BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044953
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23627|SYGM1_ARATH Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana
GN=GLYRS-1 PE=2 SV=1
Length = 729
Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/213 (68%), Positives = 156/213 (73%), Gaps = 45/213 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YLFL LGIDKERLRFRQHLANEMAHYAA+CWDAEIE S+GWIECVGIADRS YDL AH+
Sbjct: 411 YLFLTRLGIDKERLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGIADRSAYDLRAHS 470
Query: 61 -----------KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEAL-------------- 95
KF+E +EVEKLVI PVKKELGLAFKG+QKNVVE+L
Sbjct: 471 DKSGTPLVAEEKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLEAMNEEEAMEMKAT 530
Query: 96 --------------------EKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEH 135
+KNM+ ISKEKKKEHQRVF P VIEPSFGIGRIIYCLYEH
Sbjct: 531 LESKGEVEFYVCTLKKSVNIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEH 590
Query: 136 SFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
F TRPSKAGDEQLN+FRFPPLVAPIKCTVFPL
Sbjct: 591 CFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPL 623
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 39/44 (88%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSESAD 212
RDSKDQ+RV++ EAASV+ +V++G+ TW+DVW+++PHH S +AD
Sbjct: 685 RDSKDQVRVTLKEAASVVSSVSEGKMTWQDVWATFPHHSSAAAD 728
>sp|P38088|SYG_YEAST Glycine--tRNA ligase 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GRS1 PE=1 SV=3
Length = 690
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 129/232 (55%), Gaps = 49/232 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
Y FL +G+D+ +LRFRQH+ANEMAHYAA+CWD E++ S+GWIECVG ADRS YDL H+
Sbjct: 367 YQFLMKIGVDESKLRFRQHMANEMAHYAADCWDGELKTSYGWIECVGCADRSAYDLTVHS 426
Query: 61 KFSETR-----------EVEKLVIAPVKKELGLAFK------------------GSQKNV 91
K ++ + EV K I KK G F+ S+ +
Sbjct: 427 KKTKEKLVVRQKLDNPIEVTKWEIDLTKKLFGPKFRKDAPKVESHLLNMSQDDLASKAEL 486
Query: 92 VEA----------------LEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEH 135
++A L+ ++ I + K EH R ++P VIEPSFGIGRIIY ++EH
Sbjct: 487 LKANGKFTIKVDGVDGEVELDDKLVKIEQRTKVEHVREYVPSVIEPSFGIGRIIYSVFEH 546
Query: 136 SFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIK 187
SF+ RP D +V FPPLVAP K + PL + KD + V+ E A +++
Sbjct: 547 SFWNRPE---DNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTT-EVAKILR 594
>sp|Q10179|SYG_SCHPO Putative glycine--tRNA ligase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=grs1 PE=3 SV=1
Length = 652
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 114/210 (54%), Gaps = 46/210 (21%)
Query: 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTK 61
LFL +GID R+RFRQH++NEMAHYA +CWDAEI+CS+GWIECVG ADRS YDL H+K
Sbjct: 338 LFLEKIGIDMNRVRFRQHMSNEMAHYACDCWDAEIQCSYGWIECVGCADRSAYDLSVHSK 397
Query: 62 FSETREVEKLVIAPV-----------KKELGLAFKGSQKNVVEAL--------------- 95
++T V + + +K+ G FK K V EA+
Sbjct: 398 ATKTPLVVQEALPEPVVVEQFEVEVNRKKFGPRFKRDAKAVEEAMISWPESEKVEKSAQL 457
Query: 96 -----------------EKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFY 138
E +++ I K K EH R + P VIEPSFG+GRI+Y L EH+++
Sbjct: 458 VAEGKIIVNVNGVEHTVESDLVTIEKRKHTEHIRTYTPNVIEPSFGLGRILYVLMEHAYW 517
Query: 139 TRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
TRP D V FP +APIK + PL
Sbjct: 518 TRPE---DVNRGVLSFPASIAPIKALIVPL 544
>sp|Q04451|SYG_BOMMO Glycine--tRNA ligase OS=Bombyx mori PE=1 SV=2
Length = 680
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 116/211 (54%), Gaps = 46/211 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
++++ +GID +RLRFRQH+ NEMAHYA +CWDAE S+GWIECVG ADRS YDL HT
Sbjct: 358 HMYMLAVGIDPKRLRFRQHMGNEMAHYACDCWDAECLSSYGWIECVGCADRSAYDLTQHT 417
Query: 61 KFSETR-EVEKLVIAPVKKE----------LGLAFKGSQKNV-----------VEALEK- 97
K + R EK + AP + E +G AFK + + +E ++K
Sbjct: 418 KATGIRLAAEKKLPAPKQIEVVEAIANNGRIGKAFKKDSQAINDTLATLDNAALEEMQKE 477
Query: 98 --------------------NMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
+++ + K +K H IP VIEPSFG+GRI+YC+ EH+F
Sbjct: 478 LDSNGEYTLITARGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNF 537
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
R GDEQ F PP VAP+KC V PL
Sbjct: 538 RMR---EGDEQRTYFSLPPTVAPMKCVVLPL 565
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS Q+R+ + + +V++ +++ + W DV YP
Sbjct: 632 RDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYP 667
>sp|Q10039|SYG_CAEEL Glycine--tRNA ligase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2
Length = 742
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 112/209 (53%), Gaps = 46/209 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
FL +GID RLRFRQHL+NEMAHYA +CWDAEI S+GWIECVG ADR+ YDL H K
Sbjct: 426 FLMKVGIDGRRLRFRQHLSNEMAHYAQDCWDAEILTSYGWIECVGNADRACYDLQQHYKA 485
Query: 63 SETREV-EKLVIAPVKKE----------LGLAFKGSQKNV-----------VEALEKNML 100
+ + V EK + PV LG +FK K + V ALE+ +L
Sbjct: 486 TNVKLVAEKKLPEPVDVNFVEAQANMALLGKSFKKDAKKIQTSLQQLTSEQVSALEEELL 545
Query: 101 L---------------------ISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYT 139
I K KK H + P VIEPS+GIGRI+Y L EHSF
Sbjct: 546 AKKLYNLSVDGQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIMYALLEHSFRQ 605
Query: 140 RPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
R GDEQ F PLVAPIKC+V P+
Sbjct: 606 R---EGDEQRTFLAFKPLVAPIKCSVLPI 631
>sp|Q9CZD3|SYG_MOUSE Glycine--tRNA ligase OS=Mus musculus GN=Gars PE=1 SV=1
Length = 729
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 114/216 (52%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 404 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 463
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 464 RATKVPLVAEKPLKEPKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELL 523
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K H +P VIEPSFG+GRI+Y + EH+F
Sbjct: 524 LSEKGEFTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTF 583
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 584 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 616
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR V E +V++ + +G TW DV + YP
Sbjct: 679 RDSMRQIRAEVSELPNVVRDLANGNITWADVEARYP 714
>sp|Q9FXG2|SYGC_ARATH Putative glycine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana
GN=At1g29870 PE=2 SV=2
Length = 463
Score = 153 bits (386), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 82/107 (76%), Gaps = 11/107 (10%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YLFL LGIDKERLRFR HLANEMAHYA +CWDAEIECS+GWIECVGIADRS YDL AH+
Sbjct: 355 YLFLIRLGIDKERLRFRHHLANEMAHYATDCWDAEIECSYGWIECVGIADRSDYDLRAHS 414
Query: 61 -----------KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALE 96
K +E EVEKL I P KELG AFKG+QKNVVEALE
Sbjct: 415 EKSGHALVAQEKLAEPIEVEKLAITPEMKELGPAFKGNQKNVVEALE 461
>sp|Q5I0G4|SYG_RAT Glycine--tRNA ligase (Fragment) OS=Rattus norvegicus GN=Gars PE=1
SV=1
Length = 637
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 114/216 (52%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 312 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 371
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 372 RATKVPLVAEKPLKEPKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLGACDECYITEMELL 431
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K H +P VIEPSFG+GRI+Y + EH+F
Sbjct: 432 LSEKGEFTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTF 491
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 492 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 524
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR V E SV++ + +G TW DV + YP
Sbjct: 587 RDSMRQIRAEVSELPSVVRDLANGNITWADVEARYP 622
>sp|P41250|SYG_HUMAN Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3
Length = 739
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 115/216 (53%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 414 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 473
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 474 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 533
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K + +P VIEPSFG+GRI+Y ++EH+F
Sbjct: 534 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 593
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 594 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 626
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR + E S+++ + +G TW DV + YP
Sbjct: 689 RDSMRQIRAEISELPSIVQDLANGNITWADVEARYP 724
>sp|Q5RBL1|SYG_PONAB Glycine--tRNA ligase OS=Pongo abelii GN=GARS PE=2 SV=1
Length = 739
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 115/216 (53%), Gaps = 46/216 (21%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
YL+L +GI ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL H
Sbjct: 414 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 473
Query: 61 K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
+ E + V + P K +G A+K K V+E
Sbjct: 474 RATKVPLVAEKPLKEPKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 533
Query: 94 ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
L K+M+ + + +K + +P VIEPSFG+GRI+Y ++EH+F
Sbjct: 534 LNEKGEFTIETEGKTFQLTKDMVNVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 593
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
+ R GDEQ F FP +VAP KC+V PL +++
Sbjct: 594 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 626
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP 204
RDS QIR V E S+++ + +G TW DV + YP
Sbjct: 689 RDSMRQIRAEVSELPSIVRDLANGNITWADVEARYP 724
>sp|Q8SQZ6|SYG_ENCCU Glycine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU10_1790 PE=1 SV=1
Length = 579
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 114/203 (56%), Gaps = 44/203 (21%)
Query: 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAH-- 59
LFL LGID+E LRFRQH +EMAHYA CWDAEI S+GWIECVGIADR+ YDL H
Sbjct: 285 LFLIELGIDRELLRFRQHKKDEMAHYAKGCWDAEIYTSYGWIECVGIADRACYDLSCHED 344
Query: 60 ---------TKFSETREVEKLVIAPVKKEL----------------GLAFKGSQKNVVEA 94
+ +E +E+E+ V+ KKE GL+ K +KNVV
Sbjct: 345 GSKVDLRCKRRLAEPKEIEEWVLKLDKKEWGAKLRDRFSVLMETVNGLSQKYIEKNVVSI 404
Query: 95 LE-KNMLLI-----------SKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPS 142
E +N L + S+ KKK IP VIEPSFGIGRI+Y L EHSFY R
Sbjct: 405 GENRNRLSVKFDEYTINIECSRVKKKVFVENVIPDVIEPSFGIGRILYALIEHSFYLR-- 462
Query: 143 KAGDEQLNVFRFPPLVAPIKCTV 165
++ VFRF P +AP++C +
Sbjct: 463 ---EDSRPVFRFKPAIAPVQCAI 482
>sp|A0B5U4|SYG_METTP Glycine--tRNA ligase OS=Methanosaeta thermophila (strain DSM 6194 /
PT) GN=glyS PE=3 SV=1
Length = 577
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 115/211 (54%), Gaps = 39/211 (18%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAH 59
Y +L +G+D+ERLRFRQH A+EMAHYAA+CWDAE+ GWIE VGIADR+ YDL +H
Sbjct: 275 YEYLLAVGVDRERLRFRQHKADEMAHYAADCWDAEVLLDRLGWIEIVGIADRTDYDLRSH 334
Query: 60 TKFS-----------ETREVEKLVIAPVKKELGLAFKGSQKNVVEAL------------- 95
S E +++ + P K LG FKG K + +AL
Sbjct: 335 MALSKANLSVFVHYPEPVRRKRVAVKPDMKVLGPRFKGRAKAIADALQAMSVADLKGDTI 394
Query: 96 -----------EKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKA 144
E+ ++ + + +++ +P VIEPSFGI RI+Y + EHS++ P +
Sbjct: 395 KITVDGETYEIERRLVSVEEIEEEIRGEYVVPHVIEPSFGIDRILYTVLEHSYHEEPVE- 453
Query: 145 GDEQLNVFRFPPLVAPIKCTVFPLRDSKDQI 175
DE V RF P ++PI + PL D KD++
Sbjct: 454 -DEMRVVLRFLPGISPIDVAILPLMD-KDEL 482
>sp|A6VIK1|SYG_METM7 Glycine--tRNA ligase OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=glyS PE=3 SV=1
Length = 574
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 112/222 (50%), Gaps = 50/222 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECS-HGWIECVGIADRSTYDLHAHTK 61
FL +GID+ +LRFRQHL NEMAHYAA+CWDAE+ +GWIECVGIADR+ YDL AH K
Sbjct: 285 FLMEIGIDESKLRFRQHLPNEMAHYAADCWDAELYTDRYGWIECVGIADRTNYDLLAHMK 344
Query: 62 FS-----------ETREVEKLVIAPVKKELGLAFKGSQK---------------NVVEAL 95
S E +EVE I K +G FKG K +VEAL
Sbjct: 345 NSSEDLSVFVELDEDKEVEVYEIELNYKLVGRTFKGDAKILEESLKELNDKKMEELVEAL 404
Query: 96 E-----------------KNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFY 138
E K L K KK IP VIEPS+GI RI YC+ EH+F
Sbjct: 405 ETEGKYVLKTCKRDFEILKEYLTAKKVKKIVKGEKIIPHVIEPSYGIDRITYCVMEHAF- 463
Query: 139 TRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVD 180
+E V F V+PIK VFPL + + +++D
Sbjct: 464 -----KEEEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMD 500
>sp|Q6M0Q7|SYG_METMP Glycine--tRNA ligase OS=Methanococcus maripaludis (strain S2 / LL)
GN=glyS PE=3 SV=1
Length = 574
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 111/222 (50%), Gaps = 50/222 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECS-HGWIECVGIADRSTYDLHAHTK 61
FL +GID+ +LRFRQHL NEMAHYAA+CWDAE+ +GWIECVG+ADR+ YDL AH K
Sbjct: 285 FLMEIGIDETKLRFRQHLPNEMAHYAADCWDAELYTDRYGWIECVGVADRTNYDLLAHMK 344
Query: 62 FS-----------ETREVEKLVIAPVKKELGLAFKGSQK---------------NVVEAL 95
S E E+E I K +G FKG K +VEAL
Sbjct: 345 NSGDDLSVFVELDEEHEIEAYEIELNYKLVGRTFKGDAKVLEESLKELDDKKMEELVEAL 404
Query: 96 E-----------------KNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFY 138
E K L K KK IP VIEPS+GI RI YC+ EH+F
Sbjct: 405 ETEGKYVLKTCKRDFEILKEYLTAKKVKKIVKGEKIIPHVIEPSYGIDRITYCVMEHAF- 463
Query: 139 TRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVD 180
DE V F V+PIK VFPL + + +++D
Sbjct: 464 -----KEDEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMD 500
>sp|A9A885|SYG_METM6 Glycine--tRNA ligase OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=glyS PE=3 SV=1
Length = 574
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 111/222 (50%), Gaps = 50/222 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECS-HGWIECVGIADRSTYDLHAHTK 61
FL +GID+ +LRFRQHL NEMAHYAA+CWDAE+ +GWIECVGIADR+ YDL AH K
Sbjct: 285 FLMEIGIDESKLRFRQHLPNEMAHYAADCWDAELYTDRYGWIECVGIADRTNYDLLAHMK 344
Query: 62 FS-----------ETREVEKLVIAPVKKELGLAFKGSQK---------------NVVEAL 95
S E E+E I K +G FKG K +VEAL
Sbjct: 345 NSGEDLSVFVELDEEHEIEAYEIELNYKLVGRTFKGDAKVLEESLKELDDKKMEELVEAL 404
Query: 96 E-----------------KNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFY 138
E K L K KK IP VIEPS+GI RI YC+ EH+F
Sbjct: 405 ETEGKYTLKTCKRDFELLKEYLTAKKVKKIVKGEKIIPHVIEPSYGIDRITYCVMEHAFK 464
Query: 139 TRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVD 180
+E V F V+PIK VFPL + + +++D
Sbjct: 465 E------EEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMD 500
>sp|Q06817|SYG2_YEAST Glycine--tRNA ligase 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GRS2 PE=1 SV=1
Length = 618
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 106/206 (51%), Gaps = 46/206 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTK- 61
FL +GI+K++ RFRQHL NEMAHYA +CWD EI S+GWIECVG ADR+ +DL H+K
Sbjct: 306 FLLNIGINKDKFRFRQHLKNEMAHYATDCWDGEILTSYGWIECVGCADRAAFDLTVHSKK 365
Query: 62 ----------FSETREVEKLVIAPVKKELGLAFKG------------SQKNVV---EALE 96
+E + V+ KK G FK SQ ++ E LE
Sbjct: 366 TGRSLTVKQKLDTPKERTEWVVEVNKKFFGSKFKQKAKLIESVLSKFSQDELIRRHEELE 425
Query: 97 KN-----------------MLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYT 139
KN ++ I + +H R +IP VIEPSFG+GRIIYC+++H F
Sbjct: 426 KNGEFTCQVNGQIVKLDSSLVTIKMKTTLQHIREYIPNVIEPSFGLGRIIYCIFDHCFQV 485
Query: 140 RPSKAGDEQLNVFRFPPLVAPIKCTV 165
R E F FP +APIK V
Sbjct: 486 R---VDSESRGFFSFPLQIAPIKVFV 508
>sp|A4FZX1|SYG_METM5 Glycine--tRNA ligase OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=glyS PE=3 SV=1
Length = 575
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 112/222 (50%), Gaps = 50/222 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECS-HGWIECVGIADRSTYDLHAHTK 61
FL +GID+ +LRFRQHL NEMAHYAA+CWDAE+ +GWIECVGIADR+ YDL AH K
Sbjct: 285 FLMEIGIDESKLRFRQHLPNEMAHYAADCWDAELYTDRYGWIECVGIADRTNYDLLAHMK 344
Query: 62 FS-----------ETREVEKLVIAPVKKELGLAFKGSQK---------------NVVEAL 95
S E +E+E I K +G FKG K +VEAL
Sbjct: 345 NSSEDLSVFVELDEDKEIEVYEIELNYKLVGRTFKGDSKVLEESLKELDDKKMEELVEAL 404
Query: 96 E-----------------KNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFY 138
E K L K KK IP VIEPS+GI RI YC+ EH+F
Sbjct: 405 ETEGKYVLSTCKRDFELLKEYLTAKKVKKTVKGEKIIPHVIEPSYGIDRITYCVMEHAF- 463
Query: 139 TRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVD 180
DE V F V+PIK VFPL + + +++D
Sbjct: 464 -----KEDEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMD 500
>sp|A6URK3|SYG_METVS Glycine--tRNA ligase OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=glyS PE=3 SV=1
Length = 574
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 118/229 (51%), Gaps = 55/229 (24%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECS-HGWIECVGIADRSTYDLHAHTK 61
FL +GID+ +LRFRQHL NEMAHYAA+CWDAE+ +GWIECVGIADR+ YDL AH K
Sbjct: 285 FLMDIGIDETKLRFRQHLPNEMAHYAADCWDAELYTDRYGWIECVGIADRTDYDLRAHMK 344
Query: 62 -----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVEALE-------------- 96
F E++E+E I K +G FKG K + E+L+
Sbjct: 345 NSGEDLSVFVEFDESKEIEVYEIELNYKLVGKTFKGDAKILEESLKELSNDKMEELIKTL 404
Query: 97 KN------------------MLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFY 138
KN L + K KK +P VIEPS+GI RI YC+ EH+F
Sbjct: 405 KNNEKYILKTCKRDFEVLNEYLTVKKVKKNVTGEKIVPHVIEPSYGIDRITYCVIEHAF- 463
Query: 139 TRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIK 187
K D++ + F V+P+K VFPL + + +DE A +K
Sbjct: 464 ----KEEDDR-TLLAFVNTVSPVKVGVFPLVNKE-----GMDEIAENLK 502
>sp|Q57681|SYG_METJA Glycine--tRNA ligase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=glyS PE=3 SV=1
Length = 577
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 106/220 (48%), Gaps = 50/220 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHT- 60
FL +GIDK+++RFRQHL NEMAHYA +CWDAEI GWIECVGIADR+ YDL +H+
Sbjct: 286 FLEAIGIDKDKIRFRQHLPNEMAHYAIDCWDAEIYTERFGWIECVGIADRTDYDLRSHSA 345
Query: 61 ----------KFSETREVEKLVIAPVKKELGLAFKGSQKNV---------------VEAL 95
+ E RE+E I K +G FK K + V+ +
Sbjct: 346 HSGVELSVFVELDEEREIETYEINLNYKVVGKIFKKDTKAIEAYINNLSEKEKEEFVKNI 405
Query: 96 EKNMLLISKEKKKEHQ-----------------RVFIPLVIEPSFGIGRIIYCLYEHSFY 138
E + +I KE + IP VIEPS+GI RI YCL EHS+
Sbjct: 406 ENDGKVIINIDGKEFEILKDYVEIKKVKKVIKGEKVIPHVIEPSYGIDRITYCLLEHSYR 465
Query: 139 TRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVS 178
+ P +APIK V PL + D +++
Sbjct: 466 EEEDRV------YLDLKPSIAPIKAYVLPLVNKDDMPKIA 499
>sp|O29346|SYG_ARCFU Glycine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=glyS PE=3
SV=1
Length = 570
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 103/200 (51%), Gaps = 36/200 (18%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
FL +GI E+LRFRQH E AHYA +CWDAE+ S+GWIE VGIADR+ YDL H+KF
Sbjct: 271 FLLEIGIKDEKLRFRQHKDVERAHYATDCWDAEVLTSYGWIEVVGIADRTNYDLKRHSKF 330
Query: 63 S-----------ETREVEKLVIAPVKKELGLAFKGSQKNVVEALE---------KNMLLI 102
S E +V++ I P+ +LG F+ K V EALE + + +
Sbjct: 331 SGEDLSVFVPYEEPVKVKRRKIVPILSKLGPEFRQKAKKVAEALEALNVEADLDEVEVEV 390
Query: 103 SKEKKKEHQRVF--------------IPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQ 148
EK K + F IP VIEPSFG+ RI Y + EH+F E+
Sbjct: 391 DGEKVKVTKEFFEIQEVEEEVTGEKVIPHVIEPSFGLDRITYSVLEHAF--DKDVVDGEE 448
Query: 149 LNVFRFPPLVAPIKCTVFPL 168
V R V+PI+ V PL
Sbjct: 449 RRVLRLKRWVSPIEVAVLPL 468
>sp|Q8TYY9|SYG_METKA Glycine--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=glyS PE=3 SV=1
Length = 571
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 106/207 (51%), Gaps = 42/207 (20%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTK 61
L +G+ E +R RQHL E AHYA++CWD E++ GW+E VGIADR+ YDL H++
Sbjct: 281 MLNEMGVPNEAIRSRQHLPEERAHYASDCWDVEVKLERFGWVEVVGIADRTDYDLKKHSE 340
Query: 62 FSET-----REVEKLVIA----PVKKELGLAFKGSQKNVVEALEK-------------NM 99
S RE+E+ I PV KELG FK + EAL + +
Sbjct: 341 HSGEDLRAFRELEEPKIVYRPEPVMKELGPRFKSDAPKIAEALRRITAESEDELKGGLTV 400
Query: 100 LLISKE-----------KKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQ 148
+ KE K+K F P VIEPS+GI RI+YC+ EH+F D +
Sbjct: 401 EVDGKEVEVPPECYEIVKEKVTGERFYPHVIEPSYGIDRILYCVLEHNF--------DPE 452
Query: 149 LNVFRFPPLVAPIKCTVFPLRDSKDQI 175
VFRFP +API+ VFPL D +
Sbjct: 453 EGVFRFPAWLAPIEVGVFPLLKRSDMV 479
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 169 RDSKDQIRVSVDEAASVIKAVTDGQTTWED 198
RD+ +Q+RV VDE A V++ + DG +E+
Sbjct: 537 RDTTEQVRVEVDELADVLRGLIDGDLEFEE 566
>sp|O27874|SYG_METTH Glycine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=glyS PE=3 SV=1
Length = 565
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 108/216 (50%), Gaps = 44/216 (20%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAE-IECSHGWIECVGIADRSTYDLHAHTK 61
FL +GI ++ LRFRQHL +EMAHYA +CWD E S+GWIE +GIADR+ YDL +H++
Sbjct: 281 FLMDIGIPEDALRFRQHLPSEMAHYAIDCWDVEAFTDSYGWIEIIGIADRTDYDLRSHSQ 340
Query: 62 -----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVEAL-EKNMLLISKEKKKE 109
+ E R + K + P +LG F+ + AL E ++ I K +E
Sbjct: 341 HSGEDLRVFIEYDEPRRIRKRAVKPDMGKLGPKFRKDAARIASALSEVDVEEIEKALDEE 400
Query: 110 HQ-------------------------RVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKA 144
+ R P VIEPSFGI RIIY L HS
Sbjct: 401 GRFILEGEFEILPDDVSFEDVEEVVTGRKVYPHVIEPSFGIDRIIYTLLLHSL------V 454
Query: 145 GDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVD 180
D + FR PP VAP++ TV PL + ++ + +++
Sbjct: 455 DDGERTYFRLPPHVAPVEVTVLPLVNREEMVMTALE 490
>sp|C6A317|SYG_THESM Glycine--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=glyS PE=3 SV=1
Length = 570
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 93/206 (45%), Gaps = 47/206 (22%)
Query: 4 LACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTK- 61
L +GI ++RFRQ L E AHY+++ WD EI GWIECVGIA R YDL H K
Sbjct: 283 LLDIGIPANKIRFRQQLPEERAHYSSDTWDVEIHSERFGWIECVGIAYRGNYDLSRHVKE 342
Query: 62 ----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVEA----------------- 94
+ E + ++KL I+ K +G KG K + +
Sbjct: 343 SGADLTVMIHYKEPKIIKKLKISLNMKRVGPKLKGDAKRINQKLQEMTQEELKKIFEGLE 402
Query: 95 -----------LEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSK 143
LEK +I + ++K H +P V+EPSFGI R Y L E+S
Sbjct: 403 KIGKVFLDGYELEKEDFIIKEVEEKVHGEKLVPHVLEPSFGIDRPFYLLLENSIVM---- 458
Query: 144 AGDEQLNVF-RFPPLVAPIKCTVFPL 168
DE V+ + +API+ V PL
Sbjct: 459 --DEDSRVYLKIKKDMAPIEVAVLPL 482
>sp|Q5JID8|SYG_PYRKO Glycine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=glyS PE=3 SV=1
Length = 570
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 46/205 (22%)
Query: 4 LACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTK- 61
L +GI ++++RFRQ L E AHY+ + WDAEI GW+ECVGIA+R YDL H +
Sbjct: 283 LLDIGIPEDKIRFRQQLPEERAHYSRDTWDAEIHSERFGWVECVGIANRGDYDLSRHMRE 342
Query: 62 ----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE------------------ 93
+ E + V+KL ++ K +G K K + E
Sbjct: 343 SGADLTVLIHYDEPKIVKKLEVSLNMKRVGPKLKKDAKRINELIKGWGEEKKRELVELLE 402
Query: 94 ----------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSK 143
LEK+ +I + ++K +P V+EPSFGI R Y L E+S
Sbjct: 403 KEGKVTIEGYELEKDDFIIREVEEKITGEKIVPHVLEPSFGIDRPFYLLLENSLVI---- 458
Query: 144 AGDEQLNVFRFPPLVAPIKCTVFPL 168
+E R +API+ V PL
Sbjct: 459 --EEDRTYLRIKKDMAPIEVAVLPL 481
>sp|Q8U0G2|SYG_PYRFU Glycine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=glyS PE=3 SV=1
Length = 568
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 96/206 (46%), Gaps = 47/206 (22%)
Query: 4 LACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTKF 62
L +GI ++++RFRQ L E AHY+A+ WDAEI GW+ECVG+A R+ YDL H K
Sbjct: 281 LLDIGIPEDKIRFRQQLPEERAHYSADTWDAEIYSERFGWVECVGLAYRTDYDLSRHMKM 340
Query: 63 S-----------ETREVEKLVIAPVKKELGLAFKGSQKNVVEA----------------- 94
S + + V+KL + K++G K K + E
Sbjct: 341 SGADLTVMIHYDKPKIVKKLNVTLNMKKVGPKLKEKVKEINEKLKSMSQEELRKLVEELN 400
Query: 95 -----------LEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSK 143
LEK L+I + ++K +P V+EPSFGI R Y L E+S
Sbjct: 401 ANGKVIIEGHELEKEDLIIKEVEEKIQGEKIVPHVLEPSFGIDRPFYLLLENSLTV---- 456
Query: 144 AGDEQLNVF-RFPPLVAPIKCTVFPL 168
DE V+ + +API+ V PL
Sbjct: 457 --DEDGRVYLKIKKDMAPIEVAVLPL 480
>sp|C5A1H0|SYG_THEGJ Glycine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=glyS PE=3 SV=1
Length = 570
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 46/205 (22%)
Query: 4 LACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTK- 61
L +GI ++++RFRQ L E AHY+ + WDAE+ GW+ECVGIA+R YDL H +
Sbjct: 283 LLDIGIPEDKIRFRQQLPEERAHYSRDTWDAEVHSERFGWVECVGIANRGDYDLSRHMRE 342
Query: 62 ----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE------------------ 93
+ E + V++L ++ K +G + K + E
Sbjct: 343 SGADLTVLIHYDEPKIVKRLEVSLNLKRVGPKLRKDAKRINELIKSWNEEKKRELVEILG 402
Query: 94 ----------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSK 143
LEK+ +I + ++K +P V+EPSFGI R Y L E+S
Sbjct: 403 KEGKITIEGYELEKDDFIIREVEEKITGEKIVPHVLEPSFGIDRPFYLLLENSLVI---- 458
Query: 144 AGDEQLNVFRFPPLVAPIKCTVFPL 168
+E + +API+ V PL
Sbjct: 459 --EEDRTYLKLKKDMAPIEVAVLPL 481
>sp|Q9V176|SYG_PYRAB Glycine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=glyS PE=3 SV=1
Length = 571
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 47/218 (21%)
Query: 4 LACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTKF 62
L +GI ++++RFRQ L E AHY+A+ WDAE+ GW+ECVG+A R+ YDL H K
Sbjct: 283 LLDIGIPEDKIRFRQQLPEERAHYSADTWDAEVYSERFGWVECVGLAYRTDYDLSRHMKM 342
Query: 63 S-----------ETREVEKLVIAPVKKELGLAFKGSQKNVVEA----------------- 94
S + + V++L ++ K +G K K + E
Sbjct: 343 SGADLTVMIHYDKPKIVKRLKVSLNMKSVGPKLKKDAKRINEKIQAMSEEELRELVKKLN 402
Query: 95 -----------LEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSK 143
L K+ +I + ++K IP V+EPSFGI R Y L E+S
Sbjct: 403 EEGKIVIDGYELSKDDFIIKEVEEKVTGEKIIPHVLEPSFGIDRPFYLLLENSLTI---- 458
Query: 144 AGDEQLNVF-RFPPLVAPIKCTVFPLRDSKDQIRVSVD 180
DE ++ + +API+ V PL + +++ D
Sbjct: 459 --DEDGRIYLKIKKDMAPIEVAVLPLVAKEPLTKIAYD 494
>sp|O59235|SYG_PYRHO Glycine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=glyS PE=3
SV=1
Length = 570
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 47/206 (22%)
Query: 4 LACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTKF 62
L +GI ++++RFRQ L E AHY+A+ WDAE+ GW+ECVG+A R+ YDL H K
Sbjct: 283 LLDIGIPEDKIRFRQQLPEERAHYSADTWDAEVYSERFGWVECVGLAYRTDYDLSRHMKM 342
Query: 63 S-----------ETREVEKLVIAPVKKELGLAFKGSQKNVVE------------------ 93
S + + V+++ ++ K++G K K + E
Sbjct: 343 SGADLTVMIHYDKPKVVKRIQVSLNMKKVGPKLKADAKKINEIIKSMDQKELEKLVKDLN 402
Query: 94 ----------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSK 143
L K ++ + ++K +P V+EPSFGI R Y L E+S
Sbjct: 403 EKGKVTIEGYELSKEDFIVKEVEEKITGEKIVPHVLEPSFGIDRPFYLLLENSLTV---- 458
Query: 144 AGDEQLNVF-RFPPLVAPIKCTVFPL 168
DE ++ + +API+ V PL
Sbjct: 459 --DEDGRIYLKIKKDMAPIEVAVLPL 482
>sp|Q97EB8|SYG_CLOAB Glycine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=glyQS
PE=3 SV=1
Length = 462
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
FL LGI+KE LRFR H A E+ Y+ D E + GW E G+ADR+ YDL H
Sbjct: 250 FLLDLGINKENLRFRDHSAEELVFYSKATSDIEYKFPFGWGELWGVADRTDYDLKKHMDH 309
Query: 63 SETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS 122
S + N L S +K ++P VIEPS
Sbjct: 310 S------------------------------GEDMNYLDPSTNEK------YVPYVIEPS 333
Query: 123 FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
G R+ ++ + GD+++ V F P +APIK V PL
Sbjct: 334 LGADRVALAFLIDAYDEEELEGGDQRI-VLHFHPQIAPIKAAVLPL 378
>sp|Q72PW7|SYG_LEPIC Glycine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=glyQS PE=3 SV=1
Length = 464
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+GI KE LR R+H E++ Y+ D E + + GW E GIA R+ YDL+ H KFS
Sbjct: 255 VGIKKENLRVREHEKEELSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSG-- 312
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
E L K + + + ++P V+EP+ G+
Sbjct: 313 --EDL--------------------------------KYQDQVQNKKYVPFVVEPALGVN 338
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
R+ + ++ G E V RF P +AP+K VFPL
Sbjct: 339 RLFLAVVTDAYEEEKLPDG-ETRTVLRFSPKIAPVKAAVFPL 379
>sp|Q8F6C0|SYG_LEPIN Glycine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=glyQS
PE=3 SV=1
Length = 464
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+GI KE LR R+H E++ Y+ D E + + GW E GIA R+ YDL+ H KFS
Sbjct: 255 VGIKKENLRVREHEKEELSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSG-- 312
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
E L K + + + ++P V+EP+ G+
Sbjct: 313 --EDL--------------------------------KYQDQVQNKKYVPFVVEPALGVN 338
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
R+ + ++ G E V RF P +AP+K +FPL
Sbjct: 339 RLFLAVVTDAYEEEKLPDG-ETRTVLRFSPKIAPVKAAIFPL 379
>sp|Q04Z62|SYG_LEPBL Glycine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=glyQS PE=3 SV=1
Length = 464
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+G+ KE LR R+H E++ Y+ D E + + GW E GIA R+ YDL+ H KFS
Sbjct: 255 VGVKKENLRIREHEKEELSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSG-- 312
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
E L K + + + ++P V+EP+ G+
Sbjct: 313 --EDL--------------------------------KYQDQVQNKKYVPFVVEPALGVN 338
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
R+ + ++ G E V RF P +AP+K VFPL
Sbjct: 339 RLFLAVVTDAYQEEKLPDG-EIRTVLRFSPKIAPVKVAVFPL 379
>sp|Q04QV5|SYG_LEPBJ Glycine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=glyQS PE=3 SV=1
Length = 464
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+G+ KE LR R+H E++ Y+ D E + + GW E GIA R+ YDL+ H KFS
Sbjct: 255 VGVKKENLRIREHEKEELSFYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFSG-- 312
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
E L K + + + ++P V+EP+ G+
Sbjct: 313 --EDL--------------------------------KYQDQVQNKKYVPFVVEPALGVN 338
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
R+ + ++ G E V RF P +AP+K VFPL
Sbjct: 339 RLFLAVVTDAYQEEKLPDG-EIRTVLRFSPKIAPVKVAVFPL 379
>sp|P56206|SYG_THET8 Glycine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=glyQS PE=1 SV=3
Length = 506
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+G+ +E L Q E+AHYA D HG E GIA+R+ +DL +HTK E
Sbjct: 268 MGLSRENLVPYQQPPEELAHYAKATVDILYRFPHGLEELEGIANRTDFDLGSHTKDQEAL 327
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
+ V+ LA+ + E + F+P VIEPS G+
Sbjct: 328 GITARVLRNEHSTQRLAY---------------------RDPETGKWFVPYVIEPSAGVD 366
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVI 186
R + L +F G+E++ V + P +APIK V PL ++ +I + +
Sbjct: 367 RGVLALLAEAFTREELPNGEERI-VLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARL 425
Query: 187 KAVTDGQTTWEDV 199
A+ G+ +ED
Sbjct: 426 LALGLGRVLYEDT 438
>sp|Q72L85|SYG_THET2 Glycine--tRNA ligase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=glyQS PE=3 SV=1
Length = 506
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 7 LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
+G+ +E L + E+AHYA D HG E GIA+R+ +DL +HTK E
Sbjct: 268 MGLSRENLVPYEQPPEELAHYAKATVDILYRFPHGLEELEGIANRTDFDLGSHTKDQEAL 327
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
+ V+ LA+ + E + F+P VIEPS G+
Sbjct: 328 GITARVLRNEHSTQRLAY---------------------RDPETGKWFVPYVIEPSAGVD 366
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVI 186
R + L +F G+E++ V + P +APIK V PL ++ +I + +
Sbjct: 367 RGVLALLAEAFTREELPNGEERI-VLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARL 425
Query: 187 KAVTDGQTTWEDV 199
A+ G+ +ED
Sbjct: 426 LALGLGRVLYEDT 438
>sp|B7J1U3|SYG_BORBZ Glycine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=glyQS
PE=3 SV=1
Length = 445
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 35/167 (20%)
Query: 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTK 61
F+ L I +RLRF+ H + ++AHYA +D E E G+ E GI +R YDL H K
Sbjct: 220 FFIETLKISPDRLRFKAHDSTQLAHYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLTQHAK 279
Query: 62 FSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEP 121
FS ++ V E + L++KEK ++P VIE
Sbjct: 280 FS-----------------------NKPKVFEYHD----LLTKEK-------YVPYVIET 305
Query: 122 SFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
S G+ R + ++ GD+++ V R P +AP K +FPL
Sbjct: 306 SAGLTRSVLMTLCDAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPL 351
>sp|O51344|SYG_BORBU Glycine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=glyQS PE=3 SV=1
Length = 445
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 35/167 (20%)
Query: 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTK 61
F+ L I +RLRF+ H + ++AHYA +D E E G+ E GI +R YDL H K
Sbjct: 220 FFIETLKISPDRLRFKAHDSTQLAHYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLTQHAK 279
Query: 62 FSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEP 121
FS ++ V E + L++KEK ++P VIE
Sbjct: 280 FS-----------------------NKPKVFEYHD----LLTKEK-------YVPYVIET 305
Query: 122 SFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
S G+ R + ++ GD+++ V R P +AP K +FPL
Sbjct: 306 SAGLTRSVLMTLCDAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPL 351
>sp|Q9YBF8|SYG_AERPE Glycine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=glyS PE=3 SV=1
Length = 583
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 46/233 (19%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH-GWIECVGIADRSTYDLHAHTK 61
F+ LG+ + + F + E AHY++ +D ++ S GWIE G + R YDL H K
Sbjct: 286 FVEDLGVPSDSIMFEEKGPEERAHYSSQTFDQLVKVSRWGWIEVAGHSYRGDYDLSRHMK 345
Query: 62 FS-ETREVEKLVIAPV----------KKELGLAFKGSQKNVVEALEK------------- 97
+S + K P+ K +G A K K V+E L +
Sbjct: 346 YSGQDLTAFKPYPKPIVVKKRRVVVDKAAIGRALKSRAKTVLEELGRMGEGELERLAASN 405
Query: 98 -----------NMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGD 146
L I + ++K R F+P V+EPSFG R +Y E+++ +
Sbjct: 406 RAVVAGVELPPGSLRIVEVEEKVSGRRFVPHVVEPSFGTDRNVYVALEYAYREVEGRV-- 463
Query: 147 EQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTD-GQTTWED 198
V FP +AP++ V PL ++ +++ V+ A V + + + G T + D
Sbjct: 464 ----VLAFPRDIAPVQAVVLPLVENDEKL---VERARMVYETLVEAGFTVYYD 509
>sp|Q4A5V9|SYG_MYCS5 Glycine--tRNA ligase OS=Mycoplasma synoviae (strain 53) GN=glyQS
PE=3 SV=1
Length = 451
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 50/200 (25%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
Y F+ LG+ K L+ R+H E+AHY+ D E GW E +GIA R +DL H+
Sbjct: 241 YDFMLKLGLSKNNLKVRKHDQEELAHYSKATVDLEYNFPFGWGELMGIAHRGNFDLSTHS 300
Query: 61 KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIE 120
KFS + +E L+ N + IP VIE
Sbjct: 301 KFSNEK-------------------------LEYLDPNT-----------NKKLIPSVIE 324
Query: 121 PSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD------- 173
PS G+ R++ + ++ D +L V + ++P K + PL +
Sbjct: 325 PSVGLDRLMLAILCEAYSEEKVSESDTRL-VLKLDKKLSPYKVAILPLIKKFNPKANEIY 383
Query: 174 ------QIRVSVDEAASVIK 187
I V+ DE+AS+ K
Sbjct: 384 SYLIDKNISVTFDESASIGK 403
>sp|Q0SNE2|SYG_BORAP Glycine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=glyQS PE=3
SV=1
Length = 445
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 35/167 (20%)
Query: 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTK 61
F+ L I +RLR + H + E+AHYA + +D E E G+ E GI +R YDL H+K
Sbjct: 220 FFIETLKIRPDRLRLKAHNSTELAHYAKSAFDIEYEFPFGFQEIEGIHNRGNYDLTQHSK 279
Query: 62 FSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEP 121
FS +V E + LL +KE+ ++P VIE
Sbjct: 280 FSNNSKV--------------------------FEYHDLL-TKER-------YVPYVIET 305
Query: 122 SFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
S G+ R + ++ GD+++ V R P +AP K +FPL
Sbjct: 306 SAGLTRSVLMTLCDAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPL 351
>sp|B1HTI6|SYG_LYSSC Glycine--tRNA ligase OS=Lysinibacillus sphaericus (strain C3-41)
GN=glyQS PE=3 SV=1
Length = 461
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 37/166 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
+L LG+ ++ +R R H +E++HY+ D E + GW E GIADR+ YDL H +
Sbjct: 248 WLLNLGMKEDSMRLRDHEDDELSHYSNATTDIEFKFPFGWGELWGIADRTDYDLKQHMEH 307
Query: 63 SETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS 122
S + I PV + +IP IEPS
Sbjct: 308 SGE---DFTYIDPVSNDR---------------------------------YIPYCIEPS 331
Query: 123 FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
G R+ + Y GD++ V RF P +AP K V PL
Sbjct: 332 LGADRVTLAFLCDA-YDEEELEGDDKRTVLRFHPAIAPFKAAVLPL 376
>sp|Q661P8|SYG_BORGA Glycine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=glyQS PE=3
SV=1
Length = 445
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 35/167 (20%)
Query: 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTK 61
F+ L I ++LRF+ H + ++AHYA + +D E E G+ E GI +R YDL H+K
Sbjct: 220 FFIETLKIRPDKLRFKAHDSTQLAHYAKSAFDIEYEFPFGFQEVEGIHNRGNYDLTQHSK 279
Query: 62 FSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEP 121
FS ++ E + LL +KE+ ++P VIE
Sbjct: 280 FSNNPKI--------------------------FEYHDLL-TKER-------YVPHVIET 305
Query: 122 SFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
S G+ R + +++ GD+++ V R P +AP K +FPL
Sbjct: 306 SAGLTRSVLMTLCNAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPL 351
>sp|Q9RSR5|SYG_DEIRA Glycine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC 13939
/ DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=glyQS PE=3 SV=2
Length = 506
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 26/203 (12%)
Query: 8 GIDKERLRFRQHLANEMAHYAANCWDAEIEC-SHGWIECVGIADRSTYDLHAHTKFSETR 66
G+ +E++ ++AHY+ +D + + G E GIA+RS YDL +HTK
Sbjct: 269 GVPREKIEILDVPKEDLAHYSKRTYDLMYDYPTLGHEEIEGIANRSDYDLGSHTK----- 323
Query: 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
+ ELGL K + N +++ K + E + +P VIEPS G+
Sbjct: 324 ---------SQSELGLVAKVEENN--DSIAKLTI-----PHPETNKPVVPFVIEPSAGVD 367
Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVI 186
R + + +F + G+E++ V + P +APIK V PL ++++I + +
Sbjct: 368 RAMLAVLSEAFTKETLENGNERI-VLKLKPHLAPIKVAVIPLARNREEITDVAKAIKAEL 426
Query: 187 KAVTDGQTTWED---VWSSYPHH 206
+ + G+ +ED + +Y H
Sbjct: 427 QGLGLGRVLYEDSGNIGKAYRRH 449
>sp|Q8RB46|SYG_THETN Glycine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=glyQS PE=3
SV=1
Length = 461
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 50/195 (25%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
+L G+ +E LRFR H E++HY+ D E GW E GIA+R+ YDL H +
Sbjct: 249 WLVEFGLKRENLRFRDHKKEELSHYSTATTDIEYNFPFGWGELWGIANRTDYDLRQHMEH 308
Query: 63 SETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS 122
S G + ++ EK +IP IEPS
Sbjct: 309 S----------------------GEDMTYTDP-------VTGEK-------YIPYCIEPS 332
Query: 123 FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLR------------D 170
G+ R++ + Y G+ ++ V R P +AP+K VFPL D
Sbjct: 333 VGVDRLMLAFLVDA-YDEEEVEGETRV-VLRLHPAIAPVKVAVFPLSKKLNEAAYKIYLD 390
Query: 171 SKDQIRVSVDEAASV 185
K + DE+ S+
Sbjct: 391 LKKKFPAEYDESGSI 405
>sp|B2S075|SYG_BORHD Glycine--tRNA ligase OS=Borrelia hermsii (strain DAH) GN=glyQS PE=3
SV=1
Length = 445
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 35/167 (20%)
Query: 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTK 61
F+ LGI + LRF++H +E+AHYA D E + G+ E GI +R YDL H K
Sbjct: 220 FFIEILGIKSDNLRFKEHKGDELAHYAKAAIDIEYKFPFGFQEIEGIHNRGNYDLSQHAK 279
Query: 62 FSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEP 121
F G K L + LIS ++ +IP VIE
Sbjct: 280 FC----------------------GKPK-----LFEYHDLISGDR-------YIPYVIET 305
Query: 122 SFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
S G+ R + ++ + GD+++ V R P +AP K + PL
Sbjct: 306 SLGLTRSVLMTLCDAYAHEELEGGDKRI-VLRLHPKIAPYKVAILPL 351
>sp|A3DF15|SYG_CLOTH Glycine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405
/ DSM 1237) GN=glyQS PE=3 SV=1
Length = 462
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 69/168 (41%), Gaps = 37/168 (22%)
Query: 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
+ +L L I KE LR R H E++HY+ D E GW E GIADR+ +DL H
Sbjct: 247 FNWLLSLNIKKENLRMRDHSKEELSHYSNATTDIEYLFPFGWGELWGIADRTDFDLRQHA 306
Query: 61 KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIE 120
+ S+ L++ N R +IP IE
Sbjct: 307 EHSKE---------------DLSYFDPNTN---------------------RKYIPYCIE 330
Query: 121 PSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
PS G R+ ++ + GD ++ V RF P +AP+K V PL
Sbjct: 331 PSLGADRVALVFLCDAYDEEEVEEGDIRV-VLRFHPAIAPVKIAVLPL 377
>sp|B9DNL1|SYG_STACT Glycine--tRNA ligase OS=Staphylococcus carnosus (strain TM300)
GN=glyQS PE=3 SV=1
Length = 463
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 36/166 (21%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
+L LGI + +R R H +E++HY+ D E + GW E GIA R+ YDL H++F
Sbjct: 249 WLLDLGIKNDSIRLRDHDEDELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLKQHSEF 308
Query: 63 SETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS 122
S G FK E +IP IEPS
Sbjct: 309 S-----------------GDDFKYHDPETNEK-------------------YIPYCIEPS 332
Query: 123 FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
G R+ ++ + ++ V F P +AP K V PL
Sbjct: 333 LGADRVTLAFLCDAYDREGVEGSKDERTVLHFHPAIAPYKAAVLPL 378
>sp|A5N4L2|SYG_CLOK5 Glycine--tRNA ligase OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=glyQS PE=3 SV=1
Length = 463
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 37/166 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
FL LGI +E +RFR H E++HY+ D E GW E GIADR+ YDL H
Sbjct: 250 FLLKLGIKEENIRFRVHEKEELSHYSNATSDIEYLFPFGWGELWGIADRTDYDLTQHQNR 309
Query: 63 SETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS 122
S + + PV E +IP IEPS
Sbjct: 310 SGK---DMTYLNPVTNER---------------------------------YIPYCIEPS 333
Query: 123 FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
G R + ++ + GD + V F P +AP K + PL
Sbjct: 334 VGADRAVLAFLVDAYDEEELEGGDVR-TVMHFHPAIAPFKVAILPL 378
>sp|B9DY74|SYG_CLOK1 Glycine--tRNA ligase OS=Clostridium kluyveri (strain NBRC 12016)
GN=glyQS PE=3 SV=1
Length = 463
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 37/166 (22%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
FL LGI +E +RFR H E++HY+ D E GW E GIADR+ YDL H
Sbjct: 250 FLLKLGIKEENIRFRVHEKEELSHYSNATSDIEYLFPFGWGELWGIADRTDYDLTQHQNR 309
Query: 63 SETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS 122
S + + PV E +IP IEPS
Sbjct: 310 SGK---DMTYLNPVTNER---------------------------------YIPYCIEPS 333
Query: 123 FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
G R + ++ + GD + V F P +AP K + PL
Sbjct: 334 VGADRAVLAFLVDAYDEEELEGGDVR-TVMHFHPAIAPFKVAILPL 378
>sp|Q899G6|SYG_CLOTE Glycine--tRNA ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=glyQS PE=3 SV=1
Length = 463
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 76/197 (38%), Gaps = 49/197 (24%)
Query: 3 FLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKF 62
FL LG+ K+ LR R+H E+A Y+ D E GW E GIADR+ YDL H
Sbjct: 250 FLLSLGLAKDNLRIREHAKEELAFYSKATVDIEYLFPFGWGELWGIADRTDYDLKQHMNH 309
Query: 63 SETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS 122
S K++ + E ++ ++P IEPS
Sbjct: 310 S--------------------------------GKDLTYLDPETNEK----YLPYCIEPS 333
Query: 123 FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL-RDSKDQ------- 174
G R+ ++ GD + V R P +AP K + PL + KD+
Sbjct: 334 LGADRVALAFLVDAYDEEELDGGDSR-TVLRLHPALAPFKAAILPLTKKLKDKSLEVYSM 392
Query: 175 ----IRVSVDEAASVIK 187
V DEA ++ K
Sbjct: 393 LSKYFNVDYDEAGTIGK 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,115,016
Number of Sequences: 539616
Number of extensions: 3132854
Number of successful extensions: 7592
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 7242
Number of HSP's gapped (non-prelim): 254
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)