BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044953
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
Length = 691
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 115/216 (53%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K + +P VIEPSFG+GRI+Y ++EH+F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 540 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 572
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR + E S+++ + +G TW DV + YP
Sbjct: 635 RDSMRQIRAEISELPSIVQDLANGNITWADVEARYP 670
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Atp)
pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ampcpp
pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Glycine And Atp
pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Gly-Amp Analog
pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Ap4a)
Length = 693
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 115/216 (53%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K + +P VIEPSFG+GRI+Y ++EH+F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 540 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 572
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR + E S+++ + +G TW DV + YP
Sbjct: 635 RDSMRQIRAEISELPSIVQDLANGNITWADVEARYP 670
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
Mutant
Length = 691
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 115/216 (53%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K + +P VIEPSFG+GRI+Y ++EH+F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 540 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 572
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR + E S+++ + +G TW DV + YP
Sbjct: 635 RDSMRQIRAEISELPSIVQDLANGNITWADVEARYP 670
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase
Mutant
Length = 693
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 114/216 (52%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K + +P VIEPSF +GRI+Y ++EH+F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFRLGRIMYTVFEHTF 539
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 540 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 572
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR + E S+++ + +G TW DV + YP
Sbjct: 635 RDSMRQIRAEISELPSIVQDLANGNITWADVEARYP 670
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
Length = 505
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 22/193 (11%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+G+ +E L Q AHYA D HG +E GIA R+ +DL +HTK E
Sbjct: 267 MGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEAL 326
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
+ V+ LA+ + E + F+P VIEPS G+
Sbjct: 327 GITARVLRNEHSTQRLAY---------------------RDPETGKWFVPYVIEPSAGVD 365
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVI 186
R + L +F G+E++ V + P +APIK V PL ++ +I + +
Sbjct: 366 RGVLALLAEAFTREELPNGEERI-VLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARL 424
Query: 187 KAVTDGQTTWEDV 199
A+ G+ +ED
Sbjct: 425 LALGLGRVLYEDT 437
>pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
pdb|1GGM|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
pdb|1B76|A Chain A, Glycyl-trna Synthetase From Thermus Thermophilus Complexed
With Atp
pdb|1B76|B Chain B, Glycyl-trna Synthetase From Thermus Thermophilus Complexed
With Atp
Length = 442
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+G+ +E L Q AHYA D HG +E GIA R+ +DL +HTK E
Sbjct: 204 MGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEAL 263
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
+ V+ LA+ + E + F+P VIEPS G+
Sbjct: 264 GITARVLRNEHSTQRLAY---------------------RDPETGKWFVPYVIEPSAGVD 302
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVI 186
R + L +F TR E+ V + P +APIK V PL ++ +I + +
Sbjct: 303 RGVLALLAEAF-TREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARL 361
Query: 187 KAVTDGQTTWEDV 199
A+ G+ +ED
Sbjct: 362 LALGLGRVLYEDT 374
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 15 RFRQHLANEMAHYAANCWDAE---IECSHGWIECVGIADRSTYDLHAHTKFSETREVEKL 71
R R HL EMA Y +CW IE ++G R+ + ++TR + +
Sbjct: 168 RVRHHLLEEMADYGYDCWGRSGRVIEDAYG---------RNGSPMQMMANLTKTRPIRHI 218
Query: 72 VIAPVKKE 79
P + E
Sbjct: 219 FSQPTEPE 226
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 15 RFRQHLANEMAHYAANCWDAE---IECSHGWIECVGIADRSTYDLHAHTKFSETREVEKL 71
R R HL EMA Y +CW IE ++G R+ + ++TR + +
Sbjct: 171 RVRHHLLEEMADYGYDCWGRSGRVIEDAYG---------RNGSPMQMMANLTKTRPIRHI 221
Query: 72 VIAPVKKE 79
P + E
Sbjct: 222 FSQPTEPE 229
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1CI7|B Chain B, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1F28|A Chain A, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|B Chain B, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|C Chain C, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|D Chain D, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
Length = 297
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 140 RPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQ-IRVSVDEAASVIKAVTD 191
RP + G L+VF PL ++ FPL +K IR ++E I+ TD
Sbjct: 23 RPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETD 75
>pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
Length = 392
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 150 NVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSE 209
+VFR+P + P+K + + D + + V V++ +DG W +VW ++P +E
Sbjct: 18 HVFRYP-VSTPVKTSFGTMHD-RPAVLVEVED--------SDGAVGWGEVWCNFPACGAE 67
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 154 FPPLVAPIKCTVFPL-------RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWS 201
PPL+API + P+ ++S Q+ V+E A +K+ + + +D +S
Sbjct: 293 LPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFS 347
>pdb|4FJ6|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|B Chain B, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|C Chain C, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|D Chain D, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
Length = 523
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 143 KAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASV-IKAVTDGQTTWE 197
+AGD+ FR P LV T+ + D + V + E + + TD TWE
Sbjct: 172 QAGDDGSAAFRIPGLVTTNNGTLLGVYDIRYNSSVDLQEKIDIGVSRSTDKGQTWE 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,518,783
Number of Sequences: 62578
Number of extensions: 247900
Number of successful extensions: 617
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 19
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)