++...+++.+...|.+ +++.-+.+.+..+++|+.+..
T Consensus 7 vA~~agvS~~TVSr~Ln~~~~V---s~~tr~rV~~aa~~lgY~pn~ 49 (57)
T d2hsga1 7 VAREASVSMATVSRVVNGNPNV---KPSTRKKVLETIERLGYRPNA 49 (57)
T ss_dssp HHHHTTSCHHHHHHHHTTCTTS---CHHHHHHHHHHHHHHTCCSCH
T ss_pred HHHHHCcCHHHHHHHhCCCCcC---CHHHHHHHHHHHHHHCcCCCH
Confidence 3456899999999999877753 566666666777788887763
No 12
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.74 E-value=24 Score=22.40 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=25.9
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
+...|.-| -..||+++.+.+++... ..+++..++||-+
T Consensus 9 d~~~v~~L-~~MGF~~~~a~~AL~~~-----~~~~e~A~~wL~~ 46 (63)
T d1wjia_ 9 DEKALKHI-TEMGFSKEASRQALMDN-----GNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHH-HTTTCCHHHHHHHHHHT-----TSCHHHHHHHHHH
T ss_pred CHHHHHHH-HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 46677777 56788877777776553 3467777777764
No 13
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.59 E-value=13 Score=23.44 Aligned_cols=45 Identities=9% Similarity=0.241 Sum_probs=33.8
Q ss_pred HHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCch
Q 044946 178 LKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDS 222 (365)
Q Consensus 178 L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~ 222 (365)
-+..|++...+++++...|.-...+++.-+.+.+..+++|+.++.
T Consensus 7 A~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (59)
T d1uxda_ 7 ARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (59)
T ss_dssp HHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCS
T ss_pred HHHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCH
Confidence 355899999999999777764444666677777788888987763
No 14
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.10 E-value=7.4 Score=25.12 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
++.|+-|.++||+++++.+.++.+= .++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 5778999999999999988777531 2467778888754
No 15
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.87 E-value=23 Score=22.47 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=31.1
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHc
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQL 112 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~l 112 (365)
...++-|.++||+..+..+.+..+ .+++...++||.+-
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 456888999999999999988876 23688899999864
No 16
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=41.88 E-value=9.1 Score=25.43 Aligned_cols=38 Identities=11% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
++.|+-|.++||++++..+.++.+- .++..-++||.+.
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 5677888899999999887766432 2467778888754
No 17
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=41.29 E-value=19 Score=24.44 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=31.7
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCC
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVG 77 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG 77 (365)
+++.+|..| -+.||++..+.+++... ...+++..++||-++.
T Consensus 28 ~d~~~v~~L-~~MGF~~~~a~~AL~~t----~n~~~e~A~~Wl~~h~ 69 (84)
T d1veka_ 28 ANEEIVAQL-VSMGFSQLHCQKAAINT----SNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CCHHHHHHH-HHHTCCHHHHHHHHHHT----TTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHH----cCCCHHHHHHHHHHcC
Confidence 467788999 67999999999987542 1247888899987643
No 18
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.90 E-value=13 Score=24.63 Aligned_cols=38 Identities=13% Similarity=0.424 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 241 ~~~v~fL~~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
...|+-|.++||+++++.+.++.+- .++..-++||.+.
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHcC
Confidence 4668888899999999998877652 2477788888754
No 19
>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus thermophilus [TaxId: 274]}
Probab=39.64 E-value=22 Score=25.59 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=46.8
Q ss_pred chhchHHHHHH-cC-CChhhHHHHhhhcCccceecchhHHHHHHHHH-----hccCCCchhhHhHHHHHHhccChhhHHH
Q 044946 170 GLLRNIEYLKS-CG-IVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVL-----DMGFTTDSRMFVHGLDALCRLSEKTFDR 242 (365)
Q Consensus 170 ~l~~~v~~L~~-lG-~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~-----~lG~~~~~~~~~~~~~~l~~~s~~~l~~ 242 (365)
+.+..++-+.+ .| .-+..+..+-...|.++. ...+++. +-++++..+.++..--....-....++.
T Consensus 4 ~~e~~l~~~~~~~G~~~P~~~~~mae~~P~~l~-------~~~~~~~~~~~~~g~Ld~k~reLI~la~s~a~gc~~c~~~ 76 (117)
T d2cwqa1 4 THERVLQAMAENLGEGLPRAIPLLAEKAPGLLL-------EHGRSWTYAMPEKGALDEKTRTLILLGIALATGSEACVKA 76 (117)
T ss_dssp SSHHHHHHHHHHHGGGCCTHHHHHHHHCHHHHH-------HHHHHHHHHSCTTCSSCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHhChHHHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCChHHHHH
Confidence 34555566655 56 333444444335666542 2222222 2345655543332211122223556788
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 044946 243 KLDLFRSYGFSKEECIEMIR 262 (365)
Q Consensus 243 ~v~fL~~~G~s~~ev~~~i~ 262 (365)
.+....+.|.|++||..++.
T Consensus 77 h~~~A~~~G~t~eEI~Eal~ 96 (117)
T d2cwqa1 77 MAHRAKRLGLSKEALLETLK 96 (117)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 88888899999999987765
No 20
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.29 E-value=17 Score=23.25 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=21.2
Q ss_pred chhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 33 SIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 33 ~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
..+|+.| -.+||+++++.+++... ..+++..++||-+
T Consensus 20 e~~v~~L-~~MGF~~~~a~~AL~~~-----~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETV-VNMGYSYECVLRAMKKK-----GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHH-HHHHCCHHHHHHHHHHH-----CSCHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 3456666 44666666666665543 2356666666643
No 21
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.74 E-value=25 Score=23.11 Aligned_cols=39 Identities=5% Similarity=0.003 Sum_probs=27.2
Q ss_pred CCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 31 ~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
++..+|.-| -++||+++++.++++.. ..+++..++||-+
T Consensus 28 ~d~~~i~~L-~~MGF~~~~a~~AL~~~-----~~n~e~Av~~Lls 66 (73)
T d1wiva_ 28 IDQSSVDTL-LSFGFAEDVARKALKAS-----GGDIEKATDWVFN 66 (73)
T ss_dssp SCHHHHHHH-HHHTCCHHHHHHHHHHT-----TSCHHHHHHHHHH
T ss_pred CCHHHHHHH-HhcCCCHHHHHHHHHHc-----CCCHHHHHHHHHc
Confidence 345567777 46888888888877653 3467777777764
No 22
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.19 E-value=28 Score=21.81 Aligned_cols=42 Identities=5% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCch
Q 044946 178 LKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDS 222 (365)
Q Consensus 178 L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~ 222 (365)
-+..|++...+.+.+...|.+ +++.-+.+.+..+++|+.++.
T Consensus 9 A~~agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~ 50 (59)
T d1efaa1 9 AEYAGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNR 50 (59)
T ss_dssp HHTTTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCH
Confidence 345899999999988666543 566666667777788887764
No 23
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.53 E-value=31 Score=26.86 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=11.4
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhCC
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTKP 91 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~P 91 (365)
..+.++|.+.|+.+.+++.+..-+|
T Consensus 116 ~~vrelL~~~~L~~fE~a~L~NLcP 140 (176)
T d1y14a_ 116 GAVIQLLKSTGLHPFEVAQLGSLAC 140 (176)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCHHHHHHhhccCC
Confidence 3334444444455444444444444
No 24
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.33 E-value=27 Score=21.73 Aligned_cols=42 Identities=5% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCch
Q 044946 178 LKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDS 222 (365)
Q Consensus 178 L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~ 222 (365)
-+..|++...+.+.+...|. .+++.-+.+.+..+++|+.++.
T Consensus 7 A~~agVS~sTVSr~ln~~~~---vs~~tr~rV~~~a~~lgY~pn~ 48 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRF---VAEETRNAVWAAIKELHYSPSA 48 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHCcCHHHHHHHHCCCCc---cCHHHHHHHHHHHHHHCCCCCH
Confidence 35689999999999977664 3566666667777888888764
No 25
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.09 E-value=33 Score=22.45 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=26.7
Q ss_pred CchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHh
Q 044946 32 NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHS 75 (365)
Q Consensus 32 ~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~ 75 (365)
+...|+-| ..+||+++++.+++... ..+++..++||-+
T Consensus 29 ~ee~i~~L-~~MGF~~~~a~~AL~~~-----~~n~e~A~~~Ll~ 66 (73)
T d1vg5a_ 29 SEEQIQKL-VAMGFDRTQVEVALAAA-----DDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHH-HTTTCCHHHHHHHHHHH-----TSCHHHHHHHHHT
T ss_pred CHHHHHHH-HHhCCCHHHHHHHHHHh-----CCCHHHHHHHHHh
Confidence 44567777 66888888887777653 3577777887754
No 26
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=32.99 E-value=17 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCHHHHHHHHhhccc
Q 044946 36 LNYLIETVNIPKSRALVISNQFSR 59 (365)
Q Consensus 36 v~yL~~~~Gls~~~~~~i~~~~p~ 59 (365)
+.+|...+|++...+..|++.+|.
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~C~~ 42 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVASCDK 42 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 567878899999999999988875
No 27
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=30.50 E-value=36 Score=24.01 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=11.9
Q ss_pred chHHHHHHHhccccc
Q 044946 147 NEDLIRVIRRMSWDL 161 (365)
Q Consensus 147 ~~~v~~~l~~~P~iL 161 (365)
++++..++.++|.++
T Consensus 76 ~~~~i~ll~~~P~Li 90 (114)
T d1z3ea1 76 LQDLYRLINEHPGLL 90 (114)
T ss_dssp HHHHHHHHHHCGGGB
T ss_pred hHHHHHHHHhChhhe
Confidence 677888888888887
No 28
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.46 E-value=7 Score=24.04 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=8.8
Q ss_pred hHHHHHHHHHhccCCCch
Q 044946 205 KLRQLVLRVLDMGFTTDS 222 (365)
Q Consensus 205 ~i~~~v~~l~~lG~~~~~ 222 (365)
+...-++.|+++||....
T Consensus 7 ry~~QL~qL~~MGF~d~~ 24 (50)
T d2dnaa1 7 RFSKEMECLQAMGFVNYN 24 (50)
T ss_dssp HTHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHcCCCCHH
Confidence 344445555555554433
No 29
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.26 E-value=18 Score=22.66 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=22.3
Q ss_pred hCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCCCchHHHHH
Q 044946 75 SVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFI 123 (365)
Q Consensus 75 ~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~~~~i~~ll 123 (365)
..|+|.+.+.+++...|.+ +++ .-+...+..+++|..+...++-|
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s~~-tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---AEE-TRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---CHH-HHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---CHH-HHHHHHHHHHHHCCCCCHHHHHH
Confidence 3466666666666655532 222 22333334455666655555433
No 30
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.19 E-value=70 Score=21.38 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=26.9
Q ss_pred hHHHHHHHHH-HhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh
Q 044946 239 TFDRKLDLFR-SYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKK 285 (365)
Q Consensus 239 ~l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~ 285 (365)
.+-....-|. .+|++..+|..+-..+|.=. .+....-+.-..+.
T Consensus 19 ~lg~~Wk~Lar~Lgls~~~I~~I~~~~~~~~---~e~~~~mL~~W~~~ 63 (95)
T d1fada_ 19 NVGRDWKRLARELKVSEAKMDGIEEKYPRSL---SERVRESLKVWKNA 63 (95)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCH---HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHcCCCHHHHHHHHHHCCCCH---HHHHHHHHHHHHHH
Confidence 3444444455 89999999999888887421 23344444444433
No 31
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=28.77 E-value=49 Score=20.44 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=26.1
Q ss_pred hCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCCCchHHHH
Q 044946 75 SVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKF 122 (365)
Q Consensus 75 ~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~~~~i~~l 122 (365)
..|+|.+.+.+++...|.+ +++ .-+...+..+++|..+...++-
T Consensus 10 ~agvS~~TVSr~Ln~~~~V---s~~-tr~rV~~aa~~lgY~pn~~A~~ 53 (57)
T d2hsga1 10 EASVSMATVSRVVNGNPNV---KPS-TRKKVLETIERLGYRPNAVARG 53 (57)
T ss_dssp HTTSCHHHHHHHHTTCTTS---CHH-HHHHHHHHHHHHTCCSCHHHHH
T ss_pred HHCcCHHHHHHHhCCCCcC---CHH-HHHHHHHHHHHHCcCCCHHHHH
Confidence 4677777777777766643 332 2333344666777776655443
No 32
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=28.24 E-value=62 Score=19.90 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=28.7
Q ss_pred HHHHHHHHH-HhCCCHHHHHHHHHhcCcccccCHH-HHH---HHHHHHHHhhCCChhhHhh
Q 044946 240 FDRKLDLFR-SYGFSKEECIEMIRTAPRLLSASEE-RLK---SGLDFFLKKIEFGKAVLVR 295 (365)
Q Consensus 240 l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~~s~e-~l~---~k~~fL~~~mg~~~~~i~~ 295 (365)
+-.++..++ +.|++.+++++.+.-.+..+..=+. +-. ..+.-+.+.+|++.++++.
T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll~ 64 (66)
T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 64 (66)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 455666666 7788887777765433332211000 001 2344445566777776653
No 33
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.08 E-value=35 Score=27.06 Aligned_cols=58 Identities=14% Similarity=-0.062 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHcCCCCchHHHHHHHhccccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHH
Q 044946 101 TLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIE 176 (365)
Q Consensus 101 ~l~p~l~fL~~lGl~~~~i~~ll~~~~~~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~ 176 (365)
.|.+...+|.++|+.-=. -.-...||++.|.. -.+|.++ +.+|.+| ...+. +|-|++.
T Consensus 14 ~l~~la~~L~~~g~~Iis-----------TgGTak~L~~~gi~---v~~Vs~~-tg~peil-~GRVK--TLhPkI~ 71 (197)
T d1g8ma1 14 GLVEFARSLNALGLGLIA-----------SGGTATALRDAGLP---VRDVSDL-TGFPEML-GGRVK--TLHPAVH 71 (197)
T ss_dssp THHHHHHHHHHTTCEEEE-----------CHHHHHHHHHTTCC---CEEHHHH-HSCCCBG-GGTBS--SCSHHHH
T ss_pred CHHHHHHHHHHCCCEEEE-----------CcHHHHHHHHhccc---HHHHHhh-hcCHHHH-HHHHh--hccceee
Confidence 577777788887774100 02356788888887 8888884 7999999 99988 5999874
No 34
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga maritima [TaxId: 2336]}
Probab=26.74 E-value=1e+02 Score=21.78 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHHhCCCHHHHHHHHH
Q 044946 236 SEKTFDRKLDLFRSYGFSKEECIEMIR 262 (365)
Q Consensus 236 s~~~l~~~v~fL~~~G~s~~ev~~~i~ 262 (365)
.+.-+...+...++.|.|++||...+.
T Consensus 56 c~~c~~~H~~~A~~~G~t~eEI~Eal~ 82 (118)
T d1vkea_ 56 CDDCIRYHLVRCVQEGASDEEIFEALD 82 (118)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456788888999999999999987665
No 35
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=26.25 E-value=46 Score=22.81 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=28.7
Q ss_pred CCCchhHHHHHHh---CCCChHHHHHHHHhCCcceecC
Q 044946 63 LEKPQTVSQFLHS---VGFSDTHIQLAVHTKPTILFAD 97 (365)
Q Consensus 63 ~~~~~~~~~~L~~---lG~s~~~i~~li~~~P~lL~~~ 97 (365)
+.+-.++++.|.+ .|-+..||+.++.+.|++....
T Consensus 22 p~NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf~kiG 59 (91)
T d2od5a1 22 PRNTAEILEHINSTMRHGTTSQQLGNVLSKDKDIVKVG 59 (91)
T ss_dssp CEEHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTEEEEE
T ss_pred CCcHHHHHHHHHHhcccCCCHHHHHHHHhcCcchheec
Confidence 4456677888874 8999999999999999987644
No 36
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=25.97 E-value=88 Score=23.68 Aligned_cols=95 Identities=9% Similarity=0.093 Sum_probs=51.6
Q ss_pred hhchHHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCchhhHhHHHHHHhccChhhHHHHHHHHHHh
Q 044946 171 LLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSY 250 (365)
Q Consensus 171 l~~~v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~~~ 250 (365)
+.-....++..|.+++.+..+........ . .++.+..+++..++-.++. ..+ +.-++-|++.
T Consensus 86 ~~~h~~~~~~~g~~~~~~~~i~~~~~~~~-~-~~~~~a~l~~a~~~~~~~~------------~v~----d~~~~~L~~~ 147 (190)
T d2prra1 86 VVAHGAILRIYEKKPLVADQVAVNYLKAD-I-PPRQRAMLDFALKVCKASH------------EVN----EADFEALREH 147 (190)
T ss_dssp HHHHHHHHHHHHTCTTHHHHHHHHGGGSS-C-CHHHHHHHHHHHHHHHHGG------------GCC----HHHHHHHHTT
T ss_pred HHHHHHHHHHcccchhhHHHHHhcccccc-c-cHHHHHHHHHHHHHHHhcc------------CCC----HHHHHHHHHc
Confidence 33445566677777777765543322211 1 2233444444433211110 111 3556778899
Q ss_pred CCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhh
Q 044946 251 GFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAV 292 (365)
Q Consensus 251 G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~ 292 (365)
||+++||..++.-. .+-.-+..+.+.+|+++++
T Consensus 148 g~s~~eivel~~~v---------a~~~~~nr~~~~l~i~~d~ 180 (190)
T d2prra1 148 GFTDEDAWDIAAIT---------AFFGLSNRMANTIGMRPND 180 (190)
T ss_dssp TCCHHHHHHHHHHH---------HHHHHHHHHHHHHTCCCCH
T ss_pred CCCHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCCh
Confidence 99999998876611 2334556666777888654
No 37
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.54 E-value=42 Score=20.94 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=20.3
Q ss_pred hCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHHcCCCCchHHHH
Q 044946 75 SVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKF 122 (365)
Q Consensus 75 ~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~lGl~~~~i~~l 122 (365)
..|+|.+.+.+.+...|.+ +++ .-....+..+++|..+..+++.
T Consensus 11 ~agvS~sTVSr~l~~~~~v---s~~-tr~rI~~~a~~lgY~pn~~Ar~ 54 (59)
T d1efaa1 11 YAGVSYQTVSRVVNQASHV---SAK-TREKVEAAMAELNYIPNRVAQQ 54 (59)
T ss_dssp TTTSCHHHHHHHHTTCSSC---CTH-HHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHCCCHHHHHHHHCCCCcC---CHH-HHHHHHHHHHHHCCCcCHHHHH
Confidence 3455555555555544432 222 2232333444555555554443
No 38
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.51 E-value=77 Score=21.76 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=5.9
Q ss_pred hHHHHHHcCCChhh
Q 044946 174 NIEYLKSCGIVGSQ 187 (365)
Q Consensus 174 ~v~~L~~lG~~~~~ 187 (365)
.++.|+++|+++.+
T Consensus 9 l~~~L~~lGlt~~e 22 (109)
T d1sfxa_ 9 LVKALEKLSFKPSD 22 (109)
T ss_dssp HHHHHHHTCCCHHH
T ss_pred HHHHHHHcCCCHHH
Confidence 33444444444433
No 39
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.66 E-value=88 Score=20.09 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=10.5
Q ss_pred CCchhH-HHHHHhcCCCH
Q 044946 31 TNSIFL-NYLIETVNIPK 47 (365)
Q Consensus 31 ~~~~~v-~yL~~~~Gls~ 47 (365)
+.+..| +|| .++|+..
T Consensus 10 ~~~~~V~~WL-~~lgL~~ 26 (78)
T d1v38a_ 10 ENHQTIQEFL-ERIHLQE 26 (78)
T ss_dssp SSCCBHHHHH-HTTTCGG
T ss_pred CCHHHHHHHH-HHCCHHH
Confidence 345566 676 7788764
No 40
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.44 E-value=34 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCc
Q 044946 53 ISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPT 92 (365)
Q Consensus 53 i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~ 92 (365)
.++++..+ +++....+++-|.++|+.+..++++..-+|.
T Consensus 40 y~~~fak~-~~e~~~~l~~~L~~~~~~~~~aakIanL~P~ 78 (107)
T d1go3f_ 40 YLQKFAKL-DKEEAKKLVEELISLGIDEKTAVKIADILPE 78 (107)
T ss_dssp HHHHHCCS-CHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC
T ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 34555444 4556666777777788888888888877764
No 41
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.25 E-value=46 Score=20.46 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHh
Q 044946 242 RKLDLFRSYGFSKEECIEMIRT 263 (365)
Q Consensus 242 ~~v~fL~~~G~s~~ev~~~i~~ 263 (365)
..|+-|.++||+++.+..++++
T Consensus 11 ~~V~~f~~mGF~rdKvI~VLrr 32 (55)
T d1ttea1 11 DLIDEFESQGFEKDKIVEVLRR 32 (55)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCchhHHHHHHH
Confidence 3456667777877777766665
No 42
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=22.96 E-value=67 Score=21.42 Aligned_cols=49 Identities=6% Similarity=0.108 Sum_probs=30.8
Q ss_pred cChhhHHHHHHHHH-HhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhhHhhcCcc
Q 044946 235 LSEKTFDRKLDLFR-SYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCC 299 (365)
Q Consensus 235 ~s~~~l~~~v~fL~-~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~ 299 (365)
.+.+.|...|+.++ ..|. .++.+....-++||.+..|..+.+-...+.+
T Consensus 31 ~t~~~W~~~V~~M~~~~Ga----------------~l~~~e~~~Iv~YLa~~yG~~p~e~~~~r~~ 80 (84)
T d1jmxa1 31 KTPEGWLMSIARMQVMHGL----------------QISDDDRRTLVKYLADKQGLAPSETDGVRYA 80 (84)
T ss_dssp ECHHHHHHHHHHHHHHHCC----------------CCCHHHHHHHHHHHHHHTCCCGGGSTTCTTT
T ss_pred CCHHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 34556776666665 3342 1445556667999999999988775444433
No 43
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=22.82 E-value=72 Score=23.84 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=45.9
Q ss_pred HcCCChhhHHHHhhhcCccceecchhHHHHHH---HHHhccCCCchhhHhHHHHHHhccChhhHHHHHHHHHHhCCCHHH
Q 044946 180 SCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVL---RVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEE 256 (365)
Q Consensus 180 ~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~---~l~~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~~~G~s~~e 256 (365)
..|++-++|..+-.-.|++|. +++..++ .++..|...- + .+.+...+++|||..+
T Consensus 42 r~G~sveeI~elTkID~WFL~----qi~~Iv~~E~~l~~~~~~~l--------------~----~~~l~~aK~~GFSD~~ 99 (153)
T d1a9xa1 42 RAGLSVDGVFNLTNIDRWFLV----QIEELVRLEEKVAEVGITGL--------------N----ADFLRQLKRKGFADAR 99 (153)
T ss_dssp HTTBCHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHTGGGC--------------C----HHHHHHHHHTTCCHHH
T ss_pred HcCCCHHHHHHhhCeeeHHHH----HHHHHHHHHhhhhhcCcccC--------------C----HHHHHHHHHcCCCHHH
Confidence 369999999988877888773 3444442 2333332211 1 1234456799999999
Q ss_pred HHHHHHhcCcccccCHHHHHHHHHHHHHhhCCC
Q 044946 257 CIEMIRTAPRLLSASEERLKSGLDFFLKKIEFG 289 (365)
Q Consensus 257 v~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~ 289 (365)
|+.+ .+.+++. +.=++++.|+-
T Consensus 100 ia~l-------~~~~e~~----vr~~R~~~~i~ 121 (153)
T d1a9xa1 100 LAKL-------AGVREAE----IRKLRDQYDLH 121 (153)
T ss_dssp HHHH-------TTSCHHH----HHHHHHHTTCC
T ss_pred HHHH-------HcCcHHH----HHHHHHHccCC
Confidence 9875 4445544 33344455654
No 44
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=22.51 E-value=91 Score=19.82 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=17.4
Q ss_pred hHHHHHHHHH-HhCCCHHHHHHHHH
Q 044946 239 TFDRKLDLFR-SYGFSKEECIEMIR 262 (365)
Q Consensus 239 ~l~~~v~fL~-~~G~s~~ev~~~i~ 262 (365)
.+-.++..++ ..|+|.+++++.+.
T Consensus 8 ~ig~~lr~~R~~~g~sq~~lA~~~g 32 (79)
T d1y9qa1 8 QIANQLKNLRKSRGLSLDATAQLTG 32 (79)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4566777777 78888888877654
No 45
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=22.25 E-value=59 Score=17.54 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 044946 240 FDRKLDLFRSYGFSKEECIEMIR 262 (365)
Q Consensus 240 l~~~v~fL~~~G~s~~ev~~~i~ 262 (365)
+..|+..|.++||+.-|..+.+.
T Consensus 2 lnskiaqlvsmgfdpleaaqald 24 (38)
T d1z96a1 2 LNSKIAQLVSMGFDPLEAAQALD 24 (38)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHh
Confidence 35677777888888877665543
No 46
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.19 E-value=36 Score=23.47 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCC--ChHHHHHHHHhCC
Q 044946 44 NIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGF--SDTHIQLAVHTKP 91 (365)
Q Consensus 44 Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~--s~~~i~~li~~~P 91 (365)
+++.+++..+....|.......--+++++|...|+ |..+.+++|...-
T Consensus 9 ~L~~~~~~~~~~~~p~~~~~~~~~~l~~ll~~~~l~~S~seaRrlI~~gg 58 (99)
T d1jh3a_ 9 NLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGA 58 (99)
T ss_dssp TSCHHHHHHHHTTSCEEEECSSCCCHHHHHHHHTSCCSHHHHHHHHHSTT
T ss_pred hCCHHHHHHHHhcCCcEEecCCCCCHHHHHHHcCCCcCHHHHHHHHHcCC
Confidence 45666666666666655322222257777776555 6777777776553
No 47
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.80 E-value=71 Score=18.30 Aligned_cols=15 Identities=7% Similarity=0.459 Sum_probs=8.0
Q ss_pred HHHHHHHHcCCCCch
Q 044946 104 PKIAYFQQLGLVGSD 118 (365)
Q Consensus 104 p~l~fL~~lGl~~~~ 118 (365)
+.++-|+++|+++.+
T Consensus 4 ~QL~~L~~MGF~d~~ 18 (41)
T d2daha1 4 VQLEQLRSMGFLNRE 18 (41)
T ss_dssp HHHHHHHHHTCCCHH
T ss_pred HHHHHHHHcCCCCHH
Confidence 345555566665544
No 48
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=21.78 E-value=22 Score=27.17 Aligned_cols=64 Identities=14% Similarity=0.001 Sum_probs=0.0
Q ss_pred cceecCccCcHHHHHHHHHHcCCCCchHHHHHHHhccccch---hHHHHHHHhccCCCchHHHHHHHhccccccccCCCC
Q 044946 92 TILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIP---CVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEK 168 (365)
Q Consensus 92 ~lL~~~~~~~l~p~l~fL~~lGl~~~~i~~ll~~~~~~l~p---~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~ 168 (365)
.+++.+=-..+.+....|.++|+. +.. ..+||++.|.. -.+|.+ ++.+|.+| ...+.
T Consensus 4 aLISVsDK~~l~~la~~L~~~g~~--------------IisTgGTak~L~~~Gi~---v~~Vs~-~Tg~peil-~gRvK- 63 (157)
T d1zcza1 4 ILVSLYEKEKYLDILRELHEKGWE--------------IWASSGTAKFLKSNGIE---ANDVST-ITGFENLL-GGLVK- 63 (157)
T ss_dssp EEEECSSTGGGHHHHHHHHHTTCE--------------EEECHHHHHHHHHTTCC---CEEGGG-GSCCCCGG-GGTTT-
T ss_pred EEEEeecccchHHHHHHHHHCCCE--------------EEEcChHHHHHHHhhhh---hhHHHH-HhhHHHHH-Hhhhc-
Q ss_pred cchhchHH
Q 044946 169 SGLLRNIE 176 (365)
Q Consensus 169 ~~l~~~v~ 176 (365)
++-|++.
T Consensus 64 -TLhp~i~ 70 (157)
T d1zcza1 64 -TLHPEIF 70 (157)
T ss_dssp -TCCHHHH
T ss_pred -cchHHHH
No 49
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=20.93 E-value=75 Score=21.21 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=17.6
Q ss_pred cCHHHHHHHHHHHHHhhCCChhh
Q 044946 270 ASEERLKSGLDFFLKKIEFGKAV 292 (365)
Q Consensus 270 ~s~e~l~~k~~fL~~~mg~~~~~ 292 (365)
++.+....-++||.+..|..+++
T Consensus 51 l~~~e~~~Iv~YLa~~yG~~p~e 73 (85)
T d1pbya1 51 LEPEERAAIVRHLSDTRGLSLAE 73 (85)
T ss_dssp CCHHHHHHHHHHHHHHSCCCSGG
T ss_pred CCHHHHHHHHHHHHHHcCCCccc
Confidence 35555667799999999988766
No 50
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=20.70 E-value=40 Score=19.98 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCHHHHHHHHhhccc
Q 044946 36 LNYLIETVNIPKSRALVISNQFSR 59 (365)
Q Consensus 36 v~yL~~~~Gls~~~~~~i~~~~p~ 59 (365)
+.+|...+|+++..+..|++.+|.
T Consensus 19 ~~~L~~~F~lp~~vAr~IV~~C~~ 42 (46)
T d1e0ea_ 19 VKELSHKFGIPNLVARQIVNSCAQ 42 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 567777899999999999887753
No 51
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.63 E-value=1.1e+02 Score=20.85 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCcceecCcc---CcHHHHHHHH-HHcCCCCchH
Q 044946 44 NIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVN---KTLKPKIAYF-QQLGLVGSDL 119 (365)
Q Consensus 44 Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~---~~l~p~l~fL-~~lGl~~~~i 119 (365)
|+-+..|.++++++ .+++.+++.+.........+.+++...|.....+.+ -+.....+|| .++|++...+
T Consensus 23 GIG~ktA~kli~~~------gsle~i~~~~~~~~~~~~~~r~l~~~~~v~~~~~l~~~~~d~~~l~~fL~~e~~F~~~rv 96 (105)
T d1rxwa1 23 GVGVKKALNYIKTY------GDIFRALKALKVNIDHVEEIRNFFLNPPVTDDYRIEFREPDFEKAIEFLCEEHDFSRERV 96 (105)
T ss_dssp TCCHHHHHHHHHHH------SSHHHHHHHHTC----CHHHHHHHHSCCCCCCCCCCCCCCCHHHHHHHHTTTTCCCHHHH
T ss_pred CcCHHHHHHHHHHh------CCHHHHHHHHHhhHHHHHHHHHHhcCCCCCChHhhccCCCCHHHHHHHHHHHhCCCHHHH
Confidence 44455555555554 233444444443333334444444433322111110 1233344565 3567775555
Q ss_pred HHHH
Q 044946 120 GKFI 123 (365)
Q Consensus 120 ~~ll 123 (365)
.+.+
T Consensus 97 ~~~l 100 (105)
T d1rxwa1 97 EKAL 100 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 52
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=20.54 E-value=36 Score=26.39 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=51.7
Q ss_pred hchHHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCchhhHhHHHHHHhccChhhHHHHHHHHHHhC
Q 044946 172 LRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYG 251 (365)
Q Consensus 172 ~~~v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~~~G 251 (365)
.-....++..|.+.+.+..+... +.--.. .++.+..++|...+--++. ..+ ..-++-|++.|
T Consensus 90 ~~H~~~~~~~g~~~~~~~~i~~~-~~~~~~-~~~e~all~~a~~l~~~~~------------~v~----d~~~~~L~~~G 151 (190)
T d2pfxa1 90 VAHGAAVRQLSGDPQLGEMLVMN-YRVAPL-DARQRVMLDFAAKMTRASA------------EIE----EADREVLRSHG 151 (190)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHC-GGGSCC-CHHHHHHHHHHHHHHHHGG------------GCC----HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCChhhhhhHHhh-cccchh-hHHHHHHHHHHHHHHhCcC------------CCC----HHHHHHHHHCC
Confidence 33445677788888877765432 221111 2344555555544321110 112 34467788999
Q ss_pred CCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChh
Q 044946 252 FSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKA 291 (365)
Q Consensus 252 ~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~ 291 (365)
||++||..++. +. .+-.-+..+.+.+|+.++
T Consensus 152 ~sd~eI~el~~----~i-----a~~~~~nr~~~~lgv~pd 182 (190)
T d2pfxa1 152 FNDRDIWDIAN----VT-----GFFNMTNRVASATAMMPN 182 (190)
T ss_dssp CCHHHHHHHHH----HH-----HHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHH----HH-----HHHHHHHHHHHHcCCCCC
Confidence 99999988764 11 123445556667787653
No 53
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.38 E-value=37 Score=26.36 Aligned_cols=42 Identities=7% Similarity=0.162 Sum_probs=26.6
Q ss_pred HhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhC--CCChHHHHHHH
Q 044946 41 ETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSV--GFSDTHIQLAV 87 (365)
Q Consensus 41 ~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~l--G~s~~~i~~li 87 (365)
+.+|++..+++.+++-+ |+++++...++-++ .++++++.+++
T Consensus 123 ~~~~L~~fE~a~L~NLc-----Pet~eEAkaLiPSL~~k~~de~Lq~IL 166 (176)
T d1y14a_ 123 KSTGLHPFEVAQLGSLA-----CDTADEAKTLIPSLNNKISDDELERIL 166 (176)
T ss_dssp HTTTCCHHHHHHHHHSC-----CSSHHHHHHHSGGGTTTSCHHHHHHHH
T ss_pred HhcCCCHHHHHHhhccC-----CCCHHHHHHHhhhhcccCCHHHHHHHH
Confidence 66777777777766543 45666666666554 35666666655
No 54
>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446 {Deinococcus geothermalis [TaxId: 68909]}
Probab=20.28 E-value=73 Score=24.17 Aligned_cols=94 Identities=9% Similarity=0.056 Sum_probs=49.8
Q ss_pred hchHHHHHHcCCChhhHHHHhhhcCccceecchhHHHHHHHHHhccCCCchhhHhHHHHHHhccChhhHHHHHHHHHHhC
Q 044946 172 LRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYG 251 (365)
Q Consensus 172 ~~~v~~L~~lG~~~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~~lG~~~~~~~~~~~~~~l~~~s~~~l~~~v~fL~~~G 251 (365)
.......+..|.+++.+..+......-. . .++-+..+++...+--++. ..+ .+-++-+++.|
T Consensus 86 ~~H~~~a~~~g~~~~~~~~~~~~~~~~~-~-~~~e~a~l~~a~~lt~~~~------------~v~----~~~~~~l~~~g 147 (186)
T d2oyoa1 86 VSHGAALREFLGDPQKADAVAVNWRHAD-L-TEREQALAAYAEKLTRHPA------------EVT----AADLEPLRAVG 147 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHCGGGSC-C-CHHHHHHHHHHHHHHHCGG------------GCC----GGGGHHHHHTT
T ss_pred HHHHHHHhhccccchhhhHHHhcccccc-h-HHHHHHHHHHHHHHHhhhc------------ccC----HHHHHHHHHcC
Confidence 3445566777888887776554322211 1 2333444444443221111 111 23345677899
Q ss_pred CCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhh
Q 044946 252 FSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAV 292 (365)
Q Consensus 252 ~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~ 292 (365)
|++++|..++.-. .+-.-+..+.+.+|+++++
T Consensus 148 ~~~~~ivel~~~i---------a~~~~~nr~~~~lgi~~d~ 179 (186)
T d2oyoa1 148 LDDHQIMELVQVI---------GMFNLTNRVSSALGFVPNP 179 (186)
T ss_dssp CCHHHHHHHHHHH---------HHHHHHHHHHHHTTCCCCH
T ss_pred CCHHHHHHHHHHH---------HHHHHHHHHHHHcCCCCCH
Confidence 9999998876521 1233455566677776543
No 55
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.21 E-value=23 Score=28.15 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=32.7
Q ss_pred hhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHH
Q 044946 67 QTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIA 107 (365)
Q Consensus 67 ~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~ 107 (365)
.-+..+|++.|+...+|.++ +.+|.++.-.+ ++|.|++-
T Consensus 33 gGTak~L~~~gi~v~~Vs~~-tg~peil~GRV-KTLhPkI~ 71 (197)
T d1g8ma1 33 GGTATALRDAGLPVRDVSDL-TGFPEMLGGRV-KTLHPAVH 71 (197)
T ss_dssp HHHHHHHHHTTCCCEEHHHH-HSCCCBGGGTB-SSCSHHHH
T ss_pred cHHHHHHHHhcccHHHHHhh-hcCHHHHHHHH-hhccceee
Confidence 45788999999999999995 69999998887 47888774
Done!