Query 044951
Match_columns 375
No_of_seqs 202 out of 1610
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 4.6E-06 1.6E-10 64.8 11.9 71 146-216 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.3 2.8E-06 9.5E-11 68.6 8.2 70 146-215 34-104 (137)
3 2i68_A Protein EMRE; transmemb 98.1 4.7E-06 1.6E-10 67.2 7.0 68 305-372 35-104 (137)
4 3b5d_A Multidrug transporter E 97.9 4.4E-05 1.5E-09 59.2 8.1 67 307-373 37-105 (110)
5 4dve_A Biotin transporter BIOY 5.5 1.2E+03 0.041 19.0 9.3 88 140-232 15-110 (198)
6 4ev6_A Magnesium transport pro 4.3 7.3E+02 0.025 21.9 4.2 17 329-345 283-299 (339)
7 2l2t_A Receptor tyrosine-prote 4.0 6.2E+02 0.021 15.3 2.3 8 363-370 27-34 (44)
8 2h3o_A MERF; membrane protein, 4.0 89 0.003 20.6 -1.7 9 365-373 45-53 (61)
9 3aqp_A Probable secdf protein- 3.6 1.7E+03 0.058 22.2 6.6 28 336-363 308-335 (741)
10 3tds_E Formate/nitrite transpo 3.5 1.9E+03 0.066 18.6 12.1 191 170-375 36-260 (268)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.39 E-value=4.6e-06 Score=64.82 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhHhhcccchhHHHHH-HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhHhhcccc
Q 044951 146 IPVNLIFIGMLVSGMYSLKYINIAMVTIL-KNMTNILTAVGELYMFRKRQNQKVWTAMFLMIISAVSGSITD 216 (375)
Q Consensus 146 ~~~~~~~~~~~~~~~~al~~~~vs~~~il-~~~~pvfv~l~~~~~~~~~~~~~~~~~l~l~~~Gv~l~~~~~ 216 (375)
....+++.+..++...+++++|++.+..+ ..+.|+++.+.+.+++||++++.+++++.++++|++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44445678888999999999999999888 899999999999999999999999999999999999886644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.26 E-value=2.8e-06 Score=68.55 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhHhhcccchhHHHHH-HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhHhhccc
Q 044951 146 IPVNLIFIGMLVSGMYSLKYINIAMVTIL-KNMTNILTAVGELYMFRKRQNQKVWTAMFLMIISAVSGSIT 215 (375)
Q Consensus 146 ~~~~~~~~~~~~~~~~al~~~~vs~~~il-~~~~pvfv~l~~~~~~~~~~~~~~~~~l~l~~~Gv~l~~~~ 215 (375)
+...+++.+..++.+.+++++|++.+..+ .++.|++++++++++++|++++.++++++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34446678889999999999999988877 89999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.13 E-value=4.7e-06 Score=67.23 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHHH-HHhhccCchhHhHH-HhhhhHHHHHhHHhhccCcCccchhhHHHHHHHhhHhhhhc
Q 044951 305 SGFLGLAISFTSM-WFLQQTGPTTYSLV-GSLNKIPISLAGLVLFNVPLSVPNMFSILFGLFAGIFFARA 372 (375)
Q Consensus 305 ~~~~~~~~~~~~~-~~l~~~s~~t~si~-~~~~~v~~i~~~~~~f~e~~t~~~~iG~~l~l~G~~ly~~~ 372 (375)
.+++++.+.+..+ +.+++.++.++..+ ..+.|+.++++|+++|||++++.+++|+++++.|+++.+..
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444443 78999999988777 89999999999999999999999999999999999988764
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.88 E-value=4.4e-05 Score=59.21 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=54.9
Q ss_pred HHHHHHHHHHH-HHhhccCchhHhHH-HhhhhHHHHHhHHhhccCcCccchhhHHHHHHHhhHhhhhcc
Q 044951 307 FLGLAISFTSM-WFLQQTGPTTYSLV-GSLNKIPISLAGLVLFNVPLSVPNMFSILFGLFAGIFFARAK 373 (375)
Q Consensus 307 ~~~~~~~~~~~-~~l~~~s~~t~si~-~~~~~v~~i~~~~~~f~e~~t~~~~iG~~l~l~G~~ly~~~k 373 (375)
++++...+..+ +.+++.+..++... ..+.|+.+++.|+++|||+++..+++|+++++.|++..+..+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444433 67888888888776 799999999999999999999999999999999999887643
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=5.47 E-value=1.2e+03 Score=19.03 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh---hcccchhHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhHhhcccc
Q 044951 140 KLIKLWIPVNLIFIGMLVSGMYS---LKYINIAMVTILKNMTNILTAVGELYMFRKRQNQKVWTAMFLMIISAVSGSITD 216 (375)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~a---l~~~~vs~~~il~~~~pvfv~l~~~~~~~~~~~~~~~~~l~l~~~Gv~l~~~~~ 216 (375)
+..|.+..++++.++...+...+ +-..|+++ .++.+.+++.+.++..++=.....+-+++..+|.=+.+.+.
T Consensus 15 ~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~ 89 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGN 89 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCC
Confidence 45777777787777777766543 33334443 36777777777555445444455555666666654444332
Q ss_pred ccc-----chhhHHHHHHHHH
Q 044951 217 LSF-----DTKGYAWQIVNCI 232 (375)
Q Consensus 217 ~~~-----~~~G~~~~l~s~~ 232 (375)
... +..|++++..-+.
T Consensus 90 gG~~~l~gPTgGYLiGF~~aA 110 (198)
T 4dve_A 90 GGAASFLGPSGGYRIAWLFTP 110 (198)
T ss_dssp CCSGGGGSTTHHHHHHHHHHH
T ss_pred CchhHHhcchhHHHHHHHHHH
Confidence 221 2458877665443
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=4.31 E-value=7.3e+02 Score=21.92 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=8.0
Q ss_pred hHHHhhhhHHHHHhHHh
Q 044951 329 SLVGSLNKIPISLAGLV 345 (375)
Q Consensus 329 si~~~~~~v~~i~~~~~ 345 (375)
+++..+--+.+.+.|+.
T Consensus 283 Tiit~IflP~T~IaGiy 299 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIY 299 (339)
T ss_dssp HHHHHHSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33334444555555543
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=4.04 E-value=6.2e+02 Score=15.32 Aligned_cols=8 Identities=0% Similarity=-0.102 Sum_probs=2.9
Q ss_pred HHhhHhhh
Q 044951 363 LFAGIFFA 370 (375)
Q Consensus 363 l~G~~ly~ 370 (375)
..+.++|-
T Consensus 27 ~~~~~~~~ 34 (44)
T 2l2t_A 27 GLTFAVYV 34 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333343
No 8
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=4.00 E-value=89 Score=20.64 Aligned_cols=9 Identities=11% Similarity=0.154 Sum_probs=5.0
Q ss_pred hhHhhhhcc
Q 044951 365 AGIFFARAK 373 (375)
Q Consensus 365 G~~ly~~~k 373 (375)
|..+|...|
T Consensus 45 gl~~Y~~~r 53 (61)
T 2h3o_A 45 GLTIYAIQR 53 (61)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566665544
No 9
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=3.56 E-value=1.7e+03 Score=22.18 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=18.3
Q ss_pred hHHHHHhHHhhccCcCccchhhHHHHHH
Q 044951 336 KIPISLAGLVLFNVPLSVPNMFSILFGL 363 (375)
Q Consensus 336 ~v~~i~~~~~~f~e~~t~~~~iG~~l~l 363 (375)
.++.++....++|.+++...+.|.++.+
T Consensus 308 ~i~~~~~~l~l~g~~l~l~~i~glil~i 335 (741)
T 3aqp_A 308 TSALILGLLSGLGATLTLPGIAGLVLTL 335 (741)
T ss_dssp HHHHHHHHHHHHCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3444444455668888888887776665
No 10
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=3.47 E-value=1.9e+03 Score=18.65 Aligned_cols=191 Identities=10% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044951 170 MVTILKNMTNILTAVGELYMFRKRQNQKVWTAMFLMIISAVSGSITDLSFDTKGYAWQIVNCILTASYSLTLRRVMDKAK 249 (375)
Q Consensus 170 ~~~il~~~~pvfv~l~~~~~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 249 (375)
++.+..+..-++......-+-.+.++..+.++-+..-+|.+++.....+.= -+...+....++.||..-+.-
T Consensus 36 ~AG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~~Gl~lVvl~g~eLf--------Tgn~l~~~~~~~~~~~s~~~~ 107 (268)
T 3tds_E 36 FAGLYVGIGILLIFTIGGLLTDAGSPMTKIVMGLSFAIALSLVIMTGTELF--------TGNNMVMSAGMLNKGVSIKDT 107 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHTCTHHHHHHHHHTCCCH--------HHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHhCcccc--------ccchHHHHHHHHcCCCcHHHH
Q ss_pred hhccCCCCCchhHHHHHhhhHHHHHHHHHHHhhhh------hHhHhcCcchhhHHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 044951 250 QATRSGSLNEVSMVLLNNLLSLPFAMFLILIFDEW------RYVMNTGVIELPMFWVAATASGFLGLAISFTSMWFLQQT 323 (375)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 323 (375)
+.-|...+..|+.+..+...+....+.. +...+........-|.-....|+++=.+--...|.....
T Consensus 108 -------lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~~ 180 (268)
T 3tds_E 108 -------SKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRT 180 (268)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred CchhHhHHHhhhhHHHHHhH--------------HhhccC--------------cCccchhhHHHHHHHhhHhhhhcccC
Q 044951 324 GPTTYSLVGSLNKIPISLAG--------------LVLFNV--------------PLSVPNMFSILFGLFAGIFFARAKMS 375 (375)
Q Consensus 324 s~~t~si~~~~~~v~~i~~~--------------~~~f~e--------------~~t~~~~iG~~l~l~G~~ly~~~k~~ 375 (375)
.+...-+....-|+...+.+ -++.+. +.+.-+++|..+.+....+|.+.|.+
T Consensus 181 k~~~gKi~~i~~pi~~Fv~~GfEH~VANm~~~~~~~~~~~~~~~t~~~~~~nlipvtlGNiiGG~~fvgl~y~~~~~~~~ 260 (268)
T 3tds_E 181 NSDTAKIIMIFLCLFAIITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEKL 260 (268)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCCC-
T ss_pred CchhhHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Done!