BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044947
         (404 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida
          Albicans
 pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida
          Albicans
          Length = 341

 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 11/56 (19%)

Query: 10 PAKSITCD--RSHRSYDLCLINGSALFDPKTSTF-------FSVGHTDSTPSQPSL 56
          P  S+TCD  R  +S D C   G  ++ PK+ST        F +G+ D + SQ +L
Sbjct: 41 PDASVTCDKPRPGQSADFC--KGKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTL 94


>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
 pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
          Length = 113

 Score = 28.5 bits (62), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 228 VLVNRNARVGRTILNLREVK---KAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV 284
           +LVN + +V    L +R+V    K     GF+  +F PE    L D  R     H ++GV
Sbjct: 16  ILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDR---KDHYVIGV 72

Query: 285 HGAGLT--HSLFLRPGSVLMQ 303
            G G++    + L   SV++Q
Sbjct: 73  LGNGVSDLKPVLLTEPSVMLQ 93


>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
           (Ptpn4)
          Length = 320

 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 298 GSVLMQVVPIGTQWLSTVYFEKPARVLGLEYLEYKIKQEESSLVEKYGANDLVLKNPQAF 357
           G+VL Q           +Y +KP   +    L   I +     +  Y A  ++LK  + +
Sbjct: 45  GTVLTQ--------FDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVILKGNEDY 96

Query: 358 AGANWSNMRV 367
             AN+ NM +
Sbjct: 97  INANYINMEI 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,679,926
Number of Sequences: 62578
Number of extensions: 478742
Number of successful extensions: 1100
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 7
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)