Query 044947
Match_columns 404
No_of_seqs 291 out of 694
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 3.8E-77 8.3E-82 599.8 20.0 383 7-396 79-473 (475)
2 PF04577 DUF563: Protein of un 100.0 5.1E-30 1.1E-34 237.0 21.3 201 108-332 1-204 (206)
3 COG4421 Capsular polysaccharid 99.8 6.7E-20 1.5E-24 177.2 17.2 206 98-333 122-328 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 92.2 1.1 2.5E-05 39.5 9.1 71 223-303 27-98 (140)
5 PRK14178 bifunctional 5,10-met 86.5 2.7 5.9E-05 41.4 7.8 73 223-305 151-224 (279)
6 PF02882 THF_DHG_CYH_C: Tetrah 86.4 3 6.5E-05 37.7 7.4 71 224-304 36-107 (160)
7 cd01971 Nitrogenase_VnfN_like 77.0 4.1 8.9E-05 42.3 5.4 103 223-328 154-262 (427)
8 PRK14188 bifunctional 5,10-met 75.1 16 0.00034 36.4 8.7 72 223-304 157-229 (296)
9 cd00316 Oxidoreductase_nitroge 73.4 11 0.00025 38.1 7.5 99 222-326 150-251 (399)
10 PRK14194 bifunctional 5,10-met 72.4 17 0.00036 36.3 8.0 73 223-305 158-231 (301)
11 cd01080 NAD_bind_m-THF_DH_Cycl 72.0 8.6 0.00019 34.9 5.5 74 222-305 42-116 (168)
12 PF00389 2-Hacid_dh: D-isomer 71.7 15 0.00033 31.3 6.8 78 244-329 9-87 (133)
13 PRK14179 bifunctional 5,10-met 71.6 19 0.00042 35.5 8.3 72 223-304 157-229 (284)
14 PRK14174 bifunctional 5,10-met 71.1 8.6 0.00019 38.2 5.7 77 223-305 158-235 (295)
15 PRK14175 bifunctional 5,10-met 70.6 11 0.00025 37.2 6.4 73 223-305 157-230 (286)
16 PRK14190 bifunctional 5,10-met 69.2 18 0.0004 35.7 7.5 73 223-305 157-230 (284)
17 PRK14189 bifunctional 5,10-met 68.1 19 0.00042 35.6 7.4 72 223-304 157-229 (285)
18 PRK14170 bifunctional 5,10-met 68.0 22 0.00048 35.1 7.8 72 223-304 156-228 (284)
19 PLN02897 tetrahydrofolate dehy 67.9 15 0.00032 37.3 6.7 72 223-304 213-285 (345)
20 COG0190 FolD 5,10-methylene-te 67.1 18 0.0004 35.6 6.9 72 223-304 155-227 (283)
21 cd01967 Nitrogenase_MoFe_alpha 66.8 42 0.00092 34.3 10.0 97 223-326 159-258 (406)
22 PRK14191 bifunctional 5,10-met 66.6 22 0.00048 35.2 7.5 73 223-305 156-229 (285)
23 PRK14177 bifunctional 5,10-met 64.7 29 0.00062 34.4 7.8 72 223-304 158-230 (284)
24 PRK13337 putative lipid kinase 64.5 41 0.00089 33.1 9.1 69 240-308 18-92 (304)
25 PRK14180 bifunctional 5,10-met 64.4 20 0.00044 35.4 6.7 71 224-304 158-229 (282)
26 cd01079 NAD_bind_m-THF_DH NAD 64.0 21 0.00044 33.5 6.3 76 223-304 61-155 (197)
27 PRK14169 bifunctional 5,10-met 64.0 29 0.00064 34.3 7.8 71 224-304 156-227 (282)
28 PRK14172 bifunctional 5,10-met 63.9 29 0.00063 34.2 7.7 72 223-304 157-229 (278)
29 PRK14182 bifunctional 5,10-met 63.5 31 0.00067 34.1 7.8 72 223-304 156-228 (282)
30 PRK14171 bifunctional 5,10-met 63.2 31 0.00068 34.2 7.8 71 224-304 159-230 (288)
31 PRK14183 bifunctional 5,10-met 63.0 25 0.00054 34.7 7.1 73 223-305 156-229 (281)
32 PRK02910 light-independent pro 62.9 31 0.00067 36.9 8.4 103 222-327 156-261 (519)
33 PLN02616 tetrahydrofolate dehy 62.4 30 0.00065 35.4 7.7 72 223-304 230-302 (364)
34 PRK14186 bifunctional 5,10-met 62.3 32 0.00069 34.3 7.7 71 224-304 158-229 (297)
35 cd02696 MurNAc-LAA N-acetylmur 62.2 24 0.00051 31.4 6.3 47 245-291 33-82 (172)
36 PRK13059 putative lipid kinase 62.0 48 0.0011 32.5 9.0 91 228-326 6-102 (295)
37 PF01520 Amidase_3: N-acetylmu 61.2 20 0.00044 31.8 5.7 45 246-290 33-80 (175)
38 cd01981 Pchlide_reductase_B Pc 60.6 34 0.00073 35.5 8.0 102 223-327 161-265 (430)
39 PRK14166 bifunctional 5,10-met 60.2 37 0.00079 33.6 7.7 72 223-304 156-228 (282)
40 PRK10792 bifunctional 5,10-met 60.1 33 0.00072 33.9 7.4 73 223-305 158-231 (285)
41 PRK14173 bifunctional 5,10-met 59.3 37 0.00081 33.6 7.6 72 223-304 154-226 (287)
42 COG1597 LCB5 Sphingosine kinas 59.2 72 0.0016 31.6 9.7 93 227-327 6-104 (301)
43 TIGR02883 spore_cwlD N-acetylm 58.5 28 0.0006 31.9 6.2 47 245-291 34-97 (189)
44 PLN02516 methylenetetrahydrofo 58.3 40 0.00088 33.6 7.7 73 223-305 166-239 (299)
45 PRK08306 dipicolinate synthase 58.3 52 0.0011 32.5 8.5 82 244-332 15-121 (296)
46 PRK13055 putative lipid kinase 58.2 59 0.0013 32.6 9.0 93 228-327 7-106 (334)
47 PRK14181 bifunctional 5,10-met 57.6 43 0.00093 33.2 7.6 72 223-304 152-228 (287)
48 COG3959 Transketolase, N-termi 57.3 20 0.00042 34.4 5.0 50 226-278 173-226 (243)
49 cd01972 Nitrogenase_VnfE_like 57.2 20 0.00043 37.2 5.6 102 223-327 160-266 (426)
50 TIGR02853 spore_dpaA dipicolin 56.8 50 0.0011 32.5 8.1 81 245-330 165-260 (287)
51 PRK11914 diacylglycerol kinase 56.1 51 0.0011 32.4 8.1 81 227-308 12-97 (306)
52 PRK14187 bifunctional 5,10-met 55.1 48 0.001 33.0 7.6 71 224-304 160-231 (294)
53 PRK14176 bifunctional 5,10-met 54.6 46 0.001 33.0 7.3 73 223-305 163-236 (287)
54 PF00148 Oxidored_nitro: Nitro 54.2 10 0.00023 38.6 2.9 98 222-325 142-243 (398)
55 PF00781 DAGK_cat: Diacylglyce 53.5 1.4E+02 0.003 25.2 10.2 90 228-327 4-103 (130)
56 PF05222 AlaDh_PNT_N: Alanine 53.1 71 0.0015 27.8 7.6 91 238-332 11-115 (136)
57 PRK14168 bifunctional 5,10-met 53.1 55 0.0012 32.6 7.6 72 223-304 160-236 (297)
58 PRK14167 bifunctional 5,10-met 52.8 48 0.001 33.0 7.1 71 224-304 157-232 (297)
59 TIGR03702 lip_kinase_YegS lipi 52.7 95 0.0021 30.3 9.3 79 242-327 15-101 (293)
60 PRK14193 bifunctional 5,10-met 52.1 58 0.0013 32.3 7.6 72 223-304 157-231 (284)
61 PRK08306 dipicolinate synthase 51.4 57 0.0012 32.2 7.5 95 225-331 153-262 (296)
62 PRK14184 bifunctional 5,10-met 50.8 53 0.0011 32.5 7.1 72 224-305 157-233 (286)
63 PRK14185 bifunctional 5,10-met 49.7 65 0.0014 32.0 7.5 71 224-304 157-232 (293)
64 PRK10319 N-acetylmuramoyl-l-al 47.7 41 0.00088 33.3 5.8 56 247-307 92-150 (287)
65 PRK12548 shikimate 5-dehydroge 47.1 98 0.0021 30.3 8.4 94 226-329 152-256 (289)
66 PRK13054 lipid kinase; Reviewe 44.9 1.6E+02 0.0034 28.8 9.5 81 226-308 5-93 (300)
67 cd01968 Nitrogenase_NifE_I Nit 44.5 1.3E+02 0.0028 31.0 9.2 97 224-327 158-257 (410)
68 cd01980 Chlide_reductase_Y Chl 44.4 29 0.00062 36.0 4.3 95 224-327 159-254 (416)
69 PF13271 DUF4062: Domain of un 44.1 60 0.0013 25.5 5.3 46 245-290 17-65 (83)
70 PRK13057 putative lipid kinase 43.7 1.1E+02 0.0024 29.7 8.2 66 242-308 14-83 (287)
71 PRK02261 methylaspartate mutas 43.1 1.1E+02 0.0024 26.6 7.3 58 223-284 2-60 (137)
72 PLN02204 diacylglycerol kinase 43.0 1.2E+02 0.0026 33.2 8.9 90 198-293 140-234 (601)
73 TIGR02667 moaB_proteo molybden 42.4 72 0.0016 28.6 6.1 56 242-297 23-83 (163)
74 CHL00076 chlB photochlorophyll 42.3 90 0.002 33.4 7.8 103 222-327 161-266 (513)
75 COG1703 ArgK Putative periplas 41.2 33 0.00071 34.4 3.9 45 244-288 133-177 (323)
76 TIGR00147 lipid kinase, YegS/R 40.9 2.1E+02 0.0046 27.6 9.7 83 226-308 3-92 (293)
77 TIGR01501 MthylAspMutase methy 40.8 1E+02 0.0022 27.1 6.5 40 244-285 19-59 (134)
78 TIGR00177 molyb_syn molybdenum 40.5 45 0.00098 29.1 4.4 52 241-292 27-81 (144)
79 PRK10964 ADP-heptose:LPS hepto 40.1 1.3E+02 0.0027 29.6 8.0 83 224-308 178-282 (322)
80 cd01965 Nitrogenase_MoFe_beta_ 39.1 91 0.002 32.3 7.1 101 223-327 154-274 (428)
81 PRK14192 bifunctional 5,10-met 38.5 61 0.0013 31.9 5.4 70 226-305 161-231 (283)
82 cd01977 Nitrogenase_VFe_alpha 37.9 74 0.0016 32.9 6.2 97 224-327 162-261 (415)
83 COG2185 Sbm Methylmalonyl-CoA 37.4 1.3E+02 0.0028 26.8 6.7 67 222-292 10-77 (143)
84 TIGR00640 acid_CoA_mut_C methy 36.4 1.4E+02 0.0031 25.8 6.8 41 246-288 22-63 (132)
85 COG1920 Predicted nucleotidylt 35.4 38 0.00082 31.7 3.1 60 266-332 102-163 (210)
86 PF03575 Peptidase_S51: Peptid 34.9 93 0.002 27.3 5.6 43 244-287 3-45 (154)
87 cd02410 archeal_CPSF_KH The ar 34.6 76 0.0016 28.3 4.8 79 223-308 7-88 (145)
88 PF03698 UPF0180: Uncharacteri 33.8 41 0.0009 26.9 2.7 43 242-295 9-51 (80)
89 PF10087 DUF2325: Uncharacteri 33.6 1E+02 0.0022 24.9 5.2 43 242-284 11-55 (97)
90 PRK03094 hypothetical protein; 33.4 59 0.0013 26.1 3.5 21 242-262 9-29 (80)
91 TIGR00507 aroE shikimate 5-deh 33.3 1.6E+02 0.0035 28.3 7.5 51 275-329 176-234 (270)
92 cd03129 GAT1_Peptidase_E_like 33.2 1.5E+02 0.0033 27.3 6.9 66 223-290 28-93 (210)
93 cd01976 Nitrogenase_MoFe_alpha 32.7 92 0.002 32.4 5.9 97 224-327 172-271 (421)
94 PF02423 OCD_Mu_crystall: Orni 32.6 56 0.0012 32.5 4.1 69 226-308 155-227 (313)
95 cd00758 MoCF_BD MoCF_BD: molyb 32.5 68 0.0015 27.5 4.2 50 242-291 20-72 (133)
96 PRK00861 putative lipid kinase 32.2 3.1E+02 0.0068 26.6 9.4 79 228-308 7-90 (300)
97 PF03193 DUF258: Protein of un 31.5 82 0.0018 28.5 4.6 53 244-296 2-58 (161)
98 smart00852 MoCF_biosynth Proba 31.0 79 0.0017 27.0 4.3 51 242-292 19-72 (135)
99 TIGR01862 N2-ase-Ialpha nitrog 30.7 94 0.002 32.5 5.6 97 224-327 191-290 (443)
100 cd01078 NAD_bind_H4MPT_DH NADP 30.3 1.7E+02 0.0038 26.3 6.8 70 226-304 54-128 (194)
101 TIGR01284 alt_nitrog_alph nitr 30.2 91 0.002 32.8 5.4 97 224-327 199-298 (457)
102 TIGR02193 heptsyl_trn_I lipopo 30.2 2.3E+02 0.0049 27.6 8.0 82 223-306 178-281 (319)
103 cd08191 HHD 6-hydroxyhexanoate 30.1 2.1E+02 0.0045 29.3 7.9 59 226-286 24-88 (386)
104 PF01976 DUF116: Protein of un 29.7 1.2E+02 0.0026 27.3 5.4 39 243-284 75-113 (158)
105 cd08184 Fe-ADH3 Iron-containin 29.3 1.2E+02 0.0025 30.8 5.8 43 244-286 39-90 (347)
106 COG3769 Predicted hydrolase (H 29.3 1.1E+02 0.0024 29.5 5.2 68 224-308 6-80 (274)
107 cd08190 HOT Hydroxyacid-oxoaci 29.0 1.2E+02 0.0027 31.3 6.1 61 226-288 25-91 (414)
108 PF02737 3HCDH_N: 3-hydroxyacy 28.9 59 0.0013 29.5 3.4 57 245-308 95-153 (180)
109 PRK00258 aroE shikimate 5-dehy 27.6 2.1E+02 0.0046 27.7 7.2 53 273-329 181-241 (278)
110 PRK09860 putative alcohol dehy 26.7 1.9E+02 0.0042 29.5 7.0 59 226-286 33-97 (383)
111 TIGR01278 DPOR_BchB light-inde 25.4 1.8E+02 0.0039 31.1 6.7 102 223-327 157-264 (511)
112 TIGR01283 nifE nitrogenase mol 25.3 1.4E+02 0.0029 31.4 5.7 96 224-326 197-295 (456)
113 PF13528 Glyco_trans_1_3: Glyc 24.3 3.7E+02 0.008 25.8 8.3 60 245-304 206-278 (318)
114 cd08178 AAD_C C-terminal alcoh 24.1 1.5E+02 0.0031 30.5 5.6 59 226-286 23-87 (398)
115 PRK15454 ethanol dehydrogenase 24.1 2.6E+02 0.0055 28.8 7.3 60 226-287 51-116 (395)
116 cd00886 MogA_MoaB MogA_MoaB fa 24.0 1.2E+02 0.0025 26.7 4.2 56 241-296 20-80 (152)
117 PF01870 Hjc: Archaeal hollida 23.7 1.7E+02 0.0037 23.7 4.7 33 243-287 3-35 (88)
118 PF12689 Acid_PPase: Acid Phos 23.6 1.2E+02 0.0026 27.6 4.2 93 228-331 35-127 (169)
119 PRK09989 hypothetical protein; 23.6 1.6E+02 0.0035 27.9 5.5 49 242-290 16-64 (258)
120 TIGR01860 VNFD nitrogenase van 23.6 1.1E+02 0.0024 32.2 4.7 97 224-327 201-300 (461)
121 cd08192 Fe-ADH7 Iron-containin 23.6 2.5E+02 0.0053 28.4 7.0 59 226-286 26-90 (370)
122 cd08194 Fe-ADH6 Iron-containin 23.5 1.8E+02 0.004 29.5 6.1 60 226-287 25-90 (375)
123 cd00885 cinA Competence-damage 23.3 1.1E+02 0.0023 27.7 3.9 58 240-297 18-78 (170)
124 PRK07589 ornithine cyclodeamin 23.0 1.4E+02 0.003 30.3 5.1 66 226-305 156-225 (346)
125 PF00670 AdoHcyase_NAD: S-aden 22.8 1.2E+02 0.0026 27.5 4.1 33 273-305 74-110 (162)
126 cd02072 Glm_B12_BD B12 binding 22.8 1.4E+02 0.003 25.9 4.3 38 245-284 18-56 (128)
127 PF00994 MoCF_biosynth: Probab 22.5 78 0.0017 27.3 2.8 51 241-291 17-70 (144)
128 KOG3922 Sulfotransferases [Pos 22.4 1.4E+02 0.003 30.1 4.6 56 222-279 75-134 (361)
129 PRK05568 flavodoxin; Provision 22.2 2E+02 0.0043 24.4 5.3 51 224-282 3-53 (142)
130 TIGR01861 ANFD nitrogenase iro 22.1 1.7E+02 0.0036 31.5 5.7 96 225-327 203-301 (513)
131 cd07409 MPP_CD73_N CD73 ecto-5 21.8 1.5E+02 0.0032 28.9 4.8 40 245-286 173-215 (281)
132 PRK10431 N-acetylmuramoyl-l-al 21.7 1.8E+02 0.004 30.7 5.7 70 222-291 188-275 (445)
133 PRK09424 pntA NAD(P) transhydr 21.6 3.6E+02 0.0077 29.0 8.0 91 238-333 14-117 (509)
134 TIGR02370 pyl_corrinoid methyl 21.6 4E+02 0.0087 24.5 7.5 62 222-287 82-144 (197)
135 PRK14569 D-alanyl-alanine synt 21.5 2E+02 0.0044 28.0 5.8 62 224-287 3-67 (296)
136 PRK02842 light-independent pro 21.5 91 0.002 32.4 3.5 94 224-327 166-262 (427)
137 TIGR01282 nifD nitrogenase mol 21.2 1.7E+02 0.0038 30.8 5.5 96 224-326 207-305 (466)
138 PRK09424 pntA NAD(P) transhydr 21.2 2.8E+02 0.006 29.9 7.0 61 245-305 199-285 (509)
139 PRK09479 glpX fructose 1,6-bis 21.2 2.2E+02 0.0048 28.6 5.9 55 222-287 156-213 (319)
140 cd08188 Fe-ADH4 Iron-containin 21.1 3.1E+02 0.0068 27.8 7.3 60 226-287 30-95 (377)
141 TIGR02638 lactal_redase lactal 21.0 2.9E+02 0.0064 28.0 7.0 59 226-286 31-95 (379)
142 TIGR02015 BchY chlorophyllide 20.6 1.6E+02 0.0035 30.6 5.1 81 242-327 178-260 (422)
143 cd03146 GAT1_Peptidase_E Type 20.5 2.4E+02 0.0052 26.2 5.8 63 222-289 29-92 (212)
144 cd08176 LPO Lactadehyde:propan 20.4 2.1E+02 0.0046 29.1 5.8 60 226-287 30-95 (377)
145 cd08183 Fe-ADH2 Iron-containin 20.3 3.2E+02 0.0068 27.7 7.1 57 226-287 24-85 (374)
146 PRK00286 xseA exodeoxyribonucl 20.2 6.5E+02 0.014 26.1 9.5 136 128-276 85-247 (438)
147 smart00115 CASc Caspase, inter 20.2 3.4E+02 0.0073 25.8 6.9 55 242-298 31-94 (241)
148 cd08179 NADPH_BDH NADPH-depend 20.2 2.8E+02 0.0061 28.1 6.7 61 226-287 25-91 (375)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.8e-77 Score=599.85 Aligned_cols=383 Identities=35% Similarity=0.638 Sum_probs=353.6
Q ss_pred CCCCCCCceecCCCCCccceEEecceEecCCceEEEEEcCCCCCCCCCCCCcccCCCCCCCcccccCCceeEEEecCC-C
Q 044947 7 ALSPAKSITCDRSHRSYDLCLINGSALFDPKTSTFFSVGHTDSTPSQPSLRIKTQPYPRKSDKSAMSKVKELTITTSA-P 85 (404)
Q Consensus 7 ~~~~~~~~~C~~~~~~~d~C~~~gd~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~py~rk~~~~~m~~v~e~~v~~~~-~ 85 (404)
...+.+.++||+++.++|+|+++||+|+|+.++++++....... +..+.+|+||||+||||.++|+.|+|++|.... .
T Consensus 79 ~~~e~~~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~~-~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~ 157 (475)
T KOG4698|consen 79 SALEDSSFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLLT-FSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGS 157 (475)
T ss_pred cccCCceEEeeccccccchhhhcCccccCcchhhhhhhccchhh-hccccchhcccccccccccccccccccceEEcCCc
Confidence 34566779999999999999999999999999999887653221 235789999999999999999999999997443 5
Q ss_pred CCCCCceEecccEEEEeeCCCCCCchhhhhhhhhhHHHhhh--hcCCCCCEEEEEcCCCchhhhHHHHHHHhhcCCCcee
Q 044947 86 PNLSCGVTHTSPALVFSAGGYNGNFFHEFMDCFVPLFITIN--SHFPDQDVILAIADCNDQWARKYAELLPRFTRHPIIN 163 (404)
Q Consensus 86 ~~~~C~~~~~~Pavv~s~~gy~~N~~H~~~D~liPlf~t~~--~~~~~~~v~lvi~d~~~~w~~~y~~ll~~lS~~~ii~ 163 (404)
...+|+++|++|+++|++|||++|.||+|+|+++|||+|.+ .| +++++++|++.++||..+|.+++++||+||+++
T Consensus 158 ~~r~c~v~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~--n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~ 235 (475)
T KOG4698|consen 158 EIRRCDVNHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRF--NKEVQFLITETHSWWDMKFGDVVRQLSNYPVVD 235 (475)
T ss_pred ccceeeeecccchheeecCCcchhhHHHHHhhhhhhhcccchhcc--cccEEEEEEEcchhhhhhHHHHHHhcCCCceEE
Confidence 67899999999999999999999999999999999999999 56 999999999999999999999999999999999
Q ss_pred ccCCCceeeeceeEEeccccCCccccCCCCCCC--ccHHHHHHHHHhhcCCCCC----CCCCCCCCCCEEEEEecCCCCC
Q 044947 164 INNQTITHCFQSVTLGLISHGRMVINPTLLPKP--KTLVDFQSFLANAYNENTN----TSSSFHHTKPKLVLVNRNARVG 237 (404)
Q Consensus 164 l~~~~~~~CF~~~ivGl~~h~~l~idp~~~p~~--~~~~~F~~fl~~~~~~~~~----~~~~~~~~~prv~~i~R~~~~~ 237 (404)
++++..+|||++++|||..|.++.+||+..+++ .+|.+|++++..+|+++.. +...+ .++||+++++|.++
T Consensus 236 ~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~~-~kkpri~~lsR~~~-- 312 (475)
T KOG4698|consen 236 FDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPEP-WKKPRITILSRAGS-- 312 (475)
T ss_pred ecCCceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcCh-hhCCceEEEecccc--
Confidence 999999999999999999999999999988765 8999999999999997442 22223 56799999999999
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccCCCcEEEEEeeCC-cccccccc
Q 044947 238 RTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQVVPIG-TQWLSTVY 316 (404)
Q Consensus 238 R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~pgs~vIEI~P~g-~~w~~~~~ 316 (404)
|.|+||+||.+++++.||+|.+++++. .++.+|+++.+++|||+|+|||||||++|+||++++|||.|+| .+|.+..+
T Consensus 313 r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a 391 (475)
T KOG4698|consen 313 RAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLA 391 (475)
T ss_pred hhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhh
Confidence 999999999999999999999999974 9999999999999999999999999999999999999999999 99999999
Q ss_pred hHhHHhhcCCeEEEEEeccccchhhhhcCCCCccccCcccccCCCcc--cceeecCCCceEEehHHHHHHHHHHHHHHHH
Q 044947 317 FEKPARVLGLEYLEYKIKQEESSLVEKYGANDLVLKNPQAFAGANWS--NMRVYLKTQNVKLDIDRFRIYLKDAYKKAKK 394 (404)
Q Consensus 317 y~~lA~~~gl~Y~~y~i~~~Essl~~~y~~~~~~~~dP~~~~~~gw~--~~~~yl~~qdv~vdi~rf~~~L~~a~~~l~~ 394 (404)
|..+|+.|+++|.+|+|.++||+|.++||.|+++..||.+..++||+ .+.+||..|+|++|+.||++.+.+|++.++.
T Consensus 392 ~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~~~ 471 (475)
T KOG4698|consen 392 RLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKEIT 471 (475)
T ss_pred hccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 4489999999999999999999999988876
Q ss_pred hh
Q 044947 395 LM 396 (404)
Q Consensus 395 ~~ 396 (404)
++
T Consensus 472 ~~ 473 (475)
T KOG4698|consen 472 QL 473 (475)
T ss_pred hh
Confidence 64
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.97 E-value=5.1e-30 Score=236.98 Aligned_cols=201 Identities=24% Similarity=0.413 Sum_probs=152.2
Q ss_pred CCchhhhhhhhhhHHHhhhhcCCCCCEEEEEcC--CCchhhhHHHHHHHhhcC-CCceeccCCCceeeeceeEEeccccC
Q 044947 108 GNFFHEFMDCFVPLFITINSHFPDQDVILAIAD--CNDQWARKYAELLPRFTR-HPIININNQTITHCFQSVTLGLISHG 184 (404)
Q Consensus 108 ~N~~H~~~D~liPlf~t~~~~~~~~~v~lvi~d--~~~~w~~~y~~ll~~lS~-~~ii~l~~~~~~~CF~~~ivGl~~h~ 184 (404)
.|+||++.| ++|.+.+++++.++++..+++.+ ..+ .-+.++|+.|+- .+.+.+. .++..||++++++.....
T Consensus 1 ~~~gH~l~d-~l~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~l~~lg~~~~~i~~~-~~~~~~~~~l~~~~~~~~ 75 (206)
T PF04577_consen 1 NNFGHFLID-FLPRLWYLPQYIPDSDIIILVPDDFDNP---PFIREILELLGIPENRIKID-SDEPVCFERLIVPSPPYS 75 (206)
T ss_pred CCCcEEHHH-HHHHHHHHHHHCCCCCeEEEEcCCcccc---HHHHHHHHHcCCCccEEEEc-CCCeEEECEEEEeCCCcc
Confidence 478899999 67777888887566666777766 322 223467766663 3333222 347899999998765431
Q ss_pred CccccCCCCCCCccHHHHHHHHHhhcCCCCCCCCCCCCCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCC
Q 044947 185 RMVINPTLLPKPKTLVDFQSFLANAYNENTNTSSSFHHTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEE 264 (404)
Q Consensus 185 ~l~idp~~~p~~~~~~~F~~fl~~~~~~~~~~~~~~~~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~ 264 (404)
... ........|++++++.++... ..+||++|++|+++..|+|.||+||++.+++.||+++.. +
T Consensus 76 ~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~p~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~~v~~--~- 139 (206)
T PF04577_consen 76 PSD------FNPSFFPALRDRIRRKLNLPP-------PKRPRILYISRRKSGSRRILNEDELLEILKKYGFEVVDP--E- 139 (206)
T ss_pred ccC------cCchHHHHHHHHHHHHhCCcc-------cCCCeEEEEecCCCCCCcCcCHHHHHHHHhhCCeEEEeC--C-
Confidence 111 111233478888888886542 246799999995555599999999999999999887664 4
Q ss_pred CCCHHHHHHHHhhCCeEEEechhhhhhhhccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEEEEE
Q 044947 265 STSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYLEYK 332 (404)
Q Consensus 265 ~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~~y~ 332 (404)
++|+.||++++++||+|||+|||||+|++||+||+.||||+|... ...+|..+|+.+|++|..+.
T Consensus 140 ~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~---~~~~~~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 140 DLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY---YNRHYRNLAQALGIHYYAVY 204 (206)
T ss_pred CCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC---CCHHHHHHHHHcCCeEEEEe
Confidence 799999999999999999999999999999999999999987762 23459999999999999764
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=6.7e-20 Score=177.22 Aligned_cols=206 Identities=21% Similarity=0.292 Sum_probs=137.3
Q ss_pred EEEEeeCCCCCCchhhhhhhhhhHHHhhhhcCCCCCEEEEEcCCCchhhhHHHHHHHhhc-CCCceeccCCCceeeecee
Q 044947 98 ALVFSAGGYNGNFFHEFMDCFVPLFITINSHFPDQDVILAIADCNDQWARKYAELLPRFT-RHPIININNQTITHCFQSV 176 (404)
Q Consensus 98 avv~s~~gy~~N~~H~~~D~liPlf~t~~~~~~~~~v~lvi~d~~~~w~~~y~~ll~~lS-~~~ii~l~~~~~~~CF~~~ 176 (404)
..||...|++.||.|++.| .+|....+++...--+-.|+.....+ |. .+++..+. +.++|.. ...+|-..+
T Consensus 122 ~~v~~~~~~~~~Yghflle-~Lp~l~~i~~l~i~~~~pLl~P~~~~-wq---adll~m~~~~~~ii~~---~p~V~~~~a 193 (368)
T COG4421 122 GAVFKEWGFSFEYGHFLLE-NLPYLWQIKSLGILSDPPLLYPRLTE-WQ---ADLLFMAGPDCPIIAT---APAVPLGPA 193 (368)
T ss_pred cceecccccccccchhHHh-hhHHHHHHhhhcccccCcccCCcchH-HH---HhHHhhcCCCCceeec---ccceeeccc
Confidence 3456667889999999999 78877777765111233344433333 32 35665554 6666655 456676655
Q ss_pred EEeccccCCccccCCCCCCCccHHHHHHHHHhhcCCCCCCCCCCCCCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCe
Q 044947 177 TLGLISHGRMVINPTLLPKPKTLVDFQSFLANAYNENTNTSSSFHHTKPKLVLVNRNARVGRTILNLREVKKAAEELGFD 256 (404)
Q Consensus 177 ivGl~~h~~l~idp~~~p~~~~~~~F~~fl~~~~~~~~~~~~~~~~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~ 256 (404)
++.-.. +| .-++.++...... +. ...++...++.+|+||+..+-|+++||+||...+++.||.
T Consensus 194 vl~~~~------s~---------~~~ha~l~~~~eR-~~-~~~~~~~~adkiYVSR~~qS~R~lvnE~evE~~~q~~G~~ 256 (368)
T COG4421 194 VLPVSG------SP---------RYTHALLAWKDER-VI-AIKGKGKVADKIYVSRKAQSMRVLVNEEEVERLLQRSGLT 256 (368)
T ss_pred ccCCCC------Cc---------hhhhHHHHHHhhh-hh-cccCCCCCcceEEEechhhHHHHhhCHHHHHHHHHhcCcE
Confidence 542111 11 1122222222110 10 1112356778999999876679999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEEEEEe
Q 044947 257 VTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYLEYKI 333 (404)
Q Consensus 257 v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~~y~i 333 (404)
++..| +++..||+++|+.|.||||.||+||.|.+|+++|+.||||.|-... .+..+-..+.-++..|..+.+
T Consensus 257 IVrPE---tl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~~--~~s~~vr~~~~~~g~~~~~~v 328 (368)
T COG4421 257 IVRPE---TLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTTN--FRSFWVRMANYMSGDYYPGYV 328 (368)
T ss_pred EEech---hcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCCc--chHHHHHHhhhcccceeeccc
Confidence 98866 8999999999999999999999999999999999999999994322 234444444444444444444
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.18 E-value=1.1 Score=39.47 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=53.2
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-+++++.|.... -..+..+|.+.|..|...+.. +.++.| .+++|||+|..-|.. +-..=|++||++|
T Consensus 27 ~gk~v~VvGrs~~v------G~pla~lL~~~gatV~~~~~~-t~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~V 96 (140)
T cd05212 27 DGKKVLVVGRSGIV------GAPLQCLLQRDGATVYSCDWK-TIQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATV 96 (140)
T ss_pred CCCEEEEECCCchH------HHHHHHHHHHCCCEEEEeCCC-CcCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEE
Confidence 45588999987763 345677788889999988643 345554 589999999988865 3445589999999
Q ss_pred EE
Q 044947 302 MQ 303 (404)
Q Consensus 302 IE 303 (404)
|-
T Consensus 97 id 98 (140)
T cd05212 97 IN 98 (140)
T ss_pred EE
Confidence 84
No 5
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.52 E-value=2.7 Score=41.37 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=55.4
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-+++++.|....+|. +..++...|..|.+.... + ....+.+.+||++|+.-| +++-..=+.+||++|
T Consensus 151 ~Gk~V~ViGrs~~vGrp------la~lL~~~~atVtv~hs~-t---~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavV 220 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRP------MAALLLNADATVTICHSK-T---ENLKAELRQADILVSAAGKAGFITPDMVKPGATV 220 (279)
T ss_pred CCCEEEEECCCccccHH------HHHHHHhCCCeeEEEecC-h---hHHHHHHhhCCEEEECCCcccccCHHHcCCCcEE
Confidence 34589999998775553 555677789998887532 2 233446789999999999 888777788999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 221 IDVg 224 (279)
T PRK14178 221 IDVG 224 (279)
T ss_pred EEee
Confidence 9975
No 6
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=86.45 E-value=3 Score=37.69 Aligned_cols=71 Identities=25% Similarity=0.432 Sum_probs=48.3
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~vI 302 (404)
.-++++|.|....+| -+..+|.+.|..|...... +..+.++ ..+|||+|...| ++|-..=|.+||++||
T Consensus 36 Gk~v~VvGrs~~VG~------Pla~lL~~~~atVt~~h~~-T~~l~~~---~~~ADIVVsa~G~~~~i~~~~ik~gavVI 105 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGK------PLAMLLLNKGATVTICHSK-TKNLQEI---TRRADIVVSAVGKPNLIKADWIKPGAVVI 105 (160)
T ss_dssp T-EEEEE-TTTTTHH------HHHHHHHHTT-EEEEE-TT-SSSHHHH---HTTSSEEEE-SSSTT-B-GGGS-TTEEEE
T ss_pred CCEEEEECCcCCCCh------HHHHHHHhCCCeEEeccCC-CCcccce---eeeccEEeeeeccccccccccccCCcEEE
Confidence 348999999886544 4667788889999987643 4456554 679999998888 6777888999999999
Q ss_pred EE
Q 044947 303 QV 304 (404)
Q Consensus 303 EI 304 (404)
-+
T Consensus 106 Dv 107 (160)
T PF02882_consen 106 DV 107 (160)
T ss_dssp E-
T ss_pred ec
Confidence 76
No 7
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=76.97 E-value=4.1 Score=42.33 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=70.3
Q ss_pred CCCEEEEEecCCC-CCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEec---hhhhhhhhccCCC
Q 044947 223 TKPKLVLVNRNAR-VGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVH---GAGLTHSLFLRPG 298 (404)
Q Consensus 223 ~~prv~~i~R~~~-~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvH---GAgLtn~lF~~pg 298 (404)
.+++|-+|..... ..-.--|.+|+.+.|++.|.++..+-+. ..++ |+++-+.+|.+-|.++ |-.++..|.-+=|
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~-~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGP-ESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECC-CCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 4556777764321 0011247899999999999999766433 3555 8888899998655555 4456666666667
Q ss_pred cEEEEE--eeCCcccccccchHhHHhhcCCeE
Q 044947 299 SVLMQV--VPIGTQWLSTVYFEKPARVLGLEY 328 (404)
Q Consensus 299 s~vIEI--~P~g~~w~~~~~y~~lA~~~gl~Y 328 (404)
.-.+.. .|+|++- ...++..+++.+|+.-
T Consensus 232 iP~i~~~~~P~G~~~-t~~~l~~i~~~~g~~~ 262 (427)
T cd01971 232 QPYIHSPTLPIGAKA-TAEFLRQVAKFAGIEK 262 (427)
T ss_pred CceEecCCCccCHHH-HHHHHHHHHHHhCCCh
Confidence 767766 7899552 3568899999999753
No 8
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.11 E-value=16 Score=36.36 Aligned_cols=72 Identities=18% Similarity=0.342 Sum_probs=53.3
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|.+..|+ -+...|.+.|+.|.+.... +.++. ++.++|||+|.+-| +.+....|++||++|
T Consensus 157 ~Gk~V~viGrs~~mG~------PmA~~L~~~g~tVtv~~~r-T~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavV 226 (296)
T PRK14188 157 SGLNAVVIGRSNLVGK------PMAQLLLAANATVTIAHSR-TRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATV 226 (296)
T ss_pred CCCEEEEEcCCcchHH------HHHHHHHhCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhhcchheecCCCEE
Confidence 3448899998886443 4566777889999998522 34444 45678999887766 567778889999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|.+
T Consensus 227 IDv 229 (296)
T PRK14188 227 IDV 229 (296)
T ss_pred EEc
Confidence 986
No 9
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=73.44 E-value=11 Score=38.10 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=71.1
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe---chhhhhhhhccCCC
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV---HGAGLTHSLFLRPG 298 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv---HGAgLtn~lF~~pg 298 (404)
..++.+-+|.-..... -|..|+.+.|++.|++|..+-+. ..+++ +++-+.+|++-|.+ +|..++..|=-+-|
T Consensus 150 ~~~~~vNlig~~~~~~---~d~~el~~ll~~~G~~v~~~~~~-~~s~~-~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g 224 (399)
T cd00316 150 TEPGSVNLIGGYNLGG---GDLRELKRLLEEMGIRVNALFDG-GTTVE-ELRELGNAKLNLVLCRESGLYLARYLEEKYG 224 (399)
T ss_pred CCCCcEEEECCCCCch---hhHHHHHHHHHHcCCcEEEEcCC-CCCHH-HHHhhccCcEEEEecHhHHHHHHHHHHHHhC
Confidence 4566777777654321 58899999999999999876432 34554 55667788877777 56667777655667
Q ss_pred cEEEEEeeCCcccccccchHhHHhhcCC
Q 044947 299 SVLMQVVPIGTQWLSTVYFEKPARVLGL 326 (404)
Q Consensus 299 s~vIEI~P~g~~w~~~~~y~~lA~~~gl 326 (404)
.-.+...|+|++- ...++..+|+.+|+
T Consensus 225 ~p~~~~~p~G~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 225 IPYILINPIGLEA-TDAFLRKLAELFGI 251 (399)
T ss_pred CCeEEeCCcCHHH-HHHHHHHHHHHhCC
Confidence 7677777999653 35789999999996
No 10
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.39 E-value=17 Score=36.31 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=54.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|.+..|+ -+...|.+.|+.|.+.... +.++. ++.++|||+|.+-| +++....|++||++|
T Consensus 158 ~Gk~V~vIG~s~ivG~------PmA~~L~~~gatVtv~~~~-t~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiV 227 (301)
T PRK14194 158 TGKHAVVIGRSNIVGK------PMAALLLQAHCSVTVVHSR-STDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVV 227 (301)
T ss_pred CCCEEEEECCCCccHH------HHHHHHHHCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhcccHhhccCCcEE
Confidence 3458999999866444 4566778889999998543 34444 45688999887766 567777889999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 228 IDvg 231 (301)
T PRK14194 228 IDVG 231 (301)
T ss_pred EEec
Confidence 9873
No 11
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=72.01 E-value=8.6 Score=34.90 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhh-hhhhccCCCcE
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGL-THSLFLRPGSV 300 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgL-tn~lF~~pgs~ 300 (404)
-...++++|...... ..-+.+.|.+.|.+|.+.. .+..+..+.++.|||+|+..|+.- -..=.++++.+
T Consensus 42 l~gk~vlViG~G~~~------G~~~a~~L~~~g~~V~v~~----r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~v 111 (168)
T cd01080 42 LAGKKVVVVGRSNIV------GKPLAALLLNRNATVTVCH----SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAV 111 (168)
T ss_pred CCCCEEEEECCcHHH------HHHHHHHHhhCCCEEEEEE----CCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeE
Confidence 345688999886531 1136778888899887765 345677789999999999999952 22223477888
Q ss_pred EEEEe
Q 044947 301 LMQVV 305 (404)
Q Consensus 301 vIEI~ 305 (404)
+|.+-
T Consensus 112 iIDla 116 (168)
T cd01080 112 VIDVG 116 (168)
T ss_pred EEEcc
Confidence 88883
No 12
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=71.67 E-value=15 Score=31.25 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccC-CCcEEEEEeeCCcccccccchHhHHh
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLR-PGSVLMQVVPIGTQWLSTVYFEKPAR 322 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~-pgs~vIEI~P~g~~w~~~~~y~~lA~ 322 (404)
++.++.|++ |++|...+ ..+-.+-.+.+..+|++|+-++..++--++-. |+-.+|...--|++..+ -..|+
T Consensus 9 ~~~~~~l~~-~~~v~~~~---~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id----~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD---SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID----LEAAK 80 (133)
T ss_dssp HHHHHHHHH-TSEEEEES---SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-----HHHHH
T ss_pred HHHHHHHHC-CceEEEeC---CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc----HHHHh
Confidence 467788888 88888876 58888889999999999998777676655544 88889988877755322 24567
Q ss_pred hcCCeEE
Q 044947 323 VLGLEYL 329 (404)
Q Consensus 323 ~~gl~Y~ 329 (404)
..|+...
T Consensus 81 ~~gI~V~ 87 (133)
T PF00389_consen 81 ERGIPVT 87 (133)
T ss_dssp HTTSEEE
T ss_pred hCeEEEE
Confidence 7888655
No 13
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.56 E-value=19 Score=35.54 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=53.6
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|.+..||- +...|.+.|..|.+.... +-++ .+..++|||+|.+-| +++....|++||++|
T Consensus 157 ~Gk~v~vIG~S~ivG~P------la~lL~~~gatVtv~~s~-t~~l---~~~~~~ADIVI~avg~~~~v~~~~ik~GavV 226 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKP------MAQLLLDKNATVTLTHSR-TRNL---AEVARKADILVVAIGRGHFVTKEFVKEGAVV 226 (284)
T ss_pred CCCEEEEECCCCcCcHH------HHHHHHHCCCEEEEECCC-CCCH---HHHHhhCCEEEEecCccccCCHHHccCCcEE
Confidence 34489999998765553 556677789999987422 3333 346789999888776 567778899999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|.+
T Consensus 227 IDv 229 (284)
T PRK14179 227 IDV 229 (284)
T ss_pred EEe
Confidence 987
No 14
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.06 E-value=8.6 Score=38.22 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=50.6
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|....||-+... +.+.++..|..|.+.... +..+ .+.+++|||+|+.-|.. +-..=|.+||++|
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~l--L~~~~~~~~atVt~~hs~-t~~l---~~~~~~ADIvI~Avg~~~li~~~~vk~GavV 231 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANL--MLQKLKESNCTVTICHSA-TKDI---PSYTRQADILIAAIGKARFITADMVKPGAVV 231 (295)
T ss_pred CCCEEEEECCCCcchHHHHHH--HHhccccCCCEEEEEeCC-chhH---HHHHHhCCEEEEecCccCccCHHHcCCCCEE
Confidence 344899999999877765433 111122358888877543 3333 44589999999988754 3333356999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 232 IDVg 235 (295)
T PRK14174 232 IDVG 235 (295)
T ss_pred EEee
Confidence 9863
No 15
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.62 E-value=11 Score=37.17 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=53.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|....|| -+..+|.+.|..|.++.-. + .+.-+.+.+|||+|+.-|.. +-..=+.++|++|
T Consensus 157 ~Gk~vvVIGrs~~VG~------pla~lL~~~gatVtv~~s~-t---~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavV 226 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQ------PVSKLLLQKNASVTILHSR-S---KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVI 226 (286)
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-c---hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEE
Confidence 3448999999875333 4566778889999887632 2 23446789999999998887 5555678999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 227 IDvG 230 (286)
T PRK14175 227 IDVG 230 (286)
T ss_pred EEcC
Confidence 9873
No 16
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.24 E-value=18 Score=35.74 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=53.6
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +.++. +.+++|||+|+.-| +++-..=|.+||++|
T Consensus 157 ~Gk~vvViGrS~iVG~P------la~lL~~~~atVt~chs~-t~~l~---~~~~~ADIvI~AvG~p~~i~~~~ik~gavV 226 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKP------VGQLLLNENATVTYCHSK-TKNLA---ELTKQADILIVAVGKPKLITADMVKEGAVV 226 (284)
T ss_pred CCCEEEEECCCCccHHH------HHHHHHHCCCEEEEEeCC-chhHH---HHHHhCCEEEEecCCCCcCCHHHcCCCCEE
Confidence 44589999999886664 455667778999887532 33333 46899999998776 466667778999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 227 IDvG 230 (284)
T PRK14190 227 IDVG 230 (284)
T ss_pred EEee
Confidence 9873
No 17
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.11 E-value=19 Score=35.57 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=53.5
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....|| -+..+|.+.|..|...... +.++. ..+.+||++|..-| +++-+.=|++||++|
T Consensus 157 ~Gk~vvViGrs~iVGk------Pla~lL~~~~atVt~~hs~-t~~l~---~~~~~ADIVV~avG~~~~i~~~~ik~gavV 226 (285)
T PRK14189 157 RGAHAVVIGRSNIVGK------PMAMLLLQAGATVTICHSK-TRDLA---AHTRQADIVVAAVGKRNVLTADMVKPGATV 226 (285)
T ss_pred CCCEEEEECCCCccHH------HHHHHHHHCCCEEEEecCC-CCCHH---HHhhhCCEEEEcCCCcCccCHHHcCCCCEE
Confidence 4558999999887555 4566778889999876532 33333 56789999988777 456667789999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 227 IDV 229 (285)
T PRK14189 227 IDV 229 (285)
T ss_pred EEc
Confidence 876
No 18
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.04 E-value=22 Score=35.15 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=54.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +-++ -+..++|||+|..-| +++-..=|.+||++|
T Consensus 156 ~Gk~vvVvGrS~iVGkP------la~lL~~~~atVtichs~-T~~l---~~~~~~ADIvI~AvG~~~~i~~~~vk~GavV 225 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKP------VAQLLLNENATVTIAHSR-TKDL---PQVAKEADILVVATGLAKFVKKDYIKPGAIV 225 (284)
T ss_pred CCCEEEEECCCCcchHH------HHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 34489999999987665 445566778899887543 3333 345899999988777 677777889999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 226 IDv 228 (284)
T PRK14170 226 IDV 228 (284)
T ss_pred EEc
Confidence 986
No 19
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=67.91 E-value=15 Score=37.33 Aligned_cols=72 Identities=17% Similarity=0.304 Sum_probs=54.7
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.++... +.++ -+..++|||+|..-| +++-..=|.+||++|
T Consensus 213 ~GK~vvVIGRS~iVGkP------la~LL~~~~ATVTicHs~-T~nl---~~~~~~ADIvIsAvGkp~~v~~d~vk~GavV 282 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLP------MSLLLQRHDATVSTVHAF-TKDP---EQITRKADIVIAAAGIPNLVRGSWLKPGAVV 282 (345)
T ss_pred CCCEEEEECCCccccHH------HHHHHHHCCCEEEEEcCC-CCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEE
Confidence 34489999999886664 445677788888877532 4444 456899999887766 678888899999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 283 IDV 285 (345)
T PLN02897 283 IDV 285 (345)
T ss_pred EEc
Confidence 986
No 20
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=67.11 E-value=18 Score=35.64 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=56.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|...+..|.+..-. + ++-.+..++|||+|..-| +++-..=|..||++|
T Consensus 155 ~Gk~~vVVGrS~iVGkP------la~lL~~~naTVtvcHs~-T---~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavV 224 (283)
T COG0190 155 RGKNVVVVGRSNIVGKP------LALLLLNANATVTVCHSR-T---KDLASITKNADIVVVAVGKPHFIKADMVKPGAVV 224 (283)
T ss_pred CCCEEEEECCCCcCcHH------HHHHHHhCCCEEEEEcCC-C---CCHHHHhhhCCEEEEecCCccccccccccCCCEE
Confidence 45589999999987775 455677789999887532 2 556677899999998877 678888899999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 225 IDV 227 (283)
T COG0190 225 IDV 227 (283)
T ss_pred Eec
Confidence 986
No 21
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=66.76 E-value=42 Score=34.29 Aligned_cols=97 Identities=19% Similarity=0.086 Sum_probs=67.0
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEec---hhhhhhhhccCCCc
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVH---GAGLTHSLFLRPGS 299 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvH---GAgLtn~lF~~pgs 299 (404)
.+..|-+|.-... .-|..|+.+.|++.|+++..+-+. ..+++|- +.+.+|.+-|.+. |-.++..|-=+-|.
T Consensus 159 ~~~~VNiig~~~~----~~d~~el~~lL~~~Gi~~~~~~~~-~~~~~~i-~~~~~A~~niv~~~~~~~~~a~~L~~r~Gi 232 (406)
T cd01967 159 TPYDVNIIGEYNI----GGDAWVIKPLLEELGIRVNATFTG-DGTVDEL-RRAHRAKLNLVHCSRSMNYLAREMEERYGI 232 (406)
T ss_pred CCCeEEEEecccc----chhHHHHHHHHHHcCCEEEEEeCC-CCCHHHH-hhCccCCEEEEEChHHHHHHHHHHHHhhCC
Confidence 4557777764321 238899999999999999875443 4666555 5588888766654 44455555445566
Q ss_pred EEEEEeeCCcccccccchHhHHhhcCC
Q 044947 300 VLMQVVPIGTQWLSTVYFEKPARVLGL 326 (404)
Q Consensus 300 ~vIEI~P~g~~w~~~~~y~~lA~~~gl 326 (404)
-.+...|+|++- ...++..+++.+|.
T Consensus 233 P~~~~~p~G~~~-t~~~l~~l~~~lg~ 258 (406)
T cd01967 233 PYMEVNFYGFED-TSESLRKIAKFFGD 258 (406)
T ss_pred CEEEecCCcHHH-HHHHHHHHHHHhCC
Confidence 567778888652 45688999999997
No 22
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.62 E-value=22 Score=35.17 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||. +..+|.+.|..|.++... + .+..+.+++|||+|+.-| ++|-..=|.+||++|
T Consensus 156 ~Gk~vvVvGrs~~VG~P------la~lL~~~gAtVtv~hs~-t---~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavV 225 (285)
T PRK14191 156 KGKDVVIIGASNIVGKP------LAMLMLNAGASVSVCHIL-T---KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVV 225 (285)
T ss_pred CCCEEEEECCCchhHHH------HHHHHHHCCCEEEEEeCC-c---HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEE
Confidence 34589999998765553 455677789999887422 2 233467899999988777 455555677999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 226 IDvG 229 (285)
T PRK14191 226 VDIG 229 (285)
T ss_pred EEee
Confidence 9874
No 23
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.75 E-value=29 Score=34.37 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=54.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +.++. ...++|||+|+.-| +++-..=|.+||++|
T Consensus 158 ~Gk~vvViGrS~iVGkP------la~lL~~~~atVt~chs~-T~~l~---~~~~~ADIvIsAvGk~~~i~~~~ik~gavV 227 (284)
T PRK14177 158 TGKNAVVVGRSPILGKP------MAMLLTEMNATVTLCHSK-TQNLP---SIVRQADIIVGAVGKPEFIKADWISEGAVL 227 (284)
T ss_pred CCCEEEEECCCCcchHH------HHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEeCCCcCccCHHHcCCCCEE
Confidence 34488999999876654 455677789999887643 44444 45899999987766 567777789999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 228 IDv 230 (284)
T PRK14177 228 LDA 230 (284)
T ss_pred EEe
Confidence 986
No 24
>PRK13337 putative lipid kinase; Reviewed
Probab=64.51 E-value=41 Score=33.07 Aligned_cols=69 Identities=13% Similarity=0.248 Sum_probs=46.7
Q ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH--hhCCeEEEechhhhhhhhc---cCCC-cEEEEEeeCC
Q 044947 240 ILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI--HSCHAMVGVHGAGLTHSLF---LRPG-SVLMQVVPIG 308 (404)
Q Consensus 240 i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlVGvHGAgLtn~lF---~~pg-s~vIEI~P~g 308 (404)
-...+++.+.+++.|+++.+...+......+.++.. ...|+||.+=|=|-.|.+- +..+ ...|=|+|.|
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 345678899999999887655444346666666554 3578999999988755432 3222 3458889998
No 25
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.44 E-value=20 Score=35.41 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~vI 302 (404)
.-++++|.|....||- +..+|.+.|..|.+.... +.++. +..++|||+|..-| +++-..=|.+||++||
T Consensus 158 Gk~vvViGrS~~VGkP------la~lL~~~~ATVt~chs~-T~dl~---~~~k~ADIvIsAvGkp~~i~~~~vk~gavVI 227 (282)
T PRK14180 158 GAYAVVVGASNVVGKP------VSQLLLNAKATVTTCHRF-TTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVVI 227 (282)
T ss_pred CCEEEEECCCCcchHH------HHHHHHHCCCEEEEEcCC-CCCHH---HHhhhcCEEEEccCCcCcCCHHHcCCCcEEE
Confidence 4489999999887664 445667778899887532 33444 45899999988777 5677777899999999
Q ss_pred EE
Q 044947 303 QV 304 (404)
Q Consensus 303 EI 304 (404)
-+
T Consensus 228 Dv 229 (282)
T PRK14180 228 DV 229 (282)
T ss_pred Ee
Confidence 86
No 26
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=64.03 E-value=21 Score=33.48 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEec--------------CCCC--CCHHH-HHHHHhhCCeEEEec
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFE--------------PEES--TSLAD-SFRFIHSCHAMVGVH 285 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~--------------~~~~--~~~~e-q~~~~~~advlVGvH 285 (404)
..-++++|.|....||- +..+|.+.|..|.+++ ...+ .+... -.+.+++|||+|..-
T Consensus 61 ~GK~vvVIGrS~iVGkP------la~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 61 YGKTITIINRSEVVGRP------LAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCEEEEECCCccchHH------HHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 45589999999876654 4556777899998873 1101 12222 235689999998877
Q ss_pred hh-hh-hhhhccCCCcEEEEE
Q 044947 286 GA-GL-THSLFLRPGSVLMQV 304 (404)
Q Consensus 286 GA-gL-tn~lF~~pgs~vIEI 304 (404)
|- ++ -..=|.+||++||-+
T Consensus 135 G~~~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 135 PSPNYKVPTELLKDGAICINF 155 (197)
T ss_pred CCCCCccCHHHcCCCcEEEEc
Confidence 74 44 577789999999985
No 27
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.97 E-value=29 Score=34.25 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=53.7
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~vI 302 (404)
.-++++|.|....||- +..+|.+.|..|.+.... +.++. +..++|||+|..-| +++-..=|.+||++||
T Consensus 156 Gk~vvViGrS~iVGkP------la~lL~~~~atVtichs~-T~~l~---~~~~~ADIvI~AvG~p~~i~~~~vk~GavVI 225 (282)
T PRK14169 156 GKRVVIVGRSNIVGRP------LAGLMVNHDATVTIAHSK-TRNLK---QLTKEADILVVAVGVPHFIGADAVKPGAVVI 225 (282)
T ss_pred CCEEEEECCCccchHH------HHHHHHHCCCEEEEECCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCcEEE
Confidence 3489999999876654 455677779998887533 44444 46899999887766 6777788999999999
Q ss_pred EE
Q 044947 303 QV 304 (404)
Q Consensus 303 EI 304 (404)
-+
T Consensus 226 Dv 227 (282)
T PRK14169 226 DV 227 (282)
T ss_pred Ee
Confidence 86
No 28
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.93 E-value=29 Score=34.22 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=53.4
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +.++. +...+|||+|..-| +++-..=|.+||++|
T Consensus 157 ~Gk~vvViGrS~~VGkP------la~lL~~~~AtVt~chs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavV 226 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKP------VAQLLLNENATVTICHSK-TKNLK---EVCKKADILVVAIGRPKFIDEEYVKEGAIV 226 (278)
T ss_pred CCCEEEEECCCccchHH------HHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCcEE
Confidence 34489999999876654 455677789999887633 34444 45788999988766 567677789999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 227 IDv 229 (278)
T PRK14172 227 IDV 229 (278)
T ss_pred EEe
Confidence 986
No 29
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.49 E-value=31 Score=34.12 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=53.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +.++. ...++|||+|..-| +++-..=|.+||++|
T Consensus 156 ~Gk~vvViGrS~iVGkP------la~lL~~~~AtVtichs~-T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiV 225 (282)
T PRK14182 156 KGKRALVVGRSNIVGKP------MAMMLLERHATVTIAHSR-TADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVV 225 (282)
T ss_pred CCCEEEEECCCCcchHH------HHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 34489999999886664 455677778888887543 44454 46789999988776 567777789999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 226 IDv 228 (282)
T PRK14182 226 IDV 228 (282)
T ss_pred EEe
Confidence 986
No 30
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.24 E-value=31 Score=34.18 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=52.7
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~vI 302 (404)
.-++++|.|....||- +..+|.+.|..|.+.... +.++. +..++|||+|..-| +++-..=|.+||++||
T Consensus 159 GK~vvViGrS~iVGkP------la~lL~~~~ATVtichs~-T~~L~---~~~~~ADIvV~AvGkp~~i~~~~vk~GavVI 228 (288)
T PRK14171 159 GKNVVIIGRSNIVGKP------LSALLLKENCSVTICHSK-THNLS---SITSKADIVVAAIGSPLKLTAEYFNPESIVI 228 (288)
T ss_pred CCEEEEECCCCcchHH------HHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCCCccCHHHcCCCCEEE
Confidence 3379999999876654 455677778888876532 44444 45788999998777 5666677899999999
Q ss_pred EE
Q 044947 303 QV 304 (404)
Q Consensus 303 EI 304 (404)
-+
T Consensus 229 Dv 230 (288)
T PRK14171 229 DV 230 (288)
T ss_pred Ee
Confidence 86
No 31
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.98 E-value=25 Score=34.73 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.. ..+-++ .+.+++|||+|..-| ++|-..=|.+||++|
T Consensus 156 ~Gk~vvViGrS~~VG~P------la~lL~~~~AtVti~h-s~T~~l---~~~~~~ADIvV~AvGkp~~i~~~~vk~gavv 225 (281)
T PRK14183 156 KGKDVCVVGASNIVGKP------MAALLLNANATVDICH-IFTKDL---KAHTKKADIVIVGVGKPNLITEDMVKEGAIV 225 (281)
T ss_pred CCCEEEEECCCCcchHH------HHHHHHHCCCEEEEeC-CCCcCH---HHHHhhCCEEEEecCcccccCHHHcCCCcEE
Confidence 34489999999876654 4556777788888664 223334 357899999988777 677777889999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 226 IDvG 229 (281)
T PRK14183 226 IDIG 229 (281)
T ss_pred EEee
Confidence 9863
No 32
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=62.88 E-value=31 Score=36.92 Aligned_cols=103 Identities=21% Similarity=0.338 Sum_probs=72.8
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCC--C
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRP--G 298 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~p--g 298 (404)
..+++|-+|.=..-..+.--|..||.+.|++.|.+|..+-+. ..+ -++++-+.+|++-|.+++ .|..=.-+|.. |
T Consensus 156 ~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~-g~s-~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fG 233 (519)
T PRK02910 156 TARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPL-GAS-PADLKRLPAAWFNVVLYREIGESAARYLEREFG 233 (519)
T ss_pred CCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCC-CCC-HHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhC
Confidence 456778888643321244567889999999999999876554 344 566777999999998887 56655566553 4
Q ss_pred cEEEEEeeCCcccccccchHhHHhhcCCe
Q 044947 299 SVLMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 299 s~vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.-.+...|.|++- ...+...+|+.+|+.
T Consensus 234 iP~i~~~PiG~~~-T~~fL~~la~~~g~~ 261 (519)
T PRK02910 234 QPYVKTVPIGVGA-TARFIREVAELLNLD 261 (519)
T ss_pred CcccccccccHHH-HHHHHHHHHHHhCCC
Confidence 4456778999542 356788899998875
No 33
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=62.44 E-value=30 Score=35.39 Aligned_cols=72 Identities=15% Similarity=0.343 Sum_probs=54.4
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +.++. +..++|||+|..-| +++-..=|.+||++|
T Consensus 230 ~GK~vvVIGRS~iVGkP------La~LL~~~~ATVTicHs~-T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvV 299 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMP------AALLLQREDATVSIVHSR-TKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVV 299 (364)
T ss_pred CCCEEEEECCCccccHH------HHHHHHHCCCeEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEE
Confidence 34489999999876664 455677778888887543 44444 45799999887766 677778889999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 300 IDV 302 (364)
T PLN02616 300 IDV 302 (364)
T ss_pred Eec
Confidence 986
No 34
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.32 E-value=32 Score=34.29 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=52.7
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~vI 302 (404)
.-++++|.|....||- +..+|.+.|..|.+.... +.++. ...++|||+|..-| +++-..=|.+||++||
T Consensus 158 Gk~vvVIGrS~iVGkP------la~lL~~~~atVtv~hs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVI 227 (297)
T PRK14186 158 GKKAVVVGRSILVGKP------LALMLLAANATVTIAHSR-TQDLA---SITREADILVAAAGRPNLIGAEMVKPGAVVV 227 (297)
T ss_pred CCEEEEECCCccchHH------HHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 4489999999876654 455677789999887543 44444 45789999998776 4566666899999999
Q ss_pred EE
Q 044947 303 QV 304 (404)
Q Consensus 303 EI 304 (404)
-+
T Consensus 228 Dv 229 (297)
T PRK14186 228 DV 229 (297)
T ss_pred Ee
Confidence 86
No 35
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=62.18 E-value=24 Score=31.39 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCeEEEecCCC-CCCHHHHHHHHhh--CCeEEEechhhhhh
Q 044947 245 EVKKAAEELGFDVTIFEPEE-STSLADSFRFIHS--CHAMVGVHGAGLTH 291 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~-~~~~~eq~~~~~~--advlVGvHGAgLtn 291 (404)
.|.+.|++.|++|+....+. ..++.+.+...+. +|++|..|-.+-.+
T Consensus 33 ~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 33 KLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 34556666799998776542 3689999999986 99999999877766
No 36
>PRK13059 putative lipid kinase; Reviewed
Probab=61.98 E-value=48 Score=32.46 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=53.0
Q ss_pred EEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH-HH-hhCCeEEEechhhhhhhh---ccCCC-cEE
Q 044947 228 VLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFR-FI-HSCHAMVGVHGAGLTHSL---FLRPG-SVL 301 (404)
Q Consensus 228 ~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~-~~-~~advlVGvHGAgLtn~l---F~~pg-s~v 301 (404)
+|++-....+|.-...+++.+.+++.|+++.+......... ++++ .. ..+|+||.+=|=|-.|.+ .+..+ ..-
T Consensus 6 ~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~ 84 (295)
T PRK13059 6 FIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLP 84 (295)
T ss_pred EEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCc
Confidence 34443333223233456788899999999876554422232 3332 22 356999999999966543 13222 345
Q ss_pred EEEeeCCcccccccchHhHHhhcCC
Q 044947 302 MQVVPIGTQWLSTVYFEKPARVLGL 326 (404)
Q Consensus 302 IEI~P~g~~w~~~~~y~~lA~~~gl 326 (404)
+=|+|.|.. ..+|+.+|+
T Consensus 85 lgviP~GTg-------NdfAr~lgi 102 (295)
T PRK13059 85 IGILPVGTA-------NDFAKFLGM 102 (295)
T ss_pred EEEECCCCH-------hHHHHHhCC
Confidence 888999921 245566655
No 37
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=61.19 E-value=20 Score=31.84 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=34.4
Q ss_pred HHHHHHHcCCeEEEecCCC-CCCHHHHHHHH--hhCCeEEEechhhhh
Q 044947 246 VKKAAEELGFDVTIFEPEE-STSLADSFRFI--HSCHAMVGVHGAGLT 290 (404)
Q Consensus 246 v~~~l~~~gf~v~~~~~~~-~~~~~eq~~~~--~~advlVGvHGAgLt 290 (404)
|.+.|++.|++|....... ..++.+.++.. ..+|++|..|--+..
T Consensus 33 l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~ 80 (175)
T PF01520_consen 33 LKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASN 80 (175)
T ss_dssp HHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SS
T ss_pred HHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCcc
Confidence 4556666799998876652 47899999999 789999999976553
No 38
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=60.63 E-value=34 Score=35.50 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=70.8
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEec---hhhhhhhhccCCCc
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVH---GAGLTHSLFLRPGS 299 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvH---GAgLtn~lF~~pgs 299 (404)
.+++|-+|.-..-....--|..|+.+.|++.|.+|..+-+. ..++ |+++-+.+|++-|.++ |..++..|--+-|.
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~~~-~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~Gi 238 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPE-GASV-DDLNELPKAWFNIVPYREYGLSAALYLEEEFGM 238 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcC-CCCH-HHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCC
Confidence 45567777654322244567889999999999999875443 3455 4556677788776654 45566666656677
Q ss_pred EEEEEeeCCcccccccchHhHHhhcCCe
Q 044947 300 VLMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 300 ~vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
-.+...|+|++- ...+...+++.+|+.
T Consensus 239 P~~~~~p~G~~~-t~~~l~~i~~~~g~~ 265 (430)
T cd01981 239 PSVKITPIGVVA-TARFLREIQELLGIQ 265 (430)
T ss_pred CeEeccCCChHH-HHHHHHHHHHHhCCc
Confidence 677779999542 456888999999976
No 39
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.17 E-value=37 Score=33.59 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +.++ -+..++|||+|..-| +++-..=|.+||++|
T Consensus 156 ~Gk~vvVvGrS~iVGkP------la~lL~~~~atVt~chs~-T~nl---~~~~~~ADIvIsAvGkp~~i~~~~vk~GavV 225 (282)
T PRK14166 156 EGKDAVIIGASNIVGRP------MATMLLNAGATVSVCHIK-TKDL---SLYTRQADLIIVAAGCVNLLRSDMVKEGVIV 225 (282)
T ss_pred CCCEEEEECCCCcchHH------HHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEcCCCcCccCHHHcCCCCEE
Confidence 34489999999887664 455667778999877532 3333 346899999888776 677777789999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 226 IDv 228 (282)
T PRK14166 226 VDV 228 (282)
T ss_pred EEe
Confidence 986
No 40
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.08 E-value=33 Score=33.93 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=53.4
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +-.+ -..+.+|||+|..-| +++-..=|.++|++|
T Consensus 158 ~Gk~vvViGrs~iVG~P------la~lL~~~~atVtv~hs~-T~~l---~~~~~~ADIvi~avG~p~~v~~~~vk~gavV 227 (285)
T PRK10792 158 YGLNAVVVGASNIVGRP------MSLELLLAGCTVTVCHRF-TKNL---RHHVRNADLLVVAVGKPGFIPGEWIKPGAIV 227 (285)
T ss_pred CCCEEEEECCCcccHHH------HHHHHHHCCCeEEEEECC-CCCH---HHHHhhCCEEEEcCCCcccccHHHcCCCcEE
Confidence 34588999998865543 556677789999887532 3333 346899999998876 566666778999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 228 IDvG 231 (285)
T PRK10792 228 IDVG 231 (285)
T ss_pred EEcc
Confidence 9874
No 41
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.30 E-value=37 Score=33.62 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=52.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +.++. ...++|||+|..-| +++-..=|.+||++|
T Consensus 154 ~Gk~vvViGrS~iVGkP------la~lL~~~~aTVtichs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~vk~GavV 223 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKP------LAALLLREDATVTLAHSK-TQDLP---AVTRRADVLVVAVGRPHLITPEMVRPGAVV 223 (287)
T ss_pred CCCEEEEECCCCccHHH------HHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 34489999999886654 445566778888877533 44444 56789999988776 566666788999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 224 IDV 226 (287)
T PRK14173 224 VDV 226 (287)
T ss_pred EEc
Confidence 986
No 42
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=59.16 E-value=72 Score=31.63 Aligned_cols=93 Identities=25% Similarity=0.343 Sum_probs=62.3
Q ss_pred EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHh--hCCeEEEechhhhhh----hhccCCCcE
Q 044947 227 LVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIH--SCHAMVGVHGAGLTH----SLFLRPGSV 300 (404)
Q Consensus 227 v~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~--~advlVGvHGAgLtn----~lF~~pgs~ 300 (404)
.+++.+....+.--...+++.+.|++.|+++.+...+..-...+-++.+. .-|.||+.=|-|..| .|+-.+...
T Consensus 6 ~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~ 85 (301)
T COG1597 6 LLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP 85 (301)
T ss_pred EEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc
Confidence 35555555433445557789999999999987765542224444444443 789999999998655 666555554
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
|=|+|.|. ....|+.+|+.
T Consensus 86 -LgilP~GT-------~NdfAr~Lgip 104 (301)
T COG1597 86 -LGILPGGT-------ANDFARALGIP 104 (301)
T ss_pred -eEEecCCc-------hHHHHHHcCCC
Confidence 88999992 13567777764
No 43
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=58.54 E-value=28 Score=31.91 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCeEEEecCCCC---------------CCHHHHHHHHh--hCCeEEEechhhhhh
Q 044947 245 EVKKAAEELGFDVTIFEPEES---------------TSLADSFRFIH--SCHAMVGVHGAGLTH 291 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~~---------------~~~~eq~~~~~--~advlVGvHGAgLtn 291 (404)
.|.+.|++.|++|+....+.. .++.+.+.+.+ .+|++|+.|--+..+
T Consensus 34 ~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 34 KLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 345666777999986655421 26888888887 589999999876543
No 44
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=58.33 E-value=40 Score=33.59 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=53.4
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +-++. +...+|||+|..-| +++-..=|.+||++|
T Consensus 166 ~Gk~vvVIGRS~iVGkP------la~lL~~~~ATVtvchs~-T~nl~---~~~~~ADIvv~AvGk~~~i~~~~vk~gavV 235 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLP------VSLLLLKADATVTVVHSR-TPDPE---SIVREADIVIAAAGQAMMIKGDWIKPGAAV 235 (299)
T ss_pred CCCEEEEECCCccchHH------HHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEE
Confidence 34589999999887664 445667779999887643 44444 45799999887766 456666688999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 236 IDvG 239 (299)
T PLN02516 236 IDVG 239 (299)
T ss_pred EEee
Confidence 9863
No 45
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=58.27 E-value=52 Score=32.48 Aligned_cols=82 Identities=12% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCeEEEecCCCC-C-----CHH-HHHHHHhhCCeEEEe----------chh------hh--hhhhccCCC
Q 044947 244 REVKKAAEELGFDVTIFEPEES-T-----SLA-DSFRFIHSCHAMVGV----------HGA------GL--THSLFLRPG 298 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~-~-----~~~-eq~~~~~~advlVGv----------HGA------gL--tn~lF~~pg 298 (404)
-++++.|.+.|++|.+..+... . .+. ..-+.+.+||++|.+ ++. ++ ..+=-||+|
T Consensus 15 ~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~ 94 (296)
T PRK08306 15 LELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH 94 (296)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC
Confidence 4788999999999998654311 1 122 223568999999988 433 22 335568999
Q ss_pred cEEEEEeeCCcccccccchHhHHhhcCCeEEEEE
Q 044947 299 SVLMQVVPIGTQWLSTVYFEKPARVLGLEYLEYK 332 (404)
Q Consensus 299 s~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~~y~ 332 (404)
..++ .... .+.....+...|+..+.|.
T Consensus 95 ~~v~--~G~~-----~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 95 CTIF--SGIA-----NPYLKELAKETNRKLVELF 121 (296)
T ss_pred CEEE--EecC-----CHHHHHHHHHCCCeEEEEe
Confidence 7554 2222 2335577888999988764
No 46
>PRK13055 putative lipid kinase; Reviewed
Probab=58.20 E-value=59 Score=32.55 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=54.9
Q ss_pred EEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCC-CCCCHHHHHHHH--hhCCeEEEechhhhhhhhc---cC-CCcE
Q 044947 228 VLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPE-ESTSLADSFRFI--HSCHAMVGVHGAGLTHSLF---LR-PGSV 300 (404)
Q Consensus 228 ~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~~~~eq~~~~--~~advlVGvHGAgLtn~lF---~~-pgs~ 300 (404)
+|++-....++.-...+++.+.|++.|+++.+.... ......+.++.. ...|+||.+=|=|-.|.+- +. ....
T Consensus 7 iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~ 86 (334)
T PRK13055 7 LIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRP 86 (334)
T ss_pred EEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCC
Confidence 344444333343344678889999999887654332 123444544433 4579999999999655333 22 2234
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.+=|+|.|.- ..+|+.+|+.
T Consensus 87 ~LgiiP~GTg-------NdfAr~Lgi~ 106 (334)
T PRK13055 87 KMAIIPAGTT-------NDYARALKIP 106 (334)
T ss_pred cEEEECCCch-------hHHHHHcCCC
Confidence 5889999921 2456666653
No 47
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.58 E-value=43 Score=33.22 Aligned_cols=72 Identities=15% Similarity=0.319 Sum_probs=52.3
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCC
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEEL----GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRP 297 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~p 297 (404)
..-++++|.|....||-+ ..+|.+. +..|.+.... +.++.+ ..++|||+|..-| +++-..=|.+|
T Consensus 152 ~Gk~vvViGrS~iVGkPl------a~lL~~~~~~~~AtVtvchs~-T~~l~~---~~~~ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPL------AALLMQKHPDTNATVTLLHSQ-SENLTE---ILKTADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred CCCEEEEECCCccchHHH------HHHHHhCcCCCCCEEEEeCCC-CCCHHH---HHhhCCEEEEccCCcCccCHHHcCC
Confidence 344899999998876654 4456555 6788876532 444443 4799999988766 56777778999
Q ss_pred CcEEEEE
Q 044947 298 GSVLMQV 304 (404)
Q Consensus 298 gs~vIEI 304 (404)
|++||-+
T Consensus 222 GavVIDv 228 (287)
T PRK14181 222 KAVIVDV 228 (287)
T ss_pred CCEEEEe
Confidence 9999986
No 48
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=57.34 E-value=20 Score=34.39 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=42.6
Q ss_pred EEEEEecCCC----CCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhC
Q 044947 226 KLVLVNRNAR----VGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSC 278 (404)
Q Consensus 226 rv~~i~R~~~----~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~a 278 (404)
-+.|++|++- ....|.|.+.+.+..+++||+|+.++ ..+++|-++.+.++
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evd---G~d~~~i~~a~~~~ 226 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVD---GHDIEEIVEALEKA 226 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEc---CcCHHHHHHHHHhh
Confidence 5688898873 23789999999999999999999998 68899998888776
No 49
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=57.17 E-value=20 Score=37.20 Aligned_cols=102 Identities=23% Similarity=0.279 Sum_probs=67.7
Q ss_pred CCCEEEEEecCCCCCcc-ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hh--hhhhhccCCC
Q 044947 223 TKPKLVLVNRNARVGRT-ILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AG--LTHSLFLRPG 298 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~-i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-Ag--Ltn~lF~~pg 298 (404)
.++.|-+|.-.....+. --|..|+.+.|++.|++|+.+-.. ..+++| ++-+.+|.+-|.++. +| ++..|-=+=|
T Consensus 160 ~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~-~~~~~e-i~~~~~A~lniv~~~~~g~~~a~~Lee~~G 237 (426)
T cd01972 160 QEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAG-GCSVEE-LERASEAAANVTLCLDLGYYLGAALEQRFG 237 (426)
T ss_pred CCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCC-CCCHHH-HHhcccCCEEEEEChhHHHHHHHHHHHHhC
Confidence 34567777654321011 357889999999999999876543 355555 566888888887774 44 4444444456
Q ss_pred cEEEEE-eeCCcccccccchHhHHhhcCCe
Q 044947 299 SVLMQV-VPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 299 s~vIEI-~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.-.+++ +|+|++- ...++..+|+.+|+.
T Consensus 238 iP~~~~~~P~G~~~-T~~~l~~ia~~~g~~ 266 (426)
T cd01972 238 VPEIKAPQPYGIEA-TDKWLREIAKVLGME 266 (426)
T ss_pred CCeEecCCccCHHH-HHHHHHHHHHHhCCc
Confidence 667776 6899542 356888999988873
No 50
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=56.79 E-value=50 Score=32.48 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCeEEEecCCC------------CCCHHHHHHHHhhCCeEEEechhhhhhh---hccCCCcEEEEEeeCCc
Q 044947 245 EVKKAAEELGFDVTIFEPEE------------STSLADSFRFIHSCHAMVGVHGAGLTHS---LFLRPGSVLMQVVPIGT 309 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~------------~~~~~eq~~~~~~advlVGvHGAgLtn~---lF~~pgs~vIEI~P~g~ 309 (404)
.+.+.|+..|.+|.+.+... ..++.+.-+.+.++|++|-.-..++.+. -.|++++.+|.+.-..
T Consensus 165 avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P- 243 (287)
T TIGR02853 165 TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP- 243 (287)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC-
Confidence 34555555666655543211 1233444567789999998766665332 2478999999986321
Q ss_pred ccccccchHhHHhhcCCeEEE
Q 044947 310 QWLSTVYFEKPARVLGLEYLE 330 (404)
Q Consensus 310 ~w~~~~~y~~lA~~~gl~Y~~ 330 (404)
..+.| ..|+..|++..-
T Consensus 244 ---g~tdf-~~Ak~~G~~a~~ 260 (287)
T TIGR02853 244 ---GGTDF-EYAKKRGIKALL 260 (287)
T ss_pred ---CCCCH-HHHHHCCCEEEE
Confidence 24567 789999998774
No 51
>PRK11914 diacylglycerol kinase; Reviewed
Probab=56.12 E-value=51 Score=32.36 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=50.6
Q ss_pred EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH--hhCCeEEEechhhhhhhhc---cCCCcEE
Q 044947 227 LVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI--HSCHAMVGVHGAGLTHSLF---LRPGSVL 301 (404)
Q Consensus 227 v~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlVGvHGAgLtn~lF---~~pgs~v 301 (404)
++|++-....++.-...+++++.|++.|+++.++.....-...++++.. ..+|+||.+=|=|-.|.+= +..+ .-
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~~-~~ 90 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAGTD-IP 90 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccCC-Cc
Confidence 3344433333344445678899999999987665543223455555433 4579999999988755442 2332 45
Q ss_pred EEEeeCC
Q 044947 302 MQVVPIG 308 (404)
Q Consensus 302 IEI~P~g 308 (404)
+=|+|.|
T Consensus 91 lgiiP~G 97 (306)
T PRK11914 91 LGIIPAG 97 (306)
T ss_pred EEEEeCC
Confidence 8889999
No 52
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.11 E-value=48 Score=32.97 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=53.5
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~vI 302 (404)
.-++++|.|....||- +..+|.+.|..|.+.... +-++. +..++|||+|..-| +++-..=|.++|++||
T Consensus 160 Gk~vvViGrS~iVGkP------la~lL~~~~aTVt~chs~-T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVI 229 (294)
T PRK14187 160 GSDAVVIGRSNIVGKP------MACLLLGENCTVTTVHSA-TRDLA---DYCSKADILVAAVGIPNFVKYSWIKKGAIVI 229 (294)
T ss_pred CCEEEEECCCccchHH------HHHHHhhCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 4488999999876654 455677789999887643 44444 46899999988777 5666777889999999
Q ss_pred EE
Q 044947 303 QV 304 (404)
Q Consensus 303 EI 304 (404)
-+
T Consensus 230 DV 231 (294)
T PRK14187 230 DV 231 (294)
T ss_pred Ee
Confidence 86
No 53
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.57 E-value=46 Score=32.97 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
..-++++|.|....||- +..+|.+.|..|.+.... +-.+ -+...+|||+|..-| +++-..=|.+||++|
T Consensus 163 ~Gk~vvViGrs~iVGkP------la~lL~~~~atVtv~hs~-T~~l---~~~~~~ADIvv~AvG~p~~i~~~~vk~gavV 232 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKP------MAAMLLNRNATVSVCHVF-TDDL---KKYTLDADILVVATGVKHLIKADMVKEGAVI 232 (287)
T ss_pred CCCEEEEECCCcccHHH------HHHHHHHCCCEEEEEecc-CCCH---HHHHhhCCEEEEccCCccccCHHHcCCCcEE
Confidence 34488999998865553 556677789999887633 3333 446799999986444 566677789999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 233 IDvG 236 (287)
T PRK14176 233 FDVG 236 (287)
T ss_pred EEec
Confidence 9873
No 54
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=54.24 E-value=10 Score=38.55 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=71.1
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhh-hhhccCC--C
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLT-HSLFLRP--G 298 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLt-n~lF~~p--g 298 (404)
.+++.|-+|....-. .-|..|+.+.|++.|++|...-+. ..++ |+++-+.+|++-|.++..+.. =+=+|.. |
T Consensus 142 ~~~~~VNiiG~~~~~---~~d~~el~~lL~~~Gi~v~~~~~~-~~t~-~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~g 216 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLG---PGDLEELKRLLEELGIEVNAVFPG-GTTL-EEIRKAPEAALNIVLCPEGGPYAAEWLEERFG 216 (398)
T ss_dssp TSSSEEEEEEESTBT---HHHHHHHHHHHHHTTEEEEEEEET-TBCH-HHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCceEEecCcCCC---cccHHHHHHHHHHCCCceEEEeCC-CCCH-HHHHhCCcCcEEEEeccchhhHHHHHHHHHhC
Confidence 445588888765431 168889999999999998876544 3555 456788999999998888665 4455555 7
Q ss_pred cEEEE-EeeCCcccccccchHhHHhhcC
Q 044947 299 SVLMQ-VVPIGTQWLSTVYFEKPARVLG 325 (404)
Q Consensus 299 s~vIE-I~P~g~~w~~~~~y~~lA~~~g 325 (404)
.-.+. -.|+|++. ...+|..+|+.+|
T Consensus 217 iP~~~~~~p~G~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 217 IPYLYFPSPYGIEG-TDAWLRAIAEALG 243 (398)
T ss_dssp -EEEEEC-SBSHHH-HHHHHHHHHHHHT
T ss_pred CCeeeccccccHHH-HHHHHHHHHHHhC
Confidence 77777 68999654 3579999999999
No 55
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=53.51 E-value=1.4e+02 Score=25.21 Aligned_cols=90 Identities=26% Similarity=0.396 Sum_probs=54.9
Q ss_pred EEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH---HhhC-CeEEEechhhhhhhhc----cCCC-
Q 044947 228 VLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRF---IHSC-HAMVGVHGAGLTHSLF----LRPG- 298 (404)
Q Consensus 228 ~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~---~~~a-dvlVGvHGAgLtn~lF----~~pg- 298 (404)
+|++-+...++.- ..++.+.+++.+.++.+...+ .....+++.. .... |++|.+=|-|-.|.+. -...
T Consensus 4 vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~ 80 (130)
T PF00781_consen 4 VIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETE-SAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSDRE 80 (130)
T ss_dssp EEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEES-STTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSS
T ss_pred EEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEe-ccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcCCC
Confidence 4555444433333 478899999998887766655 3556666553 4555 8999999999777654 2222
Q ss_pred -cEEEEEeeCCcccccccchHhHHhhcCCe
Q 044947 299 -SVLMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 299 -s~vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
...|=++|.|.. -.+|+.+|+.
T Consensus 81 ~~~~l~iiP~GT~-------N~~ar~lg~~ 103 (130)
T PF00781_consen 81 DKPPLGIIPAGTG-------NDFARSLGIP 103 (130)
T ss_dssp S--EEEEEE-SSS--------HHHHHTT--
T ss_pred ccceEEEecCCCh-------hHHHHHcCCC
Confidence 347889999931 2456666654
No 56
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=53.14 E-value=71 Score=27.79 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCC-CCCCHHHH-------------HHHHhhCCeEEEechhhhhhhhccCCCcEEEE
Q 044947 238 RTILNLREVKKAAEELGFDVTIFEPE-ESTSLADS-------------FRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQ 303 (404)
Q Consensus 238 R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~~~~eq-------------~~~~~~advlVGvHGAgLtn~lF~~pgs~vIE 303 (404)
||+-=..+.++.|.+.|++|.+-... ....|.++ -+++..||||+++..-...-.-.|++|.++|=
T Consensus 11 ~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li~ 90 (136)
T PF05222_consen 11 RRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLIG 90 (136)
T ss_dssp --BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEEE
T ss_pred cEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEEE
Confidence 55555567778888889999875432 12333332 26788999999999999999999999999997
Q ss_pred EeeCCcccccccchHhHHhhcCCeEEEEE
Q 044947 304 VVPIGTQWLSTVYFEKPARVLGLEYLEYK 332 (404)
Q Consensus 304 I~P~g~~w~~~~~y~~lA~~~gl~Y~~y~ 332 (404)
++.+.. .......++ ..|+..+.|.
T Consensus 91 ~~~~~~---~~~~~~~l~-~~~it~~a~E 115 (136)
T PF05222_consen 91 FLHPAQ---NKELLEALA-KKGITAFALE 115 (136)
T ss_dssp E--GGG---HHHHHHHHH-HCTEEEEEGG
T ss_pred eecccc---CHHHHHHHH-HCCCEEEEhh
Confidence 764431 222333333 3677777664
No 57
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.08 E-value=55 Score=32.61 Aligned_cols=72 Identities=25% Similarity=0.457 Sum_probs=52.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCC
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEEL----GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRP 297 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~p 297 (404)
..-++++|.|....||-+ ..+|.+. +..|.+.... +.++. +..++|||+|..-| +++-..=|.+|
T Consensus 160 ~Gk~vvViGrS~iVGkPl------a~lL~~~~~~~~atVtv~hs~-T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPI------ANMMTQKGPGANATVTIVHTR-SKNLA---RHCQRADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred CCCEEEEECCCCcccHHH------HHHHHhcccCCCCEEEEecCC-CcCHH---HHHhhCCEEEEecCCcCccCHHHcCC
Confidence 345899999999876654 4445555 6778776432 44444 45799999997655 67888889999
Q ss_pred CcEEEEE
Q 044947 298 GSVLMQV 304 (404)
Q Consensus 298 gs~vIEI 304 (404)
|++||-+
T Consensus 230 gavVIDv 236 (297)
T PRK14168 230 GATVIDV 236 (297)
T ss_pred CCEEEec
Confidence 9999986
No 58
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.79 E-value=48 Score=33.04 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCC
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEEL----GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPG 298 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pg 298 (404)
.-++++|.|....||-+ ..+|.+. +..|.+... .+-++. +..++|||+|+.-| +++-..=|.+||
T Consensus 157 Gk~vvViGrS~iVGkPl------a~lL~~~~~~~~aTVtvchs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~g 226 (297)
T PRK14167 157 GADVVVVGRSDIVGKPM------ANLLIQKADGGNATVTVCHS-RTDDLA---AKTRRADIVVAAAGVPELIDGSMLSEG 226 (297)
T ss_pred CCEEEEECCCcccHHHH------HHHHhcCccCCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCC
Confidence 44899999998876654 3445544 677877542 244443 46899999998766 678888889999
Q ss_pred cEEEEE
Q 044947 299 SVLMQV 304 (404)
Q Consensus 299 s~vIEI 304 (404)
++||-+
T Consensus 227 aiVIDv 232 (297)
T PRK14167 227 ATVIDV 232 (297)
T ss_pred CEEEEc
Confidence 999986
No 59
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=52.75 E-value=95 Score=30.28 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH--hhCCeEEEechhhh----hhhhccCC-Cc-EEEEEeeCCccccc
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRFI--HSCHAMVGVHGAGL----THSLFLRP-GS-VLMQVVPIGTQWLS 313 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlVGvHGAgL----tn~lF~~p-gs-~vIEI~P~g~~w~~ 313 (404)
...++++.|++.|+++.+..........++++.. ...|+||.+=|-|- .|.++-.+ +. .-+=|+|.|..
T Consensus 15 ~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTg--- 91 (293)
T TIGR03702 15 DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTA--- 91 (293)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCch---
Confidence 5567888899999887655433235566666543 45689999999995 45554221 22 34788999821
Q ss_pred ccchHhHHhhcCCe
Q 044947 314 TVYFEKPARVLGLE 327 (404)
Q Consensus 314 ~~~y~~lA~~~gl~ 327 (404)
..+|+.+|+.
T Consensus 92 ----NdfAr~l~ip 101 (293)
T TIGR03702 92 ----NDFATAAGIP 101 (293)
T ss_pred ----hHHHHhcCCC
Confidence 2455555553
No 60
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.06 E-value=58 Score=32.25 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=52.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHH--cCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCc
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEE--LGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGS 299 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~--~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs 299 (404)
..-++++|.|....||-+ ..+|.+ .+..|.+.... +.++. ...++|||+|..-| +++-..=|.+||+
T Consensus 157 ~Gk~vvViGrS~~VGkPl------a~lL~~~~~~atVtvchs~-T~~l~---~~~k~ADIvV~AvGkp~~i~~~~ik~Ga 226 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPI------GLLLTRRSENATVTLCHTG-TRDLA---AHTRRADIIVAAAGVAHLVTADMVKPGA 226 (284)
T ss_pred CCCEEEEECCCCcchHHH------HHHHhhccCCCEEEEeCCC-CCCHH---HHHHhCCEEEEecCCcCccCHHHcCCCC
Confidence 345899999999876654 344555 58888877533 44444 45789999998777 4566667889999
Q ss_pred EEEEE
Q 044947 300 VLMQV 304 (404)
Q Consensus 300 ~vIEI 304 (404)
+||-+
T Consensus 227 vVIDv 231 (284)
T PRK14193 227 AVLDV 231 (284)
T ss_pred EEEEc
Confidence 99986
No 61
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=51.37 E-value=57 Score=32.19 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=56.2
Q ss_pred CEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCC------------CCHHHHHHHHhhCCeEEEechhhhh-h
Q 044947 225 PKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEES------------TSLADSFRFIHSCHAMVGVHGAGLT-H 291 (404)
Q Consensus 225 prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~------------~~~~eq~~~~~~advlVGvHGAgLt-n 291 (404)
-++++|.-... + ..++..|+..|.+|.+.+.... ..+.+-.+.+.++|++|..-++.+. .
T Consensus 153 ~kvlViG~G~i-G------~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 153 SNVLVLGFGRT-G------MTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTK 225 (296)
T ss_pred CEEEEECCcHH-H------HHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhH
Confidence 36666665332 1 1355666667777766543210 1233344567899999976555533 3
Q ss_pred hh--ccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEEEE
Q 044947 292 SL--FLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYLEY 331 (404)
Q Consensus 292 ~l--F~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~~y 331 (404)
.+ .|+||+++|.+.-.. ....| ..|+..|++...+
T Consensus 226 ~~l~~~~~g~vIIDla~~p----ggtd~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 226 EVLSKMPPEALIIDLASKP----GGTDF-EYAEKRGIKALLA 262 (296)
T ss_pred HHHHcCCCCcEEEEEccCC----CCcCe-eehhhCCeEEEEE
Confidence 33 389999999986221 12334 5677888887754
No 62
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.81 E-value=53 Score=32.55 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=50.1
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHH----cCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCC
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEE----LGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPG 298 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~----~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pg 298 (404)
.-++++|.|....||- +..+|.+ .|..|.+.... +. .-.+.+++|||+|+.-|.. +--.=|.+||
T Consensus 157 Gk~vvViGrS~iVG~P------la~lL~~~~~~~~AtVt~~hs~-t~---~l~~~~~~ADIVI~AvG~p~li~~~~vk~G 226 (286)
T PRK14184 157 GKKAVVVGRSNIVGKP------LALMLGAPGKFANATVTVCHSR-TP---DLAEECREADFLFVAIGRPRFVTADMVKPG 226 (286)
T ss_pred CCEEEEECCCccchHH------HHHHHhCCcccCCCEEEEEeCC-ch---hHHHHHHhCCEEEEecCCCCcCCHHHcCCC
Confidence 4489999999876665 4445666 67888876532 22 3345689999999988753 3333466999
Q ss_pred cEEEEEe
Q 044947 299 SVLMQVV 305 (404)
Q Consensus 299 s~vIEI~ 305 (404)
++||-+-
T Consensus 227 avVIDVG 233 (286)
T PRK14184 227 AVVVDVG 233 (286)
T ss_pred CEEEEee
Confidence 9999863
No 63
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.68 E-value=65 Score=32.05 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHc----CCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCC
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEEL----GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPG 298 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pg 298 (404)
.-++++|.|....||-+ ..+|.+. +..|.+.... +.++.+ ..++|||+|..-| +++-..=|.+||
T Consensus 157 GK~vvViGrS~iVGkPl------a~lL~~~~~~~~aTVtvchs~-T~nl~~---~~~~ADIvIsAvGkp~~i~~~~vk~g 226 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPM------AQLMMQKAYPGDCTVTVCHSR-SKNLKK---ECLEADIIIAALGQPEFVKADMVKEG 226 (293)
T ss_pred CCEEEEECCCccchHHH------HHHHHcCCCCCCCEEEEecCC-CCCHHH---HHhhCCEEEEccCCcCccCHHHcCCC
Confidence 34899999998876653 4456555 5778776432 455554 5679999998776 567777789999
Q ss_pred cEEEEE
Q 044947 299 SVLMQV 304 (404)
Q Consensus 299 s~vIEI 304 (404)
++||-+
T Consensus 227 avVIDv 232 (293)
T PRK14185 227 AVVIDV 232 (293)
T ss_pred CEEEEe
Confidence 999986
No 64
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=47.72 E-value=41 Score=33.31 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=39.3
Q ss_pred HHHHHHcCCeEEEecCCC-CCCHHHHHHHHh--hCCeEEEechhhhhhhhccCCCcEEEEEeeC
Q 044947 247 KKAAEELGFDVTIFEPEE-STSLADSFRFIH--SCHAMVGVHGAGLTHSLFLRPGSVLMQVVPI 307 (404)
Q Consensus 247 ~~~l~~~gf~v~~~~~~~-~~~~~eq~~~~~--~advlVGvHGAgLtn~lF~~pgs~vIEI~P~ 307 (404)
.+.|++.|++|+....++ ..++.+-+++.+ .||++|++|--+.++ +.+.=+|++-+
T Consensus 92 ~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~~ 150 (287)
T PRK10319 92 RSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFAL 150 (287)
T ss_pred HHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEEe
Confidence 445556699999876543 478999998887 899999999655332 33444666543
No 65
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=47.09 E-value=98 Score=30.32 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=55.2
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCe--EEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhh---------hhc
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFD--VTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTH---------SLF 294 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~--v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn---------~lF 294 (404)
++++++|+.. .....+++.+.+.+.+.. +...+. .+..+.-+.+..+|+||-.--.||.. .-+
T Consensus 152 ~V~I~~R~~~---~~~~a~~l~~~l~~~~~~~~~~~~d~---~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~ 225 (289)
T PRK12548 152 EITIFNIKDD---FYERAEQTAEKIKQEVPECIVNVYDL---NDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSV 225 (289)
T ss_pred EEEEEeCCch---HHHHHHHHHHHHhhcCCCceeEEech---hhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHh
Confidence 4778887641 011234555555544322 222222 12222234567889999877777643 225
Q ss_pred cCCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 295 LRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 295 ~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
++++..|++++-. . ..+.+-..|+..|.+..
T Consensus 226 l~~~~~v~D~vY~---P-~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 226 FRKDLVVADTVYN---P-KKTKLLEDAEAAGCKTV 256 (289)
T ss_pred cCCCCEEEEecCC---C-CCCHHHHHHHHCCCeee
Confidence 7788899998722 1 24778899999998654
No 66
>PRK13054 lipid kinase; Reviewed
Probab=44.86 E-value=1.6e+02 Score=28.83 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH--hhCCeEEEechhhhhh----hhccCC-C
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI--HSCHAMVGVHGAGLTH----SLFLRP-G 298 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlVGvHGAgLtn----~lF~~p-g 298 (404)
++++|--.++ +.-....++++.|++.|+++.+......-...++++.. .+.|+||.+=|=|--| .+.-.+ +
T Consensus 5 ~~~~i~N~~~--~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~ 82 (300)
T PRK13054 5 KSLLILNGKS--AGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQLEGD 82 (300)
T ss_pred eEEEEECCCc--cchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhccC
Confidence 4444443333 33345667888899999887654433234566666543 4679999999988544 443212 2
Q ss_pred -cEEEEEeeCC
Q 044947 299 -SVLMQVVPIG 308 (404)
Q Consensus 299 -s~vIEI~P~g 308 (404)
-.-+=|+|.|
T Consensus 83 ~~~~lgiiP~G 93 (300)
T PRK13054 83 ARPALGILPLG 93 (300)
T ss_pred CCCcEEEEeCC
Confidence 2458899998
No 67
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=44.53 E-value=1.3e+02 Score=30.96 Aligned_cols=97 Identities=20% Similarity=0.127 Sum_probs=62.4
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe-c--hhhhhhhhccCCCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV-H--GAGLTHSLFLRPGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv-H--GAgLtn~lF~~pgs~ 300 (404)
+..|-+|.-. ...-|.+|+.+.|++.|++|...-+. ..+++|- +-+.+|.+-|.+ + |..++..|=-+=|.-
T Consensus 158 ~~~VNiig~~----~~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~eei-~~~~~A~lniv~~~~~~~~~a~~L~~~fGip 231 (410)
T cd01968 158 PYDINLIGEF----NVAGELWGVKPLLEKLGIRVLASITG-DSRVDEI-RRAHRAKLNVVQCSKSMIYLARKMEEKYGIP 231 (410)
T ss_pred CCcEEEECCC----CCcccHHHHHHHHHHcCCeEEEEeCC-CCCHHHH-HhhhhCcEEEEEchhHHHHHHHHHHHHhCCC
Confidence 4456666521 23347789999999999999864343 4566554 556677766644 3 323333332234666
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.+...|+|++. ...+++.+|+.+|..
T Consensus 232 ~~~~~p~G~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 232 YIEVSFYGIRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred eEecCcCcHHH-HHHHHHHHHHHhCCc
Confidence 67777888653 457899999999974
No 68
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=44.35 E-value=29 Score=35.99 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=64.7
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH-hhCCeEEEechhhhhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI-HSCHAMVGVHGAGLTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~-~~advlVGvHGAgLtn~lF~~pgs~vI 302 (404)
++++.++..-. -.+.+|+.+.|++.|.+++.+-+ ..+++|-.++= +.+-++++..+...+..|= ..|.-.+
T Consensus 159 ~~~vniiG~~~-----~~d~~ei~~lL~~~Gl~~~~~l~--~~~~~el~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~ 230 (416)
T cd01980 159 EPSLALLGEMF-----PADPVAIGSVLERMGLAAVPVVP--TREWRELYAAGDAAAVAALHPFYTATIRELE-EAGRPIV 230 (416)
T ss_pred CCeEEEEccCC-----CCCHHHHHHHHHHcCCceeeEeC--CCCHHHHhhcccCcEEEEeChhHHHHHHHHH-HcCCcee
Confidence 46888885322 23667999999999999986434 35666654444 3344555566666666664 4477677
Q ss_pred EEeeCCcccccccchHhHHhhcCCe
Q 044947 303 QVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 303 EI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
...|.|++. ...++..+|...|..
T Consensus 231 ~~~piG~~~-td~~l~~la~~~g~~ 254 (416)
T cd01980 231 SGAPVGADG-TAAWLEAVGEALGLD 254 (416)
T ss_pred cCCCcCchH-HHHHHHHHHHHhCcC
Confidence 778999663 467999999999974
No 69
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=44.10 E-value=60 Score=25.52 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCeEEEecC---CCCCCHHHHHHHHhhCCeEEEechhhhh
Q 044947 245 EVKKAAEELGFDVTIFEP---EESTSLADSFRFIHSCHAMVGVHGAGLT 290 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~---~~~~~~~eq~~~~~~advlVGvHGAgLt 290 (404)
.+.+.+.+.|++.+.++. ....+..--++.+.+||++||.=|.--.
T Consensus 17 ~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG 65 (83)
T PF13271_consen 17 ALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYG 65 (83)
T ss_pred HHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccC
Confidence 355667777777665542 2246677778899999999999886443
No 70
>PRK13057 putative lipid kinase; Reviewed
Probab=43.73 E-value=1.1e+02 Score=29.70 Aligned_cols=66 Identities=17% Similarity=0.355 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH-HhhCCeEEEechhhhhhhh---ccCCCcEEEEEeeCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRF-IHSCHAMVGVHGAGLTHSL---FLRPGSVLMQVVPIG 308 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~-~~~advlVGvHGAgLtn~l---F~~pgs~vIEI~P~g 308 (404)
..+++.+.|++.|+++.....+......+.++. -...|+||.+=|=|--|.+ .+..+ .-+=++|.|
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~~~-~~lgiiP~G 83 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVETG-LPLGILPLG 83 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhcCC-CcEEEECCC
Confidence 467899999999999776654323334444433 4567999999998865544 23332 347888998
No 71
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=43.12 E-value=1.1e+02 Score=26.60 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=40.0
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEe
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGV 284 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGv 284 (404)
++|++++..=.+. ..-+...-+..+|+..||+|+.+.. ..+.++.++...+.++ +|++
T Consensus 2 ~~~~vl~~~~~gD--~H~lG~~iv~~~lr~~G~eVi~LG~--~vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 2 KKKTVVLGVIGAD--CHAVGNKILDRALTEAGFEVINLGV--MTSQEEFIDAAIETDADAILV 60 (137)
T ss_pred CCCEEEEEeCCCC--hhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEE
Confidence 3566666655444 4555555566788899999999765 5999999999877554 3443
No 72
>PLN02204 diacylglycerol kinase
Probab=43.00 E-value=1.2e+02 Score=33.18 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=53.3
Q ss_pred cHHHHHHHHHhhcCCCCCCCCCCCCCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH---
Q 044947 198 TLVDFQSFLANAYNENTNTSSSFHHTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRF--- 274 (404)
Q Consensus 198 ~~~~F~~fl~~~~~~~~~~~~~~~~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~--- 274 (404)
....+.+.|...+.... . ..+.-++|+.-....+|...+.++|...+++.|+++.++..+......+.++.
T Consensus 140 ~~~~w~~~l~~~l~~~~-----~-r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~ 213 (601)
T PLN02204 140 TCQSWVDRLNASLNKEV-----G-RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISN 213 (601)
T ss_pred HHHHHHHHHHHHHhhcc-----C-CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhh
Confidence 44455555555553211 1 22334566666555456666777899999999887655443322233333322
Q ss_pred --HhhCCeEEEechhhhhhhh
Q 044947 275 --IHSCHAMVGVHGAGLTHSL 293 (404)
Q Consensus 275 --~~~advlVGvHGAgLtn~l 293 (404)
....|.||++=|-|+-|-+
T Consensus 214 ~~l~~~D~VVaVGGDGt~nEV 234 (601)
T PLN02204 214 KELKSYDGVIAVGGDGFFNEI 234 (601)
T ss_pred hhccCCCEEEEEcCccHHHHH
Confidence 4567999999999976644
No 73
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=42.42 E-value=72 Score=28.61 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHH---hhCCeEEEechhhhhhhhccCC
Q 044947 242 NLREVKKAAEELGFDVTIFE--PEESTSLADSFRFI---HSCHAMVGVHGAGLTHSLFLRP 297 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~---~~advlVGvHGAgLtn~lF~~p 297 (404)
|-.-+.+.|++.|+++.... ++....+.+.++.. +.+|++|-.=|+|.+--=+.++
T Consensus 23 n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred cHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 55667888999999987543 34335566777654 4699999999998876555554
No 74
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=42.35 E-value=90 Score=33.42 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe-chhhhhhhhccCC--C
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV-HGAGLTHSLFLRP--G 298 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv-HGAgLtn~lF~~p--g 298 (404)
..+++|=||.-..-..+.--|..||.+.|++.|.+|..+-+. +.++ ++++-+.+|++=|.+ +-.|+.-+=+|.. |
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~-g~sl-~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fg 238 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPE-GGSV-EDLKNLPKAWFNIVPYREVGLMTAKYLEKEFG 238 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECC-CCCH-HHHHhcccCcEEEEechhhhHHHHHHHHHHhC
Confidence 456677788655322255568889999999999999865554 3555 455668888887766 3356555556655 5
Q ss_pred cEEEEEeeCCcccccccchHhHHhhcCCe
Q 044947 299 SVLMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 299 s~vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.-.+...|.|+.- ...+-..+|+.+|..
T Consensus 239 iP~i~~~PiGi~~-T~~fLr~la~~lg~~ 266 (513)
T CHL00076 239 MPYISTTPMGIVD-TAECIRQIQKILNKL 266 (513)
T ss_pred CCeEeeccCCHHH-HHHHHHHHHHHhCCC
Confidence 6567778999542 456788999999964
No 75
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=41.20 E-value=33 Score=34.36 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG 288 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg 288 (404)
.|++++|+..||+++.+|.-.----+-.+.-+..+-+++-..|+|
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~G 177 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAG 177 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCC
Confidence 488999999999999998431111122233344444556666665
No 76
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=40.95 E-value=2.1e+02 Score=27.63 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=51.2
Q ss_pred EEEEEecCCCCC-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH--hhCCeEEEechhhhhh----hhccCCC
Q 044947 226 KLVLVNRNARVG-RTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI--HSCHAMVGVHGAGLTH----SLFLRPG 298 (404)
Q Consensus 226 rv~~i~R~~~~~-R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlVGvHGAgLtn----~lF~~pg 298 (404)
|+.+|....+.+ +.--..+++.+.+++.|+++.+..........++++.. ..+|++|.+=|=|--| .+.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~ 82 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQLDD 82 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcCCC
Confidence 555665553321 22223567888899999987765544233555555433 3478999999988655 4544333
Q ss_pred cEEEEEeeCC
Q 044947 299 SVLMQVVPIG 308 (404)
Q Consensus 299 s~vIEI~P~g 308 (404)
...|=++|.|
T Consensus 83 ~~~lgiiP~G 92 (293)
T TIGR00147 83 IPALGILPLG 92 (293)
T ss_pred CCcEEEEcCc
Confidence 4467888998
No 77
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.77 E-value=1e+02 Score=27.05 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEec
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGVH 285 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGvH 285 (404)
.-+..+|++.||+|+..-. ..+.++.++.....|+ +||+-
T Consensus 19 ~iv~~~l~~~GfeVi~LG~--~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGV--LSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEe
Confidence 3456788999999998765 5899999999988666 56653
No 78
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=40.50 E-value=45 Score=29.09 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHH-hhCCeEEEechhhhhhh
Q 044947 241 LNLREVKKAAEELGFDVTIFE--PEESTSLADSFRFI-HSCHAMVGVHGAGLTHS 292 (404)
Q Consensus 241 ~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~-~~advlVGvHGAgLtn~ 292 (404)
.|..-|.+.|++.|+++.... ++....+.++++.. .++|+||..=|+|.+.-
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~~ 81 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGPR 81 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCC
Confidence 456678889999999987544 33234567776644 67999999988887543
No 79
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=40.08 E-value=1.3e+02 Score=29.57 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCCCcccc--CHHHHHHHHHHcCCeEEEe-cC-------------------CCCCCHHHHHHHHhhCCeE
Q 044947 224 KPKLVLVNRNARVGRTIL--NLREVKKAAEELGFDVTIF-EP-------------------EESTSLADSFRFIHSCHAM 281 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~-~~-------------------~~~~~~~eq~~~~~~advl 281 (404)
++.++++.-.....|++- +-.||++.+.+.|+.++.. .. ....++.|-+++++.||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 445555543332336665 4568888887778887664 11 1147999999999999999
Q ss_pred EEechhhhhhhhccCCCcEEEEEeeCC
Q 044947 282 VGVHGAGLTHSLFLRPGSVLMQVVPIG 308 (404)
Q Consensus 282 VGvHGAgLtn~lF~~pgs~vIEI~P~g 308 (404)
||.=. |..|+--+ =|+-+|-|+...
T Consensus 258 I~nDS-Gp~HlA~A-~g~p~valfGpt 282 (322)
T PRK10964 258 VSVDT-GLSHLTAA-LDRPNITLYGPT 282 (322)
T ss_pred EecCC-cHHHHHHH-hCCCEEEEECCC
Confidence 99754 34443322 135567777544
No 80
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=39.09 E-value=91 Score=32.29 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=68.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCC----------------CCCCHHHHHHHHhhCCeEEEech
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPE----------------ESTSLADSFRFIHSCHAMVGVHG 286 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~----------------~~~~~~eq~~~~~~advlVGvHG 286 (404)
.+.+|-+|.-... .--|.+|+.+.|++.|.++..+-.- ..-+--|+++-+.+|.+-|.++-
T Consensus 154 ~~~~VNlig~~~~---~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~ 230 (428)
T cd01965 154 KNGKVNLLPGFPL---TPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGE 230 (428)
T ss_pred CCCeEEEECCCCC---CccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEECh
Confidence 4556777753322 1128899999999999999875321 01234466777889998888877
Q ss_pred -hhhhhhhccCC--CcEEEEEe-eCCcccccccchHhHHhhcCCe
Q 044947 287 -AGLTHSLFLRP--GSVLMQVV-PIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 287 -AgLtn~lF~~p--gs~vIEI~-P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
+|..-+-+|.. |.-.+..- |+|++- ...+++.+|+..|..
T Consensus 231 ~~~~~~a~~L~e~~GiP~~~~~~p~G~~~-t~~~l~~l~~~~g~~ 274 (428)
T cd01965 231 YSGRKAAKALEEKFGVPYILFPTPIGLKA-TDEFLRALSKLSGKP 274 (428)
T ss_pred hhhHHHHHHHHHHHCCCeeecCCCcChHH-HHHHHHHHHHHHCCC
Confidence 77666666654 56667665 888542 356888999988865
No 81
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.48 E-value=61 Score=31.93 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=48.0
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechh-hhhhhhccCCCcEEEEE
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGA-GLTHSLFLRPGSVLMQV 304 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGA-gLtn~lF~~pgs~vIEI 304 (404)
+++++.|.+..+|- +..+|.+.|..|.+.... ..++. +.+.+||++|..-|- ++--.=+++||+.||.+
T Consensus 161 ~vvViG~gg~vGkp------ia~~L~~~gatVtv~~~~-t~~L~---~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDv 230 (283)
T PRK14192 161 HAVVVGRSAILGKP------MAMMLLNANATVTICHSR-TQNLP---ELVKQADIIVGAVGKPELIKKDWIKQGAVVVDA 230 (283)
T ss_pred EEEEECCcHHHHHH------HHHHHHhCCCEEEEEeCC-chhHH---HHhccCCEEEEccCCCCcCCHHHcCCCCEEEEE
Confidence 79999998844443 456677788888877642 33343 456899999998862 22223346889999887
Q ss_pred e
Q 044947 305 V 305 (404)
Q Consensus 305 ~ 305 (404)
.
T Consensus 231 g 231 (283)
T PRK14192 231 G 231 (283)
T ss_pred E
Confidence 5
No 82
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=37.95 E-value=74 Score=32.85 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=63.4
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccC--CCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLR--PGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~--pgs~ 300 (404)
+.+|-+|. .. ..--|.+|+.+.|++.|++++..-+. ..+++| ++-+.+|.+-|.+.+ .|+.-+-+|. =|.-
T Consensus 162 ~~~VNliG--~~--~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP 235 (415)
T cd01977 162 DYTINYIG--DY--NIQGDTEVLQKYFERMGIQVLSTFTG-NGTYDD-LRWMHRAKLNVVNCARSAGYIANELKKRYGIP 235 (415)
T ss_pred CCcEEEEc--cC--CCcccHHHHHHHHHHcCCeEEEEECC-CCCHHH-HHhcccCCEEEEEchhHHHHHHHHHHHHhCCC
Confidence 45666664 22 23346788999999999999743333 355555 677888888665543 3433333443 3666
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.+.+.|+|++. ...++..+|+.+|+.
T Consensus 236 ~~~~~~~G~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 236 RLDVDGFGFEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred eEEeccCCHHH-HHHHHHHHHHHhCcc
Confidence 77777888653 357899999999965
No 83
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.40 E-value=1.3e+02 Score=26.77 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEechhhhhhh
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGVHGAGLTHS 292 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGvHGAgLtn~ 292 (404)
.+|||+++..=.-. -.=.-..-+..+++..||+|+..-. ..+-.|-++..-..|+ +||+-+-.-.|.
T Consensus 10 g~rprvlvak~GlD--gHd~gakvia~~l~d~GfeVi~~g~--~~tp~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 10 GARPRVLVAKLGLD--GHDRGAKVIARALADAGFEVINLGL--FQTPEEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred CCCceEEEeccCcc--ccccchHHHHHHHHhCCceEEecCC--cCCHHHHHHHHHhcCCCEEEEEeccchHH
Confidence 36889888653321 0001122456788999999998653 3566666666634443 445544333333
No 84
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.36 E-value=1.4e+02 Score=25.77 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=29.8
Q ss_pred HHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEechhh
Q 044947 246 VKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGVHGAG 288 (404)
Q Consensus 246 v~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGvHGAg 288 (404)
+..+++..||+|+.... ..|.++.++.....++ +||+-+.-
T Consensus 22 v~~~l~~~GfeVi~lg~--~~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 22 IATAYADLGFDVDVGPL--FQTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEcCch
Confidence 55678888999998654 4788888888877666 55554433
No 85
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=35.43 E-value=38 Score=31.72 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=43.9
Q ss_pred CCHHHHHHHHhhCCeEEEechhhhhhhhccCCCcEEEEEeeCCcccccccchHh--HHhhcCCeEEEEE
Q 044947 266 TSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQVVPIGTQWLSTVYFEK--PARVLGLEYLEYK 332 (404)
Q Consensus 266 ~~~~eq~~~~~~advlVGvHGAgLtn~lF~~pgs~vIEI~P~g~~w~~~~~y~~--lA~~~gl~Y~~y~ 332 (404)
-.+++.++.-.++||+|++-=-|=||++|+++ .-+++-= | .-.++.. .|+.+|+.+.-|.
T Consensus 102 ~~i~~~~~~~~d~dvviaP~~gGGTn~L~~r~--~~~~~~y-~----g~SF~~Hl~~Ark~G~~~~~~d 163 (210)
T COG1920 102 EHIERALSAAKDADVVIAPGRGGGTNVLFARK--SAFRPRY-G----GVSFLRHLEEARKRGLVVLTYD 163 (210)
T ss_pred HHHHHHHHhcCCCcEEEecCCCCceEEEEEec--ccccccc-c----CccHHHHHHHHHHcCCEEEEec
Confidence 34667777778899999999999999999999 3344321 1 2334444 6899999998874
No 86
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=34.94 E-value=93 Score=27.27 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechh
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGA 287 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGA 287 (404)
+++.++++++|++|..++.. ..+-.+..+.+.+||+|.=.=|.
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~-~~~~~~~~~~i~~ad~I~~~GG~ 45 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLS-DRNDADILEAIREADAIFLGGGD 45 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCT-SCGHHHHHHHHHHSSEEEE--S-
T ss_pred HHHHHHHHHCCCEEEEEecc-CCChHHHHHHHHhCCEEEECCCC
Confidence 45667777778887776654 34566777777788877655443
No 87
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=34.61 E-value=76 Score=28.29 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=53.6
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHH-HHcCCeEEE-ecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccCC-Cc
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAA-EELGFDVTI-FEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRP-GS 299 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l-~~~gf~v~~-~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~p-gs 299 (404)
..|.+++..++. +.+.+.+++++.| +++--.+++ .++..-++-++-.+.+.+ +-+-+||++|+.|=+. |-
T Consensus 7 EGPelviYtk~P---~~~~~~~dli~~lAk~lrKRIvvR~dps~l~~~e~A~~~I~~----ivP~ea~i~di~Fd~~tGE 79 (145)
T cd02410 7 EGPELVVYTKNP---ELFAEDGDLVKDLAKDLRKRIVIRPDPSVLKPPEEAIKIILE----IVPEEAGITDIYFDDDTGE 79 (145)
T ss_pred eCCeEEEEECCH---HHHhcccHHHHHHHHHHhceEEEcCChhhcCCHHHHHHHHHH----hCCCccCceeeEecCCCcE
Confidence 468889988876 4666656766544 455444433 333333556666666665 5677899999999986 89
Q ss_pred EEEEEeeCC
Q 044947 300 VLMQVVPIG 308 (404)
Q Consensus 300 ~vIEI~P~g 308 (404)
++||.-=+|
T Consensus 80 V~IeaeKPG 88 (145)
T cd02410 80 VIIEAEKPG 88 (145)
T ss_pred EEEEEcCCe
Confidence 999987554
No 88
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.84 E-value=41 Score=26.88 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhcc
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFL 295 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~ 295 (404)
+..+|.++|++.||+|+.++.. .-+..+|.+| +-|-. +|++=+
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~---------~~~~~~daiV-vtG~~-~n~mg~ 51 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENE---------QDLQNVDAIV-VTGQD-TNMMGI 51 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCc---------cccCCcCEEE-EECCC-cccccc
Confidence 4568999999999999988743 1356788877 44433 465544
No 89
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.60 E-value=1e+02 Score=24.89 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHcCCeEEEe--cCCCCCCHHHHHHHHhhCCeEEEe
Q 044947 242 NLREVKKAAEELGFDVTIF--EPEESTSLADSFRFIHSCHAMVGV 284 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~--~~~~~~~~~eq~~~~~~advlVGv 284 (404)
+++++.+.+++.|++.+.. +......-...-..+.+||+||-+
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 5678888999999999887 222112222244578899998754
No 90
>PRK03094 hypothetical protein; Provisional
Probab=33.44 E-value=59 Score=26.05 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHcCCeEEEecC
Q 044947 242 NLREVKKAAEELGFDVTIFEP 262 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~ 262 (404)
++.+|.+.|++.||+|+.++.
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCc
Confidence 466799999999999998764
No 91
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=33.35 E-value=1.6e+02 Score=28.28 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=37.3
Q ss_pred HhhCCeEEEechhhhhhh--------hccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 275 IHSCHAMVGVHGAGLTHS--------LFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 275 ~~~advlVGvHGAgLtn~--------lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
..++|++|..-++|+... -+++++..|+++.-.. ..+.+...|+..|+++.
T Consensus 176 ~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p----~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 176 LHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP----GETPFLAEAKSLGTKTI 234 (270)
T ss_pred ccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC----CCCHHHHHHHHCCCeee
Confidence 357999999999887432 2368889999996322 23468888999999866
No 92
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=33.21 E-value=1.5e+02 Score=27.31 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=46.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhh
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLT 290 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLt 290 (404)
..+++++|.-.... .=-..++..++++++|+++..+......+-.+..+.+.+||+|+=.=|.-..
T Consensus 28 ~~~~i~~iptA~~~--~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGD--RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLR 93 (210)
T ss_pred CCCeEEEEeCCCCC--hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHH
Confidence 57899999876642 1123356788889999988765432134568888999999998866665443
No 93
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.74 E-value=92 Score=32.36 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=63.9
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh---hhhhhccCCCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG---LTHSLFLRPGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg---Ltn~lF~~pgs~ 300 (404)
...|-+|.= . ..--|..|+.+.|++.|.++...-+. ..++ |+++-+.+|.+-|.+...+ ++..|==+=|.-
T Consensus 172 ~~~VNiiG~--~--~~~~d~~el~~lL~~~Gi~v~~~~~~-~~t~-eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP 245 (421)
T cd01976 172 PYDVNIIGD--Y--NIGGDAWASRILLEEMGLRVVAQWSG-DGTL-NEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIP 245 (421)
T ss_pred CCeEEEEec--C--CCCccHHHHHHHHHHcCCeEEEEeCC-CCCH-HHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCc
Confidence 456667752 1 22347789999999999999854333 3455 5556677788766664322 344443344677
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.++..|+|++- ...++..+|+..|..
T Consensus 246 ~~~~~p~Gi~~-t~~~l~~ia~~~g~~ 271 (421)
T cd01976 246 WMEYNFFGPTK-IAESLRKIAAYFDDE 271 (421)
T ss_pred EEecccCCHHH-HHHHHHHHHHHhCch
Confidence 77777999542 457899999998874
No 94
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=32.59 E-value=56 Score=32.51 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=43.1
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhh----hhhhccCCCcEE
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGL----THSLFLRPGSVL 301 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgL----tn~lF~~pgs~v 301 (404)
++.+.+|+.. +.+++++.+++.|++++..+ +. -+.+.+||||+..-.+.- -..=|++||+.|
T Consensus 155 ~v~v~~r~~~------~~~~~~~~~~~~~~~v~~~~-----~~---~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi 220 (313)
T PF02423_consen 155 EVRVYSRSPE------RAEAFAARLRDLGVPVVAVD-----SA---EEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHI 220 (313)
T ss_dssp EEEEE-SSHH------HHHHHHHHHHCCCTCEEEES-----SH---HHHHTTSSEEEE----SSEEESB-GGGS-TT-EE
T ss_pred EEEEEccChh------HHHHHHHhhccccccceecc-----ch---hhhcccCCEEEEccCCCCCCccccHHHcCCCcEE
Confidence 6777776543 45678888877888888764 22 255899999999988876 556689999998
Q ss_pred EEEeeCC
Q 044947 302 MQVVPIG 308 (404)
Q Consensus 302 IEI~P~g 308 (404)
+-|-.+.
T Consensus 221 ~~iGs~~ 227 (313)
T PF02423_consen 221 NAIGSYT 227 (313)
T ss_dssp EE-S-SS
T ss_pred EEecCCC
Confidence 8776544
No 95
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=32.52 E-value=68 Score=27.48 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHH-hhCCeEEEechhhhhh
Q 044947 242 NLREVKKAAEELGFDVTIFE--PEESTSLADSFRFI-HSCHAMVGVHGAGLTH 291 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~-~~advlVGvHGAgLtn 291 (404)
|-.-+.+.+++.|+++.... ++....+.++++.. .++|++|-.=|.|.+-
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~ 72 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGR 72 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCC
Confidence 55567788999999987543 33345677777644 5699999998888764
No 96
>PRK00861 putative lipid kinase; Reviewed
Probab=32.18 E-value=3.1e+02 Score=26.63 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=45.7
Q ss_pred EEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH--hhCCeEEEechhhhhhhhc---cCCCcEEE
Q 044947 228 VLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI--HSCHAMVGVHGAGLTHSLF---LRPGSVLM 302 (404)
Q Consensus 228 ~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlVGvHGAgLtn~lF---~~pgs~vI 302 (404)
+|++-....++.-...+++.+.+++ +.++.+..........++++.. ...|+||.+=|=|--|.+= +.. ..-+
T Consensus 7 iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~~-~~~l 84 (300)
T PRK00861 7 LIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIGT-DIPL 84 (300)
T ss_pred EEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhcC-CCcE
Confidence 3444433333433345677777776 3454443333245666666554 4568999999988554332 222 2458
Q ss_pred EEeeCC
Q 044947 303 QVVPIG 308 (404)
Q Consensus 303 EI~P~g 308 (404)
=++|.|
T Consensus 85 gviP~G 90 (300)
T PRK00861 85 GIIPRG 90 (300)
T ss_pred EEEcCC
Confidence 889999
No 97
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=31.52 E-value=82 Score=28.47 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHh-hCCeEEEechhh---hhhhhccC
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIH-SCHAMVGVHGAG---LTHSLFLR 296 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~-~advlVGvHGAg---Ltn~lF~~ 296 (404)
+++++..++.|++|+.+.......+.+-...+. ..-|++|.-|+| |.|.|.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578889999999999988655677888777775 566789999988 77877754
No 98
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=30.97 E-value=79 Score=26.98 Aligned_cols=51 Identities=20% Similarity=0.410 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHH-HHhhCCeEEEechhhhhhh
Q 044947 242 NLREVKKAAEELGFDVTIFE--PEESTSLADSFR-FIHSCHAMVGVHGAGLTHS 292 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~-~~~~advlVGvHGAgLtn~ 292 (404)
|..-+.+.|++.|+++.... ++....+.+.++ +...+|+||-.=|+|.+.-
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~ 72 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPD 72 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCC
Confidence 55678889999999875332 332355666664 3467999999988886544
No 99
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=30.67 E-value=94 Score=32.50 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=63.9
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechh-h--hhhhhccCCCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGA-G--LTHSLFLRPGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGA-g--Ltn~lF~~pgs~ 300 (404)
+.+|-+|.= . ...-|.+|+.+.|++.|++++..-+. ..++ |+++-+.+|..-|.+.+. + ++..|==+=|.-
T Consensus 191 ~~~VNiig~--~--~~~~d~~el~~lL~~~Gl~v~~~~~~-~~t~-eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP 264 (443)
T TIGR01862 191 EYDVNIIGE--Y--NIGGDAWVMRIYLEEMGIQVVATFTG-DGTY-DEIRLMHKAKLNLVHCARSANYIANELEERYGIP 264 (443)
T ss_pred CCeEEEEcc--C--cCcccHHHHHHHHHHcCCeEEEEECC-CCCH-HHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCC
Confidence 456777752 1 22457889999999999999754333 3444 556678888877665542 2 344443334676
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.+.+.|+|++. ...++..+|+..|+.
T Consensus 265 ~~~~~p~G~~~-t~~~l~~la~~~gi~ 290 (443)
T TIGR01862 265 WMKIDFFGFTY-TAESLRAIAAFFGIE 290 (443)
T ss_pred eEecccCCHHH-HHHHHHHHHHHhCCc
Confidence 77777888653 357889999988853
No 100
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=30.30 E-value=1.7e+02 Score=26.35 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhh----hhccCCCcE
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEE-LGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTH----SLFLRPGSV 300 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~-~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn----~lF~~pgs~ 300 (404)
++++++|+.. ..+++.+.+++ .+.++...+ ..+..+..+.++.+|++|..-.+|+.+ ..+.+++.+
T Consensus 54 ~V~l~~R~~~------~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~v 124 (194)
T cd01078 54 RVVLVGRDLE------RAQKAADSLRARFGEGVGAVE---TSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAV 124 (194)
T ss_pred EEEEEcCCHH------HHHHHHHHHHhhcCCcEEEee---CCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeE
Confidence 6777877533 23344444442 355655544 356666677889999999988888842 112234566
Q ss_pred EEEE
Q 044947 301 LMQV 304 (404)
Q Consensus 301 vIEI 304 (404)
++.+
T Consensus 125 v~D~ 128 (194)
T cd01078 125 AADV 128 (194)
T ss_pred EEEc
Confidence 6664
No 101
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=30.23 E-value=91 Score=32.81 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=64.5
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEec---hhhhhhhhccCCCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVH---GAGLTHSLFLRPGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvH---GAgLtn~lF~~pgs~ 300 (404)
+..|-+|. .. -.--|.+|+.+.|++.|++++..-+. ..++ ++++.+.+|+.-|.+. |..++..|=-+=|.-
T Consensus 199 ~~~VNiiG--~~--~~~gd~~el~~lL~~~Gl~v~~~~~g-~~s~-~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP 272 (457)
T TIGR01284 199 EYDVNLIG--EY--NIQGDLWVLKKYFERMGIQVLSTFTG-NGCY-DELRWMHRAKLNVVRCARSANYIANELEERYGIP 272 (457)
T ss_pred CCeEEEEc--cC--CchhhHHHHHHHHHHcCCeEEEEECC-CCCH-HHHHhccccCEEEEEChHHHHHHHHHHHHHhCCC
Confidence 44666774 22 22246678999999999999744343 3445 5556678877755433 334566554455777
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.+.+-|+|++. ...++..+|+..|+.
T Consensus 273 ~~~~~~~G~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 273 RLDIDFFGFEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred eEecccCCHHH-HHHHHHHHHHHhCCc
Confidence 88887888653 356899999999975
No 102
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=30.16 E-value=2.3e+02 Score=27.60 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCCEEEEEecCCCCCcccc--CHHHHHHHHHHcCCeEEEe-cCC-------------------CCCCHHHHHHHHhhCCe
Q 044947 223 TKPKLVLVNRNARVGRTIL--NLREVKKAAEELGFDVTIF-EPE-------------------ESTSLADSFRFIHSCHA 280 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~-~~~-------------------~~~~~~eq~~~~~~adv 280 (404)
.+|.+++..-.....|++- +-.+|++.+.+.|+.++.+ ... ...++.|-+++++.||+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCE
Confidence 3555555544333346664 5558888887668877654 210 14689999999999999
Q ss_pred EEEechhhhhhhhccCCCcEEEEEee
Q 044947 281 MVGVHGAGLTHSLFLRPGSVLMQVVP 306 (404)
Q Consensus 281 lVGvHGAgLtn~lF~~pgs~vIEI~P 306 (404)
+||.=. |..|+-=+- |+-+|-|+.
T Consensus 258 ~I~~DS-gp~HlAaa~-g~P~i~lfg 281 (319)
T TIGR02193 258 VVGVDT-GLTHLAAAL-DKPTVTLYG 281 (319)
T ss_pred EEeCCC-hHHHHHHHc-CCCEEEEEC
Confidence 999753 444443322 556666663
No 103
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=30.07 E-value=2.1e+02 Score=29.27 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=37.9
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCC----CCCHHHHHHHH--hhCCeEEEech
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEE----STSLADSFRFI--HSCHAMVGVHG 286 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~----~~~~~eq~~~~--~~advlVGvHG 286 (404)
|++++..++. .+---.+++.+.|++.|.++.+++... ..++.+.++.+ .++|+|||+=|
T Consensus 24 ~~livt~~~~--~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG 88 (386)
T cd08191 24 RALIVTDERM--AGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG 88 (386)
T ss_pred eEEEEECcch--hhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6677775443 332335678889999999887765321 12233444444 47899999988
No 104
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=29.74 E-value=1.2e+02 Score=27.28 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe
Q 044947 243 LREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV 284 (404)
Q Consensus 243 e~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv 284 (404)
..++.+.+++.|++|.++. +.|+..++-.-..-+.+|||
T Consensus 75 Ig~l~~lae~~g~~v~i~~---Ggt~ar~~ik~~~p~~iigV 113 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIAT---GGTLARKIIKEYRPKAIIGV 113 (158)
T ss_pred hhHHHHHHHHcCCEEEEEc---ChHHHHHHHHHhCCCEEEEE
Confidence 4579999999999988876 45666655555555555554
No 105
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=29.27 E-value=1.2e+02 Score=30.80 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCeEEEec---CCCC-CCHHHHHHHHh-----hCCeEEEech
Q 044947 244 REVKKAAEELGFDVTIFE---PEES-TSLADSFRFIH-----SCHAMVGVHG 286 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~---~~~~-~~~~eq~~~~~-----~advlVGvHG 286 (404)
+.+++.|++.|.++.+++ ++.+ -.+.+-+++++ ++|+|||+=|
T Consensus 39 ~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG 90 (347)
T cd08184 39 KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG 90 (347)
T ss_pred hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC
Confidence 678899999888876653 2212 22445556665 6899999988
No 106
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=29.26 E-value=1.1e+02 Score=29.49 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=45.7
Q ss_pred CCEEEEEecCCCCCccccC-------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccC
Q 044947 224 KPKLVLVNRNARVGRTILN-------LREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLR 296 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~N-------e~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~ 296 (404)
-|+++|.+=.++ +++ ..+++..|++.||+|+... ..+..||..+-.+ +|+-| ..|..
T Consensus 6 ~~~lIFtDlD~T----Ll~~~ye~~pA~pv~~el~d~G~~Vi~~S---SKT~aE~~~l~~~----l~v~~-----~p~ia 69 (274)
T COG3769 6 MPLLIFTDLDGT----LLPHSYEWQPAAPVLLELKDAGVPVILCS---SKTRAEMLYLQKS----LGVQG-----LPLIA 69 (274)
T ss_pred cceEEEEcccCc----ccCCCCCCCccchHHHHHHHcCCeEEEec---cchHHHHHHHHHh----cCCCC-----Cceee
Confidence 455666555443 233 3478889999999999876 6899999988876 44444 55666
Q ss_pred CCcEEEEEeeCC
Q 044947 297 PGSVLMQVVPIG 308 (404)
Q Consensus 297 pgs~vIEI~P~g 308 (404)
.+..+|.+ |-|
T Consensus 70 EnG~aI~~-p~~ 80 (274)
T COG3769 70 ENGAAIYL-PKG 80 (274)
T ss_pred cCCceEEe-ccc
Confidence 66556654 444
No 107
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=29.05 E-value=1.2e+02 Score=31.28 Aligned_cols=61 Identities=21% Similarity=0.383 Sum_probs=39.3
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEec---CCCC-CCHHHHHHHH--hhCCeEEEechhh
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFE---PEES-TSLADSFRFI--HSCHAMVGVHGAG 288 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~---~~~~-~~~~eq~~~~--~~advlVGvHGAg 288 (404)
|++++.-+.. ++.--.+++.+.|++.|.++.+++ ++.+ -.+.+-++++ .++|+|||+=|-.
T Consensus 25 ~vlivt~~~~--~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 91 (414)
T cd08190 25 RVCLVTDPNL--AQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGS 91 (414)
T ss_pred eEEEEECcch--hhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 6677765544 444346889999999998887764 2211 2233444555 3689999997753
No 108
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=28.94 E-value=59 Score=29.51 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccCCC-cEEEEEeeCC
Q 044947 245 EVKKAAEEL-GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPG-SVLMQVVPIG 308 (404)
Q Consensus 245 ev~~~l~~~-gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~pg-s~vIEI~P~g 308 (404)
++.+.+++. .-+.+.......+++.+....+..-+=+||+| +|.||. ..++||+|..
T Consensus 95 ~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~ 153 (180)
T PF02737_consen 95 ELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGP 153 (180)
T ss_dssp HHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-T
T ss_pred HHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCC
Confidence 455556555 34444444444789999998888888899999 456776 7899999987
No 109
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.65 E-value=2.1e+02 Score=27.65 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=39.7
Q ss_pred HHHhhCCeEEEechhhhhh--------hhccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 273 RFIHSCHAMVGVHGAGLTH--------SLFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 273 ~~~~~advlVGvHGAgLtn--------~lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
..+..+|++|..-.+|+.. .-++++++.|++++-.. ..+.|-..|+..|++..
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP----LPTPFLAWAKAQGARTI 241 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC----CCCHHHHHHHHCcCeec
Confidence 4557899999999999843 13467889999997322 24678889999998654
No 110
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.73 E-value=1.9e+02 Score=29.54 Aligned_cols=59 Identities=19% Similarity=0.403 Sum_probs=38.2
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecC---CCC-CCHHHHHHHH--hhCCeEEEech
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEP---EES-TSLADSFRFI--HSCHAMVGVHG 286 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~---~~~-~~~~eq~~~~--~~advlVGvHG 286 (404)
|++++.-+.- ++.--.++|.+.|++.|.++.+++. +.+ ..+.+-++++ .++|+|||+=|
T Consensus 33 ~~livt~~~~--~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 33 RTLIVTDNML--TKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred EEEEEcCcch--hhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6666764433 4433466899999999988776542 111 2344555555 47899999998
No 111
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.36 E-value=1.8e+02 Score=31.08 Aligned_cols=102 Identities=22% Similarity=0.341 Sum_probs=67.0
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhcc--CCCc
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFL--RPGS 299 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~--~pgs 299 (404)
.++.|-||.=..-..+.--|..|+.+.|++.|.+|..+-+. ..+++| ++-+.+|++-|.+.+ .|+.-+-+| +=|.
T Consensus 157 ~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~-g~s~~d-l~~l~~A~~NIv~~~~~g~~~A~~Le~~fGi 234 (511)
T TIGR01278 157 EKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPW-GASIAD-LARLPAAWLNICPYREIGLMAAEYLKEKFGQ 234 (511)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC-CCCHHH-HHhcccCcEEEEechHHHHHHHHHHHHHhCC
Confidence 46677777543222244567789999999999999876443 355554 555688888777654 554444444 3355
Q ss_pred EEEEEeeCCcccccccchHhHHhhc---CCe
Q 044947 300 VLMQVVPIGTQWLSTVYFEKPARVL---GLE 327 (404)
Q Consensus 300 ~vIEI~P~g~~w~~~~~y~~lA~~~---gl~ 327 (404)
-.+...|.|++. ...+...+++.+ |+.
T Consensus 235 P~i~~~PiG~~~-T~~fL~~l~~~~~~~g~~ 264 (511)
T TIGR01278 235 PYITTTPIGVNA-TRRFIREIAALLNQAGAD 264 (511)
T ss_pred CcccccccCHHH-HHHHHHHHHHHHhhcCCC
Confidence 456569999653 356788899887 765
No 112
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.35 E-value=1.4e+02 Score=31.37 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=64.2
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-h--hhhhhhccCCCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-A--GLTHSLFLRPGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-A--gLtn~lF~~pgs~ 300 (404)
+..|-+|.-... .-+..|+.+.|++.|++|...-+. ..++ |+++.+.+|.+-|.+.+ + .++..|==+=|.-
T Consensus 197 ~~~VNiiG~~~~----~~d~~el~~lL~~~Gl~v~~~~~~-~~s~-eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP 270 (456)
T TIGR01283 197 VHDINLIGEFNV----AGEFWHVKPLLEKLGIRVLATITG-DSRY-AEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIP 270 (456)
T ss_pred CCcEEEEcCCCC----cccHHHHHHHHHHcCCeEEEEeCC-CCcH-HHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 456777763222 236679999999999999864443 3445 66678888888776533 3 3444443344676
Q ss_pred EEEEeeCCcccccccchHhHHhhcCC
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGL 326 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl 326 (404)
.++..|+|++. ...++..+|+.+|.
T Consensus 271 ~~~~~~~G~~~-T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 271 YFEGSFYGIED-TSKALRDIADLFGD 295 (456)
T ss_pred EEecCCCcHHH-HHHHHHHHHHHhCC
Confidence 77777888653 35688999998884
No 113
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=24.33 E-value=3.7e+02 Score=25.78 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=45.4
Q ss_pred HHHHHHHHc-CCeEEEecCCC-----------CCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEEEEE
Q 044947 245 EVKKAAEEL-GFDVTIFEPEE-----------STSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVLMQV 304 (404)
Q Consensus 245 ev~~~l~~~-gf~v~~~~~~~-----------~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~vIEI 304 (404)
++++++++. +..++++.... ..+-.+..++|..||++||.=|-+ +..++.+..-..+|-.
T Consensus 206 ~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~ 278 (318)
T PF13528_consen 206 DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPR 278 (318)
T ss_pred HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeC
Confidence 788888887 46776663321 123367888999999999999999 8999998877777644
No 114
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=24.15 E-value=1.5e+02 Score=30.52 Aligned_cols=59 Identities=12% Similarity=0.314 Sum_probs=38.0
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEec---CCCCC-CHHHHHHHHh--hCCeEEEech
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFE---PEEST-SLADSFRFIH--SCHAMVGVHG 286 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~---~~~~~-~~~eq~~~~~--~advlVGvHG 286 (404)
|+++|.-+.. +..-=.++|.+.|++.|+++.+++ ++.+. .+.+-++++. ++|+|||+=|
T Consensus 23 k~liVtd~~~--~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 23 RAFIVTDRFM--VKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred eEEEEcChhH--HhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6677764333 333345678999999999887654 22122 2445555553 6899999998
No 115
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.06 E-value=2.6e+02 Score=28.82 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=37.0
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEec---CCCC-CCHHHHHHHH--hhCCeEEEechh
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFE---PEES-TSLADSFRFI--HSCHAMVGVHGA 287 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~---~~~~-~~~~eq~~~~--~~advlVGvHGA 287 (404)
+++++..+.- ++.-=.++|.+.|++.|.++.+++ ++.+ ..+.+-++++ .++|+|||+=|-
T Consensus 51 ~~lvv~~~~~--~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGG 116 (395)
T PRK15454 51 HLFVMADSFL--HQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGG 116 (395)
T ss_pred EEEEEcCcch--hhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 6666654322 222125779999999998887663 1111 2244555555 589999999874
No 116
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=24.01 E-value=1.2e+02 Score=26.71 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHH-Hh--hCCeEEEechhhhhhhhccC
Q 044947 241 LNLREVKKAAEELGFDVTIFE--PEESTSLADSFRF-IH--SCHAMVGVHGAGLTHSLFLR 296 (404)
Q Consensus 241 ~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~-~~--~advlVGvHGAgLtn~lF~~ 296 (404)
.|-.-+.+.+++.|+++.... ++..-.+.+.++. .+ .+|++|..=|+|.+--=|.+
T Consensus 20 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~ 80 (152)
T cd00886 20 RSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTP 80 (152)
T ss_pred chHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcH
Confidence 345567788999999977543 2322345555553 34 69999999888876554443
No 117
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=23.68 E-value=1.7e+02 Score=23.68 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechh
Q 044947 243 LREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGA 287 (404)
Q Consensus 243 e~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGA 287 (404)
|.||++.|.+.||.|+-.... ... |||.+=+|-
T Consensus 3 Erel~~~L~~~Gf~v~R~~~S-g~~-----------DiiA~~~~~ 35 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRAAGS-GGG-----------DIIAGKGGR 35 (88)
T ss_dssp HHHHHHHHHHTT-EEEEBSCC-SSS-----------SEEEEETTE
T ss_pred HHHHHHHHHhCCcEEEEecCC-CCc-----------CEEEECCCE
Confidence 679999999999999987543 222 888876653
No 118
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=23.63 E-value=1.2e+02 Score=27.64 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccCCCcEEEEEeeC
Q 044947 228 VLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQVVPI 307 (404)
Q Consensus 228 ~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~pgs~vIEI~P~ 307 (404)
.+++|.+..-+-.-+..++++.|++.|..+.+.+-...-..+.| ++..-++- .+-.....|...-.-+||.|-
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~--~L~~l~i~-----~~~~~~~~~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE--LLKLLEID-----DADGDGVPLIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH--HHHHTT-C---------------CCECEEEESSS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH--HHHhcCCC-----ccccccccchhhcchhheecC
Confidence 78888887556777888999999999999988773211112222 23332333 112344445555455899886
Q ss_pred CcccccccchHhHHhhcCCeEEEE
Q 044947 308 GTQWLSTVYFEKPARVLGLEYLEY 331 (404)
Q Consensus 308 g~~w~~~~~y~~lA~~~gl~Y~~y 331 (404)
. -..+|.++.+..|+.|-+.
T Consensus 108 s----K~~Hf~~i~~~tgI~y~eM 127 (169)
T PF12689_consen 108 S----KTTHFRRIHRKTGIPYEEM 127 (169)
T ss_dssp -----HHHHHHHHHHHH---GGGE
T ss_pred c----hHHHHHHHHHhcCCChhHE
Confidence 4 3579999999999998764
No 119
>PRK09989 hypothetical protein; Provisional
Probab=23.63 E-value=1.6e+02 Score=27.87 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhh
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLT 290 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLt 290 (404)
...|.++.+++.||+-+.+......+.++-.+++.+.++-|..|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~ 64 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPG 64 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCC
Confidence 4678899999999987765433358888888899999998888877654
No 120
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=23.61 E-value=1.1e+02 Score=32.20 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=64.2
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech---hhhhhhhccCCCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG---AGLTHSLFLRPGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG---AgLtn~lF~~pgs~ 300 (404)
+..|-+|.- . ...-|..|+.+.|++.|.++...-.. ..+++| ++-+.+|.+-|.+.+ ..++..|--+=|.-
T Consensus 201 ~~~VNiiG~--~--~~~gd~~el~~lL~~~Gi~v~~~~~g-~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP 274 (461)
T TIGR01860 201 EYTINVIGD--Y--NIQGDTQVLQKYWDKMGIQVIAHFTG-NGTYDD-LRCMHRAQLNVVNCARSAGYIANELKKRYGIP 274 (461)
T ss_pred CCcEEEECC--C--CCcccHHHHHHHHHHcCCcEEEEeCC-CCCHHH-HHhcccCcEEEEECchHHHHHHHHHHHHhCCC
Confidence 346667742 2 33456789999999999999754333 456655 566788887554433 22444444455676
Q ss_pred EEEEeeCCcccccccchHhHHhhcCCe
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
.+++.|+|++. ...+...+|+..|+.
T Consensus 275 ~~~~~p~Gi~~-T~~~L~~la~~~g~~ 300 (461)
T TIGR01860 275 RLDVDTWGFNY-MAEALRKIGAFFGIE 300 (461)
T ss_pred eecCCcCCHHH-HHHHHHHHHHHhCCc
Confidence 78888999653 356889999998864
No 121
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=23.59 E-value=2.5e+02 Score=28.42 Aligned_cols=59 Identities=12% Similarity=0.284 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEec-CCCCCC---HHHHHHHH--hhCCeEEEech
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFE-PEESTS---LADSFRFI--HSCHAMVGVHG 286 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~-~~~~~~---~~eq~~~~--~~advlVGvHG 286 (404)
|++++.-+.. ++.-=.++|.+.|++.|.++.+++ ...+-+ +.+-++.+ .++|+|||+=|
T Consensus 26 ~~liv~~~~~--~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG 90 (370)
T cd08192 26 RPLIVTDPGL--AALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG 90 (370)
T ss_pred eEEEEcCcch--hhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6667765444 443335679999999999887653 111222 34444444 56899999988
No 122
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=23.46 E-value=1.8e+02 Score=29.45 Aligned_cols=60 Identities=13% Similarity=0.385 Sum_probs=37.8
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecC---CCC-CCHHHHHHHH--hhCCeEEEechh
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEP---EES-TSLADSFRFI--HSCHAMVGVHGA 287 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~---~~~-~~~~eq~~~~--~~advlVGvHGA 287 (404)
|++++..++. ++.--.++|.+.|++.|.++.+++. +.+ ..+.+-++.+ .++|+|||+=|-
T Consensus 25 r~livt~~~~--~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 90 (375)
T cd08194 25 RPLIVTDKVM--VKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGG 90 (375)
T ss_pred eEEEEcCcch--hhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6677764443 3321246789999999988876642 111 2244455555 378999999883
No 123
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.28 E-value=1.1e+02 Score=27.72 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHH-HhhCCeEEEechhhhhhhhccCC
Q 044947 240 ILNLREVKKAAEELGFDVTIFE--PEESTSLADSFRF-IHSCHAMVGVHGAGLTHSLFLRP 297 (404)
Q Consensus 240 i~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~-~~~advlVGvHGAgLtn~lF~~p 297 (404)
=.|..-+.+.|++.|+++.... ++....+.+.++. ...+|+||..=|.|.|.-=+.+.
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~e 78 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTRE 78 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHH
Confidence 3456678889999999876432 3323456666653 46799999999999887544443
No 124
>PRK07589 ornithine cyclodeaminase; Validated
Probab=23.00 E-value=1.4e+02 Score=30.33 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=44.6
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh----hhhhhccCCCcEE
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG----LTHSLFLRPGSVL 301 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg----Ltn~lF~~pgs~v 301 (404)
++.+.+|... +.+++.+.+++.|+++.+.+ +.+ +.+.+||||+..-.+. +-..=|++||+.|
T Consensus 156 ~V~v~~r~~~------~a~~~~~~~~~~~~~v~~~~-----~~~---~av~~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV 221 (346)
T PRK07589 156 EIRLYDIDPA------ATAKLARNLAGPGLRIVACR-----SVA---EAVEGADIITTVTADKTNATILTDDMVEPGMHI 221 (346)
T ss_pred EEEEEeCCHH------HHHHHHHHHHhcCCcEEEeC-----CHH---HHHhcCCEEEEecCCCCCCceecHHHcCCCcEE
Confidence 5566665543 55667777777788777643 222 5578999999988753 2344588999987
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
.=|=
T Consensus 222 ~aIG 225 (346)
T PRK07589 222 NAVG 225 (346)
T ss_pred EecC
Confidence 7653
No 125
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=22.79 E-value=1.2e+02 Score=27.48 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=22.7
Q ss_pred HHHhhCCeEEEechh----hhhhhhccCCCcEEEEEe
Q 044947 273 RFIHSCHAMVGVHGA----GLTHSLFLRPGSVLMQVV 305 (404)
Q Consensus 273 ~~~~~advlVGvHGA----gLtn~lF~~pgs~vIEI~ 305 (404)
+++..+|++|..-|. ..-++--|++|+.|.-+-
T Consensus 74 ~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~G 110 (162)
T PF00670_consen 74 EALRDADIFVTATGNKDVITGEHFRQMKDGAILANAG 110 (162)
T ss_dssp HHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESS
T ss_pred HHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccC
Confidence 457899999999995 345677799999987653
No 126
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.76 E-value=1.4e+02 Score=25.95 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEe
Q 044947 245 EVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGV 284 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGv 284 (404)
-+..+|+..||+|+.... ..+.++.++....-++ +||+
T Consensus 18 iv~~~L~~~GfeVidLG~--~v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGV--LSPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEE
Confidence 355688889999998654 5888998888876554 4444
No 127
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.51 E-value=78 Score=27.33 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHH-HhhCCeEEEechhhhhh
Q 044947 241 LNLREVKKAAEELGFDVTIFE--PEESTSLADSFRF-IHSCHAMVGVHGAGLTH 291 (404)
Q Consensus 241 ~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~-~~~advlVGvHGAgLtn 291 (404)
.|-.-+.+.|++.|+++.... ++....+.+.++. +.++|+||-.=|.|.+.
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~ 70 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGP 70 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSST
T ss_pred hHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCccc
Confidence 455667889999999986432 3334566666654 37789999999998665
No 128
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=1.4e+02 Score=30.06 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=41.3
Q ss_pred CCCCEEEEEecCCC-CCccccCHHHHHHHHHHcCCeEEEecCCC---CCCHHHHHHHHhhCC
Q 044947 222 HTKPKLVLVNRNAR-VGRTILNLREVKKAAEELGFDVTIFEPEE---STSLADSFRFIHSCH 279 (404)
Q Consensus 222 ~~~prv~~i~R~~~-~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~---~~~~~eq~~~~~~ad 279 (404)
..-+.+++..|-.. .++.++| -+..+.++.||.|.-+.-.. -+++.||++.+++..
T Consensus 75 ~~~~~vViyNRVpKtGStTf~n--iaydL~ekn~F~vlh~nvtkn~~vlsl~dQ~qfvknIs 134 (361)
T KOG3922|consen 75 KEEMEVVIYNRVPKTGSTTFVN--IAYDLSEKNGFHVLHINVTKNETVLSLPDQQQFVKNIS 134 (361)
T ss_pred cccceEEEEecCCCccchhHHH--HHHHHHhccCceEEEeeccccceeeccHHHHHHHHhhc
Confidence 44668999999653 4488888 24556677899998765431 389999999998754
No 129
>PRK05568 flavodoxin; Provisional
Probab=22.24 E-value=2e+02 Score=24.35 Aligned_cols=51 Identities=12% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMV 282 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlV 282 (404)
+.-++|.|..++. +++. +.+.+.+++.|.++.+.+.. +.... .+.++|.||
T Consensus 3 ~~~IvY~S~~GnT-~~~a--~~i~~~~~~~g~~v~~~~~~-~~~~~----~~~~~d~ii 53 (142)
T PRK05568 3 KINIIYWSGTGNT-EAMA--NLIAEGAKENGAEVKLLNVS-EASVD----DVKGADVVA 53 (142)
T ss_pred eEEEEEECCCchH-HHHH--HHHHHHHHHCCCeEEEEECC-CCCHH----HHHhCCEEE
Confidence 3467888877764 4443 34556666779998887765 34443 366777755
No 130
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=22.13 E-value=1.7e+02 Score=31.48 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=63.7
Q ss_pred CEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hh--hhhhhccCCCcEE
Q 044947 225 PKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AG--LTHSLFLRPGSVL 301 (404)
Q Consensus 225 prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-Ag--Ltn~lF~~pgs~v 301 (404)
.+|-+|.=-. .--+..||.+.|++.|.+|+..-.. -+--++++.+.+|.+-|.+.+ ++ ++..|=-+=|.-.
T Consensus 203 ~~VNliG~~n----~~gD~~eik~lLe~~Gl~v~~~~~g--g~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~ 276 (513)
T TIGR01861 203 HVINYVGEYN----IQGDQEVMVDYFQRMGIQVLSTFTG--NGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPR 276 (513)
T ss_pred CeEEEeCCCC----CccCHHHHHHHHHHCCCeEEEEeCC--CCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCe
Confidence 4555665221 2336789999999999999865443 344466777888888555443 33 3444444556777
Q ss_pred EEEeeCCcccccccchHhHHhhcCCe
Q 044947 302 MQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 302 IEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
+++-|+|++- ...+...+|+..|+.
T Consensus 277 ~~~~~~Gi~~-Td~~Lr~la~~~g~~ 301 (513)
T TIGR01861 277 LDIDGFGFEP-LAASLRKVAMFFGIE 301 (513)
T ss_pred EecCcCCHHH-HHHHHHHHHHHhCCC
Confidence 8888999653 346788999999854
No 131
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=21.83 E-value=1.5e+02 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHH---HHHHhhCCeEEEech
Q 044947 245 EVKKAAEELGFDVTIFEPEESTSLADS---FRFIHSCHAMVGVHG 286 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~~~~~~eq---~~~~~~advlVGvHG 286 (404)
+.++.|++.|.+++++=. +..+.++ ++.+...|+|||-|-
T Consensus 173 ~~v~~lr~~~~D~II~l~--H~G~~~d~~la~~~~giD~IiggH~ 215 (281)
T cd07409 173 KEADKLKAQGVNKIIALS--HSGYEVDKEIARKVPGVDVIVGGHS 215 (281)
T ss_pred HHHHHHHhcCCCEEEEEe--ccCchhHHHHHHcCCCCcEEEeCCc
Confidence 445666666888876532 3444444 344467999999983
No 132
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=21.73 E-value=1.8e+02 Score=30.66 Aligned_cols=70 Identities=9% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCCCEEEEEecCCC------CCccccCHHHH--------HHHHHHc-CCeEEEecCC-CCCCHHHHHHHHh--hCCeEEE
Q 044947 222 HTKPKLVLVNRNAR------VGRTILNLREV--------KKAAEEL-GFDVTIFEPE-ESTSLADSFRFIH--SCHAMVG 283 (404)
Q Consensus 222 ~~~prv~~i~R~~~------~~R~i~Ne~ev--------~~~l~~~-gf~v~~~~~~-~~~~~~eq~~~~~--~advlVG 283 (404)
..++.+++|+=... .+..=+-|.+| .+.|++. |++|+....+ ...++.|-+++.+ +||++|+
T Consensus 188 ~~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFIS 267 (445)
T PRK10431 188 TGDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVS 267 (445)
T ss_pred CCCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34666788876553 12222445543 3344444 7998766543 3589999998887 8999999
Q ss_pred echhhhhh
Q 044947 284 VHGAGLTH 291 (404)
Q Consensus 284 vHGAgLtn 291 (404)
+|--+..+
T Consensus 268 IHaNa~~~ 275 (445)
T PRK10431 268 IHADAAPN 275 (445)
T ss_pred EccCCCCC
Confidence 99887664
No 133
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=21.63 E-value=3.6e+02 Score=29.02 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=60.8
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCC-CCCCHHHH------------HHHHhhCCeEEEechhhhhhhhccCCCcEEEEE
Q 044947 238 RTILNLREVKKAAEELGFDVTIFEPE-ESTSLADS------------FRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQV 304 (404)
Q Consensus 238 R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~~~~eq------------~~~~~~advlVGvHGAgLtn~lF~~pgs~vIEI 304 (404)
||+-=-.+.++.|.+.||+|.+-... ....|.|. .+++ +||+|+.+..-.....=+|++|.++|-.
T Consensus 14 ~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~P~~~e~~~l~~g~~li~~ 92 (509)
T PRK09424 14 TRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNAPSDDEIALLREGATLVSF 92 (509)
T ss_pred eEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCCCCHHHHHhcCCCCEEEEE
Confidence 66665667777788899998775431 12333221 1345 6999999999988888899999999887
Q ss_pred eeCCcccccccchHhHHhhcCCeEEEEEe
Q 044947 305 VPIGTQWLSTVYFEKPARVLGLEYLEYKI 333 (404)
Q Consensus 305 ~P~g~~w~~~~~y~~lA~~~gl~Y~~y~i 333 (404)
+-+. .....-+.....|+.-++|+.
T Consensus 93 l~p~----~~~~l~~~l~~~~it~ia~e~ 117 (509)
T PRK09424 93 IWPA----QNPELLEKLAARGVTVLAMDA 117 (509)
T ss_pred eCcc----cCHHHHHHHHHcCCEEEEeec
Confidence 6332 122233334556788888764
No 134
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=21.57 E-value=4e+02 Score=24.45 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=44.5
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEechh
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGVHGA 287 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGvHGA 287 (404)
..++++++..=.+. ..=+...-+..+++..||+|+.+.. +.|.++.++.+...+. +||+-..
T Consensus 82 ~~~~~vv~~t~~gd--~H~lG~~~v~~~l~~~G~~vi~LG~--~vp~e~~v~~~~~~~pd~v~lS~~ 144 (197)
T TIGR02370 82 EVLGKVVCGVAEGD--VHDIGKNIVVTMLRANGFDVIDLGR--DVPIDTVVEKVKKEKPLMLTGSAL 144 (197)
T ss_pred CCCCeEEEEeCCCc--hhHHHHHHHHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEccc
Confidence 35678877776665 4445555567788889999998765 5999999999987665 5555443
No 135
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=21.53 E-value=2e+02 Score=28.03 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=36.4
Q ss_pred CCEEEEEecCCCCCccc--cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCC-eEEEechh
Q 044947 224 KPKLVLVNRNARVGRTI--LNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCH-AMVGVHGA 287 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i--~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~ad-vlVGvHGA 287 (404)
+.|+.++-=..+.-|.+ ..-..+.++|++.|++++.++.+ ...+.+.+.. ...| |+.+.||.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~-~~~~~~~l~~-~~~d~vf~~lhG~ 67 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDAS-GKELVAKLLE-LKPDKCFVALHGE 67 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCC-chhHHHHhhc-cCCCEEEEeCCCC
Confidence 44666665444443543 45668899999999999988754 2222222222 1345 45677763
No 136
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=21.51 E-value=91 Score=32.40 Aligned_cols=94 Identities=20% Similarity=0.335 Sum_probs=59.2
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEec--hhhhhhhhccCCCcEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVH--GAGLTHSLFLRPGSVL 301 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvH--GAgLtn~lF~~pgs~v 301 (404)
+.++.++.--. .-+..|+.+.|++.|+++..+-++ .++.| +..+..+-.++..+ +..++..| -+-|.-.
T Consensus 166 ~~~VniiG~~~-----~~d~~el~~lL~~~Gi~v~~~lp~--~~~~d-~~~~~~~~~~~~~~~~~~~~A~~L-~~~GiP~ 236 (427)
T PRK02842 166 HPSLVLVGSLA-----DVVEDQLTLEFKKLGIGVVGFLPA--RRFTE-LPAIGPGTVVALAQPFLSDTARAL-RERGAKV 236 (427)
T ss_pred CCcEEEEEeCC-----cchHHHHHHHHHHcCCeeEEEeCC--ccHHH-HhhcCcCcEEEEeCHHHHHHHHHH-HHcCCcc
Confidence 44566665422 234689999999999998733343 44544 45554444544444 44555556 5556666
Q ss_pred EEE-eeCCcccccccchHhHHhhcCCe
Q 044947 302 MQV-VPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 302 IEI-~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
+.. +|+|++- ...++..+|+..|+.
T Consensus 237 ~~~~~P~G~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 237 LTAPFPLGPEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred ccCCCCcChHH-HHHHHHHHHHHhCcC
Confidence 555 7888653 457889999998864
No 137
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=21.25 E-value=1.7e+02 Score=30.82 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=62.8
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhh-hhhhccC--CCcE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGL-THSLFLR--PGSV 300 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgL-tn~lF~~--pgs~ 300 (404)
+.+|-+|.= . -.--|..|+.+.|++.|.+++..-.. +.+ -|+++.+.+|.+-|.+...++ .-+=+|. =|.-
T Consensus 207 ~~~VNiiG~--~--~~~gd~~eik~lL~~~Gi~v~~~~sg-~~t-~~~i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP 280 (466)
T TIGR01282 207 PYDVAIIGD--Y--NIGGDAWESRILLEEIGLRVVAQWSG-DGT-LNEMENAPKAKLNLIHCYRSMNYISRHMEEKYGIP 280 (466)
T ss_pred CCeEEEEec--C--CCcccHHHHHHHHHHcCCeEEEEECC-CCC-HHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCc
Confidence 457777752 1 22347789999999999998854333 344 456677888888776633222 1133443 3677
Q ss_pred EEEEeeCCcccccccchHhHHhhcCC
Q 044947 301 LMQVVPIGTQWLSTVYFEKPARVLGL 326 (404)
Q Consensus 301 vIEI~P~g~~w~~~~~y~~lA~~~gl 326 (404)
.+++.|+|++. ...+++.+|+..|.
T Consensus 281 ~~~~~~~Gi~~-T~~~Lr~ia~~~g~ 305 (466)
T TIGR01282 281 WMEYNFFGPTK-IAESLRKIAEFFDD 305 (466)
T ss_pred eEeCCCCCHHH-HHHHHHHHHHHHCc
Confidence 78887889653 35688999998884
No 138
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=21.24 E-value=2.8e+02 Score=29.85 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCeEEEecCCCC------------CCH-HHHHHHH----hhCCeEEEechh-------hhhhhhc--cCCC
Q 044947 245 EVKKAAEELGFDVTIFEPEES------------TSL-ADSFRFI----HSCHAMVGVHGA-------GLTHSLF--LRPG 298 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~~------------~~~-~eq~~~~----~~advlVGvHGA-------gLtn~lF--~~pg 298 (404)
+-++.+++.|.+.+.++.... ..+ +.|.+++ ..+||+|...|. .++...+ |+||
T Consensus 199 ~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG 278 (509)
T PRK09424 199 EVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG 278 (509)
T ss_pred HHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC
Confidence 566778888988655443211 122 2333443 469999999986 2244443 8999
Q ss_pred cEEEEEe
Q 044947 299 SVLMQVV 305 (404)
Q Consensus 299 s~vIEI~ 305 (404)
++++.+-
T Consensus 279 gvIVdvg 285 (509)
T PRK09424 279 SVIVDLA 285 (509)
T ss_pred CEEEEEc
Confidence 9999884
No 139
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=21.19 E-value=2.2e+02 Score=28.61 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=43.8
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH---hhCCeEEEechh
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI---HSCHAMVGVHGA 287 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~---~~advlVGvHGA 287 (404)
..-..++++.|.+. +++++.+++.|..|..+. +-++.--+... +..|+++|.-||
T Consensus 156 v~dltV~vLdRpRH--------~~lI~eiR~~Gari~Li~---DGDVa~ai~~~~~~s~vD~~~GiGGa 213 (319)
T PRK09479 156 VSDLTVVVLDRPRH--------EELIAEIREAGARVKLIS---DGDVAGAIATAFPDTGVDILMGIGGA 213 (319)
T ss_pred hhHeEEEEEcCchH--------HHHHHHHHHcCCeEEEec---cccHHHHHHHhcCCCCeeEEEEcCcC
Confidence 35568899999875 589999999999999886 45666666555 567999999997
No 140
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.14 E-value=3.1e+02 Score=27.83 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecC-CCC---CCHHHHHHHHh--hCCeEEEechh
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEP-EES---TSLADSFRFIH--SCHAMVGVHGA 287 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~-~~~---~~~~eq~~~~~--~advlVGvHGA 287 (404)
|++++..+.. ++.--.+++.+.|++.|.++.+++. ..+ ..+.+.++.++ ++|+|||+=|-
T Consensus 30 ~~livt~~~~--~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 95 (377)
T cd08188 30 KVLLVSDPGV--IKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGG 95 (377)
T ss_pred eEEEEeCcch--hhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6677765443 4433467899999999988876541 111 22444454553 78999999883
No 141
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=20.98 E-value=2.9e+02 Score=28.04 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=38.0
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCC-CC---CCHHHHHHHH--hhCCeEEEech
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPE-ES---TSLADSFRFI--HSCHAMVGVHG 286 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~---~~~~eq~~~~--~~advlVGvHG 286 (404)
|++++..+.. ++.--.+++.+.|++.|.++.+++.. .+ ..+.+.++.+ .++|+|||+=|
T Consensus 31 r~lvvt~~~~--~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 31 KALVVTDKDL--IKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred EEEEEcCcch--hhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6677765443 44334568899999999888776421 11 2233444454 47899999998
No 142
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.55 E-value=1.6e+02 Score=30.63 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe--EEEechhhhhhhhccCCCcEEEEEeeCCcccccccchHh
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA--MVGVHGAGLTHSLFLRPGSVLMQVVPIGTQWLSTVYFEK 319 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv--lVGvHGAgLtn~lF~~pgs~vIEI~P~g~~w~~~~~y~~ 319 (404)
|..|+.+.|++.|.++..+-+. .+++| ++-+.+|.. +++.+. +.+-.++.+-|.-.++..|.|++. ...+...
T Consensus 178 d~~eik~lL~~~Gi~~~~~~~G--~~~~e-i~~a~~A~~~i~l~~~~-~~a~~l~~~~GvP~~~~~PiG~~~-Td~fL~~ 252 (422)
T TIGR02015 178 DAMVIGGVLQPIGVESGPTVPG--RDWRE-LYAALDSSAVAVLHPFY-EATARLFEAAGVKIVGSAPVGANG-TGEWLER 252 (422)
T ss_pred cHHHHHHHHHHcCCCeEEecCC--CCHHH-HHhhhcCeEEEEeCccc-hHHHHHHHHcCCceeccCCCChHH-HHHHHHH
Confidence 6789999999999999766543 46554 455555544 444443 456777777787778888999653 4568899
Q ss_pred HHhhcCCe
Q 044947 320 PARVLGLE 327 (404)
Q Consensus 320 lA~~~gl~ 327 (404)
+|+..|..
T Consensus 253 la~~~G~~ 260 (422)
T TIGR02015 253 IGEALDLD 260 (422)
T ss_pred HHHHhCcC
Confidence 99999975
No 143
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=20.52 E-value=2.4e+02 Score=26.18 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=43.3
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhh
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEEL-GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGL 289 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~-gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgL 289 (404)
+.+++++||.-.... .---.+.+.++++++ |+++..+.. .+-++..+.+.+||+|+=.=|.-.
T Consensus 29 ~~~~~i~~IptAs~~--~~~~~~~~~~a~~~l~G~~~~~~~~---~~~~~~~~~l~~ad~I~l~GG~~~ 92 (212)
T cd03146 29 KARPKVLFVPTASGD--RDEYTARFYAAFESLRGVEVSHLHL---FDTEDPLDALLEADVIYVGGGNTF 92 (212)
T ss_pred cCCCeEEEECCCCCC--HHHHHHHHHHHHhhccCcEEEEEec---cCcccHHHHHhcCCEEEECCchHH
Confidence 467899999876652 112234577888899 999988763 333444788899999887666433
No 144
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=20.36 E-value=2.1e+02 Score=29.06 Aligned_cols=60 Identities=20% Similarity=0.431 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecC---CCC-CCHHHHHHHHh--hCCeEEEechh
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEP---EES-TSLADSFRFIH--SCHAMVGVHGA 287 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~---~~~-~~~~eq~~~~~--~advlVGvHGA 287 (404)
|++++..+.. ++.-=.+++.+.|++.|.++.+++. +.+ ..+.+-++.++ ++|+|||+=|-
T Consensus 30 ~~lvv~~~~~--~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 95 (377)
T cd08176 30 KALIVTDKGL--VKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGG 95 (377)
T ss_pred eEEEECCchH--hhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6677765443 3322367889999998988877642 111 22445555553 68999999883
No 145
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=20.30 E-value=3.2e+02 Score=27.74 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=37.5
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCC---CCHHHHHHHHh--hCCeEEEechh
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEES---TSLADSFRFIH--SCHAMVGVHGA 287 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~---~~~~eq~~~~~--~advlVGvHGA 287 (404)
|++++.-++. . -.+++.+.|++.|+++.+++...+ ..+.+.++.++ ++|+|||+=|-
T Consensus 24 r~livtd~~~--~---~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 85 (374)
T cd08183 24 RVLLVTGASS--L---RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGG 85 (374)
T ss_pred cEEEEECCch--H---HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 6666664444 3 456788999999988776542212 23455565664 78999999874
No 146
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.22 E-value=6.5e+02 Score=26.06 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=74.7
Q ss_pred cCCCCCEEEEEcCCCchhh----hHHHHHHHhhcCCCceeccCCCceeeeceeEEeccccCCccccCCCCCCCccHHHHH
Q 044947 128 HFPDQDVILAIADCNDQWA----RKYAELLPRFTRHPIININNQTITHCFQSVTLGLISHGRMVINPTLLPKPKTLVDFQ 203 (404)
Q Consensus 128 ~~~~~~v~lvi~d~~~~w~----~~y~~ll~~lS~~~ii~l~~~~~~~CF~~~ivGl~~h~~l~idp~~~p~~~~~~~F~ 203 (404)
|.+.+..||.+.+..+-.. .+|.++.+.|...-..+.+.....--|+.-| |+-. ++.+..+.||.
T Consensus 85 y~~~g~~ql~v~~i~~~g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I-~viT----------s~~gAa~~D~~ 153 (438)
T PRK00286 85 YEPRGDYQLIVEEIEPAGIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRI-GVIT----------SPTGAAIRDIL 153 (438)
T ss_pred ECCCCCEEEEEEEeeeCCccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEE-EEEe----------CCccHHHHHHH
Confidence 3456889999987665333 3555666666655555544333333344311 1110 13344555555
Q ss_pred HHHHhhcCCCCC-----C-C-------------CCCCCCCCEEEEEecCCCCCcc---ccCHHHHHHHHHHcCCeEE-Ee
Q 044947 204 SFLANAYNENTN-----T-S-------------SSFHHTKPKLVLVNRNARVGRT---ILNLREVKKAAEELGFDVT-IF 260 (404)
Q Consensus 204 ~fl~~~~~~~~~-----~-~-------------~~~~~~~prv~~i~R~~~~~R~---i~Ne~ev~~~l~~~gf~v~-~~ 260 (404)
+-+.+.+..-.. . + ... .....+++|.|.|.+ .- ..|+++|++++-+.-..|+ -+
T Consensus 154 ~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~-~~~~Dviii~RGGGS-~eDL~~Fn~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 154 TVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERAN-ARGEDVLIVARGGGS-LEDLWAFNDEAVARAIAASRIPVISAV 231 (438)
T ss_pred HHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhc-CCCCCEEEEecCCCC-HHHhhccCcHHHHHHHHcCCCCEEEec
Confidence 555444321000 0 0 000 112689999999863 32 3499999999988755554 34
Q ss_pred cCCCCCCHHHHHHHHh
Q 044947 261 EPEESTSLADSFRFIH 276 (404)
Q Consensus 261 ~~~~~~~~~eq~~~~~ 276 (404)
.++.+.++.|.++=.+
T Consensus 232 GHE~D~tl~D~vAd~r 247 (438)
T PRK00286 232 GHETDFTIADFVADLR 247 (438)
T ss_pred cCCCCccHHHHhhhcc
Confidence 5555688888876544
No 147
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.20 E-value=3.4e+02 Score=25.77 Aligned_cols=55 Identities=9% Similarity=0.253 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhh------CCe---EEEechhhhhhhhccCCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHS------CHA---MVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~------adv---lVGvHGAgLtn~lF~~pg 298 (404)
..+.|.+.++++||+|.+..--....+.+.++-+.. .|. ++.-||- .|.++...|
T Consensus 31 D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~--~~~l~~~D~ 94 (241)
T smart00115 31 DAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE--EGGIYGTDH 94 (241)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC--CCeEEEecC
Confidence 466788899999999998662212344555554544 333 4566773 477776665
No 148
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=20.16 E-value=2.8e+02 Score=28.10 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=37.4
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecC---CCC-CCHHHHHHHHh--hCCeEEEechh
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEP---EES-TSLADSFRFIH--SCHAMVGVHGA 287 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~---~~~-~~~~eq~~~~~--~advlVGvHGA 287 (404)
|++++.-++.. +..--.+++.+.|++.|.++.+++. +.+ ..+.+-++.+. ++|+|||+=|-
T Consensus 25 r~livt~~~~~-~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 91 (375)
T cd08179 25 KAFIVTGGGSM-KKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGG 91 (375)
T ss_pred eEEEEeCchHH-HhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 55666533221 3333347899999999998877642 212 22445555554 78999999883
Done!