Query 044947
Match_columns 404
No_of_seqs 291 out of 694
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a5o_A Bifunctional protein fo 82.9 3 0.0001 39.9 7.6 73 223-305 160-233 (286)
2 3ngx_A Bifunctional protein fo 81.8 3.5 0.00012 39.2 7.6 72 224-305 150-222 (276)
3 1a4i_A Methylenetetrahydrofola 80.7 3.3 0.00011 39.8 7.1 73 223-305 164-237 (301)
4 3p2o_A Bifunctional protein fo 79.8 4.1 0.00014 38.9 7.3 73 223-305 159-232 (285)
5 3l07_A Bifunctional protein fo 79.1 4.5 0.00015 38.6 7.4 73 223-305 160-233 (285)
6 1b0a_A Protein (fold bifunctio 78.0 4.2 0.00014 38.9 6.8 73 223-305 158-231 (288)
7 4a26_A Putative C-1-tetrahydro 77.6 4.4 0.00015 39.0 6.9 75 223-305 164-239 (300)
8 3czx_A Putative N-acetylmuramo 73.8 5.2 0.00018 35.3 5.9 47 245-291 36-84 (182)
9 3tnl_A Shikimate dehydrogenase 69.5 26 0.0009 33.6 10.3 94 226-329 180-283 (315)
10 4b4u_A Bifunctional protein fo 68.9 13 0.00043 35.8 7.7 72 223-304 178-250 (303)
11 3s40_A Diacylglycerol kinase; 67.6 33 0.0011 32.2 10.5 83 226-308 11-98 (304)
12 2c2x_A Methylenetetrahydrofola 66.0 9.6 0.00033 36.2 6.2 73 223-305 157-232 (281)
13 3t4e_A Quinate/shikimate dehyd 65.0 38 0.0013 32.4 10.4 94 226-329 174-277 (312)
14 1edz_A 5,10-methylenetetrahydr 58.7 13 0.00043 36.1 5.6 76 223-304 176-274 (320)
15 3qay_A Endolysin; amidase A/B 56.6 21 0.00071 31.3 6.3 44 246-289 38-89 (180)
16 2q62_A ARSH; alpha/beta, flavo 55.4 22 0.00076 32.7 6.6 58 223-284 33-105 (247)
17 1jwq_A N-acetylmuramoyl-L-alan 55.4 17 0.00058 31.9 5.5 47 245-291 36-86 (179)
18 2amj_A Modulator of drug activ 53.0 23 0.0008 31.3 6.2 40 245-284 38-77 (204)
19 2fzv_A Putative arsenical resi 51.7 23 0.00077 33.5 6.1 58 223-283 57-129 (279)
20 3don_A Shikimate dehydrogenase 50.2 31 0.0011 32.3 6.8 94 225-329 118-230 (277)
21 3ne8_A N-acetylmuramoyl-L-alan 49.4 25 0.00085 32.3 5.8 45 247-291 40-88 (234)
22 3l4e_A Uncharacterized peptida 48.0 45 0.0015 29.8 7.2 67 224-291 27-93 (206)
23 3rpe_A MDAB, modulator of drug 46.3 24 0.00083 32.0 5.2 41 244-284 50-90 (218)
24 2qv7_A Diacylglycerol kinase D 44.5 91 0.0031 29.5 9.3 83 226-308 26-115 (337)
25 1mkz_A Molybdenum cofactor bio 43.5 53 0.0018 28.3 6.8 69 222-291 8-83 (172)
26 1xov_A PLY protein, plypsa; al 41.0 19 0.00066 34.8 3.8 43 246-288 46-94 (326)
27 3fni_A Putative diflavin flavo 40.7 26 0.00088 29.7 4.2 56 223-282 5-61 (159)
28 3jyo_A Quinate/shikimate dehyd 39.5 25 0.00086 33.0 4.3 88 226-329 153-249 (283)
29 2gt1_A Lipopolysaccharide hept 39.4 79 0.0027 29.3 7.8 83 223-307 177-281 (326)
30 2zuv_A Lacto-N-biose phosphory 39.1 5.4 0.00018 42.5 -0.5 117 223-353 437-591 (759)
31 3tov_A Glycosyl transferase fa 38.5 1.5E+02 0.005 28.2 9.7 83 223-307 184-289 (349)
32 3hly_A Flavodoxin-like domain; 37.4 36 0.0012 28.6 4.6 53 226-282 4-56 (161)
33 4g2n_A D-isomer specific 2-hyd 37.3 83 0.0029 30.4 7.7 94 222-329 26-121 (345)
34 1qtn_A Caspase-8; apoptosis, d 37.3 42 0.0014 29.0 5.0 52 242-298 56-118 (164)
35 2egg_A AROE, shikimate 5-dehyd 37.0 85 0.0029 29.4 7.6 56 270-329 197-260 (297)
36 1psw_A ADP-heptose LPS heptosy 36.0 1.7E+02 0.0059 26.9 9.7 69 238-308 195-290 (348)
37 2dko_A Caspase-3; low barrier 35.2 38 0.0013 28.7 4.4 52 242-298 42-104 (146)
38 3gvx_A Glycerate dehydrogenase 34.9 1.5E+02 0.0052 27.7 9.0 132 245-402 136-286 (290)
39 3h11_A CAsp8 and FADD-like apo 32.6 59 0.002 30.4 5.6 66 223-299 42-119 (272)
40 4e5n_A Thermostable phosphite 32.3 73 0.0025 30.5 6.4 81 244-329 13-94 (330)
41 2h54_A Caspase-1; allosteric s 31.2 73 0.0025 27.8 5.7 48 225-275 44-96 (178)
42 2ql9_A Caspase-7; cysteine pro 31.1 36 0.0012 29.8 3.6 70 224-298 44-132 (173)
43 1nw9_B Caspase 9, apoptosis-re 31.1 37 0.0013 31.7 3.9 44 242-288 47-101 (277)
44 2j32_A Caspase-3; Pro-caspase3 30.9 45 0.0015 30.7 4.4 52 242-298 42-104 (250)
45 2yxb_A Coenzyme B12-dependent 30.7 1.3E+02 0.0044 25.5 7.1 59 222-284 16-75 (161)
46 4dio_A NAD(P) transhydrogenase 30.7 74 0.0025 31.6 6.2 35 271-305 269-312 (405)
47 2fi0_A Conserved domain protei 30.4 34 0.0012 25.9 2.9 21 238-258 58-78 (81)
48 4gud_A Imidazole glycerol phos 29.6 70 0.0024 27.8 5.4 44 226-284 4-47 (211)
49 2pjk_A 178AA long hypothetical 28.8 94 0.0032 26.9 5.9 70 222-291 13-95 (178)
50 1m72_A Caspase-1; caspase, cys 28.2 52 0.0018 30.7 4.4 52 242-298 57-119 (272)
51 3zy2_A Putative GDP-fucose pro 28.0 1.1E+02 0.0036 30.1 6.5 63 224-294 279-341 (362)
52 3ezx_A MMCP 1, monomethylamine 27.6 1.1E+02 0.0037 27.3 6.3 63 222-288 90-153 (215)
53 3pwz_A Shikimate dehydrogenase 27.4 1.3E+02 0.0043 27.9 7.0 48 276-327 180-233 (272)
54 3rht_A (gatase1)-like protein; 26.9 30 0.001 32.2 2.5 94 224-328 4-111 (259)
55 3kbq_A Protein TA0487; structu 26.6 49 0.0017 28.9 3.6 72 225-296 4-81 (172)
56 2f62_A Nucleoside 2-deoxyribos 26.5 96 0.0033 26.6 5.5 39 244-284 30-74 (161)
57 3p45_A Caspase-6; protease, hu 26.5 60 0.002 28.6 4.2 53 242-299 70-133 (179)
58 3aek_B Light-independent proto 26.4 51 0.0018 33.8 4.3 103 223-328 152-257 (525)
59 2bfw_A GLGA glycogen synthase; 26.3 94 0.0032 25.9 5.5 53 224-285 70-123 (200)
60 3iwt_A 178AA long hypothetical 26.3 47 0.0016 28.5 3.5 70 222-291 13-95 (178)
61 3sir_A Caspase; hydrolase; 2.6 26.2 61 0.0021 30.0 4.5 53 241-298 44-107 (259)
62 2eez_A Alanine dehydrogenase; 26.1 2E+02 0.0068 27.5 8.4 93 238-335 14-119 (369)
63 3qhp_A Type 1 capsular polysac 25.7 1E+02 0.0034 24.9 5.4 50 224-284 32-81 (166)
64 3u7q_A Nitrogenase molybdenum- 25.5 46 0.0016 33.8 3.7 98 222-326 218-318 (492)
65 2rir_A Dipicolinate synthase, 25.2 93 0.0032 28.9 5.6 81 245-330 171-266 (300)
66 1f1j_A Caspase-7 protease; cas 24.7 50 0.0017 31.5 3.6 52 242-298 95-157 (305)
67 3p2y_A Alanine dehydrogenase/p 24.3 82 0.0028 31.0 5.1 34 272-305 260-302 (381)
68 3gvp_A Adenosylhomocysteinase 23.9 68 0.0023 32.3 4.5 58 245-305 234-307 (435)
69 3h11_B Caspase-8; cell death, 23.9 85 0.0029 29.2 5.0 53 242-299 50-113 (271)
70 2d5c_A AROE, shikimate 5-dehyd 23.8 1.7E+02 0.0058 26.3 7.0 92 226-329 118-226 (263)
71 3pdi_B Nitrogenase MOFE cofact 23.8 34 0.0011 34.5 2.3 101 222-327 167-288 (458)
72 3fbt_A Chorismate mutase and s 23.6 2E+02 0.0068 26.8 7.6 93 224-329 122-234 (282)
73 3o8q_A Shikimate 5-dehydrogena 23.3 47 0.0016 31.1 3.1 48 276-327 186-239 (281)
74 1z0s_A Probable inorganic poly 23.1 1.7E+02 0.0058 27.4 6.9 54 223-290 28-81 (278)
75 2nn3_C Caspase-1; cysteine pro 23.0 77 0.0026 30.3 4.5 52 242-298 85-147 (310)
76 2gk3_A Putative cytoplasmic pr 23.0 29 0.001 31.9 1.5 64 222-285 8-85 (256)
77 3od5_A Caspase-6; caspase doma 22.8 75 0.0026 29.7 4.4 53 242-299 47-110 (278)
78 1ccw_A Protein (glutamate muta 22.7 1.4E+02 0.0047 24.4 5.6 58 224-286 3-62 (137)
79 2fz5_A Flavodoxin; alpha/beta 22.5 77 0.0026 25.0 3.9 48 227-282 4-51 (137)
80 1xmp_A PURE, phosphoribosylami 22.3 1.6E+02 0.0056 25.6 6.1 60 222-286 9-75 (170)
81 2vhw_A Alanine dehydrogenase; 21.8 3.3E+02 0.011 26.1 9.0 91 238-332 14-118 (377)
82 3pzy_A MOG; ssgcid, seattle st 21.6 51 0.0018 28.3 2.7 69 222-291 5-80 (164)
83 1y5e_A Molybdenum cofactor bio 21.6 62 0.0021 27.7 3.3 69 222-291 11-86 (169)
84 3rfq_A Pterin-4-alpha-carbinol 21.4 55 0.0019 28.8 3.0 74 222-295 28-107 (185)
85 3f2v_A General stress protein 21.3 1.2E+02 0.0042 26.5 5.3 40 245-284 21-65 (192)
86 3e4c_A Caspase-1; zymogen, inf 21.2 1.3E+02 0.0045 28.4 5.8 31 242-275 83-113 (302)
87 1fme_A FSD-EY peptide; beta-BE 20.6 69 0.0024 18.9 2.2 18 236-253 8-25 (28)
No 1
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=82.87 E-value=3 Score=39.91 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|.+..+| -+..+|...|..|.+.... +.++.+ .+.+|||+|+.-|+. +-..=|.+||++|
T Consensus 160 ~Gk~vvVvGrs~iVG~------plA~lL~~~gAtVtv~hs~-T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGR------PMALELLLGGCTVTVTHRF-TRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIV 229 (286)
T ss_dssp TTCEEEEECTTSTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-CcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEE
Confidence 3458999999875433 4566777889999987643 456654 478999999998876 6666678999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 230 IDvg 233 (286)
T 4a5o_A 230 IDVG 233 (286)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
No 2
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=81.82 E-value=3.5 Score=39.19 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=54.2
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEEE
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVLM 302 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~vI 302 (404)
.-++++|.|.+..|| -+...|...|..|.+..-. +.++.+ .+++|||+|+.-|+. +-..=|.+||++||
T Consensus 150 Gk~vvVvG~s~iVG~------plA~lL~~~gAtVtv~~~~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVI 219 (276)
T 3ngx_A 150 ENTVTIVNRSPVVGR------PLSMMLLNRNYTVSVCHSK-TKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSVVI 219 (276)
T ss_dssp SCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCEEE
T ss_pred CCEEEEEcCChHHHH------HHHHHHHHCCCeEEEEeCC-cccHHH---hhccCCEEEECCCCCccccHhhccCCcEEE
Confidence 348899999875333 4566778889999988643 566665 478999999998874 55666789999999
Q ss_pred EEe
Q 044947 303 QVV 305 (404)
Q Consensus 303 EI~ 305 (404)
-+-
T Consensus 220 Dvg 222 (276)
T 3ngx_A 220 DVG 222 (276)
T ss_dssp ECC
T ss_pred Eec
Confidence 873
No 3
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=80.65 E-value=3.3 Score=39.82 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=53.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|.+..|| -+...|...|..|.++... +..+. +.+.+|||+|+.-|.. +-..=+.+||++|
T Consensus 164 ~gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 233 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGA------PMHDLLLWNNATVTTCHSK-TAHLD---EEVNKGDILVVATGQPEMVKGEWIKPGAIV 233 (301)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchHHH------HHHHHHHhCCCeEEEEECC-cccHH---HHhccCCEEEECCCCcccCCHHHcCCCcEE
Confidence 4558999999875433 3566777889999887532 34444 4578999999999986 5555567999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 234 IDVg 237 (301)
T 1a4i_A 234 IDCG 237 (301)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9873
No 4
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=79.75 E-value=4.1 Score=38.92 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=54.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|.+..+| -+..+|...|..|.+..-. +..+.+ .+.+|||+|+.-|+. +-..=|++||++|
T Consensus 159 ~Gk~vvVvGrs~iVG~------p~A~lL~~~gAtVtv~h~~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 228 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGR------PMATMLLNAGATVSVCHIK-TKDLSL---YTRQADLIIVAAGCVNLLRSDMVKEGVIV 228 (285)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHTTCSEEEECSSCTTCBCGGGSCTTEEE
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCCCeEEEEeCC-chhHHH---HhhcCCEEEECCCCCCcCCHHHcCCCeEE
Confidence 4558899999875433 4566778889999887643 455554 588999999998875 6566678999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 229 IDVg 232 (285)
T 3p2o_A 229 VDVG 232 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9873
No 5
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=79.10 E-value=4.5 Score=38.62 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=54.0
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|.+..+| -+..+|...|..|.+..-. +..+.+ .+.+|||+|+.-|+. +-..=|++||++|
T Consensus 160 ~Gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~hs~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (285)
T 3l07_A 160 EGAYAVVVGASNVVGK------PVSQLLLNAKATVTTCHRF-TTDLKS---HTTKADILIVAVGKPNFITADMVKEGAVV 229 (285)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-CSSHHH---HHTTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-chhHHH---hcccCCEEEECCCCCCCCCHHHcCCCcEE
Confidence 4458899999875333 4566778889999887533 455654 588999999998875 5555577999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|.+-
T Consensus 230 IDvg 233 (285)
T 3l07_A 230 IDVG 233 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9873
No 6
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=78.03 E-value=4.2 Score=38.92 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|.+..|| -+...|...|..|.++... +..+. +.+.+|||+|+.-|+. +-..=|.+||++|
T Consensus 158 ~gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~lI~~~~vk~GavV 227 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGR------PMSMELLLAGCTTTVTHRF-TKNLR---HHVENADLLIVAVGKPGFIPGDWIKEGAIV 227 (288)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHTTTCEEEEECSS-CSCHH---HHHHHCSEEEECSCCTTCBCTTTSCTTCEE
T ss_pred CCCEEEEECCChHHHH------HHHHHHHHCCCeEEEEeCC-chhHH---HHhccCCEEEECCCCcCcCCHHHcCCCcEE
Confidence 4558999999875443 3556677789999987633 44454 4578999999999976 5555567999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 228 IDVg 231 (288)
T 1b0a_A 228 IDVG 231 (288)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9873
No 7
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=77.63 E-value=4.4 Score=38.99 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|.+..+| -+..+|...|..|.+..-. +.++. ..+.+.+|||+|+.-|.. +-..=|++||++|
T Consensus 164 ~Gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~~~~-T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 235 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGA------PVAALLMKENATVTIVHSG-TSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAV 235 (300)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECTT-SCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCCCeEEEEeCC-CCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEE
Confidence 4458899999875333 4566777889999887632 33333 015789999999998875 5556678999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 236 IDvg 239 (300)
T 4a26_A 236 VDVG 239 (300)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9874
No 8
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=73.76 E-value=5.2 Score=35.34 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHHHc-CCeEEEecCC-CCCCHHHHHHHHhhCCeEEEechhhhhh
Q 044947 245 EVKKAAEEL-GFDVTIFEPE-ESTSLADSFRFIHSCHAMVGVHGAGLTH 291 (404)
Q Consensus 245 ev~~~l~~~-gf~v~~~~~~-~~~~~~eq~~~~~~advlVGvHGAgLtn 291 (404)
.|.+.|++. |++|+....+ ...++.+-+++.++||++|+.|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 36 IVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred HHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 345566777 9999876643 2479999999999999999999766554
No 9
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=69.47 E-value=26 Score=33.57 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=59.7
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhh---------hhcc
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEE-LGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTH---------SLFL 295 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~-~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn---------~lF~ 295 (404)
++++++|+.. .....+++.+.+.+ .|.++.....+ +..+--+.+..+|+||..-.+||.. .-++
T Consensus 180 ~V~i~nR~~~---~~~~a~~la~~~~~~~~~~~~~~~~~---~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l 253 (315)
T 3tnl_A 180 EISIFNRKDD---FYANAEKTVEKINSKTDCKAQLFDIE---DHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADML 253 (315)
T ss_dssp EEEEEECSST---THHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGC
T ss_pred EEEEEECCCc---hHHHHHHHHHHhhhhcCCceEEeccc---hHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHc
Confidence 6777777632 12334455555544 36666555432 2333335678999999888888752 1246
Q ss_pred CCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 296 RPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 296 ~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
+++.+|++++-.- ..+.|-..|+..|.+..
T Consensus 254 ~~~~~V~DlvY~P----~~T~ll~~A~~~G~~~~ 283 (315)
T 3tnl_A 254 RPELIVSDVVYKP----TKTRLLEIAEEQGCQTL 283 (315)
T ss_dssp CTTCEEEESCCSS----SSCHHHHHHHHTTCEEE
T ss_pred CCCCEEEEeccCC----CCCHHHHHHHHCCCeEe
Confidence 7889999987222 25778889999998644
No 10
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=68.93 E-value=13 Score=35.81 Aligned_cols=72 Identities=22% Similarity=0.406 Sum_probs=54.0
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~pgs~v 301 (404)
.--++++|.|....||- +..+|.+.|..|.+.... +.++.+ ..++|||+|+.-| +++-..=|.+||++|
T Consensus 178 ~Gk~vvViGRS~iVGkP------la~LL~~~~ATVTi~Hs~-T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~GavV 247 (303)
T 4b4u_A 178 AGKHAVVVGRSAILGKP------MAMMLLQANATVTICHSR-TQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAVV 247 (303)
T ss_dssp TTCEEEEECCCTTTHHH------HHHHHHHTTCEEEEECTT-CSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCEE
T ss_pred CCCEEEEEeccccccch------HHHHHHhcCCEEEEecCC-CCCHHH---HhhcCCeEEeccCCCCccccccccCCCEE
Confidence 44588999998876654 345567779999887543 566665 4779999998766 556666689999999
Q ss_pred EEE
Q 044947 302 MQV 304 (404)
Q Consensus 302 IEI 304 (404)
|-+
T Consensus 248 IDV 250 (303)
T 4b4u_A 248 VDA 250 (303)
T ss_dssp EEC
T ss_pred EEe
Confidence 985
No 11
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=67.62 E-value=33 Score=32.24 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=52.5
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH-hhCCeEEEechhhhhhh----hccCCCcE
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI-HSCHAMVGVHGAGLTHS----LFLRPGSV 300 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~-~~advlVGvHGAgLtn~----lF~~pgs~ 300 (404)
-++|++-....++...-.+++.+.|++.|.++.+...+......++++.+ ..+|.+|.+=|-|--|. +.-.+...
T Consensus 11 ~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~~~~~~ 90 (304)
T 3s40_A 11 VLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPLEIRP 90 (304)
T ss_dssp EEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTTCSSCC
T ss_pred EEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhhCCCCC
Confidence 34455544333332223467888999999988776544334455555443 47899999999986554 43323446
Q ss_pred EEEEeeCC
Q 044947 301 LMQVVPIG 308 (404)
Q Consensus 301 vIEI~P~g 308 (404)
-|=++|.|
T Consensus 91 ~l~iiP~G 98 (304)
T 3s40_A 91 TLAIIPGG 98 (304)
T ss_dssp EEEEEECS
T ss_pred cEEEecCC
Confidence 68889999
No 12
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=65.97 E-value=9.6 Score=36.23 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=52.3
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCc
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEEL--GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGS 299 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~--gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs 299 (404)
..-++++|.|.+..+| -+...|... |..|.+.... +..+ .+.+++|||+|+.-|+. +-..=+.+||+
T Consensus 157 ~gk~vvVvG~s~iVG~------p~A~lL~~~g~~atVtv~h~~-t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~Ga 226 (281)
T 2c2x_A 157 AGAHVVVIGRGVTVGR------PLGLLLTRRSENATVTLCHTG-TRDL---PALTRQADIVVAAVGVAHLLTADMVRPGA 226 (281)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHTSTTTCCEEEEECTT-CSCH---HHHHTTCSEEEECSCCTTCBCGGGSCTTC
T ss_pred CCCEEEEECCCcHHHH------HHHHHHhcCCCCCEEEEEECc-hhHH---HHHHhhCCEEEECCCCCcccCHHHcCCCc
Confidence 4558999998765333 245566677 7888887532 3344 45578999999999976 65556679999
Q ss_pred EEEEEe
Q 044947 300 VLMQVV 305 (404)
Q Consensus 300 ~vIEI~ 305 (404)
+||-+-
T Consensus 227 vVIDVg 232 (281)
T 2c2x_A 227 AVIDVG 232 (281)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999873
No 13
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=64.97 E-value=38 Score=32.36 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=59.9
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhh---h------hhcc
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEE-LGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLT---H------SLFL 295 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~-~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLt---n------~lF~ 295 (404)
++++++|+.. | ....+++.+.+.+ .|..+...+.+ ++.+-.+.+..+|+||..-.+||. . .-++
T Consensus 174 ~v~v~nRt~~--~-~~~a~~la~~~~~~~~~~v~~~~~~---~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l 247 (312)
T 3t4e_A 174 EIKLFNRKDD--F-FEKAVAFAKRVNENTDCVVTVTDLA---DQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLL 247 (312)
T ss_dssp EEEEEECSST--H-HHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGS
T ss_pred EEEEEECCCc--h-HHHHHHHHHHhhhccCcceEEechH---hhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHc
Confidence 6777777643 2 3334455555543 36666655432 332224567899999999888872 1 1246
Q ss_pred CCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 296 RPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 296 ~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
+++.+|++++-.- ..+.|-..|+..|.+..
T Consensus 248 ~~~~~v~D~vY~P----~~T~ll~~A~~~G~~~~ 277 (312)
T 3t4e_A 248 RPELLVTECVYNP----HMTKLLQQAQQAGCKTI 277 (312)
T ss_dssp CTTCEEEECCCSS----SSCHHHHHHHHTTCEEE
T ss_pred CCCCEEEEeccCC----CCCHHHHHHHHCCCeEE
Confidence 7888999987222 25778889999998644
No 14
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=58.73 E-value=13 Score=36.07 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCC---------------CC------CCHHHHHHHHhhCCeE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPE---------------ES------TSLADSFRFIHSCHAM 281 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~---------------~~------~~~~eq~~~~~~advl 281 (404)
..-++++|.|....|| -+...|...|..|.+++-. .. .+..+--+.+++|||+
T Consensus 176 ~gk~vvVIG~G~iVG~------~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIV 249 (320)
T 1edz_A 176 YGKKCIVINRSEIVGR------PLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV 249 (320)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred CCCEEEEECCCcchHH------HHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEE
Confidence 4558999998764322 2556677789998877421 11 1126667889999999
Q ss_pred EEechhh--hhhhhccCCCcEEEEE
Q 044947 282 VGVHGAG--LTHSLFLRPGSVLMQV 304 (404)
Q Consensus 282 VGvHGAg--Ltn~lF~~pgs~vIEI 304 (404)
|+.-|+. +-..=+++||++||-+
T Consensus 250 IsAtg~p~~vI~~e~vk~GavVIDV 274 (320)
T 1edz_A 250 ITGVPSENYKFPTEYIKEGAVCINF 274 (320)
T ss_dssp EECCCCTTCCBCTTTSCTTEEEEEC
T ss_pred EECCCCCcceeCHHHcCCCeEEEEc
Confidence 9999986 2333446899999887
No 15
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=56.55 E-value=21 Score=31.27 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHHHHcCCeE-EEecCCCC-C----CHHHHHHHHhh--CCeEEEechhhh
Q 044947 246 VKKAAEELGFDV-TIFEPEES-T----SLADSFRFIHS--CHAMVGVHGAGL 289 (404)
Q Consensus 246 v~~~l~~~gf~v-~~~~~~~~-~----~~~eq~~~~~~--advlVGvHGAgL 289 (404)
|.+.|++.|++| +++..+.. . ++.+-+++.++ ||++|+.|--+.
T Consensus 38 l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 38 LADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 345566679996 33322211 2 48888888864 999999997654
No 16
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=55.40 E-value=22 Score=32.75 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=38.7
Q ss_pred CCCEEEEEecCCCCCccccCHH----HHHHHHHHcCCeEEEecCCCCCC-----------HHHHHHHHhhCCeEEEe
Q 044947 223 TKPKLVLVNRNARVGRTILNLR----EVKKAAEELGFDVTIFEPEESTS-----------LADSFRFIHSCHAMVGV 284 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~----ev~~~l~~~gf~v~~~~~~~~~~-----------~~eq~~~~~~advlVGv 284 (404)
...++++|.=.. |.=-|-. .+++.+++.|.+|.+++.. +++ +.+.++.+..||.||=.
T Consensus 33 ~~mkIliI~GS~---r~~s~t~~La~~~~~~l~~~g~eve~idL~-~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 33 HRPRILILYGSL---RTVSYSRLLAEEARRLLEFFGAEVKVFDPS-GLPLPDAAPVSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp SCCEEEEEECCC---CSSCHHHHHHHHHHHHHHHTTCEEEECCCT-TCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCeEEEEEccC---CCCCHHHHHHHHHHHHHhhCCCEEEEEEhh-cCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE
Confidence 456888887332 3222333 3455556679999988875 455 78888999999998743
No 17
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=55.38 E-value=17 Score=31.87 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHHHHHHc-CCeEEEecCC-CCCCHHHHHHHHh--hCCeEEEechhhhhh
Q 044947 245 EVKKAAEEL-GFDVTIFEPE-ESTSLADSFRFIH--SCHAMVGVHGAGLTH 291 (404)
Q Consensus 245 ev~~~l~~~-gf~v~~~~~~-~~~~~~eq~~~~~--~advlVGvHGAgLtn 291 (404)
.|.+.|++. |++|+....+ ...++.+-+++.+ .||++|+.|--+..+
T Consensus 36 ~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~ 86 (179)
T 1jwq_A 36 KVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS 86 (179)
T ss_dssp HHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC
Confidence 345566677 9999876543 2478999999887 699999999766543
No 18
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=53.04 E-value=23 Score=31.29 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe
Q 044947 245 EVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV 284 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv 284 (404)
++++.+++.|.+|.+++.....++.+..+.+..||+||=.
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 4555666679999988876567899999999999998743
No 19
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=51.74 E-value=23 Score=33.51 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCCEEEEEecCC---CCCccccCHHHHHHHHHHcCCeEEEecCCCCCC------------HHHHHHHHhhCCeEEE
Q 044947 223 TKPKLVLVNRNA---RVGRTILNLREVKKAAEELGFDVTIFEPEESTS------------LADSFRFIHSCHAMVG 283 (404)
Q Consensus 223 ~~prv~~i~R~~---~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~------------~~eq~~~~~~advlVG 283 (404)
..++|++|.=.. +..+.+++ ++++.+++.|.+|.+++.. +++ +.+-++.+..||.||=
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~--~~~~~l~~~G~eveiidL~-dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVE--EAARLLQFFGAETRIFDPS-DLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHH--HHHHHHHHTTCEEEEBCCT-TCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHH--HHHHHHhhCCCEEEEEehh-cCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 456888887322 21133332 3556666779999998876 344 7778899999999874
No 20
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=50.24 E-value=31 Score=32.32 Aligned_cols=94 Identities=9% Similarity=0.074 Sum_probs=57.5
Q ss_pred CEEEEEecCCCCCccccCHHHHHHHHHHcCC-eEEEecCCC-----------CCCHHHHHHHHhhCCeEEEechhhhhhh
Q 044947 225 PKLVLVNRNARVGRTILNLREVKKAAEELGF-DVTIFEPEE-----------STSLADSFRFIHSCHAMVGVHGAGLTHS 292 (404)
Q Consensus 225 prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf-~v~~~~~~~-----------~~~~~eq~~~~~~advlVGvHGAgLtn~ 292 (404)
.+++++.-.+. -..++..|.+.|+ +|.++.-.. ..++.+.-+.+..+|+||..-.+|+..-
T Consensus 118 k~vlvlGaGg~-------g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~ 190 (277)
T 3don_A 118 AYILILGAGGA-------SKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGN 190 (277)
T ss_dssp CCEEEECCSHH-------HHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC------
T ss_pred CEEEEECCcHH-------HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCC
Confidence 35677764332 1246667777888 677664321 1245665566889999999888887432
Q ss_pred -------hccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 293 -------LFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 293 -------lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
-+++++++|+++.-.- ..+.+...|+..|.+..
T Consensus 191 ~~~~l~~~~l~~~~~V~D~vY~P----~~T~ll~~A~~~G~~~~ 230 (277)
T 3don_A 191 TDSVISLNRLASHTLVSDIVYNP----YKTPILIEAEQRGNPIY 230 (277)
T ss_dssp -CCSSCCTTCCSSCEEEESCCSS----SSCHHHHHHHHTTCCEE
T ss_pred CcCCCCHHHcCCCCEEEEecCCC----CCCHHHHHHHHCcCEEe
Confidence 2467889999986221 13567788899998754
No 21
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=49.39 E-value=25 Score=32.26 Aligned_cols=45 Identities=7% Similarity=0.107 Sum_probs=33.3
Q ss_pred HHHHHHcC-CeEEEecCC-CCCCHHHHHHHHh--hCCeEEEechhhhhh
Q 044947 247 KKAAEELG-FDVTIFEPE-ESTSLADSFRFIH--SCHAMVGVHGAGLTH 291 (404)
Q Consensus 247 ~~~l~~~g-f~v~~~~~~-~~~~~~eq~~~~~--~advlVGvHGAgLtn 291 (404)
.+.|++.| ++|+....+ ...++.+-+++.+ .||++|+.|--+..+
T Consensus 40 ~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~ 88 (234)
T 3ne8_A 40 RDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV 88 (234)
T ss_dssp HHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence 44555567 999876543 2478999999887 799999999766543
No 22
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=48.02 E-value=45 Score=29.76 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhh
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTH 291 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn 291 (404)
.+|++||.=.......-.|.+.+.+++++.|+++.+++.. +.+.++..+.+.+||.|+=.-|...+-
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~-~~~~~~~~~~l~~ad~I~l~GG~~~~l 93 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIA-TESLGEITTKLRKNDFIYVTGGNTFFL 93 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTT-TSCHHHHHHHHHHSSEEEECCSCHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCChHHHHHHHHhCCEEEECCCCHHHH
Confidence 4899999632210012236788999999999999887654 356777778899999998666665543
No 23
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=46.33 E-value=24 Score=31.99 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV 284 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv 284 (404)
+++++.+++.|.+|.+.+.....++.+..+.+..||+||=.
T Consensus 50 ~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 50 NVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 34566677779999988876668899999999999998743
No 24
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=44.51 E-value=91 Score=29.53 Aligned_cols=83 Identities=12% Similarity=0.245 Sum_probs=50.7
Q ss_pred EEEEEecCCC-CCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH--hhCCeEEEechhhhhhh----hccCCC
Q 044947 226 KLVLVNRNAR-VGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI--HSCHAMVGVHGAGLTHS----LFLRPG 298 (404)
Q Consensus 226 rv~~i~R~~~-~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlVGvHGAgLtn~----lF~~pg 298 (404)
++++|-...+ .++...-.+++.+.|++.|+++.+...+......++++.. ..+|++|.+=|=|-.|. +.-.+.
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~~~ 105 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPN 105 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTCSS
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhCCC
Confidence 4555544333 2222223467889999999998876544223444544433 35799999999886554 322333
Q ss_pred cEEEEEeeCC
Q 044947 299 SVLMQVVPIG 308 (404)
Q Consensus 299 s~vIEI~P~g 308 (404)
..-|=++|.|
T Consensus 106 ~~pl~iIP~G 115 (337)
T 2qv7_A 106 RPKLGVIPMG 115 (337)
T ss_dssp CCEEEEEECS
T ss_pred CCcEEEecCC
Confidence 4567889999
No 25
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=43.49 E-value=53 Score=28.33 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCCEEEEEecCCCCCccccC--HHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHHhh---CCeEEEechhhhhh
Q 044947 222 HTKPKLVLVNRNARVGRTILN--LREVKKAAEELGFDVTIFE--PEESTSLADSFRFIHS---CHAMVGVHGAGLTH 291 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~N--e~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~~~---advlVGvHGAgLtn 291 (404)
-++||+-+|+=.+.. -++.| -.-+.+.|++.|+++.... ++..-.+.+.++...+ +|+||-.=|.|.+.
T Consensus 8 ~~~~~v~Ii~tGdE~-g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 8 FIPTRIAILTVSNRR-GEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp CCCCEEEEEEECSSC-CGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred CCCCEEEEEEEeCCC-CcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 467888888755543 34554 4467889999999986432 3323466677766543 99999999998875
No 26
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=40.96 E-value=19 Score=34.82 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHcCCeEE-E-ecCC--CCCCHHHHHHHHhh--CCeEEEechhh
Q 044947 246 VKKAAEELGFDVT-I-FEPE--ESTSLADSFRFIHS--CHAMVGVHGAG 288 (404)
Q Consensus 246 v~~~l~~~gf~v~-~-~~~~--~~~~~~eq~~~~~~--advlVGvHGAg 288 (404)
|.+.|++.|++|. + +.-+ ...++.+-+++.++ ||++|+.|--+
T Consensus 46 l~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 46 ASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 3445556699952 2 3222 12567788888775 99999999665
No 27
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=40.74 E-value=26 Score=29.68 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=38.1
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHHHHHhhCCeEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEEST-SLADSFRFIHSCHAMV 282 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~-~~~eq~~~~~~advlV 282 (404)
.+.-++|-|..++. +++.+ .|.+.+++.|.+|.+++.. .. +..+.+..+..+|.+|
T Consensus 5 ~kv~IvY~S~~GnT-~~iA~--~ia~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~d~ii 61 (159)
T 3fni_A 5 TSIGVFYVSEYGYS-DRLAQ--AIINGITKTGVGVDVVDLG-AAVDLQELRELVGRCTGLV 61 (159)
T ss_dssp CEEEEEECTTSTTH-HHHHH--HHHHHHHHTTCEEEEEESS-SCCCHHHHHHHHHTEEEEE
T ss_pred CEEEEEEECCChHH-HHHHH--HHHHHHHHCCCeEEEEECc-CcCCHHHHHHHHHhCCEEE
Confidence 34566677776653 44433 3556666779998888776 46 7888888888888655
No 28
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=39.45 E-value=25 Score=33.03 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=53.9
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhh-------hhccC
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEEL--GFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTH-------SLFLR 296 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~--gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn-------~lF~~ 296 (404)
++++++|+.. ..+++.+.+... +.++...+. -++. +.+..+|+||..-.+|+.. .-+++
T Consensus 153 ~v~i~~R~~~------~a~~la~~~~~~~~~~~i~~~~~---~~l~---~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~ 220 (283)
T 3jyo_A 153 KLQVADLDTS------RAQALADVINNAVGREAVVGVDA---RGIE---DVIAAADGVVNATPMGMPAHPGTAFDVSCLT 220 (283)
T ss_dssp EEEEECSSHH------HHHHHHHHHHHHHTSCCEEEECS---TTHH---HHHHHSSEEEECSSTTSTTSCSCSSCGGGCC
T ss_pred EEEEEECCHH------HHHHHHHHHHhhcCCceEEEcCH---HHHH---HHHhcCCEEEECCCCCCCCCCCCCCCHHHhC
Confidence 4566655432 234455555443 345544432 1232 4567899999888888753 22567
Q ss_pred CCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 297 PGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 297 pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
++.+|++++-.- ..+.|-..|+..|.+..
T Consensus 221 ~~~~v~DlvY~P----~~T~ll~~A~~~G~~~~ 249 (283)
T 3jyo_A 221 KDHWVGDVVYMP----IETELLKAARALGCETL 249 (283)
T ss_dssp TTCEEEECCCSS----SSCHHHHHHHHHTCCEE
T ss_pred CCCEEEEecCCC----CCCHHHHHHHHCcCeEe
Confidence 889999987221 25678888999998754
No 29
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=39.42 E-value=79 Score=29.25 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCCEEEEEecCCCCCcccc--CHHHHHHHHHHcCCeEEEe-cC-------------------CCCCCHHHHHHHHhhCCe
Q 044947 223 TKPKLVLVNRNARVGRTIL--NLREVKKAAEELGFDVTIF-EP-------------------EESTSLADSFRFIHSCHA 280 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~-~~-------------------~~~~~~~eq~~~~~~adv 280 (404)
.+|.+++.-=.+...|++- +..|+++.|.+.|++++.+ .. ...+++.|-+++++.||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 3555555432221225554 4556666665558877664 11 014679999999999999
Q ss_pred EEEechhhhhhhhccCCCcEEEEEeeC
Q 044947 281 MVGVHGAGLTHSLFLRPGSVLMQVVPI 307 (404)
Q Consensus 281 lVGvHGAgLtn~lF~~pgs~vIEI~P~ 307 (404)
+||+= +|.+|+--+ =|.-+|-|+..
T Consensus 257 ~I~~D-SG~~HlAaa-~g~P~v~lfg~ 281 (326)
T 2gt1_A 257 VVSVD-TGLSHLTAA-LDRPNITVYGP 281 (326)
T ss_dssp EEEES-SHHHHHHHH-TTCCEEEEESS
T ss_pred EEecC-CcHHHHHHH-cCCCEEEEECC
Confidence 99994 334444333 36667777744
No 30
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=39.07 E-value=5.4 Score=42.49 Aligned_cols=117 Identities=15% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCEEEEEecCCCCCcccc--------------CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh
Q 044947 223 TKPKLVLVNRNARVGRTIL--------------NLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG 288 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~--------------Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg 288 (404)
...+|-++.=-++. |... ...=++++|...+++|..+..+ .+.+. ......|||| =+|
T Consensus 437 ~~~kVAVLnsWGkl-RSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfd---DI~e~-e~L~d~DVII---n~G 508 (759)
T 2zuv_A 437 GELNVAILNSWGKM-RSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFD---DVLAH-GIDSDIDVII---NGG 508 (759)
T ss_dssp CCSEEEEEESSGGG-GTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHH---HHHHH-CCCTTCCEEE---EEE
T ss_pred cCceEEEEecCCCC-cccccccccccccccccccHHHHHHHHhcCCCceEEecHH---Hhccc-cccccCCEEE---ecC
Confidence 34688888866542 3322 2233899999999999886532 22222 4578999999 556
Q ss_pred hhhhhccCC------------------CcEEEEEeeCC-cc-cccccchHhHHhhcCCeEEEEEeccccchhhhhcC---
Q 044947 289 LTHSLFLRP------------------GSVLMQVVPIG-TQ-WLSTVYFEKPARVLGLEYLEYKIKQEESSLVEKYG--- 345 (404)
Q Consensus 289 Ltn~lF~~p------------------gs~vIEI~P~g-~~-w~~~~~y~~lA~~~gl~Y~~y~i~~~Essl~~~y~--- 345 (404)
.+|.+|+.+ |..+|=+--+. +. + ...-|..||..+|++...+.= . + .++|.
T Consensus 509 ~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~-g~gryFqLADVLGVd~e~g~d-l---p-~gkY~~~~ 582 (759)
T 2zuv_A 509 PVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRF-QTGRFFQLADVIGVDEERYQT-L---S-VDKYFPPV 582 (759)
T ss_dssp CTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEE-ETTEEETTHHHHSEEECCSSC-T---T-BCCBCCCC
T ss_pred cchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccc-cCcccccHHhhcCcccccCCc-C---C-CCcccccc
Confidence 666666665 67787775332 22 1 223444599999998876531 1 1 34555
Q ss_pred -CCCccccC
Q 044947 346 -ANDLVLKN 353 (404)
Q Consensus 346 -~~~~~~~d 353 (404)
.+|+++.|
T Consensus 583 ~~~HfIl~d 591 (759)
T 2zuv_A 583 VPDHFITAD 591 (759)
T ss_dssp CCSCTTTTT
T ss_pred CCCCceecc
Confidence 36877765
No 31
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=38.51 E-value=1.5e+02 Score=28.15 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=52.4
Q ss_pred CCCEEEEEecCCCCCcccc--CHHHHHHHHHHcCCeEEEecC---------------------CCCCCHHHHHHHHhhCC
Q 044947 223 TKPKLVLVNRNARVGRTIL--NLREVKKAAEELGFDVTIFEP---------------------EESTSLADSFRFIHSCH 279 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~~~---------------------~~~~~~~eq~~~~~~ad 279 (404)
.+|.+++.-..+...|++- +..|+++.|.+.|++++.+.. ...+++.|-+++++.||
T Consensus 184 ~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~ 263 (349)
T 3tov_A 184 TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCN 263 (349)
T ss_dssp TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCC
Confidence 3455555433222225553 566888888776888876421 11478999999999999
Q ss_pred eEEEechhhhhhhhccCCCcEEEEEeeC
Q 044947 280 AMVGVHGAGLTHSLFLRPGSVLMQVVPI 307 (404)
Q Consensus 280 vlVGvHGAgLtn~lF~~pgs~vIEI~P~ 307 (404)
++||+= +|.+|+--+ -|.-+|-|+..
T Consensus 264 ~~i~~D-sG~~HlAaa-~g~P~v~lfg~ 289 (349)
T 3tov_A 264 LLITND-SGPMHVGIS-QGVPIVALYGP 289 (349)
T ss_dssp EEEEES-SHHHHHHHT-TTCCEEEECSS
T ss_pred EEEECC-CCHHHHHHh-cCCCEEEEECC
Confidence 999973 444554322 36667777643
No 32
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=37.37 E-value=36 Score=28.64 Aligned_cols=53 Identities=8% Similarity=0.150 Sum_probs=35.4
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEE
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMV 282 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlV 282 (404)
-++|-|..++. +++.+ .|.+.+++.|.+|.+.+.. ..+..+.+.-+.++|.+|
T Consensus 4 ~IvY~S~tGnT-~~~A~--~ia~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~d~ii 56 (161)
T 3hly_A 4 LIGYLSDYGYS-DRLSQ--AIGRGLVKTGVAVEMVDLR-AVDPQELIEAVSSARGIV 56 (161)
T ss_dssp EEEECTTSTTH-HHHHH--HHHHHHHHTTCCEEEEETT-TCCHHHHHHHHHHCSEEE
T ss_pred EEEEECCChHH-HHHHH--HHHHHHHhCCCeEEEEECC-CCCHHHHHHHHHhCCEEE
Confidence 45666766542 33332 3555566679998888766 577888777788888755
No 33
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=37.29 E-value=83 Score=30.40 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=61.2
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhcc--CCCc
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFL--RPGS 299 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~--~pgs 299 (404)
..+|++++..+ + . ++..+.+++. |+|.....+...+-+|.++.+..+|++|...+..++--++- +|+-
T Consensus 26 ~~~~kvlv~~~-------~-~-~~~~~~l~~~-~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~L 95 (345)
T 4g2n_A 26 HPIQKAFLCRR-------F-T-PAIEAELRQR-FDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGL 95 (345)
T ss_dssp -CCCEEEESSC-------C-C-HHHHHHHHHH-SEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTC
T ss_pred CCCCEEEEeCC-------C-C-HHHHHHHHcc-CCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCc
Confidence 35778766432 1 2 2456666665 68876544335788888999999999998765667666664 5688
Q ss_pred EEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 300 VLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 300 ~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
.+|...--|++..+ -..|...|+...
T Consensus 96 k~I~~~~~G~D~id----~~~a~~~gI~V~ 121 (345)
T 4g2n_A 96 KTIATLSVGYDHID----MAAARSLGIKVL 121 (345)
T ss_dssp CEEEESSSCCTTBC----HHHHHHTTCEEE
T ss_pred eEEEEcCCcccccC----HHHHHhCCEEEE
Confidence 88888767755322 234566777544
No 34
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=37.26 E-value=42 Score=29.02 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHH---HHHHHhhCC--------eEEEechhhhhhhhccCCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLAD---SFRFIHSCH--------AMVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~e---q~~~~~~ad--------vlVGvHGAgLtn~lF~~pg 298 (404)
..+.|.+.++++||+|.+.+ +++..| .++-++.-| ++|--||-- +.++...|
T Consensus 56 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~--g~i~g~D~ 118 (164)
T 1qtn_A 56 DAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDG 118 (164)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTS
T ss_pred HHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCC--CEEEeeCC
Confidence 34567888899999998876 455544 444454445 566668753 56666555
No 35
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=37.02 E-value=85 Score=29.37 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=39.1
Q ss_pred HHHHHHhhCCeEEEechhhhhh--------hhccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 270 DSFRFIHSCHAMVGVHGAGLTH--------SLFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 270 eq~~~~~~advlVGvHGAgLtn--------~lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
+-.+.+..+|+||..-|+|+.- .-++++|++|+.+.- . . ..+-+...|+..|.++.
T Consensus 197 ~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y-~--P-~~T~ll~~A~~~G~~~v 260 (297)
T 2egg_A 197 EAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY-N--P-LETKWLKEAKARGARVQ 260 (297)
T ss_dssp HHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC-S--S-SSCHHHHHHHHTTCEEE
T ss_pred HHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC-C--C-CCCHHHHHHHHCcCEEE
Confidence 3345678899999999999841 124568899999863 2 1 13447778888998765
No 36
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=36.03 E-value=1.7e+02 Score=26.94 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=46.4
Q ss_pred cccc--CHHHHHHHHHHcCCeEEEec-------------------------CCCCCCHHHHHHHHhhCCeEEEechhhhh
Q 044947 238 RTIL--NLREVKKAAEELGFDVTIFE-------------------------PEESTSLADSFRFIHSCHAMVGVHGAGLT 290 (404)
Q Consensus 238 R~i~--Ne~ev~~~l~~~gf~v~~~~-------------------------~~~~~~~~eq~~~~~~advlVGvHGAgLt 290 (404)
|++- +..++++.|.+.|+.++.+. ....+++.|-+++++.||++||.= +|..
T Consensus 195 k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~D-sg~~ 273 (348)
T 1psw_A 195 KRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND-SGLM 273 (348)
T ss_dssp GSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES-SHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecC-CHHH
Confidence 5554 56677777766677776531 111478999999999999999984 4445
Q ss_pred hhhccCCCcEEEEEeeCC
Q 044947 291 HSLFLRPGSVLMQVVPIG 308 (404)
Q Consensus 291 n~lF~~pgs~vIEI~P~g 308 (404)
|+--+ =|.-+|-|+...
T Consensus 274 HlAaa-~g~P~v~lfg~t 290 (348)
T 1psw_A 274 HVAAA-LNRPLVALYGPS 290 (348)
T ss_dssp HHHHH-TTCCEEEEESSS
T ss_pred HHHHH-cCCCEEEEECCC
Confidence 55333 466677777554
No 37
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=35.22 E-value=38 Score=28.65 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHH---HHHHhhCC--------eEEEechhhhhhhhccCCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADS---FRFIHSCH--------AMVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq---~~~~~~ad--------vlVGvHGAgLtn~lF~~pg 298 (404)
..+.|.+.++++||+|.+.+ +++..|- ++-++.-| ++|--||- -+.++...|
T Consensus 42 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~--~g~i~g~D~ 104 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCC--CCEEEEeCC
Confidence 34567888899999999876 4555544 44444444 45566775 345555444
No 38
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=34.95 E-value=1.5e+02 Score=27.72 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCeEEEecCCCC-C----CHHHHHHHHhhCCeEEEech--h---hhh---hhhccCCCcEEEEEeeCCccc
Q 044947 245 EVKKAAEELGFDVTIFEPEES-T----SLADSFRFIHSCHAMVGVHG--A---GLT---HSLFLRPGSVLMQVVPIGTQW 311 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~~-~----~~~eq~~~~~~advlVGvHG--A---gLt---n~lF~~pgs~vIEI~P~g~~w 311 (404)
.+.+.|+..|++|...+.... . ...+--+++..||+|+-.-- . ++- .+-.|+||+.+|-+---+.
T Consensus 136 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~-- 213 (290)
T 3gvx_A 136 RVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADV-- 213 (290)
T ss_dssp HHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGG--
T ss_pred HHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcc--
Confidence 577888889999998875421 0 01123345789999875433 1 121 1234899999998642221
Q ss_pred ccccchHhHHh---hcCCeEEEEEeccccchhhhhcCCCCccccCcccc---cCCCcccceeecCCCceEEehHHHHHHH
Q 044947 312 LSTVYFEKPAR---VLGLEYLEYKIKQEESSLVEKYGANDLVLKNPQAF---AGANWSNMRVYLKTQNVKLDIDRFRIYL 385 (404)
Q Consensus 312 ~~~~~y~~lA~---~~gl~Y~~y~i~~~Essl~~~y~~~~~~~~dP~~~---~~~gw~~~~~yl~~qdv~vdi~rf~~~L 385 (404)
..-..+++ .-++.+....+-..|-- +|.+..|..+ |-.||.. .+.+..+.
T Consensus 214 ---vd~~aL~~aL~~g~i~ga~lDV~~~EP~--------~pL~~~~nvilTPHiag~~t-------------~e~~~~~~ 269 (290)
T 3gvx_A 214 ---VSKPDMIGFLKERSDVWYLSDVWWNEPE--------ITETNLRNAILSPHVAGGMS-------------GEIMDIAI 269 (290)
T ss_dssp ---BCHHHHHHHHHHCTTCEEEESCCTTTTS--------CCSCCCSSEEECCSCSSCBT-------------TBCCHHHH
T ss_pred ---cCCcchhhhhhhccceEEeeccccCCcc--------cchhhhhhhhcCccccCCcc-------------chHHHHHH
Confidence 11223332 34566666655444421 4444444321 3333421 12345677
Q ss_pred HHHHHHHHHhhhhhhcc
Q 044947 386 KDAYKKAKKLMDKEIKL 402 (404)
Q Consensus 386 ~~a~~~l~~~~~~~g~~ 402 (404)
+.+++.+.+++.-+|.+
T Consensus 270 ~~~~~ni~~~~~~~~~~ 286 (290)
T 3gvx_A 270 QLAFENVRNFFEGEGHH 286 (290)
T ss_dssp HHHHHHHHHHTC-----
T ss_pred HHHHHHHHhhhcCCCcc
Confidence 77788888888877753
No 39
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=32.56 E-value=59 Score=30.44 Aligned_cols=66 Identities=11% Similarity=0.192 Sum_probs=44.2
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhh---------CC---eEEEechhhhh
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHS---------CH---AMVGVHGAGLT 290 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~---------ad---vlVGvHGAgLt 290 (404)
.+-..+||++.+. ..+.|.+.++++||+|.+.+ +++..|-.+.+.. +| ++|--||- -
T Consensus 42 ~rG~~LIinn~~~------D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~--~ 110 (272)
T 3h11_A 42 PLGICLIIDCIGN------ETELLRDTFTSLGYEVQKFL---HLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGG--S 110 (272)
T ss_dssp SSEEEEEEESSCC------CCSHHHHHHHHHTEEEEEEE---SCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEE--T
T ss_pred cceEEEEECCchH------HHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCC--C
Confidence 3446788887653 55678889999999999876 5665555444432 22 46677886 4
Q ss_pred hhhccCCCc
Q 044947 291 HSLFLRPGS 299 (404)
Q Consensus 291 n~lF~~pgs 299 (404)
+.++...|.
T Consensus 111 g~i~g~D~~ 119 (272)
T 3h11_A 111 QSVYGVDQT 119 (272)
T ss_dssp TEECBTSCC
T ss_pred CeEEEEcCC
Confidence 677766653
No 40
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=32.32 E-value=73 Score=30.49 Aligned_cols=81 Identities=9% Similarity=0.101 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccC-CCcEEEEEeeCCcccccccchHhHHh
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLR-PGSVLMQVVPIGTQWLSTVYFEKPAR 322 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~-pgs~vIEI~P~g~~w~~~~~y~~lA~ 322 (404)
++..+.|++.| +|+........+-+|.++.+.++|++|+..+.-++--++-. |+-.+|...--|++..+ -..|.
T Consensus 13 ~~~~~~l~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~id----~~~~~ 87 (330)
T 4e5n_A 13 EEILQLLAPHC-ELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFD----VDACT 87 (330)
T ss_dssp HHHHHHHTTTC-EEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCTTBC----HHHHH
T ss_pred HHHHHHHHhCC-eEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCcccccC----HHHHH
Confidence 45677777766 77654333346788888999999999986555555444422 67778887777755332 13455
Q ss_pred hcCCeEE
Q 044947 323 VLGLEYL 329 (404)
Q Consensus 323 ~~gl~Y~ 329 (404)
..|+...
T Consensus 88 ~~gI~v~ 94 (330)
T 4e5n_A 88 ARGVWLT 94 (330)
T ss_dssp HTTCEEE
T ss_pred hcCcEEE
Confidence 6677543
No 41
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=31.21 E-value=73 Score=27.81 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=29.2
Q ss_pred CEEEEEecCCC---CCcc--ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 044947 225 PKLVLVNRNAR---VGRT--ILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFI 275 (404)
Q Consensus 225 prv~~i~R~~~---~~R~--i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~ 275 (404)
-..+||.-... ..|. ....+.|.+.++++||+|.+.. +++..|-.+.+
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~---dlt~~em~~~l 96 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKK---NLTASDMTTEL 96 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHH
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHH
Confidence 34566665542 1132 3345567889999999999876 46655544444
No 42
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=31.11 E-value=36 Score=29.80 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=42.0
Q ss_pred CCEEEEEecCCCC------Cccc--cCHHHHHHHHHHcCCeEEEecCCCCCCHHHH---HHHHhhCC--------eEEEe
Q 044947 224 KPKLVLVNRNARV------GRTI--LNLREVKKAAEELGFDVTIFEPEESTSLADS---FRFIHSCH--------AMVGV 284 (404)
Q Consensus 224 ~prv~~i~R~~~~------~R~i--~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq---~~~~~~ad--------vlVGv 284 (404)
+-..+||+-..-. .|.= ...+.|.+.++++||+|.+.+ +++..|- ++.+++-| ++|--
T Consensus 44 rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~---dlt~~em~~~l~~~s~~dh~~~dc~vvvilS 120 (173)
T 2ql9_A 44 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN---DCSCAKMQDLLKKASEEDHTNAACFACILLS 120 (173)
T ss_dssp EEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEES
T ss_pred ceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhhccCCCeEEEeecC
Confidence 3356667655321 1322 335567888899999999876 4555544 44455555 66677
Q ss_pred chhhhhhhhccCCC
Q 044947 285 HGAGLTHSLFLRPG 298 (404)
Q Consensus 285 HGAgLtn~lF~~pg 298 (404)
||-- +.++...|
T Consensus 121 HG~~--g~I~g~D~ 132 (173)
T 2ql9_A 121 HGEE--NVIYGKDG 132 (173)
T ss_dssp CEET--TEEEETTE
T ss_pred CCCC--CEEEEcCC
Confidence 7753 55665555
No 43
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=31.06 E-value=37 Score=31.70 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHH---HHHHHHhh-----CCe---EEEechhh
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLA---DSFRFIHS-----CHA---MVGVHGAG 288 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~---eq~~~~~~-----adv---lVGvHGAg 288 (404)
..+.|.+.++++||+|.+.+ +++.. +.++-++. +|. ++--||-.
T Consensus 47 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~h~~~D~~vv~ilSHG~~ 101 (277)
T 1nw9_B 47 DCEKLRRRFSSLHFMVEVKG---DLTAKKMVLALLELARQDHGALDCCVVVILSHGCQ 101 (277)
T ss_dssp HHHHHHHHHHHTTEEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEc---CCCHHHHHHHHHHHHHhhcccCCeEEEEEeCCCCc
Confidence 45578889999999998876 45544 44444433 332 44458854
No 44
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=30.87 E-value=45 Score=30.70 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHH---HHHHHHhhCC--------eEEEechhhhhhhhccCCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLA---DSFRFIHSCH--------AMVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~---eq~~~~~~ad--------vlVGvHGAgLtn~lF~~pg 298 (404)
..+.|.+.++++||+|.+.+ +++.. +.++-+..-| +++.-||- -+.++...+
T Consensus 42 D~~~l~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D~ 104 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecCC
Confidence 45578889999999999876 45544 4445554444 45566886 355565554
No 45
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.67 E-value=1.3e+02 Score=25.49 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=40.3
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEe
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGV 284 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGv 284 (404)
.++|++++..=.+. -.=+...-+..+|+..||+|+.... ..+.++.++.+...+. +||+
T Consensus 16 ~~~~~vlla~~~gd--~HdiG~~~va~~l~~~G~eVi~lG~--~~p~e~lv~aa~~~~~diV~l 75 (161)
T 2yxb_A 16 RRRYKVLVAKMGLD--GHDRGAKVVARALRDAGFEVVYTGL--RQTPEQVAMAAVQEDVDVIGV 75 (161)
T ss_dssp CCSCEEEEEEESSS--SCCHHHHHHHHHHHHTTCEEECCCS--BCCHHHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEEeCCCC--ccHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEEEE
Confidence 46788877655544 3444555667788999999998654 4888988888874433 3443
No 46
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=30.66 E-value=74 Score=31.65 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=24.3
Q ss_pred HHHHHhhCCeEEEechh-h------hhhhhc--cCCCcEEEEEe
Q 044947 271 SFRFIHSCHAMVGVHGA-G------LTHSLF--LRPGSVLMQVV 305 (404)
Q Consensus 271 q~~~~~~advlVGvHGA-g------Ltn~lF--~~pgs~vIEI~ 305 (404)
..+.+..|||+|+..+. | ++.-++ |+||++||-+-
T Consensus 269 l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 34567899999987531 1 233333 89999999986
No 47
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=30.43 E-value=34 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=18.3
Q ss_pred ccccCHHHHHHHHHHcCCeEE
Q 044947 238 RTILNLREVKKAAEELGFDVT 258 (404)
Q Consensus 238 R~i~Ne~ev~~~l~~~gf~v~ 258 (404)
++=+|.+++++.|++.||+|+
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 445789999999999999996
No 48
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=29.63 E-value=70 Score=27.85 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=32.4
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV 284 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv 284 (404)
+|++|+=... |..-|.++|+++|++++++.. .| .+.++|.||-+
T Consensus 4 ~I~iiD~g~~------n~~si~~al~~~G~~~~v~~~------~~---~l~~~D~lilP 47 (211)
T 4gud_A 4 NVVIIDTGCA------NISSVKFAIERLGYAVTISRD------PQ---VVLAADKLFLP 47 (211)
T ss_dssp CEEEECCCCT------THHHHHHHHHHTTCCEEEECC------HH---HHHHCSEEEEC
T ss_pred EEEEEECCCC------hHHHHHHHHHHCCCEEEEECC------HH---HHhCCCEEEEC
Confidence 5777764333 888899999999999988641 23 35678988876
No 49
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=28.78 E-value=94 Score=26.94 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=46.6
Q ss_pred CCCCEEEEEecCCC--------CCccccCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHH-hh--CCeEEEechhh
Q 044947 222 HTKPKLVLVNRNAR--------VGRTILNLREVKKAAEELGFDVTIFE--PEESTSLADSFRFI-HS--CHAMVGVHGAG 288 (404)
Q Consensus 222 ~~~prv~~i~R~~~--------~~R~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~-~~--advlVGvHGAg 288 (404)
.++||+-+|+=.+. ....=.|-.-+.+.|++.|++++... ++..-.+.+.++.. .+ +|+||-.=|.|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 56788888875531 11333455678889999999986432 33234566666543 44 89999999988
Q ss_pred hhh
Q 044947 289 LTH 291 (404)
Q Consensus 289 Ltn 291 (404)
.+-
T Consensus 93 ~g~ 95 (178)
T 2pjk_A 93 YSP 95 (178)
T ss_dssp SST
T ss_pred CCC
Confidence 765
No 50
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=28.17 E-value=52 Score=30.72 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHH---HHHHHHhhCC--------eEEEechhhhhhhhccCCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLA---DSFRFIHSCH--------AMVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~---eq~~~~~~ad--------vlVGvHGAgLtn~lF~~pg 298 (404)
..+.|.+.++++||+|.+.+ +++.. +.++-+..-| +++.-||- -|.++...+
T Consensus 57 Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~--~~~i~~~D~ 119 (272)
T 1m72_A 57 DSDNLSKVLKTLGFKVTVFP---NLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE--LGMLYAKDT 119 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEECSSS
T ss_pred HHHHHHHHHHHCCCEEEEec---CcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CCEEEecCC
Confidence 35567888999999999876 45544 4455555444 45566884 577776665
No 51
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=27.97 E-value=1.1e+02 Score=30.07 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=47.3
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhc
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLF 294 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF 294 (404)
+.+.|||+=... + -.+||.+++++.+.+|+..+++ ...-|| .+...||++||-+++-+|-.+.
T Consensus 279 ~lksVFIATDa~--~---~~~ELk~~L~~~~v~vv~~~pe--~a~ID~-~I~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 279 GAKSVFVASDKD--H---MIDEINEALKPYEIEAHRQEPD--DMYTSL-AIMGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp TCSEEEEEESSC--C---CHHHHHHHHGGGTCCEECCSSC--CHHHHH-HHHHHSSEEEECTTCHHHHHHH
T ss_pred CCcEEEEecCCH--H---HHHHHHHHhhccCceEEEeCCc--hhHHHH-HHHHhCCEeecCccccccHHHH
Confidence 446678776554 4 4678888898888888877764 445555 6789999999999999987654
No 52
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=27.64 E-value=1.1e+02 Score=27.32 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=42.1
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCe-EEEechhh
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHA-MVGVHGAG 288 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lVGvHGAg 288 (404)
..++++++..=.+. -.=+...-+..+|+..||+|+.+.. ..+.++.++....-+. +||+-|++
T Consensus 90 ~~~~~vll~~v~gd--~HdiG~~iv~~~l~~~G~~Vi~LG~--~vp~e~iv~~~~~~~~d~v~l~~S~ 153 (215)
T 3ezx_A 90 EEAGLAITFVAEGD--IHDIGHRLVTTMLGANGFQIVDLGV--DVLNENVVEEAAKHKGEKVLLVGSA 153 (215)
T ss_dssp --CCEEEEEECTTC--CCCHHHHHHHHHHHHTSCEEEECCS--SCCHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCeEEEEeCCCC--hhHHHHHHHHHHHHHCCCeEEEcCC--CCCHHHHHHHHHHcCCCEEEEEchh
Confidence 46788887765554 3444444567788999999998765 5899998888865544 46663433
No 53
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=27.43 E-value=1.3e+02 Score=27.92 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=35.4
Q ss_pred hhCCeEEEechhhhhhh------hccCCCcEEEEEeeCCcccccccchHhHHhhcCCe
Q 044947 276 HSCHAMVGVHGAGLTHS------LFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 276 ~~advlVGvHGAgLtn~------lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
..+|+||..-.+|+..- =+++++++|++++-. . ..+.|-..|+..|++
T Consensus 180 ~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~---P-~~T~ll~~A~~~G~~ 233 (272)
T 3pwz_A 180 QSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYG---K-GLTPFLRLAREQGQA 233 (272)
T ss_dssp CCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCS---C-CSCHHHHHHHHHSCC
T ss_pred cCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecC---C-CCCHHHHHHHHCCCC
Confidence 57999999988887532 246788999998622 1 246688889999987
No 54
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=26.95 E-value=30 Score=32.23 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCEEEEEecCCCCCcccc-CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEec-hh---------hhhhh
Q 044947 224 KPKLVLVNRNARVGRTIL-NLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVH-GA---------GLTHS 292 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~-Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvH-GA---------gLtn~ 292 (404)
-+|+||+. ++ ..- ..+.+.++|++.||+|.++++. .. .+....+++.|+||=.- ++ +|..
T Consensus 4 m~~vLiV~--g~---~~~~~a~~l~~aL~~~g~~V~~i~~~-~~--~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~- 74 (259)
T 3rht_A 4 MTRVLYCG--DT---SLETAAGYLAGLMTSWQWEFDYIPSH-VG--LDVGELLAKQDLVILSDYPAERMTAQAIDQLVT- 74 (259)
T ss_dssp --CEEEEE--SS---CTTTTHHHHHHHHHHTTCCCEEECTT-SC--BCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHH-
T ss_pred CceEEEEC--CC---CchhHHHHHHHHHHhCCceEEEeccc-cc--ccChhHHhcCCEEEEcCCccccCCHHHHHHHHH-
Confidence 45888885 22 232 3456788999999999998764 22 22335678999998653 22 2333
Q ss_pred hccCCCcEEEEEeeCCccccc-ccchHh--HHhhcCCeE
Q 044947 293 LFLRPGSVLMQVVPIGTQWLS-TVYFEK--PARVLGLEY 328 (404)
Q Consensus 293 lF~~pgs~vIEI~P~g~~w~~-~~~y~~--lA~~~gl~Y 328 (404)
|...|..+|=+--+. .+.. ...|.+ ++..+.++.
T Consensus 75 -yV~~GGgLi~~gG~~-s~~g~~g~~~~t~L~~vLPv~~ 111 (259)
T 3rht_A 75 -MVKAGCGLVMLGGWE-SYHGLGGNWDQTLLAEVLPVDI 111 (259)
T ss_dssp -HHHTTCEEEEECSTT-SSSTTTTCGGGSGGGGTSSEEC
T ss_pred -HHHhCCeEEEecCcc-ccccccCcccccchhhhCCccc
Confidence 345688887664322 1110 123333 566666643
No 55
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.60 E-value=49 Score=28.87 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=46.1
Q ss_pred CEEEEEecCCC---CCccccCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHH-HhhCCeEEEechhhhhhhhccC
Q 044947 225 PKLVLVNRNAR---VGRTILNLREVKKAAEELGFDVTIFE--PEESTSLADSFRF-IHSCHAMVGVHGAGLTHSLFLR 296 (404)
Q Consensus 225 prv~~i~R~~~---~~R~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~-~~~advlVGvHGAgLtn~lF~~ 296 (404)
+|+-+|+=.+. ..+.=.|-.-+.+.|++.|+++.... ++..-.+.+.++. ..++|+||..=|.|.|.-=+.+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~ 81 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTV 81 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccchH
Confidence 55555553321 11333566678899999999986432 3323456666644 4679999999999988643333
No 56
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=26.50 E-value=96 Score=26.59 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCeEEEecCCC-CCC-----HHHHHHHHhhCCeEEEe
Q 044947 244 REVKKAAEELGFDVTIFEPEE-STS-----LADSFRFIHSCHAMVGV 284 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~-~~~-----~~eq~~~~~~advlVGv 284 (404)
+++.+.|++.|++|.. |.. ..+ +..=++.+.+||++|+.
T Consensus 30 ~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ 74 (161)
T 2f62_A 30 NKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIAD 74 (161)
T ss_dssp HHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 5778888999998754 331 222 33336888999999876
No 57
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=26.49 E-value=60 Score=28.58 Aligned_cols=53 Identities=17% Similarity=0.356 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHh---hCC--------eEEEechhhhhhhhccCCCc
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRFIH---SCH--------AMVGVHGAGLTHSLFLRPGS 299 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~---~ad--------vlVGvHGAgLtn~lF~~pgs 299 (404)
..+.|.+.++++||+|.+.+ +++..|-.+.+. +-| ++|--||- -+.++...|.
T Consensus 70 D~~~L~~~F~~LGF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vvvilSHG~--~g~I~g~D~~ 133 (179)
T 3p45_A 70 DRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTVSHADADCFVCVFLSHGE--GNHIYAYDAK 133 (179)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSCCTTBSCEEEEEESCEE--TTEEECSSSE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHhhhhcCCCCEEEEEEeccCC--CCEEEEECCE
Confidence 35567888899999999877 566665555443 333 45666776 3666666654
No 58
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=26.41 E-value=51 Score=33.75 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=70.9
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccCC--Cc
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLRP--GS 299 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~p--gs 299 (404)
.+++|-||.=..-....--|..|+.+.|++.|.+|+.+-+. ..+ -++++-+.+|++-|.++- +|..-+=+|.. |.
T Consensus 152 ~~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pg-g~t-~~ei~~~~~A~~niv~~~~~g~~~A~~Le~r~Gi 229 (525)
T 3aek_B 152 PEVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPL-GAS-PDDLRKLGQAHFNVLMYPETGESAARHLERACKQ 229 (525)
T ss_dssp SSCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEET-TCC-HHHHHTGGGSSEEEECCHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCC-CCC-HHHHHhhccCCEEEEEChhhHHHHHHHHHHHcCC
Confidence 45678888654321122345678999999999999875443 345 456677888998888763 45554555543 56
Q ss_pred EEEEEeeCCcccccccchHhHHhhcCCeE
Q 044947 300 VLMQVVPIGTQWLSTVYFEKPARVLGLEY 328 (404)
Q Consensus 300 ~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y 328 (404)
-.++..|+|++. ...+...+|+..|...
T Consensus 230 P~i~~~PiG~~~-T~~~Lr~ia~~~g~~~ 257 (525)
T 3aek_B 230 PFTKIVPIGVGA-TRDFLAEVSKITGLPV 257 (525)
T ss_dssp CBCCCCCCSHHH-HHHHHHHHHHHHCCCC
T ss_pred CceecCCcCHHH-HHHHHHHHHHHHCCCH
Confidence 666678999653 3568999999999875
No 59
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=26.27 E-value=94 Score=25.92 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=34.4
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEE-ecCCCCCCHHHHHHHHhhCCeEEEec
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTI-FEPEESTSLADSFRFIHSCHAMVGVH 285 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~-~~~~~~~~~~eq~~~~~~advlVGvH 285 (404)
..+++++..... -..+++.+.+++.+ .|.. .. ..+-.|-.++++.||++|.+.
T Consensus 70 ~~~l~i~G~~~~-----~~~~~l~~~~~~~~-~v~~~~g---~~~~~~~~~~~~~ad~~l~ps 123 (200)
T 2bfw_A 70 EMRFIIIGKGDP-----ELEGWARSLEEKHG-NVKVITE---MLSREFVRELYGSVDFVIIPS 123 (200)
T ss_dssp GEEEEEECCBCH-----HHHHHHHHHHHHCT-TEEEECS---CCCHHHHHHHHTTCSEEEECC
T ss_pred CeEEEEECCCCh-----HHHHHHHHHHHhcC-CEEEEec---cCCHHHHHHHHHHCCEEEECC
Confidence 346777765321 01346667777777 5555 43 477788889999999988643
No 60
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=26.27 E-value=47 Score=28.52 Aligned_cols=70 Identities=11% Similarity=0.221 Sum_probs=42.8
Q ss_pred CCCCEEEEEecCCC------CCccc--cCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHH---hhCCeEEEechhh
Q 044947 222 HTKPKLVLVNRNAR------VGRTI--LNLREVKKAAEELGFDVTIFE--PEESTSLADSFRFI---HSCHAMVGVHGAG 288 (404)
Q Consensus 222 ~~~prv~~i~R~~~------~~R~i--~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~---~~advlVGvHGAg 288 (404)
++++|+-+|.=.++ ..=.+ .|-.-|.+.|++.|++|+... ++..-.+.+.++.. ..+|+||..=|.|
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 45677777652221 00122 244567889999999986433 33223455555533 4689999999999
Q ss_pred hhh
Q 044947 289 LTH 291 (404)
Q Consensus 289 Ltn 291 (404)
.|.
T Consensus 93 ~~~ 95 (178)
T 3iwt_A 93 YSP 95 (178)
T ss_dssp SST
T ss_pred cCC
Confidence 775
No 61
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=26.15 E-value=61 Score=29.96 Aligned_cols=53 Identities=13% Similarity=0.349 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHcCCeEEEecCCCCCCHH---HHHHHHhhCC--------eEEEechhhhhhhhccCCC
Q 044947 241 LNLREVKKAAEELGFDVTIFEPEESTSLA---DSFRFIHSCH--------AMVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 241 ~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~---eq~~~~~~ad--------vlVGvHGAgLtn~lF~~pg 298 (404)
...+.|.+.++++||+|.+.+ +++.. +.++-++.-| +++.-||-. +.++...+
T Consensus 44 ~D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~~--g~i~~~D~ 107 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEVTVYK---DCRYKDILRTIEYSASQNHSDSDCILVAILSHGEM--GYIYAKDT 107 (259)
T ss_dssp CHHHHHHHHHHHTTCEEEEEE---ECSHHHHHHHHHHHHTSCCTTEEEEEEEEEECTTC--CCCCCTTH
T ss_pred HHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhhccCCCEEEEEEecCCCC--CeEEeCCC
Confidence 346678889999999999876 45544 4455554433 456668865 55555443
No 62
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=26.10 E-value=2e+02 Score=27.53 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=56.2
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCC---CCCCHHHHHH----------HHhhCCeEEEechhhhhhhhccCCCcEEEEE
Q 044947 238 RTILNLREVKKAAEELGFDVTIFEPE---ESTSLADSFR----------FIHSCHAMVGVHGAGLTHSLFLRPGSVLMQV 304 (404)
Q Consensus 238 R~i~Ne~ev~~~l~~~gf~v~~~~~~---~~~~~~eq~~----------~~~~advlVGvHGAgLtn~lF~~pgs~vIEI 304 (404)
||+-=..+-++.|.+.|++|.+-... ...+=.|-.+ .+ +||+||++-----...-.+++|..+|-.
T Consensus 14 ~Rv~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~vk~p~~~~~~~l~~~~~~~~~ 92 (369)
T 2eez_A 14 NRVALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKVKEPLPEEYGFLREGLILFTY 92 (369)
T ss_dssp CCCSSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECSSCCCGGGGGGCCTTCEEEEC
T ss_pred ceeCcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEECCCCHHHHhhcCCCcEEEEE
Confidence 55555557777888899999763211 1233222222 56 8999998775444445667899888765
Q ss_pred eeCCcccccccchHhHHhhcCCeEEEEEecc
Q 044947 305 VPIGTQWLSTVYFEKPARVLGLEYLEYKIKQ 335 (404)
Q Consensus 305 ~P~g~~w~~~~~y~~lA~~~gl~Y~~y~i~~ 335 (404)
.-.+. ....-......|+..++|+...
T Consensus 93 ~~~~~----~~~~~~~l~~~gi~~ia~e~~~ 119 (369)
T 2eez_A 93 LHLAA----DRGLTEAMLRSGVTGIAYETVQ 119 (369)
T ss_dssp CCGGG----CHHHHHHHHHHTCEEEEGGGCC
T ss_pred ecccC----CHHHHHHHHHCCCeEEEeeccc
Confidence 54332 2233344567889988875433
No 63
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=25.68 E-value=1e+02 Score=24.88 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=37.0
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEe
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGV 284 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGv 284 (404)
..+++++.... ..+++.+.+++.|..+.. . ..+-.+-.++++.||++|.+
T Consensus 32 ~~~l~i~G~g~-------~~~~~~~~~~~~~~~v~~-g---~~~~~~~~~~~~~adv~v~p 81 (166)
T 3qhp_A 32 DIVLLLKGKGP-------DEKKIKLLAQKLGVKAEF-G---FVNSNELLEILKTCTLYVHA 81 (166)
T ss_dssp GEEEEEECCST-------THHHHHHHHHHHTCEEEC-C---CCCHHHHHHHHTTCSEEEEC
T ss_pred CeEEEEEeCCc-------cHHHHHHHHHHcCCeEEE-e---ecCHHHHHHHHHhCCEEEEC
Confidence 45777776532 257788888888886554 3 47778888999999999864
No 64
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=25.45 E-value=46 Score=33.84 Aligned_cols=98 Identities=10% Similarity=-0.030 Sum_probs=68.5
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEech-hhhhhhhccC--CC
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHG-AGLTHSLFLR--PG 298 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHG-AgLtn~lF~~--pg 298 (404)
..+++|-||.=- ..--|..|+.+.|++.|.+++.+-+. ..++ ++++-+.+|++-|.++. ++..-+-+|. -|
T Consensus 218 ~~~~~VNIiG~~----~~~gD~~eik~lL~~~Gi~v~~~~~g-~~t~-~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~G 291 (492)
T 3u7q_A 218 STPYDVAIIGDY----NIGGDAWSSRILLEEMGLRCVAQWSG-DGSI-SEIELTPKVKLNLVHCYRSMNYISRHMEEKYG 291 (492)
T ss_dssp CCTTEEEEEEEC----CBTTTTHHHHHHHHHTTCEEEEEEET-TCCH-HHHHHGGGCSEEEESCHHHHHHHHHHHHHHHC
T ss_pred CCCCcEEEECCC----CChhhHHHHHHHHHHCCCeEEEEeCC-CCCH-HHHHhhhcCcEEEEEChHHHHHHHHHHHHHhC
Confidence 456678787632 12236789999999999999865443 3554 55677889999887753 5555555554 36
Q ss_pred cEEEEEeeCCcccccccchHhHHhhcCC
Q 044947 299 SVLMQVVPIGTQWLSTVYFEKPARVLGL 326 (404)
Q Consensus 299 s~vIEI~P~g~~w~~~~~y~~lA~~~gl 326 (404)
.-.+++-|+|++. ...++..+|+..|.
T Consensus 292 iP~i~~~p~G~~~-T~~~L~~ia~~~g~ 318 (492)
T 3u7q_A 292 IPWMEYNFFGPTK-TIESLRAIAAKFDE 318 (492)
T ss_dssp CCEEECCCSSHHH-HHHHHHHHHTTSCH
T ss_pred CceEecCccCHHH-HHHHHHHHHHHhCC
Confidence 7788888999653 35688899998884
No 65
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=25.19 E-value=93 Score=28.88 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCeEEEecCCCC---------C---CHHHHHHHHhhCCeEEEechhhhhhh---hccCCCcEEEEEeeCCc
Q 044947 245 EVKKAAEELGFDVTIFEPEES---------T---SLADSFRFIHSCHAMVGVHGAGLTHS---LFLRPGSVLMQVVPIGT 309 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~~---------~---~~~eq~~~~~~advlVGvHGAgLtn~---lF~~pgs~vIEI~P~g~ 309 (404)
.+++.++..|++|.+.+.... . +..+.-+++..||++|..-+.++.|. -.|+||+.+|.+.--..
T Consensus 171 ~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 171 TIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 345566666777766653210 0 01122345679999999888777543 24799999998852111
Q ss_pred ccccccchHhHHhhcCCeEEE
Q 044947 310 QWLSTVYFEKPARVLGLEYLE 330 (404)
Q Consensus 310 ~w~~~~~y~~lA~~~gl~Y~~ 330 (404)
...+ ..+...|+.+..
T Consensus 251 ----~~~~-~~a~~~G~~~i~ 266 (300)
T 2rir_A 251 ----GTDF-KYAEKQGIKALL 266 (300)
T ss_dssp ----SBCH-HHHHHHTCEEEE
T ss_pred ----CcCH-HHHHHCCCEEEE
Confidence 1224 677778887663
No 66
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=24.67 E-value=50 Score=31.49 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHH---HHHHHhhCC--------eEEEechhhhhhhhccCCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLAD---SFRFIHSCH--------AMVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~e---q~~~~~~ad--------vlVGvHGAgLtn~lF~~pg 298 (404)
..+.|.+.++++||+|.+.. +++..| .++-+..-| +++.-||-- |.++...+
T Consensus 95 Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~vv~ilsHG~~--~~i~g~D~ 157 (305)
T 1f1j_A 95 DAEALFKCFRSLGFDVIVYN---DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 157 (305)
T ss_dssp HHHHHHHHHHHHTEEEEEEE---SCCHHHHHHHHHHHHHSCGGGEEEEEEEEESCEET--TEEECSSS
T ss_pred HHHHHHHHHHHCCCEEEEec---CcCHHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC--CeEEecCC
Confidence 45577889999999999876 455444 444444333 455668853 66666554
No 67
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=24.32 E-value=82 Score=31.05 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHhhCCeEEEec---hhh----hhhhhc--cCCCcEEEEEe
Q 044947 272 FRFIHSCHAMVGVH---GAG----LTHSLF--LRPGSVLMQVV 305 (404)
Q Consensus 272 ~~~~~~advlVGvH---GAg----Ltn~lF--~~pgs~vIEI~ 305 (404)
.+.+..|||+|+.. |+. ++.-++ |+||+++|-+-
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 45778999999864 321 233333 89999999984
No 68
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=23.95 E-value=68 Score=32.25 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCeEEEecCCC------------CCCHHHHHHHHhhCCeEEEech-hhhhh---hhccCCCcEEEEEe
Q 044947 245 EVKKAAEELGFDVTIFEPEE------------STSLADSFRFIHSCHAMVGVHG-AGLTH---SLFLRPGSVLMQVV 305 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~~~------------~~~~~eq~~~~~~advlVGvHG-AgLtn---~lF~~pgs~vIEI~ 305 (404)
.+++.|+..|.+|++.+.+. ..++. +++..|||+|..-| .++-+ +--|++|+.||-+-
T Consensus 234 ~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Le---eal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 234 GCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLN---EVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMG 307 (435)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHH---HHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHH---HHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEec
Confidence 46777888899888876321 12333 35679999999755 23333 33489999998774
No 69
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=23.92 E-value=85 Score=29.20 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHH---HHHHhhC-----C---eEEEechhhhhhhhccCCCc
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADS---FRFIHSC-----H---AMVGVHGAGLTHSLFLRPGS 299 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq---~~~~~~a-----d---vlVGvHGAgLtn~lF~~pgs 299 (404)
..+.|.+.++++||+|.+.+ +++..|- ++-|++. | +++--||- -|.++...|.
T Consensus 50 D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~v~~ilSHG~--~g~i~g~D~~ 113 (271)
T 3h11_B 50 DAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGD--KGIIYGTDGQ 113 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEE--TTEEECTTSC
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEcCCc--CCEEEecCCC
Confidence 35567889999999999876 4555444 4444333 3 34555886 3777766663
No 70
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=23.85 E-value=1.7e+02 Score=26.34 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=56.1
Q ss_pred EEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCC--CCHHHH--------HHHHhhCCeEEEechhhhh----h
Q 044947 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEES--TSLADS--------FRFIHSCHAMVGVHGAGLT----H 291 (404)
Q Consensus 226 rv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~--~~~~eq--------~~~~~~advlVGvHGAgLt----n 291 (404)
++++|...+- +| .++..|.+.|++|.+.+.... ..+.++ -++ .++|++|..-+.++. .
T Consensus 118 ~v~iiG~G~~-g~------~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~ 189 (263)
T 2d5c_A 118 PALVLGAGGA-GR------AVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSAS 189 (263)
T ss_dssp CEEEECCSHH-HH------HHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred eEEEECCcHH-HH------HHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence 7889886442 12 356677778888877653210 011111 123 689999999988863 1
Q ss_pred ---hhccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 292 ---SLFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 292 ---~lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
.-++++|+.|+++. ++ .. ...+...|+..|.++.
T Consensus 190 ~l~~~~l~~g~~viD~~-~~--p~-~t~l~~~a~~~g~~~v 226 (263)
T 2d5c_A 190 PLPAELFPEEGAAVDLV-YR--PL-WTRFLREAKAKGLKVQ 226 (263)
T ss_dssp SSCGGGSCSSSEEEESC-CS--SS-SCHHHHHHHHTTCEEE
T ss_pred CCCHHHcCCCCEEEEee-cC--Cc-ccHHHHHHHHCcCEEE
Confidence 23578899999964 22 11 2235666777888765
No 71
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.78 E-value=34 Score=34.50 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=70.3
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEec-C-----------------CCCCCHHHHHHHHhhCCeEEE
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFE-P-----------------EESTSLADSFRFIHSCHAMVG 283 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~-~-----------------~~~~~~~eq~~~~~~advlVG 283 (404)
..+++|-+|. +.. -.--+..|+.+.|++.|.+++.+- . ..+.+ -++++-+.+|++-|.
T Consensus 167 ~~~~~VNii~--G~~-~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg~~-~~ei~~~~~A~~ni~ 242 (458)
T 3pdi_B 167 KRPRQVNVLC--SAN-LTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGGLS-VAELATAGQSVATLV 242 (458)
T ss_dssp CCSSEEEEEE--CTT-CCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCSBC-HHHHGGGSSCSCEEE
T ss_pred CCCCeEEEEe--CCC-CChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCCCC-HHHHHhhhhCcEEEE
Confidence 4566888883 110 123456789999999999998752 0 00123 566788888888888
Q ss_pred echhhhhhhhccCC--CcEEEEE-eeCCcccccccchHhHHhhcCCe
Q 044947 284 VHGAGLTHSLFLRP--GSVLMQV-VPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 284 vHGAgLtn~lF~~p--gs~vIEI-~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
++..+..-+-+|.. |.-.+++ .|+|++. ...+...+|+..|..
T Consensus 243 ~~~~~~~~A~~Le~~~GiP~~~~~~p~G~~~-T~~~l~~la~~~g~~ 288 (458)
T 3pdi_B 243 VGQSLAGAADALAERTGVPDRRFGMLYGLDA-VDAWLMALAEISGNP 288 (458)
T ss_dssp ESGGGHHHHHHHHHHSCCCEEEECCSCHHHH-HHHHHHHHHHHHSSC
T ss_pred ecHHHHHHHHHHHHHHCCCEEecCCCcCHHH-HHHHHHHHHHHHCCc
Confidence 88876555556643 7788887 6999653 356899999999974
No 72
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=23.59 E-value=2e+02 Score=26.81 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=59.7
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCC-eEEEecCCC-----------CCCHHHHHHHHhhCCeEEEechhhhhh
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGF-DVTIFEPEE-----------STSLADSFRFIHSCHAMVGVHGAGLTH 291 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf-~v~~~~~~~-----------~~~~~eq~~~~~~advlVGvHGAgLtn 291 (404)
.-+++++.-.+. -..++..|.+.|. +|.++.-.. ..++.+.-. + .+|+||..-.+||..
T Consensus 122 ~k~vlvlGaGGa-------araia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~ 192 (282)
T 3fbt_A 122 NNICVVLGSGGA-------ARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYP 192 (282)
T ss_dssp TSEEEEECSSTT-------HHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTT
T ss_pred CCEEEEECCcHH-------HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccC
Confidence 447788876554 2356677888888 777765220 011222112 3 899999888888742
Q ss_pred --------hhccCCCcEEEEEeeCCcccccccchHhHHhhcCCeEE
Q 044947 292 --------SLFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEYL 329 (404)
Q Consensus 292 --------~lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~Y~ 329 (404)
.-+++++.+|++++- ++ ..+.|-..|+..|.+..
T Consensus 193 ~~~~~pi~~~~l~~~~~v~DlvY---~P-~~T~ll~~A~~~G~~~~ 234 (282)
T 3fbt_A 193 KEGESPVDKEVVAKFSSAVDLIY---NP-VETLFLKYARESGVKAV 234 (282)
T ss_dssp STTCCSSCHHHHTTCSEEEESCC---SS-SSCHHHHHHHHTTCEEE
T ss_pred CCccCCCCHHHcCCCCEEEEEee---CC-CCCHHHHHHHHCcCeEe
Confidence 124678899999862 21 25778889999998754
No 73
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=23.25 E-value=47 Score=31.08 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=32.5
Q ss_pred hhCCeEEEechhhhhhh------hccCCCcEEEEEeeCCcccccccchHhHHhhcCCe
Q 044947 276 HSCHAMVGVHGAGLTHS------LFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLE 327 (404)
Q Consensus 276 ~~advlVGvHGAgLtn~------lF~~pgs~vIEI~P~g~~w~~~~~y~~lA~~~gl~ 327 (404)
..+|+||..-++|+..- =++++|++|+.+.-. . ..+.|-..|+..|++
T Consensus 186 ~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~---P-~~T~ll~~A~~~G~~ 239 (281)
T 3o8q_A 186 QSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYG---K-GYTVFNQWARQHGCA 239 (281)
T ss_dssp SCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCC---S-SCCHHHHHHHHTTCS
T ss_pred CCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCC---C-ccCHHHHHHHHCCCC
Confidence 57899998888886431 235677888888621 1 245677888999986
No 74
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=23.06 E-value=1.7e+02 Score=27.42 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=39.3
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhh
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLT 290 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLt 290 (404)
++-++.++.+... . .+++.+.|++.|+++.+.+.. . ..+..+|++|.+=|-|.-
T Consensus 28 ~~mki~iv~~~~~--~----~~~l~~~L~~~g~~v~~~~~~--~------~~~~~~DlvIvlGGDGT~ 81 (278)
T 1z0s_A 28 GGMRAAVVYKTDG--H----VKRIEEALKRLEVEVELFNQP--S------EELENFDFIVSVGGDGTI 81 (278)
T ss_dssp --CEEEEEESSST--T----HHHHHHHHHHTTCEEEEESSC--C------GGGGGSSEEEEEECHHHH
T ss_pred cceEEEEEeCCcH--H----HHHHHHHHHHCCCEEEEcccc--c------cccCCCCEEEEECCCHHH
Confidence 3457888888765 2 788999999999999875432 1 134589999999888854
No 75
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=23.03 E-value=77 Score=30.28 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHH---HHHHHhhCC--------eEEEechhhhhhhhccCCC
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLAD---SFRFIHSCH--------AMVGVHGAGLTHSLFLRPG 298 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~e---q~~~~~~ad--------vlVGvHGAgLtn~lF~~pg 298 (404)
..+.|.+.++++||+|.+.+ +++..| .++-|..-| +++.-||- -|.++...+
T Consensus 85 Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~f~~~dh~~~D~~vv~ilSHG~--~g~i~g~D~ 147 (310)
T 2nn3_C 85 DSDNLSKVLKTLGFKVTVFP---NLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGE--LGMLYAKDT 147 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHSSCGGGBSCEEEEEEEEEE--TTEEECSSC
T ss_pred HHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CCEEEecCC
Confidence 35567889999999999876 455444 444444433 34555885 577776665
No 76
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=23.00 E-value=29 Score=31.93 Aligned_cols=64 Identities=9% Similarity=0.138 Sum_probs=37.5
Q ss_pred CCCCEEEEEecC---------CC----CCccccCHHHHHHHHHHcCCeEEEecCCC-CCCHHHHHHHHhhCCeEEEec
Q 044947 222 HTKPKLVLVNRN---------AR----VGRTILNLREVKKAAEELGFDVTIFEPEE-STSLADSFRFIHSCHAMVGVH 285 (404)
Q Consensus 222 ~~~prv~~i~R~---------~~----~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~-~~~~~eq~~~~~~advlVGvH 285 (404)
.++-||+++.|. +. .+.---....+.++|++.|++|..+.... ..+|.+..+.+...|+||=..
T Consensus 8 ~~~~~vll~~~sw~~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 8 QKKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISD 85 (256)
T ss_dssp ---CEEEEEECEEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEES
T ss_pred hhhcEEEEecCccceeeEeecccccccccCccccHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeC
Confidence 345699999887 11 00122245678889999999999873100 002222245788999999554
No 77
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=22.77 E-value=75 Score=29.72 Aligned_cols=53 Identities=15% Similarity=0.377 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHH---HHHhhC-----C---eEEEechhhhhhhhccCCCc
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSF---RFIHSC-----H---AMVGVHGAGLTHSLFLRPGS 299 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~---~~~~~a-----d---vlVGvHGAgLtn~lF~~pgs 299 (404)
..+.|.+.++++||+|.+.+ +++..|-. +-+..- | +++.-||-. +.++...|.
T Consensus 47 D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~vv~ilSHG~~--g~i~g~D~~ 110 (278)
T 3od5_A 47 DRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEG--NHIYAYDAK 110 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTBSCEEEEEESCEET--TEEECSSSE
T ss_pred HHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHhhcccCCCEEEEEEECCCCC--CEEEEeCCe
Confidence 45578889999999999876 46555444 434333 3 345558863 777766654
No 78
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.66 E-value=1.4e+02 Score=24.45 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhh--CCeEEEech
Q 044947 224 KPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHS--CHAMVGVHG 286 (404)
Q Consensus 224 ~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~--advlVGvHG 286 (404)
+|++++..=.+- -.=+...=+...++..||+|+.+.. ..+.++.++.... +|+ ||+-.
T Consensus 3 ~~~vvla~~~~d--~HdiG~~~v~~~l~~~G~~Vi~lG~--~~p~e~~v~~a~~~~~d~-v~lS~ 62 (137)
T 1ccw_A 3 KKTIVLGVIGSD--CHAVGNKILDHAFTNAGFNVVNIGV--LSPQELFIKAAIETKADA-ILVSS 62 (137)
T ss_dssp CCEEEEEEETTC--CCCHHHHHHHHHHHHTTCEEEEEEE--EECHHHHHHHHHHHTCSE-EEEEE
T ss_pred CCEEEEEeCCCc--hhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCE-EEEEe
Confidence 456655543333 2333344456688889999997765 4888888888764 554 34433
No 79
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.55 E-value=77 Score=25.02 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=29.0
Q ss_pred EEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEE
Q 044947 227 LVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMV 282 (404)
Q Consensus 227 v~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlV 282 (404)
++|-|+.++. +++. +.+.+.+++.|+++..++.. +.+. ..+.++|.+|
T Consensus 4 iiy~S~tGnT-~~~a--~~i~~~l~~~g~~v~~~~~~-~~~~----~~l~~~d~vi 51 (137)
T 2fz5_A 4 IVYWSGTGNT-EAMA--NEIEAAVKAAGADVESVRFE-DTNV----DDVASKDVIL 51 (137)
T ss_dssp EEECCSSSHH-HHHH--HHHHHHHHHTTCCEEEEETT-SCCH----HHHHTCSEEE
T ss_pred EEEECCCChH-HHHH--HHHHHHHHhCCCeEEEEEcc-cCCH----HHHhcCCEEE
Confidence 5566665542 4444 24556666679998887765 3443 2367788755
No 80
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=22.32 E-value=1.6e+02 Score=25.64 Aligned_cols=60 Identities=10% Similarity=0.220 Sum_probs=39.1
Q ss_pred CCCCEEEEEecCCCCCccccCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHhh-----CCeEEEech
Q 044947 222 HTKPKLVLVNRNARVGRTILNLREVKKAAEELG--FDVTIFEPEESTSLADSFRFIHS-----CHAMVGVHG 286 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~g--f~v~~~~~~~~~~~~eq~~~~~~-----advlVGvHG 286 (404)
.-+|++.+|.=..+ -+-=-+|..+.|+++| ||+.+... +.+..+..++..+ ++|+|++=|
T Consensus 9 ~~~~~V~IimGS~S---D~~v~~~a~~~L~~~Gi~~dv~V~Sa--HR~p~~l~~~~~~a~~~g~~ViIa~AG 75 (170)
T 1xmp_A 9 HMKSLVGVIMGSTS---DWETMKYACDILDELNIPYEKKVVSA--HRTPDYMFEYAETARERGLKVIIAGAG 75 (170)
T ss_dssp --CCSEEEEESSGG---GHHHHHHHHHHHHHTTCCEEEEECCT--TTSHHHHHHHHHHTTTTTCCEEEEEEE
T ss_pred cCCCcEEEEECcHH---HHHHHHHHHHHHHHcCCCEEEEEEec--cCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45888999886654 2333446777788886 56667654 4666666666654 789888655
No 81
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=21.84 E-value=3.3e+02 Score=26.14 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=53.9
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCC---CCCCHHHHH-----------HHHhhCCeEEEechhhhhhhhccCCCcEEEE
Q 044947 238 RTILNLREVKKAAEELGFDVTIFEPE---ESTSLADSF-----------RFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQ 303 (404)
Q Consensus 238 R~i~Ne~ev~~~l~~~gf~v~~~~~~---~~~~~~eq~-----------~~~~~advlVGvHGAgLtn~lF~~pgs~vIE 303 (404)
||+-=-.+-++.|.+.|++|.+-... ...+=.|-. +.+.+||+|+++-----.-...+.+|..++=
T Consensus 14 ~Rv~ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~vk~p~~~e~~~l~~~~~l~~ 93 (377)
T 2vhw_A 14 FRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILFT 93 (377)
T ss_dssp CCCSCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEECSSCCCGGGGGGCCTTCEEEE
T ss_pred cccCcCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEEeCCCChHHHhhcCCCCEEEE
Confidence 55555557777888899999763211 123322222 4667899999887554455667788877665
Q ss_pred EeeCCcccccccchHhHHhhcCCeEEEEE
Q 044947 304 VVPIGTQWLSTVYFEKPARVLGLEYLEYK 332 (404)
Q Consensus 304 I~P~g~~w~~~~~y~~lA~~~gl~Y~~y~ 332 (404)
..-.+. ....-..+...|++.+.|+
T Consensus 94 ~~~~~~----~~~~l~~l~~~gi~~ia~e 118 (377)
T 2vhw_A 94 FLHLAA----SRACTDALLDSGTTSIAYE 118 (377)
T ss_dssp CCCGGG----CHHHHHHHHHHTCEEEEGG
T ss_pred EecccC----CHHHHHHHHHcCCeEEEee
Confidence 432221 1222233455688888763
No 82
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=21.59 E-value=51 Score=28.25 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=44.6
Q ss_pred CCCCEEEEEecCCC---CCccccCHHHHHHHHHHcCCeEEEe--cCCCCCCHHHHHHHH-h-hCCeEEEechhhhhh
Q 044947 222 HTKPKLVLVNRNAR---VGRTILNLREVKKAAEELGFDVTIF--EPEESTSLADSFRFI-H-SCHAMVGVHGAGLTH 291 (404)
Q Consensus 222 ~~~prv~~i~R~~~---~~R~i~Ne~ev~~~l~~~gf~v~~~--~~~~~~~~~eq~~~~-~-~advlVGvHGAgLtn 291 (404)
-++||+-+|+=.+. ....=.|-.-+.+.|++.|++++.. -++. -.+.+.++.. . .+|+||-.=|.|.+-
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 35778888775442 1123346667889999999997532 2443 5566666554 3 799999999998765
No 83
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.56 E-value=62 Score=27.71 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCCCEEEEEecCCCCCcccc--CHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHH-h--hCCeEEEechhhhhh
Q 044947 222 HTKPKLVLVNRNARVGRTIL--NLREVKKAAEELGFDVTIFE--PEESTSLADSFRFI-H--SCHAMVGVHGAGLTH 291 (404)
Q Consensus 222 ~~~prv~~i~R~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~-~--~advlVGvHGAgLtn 291 (404)
.++||+-+|+=.+.. -++. |-.-+.+.|++.|+++.... ++..-.+.+.++.. . .+|+||-.=|.|.+.
T Consensus 11 ~~~~rv~Ii~tGdEl-g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 86 (169)
T 1y5e_A 11 PKEVRCKIVTISDTR-TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITK 86 (169)
T ss_dssp -CCCEEEEEEECSSC-CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSST
T ss_pred ccCCEEEEEEEcCcc-CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 357788888754432 2444 45567889999999886432 33234566776654 3 699999999998764
No 84
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=21.41 E-value=55 Score=28.82 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCCCEEEEEecCCC--CCccccCHHHHHHHHHHcCCeEEEec--CCCCCCHHHHHHHH--hhCCeEEEechhhhhhhhcc
Q 044947 222 HTKPKLVLVNRNAR--VGRTILNLREVKKAAEELGFDVTIFE--PEESTSLADSFRFI--HSCHAMVGVHGAGLTHSLFL 295 (404)
Q Consensus 222 ~~~prv~~i~R~~~--~~R~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~--~~advlVGvHGAgLtn~lF~ 295 (404)
.++||+.+|+=.+. .++.=.|-.-+.+.|++.|+++.... ++..-.+.+.++.. ..+|+||-.=|.|.+--=+.
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~t 107 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVT 107 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCH
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcccH
Confidence 57889988875542 12333466778899999999986432 33234566666554 47999999999998764333
No 85
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=21.34 E-value=1.2e+02 Score=26.49 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCeEEEecC-----CCCCCHHHHHHHHhhCCeEEEe
Q 044947 245 EVKKAAEELGFDVTIFEP-----EESTSLADSFRFIHSCHAMVGV 284 (404)
Q Consensus 245 ev~~~l~~~gf~v~~~~~-----~~~~~~~eq~~~~~~advlVGv 284 (404)
.+++.+++.|.+|.+.+. +...++.+..+.+..||+||=.
T Consensus 21 ~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~ 65 (192)
T 3f2v_A 21 HWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ 65 (192)
T ss_dssp HHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE
Confidence 567777778887777653 2246788889999999998743
No 86
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=21.21 E-value=1.3e+02 Score=28.42 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 044947 242 NLREVKKAAEELGFDVTIFEPEESTSLADSFRFI 275 (404)
Q Consensus 242 Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~ 275 (404)
..+.|.+.++++||+|.+.+ +++..|-.+.+
T Consensus 83 Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~l 113 (302)
T 3e4c_A 83 DITGMTMLLQNLGYSVDVKK---NLTASDMTTEL 113 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEee---CCCHHHHHHHH
Confidence 35567889999999999876 46655544443
No 87
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.59 E-value=69 Score=18.94 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.6
Q ss_pred CCccccCHHHHHHHHHHc
Q 044947 236 VGRTILNLREVKKAAEEL 253 (404)
Q Consensus 236 ~~R~i~Ne~ev~~~l~~~ 253 (404)
.+|.+.||.|+.+.++++
T Consensus 8 kgrtfrnekelrdfiekf 25 (28)
T 1fme_A 8 KGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSCEECCHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHh
Confidence 459999999999998875
Done!