Query 044953
Match_columns 213
No_of_seqs 117 out of 730
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zt5_A Glycyl-tRNA synthetase; 100.0 4.9E-43 1.7E-47 342.4 11.8 208 1-211 360-677 (693)
2 3ikl_A DNA polymerase subunit 100.0 3.7E-33 1.3E-37 262.3 8.8 124 2-167 229-355 (459)
3 1g5h_A Mitochondrial DNA polym 100.0 7.1E-30 2.4E-34 238.8 7.8 159 2-202 219-449 (454)
4 1ati_A Glycyl-tRNA synthetase; 99.9 1E-25 3.6E-30 212.6 11.3 165 2-188 262-426 (505)
5 3vbb_A Seryl-tRNA synthetase, 99.0 1.5E-10 5.2E-15 110.5 5.2 113 2-168 350-470 (522)
6 1nj1_A PROR, proline-tRNA synt 99.0 9.2E-10 3.1E-14 103.8 10.5 109 2-168 212-322 (501)
7 1evl_A Threonyl-tRNA synthetas 99.0 1.4E-09 4.6E-14 98.7 9.9 117 19-193 213-394 (401)
8 2dq0_A Seryl-tRNA synthetase; 98.9 5.4E-10 1.8E-14 104.7 4.8 109 2-165 329-440 (455)
9 3err_A Fusion protein of micro 98.9 7.9E-10 2.7E-14 105.6 5.4 105 2-161 413-520 (536)
10 1nj8_A Proline-tRNA synthetase 98.9 2.2E-09 7.6E-14 100.0 7.0 110 2-168 180-290 (459)
11 1qf6_A THRRS, threonyl-tRNA sy 98.9 6.2E-09 2.1E-13 100.7 10.0 118 18-193 453-635 (642)
12 1ses_A Seryl-tRNA synthetase; 98.9 1.7E-09 5.8E-14 100.3 5.3 107 2-162 304-412 (421)
13 4hvc_A Bifunctional glutamate/ 98.8 5.6E-09 1.9E-13 99.4 8.3 112 2-168 202-316 (519)
14 3lss_A Seryl-tRNA synthetase; 98.8 4.3E-09 1.5E-13 99.7 6.9 117 2-168 348-469 (484)
15 2dq3_A Seryl-tRNA synthetase; 98.8 4.6E-09 1.6E-13 97.4 6.3 111 2-166 308-422 (425)
16 3ial_A Prolyl-tRNA synthetase; 98.8 5.4E-09 1.8E-13 99.6 5.2 110 2-169 196-308 (518)
17 3qne_A Seryl-tRNA synthetase, 98.7 1.1E-08 3.9E-13 96.8 4.7 114 2-168 325-444 (485)
18 1hc7_A Prolyl-tRNA synthetase; 98.6 2.6E-08 9E-13 93.3 6.5 108 2-168 184-295 (477)
19 1wle_A Seryl-tRNA synthetase; 98.6 5.7E-08 1.9E-12 92.3 6.6 106 2-162 360-468 (501)
20 1nyr_A Threonyl-tRNA synthetas 98.4 7.7E-07 2.6E-11 85.7 8.7 70 110-193 507-642 (645)
21 3uh0_A Threonyl-tRNA synthetas 98.3 4.1E-07 1.4E-11 85.0 3.9 64 110-187 307-372 (460)
22 2j3l_A Prolyl-tRNA synthetase; 97.8 2E-05 6.9E-10 74.4 6.0 47 110-168 430-478 (572)
23 2i4l_A Proline-tRNA ligase; al 97.7 1.2E-05 3.9E-10 74.6 1.7 66 110-187 325-392 (458)
24 2cja_A Seryl-tRNA synthetase; 97.3 8.5E-05 2.9E-09 70.9 2.1 84 2-136 399-497 (522)
25 3a32_A Probable threonyl-tRNA 97.0 0.00033 1.1E-08 65.0 3.7 41 115-169 305-347 (471)
26 1qe0_A Histidyl-tRNA synthetas 96.3 0.0027 9.1E-08 57.2 4.1 39 113-168 299-337 (420)
27 1h4v_B Histidyl-tRNA synthetas 95.7 0.012 4.1E-07 53.0 5.3 37 115-168 300-336 (421)
28 1htt_A Histidyl-tRNA synthetas 94.8 0.034 1.2E-06 50.0 5.4 38 115-169 299-336 (423)
29 3net_A Histidyl-tRNA synthetas 93.1 0.049 1.7E-06 50.4 3.1 32 121-168 347-379 (465)
30 1wu7_A Histidyl-tRNA synthetas 92.3 0.1 3.5E-06 47.2 4.2 36 115-168 305-340 (434)
31 4e51_A Histidine--tRNA ligase; 89.6 0.26 8.8E-06 45.7 4.0 36 115-168 327-362 (467)
32 4g84_A Histidine--tRNA ligase, 73.0 4.3 0.00015 36.5 5.2 22 169-190 439-460 (464)
33 4g85_A Histidine-tRNA ligase, 68.9 6.1 0.00021 36.5 5.3 22 169-190 492-513 (517)
34 3mf2_A BLL0957 protein; aminoa 60.9 13 0.00045 33.7 5.7 49 2-55 219-281 (346)
No 1
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=4.9e-43 Score=342.35 Aligned_cols=208 Identities=46% Similarity=0.829 Sum_probs=148.9
Q ss_pred ChhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccC-----------cccCCceEEE
Q 044953 1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAH-----------TKFSETREVE 69 (213)
Q Consensus 1 ~~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H-----------~~~~~p~~~~ 69 (213)
+.||.++||+++++|||+|+++||||||.+|||+|+.+++||+||+|||+|++|||++| .++++|++++
T Consensus 360 ~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~ 439 (693)
T 2zt5_A 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVN 439 (693)
T ss_dssp HHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC--------
T ss_pred HHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCccccee
Confidence 36899999999999999999999999999999999999999999999999999999999 4577899999
Q ss_pred EEEEecchhhhhhhhcccHHHHHHHHHhcc--------------------------------cccccccccccceeeeee
Q 044953 70 KLVIAPVKKELGLAFKGSQKNVVEALEKNM--------------------------------LLISKEKKKEHQRVFIPL 117 (213)
Q Consensus 70 ~~~~~~~~~~~g~~fk~~~~~~~~~l~~~~--------------------------------~~~~~~~~~~~~e~~iPh 117 (213)
.+.+.+|++.+|+.|+++++.+.++|.... +.++.+...+.+.+|+|+
T Consensus 440 ~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~ 519 (693)
T 2zt5_A 440 VVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPN 519 (693)
T ss_dssp ------------------------------------------------------------------------CCEEECCE
T ss_pred eeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCc
Confidence 999999999999999999999988876211 111112234578999999
Q ss_pred eeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee-----------------------------
Q 044953 118 VIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL----------------------------- 168 (213)
Q Consensus 118 VIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL----------------------------- 168 (213)
||++|||+||+++++++++|.++ +++++|+.+++|+.+||++|+|+|+
T Consensus 520 Vi~~s~GigRli~aLie~~~~~~---~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~ 596 (693)
T 2zt5_A 520 VIEPSFGLGRIMYTVFEHTFHVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS 596 (693)
T ss_dssp EEEEEEEHHHHHHHHHHHHEEEC---SSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC
T ss_pred ceeCeehHHHHHHHHHHHhcccc---ccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 99999999999999999999877 4556799999999999999999998
Q ss_pred --------------------------------------cCCcccccccHHHHHHHHHHhhcCCccHHHHhhhCCCeeccc
Q 044953 169 --------------------------------------RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSES 210 (213)
Q Consensus 169 --------------------------------------Rds~~QvR~~i~~l~~~i~~l~~~~~~w~~~~~~~p~~~~~~ 210 (213)
|||++|.+++++++.+.|.+++++..+|+++.++||.|++|+
T Consensus 597 ~~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~~~~~w~~~~~~~~~~~~~~ 676 (693)
T 2zt5_A 597 SGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLFEGQE 676 (693)
T ss_dssp CSCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCEEEEETTTHHHHHHHHHTTSSCHHHHHHHSCBCC---
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCceEEEeHHHHHHHHHHHHhCcccHHHHHHhccchhccc
Confidence 799999999999999999999999999999999999999986
Q ss_pred C
Q 044953 211 A 211 (213)
Q Consensus 211 ~ 211 (213)
+
T Consensus 677 ~ 677 (693)
T 2zt5_A 677 T 677 (693)
T ss_dssp -
T ss_pred c
Confidence 5
No 2
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.98 E-value=3.7e-33 Score=262.35 Aligned_cols=124 Identities=11% Similarity=0.079 Sum_probs=102.3
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELG 81 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~g 81 (213)
.||.++||+++++|+++|.++| |.+|||+||.||+||.|++|||||+||||.+|.+.++
T Consensus 229 ~~~~~LGi~~~~~r~~~~~~ee----A~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~~~~~~~----------------- 287 (459)
T 3ikl_A 229 QWWRKFAMSPSNFSSSDCQDEE----GRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNV----------------- 287 (459)
T ss_dssp HHHHHHCSSGGGEEEEEECCSS----SSCEEEEEEECSSCEEEEEEEEEEETHHHHHHSCSCS-----------------
T ss_pred HHHHHhCCChhhEEEeecCchH----HHhhcCeEEEcCCceEEEeeeeccchhhhhccccccC-----------------
Confidence 6899999999999999998877 8999999999999999999999999999999965544
Q ss_pred hhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCC---CCCCcceeEEecCCCC
Q 044953 82 LAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPS---KAGDEQLNVFRFPPLV 158 (213)
Q Consensus 82 ~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~---~~~~~~R~vL~l~p~l 158 (213)
.++... .++++++|+|||||+|++|+++|+|+++|.+++. ++++++|+||+|||.|
T Consensus 288 ---------------~~~~~~------dg~~k~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~L 346 (459)
T 3ikl_A 288 ---------------SKLHGR------DGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCL 346 (459)
T ss_dssp ---------------SSSCCB------SSSCBCCCEEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTT
T ss_pred ---------------ceeEcc------CCCeeeeeEEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCccc
Confidence 233211 2457899999999999999999999999997731 2356789999999999
Q ss_pred CCceEEEee
Q 044953 159 APIKCTVFP 167 (213)
Q Consensus 159 APiKvaVlP 167 (213)
||+||+|++
T Consensus 347 AP~qV~Iii 355 (459)
T 3ikl_A 347 APIKVALDV 355 (459)
T ss_dssp CSCCEEEEE
T ss_pred CCceEEEEe
Confidence 999999993
No 3
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.96 E-value=7.1e-30 Score=238.82 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=133.3
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELG 81 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~g 81 (213)
.||.++||+++++|+++|..++ |.+|+|+|+.+|+||.|+.||++|+||||.+|+++++
T Consensus 219 ~~~~~lgi~~~~~r~~~~~~~~----a~~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~~s~----------------- 277 (454)
T 1g5h_A 219 LWWRKFAMSPSNFSSADCQDEL----GRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNV----------------- 277 (454)
T ss_dssp HHHHTTCSSGGGEEEEEEECTT----SCEEEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCG-----------------
T ss_pred HHHHHcCCCceeEEecCCHHHH----HhcCCCcEEecCCCceEEEEecCCCHHHHHhccCCce-----------------
Confidence 5899999999999999997766 7899999999999999999999999999999977665
Q ss_pred hhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCC---CCCCcceeEEecCCCC
Q 044953 82 LAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPS---KAGDEQLNVFRFPPLV 158 (213)
Q Consensus 82 ~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~---~~~~~~R~vL~l~p~l 158 (213)
.++.+++ .+++++|||||||+||+|+++|+|+|+|.++.. ++++++|++|+|||.|
T Consensus 278 ---------------~~l~y~d------~~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~l 336 (454)
T 1g5h_A 278 ---------------STIQGRD------GRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCL 336 (454)
T ss_dssp ---------------GGSCEEE------TTEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTT
T ss_pred ---------------eeEEEEC------CCCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCccc
Confidence 4555544 356899999999999999999999999986421 2355789999999999
Q ss_pred CCceEEEe-ee--------------------------------------------------------------------c
Q 044953 159 APIKCTVF-PL--------------------------------------------------------------------R 169 (213)
Q Consensus 159 APiKvaVl-PL--------------------------------------------------------------------R 169 (213)
||++|+|+ |. |
T Consensus 337 AP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r 416 (454)
T 1g5h_A 337 APIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSR 416 (454)
T ss_dssp CSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEET
T ss_pred CCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEEC
Confidence 99999999 54 8
Q ss_pred CCcccccccHHHHHHHHHHhhcCCccHHHHhhh
Q 044953 170 DSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSS 202 (213)
Q Consensus 170 ds~~QvR~~i~~l~~~i~~l~~~~~~w~~~~~~ 202 (213)
||++|.+++++++.+.|.+++.+..+|+.+...
T Consensus 417 ~t~eq~~v~l~el~~~l~~~l~~~~~~~~~~~~ 449 (454)
T 1g5h_A 417 DTTMKEMMHISKLRDFLVKYLASASNVAAALDH 449 (454)
T ss_dssp TTCCEEEEETTSHHHHHHHHHHHHHHHHGGGTT
T ss_pred CCCcEEEEEHHHHHHHHHHHHhccchhhhhhcc
Confidence 899999999999999999888888888865443
No 4
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.92 E-value=1e-25 Score=212.63 Aligned_cols=165 Identities=28% Similarity=0.411 Sum_probs=123.6
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELG 81 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~g 81 (213)
.||.++|++...++++++.+++++|||.+|||+|+.+|+||.||+|+++|++|||..|.+..++... ...+.+|+
T Consensus 262 ~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~~~~d~~L~~~~~~~~~~~~-~~~~~~n~---- 336 (505)
T 1ati_A 262 KWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGI-TARVLRNE---- 336 (505)
T ss_dssp HHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCSSTTTTTC-CSCCCCCS----
T ss_pred HHHHHcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhhhcccceecchhhccccccce-eeeecccc----
Confidence 5889999999999999999999999999999999999999999999999999999998653332110 00111222
Q ss_pred hhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCc
Q 044953 82 LAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPI 161 (213)
Q Consensus 82 ~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPi 161 (213)
|. ..++..++. .++++|+|+||++|+|++|+++|+++++|++++. ++++++..+++||.+||+
T Consensus 337 --~~----------~~~~~y~d~----~g~~~y~p~vig~s~GieRli~alle~~~~~~~~-~~gd~~~gl~~p~~laP~ 399 (505)
T 1ati_A 337 --HS----------TQRLAYRDP----ETGKWFVPYVIEPSAGVDRGVLALLAEAFTREEL-PNGEERIVLKLKPQLAPI 399 (505)
T ss_dssp --CC----------CSCCCEECS----SSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEEC-TTSCEEEEECCCGGGCSC
T ss_pred --cc----------eeEEEEEcC----CCCeeecceEEEEeeEHHHHHHHHHHHHhhhccc-ccccccccccCCcccCCc
Confidence 00 023333332 3677899999999999999999999999987632 123358999999999999
Q ss_pred eEEEeeecCCcccccccHHHHHHHHHH
Q 044953 162 KCTVFPLRDSKDQIRVSVDEAASVIKA 188 (213)
Q Consensus 162 KvaVlPLRds~~QvR~~i~~l~~~i~~ 188 (213)
+|+|+|+-++..+...-..+|.+.+++
T Consensus 400 ~v~Vip~~~~~~~~~~~a~~l~~~Lr~ 426 (505)
T 1ati_A 400 KVAVIPLVKNRPEITEYAKRLKARLLA 426 (505)
T ss_dssp SEEEEESCSSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCccHHHHHHHHHHHHHHhc
Confidence 999999965333444444455544443
No 5
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=110.48 Aligned_cols=113 Identities=18% Similarity=0.289 Sum_probs=89.4
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccC-cccCCceEEEEEEEecchh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAH-TKFSETREVEKLVIAPVKK 78 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H-~~~~~p~~~~~~~~~~~~~ 78 (213)
.||.++|++ +|..+.-..+|.++|+.++|+|+.+|. ||.|++.|++.+||+..++ .+|...+
T Consensus 350 ~il~~LGLp---yrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqArr~~iry~~~~------------ 414 (522)
T 3vbb_A 350 EFYQSLGIP---YHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTK------------ 414 (522)
T ss_dssp HHHHHTTCC---EEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESCC-------------
T ss_pred HHHHHcCCc---eEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccceeeeEEcccc------------
Confidence 478999996 788888889999999999999999986 7999999999999999988 3443210
Q ss_pred hhhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeee-ccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCC
Q 044953 79 ELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIE-PSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPL 157 (213)
Q Consensus 79 ~~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIE-PSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~ 157 (213)
+..++.-.+|.+. +..+++|+|.|+||+ |+.. + . +.+|+.
T Consensus 415 -----------------------------~~~~k~~~vhtlNgs~lav~R~l~AiLEn-~q~~------d--G-i~iP~~ 455 (522)
T 3vbb_A 415 -----------------------------KMMDKVEFVHMLNATMCATTRTICAILEN-YQTE------K--G-ITVPEK 455 (522)
T ss_dssp -------------------------------CCCCCBCEEEEEEEEEHHHHHHHHHHH-HBCS------S--E-EECCHH
T ss_pred -----------------------------ccCCCeeeceEEeccchHHHHHHHHHHHh-CCCC------C--C-eecChH
Confidence 0012233556665 557999999999976 5532 1 2 899999
Q ss_pred CCCceE----EEeee
Q 044953 158 VAPIKC----TVFPL 168 (213)
Q Consensus 158 lAPiKv----aVlPL 168 (213)
|+||.. +|+||
T Consensus 456 L~Py~~~~~~~~ip~ 470 (522)
T 3vbb_A 456 LKEFMPPGLQELIPF 470 (522)
T ss_dssp HHTTSCTTSSSEEEC
T ss_pred hcCeeCCCcceEeec
Confidence 999998 89999
No 6
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.02 E-value=9.2e-10 Score=103.80 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=77.2
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCc-eEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHG-WIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKEL 80 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~G-W~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~ 80 (213)
.||..+||+ +|.......|+.++|..+||+|..++.| |.|+..+.+-+++ ++. .
T Consensus 212 ~i~~~Lgl~---~~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~-------~a~--------------~- 266 (501)
T 1nj1_A 212 EFFNSLGIP---YLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQT-------FAR--------------T- 266 (501)
T ss_dssp HHHHHHTCC---CEEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETH-------HHH--------------H-
T ss_pred HHHHHCCCe---EEEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEecccc-------chh--------------h-
Confidence 578999997 7777777789999999999999999887 7888777654433 111 0
Q ss_pred hhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCc-hHHHHHHHHhhhcccCCCCCCcceeEEecCCCCC
Q 044953 81 GLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGI-GRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVA 159 (213)
Q Consensus 81 g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGl-dRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lA 159 (213)
-++.+.++ .++.-.||. +|||+ +|+|.|++++.-. + +. +.+|+.||
T Consensus 267 ----------------~~~ry~~~-----~g~~~~~h~--~g~GigeRli~aliE~~~d-------~--~G-l~~P~~la 313 (501)
T 1nj1_A 267 ----------------FEIKFETP-----EGDHEYVHQ--TCYGLSDRVIASVIAIHGD-------E--SG-LCLPPDVA 313 (501)
T ss_dssp ----------------HTCEEECT-----TSCEEECEE--EEEEECTHHHHHHHHHTCC-------S--SS-EECCTTTS
T ss_pred ----------------cCeEEECC-----CCCEEeeee--ccccHHHHHHHHHHHHcCc-------c--cC-ccCCcccc
Confidence 11212221 133334666 78888 9999999985322 1 22 78999999
Q ss_pred CceEEEeee
Q 044953 160 PIKCTVFPL 168 (213)
Q Consensus 160 PiKvaVlPL 168 (213)
|++|.|+|+
T Consensus 314 P~qV~Iipi 322 (501)
T 1nj1_A 314 AHQVVIVPI 322 (501)
T ss_dssp SCSEEEEEC
T ss_pred CceEEEEEe
Confidence 999999984
No 7
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.99 E-value=1.4e-09 Score=98.73 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=88.8
Q ss_pred cCCccccccccceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhhhhhhcccHHHHHHHHHhc
Q 044953 19 HLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKN 98 (213)
Q Consensus 19 h~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~g~~fk~~~~~~~~~l~~~ 98 (213)
+.+++.|||+. .||+++..++||....|... .+|+|+. .+|
T Consensus 213 ~~~~~~~~y~~-~~d~~~~~~~G~~~~~gt~~-~d~~l~~--------------------~~~----------------- 253 (401)
T 1evl_A 213 YQLGEGAFYGP-KIEFTLYDCLDRAWQCGTVQ-LDFSLPS--------------------RLS----------------- 253 (401)
T ss_dssp EETTCSBTTBC-EEEEEEECTTCCEEEEEEEE-EESSHHH--------------------HTT-----------------
T ss_pred ecCCCccccCC-CcCeEEEecCCCeEEeeeee-ecccccc--------------------ccC-----------------
Confidence 45678999998 59999888899999988543 3454421 111
Q ss_pred ccccccccccccceeeeeeeeeccC--CchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee--------
Q 044953 99 MLLISKEKKKEHQRVFIPLVIEPSF--GIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL-------- 168 (213)
Q Consensus 99 ~~~~~~~~~~~~~e~~iPhVIEPSf--GldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL-------- 168 (213)
..+.+ ..+++.+|.|+..+. |++|++++++++.. + .+|+.+||++|.|+|+
T Consensus 254 ~~y~~-----~~g~~~~p~~~~~~~~GgieRli~~l~e~~~--------~------~~p~~~ap~~v~vi~~~~~~~~~a 314 (401)
T 1evl_A 254 ASYVG-----EDNERKVPVMIHRAILGSMERFIGILTEEFA--------G------FFPTWLAPVQVVIMNITDSQSEYV 314 (401)
T ss_dssp CCEEC-----TTSCEECCEEEEEEEEEEHHHHHHHHHHHHT--------T------CCCTTTCSSCEEEEESSGGGHHHH
T ss_pred CEEEC-----CCCCCcCcEEEEecCCCcHHHHHHHHHHHhC--------C------cCCCCCCCeEEEEEecCHHHHHHH
Confidence 11111 245677999999666 99999999998643 1 4799999999999998
Q ss_pred -------------------------------------------------------cCCcccccccHHHHHHHHHHhhcCC
Q 044953 169 -------------------------------------------------------RDSKDQIRVSVDEAASVIKAVTDGQ 193 (213)
Q Consensus 169 -------------------------------------------------------Rds~~QvR~~i~~l~~~i~~l~~~~ 193 (213)
|+|.+|.+++++++.+.|++++.+.
T Consensus 315 ~~l~~~Lr~~Gi~v~~d~~~~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~~~ 394 (401)
T 1evl_A 315 NELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 394 (401)
T ss_dssp HHHHHHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHhhh
Confidence 8999999999999999998777654
No 8
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.92 E-value=5.4e-10 Score=104.71 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=86.4
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKE 79 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~ 79 (213)
.||.++||+ +|...+..++|.++|+.+||+|+.+|. +|.|+.+|++.+||+-.+
T Consensus 329 ~il~~LGL~---yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR--------------------- 384 (455)
T 2dq0_A 329 ELFQELEIP---YRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARR--------------------- 384 (455)
T ss_dssp HHHHHTTCC---EEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHH---------------------
T ss_pred HHHHHcCCc---eEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhc---------------------
Confidence 578999996 788888889999999999999999985 799999999999997322
Q ss_pred hhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeecc-CCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 80 LGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS-FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 80 ~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPS-fGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
-++.+.++ ..++..++|.+..| +|++|+|.|+|||....+ .+ +.+|+.|
T Consensus 385 -----------------~~iry~~~----~~g~~~~vHtlngs~lav~R~i~allE~~~~~d-------G~--i~iP~~L 434 (455)
T 2dq0_A 385 -----------------LNIRFRDR----TDEKPRYVHTLNSTAIATSRAIVAILENHQEED-------GT--VRIPKVL 434 (455)
T ss_dssp -----------------HTEEEESS----TTSCCEECEEEEEEEEEHHHHHHHHHHHSBCTT-------SC--EECCGGG
T ss_pred -----------------cCcEEecC----CCCcEEEEEEEechHhHHHHHHHHHHHHccCCC-------Cc--EeCChhh
Confidence 12222221 02456799999999 599999999999966522 12 7899999
Q ss_pred CCceEEE
Q 044953 159 APIKCTV 165 (213)
Q Consensus 159 APiKvaV 165 (213)
||++ ++
T Consensus 435 aP~~-g~ 440 (455)
T 2dq0_A 435 WKYT-GF 440 (455)
T ss_dssp HHHH-SC
T ss_pred CCcc-cc
Confidence 9999 63
No 9
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=98.91 E-value=7.9e-10 Score=105.65 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=83.6
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccC-cccCCceEEEEEEEecchh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAH-TKFSETREVEKLVIAPVKK 78 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H-~~~~~p~~~~~~~~~~~~~ 78 (213)
.+|.++|++ +|..+....+|.++|+.++|+|+.+|. ||.|+++|++.+||+..++ .+|..
T Consensus 413 ~i~~~LgLp---yrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~-------------- 475 (536)
T 3err_A 413 EILRLLELP---YRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRD-------------- 475 (536)
T ss_dssp HHHHHTTCC---EEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEEC--------------
T ss_pred HHHHHcCCc---EEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEEC--------------
Confidence 478899997 888899999999999999999999986 7999999999999999988 33322
Q ss_pred hhhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 79 ELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 79 ~~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
+ .++.+|++.+-.++.|++|+|.|+||+ |+.. + .+ +.+|+.|
T Consensus 476 -------------------------~----~~k~~~vhtlngs~~a~~R~l~ailen-~q~~----d--g~--i~iP~~L 517 (536)
T 3err_A 476 -------------------------P----EGRVRYAYTLNNTALATPRILAMLLEN-HQLQ----D--GR--VRVPQAL 517 (536)
T ss_dssp -------------------------T----TSCEEECEEEEEEEEEETHHHHHHHHH-HBCT----T--SC--EECCGGG
T ss_pred -------------------------C----CCCeEeeeEEeccchhHHHHHHHHHHh-cCCC----C--Cc--EeCChhh
Confidence 1 123456555555678999999999976 4432 1 12 8999999
Q ss_pred CCc
Q 044953 159 API 161 (213)
Q Consensus 159 APi 161 (213)
+|+
T Consensus 518 ~py 520 (536)
T 3err_A 518 IPY 520 (536)
T ss_dssp HHH
T ss_pred CCc
Confidence 997
No 10
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.88 E-value=2.2e-09 Score=100.00 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=72.9
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELG 81 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~g 81 (213)
.||..+||+ ++...-.+.|...+|..+||+|+.++.|+..-+|. .++|.++ ++. .
T Consensus 180 ~~~~~LGl~---~~~~~~~~~ek~~ga~~~~~ie~~~~dg~~~e~gt----~~~lg~~--~s~--------------~-- 234 (459)
T 1nj8_A 180 KFFDTLGIP---YLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIAT----VHNLGQN--FSK--------------T-- 234 (459)
T ss_dssp HHHHHHTCC---CEEEEECTTSCCTTCSEEEEEEEECTTSCEEEEEE----EEEEETH--HHH--------------H--
T ss_pred HHHHHCCCc---eEEeecCchhhcCCcccceeEEEEcCCCcEEEEEE----Eeecccc--ccc--------------c--
Confidence 478899997 33332234467779999999999999998766663 3445544 211 0
Q ss_pred hhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCc-hHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCC
Q 044953 82 LAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGI-GRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAP 160 (213)
Q Consensus 82 ~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGl-dRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAP 160 (213)
-++.+.++ .++. ++|..+|||+ +|+|.+++++.- ++ + -+.+||.+||
T Consensus 235 ---------------~~~~Y~~~----~G~~---~~v~~~~~GigeRli~alie~~~-------d~--~-gl~~P~~laP 282 (459)
T 1nj8_A 235 ---------------FEIIFETP----TGDK---DYAYQTCYGISDRVIASIIAIHG-------DE--K-GLILPPIVAP 282 (459)
T ss_dssp ---------------TTCEEECT----TSSE---EECEEEEEEECTHHHHHHHHHHC-------BT--T-BCCCCTTSCS
T ss_pred ---------------cCeEEECC----CCCE---eeeeEeeccHHHHHHHHHHHHhC-------CC--c-eeEcCCcCCC
Confidence 11222221 1222 3456799999 799999998631 11 2 2889999999
Q ss_pred ceEEEeee
Q 044953 161 IKCTVFPL 168 (213)
Q Consensus 161 iKvaVlPL 168 (213)
++|+|+|+
T Consensus 283 ~qv~Iipi 290 (459)
T 1nj8_A 283 IQVVIVPL 290 (459)
T ss_dssp SSEEEEEC
T ss_pred CcEEEEec
Confidence 99999985
No 11
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.87 E-value=6.2e-09 Score=100.75 Aligned_cols=118 Identities=18% Similarity=0.249 Sum_probs=89.5
Q ss_pred ccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhhhhhhcccHHHHHHHHHh
Q 044953 18 QHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEK 97 (213)
Q Consensus 18 qh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~g~~fk~~~~~~~~~l~~ 97 (213)
++.+.|.|||+.. +|+++....||....|... -||+|.. . -
T Consensus 453 ~~~~g~~afygpk-~d~~~~d~~G~~~~~gti~-~df~l~~--------------------r-----------------~ 493 (642)
T 1qf6_A 453 EYQLGEGAFYGPK-IEFTLYDCLDRAWQCGTVQ-LDFSLPS--------------------R-----------------L 493 (642)
T ss_dssp EEETTCSCTTCCE-EEEEEECTTCCEEEEEEEE-EESSHHH--------------------H-----------------T
T ss_pred EEcCCCcccccCc-ccEEEEccCCceEEeeeEE-EeccCCc--------------------c-----------------C
Confidence 3456788999985 8999888899998877431 2444421 0 1
Q ss_pred cccccccccccccceeeeeeeeeccC--CchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee-------
Q 044953 98 NMLLISKEKKKEHQRVFIPLVIEPSF--GIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL------- 168 (213)
Q Consensus 98 ~~~~~~~~~~~~~~e~~iPhVIEPSf--GldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL------- 168 (213)
++.+.+ ..+++..|.+|..+. |++|++.+++||.. + .+|+.|||++|.|+|+
T Consensus 494 ~~~y~~-----~~g~~~~P~~~hrai~G~ieR~i~~liE~~~--------~------~~P~~laP~qv~vipi~~~~~~~ 554 (642)
T 1qf6_A 494 SASYVG-----EDNERKVPVMIHRAILGSMERFIGILTEEFA--------G------FFPTWLAPVQVVIMNITDSQSEY 554 (642)
T ss_dssp TCCEEC-----TTSCEECCEEEEEEEEEEHHHHHHHHHHHHT--------T------CCCTTTCSSCEEEEESSHHHHHH
T ss_pred CCEEEe-----cCCCCcCcEEEEeccCCCHHHHHHHHHHHhc--------C------CCCcccCCceEEEEEeCHHHHHH
Confidence 222222 245567899999555 99999999998742 1 6899999999999999
Q ss_pred --------------------------------------------------------cCCcccccccHHHHHHHHHHhhcC
Q 044953 169 --------------------------------------------------------RDSKDQIRVSVDEAASVIKAVTDG 192 (213)
Q Consensus 169 --------------------------------------------------------Rds~~QvR~~i~~l~~~i~~l~~~ 192 (213)
|+|.+|.+++++++.+.|++++.+
T Consensus 555 a~~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~ 634 (642)
T 1qf6_A 555 VNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 634 (642)
T ss_dssp HHHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 899999999999999999988776
Q ss_pred C
Q 044953 193 Q 193 (213)
Q Consensus 193 ~ 193 (213)
+
T Consensus 635 ~ 635 (642)
T 1qf6_A 635 R 635 (642)
T ss_dssp T
T ss_pred h
Confidence 4
No 12
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=98.85 E-value=1.7e-09 Score=100.33 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=82.7
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKE 79 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~ 79 (213)
.||.++||+ +|...+..++|.++|+.++|+|+.+|. ||.|+++|++.+||+-. .
T Consensus 304 ~il~~LGL~---~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqar-r-------------------- 359 (421)
T 1ses_A 304 EILRLLELP---YRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQAR-R-------------------- 359 (421)
T ss_dssp HHHHHTTCC---EEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHH-H--------------------
T ss_pred HHHHHCCCc---eEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhh-h--------------------
Confidence 578999996 777889999999999999999999875 89999999999999822 1
Q ss_pred hhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCC
Q 044953 80 LGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVA 159 (213)
Q Consensus 80 ~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lA 159 (213)
-++.+.++ .+...++..+..++.|++|+|.|+||+... . ++ -+.+|+.||
T Consensus 360 -----------------~~i~y~~~----~~~~~~vhtlngs~lav~R~l~allE~~~~-~----dG----~i~iP~~L~ 409 (421)
T 1ses_A 360 -----------------ANLRYRDP----EGRVRYAYTLNNTALATPRILAMLLENHQL-Q----DG----RVRVPQALI 409 (421)
T ss_dssp -----------------HTCEEECT----TSCEEECEEEEEEEEEETHHHHHHHHHHBC-T----TS----CEECCGGGH
T ss_pred -----------------hcCEeECC----CCCEEEEEecCCccchHHHHHHHHHHhCCC-C----CC----CEecChhcC
Confidence 12222221 123456655677889999999999999443 2 11 179999999
Q ss_pred Cce
Q 044953 160 PIK 162 (213)
Q Consensus 160 PiK 162 (213)
|++
T Consensus 410 Py~ 412 (421)
T 1ses_A 410 PYM 412 (421)
T ss_dssp HHH
T ss_pred Ccc
Confidence 998
No 13
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=98.83 E-value=5.6e-09 Score=99.40 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=70.7
Q ss_pred hhHHHh-CCCCCCceeeccCCccccccccceeeEEEecC-CceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhh
Q 044953 2 LFLACL-GIDKERLRFRQHLANEMAHYAANCWDAEIECS-HGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKE 79 (213)
Q Consensus 2 ~Fl~~i-Gi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~-~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~ 79 (213)
.|+..+ ||+-- ..+-+ ..|+..+|..+||+|...| .|..--+| |+++|.++ +++.
T Consensus 202 ~i~~~ll~lp~~--~~~~t-~~e~~~Ga~~t~~iEa~~p~~gr~~q~g----T~~~Lg~~--~s~~-------------- 258 (519)
T 4hvc_A 202 QVYEELLAIPVV--KGRKT-EKEKFAGGDYTTTIEAFISASGRAIQGG----TSHHLGQN--FSKM-------------- 258 (519)
T ss_dssp HHHHTTSCCCCE--EEECC-TTTSCTTSSEEEEEEEEETTTTEEEEEE----EEEEEETH--HHHH--------------
T ss_pred HHHHHhcCCcce--eeecC-CccccCCchhheeeeeeeccCCCEEeec----ccccccch--hhhh--------------
Confidence 467776 78652 22223 3456678999999997775 67432223 55566644 3331
Q ss_pred hhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCch-HHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 80 LGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG-RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 80 ~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGld-RilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
-++.+.++. ..+++. +|+++|||++ |+|.+++++.... . -+.+||.|
T Consensus 259 -----------------~~i~y~d~~---~~g~~~--~vh~~~~Gi~~R~l~aliE~~~d~-------~---gl~~P~~l 306 (519)
T 4hvc_A 259 -----------------FEIVFEDPK---IPGEKQ--FAYQNSWGLTTRTIGVMTMVHGDN-------M---GLVLPPRV 306 (519)
T ss_dssp -----------------HTCEEECTT---STTCEE--ECEEEEEEEETHHHHHHHHHHCBT-------T---BCCCCTTT
T ss_pred -----------------cCcEEeccc---cCCCEE--EEEEccccHHHHHHHHHHHHhCcc-------c---cccccccC
Confidence 233333321 022333 6889999995 9998888864431 1 27899999
Q ss_pred CCceEEEeee
Q 044953 159 APIKCTVFPL 168 (213)
Q Consensus 159 APiKvaVlPL 168 (213)
||++|+|+|+
T Consensus 307 aP~qV~Iipi 316 (519)
T 4hvc_A 307 ACVQVVIIPC 316 (519)
T ss_dssp CSCSEEEEEC
T ss_pred CCeEEEEEEe
Confidence 9999999995
No 14
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=98.82 E-value=4.3e-09 Score=99.70 Aligned_cols=117 Identities=15% Similarity=0.287 Sum_probs=91.9
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccC-cccCCceEEEEEEEecchh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAH-TKFSETREVEKLVIAPVKK 78 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H-~~~~~p~~~~~~~~~~~~~ 78 (213)
.+|.++|++ +|.-..-..+|.++|+.++|+|+.+|. ||.|++.|++.+||+..++ .+|..+.
T Consensus 348 ~il~~LGLp---yrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~~iry~~~~------------ 412 (484)
T 3lss_A 348 EFNKSLGLP---YRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNL------------ 412 (484)
T ss_dssp HHHHHHTCC---EEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESSCC------------
T ss_pred HHHHHcCCc---EEEEEcCCcccCCchhheechheecCCCCCeeEEEEecCcccccccccceEEeccc------------
Confidence 478999996 788888899999999999999999976 8999999999999999998 3443210
Q ss_pred hhhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 79 ELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 79 ~~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
. ......+.+|+..+-.++.+++|+|.|+||+ |+.. + . +.+|+.|
T Consensus 413 --------------------~-----~~~~~~~~~~vhtlNgt~~av~R~l~AiLEn-~q~~-----d---G-i~iP~~L 457 (484)
T 3lss_A 413 --------------------R-----GTAAQNVKEYCHMLNGTLCAITRTMCCICEN-YQTE-----E---G-VVIPDVL 457 (484)
T ss_dssp --------------------C---------CCSCEECEEEEEEEEEHHHHHHHHHHH-HBCS-----S---E-EECCGGG
T ss_pred --------------------c-----ccccCCCceeeeEEeccchHHHHHHHHHHHh-cCCC-----C---C-eeCChhh
Confidence 0 0000133567777777889999999999975 5532 1 2 8999999
Q ss_pred CCce--EEEeee
Q 044953 159 APIK--CTVFPL 168 (213)
Q Consensus 159 APiK--vaVlPL 168 (213)
+|+. ..++|+
T Consensus 458 ~pym~g~~~i~~ 469 (484)
T 3lss_A 458 RPYMMGIEMIRF 469 (484)
T ss_dssp GGGTTTCCEEEC
T ss_pred cCccCCcceeec
Confidence 9998 788887
No 15
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.80 E-value=4.6e-09 Score=97.43 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=85.4
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKE 79 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~ 79 (213)
.+|.++|++ +|..++-..+|.++|+.++|+|+.+|- ||.|+.+|++.+||+ +. .
T Consensus 308 ~il~~LGL~---~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfq-------a~--------------r 363 (425)
T 2dq3_A 308 EVLQLLGLP---YRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQ-------AR--------------R 363 (425)
T ss_dssp HHHHHHTCC---EEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHH-------HH--------------H
T ss_pred HHHHHCCCc---eEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccC-------cc--------------c
Confidence 578899997 676778889999999999999999975 999999999999985 11 0
Q ss_pred hhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeecc-CCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 80 LGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS-FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 80 ~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPS-fGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
-++.+.++ .++++.++|.+..| .|++|+|.|+|||....+ + -+++|+.|
T Consensus 364 -----------------~~i~y~~~----~~~k~~~vHtl~Gs~~av~R~i~allE~~~~~~-----G----~i~iP~~L 413 (425)
T 2dq3_A 364 -----------------MNTRFKDS----KTGKNRFVHTLNGSGLAVGRTLAAILENYQQED-----G----SVVVPEVL 413 (425)
T ss_dssp -----------------HTEEEECT----TTCSEEECEEEEEEEEEHHHHHHHHHHHTBCTT-----S----CEECCTTT
T ss_pred -----------------CCeEEECC----CCCeeEEEEEEeccccHHHHHHHHHHHhCCCCC-----C----CEecCccc
Confidence 22333222 12445599999999 799999999998744321 1 17999999
Q ss_pred CCce-EEEe
Q 044953 159 APIK-CTVF 166 (213)
Q Consensus 159 APiK-vaVl 166 (213)
||++ +.++
T Consensus 414 ~P~~~~~~i 422 (425)
T 2dq3_A 414 RDYVGTDVI 422 (425)
T ss_dssp HHHHSCSEE
T ss_pred cCccCcccC
Confidence 9998 6554
No 16
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=98.75 E-value=5.4e-09 Score=99.58 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=72.5
Q ss_pred hhH-HHhCCCCCCceeeccCCccccccccceeeEEEecCCc-eEEEEeeecCcchhhccCcccCCceEEEEEEEecchhh
Q 044953 2 LFL-ACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHG-WIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKE 79 (213)
Q Consensus 2 ~Fl-~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~G-W~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~ 79 (213)
.|+ ..+||+ .+.-...+.|++..|..++|+|+.+|.| ++||. ++++|..+ +++.
T Consensus 196 ~i~~~~LGlp---~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~g-----t~~~Lg~~--~s~r-------------- 251 (518)
T 3ial_A 196 TIFSDELCFK---GQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTA-----GIHNLGQR--FSST-------------- 251 (518)
T ss_dssp HHHTTTTCCC---CEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEE-----EEEEEETH--HHHH--------------
T ss_pred HHHHHhcCCc---EEeeecChhhccCCCccceEEEEEcCCCCEEEEe-----ceecccch--hhhh--------------
Confidence 467 789997 3555555667754455578999999987 55554 44445543 3221
Q ss_pred hhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCc-hHHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 80 LGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGI-GRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 80 ~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGl-dRilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
-++.+.++ .+++-.|| .+|+|+ +|+|.|++|+.-. +. .|.|||.|
T Consensus 252 -----------------f~i~y~d~-----~g~~~~~h--~~~~G~~~R~iaaliE~~~d-------e~---Gl~lP~~L 297 (518)
T 3ial_A 252 -----------------FDILYANK-----ANESVHPY--LTCAGISTRVLACALSIHGD-------SG---GLVLPPLI 297 (518)
T ss_dssp -----------------TTCCEECT-----TCCEECCE--EEEEEEETHHHHHHHHHHCB-------TT---BCCCCGGG
T ss_pred -----------------cCcEEECC-----CCCEeeeE--EeccchHHHHHHHHHHHhCC-------CC---ccccCCcc
Confidence 13333332 23344455 689998 7999888886432 11 38999999
Q ss_pred CCceEEEeeec
Q 044953 159 APIKCTVFPLR 169 (213)
Q Consensus 159 APiKvaVlPLR 169 (213)
||++|+|+|+-
T Consensus 298 AP~qV~IiPi~ 308 (518)
T 3ial_A 298 APIHVVIIPIG 308 (518)
T ss_dssp CSCSEEEEEES
T ss_pred ceEEEEEEEee
Confidence 99999999983
No 17
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=98.67 E-value=1.1e-08 Score=96.82 Aligned_cols=114 Identities=17% Similarity=0.304 Sum_probs=89.2
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccC-cccCCceEEEEEEEecchh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAH-TKFSETREVEKLVIAPVKK 78 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H-~~~~~p~~~~~~~~~~~~~ 78 (213)
.+|.++|++ +|.-..-..+|.++|+.++|+|+.+|. ||.|+++|++.+||.-.++ .+|..+.
T Consensus 325 ~il~~LgLp---yrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~------------ 389 (485)
T 3qne_A 325 EFYQSLGLP---YRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQ------------ 389 (485)
T ss_dssp HHHHHTTCC---EEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC--------------
T ss_pred HHHHHCCCc---EEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEeccc------------
Confidence 478899997 777788889999999999999999986 7999999999999998887 3333210
Q ss_pred hhhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 79 ELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 79 ~~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
......+|+..+-.+..+++|+|.|+||+ |+.. + . +.+|+.|
T Consensus 390 ----------------------------~~~~~~~~vhtlNgt~lav~R~l~AiLEn-~q~~-----d---G-i~iP~~L 431 (485)
T 3qne_A 390 ----------------------------QNQQEKKYVHCLNSTLSATERTICCILEN-YQKE-----D---G-LVIPEVL 431 (485)
T ss_dssp --------------------------------CCCBCEEEEEEEEEHHHHHHHHHHH-SEET-----T---E-EECCHHH
T ss_pred ----------------------------ccCCCceeeEEEecchhHHHHHHHHHHHh-cCCC-----C---c-eecChhh
Confidence 00123467766666778999999999975 6643 1 2 8999999
Q ss_pred CCceE---EEeee
Q 044953 159 APIKC---TVFPL 168 (213)
Q Consensus 159 APiKv---aVlPL 168 (213)
+||.- +++||
T Consensus 432 ~py~~g~~~~i~~ 444 (485)
T 3qne_A 432 RKYIPGEPEFIPY 444 (485)
T ss_dssp HTTSTTCCSEEEC
T ss_pred cCccCCcceEeec
Confidence 99985 88999
No 18
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.65 E-value=2.6e-08 Score=93.33 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=65.2
Q ss_pred hhH-HHhCCCCCCceeeccCCcccccccc--ceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchh
Q 044953 2 LFL-ACLGIDKERLRFRQHLANEMAHYAA--NCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKK 78 (213)
Q Consensus 2 ~Fl-~~iGi~~~~lRfrqh~~~EmAHYA~--dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~ 78 (213)
.|| ..+||+ ++. +..+++.+|+. ++||+|..++.|. |+...+.+.|..+ ++.
T Consensus 184 ~i~~~~Lgl~---~~~--~~~~~~e~~~g~~~~~~ie~~~~dgr----~~~~gt~~~lg~~--~s~-------------- 238 (477)
T 1hc7_A 184 RLAREYAAIP---VIE--GLKTEKEKFAGAVYTTTIEALMKDGK----ALQAGTSHYLGEN--FAR-------------- 238 (477)
T ss_dssp HHHHHHHCCC---CEE--EECCTTTSCTTSSEEEEEEEECTTSC----EEEEEEEEEEETH--HHH--------------
T ss_pred HHHHHhcCCe---EEE--EeCChHHhcCCcccceEEEEEcCCCc----EEEEeeeEEcccc--ccc--------------
Confidence 467 789996 444 44456677766 7999999987652 1111233333222 111
Q ss_pred hhhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCch-HHHHHHHHhhhcccCCCCCCcceeEEecCCC
Q 044953 79 ELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG-RIIYCLYEHSFYTRPSKAGDEQLNVFRFPPL 157 (213)
Q Consensus 79 ~~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGld-RilyalLe~sf~~r~~~~~~~~R~vL~l~p~ 157 (213)
. -++.+.+. .++.-. |..+|||++ |+|.+++++... + + .+.+||.
T Consensus 239 ~-----------------~g~~y~~~-----~G~~~~--~~~~~~GigeRli~~lie~~~d-------~--~-gl~~P~~ 284 (477)
T 1hc7_A 239 A-----------------FDIKFQDR-----DLQVKY--VHTTSWGLSWRFIGAIIMTHGD-------D--R-GLVLPPR 284 (477)
T ss_dssp H-----------------TTCEEECT-----TSCEEE--CEEEEEEEETHHHHHHHHHHCB-------T--T-BCCCCTT
T ss_pred c-----------------cCeEEECC-----CCCEEe--eeEeeccHHHHHHHHHHHHhCc-------c--c-cccCCcc
Confidence 1 12222221 223222 345999995 999999887432 1 1 2689999
Q ss_pred CCCceEEEeee
Q 044953 158 VAPIKCTVFPL 168 (213)
Q Consensus 158 lAPiKvaVlPL 168 (213)
|||++|.|+|+
T Consensus 285 laP~qV~Iipi 295 (477)
T 1hc7_A 285 LAPIQVVIVPI 295 (477)
T ss_dssp TCSCSEEEEEC
T ss_pred cCCceEEEEEc
Confidence 99999999997
No 19
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=98.58 E-value=5.7e-08 Score=92.26 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=83.2
Q ss_pred hhHHHhCCCCCCceeeccCCccccccccceeeEEEecCC--ceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSH--GWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKE 79 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~ 79 (213)
.||.++||+ +|....-..+|.++|+.++|+|+.+|- +|.|+..|++.+||+..+.
T Consensus 360 ~il~~LgLp---yrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~-------------------- 416 (501)
T 1wle_A 360 EILTELGLH---FRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRL-------------------- 416 (501)
T ss_dssp HHHHHTTCC---EEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHH--------------------
T ss_pred HHHHHCCCc---EEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhc--------------------
Confidence 478999997 777788899999999999999999875 5999999999999974432
Q ss_pred hhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeecc-CCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCC
Q 044953 80 LGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPS-FGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLV 158 (213)
Q Consensus 80 ~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPS-fGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~l 158 (213)
++.+.++ .++...||.+..| .|++|+|.|+||+ |+.. ++ -+.+|+.|
T Consensus 417 ------------------~iry~~~-----~gk~~~vHtlngSglav~R~l~alLEn-~q~~----dG----~i~iP~~L 464 (501)
T 1wle_A 417 ------------------HIMFQTE-----AGELQFAHTVNATGCAVPRLLIALLES-YQQK----DG----SVLVPPAL 464 (501)
T ss_dssp ------------------TCEEECS-----SSCEEECEEEEEEEEEHHHHHHHHHHH-HBCT----TS----CEECCGGG
T ss_pred ------------------CcEEECC-----CCCEEEEEEECCccchHHHHHHHHHHh-CCCC----CC----CEeCChhh
Confidence 2222221 2345588999988 5999999999999 5432 11 27799999
Q ss_pred CCce
Q 044953 159 APIK 162 (213)
Q Consensus 159 APiK 162 (213)
||++
T Consensus 465 ~Py~ 468 (501)
T 1wle_A 465 QPYL 468 (501)
T ss_dssp HHHH
T ss_pred cCcc
Confidence 9998
No 20
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.37 E-value=7.7e-07 Score=85.74 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=58.8
Q ss_pred cceeeeeeeeeccC--CchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee-------------------
Q 044953 110 HQRVFIPLVIEPSF--GIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL------------------- 168 (213)
Q Consensus 110 ~~e~~iPhVIEPSf--GldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL------------------- 168 (213)
.+++..|.||+.++ |++|++.+++||.- + .+|+.+||++|.|+|+
T Consensus 507 ~g~~~~P~~ih~~~~GgieR~i~~liE~~~--------~------~~P~~lap~qv~vip~~~~~~~~~a~~i~~~Lr~~ 572 (645)
T 1nyr_A 507 DGEHHRPVVIHRGVVSTMERFVAFLTEETK--------G------AFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQ 572 (645)
T ss_dssp TSCEECCEEEEEEEEEEHHHHHHHHHHHHT--------T------CCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCcEEEEeccCCcHHHHHHHHHHHhc--------C------CCCCCCCCceEEEEEcccHHHHHHHHHHHHHHHhC
Confidence 46678999999654 79999999988732 1 6899999999999998
Q ss_pred ---------------------------------------------cCCcccccccHHHHHHHHHHhhcCC
Q 044953 169 ---------------------------------------------RDSKDQIRVSVDEAASVIKAVTDGQ 193 (213)
Q Consensus 169 ---------------------------------------------Rds~~QvR~~i~~l~~~i~~l~~~~ 193 (213)
|+|.+|.+++++++.+.|.++++++
T Consensus 573 Gi~v~~D~~~~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~ 642 (645)
T 1nyr_A 573 GVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLK 642 (645)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhhh
Confidence 8899999999999999988777643
No 21
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.27 E-value=4.1e-07 Score=84.97 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=46.1
Q ss_pred cceeeeeeeeecc-CC-chHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeeecCCcccccccHHHHHHHHH
Q 044953 110 HQRVFIPLVIEPS-FG-IGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIK 187 (213)
Q Consensus 110 ~~e~~iPhVIEPS-fG-ldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPLRds~~QvR~~i~~l~~~i~ 187 (213)
.+++-.|.||+.+ || ++|+|.+++++. . +++|+.+||++|.|+|+-+..++...-..+|.+.++
T Consensus 307 ~g~~~~P~~ih~~~~Gg~eRli~~Lie~~-~-------------g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr 372 (460)
T 3uh0_A 307 DNSYKRPIMIHRATFGSIERFMALLIDSN-E-------------GRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLR 372 (460)
T ss_dssp TSCEECCEEEEEEEEEEHHHHHHHHHHHH-T-------------TCCCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHH
T ss_pred CCCccCcEEEecCcchHHHHHHHHHHHHc-C-------------CCCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 4677899999974 64 999998888863 1 368999999999999995543334444444444444
No 22
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.81 E-value=2e-05 Score=74.39 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=37.9
Q ss_pred cceeeeeeeeeccCC--chHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee
Q 044953 110 HQRVFIPLVIEPSFG--IGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168 (213)
Q Consensus 110 ~~e~~iPhVIEPSfG--ldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL 168 (213)
++++.+|+| +||| ++|++++++++.... + -+.+|+.+||++|.|+|+
T Consensus 430 ~g~~~~p~~--g~~giGveRli~~l~e~~~d~---------~-g~~~p~~~ap~~v~vi~~ 478 (572)
T 2j3l_A 430 NGREKSVIM--GCYGIGVSRLLSAIVEQNADE---------R-GINWPTGIAPFDLHVVQM 478 (572)
T ss_dssp TSCEEECEE--EEEEEEHHHHHHHHHHHHEET---------T-EECCCTTTSSCSEEEEES
T ss_pred CCcEEeeee--eccccCHHHHHHHHHHhcCcc---------c-CcccCCCcCCeEEEEEec
Confidence 566789988 6887 679999998875531 1 267899999999999997
No 23
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.66 E-value=1.2e-05 Score=74.57 Aligned_cols=66 Identities=18% Similarity=0.360 Sum_probs=43.6
Q ss_pred cceeeeeeeeeccC--CchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeeecCCcccccccHHHHHHHHH
Q 044953 110 HQRVFIPLVIEPSF--GIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIK 187 (213)
Q Consensus 110 ~~e~~iPhVIEPSf--GldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPLRds~~QvR~~i~~l~~~i~ 187 (213)
.++.. | |+..+| |++|++++++++.+.++ . +.+|+.+||++|+|+|+....++.+....++.+.++
T Consensus 325 ~G~~~-p-~~~~gfgiGveRli~al~e~~~d~~---------g-~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr 392 (458)
T 2i4l_A 325 DGTDA-P-IHGGSYGVGVSRLLGAIIEACHDDN---------G-IIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELS 392 (458)
T ss_dssp TSCEE-E-CEEEEEEEEHHHHHHHHHHHSEETT---------E-ECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHH
T ss_pred CCCEe-c-eEEeeecccHHHHHHHHHHhhcccc---------C-CcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 45554 4 334566 57799999999987532 2 679999999999999984222334444444444444
No 24
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.25 E-value=8.5e-05 Score=70.88 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=52.0
Q ss_pred hhHHHhCCCCCCceeeccCCcccccc-------------ccceeeEEEecCC--ceEEEEeeecCcchhhccCcccCCce
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAHY-------------AANCWDAEIECSH--GWIECVGIADRSTYDLHAHTKFSETR 66 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAHY-------------A~dcwD~E~~~~~--GW~E~~GiAdR~~yDL~~H~~~~~p~ 66 (213)
.|+.+|||+ .++ + ...+|| |..++|+|+.+|+ ||.+...|++ ++.|..+..
T Consensus 399 ~~l~~LGLp--~v~---~--~~D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g~~~~~eisS-----~s~~~d~qa-- 464 (522)
T 2cja_A 399 IFNDILDIE--WRK---A--RVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQN-----VSINGDKYP-- 464 (522)
T ss_dssp HHHHTSCCC--EEE---E--EC----------------CCCEEEEEEECCGGGCTTCCCEEEEE-----EEECTTHHH--
T ss_pred HHHHHcCCC--EEe---e--ccCCccccccccccchhccccceEEEEEecccccCCCcEEEEee-----echhhhhcc--
Confidence 477899998 343 2 335788 8999999999997 6555444443 233432222
Q ss_pred EEEEEEEecchhhhhhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhh
Q 044953 67 EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHS 136 (213)
Q Consensus 67 ~~~~~~~~~~~~~~g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~s 136 (213)
+.+-...+ .++ .+|...+++|++|+++|+||+.
T Consensus 465 ------------------------------rr~~Ir~~-----~~~--~vht~~~Glgv~Rli~AlLE~~ 497 (522)
T 2cja_A 465 ------------------------------KGFNVKLQ-----SGD--ELWSGCSGVGLERWAAVFLAQK 497 (522)
T ss_dssp ------------------------------HHHTCEET-----TCC--CEEEEEEEEEHHHHHHHHHHHH
T ss_pred ------------------------------cccceEcC-----CCC--EEEEeccCcHHHHHHHHHHHHc
Confidence 11211111 122 6899999999999999999983
No 25
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.04 E-value=0.00033 Score=65.04 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=32.1
Q ss_pred eeeeee--ccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeeec
Q 044953 115 IPLVIE--PSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLR 169 (213)
Q Consensus 115 iPhVIE--PSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPLR 169 (213)
.|.++. +..|++|++.++|++.- + .+|+.+||++|.|+|+-
T Consensus 305 e~~~i~~~i~GgieRli~~lie~~~--------g------~~p~~~ap~qv~Iip~~ 347 (471)
T 3a32_A 305 EVYIIHRALLGSIERFLGVYLEHRR--------G------RMPFTLAPIQFAVIAVK 347 (471)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHTT--------T------CCCGGGCSCSEEEEEEE
T ss_pred eeEEEeccccCcHHHHHHHHHHHhC--------C------CCCCCcCCceEEEEEcc
Confidence 555564 66799999988888631 1 58999999999999984
No 26
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=96.31 E-value=0.0027 Score=57.15 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=30.1
Q ss_pred eeeeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee
Q 044953 113 VFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168 (213)
Q Consensus 113 ~~iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL 168 (213)
+-+|. +..|+|++|++.++ ++ + + +.+|+ +||++|.|+|+
T Consensus 299 ~~~P~-vg~~igveRl~~~l-e~-~-------~------~~~p~-~~p~~v~i~~~ 337 (420)
T 1qe0_A 299 PSETG-IGFALSIERLLLAL-EE-E-------G------IELDI-EENLDLFIVTM 337 (420)
T ss_dssp CCCEE-EEEEEEHHHHHHHH-HH-T-------T------CCCCC-CCCCSEEEEEC
T ss_pred CCCCE-EEEEecHHHHHHHH-Hh-c-------C------CCCCC-CCCCeEEEEEe
Confidence 45897 59999999999876 54 1 1 13466 89999999998
No 27
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=95.65 E-value=0.012 Score=52.96 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=28.5
Q ss_pred eeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee
Q 044953 115 IPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168 (213)
Q Consensus 115 iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL 168 (213)
+|. +=-|+|++|++.++.+++ .+||..||++|.|.|+
T Consensus 300 ~pa-~Gf~igieRl~~~l~e~~----------------~~~~~~~p~~v~i~~~ 336 (421)
T 1h4v_B 300 VPG-VGFAFGVERVALALEAEG----------------FGLPEEKGPDLYLIPL 336 (421)
T ss_pred CCe-EEEeecHHHHHHHHHhcC----------------cCCCCCCCCeEEEEEC
Confidence 675 468999999999887642 1366669999988887
No 28
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=94.79 E-value=0.034 Score=50.04 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=29.7
Q ss_pred eeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeeec
Q 044953 115 IPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLR 169 (213)
Q Consensus 115 iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPLR 169 (213)
+|.| =-|+|++|++.++.+++. +||..||++|.|+|+-
T Consensus 299 ~pav-Gf~igveRl~~~l~e~~~----------------~~~~~~p~~v~i~~~~ 336 (423)
T 1htt_A 299 TPAV-GFAMGLERLVLLVQAVNP----------------EFKADPVVDIYLVASG 336 (423)
T ss_dssp CCEE-EEEEEHHHHHHHHHHHST----------------TCCCCCSCSEEEEECS
T ss_pred CCeE-EEEecHHHHHHHHHhcCc----------------CCCCCCCCcEEEEEcC
Confidence 6775 688899999999877531 3666799999999973
No 29
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=93.07 E-value=0.049 Score=50.37 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.5
Q ss_pred ccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCC-CCCCceEEEeee
Q 044953 121 PSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPP-LVAPIKCTVFPL 168 (213)
Q Consensus 121 PSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p-~lAPiKvaVlPL 168 (213)
-|+|++|++.++.+++. +|+ .+||++|.|.|+
T Consensus 347 faiGieRli~~L~e~g~----------------~p~~~~~p~~V~Vi~~ 379 (465)
T 3net_A 347 ISIGLTRLISRLLKAGI----------------LNTLPPTPAQVVVVNM 379 (465)
T ss_dssp EEEEHHHHHHHHHHTTS----------------SCCCCSCSCCEEECCS
T ss_pred eeccHHHHHHHHHHcCC----------------CCCcCCCCCeEEEEEc
Confidence 57789999999988532 354 689999999997
No 30
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=92.35 E-value=0.1 Score=47.24 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=25.3
Q ss_pred eeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee
Q 044953 115 IPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168 (213)
Q Consensus 115 iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL 168 (213)
+|.| ==|+|++|++.++.+++.+ +|+ ||++|.|.|+
T Consensus 305 ~pa~-Gf~igveRl~~~l~e~~~~---------------~p~--~p~~v~v~~~ 340 (434)
T 1wu7_A 305 VPAV-GFGMGDAVISLLLKRENVQ---------------IPR--EKKSVYICRV 340 (434)
T ss_dssp CCEE-EEEEEHHHHHHHHHHTTCC---------------CCC--SSCEEEEEEE
T ss_pred CCeE-EEEEcHHHHHHHHHhcCCc---------------cCC--CCCcEEEEEc
Confidence 5643 3677899999888765311 144 8999998987
No 31
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=89.58 E-value=0.26 Score=45.67 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.3
Q ss_pred eeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee
Q 044953 115 IPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168 (213)
Q Consensus 115 iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL 168 (213)
+|-| =.|+|++|++.++.+++. +|.++|++|.|+|+
T Consensus 327 ~Pav-Gfa~gleRl~~~l~~~~~-----------------~~~~~p~~V~Vip~ 362 (467)
T 4e51_A 327 TAAC-GWAMGIERILELLKEEHL-----------------VPEQEGVDVYVVHQ 362 (467)
T ss_dssp CCEE-EEEEEHHHHHHHHHHTTC-----------------CCCCCCCSEEEEEC
T ss_pred CCce-eehHHHHHHHHHHHhcCC-----------------cccCCCCeEEEEEc
Confidence 6644 889999999988876311 23378888888887
No 32
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=73.00 E-value=4.3 Score=36.50 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=14.8
Q ss_pred cCCcccccccHHHHHHHHHHhh
Q 044953 169 RDSKDQIRVSVDEAASVIKAVT 190 (213)
Q Consensus 169 Rds~~QvR~~i~~l~~~i~~l~ 190 (213)
+.|.+|..++++++++.|++..
T Consensus 439 l~tgeq~~v~~~elv~~lk~~l 460 (464)
T 4g84_A 439 VTSREEVDVRREDLVEEIKRRT 460 (464)
T ss_dssp TTTCCEEEEEGGGHHHHHHHHH
T ss_pred CCCCCeEEeeHHHHHHHHHHHh
Confidence 4566777777777777776544
No 33
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=68.94 E-value=6.1 Score=36.52 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=15.0
Q ss_pred cCCcccccccHHHHHHHHHHhh
Q 044953 169 RDSKDQIRVSVDEAASVIKAVT 190 (213)
Q Consensus 169 Rds~~QvR~~i~~l~~~i~~l~ 190 (213)
+.|.+|..++++++++.|++..
T Consensus 492 l~tgeq~~v~~~elv~~lk~~l 513 (517)
T 4g85_A 492 VTSREEVDVRREDLVEEIKRRT 513 (517)
T ss_dssp TTTCCEEEEEHHHHHHHHHHHC
T ss_pred CCCCCeEEeeHHHHHHHHHHHh
Confidence 4567777777777777776543
No 34
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=60.90 E-value=13 Score=33.70 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=33.0
Q ss_pred hhHHHhCCCCCCceeeccCCccccc------------cccceeeEEEecCC--ceEEEEeeecCcchh
Q 044953 2 LFLACLGIDKERLRFRQHLANEMAH------------YAANCWDAEIECSH--GWIECVGIADRSTYD 55 (213)
Q Consensus 2 ~Fl~~iGi~~~~lRfrqh~~~EmAH------------YA~dcwD~E~~~~~--GW~E~~GiAdR~~yD 55 (213)
.+|..+|++ .|- -..+.|-. +|..++|+|+-.|- -|.||.-|++=+||.
T Consensus 219 ~il~~LgLp---yrv--~~~~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfq 281 (346)
T 3mf2_A 219 AIARDLGLT---FRV--DYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHF 281 (346)
T ss_dssp HHHHHTTCC---CEE--EECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHH
T ss_pred HHHHHCCCC---EEE--EEccCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchh
Confidence 467889996 222 22233332 24569999987653 399999999988874
Done!