Query 044951
Match_columns 375
No_of_seqs 202 out of 1610
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 14:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044951.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044951hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 13.1 84 0.0061 15.2 2.8 17 222-238 3-19 (27)
2 d1pv7a_ f.38.1.2 (A:) Lactose 8.4 4.3E+02 0.031 20.4 13.8 21 192-212 284-304 (417)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 7.2 5.9E+02 0.043 21.0 22.1 55 176-232 236-291 (383)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.6 6.1E+02 0.044 19.6 7.8 53 145-201 5-57 (248)
5 d2iuba2 f.17.3.1 (A:286-349) M 3.8 2.8E+02 0.02 16.3 2.3 11 353-363 42-52 (64)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 2.5 5E+02 0.036 13.5 2.7 17 221-237 18-34 (37)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 2.4 4.1E+02 0.03 13.6 1.5 10 361-370 16-25 (34)
8 d1txga1 a.100.1.6 (A:181-335) 2.3 5E+02 0.036 18.3 2.7 21 326-346 3-23 (155)
9 d1m9za_ g.7.1.3 (A:) TGF-beta 2.3 5.7E+02 0.041 16.9 2.6 18 2-19 45-62 (105)
10 d1ks6a_ g.7.1.3 (A:) TGF-beta 2.2 4.4E+02 0.032 17.5 1.9 18 2-19 48-65 (107)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.07 E-value=84 Score=15.25 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 044951 222 KGYAWQIVNCILTASYS 238 (375)
Q Consensus 222 ~G~~~~l~s~~~~a~~~ 238 (375)
.|.+.+-++.+.+|.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777778888888873
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.35 E-value=4.3e+02 Score=20.43 Aligned_cols=21 Identities=19% Similarity=-0.094 Sum_probs=10.7
Q ss_pred ccccHHHHHHHHHHHHHhHhh
Q 044951 192 KRQNQKVWTAMFLMIISAVSG 212 (375)
Q Consensus 192 ~~~~~~~~~~l~l~~~Gv~l~ 212 (375)
+|...++...+.....++...
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~ 304 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHhhh
Confidence 455566555554444444433
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.16 E-value=5.9e+02 Score=21.04 Aligned_cols=55 Identities=11% Similarity=-0.071 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhHhhcccccccchh-hHHHHHHHHH
Q 044951 176 NMTNILTAVGELYMFRKRQNQKVWTAMFLMIISAVSGSITDLSFDTK-GYAWQIVNCI 232 (375)
Q Consensus 176 ~~~pvfv~l~~~~~~~~~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~-G~~~~l~s~~ 232 (375)
+..-.++.++...+.++|++......- .++|.+-++-+..-.++. .++.++++++
T Consensus 236 ~a~~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~ 291 (383)
T d1u7ga_ 236 TAAAILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGL 291 (383)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccH
Confidence 333344444444556677777665443 345655554443233333 3555544443
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.56 E-value=6.1e+02 Score=19.56 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Q 044951 145 WIPVNLIFIGMLVSGMYSLKYINIAMVTILKNMTNILTAVGELYMFRKRQNQKVWTA 201 (375)
Q Consensus 145 ~~~~~~~~~~~~~~~~~al~~~~vs~~~il~~~~pvfv~l~~~~~~~~~~~~~~~~~ 201 (375)
+..++++.++..+.....+..-+..++. ...+.+.+..++++.+|.-+.+++.
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 5566666665555555555444444443 3344456666777777766666543
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.77 E-value=2.8e+02 Score=16.31 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=4.3
Q ss_pred cchhhHHHHHH
Q 044951 353 VPNMFSILFGL 363 (375)
Q Consensus 353 ~~~~iG~~l~l 363 (375)
..-.+|+.+++
T Consensus 42 ~~~~~~~~~~~ 52 (64)
T d2iuba2 42 YPVVLAVMGVI 52 (64)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.45 E-value=5e+02 Score=13.47 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 044951 221 TKGYAWQIVNCILTASY 237 (375)
Q Consensus 221 ~~G~~~~l~s~~~~a~~ 237 (375)
.+|.++...-++.++.|
T Consensus 18 y~GlLlifvl~vLFssY 34 (37)
T d2axtl1 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666555555544
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.39 E-value=4.1e+02 Score=13.62 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=5.8
Q ss_pred HHHHhhHhhh
Q 044951 361 FGLFAGIFFA 370 (375)
Q Consensus 361 l~l~G~~ly~ 370 (375)
+.++|++.|.
T Consensus 16 i~~vG~FfYG 25 (34)
T d2axtj1 16 IVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHH
T ss_pred Hhheeeeeee
Confidence 4456666663
No 8
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.33 E-value=5e+02 Score=18.26 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=16.1
Q ss_pred hhHhHHHhhhhHHHHHhHHhh
Q 044951 326 TTYSLVGSLNKIPISLAGLVL 346 (375)
Q Consensus 326 ~t~si~~~~~~v~~i~~~~~~ 346 (375)
..+.+++.+|.++++..|++-
T Consensus 3 iGvEi~galKNi~Aia~Gi~~ 23 (155)
T d1txga1 3 IGTEITSALKNVYSIAIAWIR 23 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888763
No 9
>d1m9za_ g.7.1.3 (A:) TGF-beta type II receptor extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.26 E-value=5.7e+02 Score=16.88 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=12.1
Q ss_pred CCCcceEEecCCCccccC
Q 044951 2 SNFKLDVVIHGDSEEAAA 19 (375)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (375)
+|..+|+++|.+...++-
T Consensus 45 ~nitleT~CHdP~~~l~g 62 (105)
T d1m9za_ 45 ENITLETVCHDPKLPYHD 62 (105)
T ss_dssp SCEEEEEEEECTTSCBTT
T ss_pred CCceEEEEEcCCCceecc
Confidence 356788899987744433
No 10
>d1ks6a_ g.7.1.3 (A:) TGF-beta type II receptor extracellular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.20 E-value=4.4e+02 Score=17.54 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=11.9
Q ss_pred CCCcceEEecCCCccccC
Q 044951 2 SNFKLDVVIHGDSEEAAA 19 (375)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (375)
+|..+|+++|++...++-
T Consensus 48 ~nitleT~CHdP~~~l~g 65 (107)
T d1ks6a_ 48 ENVTLETICHDPQKRLYG 65 (107)
T ss_dssp TEEEEEEECCCTTSCBTT
T ss_pred CCeeEEEEEcCCCceecc
Confidence 356678888887744443
Done!