Query 044955
Match_columns 244
No_of_seqs 109 out of 883
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02946 acyl_WS_DGAT acyltra 100.0 1.7E-34 3.7E-39 266.7 25.1 206 2-225 235-446 (446)
2 PF06974 DUF1298: Protein of u 100.0 5.9E-34 1.3E-38 227.7 18.9 150 72-224 3-153 (153)
3 COG4908 Uncharacterized protei 99.5 4.9E-12 1.1E-16 112.8 17.2 204 3-222 222-437 (439)
4 PRK09294 acyltransferase PapA5 99.1 4.1E-09 8.8E-14 96.8 15.8 192 5-226 218-413 (416)
5 PF07247 AATase: Alcohol acety 99.0 1.1E-07 2.4E-12 88.9 20.4 193 5-205 261-463 (480)
6 PRK12316 peptide synthase; Pro 97.2 0.024 5.3E-07 66.9 19.5 188 6-223 2832-3022(5163)
7 PF00668 Condensation: Condens 97.0 0.0021 4.6E-08 55.0 7.3 69 5-89 232-300 (301)
8 PRK12467 peptide synthase; Pro 97.0 0.046 1E-06 63.4 18.8 191 5-223 282-478 (3956)
9 PRK12467 peptide synthase; Pro 96.9 0.077 1.7E-06 61.6 19.8 188 6-223 1348-1539(3956)
10 PRK05691 peptide synthase; Val 96.5 0.15 3.3E-06 59.7 18.9 189 6-223 1962-2153(4334)
11 PRK12316 peptide synthase; Pro 96.5 0.21 4.5E-06 59.5 19.9 188 6-223 283-476 (5163)
12 PF00198 2-oxoacid_dh: 2-oxoac 95.8 0.32 6.9E-06 41.4 12.9 60 146-214 145-216 (231)
13 PRK11856 branched-chain alpha- 95.7 0.43 9.4E-06 44.0 14.3 35 2-36 219-258 (411)
14 PRK05691 peptide synthase; Val 95.4 1.5 3.3E-05 51.8 20.3 184 6-223 909-1098(4334)
15 PRK10252 entF enterobactin syn 94.6 4.9 0.00011 42.2 19.9 175 13-223 245-425 (1296)
16 TIGR01349 PDHac_trf_mito pyruv 94.3 1.4 3.1E-05 41.0 13.6 35 3-37 239-281 (435)
17 PLN02528 2-oxoisovalerate dehy 93.9 2.7 5.8E-05 39.0 14.5 22 16-37 238-259 (416)
18 PRK05704 dihydrolipoamide succ 93.9 1.9 4.1E-05 39.9 13.4 22 16-37 233-254 (407)
19 PF00755 Carn_acyltransf: Chol 93.8 1.5 3.2E-05 42.5 13.3 184 9-223 394-591 (591)
20 PRK11857 dihydrolipoamide acet 93.8 2.3 5E-05 37.8 13.5 22 16-37 131-152 (306)
21 TIGR01347 sucB 2-oxoglutarate 93.5 2.9 6.3E-05 38.6 14.0 22 16-37 229-250 (403)
22 PLN02744 dihydrolipoyllysine-r 93.3 3.7 8.1E-05 39.3 14.6 22 16-37 364-385 (539)
23 PLN02226 2-oxoglutarate dehydr 93.1 2.4 5.2E-05 39.8 12.8 21 16-36 289-309 (463)
24 TIGR01348 PDHac_trf_long pyruv 91.9 4.1 9E-05 39.1 13.2 21 16-36 372-392 (546)
25 PTZ00144 dihydrolipoamide succ 91.9 5.6 0.00012 36.9 13.5 23 16-38 244-266 (418)
26 PRK11855 dihydrolipoamide acet 91.4 6.3 0.00014 37.9 13.9 22 16-37 373-394 (547)
27 PRK14843 dihydrolipoamide acet 91.4 6.8 0.00015 35.4 13.4 20 16-35 173-192 (347)
28 TIGR02927 SucB_Actino 2-oxoglu 90.8 9.2 0.0002 37.2 14.4 21 16-36 408-428 (590)
29 PLN02663 hydroxycinnamoyl-CoA: 90.6 5.3 0.00011 36.9 12.3 61 17-89 249-309 (431)
30 TIGR03443 alpha_am_amid L-amin 89.8 26 0.00057 37.2 18.1 157 13-222 42-201 (1389)
31 COG1020 EntF Non-ribosomal pep 89.6 20 0.00044 34.5 17.4 93 6-117 7-99 (642)
32 PRK11854 aceF pyruvate dehydro 87.7 18 0.00039 35.5 14.0 22 15-36 458-479 (633)
33 PF02458 Transferase: Transfer 87.5 5.9 0.00013 36.3 10.2 75 4-90 231-312 (432)
34 PLN02481 Omega-hydroxypalmitat 84.0 6.1 0.00013 36.6 8.5 62 17-90 262-323 (436)
35 PLN03157 spermidine hydroxycin 74.8 23 0.00049 32.9 9.2 61 17-89 257-317 (447)
36 PF03869 Arc: Arc-like DNA bin 70.2 10 0.00023 24.0 4.0 29 5-33 16-44 (50)
37 smart00803 TAF TATA box bindin 69.7 13 0.00028 25.0 4.7 36 2-37 2-38 (65)
38 PLN00140 alcohol acetyltransfe 68.0 52 0.0011 30.6 9.9 77 3-89 225-307 (444)
39 PF13443 HTH_26: Cro/C1-type H 66.9 2.6 5.7E-05 27.6 0.8 22 2-23 37-58 (63)
40 PF01402 RHH_1: Ribbon-helix-h 61.1 20 0.00044 20.9 3.9 27 5-31 11-37 (39)
41 KOG3716 Carnitine O-acyltransf 60.4 41 0.0009 33.1 7.6 83 148-231 673-762 (764)
42 PF05534 HicB: HicB family; I 59.7 9.4 0.0002 24.4 2.3 21 6-26 30-50 (51)
43 PRK12270 kgd alpha-ketoglutara 56.0 2.7E+02 0.0058 29.3 13.5 42 16-57 169-219 (1228)
44 COG5435 Uncharacterized conser 50.4 56 0.0012 25.8 5.7 48 178-225 17-65 (147)
45 PHA01513 mnt Mnt 48.0 28 0.0006 24.7 3.3 27 6-32 18-44 (82)
46 COG3655 Predicted transcriptio 47.3 11 0.00024 26.1 1.2 22 2-23 42-63 (73)
47 KOG3719 Carnitine O-acyltransf 46.4 1.3E+02 0.0029 28.8 8.4 80 136-226 552-631 (638)
48 PF08681 DUF1778: Protein of u 45.5 60 0.0013 22.6 4.8 34 6-39 12-45 (80)
49 PHA00687 hypothetical protein 43.5 39 0.00084 21.1 3.1 24 95-118 29-52 (56)
50 PF02599 CsrA: Global regulato 42.3 39 0.00086 21.9 3.2 33 181-213 16-50 (54)
51 PF12651 RHH_3: Ribbon-helix-h 39.0 66 0.0014 19.7 3.7 30 5-34 14-43 (44)
52 PF15429 DUF4628: Domain of un 38.4 19 0.00041 30.8 1.5 19 5-23 48-66 (273)
53 COG0718 Uncharacterized protei 37.1 87 0.0019 23.3 4.7 40 186-225 43-85 (105)
54 PRK03762 hypothetical protein; 37.1 1.2E+02 0.0025 22.5 5.4 42 185-226 42-84 (103)
55 PF01381 HTH_3: Helix-turn-hel 36.0 34 0.00074 21.3 2.2 21 2-22 35-55 (55)
56 KOG3717 Carnitine O-acyltransf 35.6 2.9E+02 0.0063 26.8 8.9 81 136-226 521-603 (612)
57 PF13745 HxxPF_rpt: HxxPF-repe 34.3 1.5E+02 0.0033 20.1 6.6 61 149-211 29-89 (91)
58 PHA01976 helix-turn-helix prot 34.3 36 0.00078 22.2 2.2 21 3-23 42-62 (67)
59 PRK14628 hypothetical protein; 33.8 1.4E+02 0.0029 22.7 5.4 41 186-226 57-98 (118)
60 PF08667 BetR: BetR domain; I 32.9 42 0.00092 26.5 2.6 22 2-23 48-69 (147)
61 PRK14627 hypothetical protein; 32.6 1.4E+02 0.0031 21.8 5.2 42 183-226 38-82 (100)
62 PRK14625 hypothetical protein; 32.4 1.4E+02 0.003 22.4 5.2 41 185-225 39-82 (109)
63 PF11363 DUF3164: Protein of u 32.1 75 0.0016 26.3 4.1 39 184-222 72-113 (195)
64 PRK00587 hypothetical protein; 32.0 1.4E+02 0.003 21.9 5.0 40 186-225 38-80 (99)
65 PF12844 HTH_19: Helix-turn-he 31.9 30 0.00065 22.4 1.4 21 3-23 39-59 (64)
66 PRK14622 hypothetical protein; 30.1 1.8E+02 0.0039 21.4 5.5 40 186-225 39-81 (103)
67 PRK14624 hypothetical protein; 30.0 1.4E+02 0.0031 22.5 5.0 41 185-225 43-86 (115)
68 PRK14629 hypothetical protein; 29.5 1.6E+02 0.0035 21.6 5.0 43 185-227 40-85 (99)
69 PF07498 Rho_N: Rho terminatio 29.3 35 0.00076 20.8 1.3 17 2-18 4-20 (43)
70 PF01476 LysM: LysM domain; I 28.0 55 0.0012 19.2 2.1 19 6-24 7-25 (44)
71 PRK14623 hypothetical protein; 27.9 1.9E+02 0.0041 21.5 5.3 41 185-225 38-79 (106)
72 COG4453 Uncharacterized protei 27.6 1.5E+02 0.0033 21.6 4.5 32 7-38 24-55 (95)
73 cd08313 Death_TNFR1 Death doma 26.7 61 0.0013 22.8 2.3 38 2-39 8-54 (80)
74 PF02037 SAP: SAP domain; Int 26.1 49 0.0011 19.1 1.5 19 2-20 3-21 (35)
75 PF04760 IF2_N: Translation in 25.7 35 0.00075 21.6 0.9 21 7-27 5-25 (54)
76 COG1551 CsrA RNA-binding globa 25.3 1.8E+02 0.0039 20.0 4.3 38 180-217 15-54 (73)
77 PRK06402 rpl12p 50S ribosomal 24.2 1.3E+02 0.0028 22.4 3.7 31 2-32 16-46 (106)
78 PRK00153 hypothetical protein; 24.0 2.4E+02 0.0052 20.5 5.3 43 182-226 39-84 (104)
79 PF07022 Phage_CI_repr: Bacter 23.3 52 0.0011 21.8 1.4 23 2-24 38-60 (66)
80 PRK14621 hypothetical protein; 23.3 2.6E+02 0.0056 20.9 5.3 40 186-225 42-82 (111)
81 PF02575 YbaB_DNA_bd: YbaB/Ebf 23.2 2.5E+02 0.0054 19.6 5.1 45 182-226 31-76 (93)
82 COG3200 AroG 3-deoxy-D-arabino 23.1 55 0.0012 29.8 1.9 57 184-241 126-186 (445)
83 PRK14626 hypothetical protein; 22.3 2.7E+02 0.0058 20.8 5.2 40 186-225 43-85 (110)
84 PF02978 SRP_SPB: Signal pepti 22.1 74 0.0016 23.4 2.2 18 6-23 74-91 (104)
85 PF14824 Sirohm_synth_M: Siroh 21.6 1.7E+02 0.0037 16.6 3.3 27 192-221 3-29 (30)
86 PF13467 RHH_4: Ribbon-helix-h 21.2 1.2E+02 0.0025 20.6 2.7 21 6-26 24-44 (67)
No 1
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=100.00 E-value=1.7e-34 Score=266.73 Aligned_cols=206 Identities=23% Similarity=0.316 Sum_probs=174.5
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEE
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFA 81 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~ 81 (244)
++++++||++++++|+|+|||++||++++|++|+.++|+.+ .+++++.||||+|..+ +...+||.++
T Consensus 235 ~~~~~~l~~~a~~~g~T~ndvllaa~~~al~~~~~~~~~~~-~~~i~~~~pv~~R~~~------------~~~~~~N~~~ 301 (446)
T TIGR02946 235 SLPLADVKAVAKAFGVTINDVVLAAVAGALRRYLEERGELP-DDPLVAMVPVSLRPME------------DDSEGGNQVS 301 (446)
T ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHcCCCC-CCceEEEEeeeccccc------------cCCCCCCEEE
Confidence 57899999999999999999999999999999999888644 4689999999999864 3478999999
Q ss_pred EEEeecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHH---HHHhc-cCCCcceEEeccCC
Q 044955 82 FLHISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAA---KFIHG-SLNNSSLAITNMMG 157 (244)
Q Consensus 82 ~~~v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~-~~~~~t~~~SNvpG 157 (244)
++.+.||++. +||.+||++|+++|+..|++.+....+....++ .++|..+.. +..++ ..+.+|+++||+||
T Consensus 302 ~~~~~l~~~~----~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~SNvpg 376 (446)
T TIGR02946 302 AVLVPLPTGI----ADPVERLSAIHASMTRAKESGQAMGANALLALS-GLLPAPLLRLALRALARKAQRLFNLVISNVPG 376 (446)
T ss_pred EEEecCCCCC----CCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHH-HhccHHHHHHHHHHhhccCCCceeEEEeCCCC
Confidence 9999999864 789999999999999999998886655544433 344543322 22222 12357999999999
Q ss_pred CccceEecCceeeEEeeeecC-CCceEEEEEEEeCCeEEEEEEecCCC-CChhHHHHHHHHHHHHHHHhh
Q 044955 158 PVEKMALANHPIKGLYFMVAG-SPQSLVVTIVTYMGNLRVSLGAEEGF-IDSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 158 p~~~l~~~G~~v~~~~~~~~~-~~~~l~v~v~Sy~~~l~lsv~~d~~~-~d~~~l~~~~~~~l~el~~~a 225 (244)
|..+++++|++|.++++++|. .+++++++++||+|++++++++|+.. +|+++|.++|+++|+||.+++
T Consensus 377 ~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~sy~g~l~~~~~~d~~~~~d~~~l~~~~~~~l~~l~~~~ 446 (446)
T TIGR02946 377 PREPLYLAGAKLDELYPLSPLLDGQGLNITVTSYNGQLDFGLLADRDAVPDPQELADALEAALEELEAAA 446 (446)
T ss_pred CCcccEecCeeEEEeeccccccCCCeEEEEEEecCCeEEEEEeechhhCCCHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999754 57999999999999999999999986 699999999999999998754
No 2
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=100.00 E-value=5.9e-34 Score=227.68 Aligned_cols=150 Identities=30% Similarity=0.508 Sum_probs=134.4
Q ss_pred CCCCCCceEEEEEeecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceE
Q 044955 72 SKAPWGNHFAFLHISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLA 151 (244)
Q Consensus 72 ~~~~~gN~~~~~~v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~ 151 (244)
++..|||+|+++.++||++ ..+||.|||+++++.|++.|++.++...+.+..++..+++.++...+..+..+++|++
T Consensus 3 ~~~~~GN~~~~v~~pL~~~---~~~dpl~rl~~~~~~~~~~K~s~~a~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~v 79 (153)
T PF06974_consen 3 SKARWGNQFGFVLLPLPTA---DPADPLERLRAAKRSMDRKKRSLEAMLSYALLALVPPLLGAKAARALSNRLSPKANLV 79 (153)
T ss_pred CCCCCcceEEEEEeecCcC---CccCHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhccCcceEE
Confidence 6789999999999999985 3589999999999999999999999888888888777777766555555555778999
Q ss_pred EeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCC-CChhHHHHHHHHHHHHHHHh
Q 044955 152 ITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGF-IDSPKLKSCIENAFEMILDA 224 (244)
Q Consensus 152 ~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~-~d~~~l~~~~~~~l~el~~~ 224 (244)
+||||||++++|++|++|+.++++++..+++|+|+++||+|++.||+++|++. ||+++|+++|+++|+||.++
T Consensus 80 iSNVPGP~~~l~~~G~~v~~i~~~~~~~~~~L~itv~SY~g~l~~gi~ad~~~vpD~~~l~~~~~~~l~eL~~A 153 (153)
T PF06974_consen 80 ISNVPGPQEPLYFAGARVEYIYPSPLGDGQALNITVFSYAGKLDFGIVADRDAVPDPQRLADCFEEALEELKEA 153 (153)
T ss_pred EecCCCChhheEECCeeeEEEEeeeecCCcceEEEEEEeCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999877778999999999999999999999986 69999999999999999874
No 3
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=99.45 E-value=4.9e-12 Score=112.75 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=131.9
Q ss_pred cChhHHH---HHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCce
Q 044955 3 FPLHQIK---QIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNH 79 (244)
Q Consensus 3 ~~l~~vk---~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~ 79 (244)
+|.+++| +-++.+|.||||++|||+..---.|-.-+. +....+.+.|||++|+.-+. .+...+|.
T Consensus 222 I~~~ef~~ikay~k~~gaTiNDiilaa~~~fr~~y~~~~~--k~~~~lsi~~~VDlRkyl~s----------k~~sI~Nl 289 (439)
T COG4908 222 IPSDEFKKIKAYAKVHGATINDIILAALLKFRLLYNTTHE--KANNYLSIDMPVDLRKYLPS----------KEESISNL 289 (439)
T ss_pred cCHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhhch--hhcCeeeeceeeehhhhccc----------cccceecc
Confidence 4445544 555667999999999999544344433333 23468999999999997642 23789999
Q ss_pred EEEEEeecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHH---HHHHHhccCCCcceEEeccC
Q 044955 80 FAFLHISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHET---AAKFIHGSLNNSSLAITNMM 156 (244)
Q Consensus 80 ~~~~~v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~t~~~SNvp 156 (244)
.+...+.++.+ +.+|...-+++|+..|+..|.++.++..+++..+++..+-... +.+.+...+-. ..+-||++
T Consensus 290 s~~~~i~I~~d---d~~~fe~t~~~vk~~~~~~k~gl~g~~~~yl~~ilp~~fkr~~~~~~kk~~~~~~~~-g~ssTNiG 365 (439)
T COG4908 290 SSYLTIVINVD---DVTDFEKTLEKVKGIMNPKKIGLAGLYSFYLLGILPLMFKRKLYLKLKKLVEDRFVE-GKSSTNIG 365 (439)
T ss_pred ceeEEEEEecc---ccccHHHHHHHHHhhcCccccCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-cccccccc
Confidence 99999999985 5678888889999999987777766555555443222111111 11122222211 22239995
Q ss_pred CCcc-ceEecCceee-E-Eeeee--cCCCceEEEEEEEeCCeEEEEEEecCCC-CChhHHHHHHHHHHHHHH
Q 044955 157 GPVE-KMALANHPIK-G-LYFMV--AGSPQSLVVTIVTYMGNLRVSLGAEEGF-IDSPKLKSCIENAFEMIL 222 (244)
Q Consensus 157 Gp~~-~l~~~G~~v~-~-~~~~~--~~~~~~l~v~v~Sy~~~l~lsv~~d~~~-~d~~~l~~~~~~~l~el~ 222 (244)
--.+ ..-++|-..+ + +++.| ..+...|+++...|.++|++++.-...- -+.+++.++|...|.++.
T Consensus 366 ~id~~~~~f~g~~~d~~~~~~~p~~~ap~Fpl~~tt~g~~~tLtinf~r~~dk~~~~~~fl~~f~~~l~~~~ 437 (439)
T COG4908 366 IIDEEVPPFGGEAEDTDAFFFGPCKYAPVFPLGVTTYGYKLTLTINFYRTNDKKKITGHFLDLFAKELRETL 437 (439)
T ss_pred ccccccCCcCceecccceEEEeecccCccceeEEEEeccceEEEEEEEeecCcchHHHHHHHHHHhHhHHHh
Confidence 4443 3334554444 1 44555 2334788888999999999999543222 368899999999888763
No 4
>PRK09294 acyltransferase PapA5; Provisional
Probab=99.08 E-value=4.1e-09 Score=96.84 Aligned_cols=192 Identities=10% Similarity=0.013 Sum_probs=121.2
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
.++|++.|++.|+|++++++|+++.++.++.. . + ..++.+.+|||+|...+.. -.....+|.++...
T Consensus 218 ~~~L~~~a~~~~~t~~~~l~Aa~~~~l~r~~~---~-~-~~~i~~~~pv~~R~~l~p~--------~~~~~~~n~~g~~~ 284 (416)
T PRK09294 218 TSSLAAFGRRHRLTVNALVSAAILLAEWQLRR---T-P-HVPLPYVYPVDLRFRLTPP--------VAATEGTNLLGAAT 284 (416)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC---C-C-CCceeeecchhhHhhcCCC--------CCcccceeeEeeee
Confidence 68899999999999999999999999998843 2 1 2568888999999754200 01246789998887
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccC--CCcceEEeccCCCccce
Q 044955 85 ISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSL--NNSSLAITNMMGPVEKM 162 (244)
Q Consensus 85 v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~SNvpGp~~~l 162 (244)
..+.+.. ..++.+.+++++++++...+... +...+... .. . +.... -..++.+||++.-..+-
T Consensus 285 ~~~~~~~---~~sf~ela~~v~~~~~~~l~~~~--v~~~~~~~-----~~-~----~~~~~~~~~~~v~~Snlg~~~~~~ 349 (416)
T PRK09294 285 YLAEIGP---DTDIVDLARAIAATLRADLADGV--IQQSFLHF-----GT-A----FEGTPPGLPPVVFITNLGVAPPMR 349 (416)
T ss_pred eeccccC---CCCHHHHHHHHHHHHhhhhhcce--eeehhhcc-----cc-c----ccCCCCCCCCeEEEecCCcCCCCC
Confidence 7776643 35788888999999886543222 11111111 00 0 01111 11367889995432211
Q ss_pred EecCceeeEEeeee--cCCCceEEEEEEEeCCeEEEEEEecCCCCChhHHHHHHHHHHHHHHHhhh
Q 044955 163 ALANHPIKGLYFMV--AGSPQSLVVTIVTYMGNLRVSLGAEEGFIDSPKLKSCIENAFEMILDAAS 226 (244)
Q Consensus 163 ~~~G~~v~~~~~~~--~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d~~~l~~~~~~~l~el~~~a~ 226 (244)
.-.|-+|.+++.-. .........+++||+|+|.|+++.....++ ...|++++.|..+.+..+
T Consensus 350 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~~~~~~~--~~~~~~~~~~~~~~~~~~ 413 (416)
T PRK09294 350 TPPGLELEDIHSQFYCAISVPIGGYSCGVFAGRLLIEHHGHIAAPG--KSLEAIRELLCTVPSEYG 413 (416)
T ss_pred CCCCeEEEeeeeeeeecccCceeEEEEeeecCceeeeeccCcCCcc--chHHHHHHHHHhhhhhhh
Confidence 12233344333221 111223458999999999999998865444 788888888877765543
No 5
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=98.96 E-value=1.1e-07 Score=88.92 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=115.9
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
+..|++.||+.|+|++-+|.|+++.||.+......... ...+.+.+|||+|+..+... +.......|+.++...
T Consensus 261 ~~~ll~~CR~~~~TlT~~L~al~~~al~~~~~~~~~~~-~~~~~~~~pvnlR~~~p~~~-----~~~~~~~~g~~v~~~~ 334 (480)
T PF07247_consen 261 LKKLLKACRKHGTTLTALLHALIALALSKVQLPKPKSE-KSSFKISTPVNLRRFLPEDS-----ELRDEYSYGNFVGGID 334 (480)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccccccc-CceEEEEeeeeCCCCCCccc-----cccccccceeEEEccc
Confidence 56788899999999999999999999998533322222 35799999999999764210 0001245676666533
Q ss_pred e--ec-ccCCCC-CCCCHHHHHHHHHHHHHHHhhccchh--hHHHHHHHHHhhhcHH-HHHHHHhccCCCcceEEeccCC
Q 044955 85 I--SV-PQLTNA-EVQNPLKFIQKAQEIIQSKRSSFGAY--LTAKLLETVKKLRGHE-TAAKFIHGSLNNSSLAITNMMG 157 (244)
Q Consensus 85 v--~L-p~~~~~-~~~dp~erL~~v~~~~~~~k~~~~~~--~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~t~~~SNvpG 157 (244)
. .+ +..... ..++.-+..+++++++....+..... +.......+..+...+ .+... ....+..+..+||+ |
T Consensus 335 ~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~-~~~~r~~t~evSNL-G 412 (480)
T PF07247_consen 335 FSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSK-IGKPRRSTFEVSNL-G 412 (480)
T ss_pred eeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhh-cCCCCCCcEEEEeC-C
Confidence 3 11 221100 01223455577777776643222221 1111122222221111 11111 12224689999999 5
Q ss_pred CccceEecCceeeEEeeeec-C-CCceEEEEEEEeC-CeEEEEEEecCCCC
Q 044955 158 PVEKMALANHPIKGLYFMVA-G-SPQSLVVTIVTYM-GNLRVSLGAEEGFI 205 (244)
Q Consensus 158 p~~~l~~~G~~v~~~~~~~~-~-~~~~l~v~v~Sy~-~~l~lsv~~d~~~~ 205 (244)
-...-.-++..|.+++|..+ . .+..+.+++.|.+ |-|+++++.-+.+.
T Consensus 413 ~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS~~~G~L~i~~s~~~~~~ 463 (480)
T PF07247_consen 413 VFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVISTKGGGLNISISWQEGIV 463 (480)
T ss_pred cccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEEcCCCceEEEEEEeCCcc
Confidence 44434456678999999953 3 4578999999986 89999999988764
No 6
>PRK12316 peptide synthase; Provisional
Probab=97.19 E-value=0.024 Score=66.87 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=115.9
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEe
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHI 85 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v 85 (244)
+++++.|+++|+|++.+++||++..|++|.. ...+.+.+|++-|.... .....|-++.++-+
T Consensus 2832 ~~L~~~a~~~~vT~~~~l~aA~a~~L~r~tg-------~~dv~iG~pvsgR~~~~-----------~~~~iG~fvntlPl 2893 (5163)
T PRK12316 2832 RELLALARREGVTLFMLLLASFQVLLHRYSG-------QSDIRVGVPIANRNRAE-----------TERLIGFFVNTQVL 2893 (5163)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-------CCceEEEeeecCCCchh-----------HHhhhhheecceeE
Confidence 5789999999999999999999999999964 24689999999996432 23456666666666
Q ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccceEec
Q 044955 86 SVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEKMALA 165 (244)
Q Consensus 86 ~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~ 165 (244)
.+.+. ......+.|++++++.......-...+. .+...+ .+. +.. . ..+-+...++--..+.....+.
T Consensus 2894 rv~l~---~~~t~~~ll~~v~~~~~~~~~hq~~p~~-~iv~~l----~~~--r~~-~-~~plf~~~~~~~~~~~~~~~~~ 2961 (5163)
T PRK12316 2894 RAQVD---AQLAFRDLLGQVKEQALGAQAHQDLPFE-QLVEAL----QPE--RSL-S-HSPLFQVMYNHQSGERAAAQLP 2961 (5163)
T ss_pred EEecC---CCCCHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHh----ccc--ccc-C-CCCceeEEEeeeccccccccCC
Confidence 65553 2356788889999887666443222121 111111 110 000 0 1112333333223333333445
Q ss_pred CceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHH
Q 044955 166 NHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILD 223 (244)
Q Consensus 166 G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~ 223 (244)
|..+..+..........+.+.+.-..+.+.+.+.++..+. ..+++.+.|...|+++.+
T Consensus 2962 ~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~~~~~~~~i~~l~~~f~~lL~~l~~ 3022 (5163)
T PRK12316 2962 GLHIESFAWDGAATQFDLALDTWESAEGLGASLTYATDLFDARTVERLARHWQNLLRGMVE 3022 (5163)
T ss_pred CceeEeeeccCCccceeeEEEEEecCCcEEEEEEECcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5554443222222336788888888888999999998874 456777777777766654
No 7
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=97.04 E-value=0.0021 Score=55.01 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=47.1
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
.+.+++.++++|+|++++++||++.+|++|.. ...+.+.+|++.|..... +.....|+....+-
T Consensus 232 ~~~l~~~a~~~~~t~~~~l~aa~~~~l~~~~~-------~~~~~i~~~~~~R~~~~~---------~~~~~vG~~~~~~P 295 (301)
T PF00668_consen 232 SKRLKEFAKQYGVTPFAVLLAAFALALSRLTG-------QDDVVIGTPVSGRPRSGP---------GFSNTVGPFVNTLP 295 (301)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT-------TSEEEEEEEE---TTTSC---------GGGGS-SS--EEEE
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhhhccc-------cceeeecccccCCCCCCc---------ChhhCeeeEeEEEE
Confidence 45789999999999999999999999999864 246899999999987110 13456777776666
Q ss_pred eeccc
Q 044955 85 ISVPQ 89 (244)
Q Consensus 85 v~Lp~ 89 (244)
+.+.+
T Consensus 296 ~~i~~ 300 (301)
T PF00668_consen 296 VRIDV 300 (301)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 65543
No 8
>PRK12467 peptide synthase; Provisional
Probab=96.96 E-value=0.046 Score=63.38 Aligned_cols=191 Identities=13% Similarity=0.089 Sum_probs=112.0
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
.++|++.|++.|+|++.+++||++..|++|.. ...+.+.+|++-|.... .....|-++.++.
T Consensus 282 ~~~L~~~a~~~g~T~~~vl~aA~a~lL~r~tg-------~~dv~iG~pvsgR~~~~-----------~~~~iG~fiNtlp 343 (3956)
T PRK12467 282 SAGLKALAQREGVTLFMVLLASFQTLLHRYSG-------QSDIRIGVPNANRNRVE-----------TERLIGFFVNTQV 343 (3956)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-------CCCEEEEeccCCCCchh-----------hhcceeeeeeeee
Confidence 35799999999999999999999999999853 24699999999997431 2234555555555
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCC---ccc
Q 044955 85 ISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGP---VEK 161 (244)
Q Consensus 85 v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp---~~~ 161 (244)
+.+.++ ...+..+.|+++++++......-...+. .+...+. +. +......+-+..+++-|.+.. ...
T Consensus 344 lrv~~~---~~~t~~~ll~~v~~~~~~a~~hq~~p~~-~l~~~l~---~~---~~~~~~plf~~~~~~~~~~~~~~~~~~ 413 (3956)
T PRK12467 344 LKAEVD---PQASFLELLQQVKRTALGAQAHQDLPFE-QLVEALQ---PE---RSLSHSPLFQVMFNHQNTATGGRDREG 413 (3956)
T ss_pred eEeecC---CCCCHHHHHHHHHHHHHHHHhcccCCHH-HHHHHhC---CC---CCCCCCCceEEEEEeeccccccccccc
Confidence 555443 2356788889999887766432222121 1111110 00 000011011122233333222 112
Q ss_pred eEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHH
Q 044955 162 MALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILD 223 (244)
Q Consensus 162 l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~ 223 (244)
..+.|..+..+..........+++.+...++.+.+.+.++..+. ..+++.+.|..-|+++.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~~lf~~~~~~~~~~~~~~~l~~~~~ 478 (3956)
T PRK12467 414 AQLPGLTVEELSWARHTAQFDLALDTYESAQGLWAAFTYATDLFEATTIERLATHWRNLLEAIVA 478 (3956)
T ss_pred ccCCCceEEEeecCCCceeeeeEEEEEecCCcEEEEEEEecccCCHHHHHHHHHHHHHHHHHHhh
Confidence 33455555544322222235678888888889999999998864 456666666666666543
No 9
>PRK12467 peptide synthase; Provisional
Probab=96.90 E-value=0.077 Score=61.65 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=110.4
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEe
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHI 85 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v 85 (244)
+.+++.|+++|+|++.+++||++..|.+|.. ...+.+.+|++-|.... .+...|=++..+-+
T Consensus 1348 ~~L~~~a~~~~vT~~~vl~aA~a~lL~r~sg-------~~dvv~G~pvsgR~~~~-----------~~~~vG~fvNtlpl 1409 (3956)
T PRK12467 1348 EGLRALARREGVTLFMLLLASFQTLLHRYSG-------QDDIRVGVPIANRNRAE-----------TEGLIGFFVNTQVL 1409 (3956)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhC-------CCCEEEEecccCCCchh-----------hhcceeeeeeeeEE
Confidence 5789999999999999999999999999864 24699999999997421 12334444444444
Q ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCcc-ceEe
Q 044955 86 SVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVE-KMAL 164 (244)
Q Consensus 86 ~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~-~l~~ 164 (244)
.+.+. ...+..+.|++++++.......-...+. .+... + .+ .+.... .+.+...+..-..+.. ...+
T Consensus 1410 R~~~~---~~~t~~~~l~~v~~~~~~a~~hq~~p~~-~i~~~---l-~~--~r~~~~--~pLFq~~~~~~~~~~~~~~~~ 1477 (3956)
T PRK12467 1410 RAEVD---GQASFQQLLQQVKQAALEAQAHQDLPFE-QLVEA---L-QP--ERSLSH--SPLFQVMFNHQRDDHQAQAQL 1477 (3956)
T ss_pred EEecC---CCCCHHHHHHHHHHHHHHHHhccCCCHH-HHHHH---h-cc--cccCCC--CCceeEEEEeecccccccccC
Confidence 44443 2356778889998887665432221121 11111 1 10 000000 0123333322211111 1334
Q ss_pred cCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHH
Q 044955 165 ANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILD 223 (244)
Q Consensus 165 ~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~ 223 (244)
.|..+..+..-.......+.+.+.-..+.+.+.+.++..+. ..+++.+.|..-|+++.+
T Consensus 1478 ~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~ 1539 (3956)
T PRK12467 1478 PGLSVESLSWESQTAQFDLTLDTYESSEGLQASLTYATDLFEASTIERLAGHWLNLLQGLVA 1539 (3956)
T ss_pred CCceeEeeecCCcccccceEEEEEecCCeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 45444433211112235678888878889999999998874 456677777777766654
No 10
>PRK05691 peptide synthase; Validated
Probab=96.52 E-value=0.15 Score=59.68 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=110.2
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEe
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHI 85 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v 85 (244)
+++++.++++|+|.+-+++||++..|.+|.. ...+.+.+|++-|.... .....|-++..+-+
T Consensus 1962 ~~l~~~a~~~~vT~~~~l~aA~a~lL~r~sg-------~~dvv~G~~vsgR~~~~-----------~~~~vG~fvntlPl 2023 (4334)
T PRK05691 1962 ARVRAFNAQRGLTLFMTMTATLAALLYRYSG-------QRDLRIGAPVANRIRPE-----------SEGLIGAFLNTQVL 2023 (4334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEecccCCCchh-----------hhcceeeeeeeeeE
Confidence 5789999999999999999999999999874 24689999999997421 23445555555555
Q ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccceEec
Q 044955 86 SVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEKMALA 165 (244)
Q Consensus 86 ~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~ 165 (244)
.+.+. ...+..+.|++++++.......-.-.+. .+... + .+. +......+-+..+.+-|.+.. ....+.
T Consensus 2024 rv~~~---~~~t~~~ll~~v~~~~~~~~~hq~~p~~-~iv~~---l-~~~--r~~~~~plf~~~~~~~~~~~~-~~~~~~ 2092 (4334)
T PRK05691 2024 RCQLD---GQMSVSELLEQVRQTVIEGQSHQDLPFD-HLVEA---L-QPP--RSAAYNPLFQVMCNVQRWEFQ-QSRQLA 2092 (4334)
T ss_pred EeecC---CCCCHHHHHHHHHHHHHHHHhcccCCHH-HHHHH---h-ccc--cccCCCCceEEEEEeeccccc-cccCCC
Confidence 55553 2356788889999887665332221121 11111 1 110 000011011112233333211 122334
Q ss_pred CceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCCC---hhHHHHHHHHHHHHHHH
Q 044955 166 NHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFID---SPKLKSCIENAFEMILD 223 (244)
Q Consensus 166 G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d---~~~l~~~~~~~l~el~~ 223 (244)
|..+.....-.......+.+.+...++.+.+.+..+..+.| .+.+.+.|..-|+++.+
T Consensus 2093 ~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~~l~~~~~ 2153 (4334)
T PRK05691 2093 GMTVEYLVNDARATKFDLNLEVTDLDGRLGCCLTYSRDLFDEPRIARMAEHWQNLLEALLG 2153 (4334)
T ss_pred CceeEeecccCCccccceEEEEEecCCcEEEEEEECcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 54443322111122356788888888999999999988754 45666666666666543
No 11
>PRK12316 peptide synthase; Provisional
Probab=96.51 E-value=0.21 Score=59.48 Aligned_cols=188 Identities=10% Similarity=0.065 Sum_probs=113.3
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEe
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHI 85 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v 85 (244)
+.|++.|+++|+|..-+++|+++..|++|.. ...+.+.+|++-|.... .....|-++.++.+
T Consensus 283 ~~l~~~a~~~~~T~~~~llaa~a~lL~~~tg-------~~dv~ig~pvs~R~~~~-----------~~~~vG~f~n~lpl 344 (5163)
T PRK12316 283 EALRGTARRQGLTLFMLLLGAFNVLLHRYSG-------QTDIRVGVPIANRNRAE-----------VEGLIGFFVNTQVL 344 (5163)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEeeeCCCCchh-----------hhcceeeeeeeEEE
Confidence 5799999999999999999999999999863 24689999999997532 23456666666666
Q ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEe--ccCC-Cccce
Q 044955 86 SVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAIT--NMMG-PVEKM 162 (244)
Q Consensus 86 ~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~S--NvpG-p~~~l 162 (244)
.+.+.. ..+..+.|+++++++......-...+. .+... + .. .+-.. ..+.+...+. |... .....
T Consensus 345 r~~~~~---~~tf~~~l~~v~~~~~~a~~hq~~p~~-~iv~~---l-~~---~r~~~-~~plf~~~~~~~~~~~~~~~~~ 412 (5163)
T PRK12316 345 RSVFDG---RTRVATLLAGVKDTVLGAQAHQDLPFE-RLVEA---L-KV---ERSLS-HSPLFQVMYNHQPLVADIEALD 412 (5163)
T ss_pred EEecCC---CCCHHHHHHHHHHHHHHHHHhccCCHH-HHHHH---h-CC---CCCCC-CCCcEEEEEEeecccccccccc
Confidence 665542 356788889999887666443222121 11111 1 00 00000 0112223222 3322 22223
Q ss_pred EecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHH
Q 044955 163 ALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILD 223 (244)
Q Consensus 163 ~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~ 223 (244)
.+.|..+..+-.........+.+.+...+|.+.+.+.++.... ..+++.+.|..-|+++.+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~i~~ 476 (5163)
T PRK12316 413 TVAGLEFGQLEWKSRTTQFDLTLDTYEKGGRLHAALTYATDLFEARTVERMARHWQNLLRGMVE 476 (5163)
T ss_pred cCCCceEEeeccCCCccceeEEEEEEEcCCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 3455555443222122235678888888999999999998864 455566666666665543
No 12
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=95.78 E-value=0.32 Score=41.39 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=33.5
Q ss_pred CCcceEEeccCCCccceEecCceeeEEeeee-cCCCceEEEEEE-----------EeCCeEEEEEEecCCCCChhHHHHH
Q 044955 146 NNSSLAITNMMGPVEKMALANHPIKGLYFMV-AGSPQSLVVTIV-----------TYMGNLRVSLGAEEGFIDSPKLKSC 213 (244)
Q Consensus 146 ~~~t~~~SNvpGp~~~l~~~G~~v~~~~~~~-~~~~~~l~v~v~-----------Sy~~~l~lsv~~d~~~~d~~~l~~~ 213 (244)
...|.++||+ |... +..+.|+. |+...-++++-. .-...+.++++.|+.+.|...-+.+
T Consensus 145 ~g~TftisNl-G~~g--------~~~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~F 215 (231)
T PF00198_consen 145 QGGTFTISNL-GMFG--------VESFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARF 215 (231)
T ss_dssp SS-SEEEEEG-GGTT---------SCEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHH
T ss_pred hccceeeeec-CCCC--------cceeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHH
Confidence 5689999999 4433 33444443 221233444433 2366899999999998876655554
Q ss_pred H
Q 044955 214 I 214 (244)
Q Consensus 214 ~ 214 (244)
+
T Consensus 216 l 216 (231)
T PF00198_consen 216 L 216 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=95.66 E-value=0.43 Score=44.03 Aligned_cols=35 Identities=11% Similarity=0.324 Sum_probs=30.8
Q ss_pred ccChhHHHHHHHHc-----CCchhHHHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNL-----GATLNDVITGTIFLGIRLYMQ 36 (244)
Q Consensus 2 ~~~l~~vk~ia~~~-----g~TvNDvllaa~a~al~~y~~ 36 (244)
++++..+.+.++++ +.|++++++-|++.||.+|=.
T Consensus 219 ~idvt~l~~~~k~~~~~~~~ls~~~~~ikav~~Al~~~P~ 258 (411)
T PRK11856 219 EVDVTALLALRKQLKAIGVKLTVTDFLIKAVALALKKFPE 258 (411)
T ss_pred EEEhHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHhCcH
Confidence 56788888888888 899999999999999998744
No 14
>PRK05691 peptide synthase; Validated
Probab=95.41 E-value=1.5 Score=51.82 Aligned_cols=184 Identities=10% Similarity=0.015 Sum_probs=102.0
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEe
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHI 85 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v 85 (244)
+.++++|++.|+|++.+++||++..|++|.. ...+.+.+|++-|.... .....|-++..+.+
T Consensus 909 ~~L~~~a~~~gvT~~~vl~aa~allL~rytg-------~~dv~~G~~~sgR~~~~-----------~~~~vG~fintlpl 970 (4334)
T PRK05691 909 EALRGLAQAHQATLFMVLLAAFQALLHRYSG-------QGDIRIGVPNANRPRLE-----------TQGLVGFFINTQVL 970 (4334)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-------CCCEEEEecccCCCchh-----------hhcceeeeeeeeeE
Confidence 4689999999999999999999999999964 24689999999996421 12345555555555
Q ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccc-eEe
Q 044955 86 SVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEK-MAL 164 (244)
Q Consensus 86 ~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~-l~~ 164 (244)
.+.+. ...+..+.|++++++...........+. .+...+. . .+....+.+.++.-+.+... ..+
T Consensus 971 r~~~~---~~~t~~~ll~~v~~~~~~a~~h~~~p~~-~i~~~l~----~-------~~~~~lf~~~~~~~~~~~~~~~~~ 1035 (4334)
T PRK05691 971 RAQLD---GRLPFTALLAQVRQATLGAQAHQDLPFE-QLVEALP----Q-------AREQGLFQVMFNHQQRDLSALRRL 1035 (4334)
T ss_pred EEecC---CCCCHHHHHHHHHHHHHHHHhhccCCHH-HHHHHhC----c-------cCCCCceeEEEEcccCCccccccC
Confidence 55443 2356777888888877665432222121 1111110 0 00001122333222111111 112
Q ss_pred cCceeeEEeeee-cCCCceEEEEEEE-eCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHH
Q 044955 165 ANHPIKGLYFMV-AGSPQSLVVTIVT-YMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILD 223 (244)
Q Consensus 165 ~G~~v~~~~~~~-~~~~~~l~v~v~S-y~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~ 223 (244)
.|...... .+. ......+.+.+.. .++.+.+.+.++..+. ..+++.+.|...|+++.+
T Consensus 1036 ~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~~~~ 1098 (4334)
T PRK05691 1036 PGLLAEEL-PWHSREAKFDLQLHSEEDRNGRLTLSFDYAAELFDAATIERLAEHFLALLEQVCE 1098 (4334)
T ss_pred CCceeeee-cccCCcccceEEEEEEECCCCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 22222221 111 1112345555543 3567999999988764 356667777766666543
No 15
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=94.57 E-value=4.9 Score=42.21 Aligned_cols=175 Identities=9% Similarity=0.052 Sum_probs=98.0
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeecccCCC
Q 044955 13 DNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQLTN 92 (244)
Q Consensus 13 ~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~~~~ 92 (244)
.+.|+|.+.+++||++..|.+|.. ...+.+.+|++-|.... .....|-++.++-+.+.+.
T Consensus 245 ~~~~~~~~~~l~aa~~~lL~r~sg-------~~dv~ig~p~sgR~~~~-----------~~~~vG~fvntlplr~~~~-- 304 (1296)
T PRK10252 245 QASGVQRPDLALALVALWLGRLCG-------RMDYAAGFIFMRRLGSA-----------ALTATGPVLNVLPLRVHIA-- 304 (1296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhC-------CCceEEEEEecCCCchh-----------hhcCCCcccceEEEEEecC--
Confidence 345899999999999999999874 24699999999997532 2345666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceE--EeccCCCccceEecCceee
Q 044955 93 AEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLA--ITNMMGPVEKMALANHPIK 170 (244)
Q Consensus 93 ~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~--~SNvpGp~~~l~~~G~~v~ 170 (244)
...+..+.|+++++++....+.....+. .+...+.. .....+.+... +-|.+. ...+.|....
T Consensus 305 -~~~tf~~~l~~~~~~~~~~~~h~~~p~~-~i~~~l~~----------~~~~~~lf~~~~~~~~~~~---~~~~~~~~~~ 369 (1296)
T PRK10252 305 -AQETLPELATRLAAQLKKMRRHQRYDAE-QIVRDSGR----------AAGDEPLFGPVLNIKVFDY---QLDFPGVQAQ 369 (1296)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcC----------ccCCCCceeEEEEeeeccc---ccCcCCccce
Confidence 2356778888888887766443322121 11111110 00000112222 222221 2233333322
Q ss_pred EEeeeecCCCceEEEEEE-EeCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHH
Q 044955 171 GLYFMVAGSPQSLVVTIV-TYMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILD 223 (244)
Q Consensus 171 ~~~~~~~~~~~~l~v~v~-Sy~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~ 223 (244)
..... ......+.+.+. .-++.+.+.+..+.+.- ..+.+.+.|.+.|+++.+
T Consensus 370 ~~~~~-~~~~~dl~l~~~~~~~~~l~~~~~y~~~~f~~~~i~~l~~~~~~ll~~~~~ 425 (1296)
T PRK10252 370 THTLA-TGPVNDLELALFPDEHGGLSIEILANPQRYDEATLIAHAERLKALIAQFAA 425 (1296)
T ss_pred eeecC-CCccCCeEEEEEECCCCcEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 11111 111235666666 34678999999987764 455666666666665543
No 16
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=94.28 E-value=1.4 Score=41.03 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=25.4
Q ss_pred cChhHHHHHHHHc--------CCchhHHHHHHHHHHHHHHHHH
Q 044955 3 FPLHQIKQIKDNL--------GATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 3 ~~l~~vk~ia~~~--------g~TvNDvllaa~a~al~~y~~~ 37 (244)
+++.++.++++++ +.|++++++=|++.||++|=.-
T Consensus 239 vd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~ 281 (435)
T TIGR01349 239 CNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEA 281 (435)
T ss_pred EEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHh
Confidence 4445554444433 6999999999999999998443
No 17
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=93.88 E-value=2.7 Score=39.00 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~ 37 (244)
+.|+|++++-|++.||++|=.-
T Consensus 238 kls~~~~likA~a~aL~~~P~~ 259 (416)
T PLN02528 238 KHTFLPFLIKSLSMALSKYPLL 259 (416)
T ss_pred cccHHHHHHHHHHHHHHhCchh
Confidence 6899999999999999987443
No 18
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=93.86 E-value=1.9 Score=39.92 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=19.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~ 37 (244)
+.|+||+++-|++.||++|=.-
T Consensus 233 kls~~~~likA~a~AL~~~P~~ 254 (407)
T PRK05704 233 KLGFMSFFVKAVVEALKRYPEV 254 (407)
T ss_pred CcCHHHHHHHHHHHHHHhCcHh
Confidence 5999999999999999987443
No 19
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=93.85 E-value=1.5 Score=42.52 Aligned_cols=184 Identities=10% Similarity=0.045 Sum_probs=92.4
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCce--EEEEEee
Q 044955 9 KQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNH--FAFLHIS 86 (244)
Q Consensus 9 k~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~--~~~~~v~ 86 (244)
|..-|+.|++..-++=-|+-.|..+.. |.. ...-=++++|.+.. +.+... .+.-...
T Consensus 394 k~~iK~~~~spDa~iQ~alQLA~~r~~---g~~-----~~tyEs~stR~F~~-------------GRTE~iRs~T~es~~ 452 (591)
T PF00755_consen 394 KDFIKKFKVSPDAFIQMALQLAYYRLH---GKF-----PPTYESASTRHFRH-------------GRTETIRSCTPESLA 452 (591)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHH---SS--------EEEEEE-TTSTT---------------EEEEES--HHHHH
T ss_pred hHhHhcCCCCccHHHHHHHHHHHHHHc---CCc-----chhhhhhhHHHhHh-------------hCCCeeccCCHHHHH
Confidence 455677889888888888888776654 532 23466888998631 111110 1111111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHH----hhccch-hhHHHH--HHHHHhh--hc-HHHHHHHHhccCCCcceEEeccC
Q 044955 87 VPQLTNAEVQNPLKFIQKAQEIIQSK----RSSFGA-YLTAKL--LETVKKL--RG-HETAAKFIHGSLNNSSLAITNMM 156 (244)
Q Consensus 87 Lp~~~~~~~~dp~erL~~v~~~~~~~----k~~~~~-~~~~~~--~~~~~~~--~p-~~~~~~~~~~~~~~~t~~~SNvp 156 (244)
+--.......+..++.+..++..+.. |..... .+...+ +..+++- .+ |.++....+.+.....+..|+++
T Consensus 453 fv~a~~~~~~~~~e~~~ll~~A~~~H~~~~~~a~~G~G~dRHL~~L~~~a~~~~~~~P~lf~d~~~~~~~~~~lsTS~~~ 532 (591)
T PF00755_consen 453 FVKAMDDPSASKEEKRELLRAAVKAHKQYIKEAMRGKGFDRHLFGLRCLAKENGIELPELFSDPAYKRSSNFVLSTSQVP 532 (591)
T ss_dssp HHHHHCTTTS-HHHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHTTSS--HHHHSHHHHHHTS-SEEEEEEE
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhccchhhhccChHHHhcCCceeeccccc
Confidence 10000011234444444444333333 221111 111111 1222221 11 23444444444455667777775
Q ss_pred CCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCC--CChhHHHHHHHHHHHHHHH
Q 044955 157 GPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGF--IDSPKLKSCIENAFEMILD 223 (244)
Q Consensus 157 Gp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~--~d~~~l~~~~~~~l~el~~ 223 (244)
++.- ...+++|..+.|.+|+-.-..+.+.|+|++-..- -|.++|.+.++++|.++.+
T Consensus 533 ~~~~----------~~~gfgpv~~dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~f~~~l~~al~dm~d 591 (591)
T PF00755_consen 533 SPAL----------SGGGFGPVVPDGYGICYNIQPDSISFSISSFKSCPETSSERFAKALEQALRDMRD 591 (591)
T ss_dssp ESSS----------EEEE---SSTTSEEEEEEEESSEEEEEEEEETTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred cccc----------ccccccCCCCcceEEEEEecCCeEEEEEEecCCCCcccHHHHHHHHHHHHHHHhC
Confidence 5432 2344555555677888888899999999997643 4999999999999999864
No 20
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=93.84 E-value=2.3 Score=37.77 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~ 37 (244)
+.|++++++-|++.||++|=.-
T Consensus 131 kls~~~~likA~a~AL~~~P~~ 152 (306)
T PRK11857 131 KLTFLPFIAKAILIALKEFPIF 152 (306)
T ss_pred CCCHHHHHHHHHHHHHHhCcHh
Confidence 5899999999999999998444
No 21
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=93.52 E-value=2.9 Score=38.62 Aligned_cols=22 Identities=0% Similarity=0.120 Sum_probs=19.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~ 37 (244)
+.|+||+++=|++.||++|=.-
T Consensus 229 kls~~~~likA~a~AL~~~P~~ 250 (403)
T TIGR01347 229 KLGFMSFFVKAVVAALKRFPEV 250 (403)
T ss_pred CcCHHHHHHHHHHHHHHhCcHh
Confidence 5899999999999999998443
No 22
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=93.28 E-value=3.7 Score=39.34 Aligned_cols=22 Identities=23% Similarity=0.307 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~ 37 (244)
+.|+||+++=|++.||++|=.-
T Consensus 364 kls~~~~liKA~a~AL~~~P~l 385 (539)
T PLN02744 364 KISVNDLVIKAAALALRKVPQC 385 (539)
T ss_pred ccCHHHHHHHHHHHHHHhCcHh
Confidence 5899999999999999998444
No 23
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=93.12 E-value=2.4 Score=39.84 Aligned_cols=21 Identities=5% Similarity=-0.156 Sum_probs=18.8
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQ 36 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~ 36 (244)
+.|++|+++-|++.||++|=.
T Consensus 289 klS~~~~liKAva~AL~~~P~ 309 (463)
T PLN02226 289 KLGLMSGFIKAAVSALQHQPV 309 (463)
T ss_pred cccHHHHHHHHHHHHHHhCCH
Confidence 589999999999999998744
No 24
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=91.94 E-value=4.1 Score=39.14 Aligned_cols=21 Identities=5% Similarity=0.191 Sum_probs=18.9
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQ 36 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~ 36 (244)
+.|+|++++-|++.||++|=.
T Consensus 372 kls~~~~l~kA~~~AL~~~P~ 392 (546)
T TIGR01348 372 KLTVLHILMKAVAAALKKFPK 392 (546)
T ss_pred cccHHHHHHHHHHHHHHhCCh
Confidence 589999999999999999843
No 25
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=91.87 E-value=5.6 Score=36.92 Aligned_cols=23 Identities=0% Similarity=-0.090 Sum_probs=20.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh
Q 044955 16 GATLNDVITGTIFLGIRLYMQAV 38 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~~ 38 (244)
+.|+||+++=|++.||++|=.-.
T Consensus 244 klS~~~~liKAva~AL~~~P~~N 266 (418)
T PTZ00144 244 KLGFMSAFVKASTIALKKMPIVN 266 (418)
T ss_pred cccHHHHHHHHHHHHHHhChHhh
Confidence 58999999999999999985543
No 26
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=91.41 E-value=6.3 Score=37.86 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=18.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~ 37 (244)
+.|++++++-|++.||.+|=.-
T Consensus 373 k~s~~~~likAv~~al~~~P~l 394 (547)
T PRK11855 373 KLTMLPFFIKAVVAALKEFPVF 394 (547)
T ss_pred CCCHHHHHHHHHHHHHHhCcHh
Confidence 5899999999999999987443
No 27
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=91.41 E-value=6.8 Score=35.44 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=18.3
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYM 35 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~ 35 (244)
++|+||+++=|++.||++|=
T Consensus 173 kls~~~~likA~a~AL~~~P 192 (347)
T PRK14843 173 KTTVTDLLSLAVVKTLMKHP 192 (347)
T ss_pred cccHHHHHHHHHHHHHHhCc
Confidence 69999999999999999873
No 28
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=90.79 E-value=9.2 Score=37.18 Aligned_cols=21 Identities=5% Similarity=0.037 Sum_probs=18.8
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 044955 16 GATLNDVITGTIFLGIRLYMQ 36 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~ 36 (244)
+.|+||+++-|++.||++|=.
T Consensus 408 kls~~~~iiKA~a~AL~~~P~ 428 (590)
T TIGR02927 408 NLTFLPFFAKAVIDALKAHPN 428 (590)
T ss_pred cccHHHHHHHHHHHHHHhCCH
Confidence 589999999999999999844
No 29
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=90.61 E-value=5.3 Score=36.91 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=40.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeeccc
Q 044955 17 ATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQ 89 (244)
Q Consensus 17 ~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~ 89 (244)
+|-+|++.|-+-.++.+-. +..+ .++.++..+||+|...... -+..-.||.+.......+.
T Consensus 249 ~S~~dalsA~lW~~~~rA~---~~~~-~~~~~~~~~vd~R~rl~p~--------lp~~Y~GN~~~~~~~~~~~ 309 (431)
T PLN02663 249 YSSYEMLAGHVWRSACKAR---GLPD-DQETKLYIATDGRSRLRPQ--------LPPGYFGNVIFTATPIAVA 309 (431)
T ss_pred cchHHHHHHHHHhhhhhcc---cCCC-ccceEEEEEecCCcCCCCC--------CCCCcccceEEecccccch
Confidence 7899999888877666543 3333 3678999999999865210 1234578877666554444
No 30
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=89.84 E-value=26 Score=37.23 Aligned_cols=157 Identities=12% Similarity=0.029 Sum_probs=88.9
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeecccCCC
Q 044955 13 DNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQLTN 92 (244)
Q Consensus 13 ~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~~~~ 92 (244)
++.|+|...+++||++..|++|.. ...+.+.+|++.|. |- ++|.+..
T Consensus 42 ~~~~~t~~~~l~aa~~~lL~r~sg-------~~dv~iG~~~~~R~--------------------~~-----lplr~~~- 88 (1389)
T TIGR03443 42 AGGGSTPFIILLAAFAALVYRLTG-------DEDIVLGTSSNKSG--------------------RP-----FVLRLNI- 88 (1389)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHcC-------CCceEEEeeeCCCC--------------------ce-----EEEEecC-
Confidence 788999999999999999999874 24588999997663 21 2232222
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccceEecCceeeEE
Q 044955 93 AEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEKMALANHPIKGL 172 (244)
Q Consensus 93 ~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~G~~v~~~ 172 (244)
....+..+.|+++++++..........+. .+...+.. . +-..+....+.+.+.+.+.... ..+
T Consensus 89 ~~~~t~~~~l~~~~~~~~~~~~h~~~p~~-~i~~~l~~---~----~~~~~~p~lf~~~~~~~~~~~~---------~~~ 151 (1389)
T TIGR03443 89 TPELSFLQLYAKVSEEEKEGASDIGVPFD-ELSEHIQA---A----KKLERTPPLFRLAFQDAPDNQQ---------TTY 151 (1389)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCHH-HHHHHhcc---c----cCCCCCCccEEEEeecCCcccc---------ccc
Confidence 13356777889998887776543332121 12221110 0 0000000112223322221111 111
Q ss_pred eeeecCCCceEEEEEEEeCCeEEEEEEecCCCCC---hhHHHHHHHHHHHHHH
Q 044955 173 YFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFID---SPKLKSCIENAFEMIL 222 (244)
Q Consensus 173 ~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d---~~~l~~~~~~~l~el~ 222 (244)
.......|.+.+.--++.+.+.+.++..+-+ .+.+.+.|..-|+++.
T Consensus 152 ---~~~~~~dl~~~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~f~~lL~~~~ 201 (1389)
T TIGR03443 152 ---STGSTTDLTVFLTPSSPELELSIYYNSLLFSSDRITIVADQLAQLLSAAS 201 (1389)
T ss_pred ---ccCCccceEEEEEecCCcEEEEEEEchhcCCHHHHHHHHHHHHHHHHHHH
Confidence 1112346777777778999999999988744 4555666666665554
No 31
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.61 E-value=20 Score=34.48 Aligned_cols=93 Identities=10% Similarity=0.019 Sum_probs=59.2
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEe
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHI 85 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v 85 (244)
+.+|+.++..|+|++.+++++++.-+.+|.. ...+...+|+.-|..... +.....|=+.....+
T Consensus 7 ~~l~~~~~~~~~t~~~~l~a~~~~~l~r~~~-------~~~~~~g~~~~~r~~~~~---------~~~~~ig~f~n~~~l 70 (642)
T COG1020 7 AALRALAAEHGLTLFMVLLAAFAALLSRWSG-------QEDIVLGLPVAGRPLALP---------DVEQLIGLFANTLPL 70 (642)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-------CCCEEEeeeecCCCcccc---------chHhhccchheeeee
Confidence 4589999999999999999999998888764 245788889777753210 011222222222222
Q ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHhhccc
Q 044955 86 SVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFG 117 (244)
Q Consensus 86 ~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~ 117 (244)
..-.. ......+.++++++++........
T Consensus 71 r~~~~---~~~~~~~~~~~~~~~~~~~~~h~~ 99 (642)
T COG1020 71 RLDIS---GRVTFAELLARLRELALGALEHQD 99 (642)
T ss_pred eeccC---CCCCHHHHHHHHHHHHHHHhhccC
Confidence 22221 124678888988888877754433
No 32
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=87.70 E-value=18 Score=35.49 Aligned_cols=22 Identities=9% Similarity=-0.031 Sum_probs=19.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHH
Q 044955 15 LGATLNDVITGTIFLGIRLYMQ 36 (244)
Q Consensus 15 ~g~TvNDvllaa~a~al~~y~~ 36 (244)
.+.|++++++=|++.||.+|=.
T Consensus 458 ~k~t~~~~likAva~Al~~~P~ 479 (633)
T PRK11854 458 VKITPLVFIMKAVAAALEQMPR 479 (633)
T ss_pred CcccHHHHHHHHHHHHHHhCCH
Confidence 3689999999999999998743
No 33
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=87.46 E-value=5.9 Score=36.26 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHc------C-CchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCC
Q 044955 4 PLHQIKQIKDNL------G-ATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPW 76 (244)
Q Consensus 4 ~l~~vk~ia~~~------g-~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~ 76 (244)
+.+.||+.+.+. + .|-+|++.|-+-.++.+-.... . ....++.++||+|...+. +-+..-.
T Consensus 231 ~~~~l~~lk~~~~~~~~~~~~St~d~l~A~lWr~~~rar~~~---~-~~~~~l~~~vd~R~rl~p--------plp~~Y~ 298 (432)
T PF02458_consen 231 SIEKLKKLKSEALSSSSGKPVSTFDALTALLWRCITRARGLP---S-DETSRLSFAVDCRKRLNP--------PLPEGYF 298 (432)
T ss_dssp HHHHHHHHHHHHSTTTSTT-S-HHHHHHHHHHHHHHHHHCHT---T-TTCEEEEEEEETHHHSSS-----------TTB-
T ss_pred HHHHHHHHhhccccccCCCCCCeeEEEEEehhhhhccccccc---c-ccccccccccccCCCcCC--------Ccceeec
Confidence 366777776554 1 2899999999887777643222 2 245899999999976421 0134568
Q ss_pred CceEEEEEeecccC
Q 044955 77 GNHFAFLHISVPQL 90 (244)
Q Consensus 77 gN~~~~~~v~Lp~~ 90 (244)
||.+.......+.+
T Consensus 299 GN~~~~~~~~~~~~ 312 (432)
T PF02458_consen 299 GNAVFFAFASATAG 312 (432)
T ss_dssp S--EEEEEEEEEHH
T ss_pred CceEeecccccchh
Confidence 99988888887764
No 34
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=84.04 E-value=6.1 Score=36.64 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeecccC
Q 044955 17 ATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQL 90 (244)
Q Consensus 17 ~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~~ 90 (244)
+|-+|++.|-+-.++.+- ++..+ .+...+..+||+|...+.. -+..-.||.+......++.+
T Consensus 262 ~S~~dal~A~iW~~~~rA---~~~~~-~~~~~l~~~vd~R~rl~Pp--------lp~~Y~GN~v~~~~~~~~~~ 323 (436)
T PLN02481 262 CSTFEALTAFVWRARTKA---LKMLP-DQQTKLLFAVDGRSRFNPP--------LPKGYFGNGIVLTNALTTAG 323 (436)
T ss_pred cChHHHHHHHHHHHHHhc---cCCCC-CCeEEEEEEEcCccCCCCC--------CCCCceeeeeeeccccccHH
Confidence 789999999988776653 23333 3678889999999864210 12345788776666666654
No 35
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=74.85 E-value=23 Score=32.94 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeeccc
Q 044955 17 ATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQ 89 (244)
Q Consensus 17 ~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~ 89 (244)
+|-+|++.|-+-.++.+-. +..+ .++.++..+||+|...+. |-+..-.||.+.......+.
T Consensus 257 ~St~dalsA~lWr~~~rAr---~~~~-~~~~~l~~~vd~R~rl~P--------plp~~Y~GN~v~~~~~~~~~ 317 (447)
T PLN03157 257 YTRYETVAGHVWRSACKAR---GHEP-EQPTALGICVDSRSRMQP--------PLPDGYFGNATLDVIAESTS 317 (447)
T ss_pred ccHHHHHHHHHHHHHHHHc---cCCC-CCceEEEEEecCCCCCCC--------CCCCCcccceeeeccchhhH
Confidence 6889999998887776543 3223 367899999999986531 01234578877665554444
No 36
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=70.22 E-value=10 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=23.6
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRL 33 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~ 33 (244)
.+.||..|+..|-|+|.-++.++-.+|.+
T Consensus 16 ~~~lk~~A~~~gRS~NsEIv~~L~~~l~~ 44 (50)
T PF03869_consen 16 KEKLKERAEENGRSMNSEIVQRLEEALKK 44 (50)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 36789999999999999998888777664
No 37
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=69.73 E-value=13 Score=24.99 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=31.4
Q ss_pred ccChhHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGAT-LNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~T-vNDvllaa~a~al~~y~~~ 37 (244)
-+|.+.||++++..|++ ++|-....++..+..++.+
T Consensus 2 ~~p~~~i~ria~~~Gi~ris~~a~~~l~~~~e~rl~~ 38 (65)
T smart00803 2 WLPKETIKDVAESLGIGNLSDEAAKLLAEDVEYRIKE 38 (65)
T ss_pred CCCHHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHH
Confidence 47899999999999999 9999988888888776665
No 38
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=68.01 E-value=52 Score=30.59 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=46.9
Q ss_pred cChhHHHHHHHHc------CCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCC
Q 044955 3 FPLHQIKQIKDNL------GATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPW 76 (244)
Q Consensus 3 ~~l~~vk~ia~~~------g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~ 76 (244)
++-++|.+++++. .+|-.|++.|-+-.++.+-...... . .++.....+||+|.+... |-+..-.
T Consensus 225 fs~~~I~~LK~~~~~~~~~~~S~~e~vsA~iWr~~~rA~~~~~~-~-~~~~~~~~~vn~R~Rl~P--------pLP~~y~ 294 (444)
T PLN00140 225 FDAKAIATLRAKAKSKRVPNPSRIETLSCFIWKCCTAASRSISA-A-PRPSISVHAVNIRQRTKP--------PMSRYSI 294 (444)
T ss_pred ECHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhhhccC-C-CCceEEEEEEeccccCCC--------CCCcccc
Confidence 3445555555542 4788999988888776654432211 1 246788899999986521 0123457
Q ss_pred CceEEEEEeeccc
Q 044955 77 GNHFAFLHISVPQ 89 (244)
Q Consensus 77 gN~~~~~~v~Lp~ 89 (244)
||.+.........
T Consensus 295 GN~i~~~~~~~~~ 307 (444)
T PLN00140 295 GNLFWWALAAADP 307 (444)
T ss_pred cchhhhheecccc
Confidence 8877666555444
No 39
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=66.89 E-value=2.6 Score=27.56 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=15.3
Q ss_pred ccChhHHHHHHHHcCCchhHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvl 23 (244)
.++++.+.++|+.+||+++|++
T Consensus 37 ~~~~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 37 NPSLDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp ---HHHHHHHHHHHT--HHHCT
T ss_pred cccHHHHHHHHHHcCCCHHHHh
Confidence 3678999999999999999864
No 40
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=61.13 E-value=20 Score=20.86 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=21.2
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHH
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGI 31 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al 31 (244)
.+.++++|++.|.|.++++--++..-+
T Consensus 11 ~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 11 YERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357889999999999999877665433
No 41
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=60.44 E-value=41 Score=33.06 Aligned_cols=83 Identities=8% Similarity=0.011 Sum_probs=53.2
Q ss_pred cceEEeccCCCccceEecCceeeEEe---eeecC--CCceEEEEEEEeCCeEEEEEEecCCC--CChhHHHHHHHHHHHH
Q 044955 148 SSLAITNMMGPVEKMALANHPIKGLY---FMVAG--SPQSLVVTIVTYMGNLRVSLGAEEGF--IDSPKLKSCIENAFEM 220 (244)
Q Consensus 148 ~t~~~SNvpGp~~~l~~~G~~v~~~~---~~~~~--~~~~l~v~v~Sy~~~l~lsv~~d~~~--~d~~~l~~~~~~~l~e 220 (244)
--+..|++|--+....-.......+. ++.|. +|.|+.-.+.+ ++.+.|-|++-... .|.++|.+.+.++|.+
T Consensus 673 W~LSTSq~P~~q~~~~d~~~~p~~i~~GggFGpvaddGYGVsY~~~G-~~~I~fHIsSk~Ss~~TDS~Rfg~hl~eal~d 751 (764)
T KOG3716|consen 673 WLLSTSQTPNMQENSFDEDKSPDNISLGGGFGPVADDGYGVSYIFAG-ENAIFFHISSKHSSENTDSHRFGQHLKEALHD 751 (764)
T ss_pred eeecccCCcccchhccCcccCccccccCCccCCccCCCceeEEEEec-CceEEEEeecccccccccHHHHHHHHHHHHHH
Confidence 45777888876632222222233333 33333 34555544444 37888888876554 4999999999999999
Q ss_pred HHHhhhcCCCC
Q 044955 221 ILDAASATPSS 231 (244)
Q Consensus 221 l~~~a~~~~~~ 231 (244)
|++...+.+..
T Consensus 752 i~~Lf~~~~~~ 762 (764)
T KOG3716|consen 752 IADLFEDATAK 762 (764)
T ss_pred HHHHHhhhccc
Confidence 99998765544
No 42
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=59.74 E-value=9.4 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.4
Q ss_pred hHHHHHHHHcCCchhHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGT 26 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa 26 (244)
.+++..|++.|+|+|+.+.-+
T Consensus 30 ~~l~~~A~~~gvSlN~~I~~a 50 (51)
T PF05534_consen 30 RALAEAAAAEGVSLNQWIEEA 50 (51)
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 467788899999999998765
No 43
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=55.96 E-value=2.7e+02 Score=29.30 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhc-------C--CCCCcceEEEEEeeecC
Q 044955 16 GATLNDVITGTIFLGIRLYMQAVN-------Q--ESTNLHSTAVVLLNTRM 57 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~~g-------~--~~~~~~l~~~vPvslR~ 57 (244)
++|+++.+.-|++.||.++-.... . ..-...+.+.+-|++-.
T Consensus 169 KVSFThlI~kAvv~AL~~~P~mNasy~~~DGKp~iv~~~~VNlGiAVdl~~ 219 (1228)
T PRK12270 169 KVSFTHLIGYALVQALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPK 219 (1228)
T ss_pred cccHHHHHHHHHHHHHHhCchhhceeeccCCCceeeccCCcceEEEEecCC
Confidence 799999999999999998743321 1 11124567777777654
No 44
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=50.44 E-value=56 Score=25.79 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=40.8
Q ss_pred CCCceEEEEEEEeCCeEEEEEEecCCCC-ChhHHHHHHHHHHHHHHHhh
Q 044955 178 GSPQSLVVTIVTYMGNLRVSLGAEEGFI-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 178 ~~~~~l~v~v~Sy~~~l~lsv~~d~~~~-d~~~l~~~~~~~l~el~~~a 225 (244)
...+.++|=+.+-+|+-.++|+..++.+ ..+.+.+++.+.++.+.+-.
T Consensus 17 w~DrSvNvf~~~~~gt~~~sfvIsRd~~~~g~~~~~y~~rql~~l~k~L 65 (147)
T COG5435 17 WQDRSVNVFVSGDNGTSGFSFVISRDPLEPGDTFPEYVQRQLALLRKQL 65 (147)
T ss_pred hccceEEEEEecCCCcceeEEEEecCCCCCCCcHHHHHHHHHHHHHhhC
Confidence 4458899999999999999999999875 67888999999998887655
No 45
>PHA01513 mnt Mnt
Probab=48.01 E-value=28 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=24.6
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
++|+..|+.-|.|+|.-+..++..+|.
T Consensus 18 ~rL~~aA~~nGRSmNaeIv~~Le~al~ 44 (82)
T PHA01513 18 EKLKQRAKANGRSLNAELVQIVQDALS 44 (82)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 578899999999999999999998876
No 46
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=47.32 E-value=11 Score=26.06 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.2
Q ss_pred ccChhHHHHHHHHcCCchhHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.++.+-+||+++.|+++|++
T Consensus 42 ~I~~~tL~~iC~~LeCqpgDil 63 (73)
T COG3655 42 AIRLSTLEKICKALECQPGDIL 63 (73)
T ss_pred eeeHHHHHHHHHHcCCChhhee
Confidence 3678889999999999999975
No 47
>KOG3719 consensus Carnitine O-acyltransferase CPT2/YAT1 [Lipid transport and metabolism]
Probab=46.41 E-value=1.3e+02 Score=28.82 Aligned_cols=80 Identities=9% Similarity=0.039 Sum_probs=54.6
Q ss_pred HHHHHHhccCCCcceEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCCChhHHHHHHH
Q 044955 136 TAAKFIHGSLNNSSLAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFIDSPKLKSCIE 215 (244)
Q Consensus 136 ~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d~~~l~~~~~ 215 (244)
++..-.+.++.+.-+..||...|.-. ..++.|.-+.|.+|+-.-.++.+...|++-..- ..++|..+++
T Consensus 552 lf~dp~y~~~~~nvLstStlgn~a~~----------~gGfgPvv~~GFGIGY~I~d~~vg~vVsS~~~q-~~~~f~~~le 620 (638)
T KOG3719|consen 552 LFEDPAYTRMNNNVLSTSTLGNPALT----------AGGFGPVVPNGFGIGYIIKDDQVGAVVSSYKRQ-RGARFMFMLE 620 (638)
T ss_pred hhcCcccccccCceEeeccCCchhhh----------ccCccccccCCcceeeEeecCccceEEeccccc-cHHHHHHHHH
Confidence 44434454556677888888444321 234444445677888888888888888765432 2899999999
Q ss_pred HHHHHHHHhhh
Q 044955 216 NAFEMILDAAS 226 (244)
Q Consensus 216 ~~l~el~~~a~ 226 (244)
.+|+|+.+...
T Consensus 621 ksL~ei~~~~~ 631 (638)
T KOG3719|consen 621 KSLDEIRSYLR 631 (638)
T ss_pred HHHHHHHHHHh
Confidence 99999987765
No 48
>PF08681 DUF1778: Protein of unknown function (DUF1778); InterPro: IPR014795 This entry is represented by Vibrio phage ICP1, Orf50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA. ; PDB: 1Y9B_A.
Probab=45.52 E-value=60 Score=22.60 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=27.4
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhc
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVN 39 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g 39 (244)
+.|++.|...|.|++|+++.+....-.+-+.++.
T Consensus 12 ~li~~AA~~~G~sls~Fi~~aa~~~A~~~i~~~~ 45 (80)
T PF08681_consen 12 ELIERAAALSGVSLSDFILSAALEAAEEVIEEHE 45 (80)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 4577888888999999999999988888777653
No 49
>PHA00687 hypothetical protein
Probab=43.48 E-value=39 Score=21.06 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhccch
Q 044955 95 VQNPLKFIQKAQEIIQSKRSSFGA 118 (244)
Q Consensus 95 ~~dp~erL~~v~~~~~~~k~~~~~ 118 (244)
..||..|++++.+.+.+.|...-+
T Consensus 29 radplarvkaiekatervkrqyph 52 (56)
T PHA00687 29 RADPLARVKAIEKATERVKRQYPH 52 (56)
T ss_pred ccChHHHHHHHHHHHHHHHHhcch
Confidence 389999999999999988765443
No 50
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=42.29 E-value=39 Score=21.88 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=24.6
Q ss_pred ceEEEEEEEe-CCeEEEEEEecCCCC-ChhHHHHH
Q 044955 181 QSLVVTIVTY-MGNLRVSLGAEEGFI-DSPKLKSC 213 (244)
Q Consensus 181 ~~l~v~v~Sy-~~~l~lsv~~d~~~~-d~~~l~~~ 213 (244)
..+.+++.+. +|++++|+.+.+.++ .=+++.+.
T Consensus 16 ~~I~I~Vl~i~~~~VklgI~AP~~v~I~R~Ei~~~ 50 (54)
T PF02599_consen 16 DDIEITVLEISGGQVKLGIDAPKEVPIYREEIYER 50 (54)
T ss_dssp TTEEEEEEEEETTEEEEEEEECTTSEEEEHHHHHH
T ss_pred CCEEEEEEEEcCCEEEEEEECCCCCEEeHHHHHHH
Confidence 3667777777 889999999999885 55555443
No 51
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=39.04 E-value=66 Score=19.70 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=23.1
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y 34 (244)
..+++.++++.|+..++++=-|+-.=|.+|
T Consensus 14 ~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 14 YEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 367899999999999998876665554443
No 52
>PF15429 DUF4628: Domain of unknown function (DUF4628)
Probab=38.36 E-value=19 Score=30.78 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=16.7
Q ss_pred hhHHHHHHHHcCCchhHHH
Q 044955 5 LHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvl 23 (244)
-..+|...|+.|+.|||+|
T Consensus 48 SQHLKNLGKAvGAKVNDfL 66 (273)
T PF15429_consen 48 SQHLKNLGKAVGAKVNDFL 66 (273)
T ss_pred hHHHHHHHHHhhhHHHHHH
Confidence 3578999999999999975
No 53
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.11 E-value=87 Score=23.29 Aligned_cols=40 Identities=18% Similarity=0.085 Sum_probs=27.2
Q ss_pred EEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhh
Q 044955 186 TIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 186 ~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a 225 (244)
+|.=-++.=..+|..|+.+ | |.+-|.|++.+++++-.+.+
T Consensus 43 tV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~aA~ndA~~kv 85 (105)
T COG0718 43 TVTINGKGEVKSVEIDPSLLDPEDKEMLEDLILAAFNDAKKKV 85 (105)
T ss_pred EEEEeCCCcEEEEEeCHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 3333444445566667775 5 78999999999988765554
No 54
>PRK03762 hypothetical protein; Provisional
Probab=37.05 E-value=1.2e+02 Score=22.47 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=31.8
Q ss_pred EEEEEeCCeEEEEEEecCCCC-ChhHHHHHHHHHHHHHHHhhh
Q 044955 185 VTIVTYMGNLRVSLGAEEGFI-DSPKLKSCIENAFEMILDAAS 226 (244)
Q Consensus 185 v~v~Sy~~~l~lsv~~d~~~~-d~~~l~~~~~~~l~el~~~a~ 226 (244)
|.|.--++.-..++..|+.+. |.+.|.|++..++++-.+.+.
T Consensus 42 VkV~~nG~~~i~~i~Id~~ll~D~e~LeDLI~aAiNdA~~k~~ 84 (103)
T PRK03762 42 VSVSANGKGEVIDISIDDSLLEDKESLQILLISAINDVYKMVE 84 (103)
T ss_pred EEEEEEcCceEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444445777777888888876 999999999998887765553
No 55
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=36.02 E-value=34 Score=21.27 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.9
Q ss_pred ccChhHHHHHHHHcCCchhHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDV 22 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDv 22 (244)
..+.+.+.++++.+|+++.++
T Consensus 35 ~~~~~~~~~ia~~l~~~~~~l 55 (55)
T PF01381_consen 35 NPSLDTLKKIAKALGVSPEYL 55 (55)
T ss_dssp TSBHHHHHHHHHHHTSEHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHC
Confidence 357788999999999988763
No 56
>KOG3717 consensus Carnitine O-acyltransferase CRAT [Lipid transport and metabolism]
Probab=35.60 E-value=2.9e+02 Score=26.81 Aligned_cols=81 Identities=9% Similarity=-0.010 Sum_probs=51.6
Q ss_pred HHHHHHhccCCCcceEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCC--CChhHHHHH
Q 044955 136 TAAKFIHGSLNNSSLAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGF--IDSPKLKSC 213 (244)
Q Consensus 136 ~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~--~d~~~l~~~ 213 (244)
++..-.|....++-+..|-||--..- +++++|..+.|-+++-.=-.+++.|++++=+.- .|..+|+..
T Consensus 521 lF~dp~y~~s~~F~lSTSQV~t~~d~----------~m~yGpvv~dGYG~cYNp~~~~i~f~isaf~sc~~Ts~~rfak~ 590 (612)
T KOG3717|consen 521 LFKDPSYAISMHFLLSTSQVPTKTDI----------FMGYGPVVPDGYGCCYNPQEEHIIFAISAFRSCPETSASRFAKY 590 (612)
T ss_pred hhcCcHhhHhheeeeecccCccccce----------eeeecCcCCCCcccccCCCcceEEEEeeccccCccccHHHHHHH
Confidence 33333333334556666777543322 345544434455555555567888888876654 389999999
Q ss_pred HHHHHHHHHHhhh
Q 044955 214 IENAFEMILDAAS 226 (244)
Q Consensus 214 ~~~~l~el~~~a~ 226 (244)
++++|+|+.+...
T Consensus 591 L~~al~dmkdll~ 603 (612)
T KOG3717|consen 591 LEQALDDMRDLLS 603 (612)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987765
No 57
>PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A.
Probab=34.30 E-value=1.5e+02 Score=20.13 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=32.9
Q ss_pred ceEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCCChhHHH
Q 044955 149 SLAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFIDSPKLK 211 (244)
Q Consensus 149 t~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d~~~l~ 211 (244)
..++-|. +...+.++|.+++..-.-.......|.+.+...++.+.+.+..+..+-+.+.+.
T Consensus 29 ~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~Y~~~lf~~~ti~ 89 (91)
T PF13745_consen 29 MFNYQNF--SQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLEYNTDLFSEETIE 89 (91)
T ss_dssp EEEEE------S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEEEETTT--HHHHH
T ss_pred EEEEEec--ccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEEEEhHhCCHHHHh
Confidence 3444444 335567788777654322233447899999999999999999998876655544
No 58
>PHA01976 helix-turn-helix protein
Probab=34.25 E-value=36 Score=22.22 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.2
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.+.+.++++.+|+++++++
T Consensus 42 p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 42 PNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 356778999999999998874
No 59
>PRK14628 hypothetical protein; Provisional
Probab=33.82 E-value=1.4e+02 Score=22.70 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred EEEEeCCeEEEEEEecCCCC-ChhHHHHHHHHHHHHHHHhhh
Q 044955 186 TIVTYMGNLRVSLGAEEGFI-DSPKLKSCIENAFEMILDAAS 226 (244)
Q Consensus 186 ~v~Sy~~~l~lsv~~d~~~~-d~~~l~~~~~~~l~el~~~a~ 226 (244)
.|.--++.--+++..|+.+. |.+.|.|++..++++-.+.+.
T Consensus 57 kV~~nG~~ei~~I~Idp~~l~D~E~LeDLIiaA~NdA~~ka~ 98 (118)
T PRK14628 57 RIVATCDRRVKDIEIDEDLKEDFETLKDLLIAGMNEVMEKIE 98 (118)
T ss_pred EEEEEcCceEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 33334666667777788876 999999999999987655543
No 60
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=32.87 E-value=42 Score=26.51 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=20.1
Q ss_pred ccChhHHHHHHHHcCCchhHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.+.+|+.|++.+|+|+-+++
T Consensus 48 ~ftl~EI~~Ia~~fgvS~d~l~ 69 (147)
T PF08667_consen 48 PFTLEEIKKIAKHFGVSPDELF 69 (147)
T ss_pred CCCHHHHHHHHHHhCcCHHHHH
Confidence 5789999999999999988877
No 61
>PRK14627 hypothetical protein; Provisional
Probab=32.56 E-value=1.4e+02 Score=21.80 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=28.3
Q ss_pred EEEEEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhhh
Q 044955 183 LVVTIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAAS 226 (244)
Q Consensus 183 l~v~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a~ 226 (244)
+.|++. ++.-.+++..|+.+ + |.+.|.|++.+++++-.+.+.
T Consensus 38 VkV~~~--G~~~v~~i~Idp~ll~~ed~e~LeDLI~aA~N~A~~k~~ 82 (100)
T PRK14627 38 ITVKMN--GHREVQSITISPEVVDPDDVEMLQDLLLVAINDASRKAQ 82 (100)
T ss_pred EEEEEE--cCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 344443 55556666677765 5 788899999999887655443
No 62
>PRK14625 hypothetical protein; Provisional
Probab=32.41 E-value=1.4e+02 Score=22.36 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=28.6
Q ss_pred EEEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhh
Q 044955 185 VTIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 185 v~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a 225 (244)
|.|.--++.=.+++..|+.+ + |.+.|.|++.+++++-.+.+
T Consensus 39 VkV~~~G~~~v~~I~Idp~ll~~eD~e~LeDLI~aA~NdA~~k~ 82 (109)
T PRK14625 39 VTVTLMGNGELVRVLMDESLVQPGEGEVIADLIVAAHADAKKKL 82 (109)
T ss_pred EEEEEecCceEEEEEECHHHcCCccHHHHHHHHHHHHHHHHHHH
Confidence 34444556666677778775 5 78899999998888755444
No 63
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.05 E-value=75 Score=26.31 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=24.0
Q ss_pred EEEEEEeCCeEEEEEEecCCC-CC--hhHHHHHHHHHHHHHH
Q 044955 184 VVTIVTYMGNLRVSLGAEEGF-ID--SPKLKSCIENAFEMIL 222 (244)
Q Consensus 184 ~v~v~Sy~~~l~lsv~~d~~~-~d--~~~l~~~~~~~l~el~ 222 (244)
++|+.||.|++.|.+...... -| .+.=.+++.+-|.++.
T Consensus 72 n~Tl~sfDG~~kV~i~~~~~~~Fde~l~~Ak~lIde~l~~w~ 113 (195)
T PF11363_consen 72 NVTLTSFDGRYKVTIAVQDRISFDERLQAAKALIDECLNEWA 113 (195)
T ss_pred cEEEEEeCCCEEEEEEecccCCcChHHHHHHHHHHHHHHHHh
Confidence 778999999999998875443 23 2223344444444443
No 64
>PRK00587 hypothetical protein; Provisional
Probab=32.04 E-value=1.4e+02 Score=21.93 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=27.1
Q ss_pred EEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhh
Q 044955 186 TIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 186 ~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a 225 (244)
.|.--++.=-.++..|+.+ + |.+.|.|++..++++-.+.+
T Consensus 38 kV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aA~NdA~~k~ 80 (99)
T PRK00587 38 LIKIKGNLNIEKIEINKELIDPEDKETLQDMLREAINEAISIT 80 (99)
T ss_pred EEEEEcCccEEEEEECHHHcCCccHHHHHHHHHHHHHHHHHHH
Confidence 3333344444556666664 5 89999999999998876655
No 65
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=31.92 E-value=30 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=15.5
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+...++++|+.+|+++++++
T Consensus 39 ~~~~~l~~i~~~~~v~~~~l~ 59 (64)
T PF12844_consen 39 PSVSTLKKIAEALGVSLDELF 59 (64)
T ss_dssp -BHHHHHHHHHHHTS-HHHHC
T ss_pred CCHHHHHHHHHHhCCCHHHHh
Confidence 567788889999999888764
No 66
>PRK14622 hypothetical protein; Provisional
Probab=30.09 E-value=1.8e+02 Score=21.39 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=27.2
Q ss_pred EEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhh
Q 044955 186 TIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 186 ~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a 225 (244)
.|.--++.=.+.+..|+.+ + |.+.|.|++.+++++-.+.+
T Consensus 39 kV~~nG~~~v~~i~Idp~~l~~ed~e~LeDLI~aA~N~A~~k~ 81 (103)
T PRK14622 39 KVAMNGKCEVTRLTVDPKAVDPNDKAMLEDLVTAAVNAAVEKA 81 (103)
T ss_pred EEEEEcCceEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 3333455556666677765 5 88999999998888754444
No 67
>PRK14624 hypothetical protein; Provisional
Probab=30.04 E-value=1.4e+02 Score=22.47 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=28.6
Q ss_pred EEEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhh
Q 044955 185 VTIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 185 v~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a 225 (244)
|.|.--++.-..++..|+.+ + |.+.|.|++..++++-.+.+
T Consensus 43 VkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aAvNdA~~k~ 86 (115)
T PRK14624 43 VTVTATGEGQITNVFINKQLFDADDNKMLEDLVMAATNDALKKA 86 (115)
T ss_pred EEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 44444555566677777775 5 89999999998888754444
No 68
>PRK14629 hypothetical protein; Provisional
Probab=29.53 E-value=1.6e+02 Score=21.58 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=29.9
Q ss_pred EEEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhhhc
Q 044955 185 VTIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAASA 227 (244)
Q Consensus 185 v~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a~~ 227 (244)
|.|.--++.-..++..|+.+ | |.+.|.|++..++++-.+-+.+
T Consensus 40 VkV~~nG~~~v~~i~Idp~lld~eD~e~LeDLI~aAvNdA~~k~~e 85 (99)
T PRK14629 40 VVVEMNGEFNVKKVSIKEEFFDDLDNEALEHMIKSAFNDAVSKVKE 85 (99)
T ss_pred EEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556677778775 5 7999999999998877655543
No 69
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=29.35 E-value=35 Score=20.79 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=12.8
Q ss_pred ccChhHHHHHHHHcCCc
Q 044955 2 TFPLHQIKQIKDNLGAT 18 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~T 18 (244)
..++.+++.+|+.+|++
T Consensus 4 ~~~~~eL~~iAk~lgI~ 20 (43)
T PF07498_consen 4 SMTLSELREIAKELGIE 20 (43)
T ss_dssp CS-HHHHHHHHHCTT-T
T ss_pred cCCHHHHHHHHHHcCCC
Confidence 36789999999999874
No 70
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=27.96 E-value=55 Score=19.24 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=13.4
Q ss_pred hHHHHHHHHcCCchhHHHH
Q 044955 6 HQIKQIKDNLGATLNDVIT 24 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvll 24 (244)
|.+..||+++|+|+.++.-
T Consensus 7 Dtl~~IA~~~~~~~~~l~~ 25 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELME 25 (44)
T ss_dssp --HHHHHHHTTS-HHHHHH
T ss_pred CcHHHHHhhhhhhHhHHHH
Confidence 5678899999999988753
No 71
>PRK14623 hypothetical protein; Provisional
Probab=27.87 E-value=1.9e+02 Score=21.46 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=27.8
Q ss_pred EEEEEeCCeEEEEEEecCCCC-ChhHHHHHHHHHHHHHHHhh
Q 044955 185 VTIVTYMGNLRVSLGAEEGFI-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 185 v~v~Sy~~~l~lsv~~d~~~~-d~~~l~~~~~~~l~el~~~a 225 (244)
|.|.--++.=.+++..|+.+. |.+.|.|++.+++.+-.+.+
T Consensus 38 VkVt~~G~~~i~~i~Idp~~l~D~E~LeDLI~aAvn~A~~k~ 79 (106)
T PRK14623 38 LKVTVTANREIKSISIDDELLEDKEQLEDYLVLTLNKAIEKA 79 (106)
T ss_pred EEEEEEcCccEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666677765 89999999998888755444
No 72
>COG4453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.58 E-value=1.5e+02 Score=21.59 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 044955 7 QIKQIKDNLGATLNDVITGTIFLGIRLYMQAV 38 (244)
Q Consensus 7 ~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~ 38 (244)
-|++.|...|-|+||++|.+...+-..-+.++
T Consensus 24 Li~~AAai~g~s~tdFvl~aA~~~A~~vi~~~ 55 (95)
T COG4453 24 LIDRAAAIEGKSLTDFVLSAALEAAEDVIEDQ 55 (95)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhh
Confidence 46677777899999999998888777776654
No 73
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=26.66 E-value=61 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=29.1
Q ss_pred ccChhHHHHHHHHcCCchhHHHHH---------HHHHHHHHHHHHhc
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITG---------TIFLGIRLYMQAVN 39 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvlla---------a~a~al~~y~~~~g 39 (244)
.+|..+.|++++++|.|=|++=.. ..-..|+.|..++|
T Consensus 8 ~v~~~~wk~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g 54 (80)
T cd08313 8 EVPPRRWKEFVRRLGLSDNEIERVELDHRRCRDAQYQMLKVWKERGP 54 (80)
T ss_pred hCCHHHHHHHHHHcCCCHHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 478899999999999998887432 33456777777766
No 74
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.06 E-value=49 Score=19.10 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=14.0
Q ss_pred ccChhHHHHHHHHcCCchh
Q 044955 2 TFPLHQIKQIKDNLGATLN 20 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvN 20 (244)
.+.++++|+++++.|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 3567899999999976654
No 75
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=25.67 E-value=35 Score=21.63 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCchhHHHHHHH
Q 044955 7 QIKQIKDNLGATLNDVITGTI 27 (244)
Q Consensus 7 ~vk~ia~~~g~TvNDvllaa~ 27 (244)
.|+.+|+.+|++.+|++-.+.
T Consensus 5 ~V~elAk~l~v~~~~ii~~l~ 25 (54)
T PF04760_consen 5 RVSELAKELGVPSKEIIKKLF 25 (54)
T ss_dssp -TTHHHHHHSSSHHHHHHHH-
T ss_pred EHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999999986653
No 76
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=25.28 E-value=1.8e+02 Score=20.03 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=26.9
Q ss_pred CceEEEEEEEe-CCeEEEEEEecCCC-CChhHHHHHHHHH
Q 044955 180 PQSLVVTIVTY-MGNLRVSLGAEEGF-IDSPKLKSCIENA 217 (244)
Q Consensus 180 ~~~l~v~v~Sy-~~~l~lsv~~d~~~-~d~~~l~~~~~~~ 217 (244)
+..+.++|.+. +|++.+|+.+...+ +.-+++.+.+.++
T Consensus 15 gddI~itVl~i~gnqVkiGi~APk~v~I~R~Eiy~~Iq~E 54 (73)
T COG1551 15 GDDIEITVLSIKGNQVKIGINAPKEVSIHREEIYQRIQEE 54 (73)
T ss_pred cCCeEEEEEEEcCCeEEEeecCChhhhHHHHHHHHHHHHh
Confidence 44678888887 67999999988765 3555555555544
No 77
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=24.23 E-value=1.3e+02 Score=22.41 Aligned_cols=31 Identities=6% Similarity=0.259 Sum_probs=27.7
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
+++-++|++|-+..|+.|++.-+..+..+|.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 4667899999999999999999999998875
No 78
>PRK00153 hypothetical protein; Validated
Probab=24.04 E-value=2.4e+02 Score=20.53 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=27.0
Q ss_pred eEEEEEEEeCCeEEEEEEecCC-C-C-ChhHHHHHHHHHHHHHHHhhh
Q 044955 182 SLVVTIVTYMGNLRVSLGAEEG-F-I-DSPKLKSCIENAFEMILDAAS 226 (244)
Q Consensus 182 ~l~v~v~Sy~~~l~lsv~~d~~-~-~-d~~~l~~~~~~~l~el~~~a~ 226 (244)
.+.|++.+.+.-. .+..|+. + + |++.|.+++.+++++-.+.+.
T Consensus 39 ~V~V~v~G~~~v~--~i~Id~~ll~~~d~e~LedlI~~A~n~A~~~~~ 84 (104)
T PRK00153 39 LVKVTMTGKKEVK--RVKIDPSLVDPEDVEMLEDLILAAFNDALRKAE 84 (104)
T ss_pred eEEEEEecCceEE--EEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444444 4444554 3 4 899999999988887655553
No 79
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=23.31 E-value=52 Score=21.82 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=13.9
Q ss_pred ccChhHHHHHHHHcCCchhHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVIT 24 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvll 24 (244)
.+|.+.+-++++.+|++++-.+.
T Consensus 38 ~~P~~~l~~ia~~~gvsl~WLlt 60 (66)
T PF07022_consen 38 SIPAEWLIKIALETGVSLDWLLT 60 (66)
T ss_dssp S--HHHHHHHHHHH---HHHHHC
T ss_pred CCCHHHHHHHHHHHCcCHHHHHh
Confidence 46788888899999998876553
No 80
>PRK14621 hypothetical protein; Provisional
Probab=23.26 E-value=2.6e+02 Score=20.92 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=27.2
Q ss_pred EEEEeCCeEEEEEEecCCCC-ChhHHHHHHHHHHHHHHHhh
Q 044955 186 TIVTYMGNLRVSLGAEEGFI-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 186 ~v~Sy~~~l~lsv~~d~~~~-d~~~l~~~~~~~l~el~~~a 225 (244)
.|.--++.=.+++..|+.+. |.+.|.|++.+++++-.+.+
T Consensus 42 kV~~~G~~~i~~i~Idp~lldD~e~LeDLI~aA~NdA~~ka 82 (111)
T PRK14621 42 KASVNGKQKLLSLAIDPEIMDDVEMVQDLVVAAVNSALEES 82 (111)
T ss_pred EEEEEcCceEEEEEECHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33334555556677777765 89999999888888754444
No 81
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=23.19 E-value=2.5e+02 Score=19.64 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=27.5
Q ss_pred eEEEEEEEeCCeEEEEEEecCCCC-ChhHHHHHHHHHHHHHHHhhh
Q 044955 182 SLVVTIVTYMGNLRVSLGAEEGFI-DSPKLKSCIENAFEMILDAAS 226 (244)
Q Consensus 182 ~l~v~v~Sy~~~l~lsv~~d~~~~-d~~~l~~~~~~~l~el~~~a~ 226 (244)
.+.|++-+-+.-+.|.|.-+-.-+ |++.|.+.+.+++++-.+.+.
T Consensus 31 ~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~~a~ 76 (93)
T PF02575_consen 31 LVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIVEAVNDAQKKAR 76 (93)
T ss_dssp TEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCceEEEEEEehHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 455666655555555554332234 899999999999987766553
No 82
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=23.13 E-value=55 Score=29.77 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=43.1
Q ss_pred EEEEEEeCCeEEEEEEecCC--CCChhHHHHHHHHHHHH--HHHhhhcCCCCCCCccccccc
Q 044955 184 VVTIVTYMGNLRVSLGAEEG--FIDSPKLKSCIENAFEM--ILDAASATPSSSNFLNGHRAS 241 (244)
Q Consensus 184 ~v~v~Sy~~~l~lsv~~d~~--~~d~~~l~~~~~~~l~e--l~~~a~~~~~~~~~~~~~~~~ 241 (244)
.+++-||.|.+.=|+-.|.. .|||+++.....++-.. |.++.. ...-++--++||..
T Consensus 126 ~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsaAtlNLlRafa-~gG~A~L~~vh~W~ 186 (445)
T COG3200 126 GVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSAATLNLLRAFA-SGGLADLENVHRWN 186 (445)
T ss_pred CeeccccccccccCccCChhhcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHH
Confidence 57899999999999888865 47999999998665543 455554 56666766888754
No 83
>PRK14626 hypothetical protein; Provisional
Probab=22.33 E-value=2.7e+02 Score=20.76 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=25.6
Q ss_pred EEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhh
Q 044955 186 TIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 186 ~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a 225 (244)
.|.=-++.-...+..|+++ + |.+.|.|++.+++++-.+.+
T Consensus 43 kV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A~~k~ 85 (110)
T PRK14626 43 KVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEASRRS 85 (110)
T ss_pred EEEEECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556667664 5 78889988888887665444
No 84
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=22.13 E-value=74 Score=23.44 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.2
Q ss_pred hHHHHHHHHcCCchhHHH
Q 044955 6 HQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvl 23 (244)
.+.++||+-.|+|+.||-
T Consensus 74 sR~~RIA~GSG~~~~eV~ 91 (104)
T PF02978_consen 74 SRRRRIARGSGTTVQEVN 91 (104)
T ss_dssp HHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 678999999999999974
No 85
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=21.64 E-value=1.7e+02 Score=16.57 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=18.8
Q ss_pred CeEEEEEEecCCCCChhHHHHHHHHHHHHH
Q 044955 192 GNLRVSLGAEEGFIDSPKLKSCIENAFEMI 221 (244)
Q Consensus 192 ~~l~lsv~~d~~~~d~~~l~~~~~~~l~el 221 (244)
|.|.|.|++.-.-| +|+..+.+.+++.
T Consensus 3 g~LqI~ISTnG~sP---~la~~iR~~ie~~ 29 (30)
T PF14824_consen 3 GPLQIAISTNGKSP---RLARLIRKEIERL 29 (30)
T ss_dssp TTEEEEEEESSS-H---HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCh---HHHHHHHHHHHHh
Confidence 56778888776544 7888888877654
No 86
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=21.17 E-value=1.2e+02 Score=20.64 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.7
Q ss_pred hHHHHHHHHcCCchhHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGT 26 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa 26 (244)
+.+++||++-|+|+|.++.-+
T Consensus 24 ~~L~eiA~~~g~s~~~li~~i 44 (67)
T PF13467_consen 24 DALEEIAAREGLSLNALIAEI 44 (67)
T ss_dssp HHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 568999999999998876555
Done!