Query 044955
Match_columns 244
No_of_seqs 109 out of 883
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fot_A 15-O-acetyltransferase; 99.2 1.2E-10 4E-15 108.8 14.5 203 5-222 289-515 (519)
2 1q9j_A PAPA5, polyketide synth 99.2 1.2E-09 4E-14 97.9 17.4 191 5-223 223-415 (422)
3 2jgp_A Tyrocidine synthetase 3 98.9 2.2E-07 7.4E-12 85.8 22.2 189 5-223 315-508 (520)
4 1l5a_A Amide synthase, VIBH; n 98.8 7.1E-07 2.4E-11 80.2 21.7 184 5-224 220-407 (436)
5 4hvm_A Tlmii; PSI-biology, mid 98.5 1.2E-06 4.2E-11 80.2 11.8 200 6-224 228-460 (493)
6 2xhg_A Tyrocidine synthetase A 98.3 4.4E-05 1.5E-09 69.0 17.0 193 7-224 247-456 (466)
7 2vsq_A Surfactin synthetase su 98.0 0.00032 1.1E-08 71.9 18.8 185 5-223 240-430 (1304)
8 3rqc_A Probable lipoamide acyl 96.2 0.19 6.4E-06 41.4 14.4 154 2-214 37-207 (224)
9 1dpb_A Dihydrolipoyl-transacet 95.7 0.32 1.1E-05 40.5 13.7 21 15-35 68-88 (243)
10 2i9d_A Chloramphenicol acetylt 95.6 0.33 1.1E-05 39.7 13.5 33 2-34 35-67 (217)
11 1scz_A E2, dihydrolipoamide su 95.6 0.17 6E-06 41.8 11.9 20 15-34 58-77 (233)
12 3cla_A Type III chloramphenico 95.5 0.13 4.6E-06 41.9 10.8 33 2-34 33-65 (213)
13 2ii3_A Lipoamide acyltransfera 95.4 0.27 9.3E-06 41.4 12.4 21 15-35 83-103 (262)
14 1q23_A Chloramphenicol acetylt 95.0 1 3.4E-05 36.8 14.6 33 2-34 38-70 (219)
15 3b8k_A PDCE2;, dihydrolipoylly 94.9 0.24 8.4E-06 41.1 10.7 33 2-34 43-83 (239)
16 3l60_A Branched-chain alpha-ke 94.3 0.41 1.4E-05 40.0 10.6 34 2-35 45-83 (250)
17 3mae_A 2-oxoisovalerate dehydr 94.0 0.67 2.3E-05 38.9 11.5 20 15-34 72-91 (256)
18 1nm8_A Carnitine O-acetyltrans 92.6 1.5 5.2E-05 41.3 12.7 83 136-228 516-600 (616)
19 1t1u_A Choline O-acetyltransfe 92.3 1.8 6.1E-05 41.1 12.8 81 136-226 532-614 (639)
20 2deb_A CPT II, carnitine O-pal 91.6 1.9 6.3E-05 41.1 12.0 73 145-228 577-649 (653)
21 2e1v_A Acyl transferase; BAHD 89.7 2.6 8.8E-05 37.8 10.7 60 16-90 272-331 (454)
22 2xr7_A Malonyltransferase; xen 89.6 1.6 5.3E-05 39.2 9.2 66 16-90 266-333 (453)
23 2bgh_A Vinorine synthase; VS, 89.1 3.4 0.00012 36.6 11.0 78 3-90 221-305 (421)
24 1xl7_A COT, peroxisomal carnit 85.7 6.3 0.00022 37.1 11.0 71 145-226 536-608 (612)
25 4g22_A Hydroxycinnamoyl-COA sh 84.8 1.8 6.2E-05 38.7 6.7 76 3-90 236-318 (439)
26 2xt6_A 2-oxoglutarate decarbox 79.6 19 0.00067 36.3 12.4 21 15-35 39-59 (1113)
27 2rkv_A Trichothecene 3-O-acety 76.0 3.3 0.00011 36.9 5.3 60 17-89 259-319 (451)
28 3qoq_A Alginate and motility r 70.2 6.3 0.00022 26.0 4.2 28 6-33 32-59 (69)
29 1baz_A ARC repressor; transcri 70.1 6.9 0.00023 24.2 4.2 27 6-32 20-46 (53)
30 1nla_A Transcriptional repress 66.7 8.1 0.00028 25.1 4.1 29 6-34 20-48 (64)
31 2gpe_A Bifunctional protein PU 61.1 13 0.00046 22.3 4.2 31 5-39 15-45 (52)
32 2an7_A Protein PARD; bacterial 55.5 7.4 0.00025 26.4 2.4 23 6-28 14-36 (83)
33 1taf_B TFIID TBP associated fa 54.7 26 0.0009 23.0 5.0 36 2-37 6-42 (70)
34 2k9i_A Plasmid PRN1, complete 54.7 19 0.00064 21.7 4.2 31 5-39 21-51 (55)
35 1p94_A Plasmid partition prote 53.5 17 0.00058 24.3 4.0 29 6-38 47-75 (76)
36 2hue_C Histone H4; mini beta s 52.6 16 0.00054 24.8 3.8 36 2-37 10-46 (84)
37 1id3_B Histone H4; nucleosome 48.7 19 0.00065 25.5 3.8 36 2-37 28-64 (102)
38 1y9b_A Conserved hypothetical 48.3 32 0.0011 23.7 4.9 33 6-38 18-51 (90)
39 1u9p_A PARC; unknown function; 43.3 27 0.00093 25.5 4.0 27 6-32 31-57 (120)
40 3qq6_A HTH-type transcriptiona 43.1 15 0.00053 23.9 2.5 22 2-23 50-71 (78)
41 2bsq_E FITA, trafficking prote 39.2 42 0.0014 22.4 4.2 27 6-32 14-40 (77)
42 3s8q_A R-M controller protein; 38.8 21 0.00073 23.1 2.7 24 2-25 50-73 (82)
43 2kel_A SVTR protein, uncharact 37.3 53 0.0018 20.4 4.2 28 6-37 26-53 (56)
44 2yfw_B Histone H4, H4; cell cy 36.9 37 0.0013 23.9 3.8 37 2-38 29-66 (103)
45 2r1j_L Repressor protein C2; p 36.0 26 0.00087 21.4 2.6 22 3-24 45-66 (68)
46 2ewt_A BLDD, putative DNA-bind 35.4 14 0.00049 23.1 1.3 20 3-22 50-69 (71)
47 3b7h_A Prophage LP1 protein 11 35.4 19 0.00067 22.8 2.0 22 2-23 47-68 (78)
48 2k9q_A Uncharacterized protein 35.4 22 0.00075 22.8 2.3 21 3-23 42-62 (77)
49 2b5a_A C.BCLI; helix-turn-heli 35.1 27 0.00092 22.1 2.7 22 3-24 50-71 (77)
50 1vpz_A Carbon storage regulato 34.9 98 0.0034 20.4 5.4 36 182-217 29-66 (73)
51 3omt_A Uncharacterized protein 34.8 14 0.00049 23.4 1.3 22 2-23 47-68 (73)
52 1tzy_D Histone H4-VI; histone- 34.8 42 0.0014 23.6 3.8 35 3-37 30-65 (103)
53 2ofy_A Putative XRE-family tra 34.3 28 0.00094 22.7 2.7 21 3-23 55-75 (86)
54 1adr_A P22 C2 repressor; trans 34.1 29 0.00098 21.8 2.7 22 3-24 45-66 (76)
55 2xi8_A Putative transcription 32.7 21 0.00072 21.7 1.8 21 3-23 41-61 (66)
56 2bti_A Carbon storage regulato 32.3 1E+02 0.0034 19.8 5.5 37 181-217 18-56 (63)
57 1mnt_A MNT repressor; transcri 31.9 42 0.0014 22.3 3.2 27 6-32 17-43 (76)
58 1ybx_A Conserved hypothetical 31.7 88 0.003 23.5 5.3 41 183-225 78-121 (143)
59 1f8v_D Mature capsid protein g 31.3 6.8 0.00023 22.7 -0.7 16 147-162 13-28 (40)
60 2ba3_A NIKA; dimer, bacterial 31.2 34 0.0012 20.4 2.5 23 6-28 28-50 (51)
61 3f6w_A XRE-family like protein 31.2 31 0.0011 22.2 2.5 24 2-25 53-76 (83)
62 3g5g_A Regulatory protein; tra 30.7 33 0.0011 23.5 2.7 25 2-26 67-91 (99)
63 3kk4_A Uncharacterized protein 29.7 91 0.0031 22.9 4.9 21 6-26 40-60 (125)
64 3h87_C Putative uncharacterize 28.0 57 0.002 21.6 3.3 27 5-31 14-40 (73)
65 2cpg_A REPA protein, transcrip 27.7 84 0.0029 17.7 3.8 28 5-36 14-41 (45)
66 3f42_A Protein HP0035; helicob 26.3 1.2E+02 0.004 21.2 4.9 34 192-225 47-81 (99)
67 1u9p_A PARC; unknown function; 25.9 68 0.0023 23.4 3.6 29 5-33 75-103 (120)
68 3f52_A CLP gene regulator (CLG 25.8 42 0.0014 23.4 2.5 24 3-26 68-91 (117)
69 2kpj_A SOS-response transcript 25.7 43 0.0015 22.3 2.5 21 3-23 49-69 (94)
70 1ku5_A HPHA, archaeal histon; 25.3 1.4E+02 0.0046 19.0 4.8 36 2-37 6-42 (70)
71 2ay0_A Bifunctional PUTA prote 25.2 1.1E+02 0.0037 18.9 4.2 29 6-38 16-44 (58)
72 3a1y_A 50S ribosomal protein P 25.0 1E+02 0.0034 19.2 3.9 31 2-32 16-46 (58)
73 3bs3_A Putative DNA-binding pr 24.7 27 0.00094 21.9 1.3 21 3-23 50-70 (76)
74 3hva_A Protein FIMX; ggdef dig 24.5 54 0.0018 24.1 3.1 50 3-52 50-101 (177)
75 2jpp_A Translational repressor 23.9 1E+02 0.0034 20.2 3.8 35 182-216 17-53 (70)
76 3op9_A PLI0006 protein; struct 23.9 48 0.0016 22.9 2.5 21 3-23 49-69 (114)
77 3vk0_A NHTF, transcriptional r 23.8 38 0.0013 23.7 2.0 24 2-25 60-83 (114)
78 3ivp_A Putative transposon-rel 23.4 46 0.0016 23.5 2.4 21 3-23 52-72 (126)
79 3bd1_A CRO protein; transcript 23.4 49 0.0017 21.2 2.4 20 3-22 37-58 (79)
80 3kz3_A Repressor protein CI; f 22.8 40 0.0014 21.7 1.8 21 3-23 52-72 (80)
81 1b0n_A Protein (SINR protein); 21.9 55 0.0019 22.2 2.5 21 3-23 42-62 (111)
82 1nov_D Nodamura virus coat pro 21.2 23 0.00078 20.9 0.2 14 148-161 14-27 (44)
83 3hvw_A Diguanylate-cyclase (DG 21.1 70 0.0024 23.8 3.2 49 4-53 37-87 (176)
84 3lfp_A CSP231I C protein; tran 20.9 42 0.0014 22.6 1.7 22 3-24 45-66 (98)
85 3izc_t 60S acidic ribosomal pr 20.9 1E+02 0.0036 21.8 3.8 31 2-32 20-50 (106)
86 2lbf_A 60S acidic ribosomal pr 20.3 84 0.0029 20.4 2.9 31 2-32 22-52 (69)
87 1zug_A Phage 434 CRO protein; 20.2 53 0.0018 20.1 1.9 20 4-23 43-62 (71)
88 3tvk_A DGC, diguanylate cyclas 20.1 58 0.002 25.0 2.5 50 3-52 39-90 (179)
89 3dva_I Dihydrolipoyllysine-res 20.0 22 0.00075 31.8 0.0 33 2-34 229-270 (428)
No 1
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=99.23 E-value=1.2e-10 Score=108.78 Aligned_cols=203 Identities=11% Similarity=0.128 Sum_probs=115.4
Q ss_pred hhHHHHHHHHc---CCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEE
Q 044955 5 LHQIKQIKDNL---GATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFA 81 (244)
Q Consensus 5 l~~vk~ia~~~---g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~ 81 (244)
.++|++.||+. |+|||.++.||++.|+.++....+. ++...+.+.+|||+|+..+... .....+....
T Consensus 289 t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~~~~~~~-~~~~~~~~~~pvnlR~~l~~~~--------~~n~~~~~~~ 359 (519)
T 3fot_A 289 SIDIVKAVKTRLGPGFTISHLTQAAIVLALLDHLKPNDL-SDDEVFISPTSVDGRRWLREDI--------ASNFYAMCQT 359 (519)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHC----C-CTTCCEEEEEEEECGGGBCHHH--------HTSCCSCCEE
T ss_pred HHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhhcCCccc-CCCccEEEEeeeeccccCCCcc--------cccccceeee
Confidence 47889999999 9999999999999999997543222 2235799999999998764210 0111233333
Q ss_pred EEEeecccCCC-CCCCCHHHH-----HHHHHHHHHHH-hhccchhhHHHHHHHHHhhhcHHHHHHHHhcc---C-CCcce
Q 044955 82 FLHISVPQLTN-AEVQNPLKF-----IQKAQEIIQSK-RSSFGAYLTAKLLETVKKLRGHETAAKFIHGS---L-NNSSL 150 (244)
Q Consensus 82 ~~~v~Lp~~~~-~~~~dp~er-----L~~v~~~~~~~-k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~-~~~t~ 150 (244)
.+.+.++.-.. ....+..+. +.++.+++++. +......+. ..+.++.+ ....++++.. . ...+.
T Consensus 360 ~~~~~v~~i~~~~~~~~~~e~~~~~~~~~~ar~l~~~y~~~~~np~i-~~l~~~~k----~~~~~l~~~~~~~~~~~~tp 434 (519)
T 3fot_A 360 AAVVRIENLKSITVSHKDEKELQVRALESACRNIKKSYRQWLENPFL-QALGLRVH----NFEASYLHAKPIPFEGEANP 434 (519)
T ss_dssp EEEEEECCGGGGCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTCTTH-HHHHHHHH----HHHHHHHHHCSSCCCSBCCC
T ss_pred eeeeEecCccccccccchhhhhhHhHHHHHHHHHHHHhhcccCCchH-HHhHHHHH----HHHHHHhcccCCCCCCccCc
Confidence 34444432100 000112122 22222222221 110111010 11111111 0122223322 1 23678
Q ss_pred EEeccCCCcc---ceEec-------CceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCCChhHHHHHHHHHHHH
Q 044955 151 AITNMMGPVE---KMALA-------NHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFIDSPKLKSCIENAFEM 220 (244)
Q Consensus 151 ~~SNvpGp~~---~l~~~-------G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d~~~l~~~~~~~l~e 220 (244)
.+||+ |..+ +-.++ .-+|+++.+........+.+.++||+|+|+|+++.+....|.+...+++++-.++
T Consensus 435 ~lSsl-G~vd~~lp~~y~~~~~~~~~~~V~~~~~~~~~~~~~~~~~~~Tf~g~L~l~~~yn~a~~~~e~v~~~l~~v~~~ 513 (519)
T 3fot_A 435 LFISD-GINERFIPHEIKQTATGENVLSVESIDFVVNQSLPYLAIRLDSWRDASTLNIIYNDANYTEAEVQKYLQSIVEF 513 (519)
T ss_dssp EEEEE-EEGGGTSCSEEEETTTTEEEEEEEEEEEEECCCSSSCEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred ccccC-CccccccchhhccccCCCCceEEEEEEEEccccCCceEEEEEEECCEEEEEEEeccccCCHHHHHHHHHHHHHH
Confidence 99999 5444 33333 2578888877644456789999999999999999999887777777777776666
Q ss_pred HH
Q 044955 221 IL 222 (244)
Q Consensus 221 l~ 222 (244)
|.
T Consensus 514 L~ 515 (519)
T 3fot_A 514 ML 515 (519)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 2
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=99.17 E-value=1.2e-09 Score=97.87 Aligned_cols=191 Identities=10% Similarity=-0.009 Sum_probs=129.6
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
.+.++++|+++|+|++++++||++.+|++| ...| ...+.+.+|++.|..... +.+.....|.+|...
T Consensus 223 ~~~l~~~a~~~~~t~~~~l~aa~~~~l~r~-~~~~----~~~v~~g~~~~~R~~~~~--------~~~~~~~~~~vG~f~ 289 (422)
T 1q9j_A 223 TSDLMAFGREHRLSLNAVVAAAILLTEWQL-RNTP----HVPIPYVYPVDLRFVLAP--------PVAPTEATNLLGAAS 289 (422)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHHH-HTCS----SCCEEEEEEEETTTTSSS--------CCCTTTBSCCEEEEE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccCC----CceEEEeeeeecccccCC--------CCChhhhhhhheeee
Confidence 357899999999999999999999999998 2122 256999999999975210 000135567777777
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccceEe
Q 044955 85 ISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEKMAL 164 (244)
Q Consensus 85 v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~l~~ 164 (244)
-.+|+.. ..++.+.++++++++........... ..++..-+........+. .++++|+++......+
T Consensus 290 n~lp~~~---~~~~~~~l~~v~~~~~~~~~~~~~~~---------~~l~~~~i~~~~~~~~pl-~~~~~n~~~~~~~~~~ 356 (422)
T 1q9j_A 290 YLAEIGP---NTDIVDLASDIVATLRADLANGVIQQ---------SGLHFGTAFEGTPPGLPP-LVFCTDATSFPTMRTP 356 (422)
T ss_dssp EEECCCS---SCCHHHHHHHHHHHHHHHHHHTHHHH---------SCCBGGGGGGCCCSSSCC-CEEEECCCCCCSCCCC
T ss_pred eeeeccC---CCCHHHHHHHHHHHHHHHHhcCeeee---------cccchHHHhcccCCCCCc-eEEEecCCcCCCCCCC
Confidence 7777753 35788999999998877643221100 000110000001011122 6889999876666677
Q ss_pred cCceeeEEeeeec-CCCceEEEE-EEEeCCeEEEEEEecCCCCChhHHHHHHHHHHHHHHH
Q 044955 165 ANHPIKGLYFMVA-GSPQSLVVT-IVTYMGNLRVSLGAEEGFIDSPKLKSCIENAFEMILD 223 (244)
Q Consensus 165 ~G~~v~~~~~~~~-~~~~~l~v~-v~Sy~~~l~lsv~~d~~~~d~~~l~~~~~~~l~el~~ 223 (244)
.|..+..+..... ..+..+.+. +.+++|.+.+.+ ++.. .+.+++.+.|...|+++.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-y~~~-~~~~~l~~~~~~~L~~l~~ 415 (422)
T 1q9j_A 357 PGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEH-HGHI-AEPGKSLEAIRSLLCTVPS 415 (422)
T ss_dssp TTCEEEEEEEEECCBSSCCCCEEEEEEETTEEEEEE-ESSC-SSHHHHHHHHHHHHHHTTT
T ss_pred CCceeEeeecccccCCCCCceEEEEEeeCCeEEEEE-ecCc-cchHHHHHHHHHHHHHhhc
Confidence 8888888775543 344567777 788999999999 9887 7788888888888877643
No 3
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.92 E-value=2.2e-07 Score=85.83 Aligned_cols=189 Identities=11% Similarity=0.052 Sum_probs=127.6
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
.+.++++|+++|+|++++++||++..|++|.. ...+.+.+|++.|...+ .....|+++..+.
T Consensus 315 ~~~l~~~a~~~~~T~~~~l~aa~a~~L~~~~~-------~~dv~~g~~~~gR~~~~-----------~~~~vG~f~n~lp 376 (520)
T 2jgp_A 315 TEGLHQLAQATGTTLYMVLLAAYNVLLAKYAG-------QEDIIVGTPITGRSHAD-----------LEPIVGMFVNTLA 376 (520)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT-------CSCEEEEEEECCCCSGG-----------GTTCCSCCCEEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEeccCCCCchh-----------hhccEEeeeeeee
Confidence 46799999999999999999999999999974 24689999999997532 3467899888888
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccceEe
Q 044955 85 ISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEKMAL 164 (244)
Q Consensus 85 v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~l~~ 164 (244)
+.+.+.. ..+..+.|+++++++..........+. .+... + ... +.. ...+.+.+.++..+++.....+
T Consensus 377 lr~~~~~---~~~~~~~l~~v~~~~~~~~~h~~~p~~-~i~~~---l-~~~---r~~-~~~~lf~~~~~~~~~~~~~~~~ 444 (520)
T 2jgp_A 377 MRNKPQR---EKTFSEFLQEVKQNALDAYGHQDYPFE-ELVEK---L-AIA---RDL-SRNPLFDTVFTFQNSTEEVMTL 444 (520)
T ss_dssp EEECCCT---TSBHHHHHHHHHHHHHHHHHTCCSCHH-HHHHH---T-CCC---CCT-TSCSSCSEEEEEECCCCSCCCC
T ss_pred EEecCCC---CCCHHHHHHHHHHHHHHHHHhccCCHH-HHHHH---h-cCC---CCC-CCCCcEEEEEEEecCCCccccC
Confidence 8877742 367888999999998776443221111 11111 1 100 000 0112345555555555555666
Q ss_pred cCceeeEEeeeec--CCCceEEEEEEEeCCeEEEEEEecCCCCC---hhHHHHHHHHHHHHHHH
Q 044955 165 ANHPIKGLYFMVA--GSPQSLVVTIVTYMGNLRVSLGAEEGFID---SPKLKSCIENAFEMILD 223 (244)
Q Consensus 165 ~G~~v~~~~~~~~--~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d---~~~l~~~~~~~l~el~~ 223 (244)
.|..+........ .....+.+.+..++|.+.+.+.++....+ .+++.+.|...|+++.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~ 508 (520)
T 2jgp_A 445 PECTLAPFMTDETGQHAKFDLTFSATEEREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQ 508 (520)
T ss_dssp SSEEEEECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeecCCCCcceeeeeEEEEEECCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 7766554432222 23467899999999999999999988743 56667777777666654
No 4
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.83 E-value=7.1e-07 Score=80.17 Aligned_cols=184 Identities=10% Similarity=-0.049 Sum_probs=124.6
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
.+.++++|++.|+|++++++||++.+|++|.. ..+.+.+|++.|.... .....|+++..+.
T Consensus 220 ~~~l~~~a~~~~~t~~~~l~aa~~~~L~~~~g--------~dv~ig~~~~~R~~~~-----------~~~~vG~f~n~lp 280 (436)
T 1l5a_A 220 NHLLLKLANANQIGWPDALVALCALYLESAEP--------DAPWLWLPFMNRWGSV-----------AANVPGLMVNSLP 280 (436)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHST--------TCCEEEEEECCCTTSG-----------GGGSCSCCCEEEE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhC--------CceEEeeecccCCChH-----------HhcCcceEEEEEE
Confidence 35799999999999999999999999999853 2488899999997532 3467888888888
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccceEe
Q 044955 85 ISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEKMAL 164 (244)
Q Consensus 85 v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~l~~ 164 (244)
+.+.+.. ..+..+.++++++++..........+. .+... + .. .....+.+...++..+.+.. .+
T Consensus 281 lr~~~~~---~~t~~~~l~~v~~~~~~~~~h~~~~~~-~i~~~---l-~~------~~~~~~lf~~~~~~~~~~~~--~~ 344 (436)
T 1l5a_A 281 LLRLSAQ---QTSLGNYLKQSGQAIRSLYLHGRYRIE-QIEQD---Q-GL------NAEQSYFMSPFINILPFESP--HF 344 (436)
T ss_dssp EECCCCT---TCBHHHHHHHHHHHHHHHHHTTTSCHH-HHHHH---T-TC------CTTCCBCCCSEEEEECCCCC--CC
T ss_pred EEEecCC---CCCHHHHHHHHHHHHHHHhhhcCCCHH-HHHHH---h-cc------cccCCCccceEEEeeccCcc--cc
Confidence 8877642 357888999999998777543322121 11111 1 10 00011223444444433332 56
Q ss_pred cCceeeEEeeeecCCCceEEEEEE-EeCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHHh
Q 044955 165 ANHPIKGLYFMVAGSPQSLVVTIV-TYMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILDA 224 (244)
Q Consensus 165 ~G~~v~~~~~~~~~~~~~l~v~v~-Sy~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~~ 224 (244)
.|..+........... .+.+.+. .++|.+.+.+.++.... ..+++.+.|...|+++.+.
T Consensus 345 ~~~~~~~~~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~ 407 (436)
T 1l5a_A 345 ADCQTELKVLASGSAE-GINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLAR 407 (436)
T ss_dssp TTCEEEEEEEEECCCC-SEEEEEEECTTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEecCCCCcc-ceEEEEEecCCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7777765544332223 7888888 68999999999998874 4677788888888777654
No 5
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.45 E-value=1.2e-06 Score=80.20 Aligned_cols=200 Identities=7% Similarity=-0.060 Sum_probs=105.5
Q ss_pred hHHHHHHHHcCCc--hhHHHHHHHHHHHHHHHHH----hcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCce
Q 044955 6 HQIKQIKDNLGAT--LNDVITGTIFLGIRLYMQA----VNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNH 79 (244)
Q Consensus 6 ~~vk~ia~~~g~T--vNDvllaa~a~al~~y~~~----~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~ 79 (244)
+.|+++|+++|+| ++++++||++.+|++|... .+.......+.+.+|++.|... +.....|.+
T Consensus 228 ~~l~~~a~~~~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g~~dv~~g~~~~gR~~~-----------~~~~~vG~f 296 (493)
T 4hvm_A 228 QALTEPGGPLGGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTGKDSLYLSTEVDLRDHL-----------QLGSVVGPL 296 (493)
T ss_dssp HHHHCC------CHHHHHHHHHHHHHHHC----------------CEEEEEEEEEHHHHT-----------TCCSBCSCC
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhcccccccCcCCCCCEEEEeeccCCCCc-----------chhcCeEee
Confidence 5688899999999 9999999999999999211 0100113579999999999642 235678888
Q ss_pred EEEEEeecccCCCCC--CCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEecc--
Q 044955 80 FAFLHISVPQLTNAE--VQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNM-- 155 (244)
Q Consensus 80 ~~~~~v~Lp~~~~~~--~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNv-- 155 (244)
+..+.+.+.+. . ..+..+.|+++++++...... ...+. .+......+-... ......+....+++-|.
T Consensus 297 ~n~lplr~~~~---~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~-~i~~~~~~l~~~~---~~~~~~lf~~~~~~~~~~~ 368 (493)
T 4hvm_A 297 TDRVVFGVDLT---GLREPSFRDLMSRTQAGFLDAVVH-YLPYH-DVVDLAVDLGVVT---PPRVAARWDVAVHLCRNAP 368 (493)
T ss_dssp EEEEEEEEECT---TCSSCBHHHHHHHHHHHHHHHHHT-CCCHH-HHHHHHHHTTSCB---TTBTTGGGCEEECC-----
T ss_pred eceeEEEEecC---CCcCCCHHHHHHHHHHHHHHHHhh-cCCHH-HHHHHHhhhCccc---CCCCCcceeEEEEEEecCC
Confidence 88887777763 3 467899999999998887665 33222 1222110110000 00000001111222222
Q ss_pred ----CCCccceEecCceeeEEeee--------------e---cCCCceEEEEEEEeCCeEEEEEEecCCCC--ChhHHHH
Q 044955 156 ----MGPVEKMALANHPIKGLYFM--------------V---AGSPQSLVVTIVTYMGNLRVSLGAEEGFI--DSPKLKS 212 (244)
Q Consensus 156 ----pGp~~~l~~~G~~v~~~~~~--------------~---~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~--d~~~l~~ 212 (244)
++....+...|..+..+..- . ..++..+.+.+..++|.+.+.+.++..+. ..+.+.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~~l~~~~i~~l~~ 448 (493)
T 4hvm_A 369 SSSLTRGERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRRTHPAGGGSALLD 448 (493)
T ss_dssp ---------------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------CHHHH
T ss_pred ccccccccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEccccCHHHHHHHHH
Confidence 23333444556555544320 0 01223488999999999999999998763 5677777
Q ss_pred HHHHHHHHHHHh
Q 044955 213 CIENAFEMILDA 224 (244)
Q Consensus 213 ~~~~~l~el~~~ 224 (244)
.|.+.|+++.+.
T Consensus 449 ~~~~~L~~~~~~ 460 (493)
T 4hvm_A 449 GLDAAMAQAVAD 460 (493)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 777777777543
No 6
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=98.25 E-value=4.4e-05 Score=68.98 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=111.7
Q ss_pred HHHHHH-HHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEe
Q 044955 7 QIKQIK-DNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHI 85 (244)
Q Consensus 7 ~vk~ia-~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v 85 (244)
.+++.+ +++|+|++++++||++.+|++|.. ...+.+.+|++.|...... ++.....|+++..+.+
T Consensus 247 ~l~~~~~~~~~~t~~~~llaa~~~~l~~~~~-------~~dv~ig~~~~gR~~~~~~-------~~~~~~vG~f~n~lpl 312 (466)
T 2xhg_A 247 QLLKHANQAYQTEINDLLLAALGLAFAEWSK-------LAQIVIHLEGHGREDIIEQ-------ANVARTVGWFTSQYPV 312 (466)
T ss_dssp HHHHTGGGTTTCCHHHHHHHHHHHHHHHHHC-------CSEEEEEEEECCCCSCSTT-------CCCTTCCSCCCEEEEE
T ss_pred HHHHHhHHhhCCCHHHHHHHHHHHHHHHHhC-------CCceEEEecCCCCCccccC-------CCccccccceeeeccE
Confidence 454444 568999999999999999999963 2468999999999752100 0134678888888777
Q ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCccceEec
Q 044955 86 SVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPVEKMALA 165 (244)
Q Consensus 86 ~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~ 165 (244)
.+.+.. ..++.+.|+++++++...++..-+ +.....+... . . +.-........+.|+..+.........
T Consensus 313 r~~~~~---~~~~~~~l~~v~~~~~~~~~~~~~---~~~~~~l~~~---~-~-~~~~~~~~~p~~~f~~~~~~~~~~~~~ 381 (466)
T 2xhg_A 313 LLDLKQ---TAPLSDYIKLTKENMRKIPRKGIG---YDILKHVTLP---E-N-RGSLSFRVQPEVTFNYLGQFDADMRTE 381 (466)
T ss_dssp EEECSC---CCSHHHHHHHHHHHHHHSGGGGTH---HHHHHHTSCG---G-G-STTCCCCCCCSEEEEEEEECCTTCSSS
T ss_pred EEecCC---CCCHHHHHHHHHHHHHhCccCCcc---cceeeecccc---c-c-cccccccCCCeEEEeecCcccccccCC
Confidence 777642 367889999999998776432222 2121211100 0 0 000000111223333332121111111
Q ss_pred CceeeEEee-----------e-e-cCCCceEEEEEEEeCCeEEEEEEecCCCC---ChhHHHHHHHHHHHHHHHh
Q 044955 166 NHPIKGLYF-----------M-V-AGSPQSLVVTIVTYMGNLRVSLGAEEGFI---DSPKLKSCIENAFEMILDA 224 (244)
Q Consensus 166 G~~v~~~~~-----------~-~-~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~---d~~~l~~~~~~~l~el~~~ 224 (244)
|-.+..+.. + + ......+.+.+...+|.+.+.+.++..+. ..+.+.+.|...|+++.+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~ 456 (466)
T 2xhg_A 382 LFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSSEQYREESIQQLSQSYQKHLLAIIAH 456 (466)
T ss_dssp SCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 211111100 0 0 00134678888888999999999998874 4567777777777776544
No 7
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=97.98 E-value=0.00032 Score=71.89 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=115.7
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEE
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLH 84 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~ 84 (244)
.+++|++|++.|+|++.+++||++..|++|.. ...+.+.+|++-|..... +.+...|+++..+.
T Consensus 240 ~~~L~~~a~~~~~T~~~vllaa~a~~L~r~tg-------~~dvv~G~pvsgR~~~~~---------~~~~~vG~fvntlp 303 (1304)
T 2vsq_A 240 TKAFTELAKSQHTTLSTALQAVWSVLISRYQQ-------SGDLAFGTVVSGRPAEIK---------GVEHMVGLFINVVP 303 (1304)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-------CSEEEEEEEECCCCTTST---------TGGGCCSSCCEEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CCCEEEEEEeCCCCccch---------hhhcccccceeEEE
Confidence 46899999999999999999999999999964 246999999999975210 12356788877777
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcceEEeccCCCc---cc
Q 044955 85 ISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSSLAITNMMGPV---EK 161 (244)
Q Consensus 85 v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~SNvpGp~---~~ 161 (244)
+.+.+.. ..+..+.|+++++++......-...+. .+. ..+. ...+-+...++.|.+... ..
T Consensus 304 lr~~~~~---~~s~~~ll~~v~~~~~~a~~hq~~p~~----~i~-~~l~--------~~~lf~~~~~~~~~~~~~~~~~~ 367 (1304)
T 2vsq_A 304 RRVKLSE---GITFNGLLKRLQEQSLQSEPHQYVPLY----DIQ-SQAD--------QPKLIDHIIVFENYPLQDAKNEE 367 (1304)
T ss_dssp EEEECCT---TCBHHHHHHHHHHHHHHHGGGTTSCHH----HHH-HSSS--------CSSSCCCEEEECSSCHHHHSCCC
T ss_pred EEecCCC---CCcHHHHHHHHHHHHHHhhhcccCCHH----HHH-HHhC--------CCcccceeEEEeecccccccccc
Confidence 7776642 356788899999988776443221111 111 1101 111122345556654211 11
Q ss_pred eEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCCC---hhHHHHHHHHHHHHHHH
Q 044955 162 MALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFID---SPKLKSCIENAFEMILD 223 (244)
Q Consensus 162 l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d---~~~l~~~~~~~l~el~~ 223 (244)
....|-.+..+... ......+++.+. .++.+.+.+.++..+.| .+++.+.|..-|+++.+
T Consensus 368 ~~~~g~~~~~~~~~-~~~~~dL~l~~~-~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~ 430 (1304)
T 2vsq_A 368 SSENGFDMVDVHVF-EKSNYDLNLMAS-PGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQ 430 (1304)
T ss_dssp HHHHSEEEEEEEEC-CCCCSSEEEEEE-CSSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCceeEeeecc-cccccCeEEEEe-cCCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcc
Confidence 11234444433322 223345677654 57889999999988743 56667777777766644
No 8
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=96.18 E-value=0.19 Score=41.37 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=82.9
Q ss_pred ccChhHHHHHHHH-----cCCchhHHHHHHHHHHHHHHHHHhcCCC-------CCcceEEEEEeeecCCccchhhhhhcC
Q 044955 2 TFPLHQIKQIKDN-----LGATLNDVITGTIFLGIRLYMQAVNQES-------TNLHSTAVVLLNTRMFKSISSIKEMVK 69 (244)
Q Consensus 2 ~~~l~~vk~ia~~-----~g~TvNDvllaa~a~al~~y~~~~g~~~-------~~~~l~~~vPvslR~~~~~~~~~~~~~ 69 (244)
++++..+.+.+++ .+.|++++++-|++.||+++=+-+.... ....+.+.+.|+...
T Consensus 37 evDvt~l~~~r~~~k~~g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~~~~i~~~~~v~igiAV~~~~------------ 104 (224)
T 3rqc_A 37 EVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPD------------ 104 (224)
T ss_dssp CCBTHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHSGGGSBBCCSSTTCCCEECSCCEEEEEECSS------------
T ss_pred EEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhheEEeCCCCEEEEeCccceEeEEEcCC------------
Confidence 5677788777766 4679999999999999998733221110 113455666664210
Q ss_pred CCCCCCCCceEEEEEeecccCCCCCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcHHHHHHHHhccCCCcc
Q 044955 70 PDSKAPWGNHFAFLHISVPQLTNAEVQNPLKFIQKAQEIIQSKRSSFGAYLTAKLLETVKKLRGHETAAKFIHGSLNNSS 149 (244)
Q Consensus 70 ~~~~~~~gN~~~~~~v~Lp~~~~~~~~dp~erL~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~t 149 (244)
| ..++ +-.+.+..+..+--+++++-.++.|+.. + .+ .-+...|
T Consensus 105 -------G-----L~vP--vi~~a~~~sl~~i~~~~~~l~~~ar~~~--------------L-~~--------~e~~ggt 147 (224)
T 3rqc_A 105 -------G-----LNVF--VIKDADRKSMVEISAEISDKASRARENK--------------L-QL--------DEVQDST 147 (224)
T ss_dssp -------C-----EEEE--EESCGGGSCHHHHHHHHHHHHHHHTTTC--------------C-CG--------GGSCCCS
T ss_pred -------c-----eEEe--EECCCCCCCHHHHHHHHHHHHHHHHcCC--------------C-Cc--------cccCCCE
Confidence 1 1122 2110123444444444444444444311 1 01 1224578
Q ss_pred eEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCC-----eEEEEEEecCCCCChhHHHHHH
Q 044955 150 LAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMG-----NLRVSLGAEEGFIDSPKLKSCI 214 (244)
Q Consensus 150 ~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~-----~l~lsv~~d~~~~d~~~l~~~~ 214 (244)
.++||+|..- +..+.++. .+++..-+++-.+.. .+.+++++|+.++|....++++
T Consensus 148 ftISnlG~~G---------~~~~tpii-n~pq~aIl~vG~~~~~p~r~~m~lsls~DHRviDGa~aa~Fl 207 (224)
T 3rqc_A 148 FTITNVGTIG---------GIMSTPII-NYPEVAILGVHRILEREGRKYMYLSLSCDHRLIDGAVATRFI 207 (224)
T ss_dssp EEEEECTTTC---------CSEEECCC-CTTBSEEEEECCCEEETTEEECCEEEEEETTTSCHHHHHHHH
T ss_pred EEEEcCCcCC---------ccceEecc-CCCCceEEEecccEEECCceEEEEEEEeccceecHHHHHHHH
Confidence 9999996432 22223332 223322334433332 4889999999998877666653
No 9
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=95.65 E-value=0.32 Score=40.47 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=19.0
Q ss_pred cCCchhHHHHHHHHHHHHHHH
Q 044955 15 LGATLNDVITGTIFLGIRLYM 35 (244)
Q Consensus 15 ~g~TvNDvllaa~a~al~~y~ 35 (244)
.+.|++++++-|++.||+++=
T Consensus 68 ~kls~~~~~ikA~~~Al~~~P 88 (243)
T 1dpb_A 68 VKLTVLPLLLKACAYLLKELP 88 (243)
T ss_dssp CCCCSHHHHHHHHHHHHHHSG
T ss_pred CCCChHHHHHHHHHHHHHhCh
Confidence 589999999999999999863
No 10
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=95.61 E-value=0.33 Score=39.69 Aligned_cols=33 Identities=6% Similarity=-0.086 Sum_probs=30.3
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~~y 34 (244)
++++..+.+.+++.|.|+++.++=|++.||+++
T Consensus 35 evDvt~l~~~rk~~~ls~~~~~ikAv~~Al~~~ 67 (217)
T 2i9d_A 35 EVECGGARQRAKAAGQSFFLHYLYAVLRAANEI 67 (217)
T ss_dssp EEECHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred EEEhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 567888989999999999999999999999986
No 11
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=95.60 E-value=0.17 Score=41.83 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=18.5
Q ss_pred cCCchhHHHHHHHHHHHHHH
Q 044955 15 LGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 15 ~g~TvNDvllaa~a~al~~y 34 (244)
.+.|++++++-|++.||+++
T Consensus 58 ~kls~~~~~ikA~~~Al~~~ 77 (233)
T 1scz_A 58 IRLGFMSFYVKAVVEALKRY 77 (233)
T ss_dssp SCCCSHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHhC
Confidence 58999999999999999976
No 12
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=95.55 E-value=0.13 Score=41.92 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=30.0
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~~y 34 (244)
++++..+.+.+++.|.|+++.++=|++.||+++
T Consensus 33 evDvt~l~~~rk~~~ls~~~~~ikAv~~Al~~~ 65 (213)
T 3cla_A 33 KIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQF 65 (213)
T ss_dssp EEECHHHHHHHHTSSCCHHHHHHHHHHHHHTTC
T ss_pred EEEHHHHHHHHHHhCCCHHHHHHHHHHHHHhhC
Confidence 577888989999999999999999999999976
No 13
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=95.36 E-value=0.27 Score=41.43 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=18.9
Q ss_pred cCCchhHHHHHHHHHHHHHHH
Q 044955 15 LGATLNDVITGTIFLGIRLYM 35 (244)
Q Consensus 15 ~g~TvNDvllaa~a~al~~y~ 35 (244)
.+.|++++++-|++.||+++=
T Consensus 83 ~kls~~~~~ikAva~Al~~~P 103 (262)
T 2ii3_A 83 IKLSFMPFFLKAASLGLLQFP 103 (262)
T ss_dssp CCCCSHHHHHHHHHHHHHHCG
T ss_pred CCccHHHHHHHHHHHHHHhCh
Confidence 589999999999999999863
No 14
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=95.01 E-value=1 Score=36.78 Aligned_cols=33 Identities=0% Similarity=-0.099 Sum_probs=30.1
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~~y 34 (244)
++++..+.+.+++.|.|+++.++=|++.||+++
T Consensus 38 evDvt~l~~~rk~~~ls~~~~~ikAv~~Al~~~ 70 (219)
T 1q23_A 38 QLDITAFLKTVKKNKHKFYPAFIHILARLMNAH 70 (219)
T ss_dssp EEECHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred EEEhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 577888999999999999999999999999976
No 15
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=94.90 E-value=0.24 Score=41.05 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=24.9
Q ss_pred ccChhHHHHHHHH--------cCCchhHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDN--------LGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 2 ~~~l~~vk~ia~~--------~g~TvNDvllaa~a~al~~y 34 (244)
++++..+.+.+++ .+.|++++++-|++.||+++
T Consensus 43 evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~ 83 (239)
T 3b8k_A 43 DVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKV 83 (239)
T ss_dssp EECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHC
T ss_pred EEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhC
Confidence 3455555555333 58999999999999999976
No 16
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=94.25 E-value=0.41 Score=40.02 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=26.8
Q ss_pred ccChhHHHHHHHH-----cCCchhHHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDN-----LGATLNDVITGTIFLGIRLYM 35 (244)
Q Consensus 2 ~~~l~~vk~ia~~-----~g~TvNDvllaa~a~al~~y~ 35 (244)
++++..+.+.+++ .+.|++++++-|++.||+++=
T Consensus 45 evDvt~l~~~r~~~k~~~~kls~~~~iikAva~AL~~~P 83 (250)
T 3l60_A 45 EVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNV 83 (250)
T ss_dssp EEECHHHHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHCG
T ss_pred EEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCH
Confidence 4567777777664 367999999999999999863
No 17
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=94.02 E-value=0.67 Score=38.86 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=18.3
Q ss_pred cCCchhHHHHHHHHHHHHHH
Q 044955 15 LGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 15 ~g~TvNDvllaa~a~al~~y 34 (244)
.+.|++++++-|++.||+++
T Consensus 72 ~kls~~~~iikAva~AL~~~ 91 (256)
T 3mae_A 72 YSLTYFAFFIKAVAQALKEF 91 (256)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHhC
Confidence 46999999999999999986
No 18
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=92.63 E-value=1.5 Score=41.33 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=59.9
Q ss_pred HHHHHHhccCCCcceEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCC--CChhHHHHH
Q 044955 136 TAAKFIHGSLNNSSLAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGF--IDSPKLKSC 213 (244)
Q Consensus 136 ~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~--~d~~~l~~~ 213 (244)
++..-.+......-+..|++|++.. ..+++.|..+.|.+|+-.--++.+.|++++=..- .|.++|.+.
T Consensus 516 lF~dp~~~~~~~~~LSTSq~~~~~~----------~~~gfgPv~~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~ 585 (616)
T 1nm8_A 516 IFMDTSYAIAMHFHLSTSQVPAKTD----------CVMFFGPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHY 585 (616)
T ss_dssp HHHSHHHHHHTCCSEEEEECCCSSS----------CEEECCCSSTTCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHH
T ss_pred cccCchhhhcCCCEEeecCCCCCcc----------CceEEecCCCCeeEEEEEecCCeEEEEEEeCCCCccccHHHHHHH
Confidence 4443334344556788899987642 2345556556788888888899999999984432 489999999
Q ss_pred HHHHHHHHHHhhhcC
Q 044955 214 IENAFEMILDAASAT 228 (244)
Q Consensus 214 ~~~~l~el~~~a~~~ 228 (244)
++++|.|+.+.....
T Consensus 586 L~~al~dm~~ll~~~ 600 (616)
T 1nm8_A 586 LEKALLDMRALLQSH 600 (616)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987743
No 19
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=92.33 E-value=1.8 Score=41.08 Aligned_cols=81 Identities=9% Similarity=-0.026 Sum_probs=59.6
Q ss_pred HHHHHHhccCCCcceEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCC--CChhHHHHH
Q 044955 136 TAAKFIHGSLNNSSLAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGF--IDSPKLKSC 213 (244)
Q Consensus 136 ~~~~~~~~~~~~~t~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~--~d~~~l~~~ 213 (244)
++..-.+......-+..|++|++.- ..+++.|..+.|.+|+-.--++.+.|+|++=..- -|.++|.+.
T Consensus 532 lF~dp~~~~~~~~~LSTSq~~~~~~----------~~~gfgPv~~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~ 601 (639)
T 1t1u_A 532 MFMDETYLMSNRFVLSTSQVPTTME----------MFCCYGPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEA 601 (639)
T ss_dssp HHHSHHHHHHTCCSEEEEECCCSSS----------EEEECCCSSTTCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHH
T ss_pred cccCchhhhhCCCEEEecCCCCCcc----------ccceEcccCCCceEEEEEEcCCeEEEEEEeCCCCcccCHHHHHHH
Confidence 4443333344556788899987632 2346666666788888888899999999985433 389999999
Q ss_pred HHHHHHHHHHhhh
Q 044955 214 IENAFEMILDAAS 226 (244)
Q Consensus 214 ~~~~l~el~~~a~ 226 (244)
++++|.|+.+...
T Consensus 602 L~~al~dm~~ll~ 614 (639)
T 1t1u_A 602 VGASLVDMRDLCS 614 (639)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 20
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=91.60 E-value=1.9 Score=41.06 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=55.6
Q ss_pred CCCcceEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCCCChhHHHHHHHHHHHHHHHh
Q 044955 145 LNNSSLAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGFIDSPKLKSCIENAFEMILDA 224 (244)
Q Consensus 145 ~~~~t~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~~d~~~l~~~~~~~l~el~~~ 224 (244)
....-+..|++|++. ...+++.|..+.|.+|+-.--++.+.|+|++=. --|.++|.+.++++|.|+.+.
T Consensus 577 ~~~~~LSTS~~~~~~----------~~~~gfgPv~~dGyGi~Y~i~~~~i~f~iSs~~-~t~~~~F~~~L~~al~dm~~l 645 (653)
T 2deb_A 577 MNHNILSTSTLNSPA----------VSLGGFAPVVPDGFGIAYAVHDDWIGCNVSSYS-GRNAREFLHCVQKCLEDIFDA 645 (653)
T ss_dssp HTSCSEEEEECCCTT----------EEEEECCCSSTTCEEEEEEECSSCEEEEEEECT-TSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCcEEeecCCCCCc----------cccceeeccCCCceEEEEEecCCeEEEEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 345668889998764 134455555566788888888899999998754 348999999999999999998
Q ss_pred hhcC
Q 044955 225 ASAT 228 (244)
Q Consensus 225 a~~~ 228 (244)
....
T Consensus 646 l~~~ 649 (653)
T 2deb_A 646 LEGK 649 (653)
T ss_dssp HTTC
T ss_pred Hhcc
Confidence 7643
No 21
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=89.66 E-value=2.6 Score=37.80 Aligned_cols=60 Identities=13% Similarity=-0.056 Sum_probs=44.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeecccC
Q 044955 16 GATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQL 90 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~~ 90 (244)
.+|-+|++.|.+-.++.+-. + .++.++..+||+|..... |-+..-.||.+.......+.+
T Consensus 272 ~~St~d~l~A~lWr~~~~Ar------~-~~~~~l~~~vd~R~rl~p--------plP~~Y~GN~~~~~~~~~~~~ 331 (454)
T 2e1v_A 272 YVSSFTVACAYIWSCIAKSR------N-DKLQLFGFPIDRRARMKP--------PIPTAYFGNCVGGCAAIAKTN 331 (454)
T ss_dssp CCCHHHHHHHHHHHHHHHHH------C-CSEEEEEEEEECGGGSSS--------CCCTTBCSCCEEEEEEEEEGG
T ss_pred cccHHHHHHHHHHHHHhhhc------C-CCceEEEEEecchhccCC--------CCCcccccceeeeEEeecchh
Confidence 48999999998887776543 2 367899999999986421 012456899988888888775
No 22
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=89.57 E-value=1.6 Score=39.19 Aligned_cols=66 Identities=15% Similarity=0.010 Sum_probs=46.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhc-C-CCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeecccC
Q 044955 16 GATLNDVITGTIFLGIRLYMQAVN-Q-ESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQL 90 (244)
Q Consensus 16 g~TvNDvllaa~a~al~~y~~~~g-~-~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~~ 90 (244)
.+|-+|++.|.+-.++.+-..... . .+ .++.++..+||+|..... |-+..-.||.+.......+.+
T Consensus 266 ~~St~~~l~A~lW~~~~~Ar~~~~~~~~~-~~~~~l~~~vd~R~rl~p--------plP~~Y~GN~~~~~~~~~~~~ 333 (453)
T 2xr7_A 266 HVTSFTVTCAYVWTCIIKSEAATGEEIDE-NGMEFFGCAADCRAQFNP--------PLPPSYFGNALVGYVARTRQV 333 (453)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCCCT-TSEEEEEEECCTTSCSSS--------CCCTTBCSCCCCEEEEEEEHH
T ss_pred cccHHHHHHHHHHHHHHHHhccccccCCC-CcceEEEEEecccccCCC--------CCCcccccceeeeeeeeeeHH
Confidence 489999999998887776544321 1 23 367899999999986421 012456899888877777764
No 23
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=89.12 E-value=3.4 Score=36.64 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=52.2
Q ss_pred cChhHHHHHHHHc-------CCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCC
Q 044955 3 FPLHQIKQIKDNL-------GATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAP 75 (244)
Q Consensus 3 ~~l~~vk~ia~~~-------g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~ 75 (244)
++-++|++++++. .+|-+|++.|.+-.++.+-...... + .++.++..+||+|..... |-+..-
T Consensus 221 f~~~~i~~LK~~a~~~~~~~~~St~d~l~A~iW~~~~~Ar~~~~~-~-~~~~~l~~~vd~R~rl~p--------plP~~y 290 (421)
T 2bgh_A 221 FDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYG-A-KNKFVVVQAVNLRSRMNP--------PLPHYA 290 (421)
T ss_dssp ECHHHHHHHHHHTC-----CCCCHHHHHHHHHHHHHHHHHHHHSC-C-CSCEEEEEEEESGGGSSS--------CCCTTB
T ss_pred ECHHHHHHHHHHhhccCCCCCCchhHhHHHHHHHHHHHHhcccCC-C-CCceEEEEEecCccccCC--------CCCCCc
Confidence 3445555555543 4899999999888777665433221 2 357889999999986421 012457
Q ss_pred CCceEEEEEeecccC
Q 044955 76 WGNHFAFLHISVPQL 90 (244)
Q Consensus 76 ~gN~~~~~~v~Lp~~ 90 (244)
.||.+.......+.+
T Consensus 291 ~GN~~~~~~~~~~~~ 305 (421)
T 2bgh_A 291 MGNIATLLFAAVDAE 305 (421)
T ss_dssp CSCCEEEEEEEECTT
T ss_pred cceEEEEEEEEeccc
Confidence 899988888887764
No 24
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=85.67 E-value=6.3 Score=37.08 Aligned_cols=71 Identities=15% Similarity=0.052 Sum_probs=52.9
Q ss_pred CCCcceEEeccCCCccceEecCceeeEEeeeecCCCceEEEEEEEeCCeEEEEEEecCCC--CChhHHHHHHHHHHHHHH
Q 044955 145 LNNSSLAITNMMGPVEKMALANHPIKGLYFMVAGSPQSLVVTIVTYMGNLRVSLGAEEGF--IDSPKLKSCIENAFEMIL 222 (244)
Q Consensus 145 ~~~~t~~~SNvpGp~~~l~~~G~~v~~~~~~~~~~~~~l~v~v~Sy~~~l~lsv~~d~~~--~d~~~l~~~~~~~l~el~ 222 (244)
..+.-+..|++ |.. ...+++.|..+.|.+|+-.--++.+.|++++=..- .|.++|.+.++++|.|+.
T Consensus 536 ~~~~~LSTS~~-~~~----------~~~~gfgPv~~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~ 604 (612)
T 1xl7_A 536 GGNFVLSTSLV-GYL----------RVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMI 604 (612)
T ss_dssp TTCCSEEEEEC-CSS----------SCCCBCCCSSTTCEEEEEEEETTEEEEEEEEETTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEecCCC-CCC----------CCCcEEeccCCCeEEEEEEEcCCeEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Confidence 34456788888 543 22345556666788888888899999999984332 489999999999999998
Q ss_pred Hhhh
Q 044955 223 DAAS 226 (244)
Q Consensus 223 ~~a~ 226 (244)
+...
T Consensus 605 ~ll~ 608 (612)
T 1xl7_A 605 QLMN 608 (612)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 25
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=84.76 E-value=1.8 Score=38.67 Aligned_cols=76 Identities=11% Similarity=0.008 Sum_probs=49.7
Q ss_pred cChhHHHHHHHHc-------CCchhHHHHHHHHHHHHHHHHHhcCCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCC
Q 044955 3 FPLHQIKQIKDNL-------GATLNDVITGTIFLGIRLYMQAVNQESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAP 75 (244)
Q Consensus 3 ~~l~~vk~ia~~~-------g~TvNDvllaa~a~al~~y~~~~g~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~ 75 (244)
++-++|++++++. .+|-+|++.|-+-.++.+- ++..+ .++.++.++||+|..... |-+..-
T Consensus 236 fs~~~i~~LK~~a~~~~~~~~~St~dal~A~iWr~~~rA---r~~~~-~~~~~l~~~vd~R~rl~P--------plp~~Y 303 (439)
T 4g22_A 236 LTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKA---RGLEV-DQGTKLYIATDGRARLRP--------SLPPGY 303 (439)
T ss_dssp ECHHHHHHHHHGGGGGGCCCCCCHHHHHHHHHHHHHHHH---TTCCT-TCEEEEEEEEECTTTSSS--------CCCTTB
T ss_pred ECHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHHHh---cCCCC-CCcEEEEEEEcccCCCCC--------CCCCCc
Confidence 3444555555432 3889999999887666543 34333 367899999999986521 012456
Q ss_pred CCceEEEEEeecccC
Q 044955 76 WGNHFAFLHISVPQL 90 (244)
Q Consensus 76 ~gN~~~~~~v~Lp~~ 90 (244)
.||.+.......+.+
T Consensus 304 ~GN~v~~~~~~~~~~ 318 (439)
T 4g22_A 304 FGNVIFTATPIAIAG 318 (439)
T ss_dssp CSCCEEEECCEEEHH
T ss_pred ccceeehhhcceEHH
Confidence 899888777776653
No 26
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=79.57 E-value=19 Score=36.27 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=19.0
Q ss_pred cCCchhHHHHHHHHHHHHHHH
Q 044955 15 LGATLNDVITGTIFLGIRLYM 35 (244)
Q Consensus 15 ~g~TvNDvllaa~a~al~~y~ 35 (244)
.+.|++++++-|++.||+++=
T Consensus 39 ~kls~~~~iikAva~AL~~~P 59 (1113)
T 2xt6_A 39 GKISFTHLLGYAIVQAVKKFP 59 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHCG
T ss_pred CCccHHHHHHHHHHHHHHhCh
Confidence 489999999999999999863
No 27
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=76.03 E-value=3.3 Score=36.89 Aligned_cols=60 Identities=8% Similarity=-0.037 Sum_probs=43.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhc-CCCCCcceEEEEEeeecCCccchhhhhhcCCCCCCCCCceEEEEEeeccc
Q 044955 17 ATLNDVITGTIFLGIRLYMQAVN-QESTNLHSTAVVLLNTRMFKSISSIKEMVKPDSKAPWGNHFAFLHISVPQ 89 (244)
Q Consensus 17 ~TvNDvllaa~a~al~~y~~~~g-~~~~~~~l~~~vPvslR~~~~~~~~~~~~~~~~~~~~gN~~~~~~v~Lp~ 89 (244)
+|-+|++.|.+-.++.+-.. + ..+ .++.++.++||+|...+ -+..-.||.+.......+.
T Consensus 259 ~St~d~l~A~~Wr~~~~Ar~--~~~~~-~~~~~l~~~vd~R~rl~----------lP~~y~GN~~~~~~~~~~~ 319 (451)
T 2rkv_A 259 VSTDDALSAFIWKSASRVRL--ERIDG-SAPTEFCRAVDARPAMG----------VSNNYPGLLQNMTYHNSTI 319 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHT--TTSCT-TSEEEEEEEEECHHHHT----------CCTTCCSCCEEEEEEEEEH
T ss_pred ccHHHHHHHHHHHHHHHHHh--ccCCC-CCceEEEEEecccccCC----------CCCCCcccceeeecccCcH
Confidence 89999999988877765431 2 123 46899999999998642 1346789988877777665
No 28
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=70.25 E-value=6.3 Score=26.02 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.3
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRL 33 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~ 33 (244)
++|+..|++-|.|+|..+..++..++.+
T Consensus 32 ~~L~~~A~~~grSlNaeIv~~Le~sl~~ 59 (69)
T 3qoq_A 32 EQIAEVARSHHRSMNSEIIARLEQSLLQ 59 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999988877763
No 29
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=70.07 E-value=6.9 Score=24.21 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=22.8
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
+.|+..|+..|.|+|..+..++..++.
T Consensus 20 ~~l~~~A~~~grS~N~~i~~~L~~~l~ 46 (53)
T 1baz_A 20 DLVRKVAEENGRSVNSEIYQRVMESFK 46 (53)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 468888999999999999888876654
No 30
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=66.75 E-value=8.1 Score=25.06 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=24.4
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y 34 (244)
+.|+..|++-|.|+|..+..++..++...
T Consensus 20 ~~l~~~A~~~GrSlN~~Iv~~L~~~l~~~ 48 (64)
T 1nla_A 20 DLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (64)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 46788889999999999999998876653
No 31
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=61.15 E-value=13 Score=22.32 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=24.6
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhc
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVN 39 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g 39 (244)
.++|+.+|++.|.|-++++ -.|+..|+.+..
T Consensus 15 ~~~l~~lA~~~~rs~s~li----r~Ai~~yl~~~e 45 (52)
T 2gpe_A 15 RERIKSAATRIDRTPHWLI----KQAIFSYLEQLE 45 (52)
T ss_dssp HHHHHHHHHHTTCCHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHH----HHHHHHHHHHHH
Confidence 3678999999999999985 556677877654
No 32
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=55.52 E-value=7.4 Score=26.41 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.0
Q ss_pred hHHHHHHHHcCCchhHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIF 28 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a 28 (244)
..+|.+|+.-|.|||+++.-.+.
T Consensus 14 ~rLKalAa~qG~SInqli~E~lf 36 (83)
T 2an7_A 14 QSLKALAALQGKTIKQYALERLF 36 (83)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcHHHHHHHHcc
Confidence 36899999999999999998754
No 33
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=54.69 E-value=26 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=32.0
Q ss_pred ccChhHHHHHHHHcCC-chhHHHHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGA-TLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~-TvNDvllaa~a~al~~y~~~ 37 (244)
.+|.+-||.+++..|. .++|=....++.-+..++.+
T Consensus 6 ~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~e 42 (70)
T 1taf_B 6 SISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKR 42 (70)
T ss_dssp CCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999 89999999999888766655
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=54.66 E-value=19 Score=21.66 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=23.3
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhc
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVN 39 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g 39 (244)
.+.|+..|+..|.|.++++-- |+..|+.++.
T Consensus 21 ~~~l~~~a~~~g~s~s~~ir~----ai~~~l~~~~ 51 (55)
T 2k9i_A 21 HDRLMEIAKEKNLTLSDVCRL----AIKEYLDNHD 51 (55)
T ss_dssp HHHHHHHHHHHTCCHHHHHHH----HHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHH----HHHHHHHHhH
Confidence 356888899999999997654 5566776654
No 35
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=53.54 E-value=17 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=22.4
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAV 38 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~ 38 (244)
..+|..|...|.|++|++--++ ++|+.++
T Consensus 47 ~rlK~~Aa~~g~Smsdvvreli----~~~L~~~ 75 (76)
T 1p94_A 47 TRFKAACARKGTSITDVVNQLV----DNWLKEN 75 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH----HHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHH----HHHHHhc
Confidence 4688999999999999987665 5666543
No 36
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=52.60 E-value=16 Score=24.82 Aligned_cols=36 Identities=8% Similarity=0.201 Sum_probs=32.3
Q ss_pred ccChhHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGAT-LNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~T-vNDvllaa~a~al~~y~~~ 37 (244)
.+|.+.|++++++.|++ |++-..-++...+..|+..
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~ 46 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN 46 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHH
Confidence 47889999999999996 9999999999999988876
No 37
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=48.71 E-value=19 Score=25.49 Aligned_cols=36 Identities=8% Similarity=0.242 Sum_probs=32.4
Q ss_pred ccChhHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGAT-LNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~T-vNDvllaa~a~al~~y~~~ 37 (244)
.+|.+.|+++++..|++ |++-..-++...+..|+..
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~ 64 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLES 64 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHH
Confidence 37889999999999996 9999999999999998876
No 38
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=48.30 E-value=32 Score=23.66 Aligned_cols=33 Identities=6% Similarity=0.137 Sum_probs=27.3
Q ss_pred hHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHh
Q 044955 6 HQIKQIKDNLG-ATLNDVITGTIFLGIRLYMQAV 38 (244)
Q Consensus 6 ~~vk~ia~~~g-~TvNDvllaa~a~al~~y~~~~ 38 (244)
+.|++.+...| .|+||+++.+...+-.+-+.++
T Consensus 18 ~lI~~AA~~~G~~s~s~Fv~~aa~~~A~~vi~~~ 51 (90)
T 1y9b_A 18 DLLAKAAALAGMSSINSFVLNAAIEKAKQVIERE 51 (90)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35777888889 5999999999998888877765
No 39
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=43.30 E-value=27 Score=25.53 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=22.9
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
+.|+..|++-|.|+|..+..++..++.
T Consensus 31 ~~La~~Ak~eGrSLN~eIv~~Le~sl~ 57 (120)
T 1u9p_A 31 DLVRKVAEENGRSVNSEIYQRVMESFK 57 (120)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 467888899999999999999887655
No 40
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=43.07 E-value=15 Score=23.89 Aligned_cols=22 Identities=5% Similarity=0.274 Sum_probs=18.7
Q ss_pred ccChhHHHHHHHHcCCchhHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvl 23 (244)
..+++.+.++|+.+|+++.+++
T Consensus 50 ~p~~~~l~~ia~~l~v~~~~l~ 71 (78)
T 3qq6_A 50 NPSIQFLEKVSAVLDVSVHTLL 71 (78)
T ss_dssp CCBHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 3578899999999999998876
No 41
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=39.19 E-value=42 Score=22.43 Aligned_cols=27 Identities=15% Similarity=-0.029 Sum_probs=24.0
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
..+|.-|++.|.|+|+.+..++..++.
T Consensus 14 ~~Lk~rAa~~GrSle~e~r~iL~~a~~ 40 (77)
T 2bsq_E 14 NAIKFRARAAGRSTEAEIRLILDNIAK 40 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 468888999999999999999998876
No 42
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=38.79 E-value=21 Score=23.09 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.2
Q ss_pred ccChhHHHHHHHHcCCchhHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITG 25 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvlla 25 (244)
..+++.+.++++.+|+++.+++--
T Consensus 50 ~~~~~~l~~ia~~l~v~~~~l~~~ 73 (82)
T 3s8q_A 50 NLTIKSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp CCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHhcC
Confidence 357889999999999999988654
No 43
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=37.34 E-value=53 Score=20.37 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=20.8
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~ 37 (244)
.+++..|...|.|+|+++--|+ ..|+.+
T Consensus 26 ~rlk~~Aa~~g~Sln~~i~eAL----~~yl~~ 53 (56)
T 2kel_A 26 TRLKVYCAKNNLQLTQAIEEAI----KEYLQK 53 (56)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH----HHHHHH
Confidence 4678888889999999876555 455544
No 44
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=36.89 E-value=37 Score=23.90 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=31.0
Q ss_pred ccChhHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHHHh
Q 044955 2 TFPLHQIKQIKDNLGAT-LNDVITGTIFLGIRLYMQAV 38 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~T-vNDvllaa~a~al~~y~~~~ 38 (244)
.+|.+.|+++++..|+. |++-..-.+...+..|+.+.
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V 66 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESV 66 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHH
Confidence 37899999999999986 88888888888888887763
No 45
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=36.04 E-value=26 Score=21.43 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=17.8
Q ss_pred cChhHHHHHHHHcCCchhHHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVIT 24 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvll 24 (244)
.+.+.+.++++.+|+++++++.
T Consensus 45 ~~~~~l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 45 PNGENLLALSKALQCSPDYLLK 66 (68)
T ss_dssp CBHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHhc
Confidence 4677888999999999888763
No 46
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=35.43 E-value=14 Score=23.09 Aligned_cols=20 Identities=10% Similarity=0.444 Sum_probs=16.6
Q ss_pred cChhHHHHHHHHcCCchhHH
Q 044955 3 FPLHQIKQIKDNLGATLNDV 22 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDv 22 (244)
.+++.+.++++.+|+++.++
T Consensus 50 ~~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 50 VTVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp CCHHHHHHHHHHHTSCGGGG
T ss_pred CCHHHHHHHHHHHCcCHHHH
Confidence 56788889999999988875
No 47
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=35.43 E-value=19 Score=22.84 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=17.9
Q ss_pred ccChhHHHHHHHHcCCchhHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvl 23 (244)
..+++.+.++++.+|+++.+++
T Consensus 47 ~~~~~~l~~ia~~l~~~~~~l~ 68 (78)
T 3b7h_A 47 RPTITTIRKVCGTLGISVHDFF 68 (78)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHh
Confidence 3567888899999999988765
No 48
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=35.39 E-value=22 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.7
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+++.+.++++.+|+++++++
T Consensus 42 p~~~~l~~ia~~l~v~~~~l~ 62 (77)
T 2k9q_A 42 PVVVKYIAFLRSKGVDLNALF 62 (77)
T ss_dssp CHHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHh
Confidence 456778888999999888765
No 49
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=35.08 E-value=27 Score=22.06 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.6
Q ss_pred cChhHHHHHHHHcCCchhHHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVIT 24 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvll 24 (244)
.+++.+.++++.+|+++.+++-
T Consensus 50 ~~~~~l~~la~~l~~~~~~l~~ 71 (77)
T 2b5a_A 50 ISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp CBHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHhc
Confidence 5678899999999999988764
No 50
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=34.85 E-value=98 Score=20.45 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=26.7
Q ss_pred eEEEEEEEe-CCeEEEEEEecCCCC-ChhHHHHHHHHH
Q 044955 182 SLVVTIVTY-MGNLRVSLGAEEGFI-DSPKLKSCIENA 217 (244)
Q Consensus 182 ~l~v~v~Sy-~~~l~lsv~~d~~~~-d~~~l~~~~~~~ 217 (244)
.+.|+|++. +|++++|+.+.+.+. .=+++.+..+++
T Consensus 29 dI~ItVl~i~g~qVrLGI~APk~V~I~R~Eiy~~i~~e 66 (73)
T 1vpz_A 29 DVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKE 66 (73)
T ss_dssp TEEEEEEEEETTEEEEEEEEETTSCEEEHHHHHHHHHH
T ss_pred CEEEEEEEEeCCEEEEEEECCCCCeEeHHHHHHHHHHH
Confidence 567777766 889999999999885 666666555443
No 51
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=34.81 E-value=14 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=17.4
Q ss_pred ccChhHHHHHHHHcCCchhHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvl 23 (244)
..+++.+.++++.+|+++.+++
T Consensus 47 ~~~~~~l~~ia~~l~v~~~~l~ 68 (73)
T 3omt_A 47 QPSLETLFDIAEALNVDVRELI 68 (73)
T ss_dssp CCCHHHHHHHHHHHTSCGGGGB
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 3567888899999999888764
No 52
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=34.76 E-value=42 Score=23.59 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=30.3
Q ss_pred cChhHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHHH
Q 044955 3 FPLHQIKQIKDNLGAT-LNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~T-vNDvllaa~a~al~~y~~~ 37 (244)
+|.+.|+++++..|+. |++-..-.+...|..|+.+
T Consensus 30 ip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~ 65 (103)
T 1tzy_D 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN 65 (103)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHH
Confidence 7889999999999985 8888888888888888776
No 53
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=34.27 E-value=28 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.7
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+++.+.++++.+|+++++++
T Consensus 55 p~~~~l~~ia~~l~v~~~~l~ 75 (86)
T 2ofy_A 55 PAFFTIAAVARVLDLSLDDVA 75 (86)
T ss_dssp CBHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHh
Confidence 567889999999999998874
No 54
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.06 E-value=29 Score=21.80 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=17.5
Q ss_pred cChhHHHHHHHHcCCchhHHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVIT 24 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvll 24 (244)
.+.+.+.++++.+|+++++++.
T Consensus 45 ~~~~~l~~ia~~l~~~~~~l~~ 66 (76)
T 1adr_A 45 PNGENLLALSKALQCSPDYLLK 66 (76)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhc
Confidence 4677888899999998887754
No 55
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=32.69 E-value=21 Score=21.70 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=16.3
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.+.+.++++.+|+++++++
T Consensus 41 ~~~~~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 41 PSLQLALKIAYYLNTPLEDIF 61 (66)
T ss_dssp CCHHHHHHHHHHTTSCHHHHE
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 466778888888888887764
No 56
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=32.31 E-value=1e+02 Score=19.78 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=27.1
Q ss_pred ceEEEEEEEe-CCeEEEEEEecCCCC-ChhHHHHHHHHH
Q 044955 181 QSLVVTIVTY-MGNLRVSLGAEEGFI-DSPKLKSCIENA 217 (244)
Q Consensus 181 ~~l~v~v~Sy-~~~l~lsv~~d~~~~-d~~~l~~~~~~~ 217 (244)
..+.|+|.+. +|++++|+.+.+.++ +=+++.+...++
T Consensus 18 d~I~I~Vl~i~g~~VrlGI~AP~~v~I~R~Ei~~~i~~e 56 (63)
T 2bti_A 18 DEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAE 56 (63)
T ss_dssp TTEEEEEEEEETTEEEEEEEECTTSCEEEHHHHHHHHHH
T ss_pred CCEEEEEEEEeCCEEEEEEECCCCCcEeHHHHHHHHHHH
Confidence 3567777766 789999999999885 666666555443
No 57
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=31.87 E-value=42 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.3
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
..++..|+..|.|+|..+..++..++.
T Consensus 17 ~~L~~~A~~~grSlN~~I~~~L~~al~ 43 (76)
T 1mnt_A 17 EKLKFRAEANGRSMNSELLQIVQDALS 43 (76)
T ss_dssp HHHHHTHHHHTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 467788888999999999888877664
No 58
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=31.69 E-value=88 Score=23.50 Aligned_cols=41 Identities=17% Similarity=0.062 Sum_probs=26.8
Q ss_pred EEEEEEEeCCeEEEEEEecCCC--C-ChhHHHHHHHHHHHHHHHhh
Q 044955 183 LVVTIVTYMGNLRVSLGAEEGF--I-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 183 l~v~v~Sy~~~l~lsv~~d~~~--~-d~~~l~~~~~~~l~el~~~a 225 (244)
+.|++..-+.-+ +|..|+.+ | |.+.|.|++.+++++-.+.+
T Consensus 78 VkVtvnG~~ev~--~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka 121 (143)
T 1ybx_A 78 VTVVATGRKDIK--EITIKPEVVDPDDVEMLQDLILAAVNEALRKA 121 (143)
T ss_dssp EEEEEETTCCEE--EEEECGGGCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCceEE--EEEECHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 455555444444 44446654 5 88999999999988765554
No 59
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=31.32 E-value=6.8 Score=22.68 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=2.5
Q ss_pred CcceEEeccCCCccce
Q 044955 147 NSSLAITNMMGPVEKM 162 (244)
Q Consensus 147 ~~t~~~SNvpGp~~~l 162 (244)
......||+|||....
T Consensus 13 s~l~~aS~iPGPVG~~ 28 (40)
T 1f8v_D 13 QISGTLSVIPGPVGTI 28 (40)
T ss_dssp HTCCC-----------
T ss_pred HHHHHHhcCCCchhHH
Confidence 3445679999998754
No 60
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=31.24 E-value=34 Score=20.39 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=19.1
Q ss_pred hHHHHHHHHcCCchhHHHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGTIF 28 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a 28 (244)
+.|++.|+..|.|+.|++-.++.
T Consensus 28 ~~l~~~A~~~g~s~SeyiR~~~l 50 (51)
T 2ba3_A 28 ETIRKKAEDSGLTVSAYIRNAAL 50 (51)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHc
Confidence 56788889999999999987654
No 61
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=31.19 E-value=31 Score=22.24 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=19.5
Q ss_pred ccChhHHHHHHHHcCCchhHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITG 25 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvlla 25 (244)
..+++.+.++++.+|+++.+++-.
T Consensus 53 ~~~~~~l~~l~~~l~~~~~~l~~~ 76 (83)
T 3f6w_A 53 RLDVIEFMDFCRGIGTDPYALLSK 76 (83)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 357888999999999999887643
No 62
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.70 E-value=33 Score=23.53 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.6
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGT 26 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa 26 (244)
..+++.+.++++.+|+++.+++-.-
T Consensus 67 ~ps~~~l~~ia~~l~v~~~~l~~~~ 91 (99)
T 3g5g_A 67 NLTIKSLELIMKGLEVSDVVFFEML 91 (99)
T ss_dssp CCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHhccC
Confidence 3578899999999999999886543
No 63
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Probab=29.70 E-value=91 Score=22.86 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.6
Q ss_pred hHHHHHHHHcCCchhHHHHHH
Q 044955 6 HQIKQIKDNLGATLNDVITGT 26 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa 26 (244)
+.+++||++-|+|+|.++.-+
T Consensus 40 ~~L~eIA~~~g~tv~~Lia~I 60 (125)
T 3kk4_A 40 DVLEEIAARDGMRVTQLIERL 60 (125)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 568999999999999988775
No 64
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=28.05 E-value=57 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=21.7
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHH
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGI 31 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al 31 (244)
...||..|++.|.|.++++...+....
T Consensus 14 ~~~L~~rAa~~G~S~~~ylr~~Le~~a 40 (73)
T 3h87_C 14 LASLDAIAARLGLSRTEYIRRRLAQDA 40 (73)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 356888899999999999988776543
No 65
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=27.67 E-value=84 Score=17.70 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=21.2
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRLYMQ 36 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~ 36 (244)
++++.+.+++.|.|-++++-- |++.|+.
T Consensus 14 ~~~Ld~~a~~~g~srS~~ir~----ai~~~l~ 41 (45)
T 2cpg_A 14 LENLEKMAREMGLSKSAMISV----ALENYKK 41 (45)
T ss_dssp HHHHHHHHHHHTCCHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHH----HHHHHHH
Confidence 467888999999999887654 5566665
No 66
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=26.34 E-value=1.2e+02 Score=21.22 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCCC-ChhHHHHHHHHHHHHHHHhh
Q 044955 192 GNLRVSLGAEEGFI-DSPKLKSCIENAFEMILDAA 225 (244)
Q Consensus 192 ~~l~lsv~~d~~~~-d~~~l~~~~~~~l~el~~~a 225 (244)
+.-..++..|+.+. |.+.|.|++..++++-.+.+
T Consensus 47 ~~ev~~i~Idp~~~eD~E~LeDLI~aA~ndA~~k~ 81 (99)
T 3f42_A 47 LGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAV 81 (99)
T ss_dssp TSCEEEEEECGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 33445556677664 89999999998888765544
No 67
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=25.85 E-value=68 Score=23.38 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=25.1
Q ss_pred hhHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 044955 5 LHQIKQIKDNLGATLNDVITGTIFLGIRL 33 (244)
Q Consensus 5 l~~vk~ia~~~g~TvNDvllaa~a~al~~ 33 (244)
+++++++++..+.+|||-++.-+..+|..
T Consensus 75 ~~~ir~~a~~~~~s~~~ei~~r~~~~~~~ 103 (120)
T 1u9p_A 75 LDLVRKVAEENGRSVNSEIYQRVMESFKK 103 (120)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46899999999999999999888877753
No 68
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=25.81 E-value=42 Score=23.40 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.6
Q ss_pred cChhHHHHHHHHcCCchhHHHHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVITGT 26 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvllaa 26 (244)
.+++.+.++++.+|+++.+++...
T Consensus 68 ~~~~~l~~la~~l~v~~~~l~~~~ 91 (117)
T 3f52_A 68 VSSELLASVCHALGASVADVLIEA 91 (117)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHhcc
Confidence 578899999999999999987643
No 69
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.71 E-value=43 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=15.6
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.+.+.++++.+|+++.+++
T Consensus 49 p~~~~l~~ia~~l~v~~~~l~ 69 (94)
T 2kpj_A 49 PRMGKVQALADYFNINKSDLI 69 (94)
T ss_dssp CCHHHHHHHHHHHTCCTHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 356778888888888887764
No 70
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=25.28 E-value=1.4e+02 Score=19.05 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=31.2
Q ss_pred ccChhHHHHHHHHcCC-chhHHHHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGA-TLNDVITGTIFLGIRLYMQA 37 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~-TvNDvllaa~a~al~~y~~~ 37 (244)
.+|.+.|+++.|+.|+ -+.+-...++..++.+|+..
T Consensus 6 ~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~ 42 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIE 42 (70)
T ss_dssp CSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHH
Confidence 6899999999998864 78888999999999998875
No 71
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=25.20 E-value=1.1e+02 Score=18.90 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=23.9
Q ss_pred hHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 044955 6 HQIKQIKDNLGATLNDVITGTIFLGIRLYMQAV 38 (244)
Q Consensus 6 ~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~ 38 (244)
++|+++|++.|.|-+.++ -.|+..|+.+.
T Consensus 16 ~rL~~lA~~~~rs~s~li----reAi~~yl~~~ 44 (58)
T 2ay0_A 16 ERIKSAATRIDRTPHWLI----KQAIFSYLEQL 44 (58)
T ss_dssp HHHHHHHHHTTCCHHHHH----HHHHHHHHHHC
T ss_pred HHHHHHHHHHCcCHHHHH----HHHHHHHHHHH
Confidence 578999999999999985 56777887764
No 72
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=24.98 E-value=1e+02 Score=19.22 Aligned_cols=31 Identities=6% Similarity=0.157 Sum_probs=27.0
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
+++-++|+++-++-|+.|.+.-...++.+|.
T Consensus 16 ~~t~~~I~~il~aaGveve~~~~~~~~~~L~ 46 (58)
T 3a1y_A 16 EINEENLKAVLQAAGVEPEEARIKALVAALE 46 (58)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHC
Confidence 4567899999999999999999999888774
No 73
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.67 E-value=27 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=16.1
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.+.+.++++.+|+++++++
T Consensus 50 ~~~~~l~~ia~~l~~~~~~l~ 70 (76)
T 3bs3_A 50 PSLDMLVKVAELLNVDPRQLI 70 (76)
T ss_dssp CCHHHHHHHHHHHTSCGGGGB
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 456778888888888887764
No 74
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=24.54 E-value=54 Score=24.14 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=39.1
Q ss_pred cChhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcC--CCCCcceEEEEE
Q 044955 3 FPLHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQ--ESTNLHSTAVVL 52 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~--~~~~~~l~~~vP 52 (244)
+.++.+|.|-..+|-...|-+|..++..|+.++...+. .-.....-+.+|
T Consensus 50 i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~~~~~~R~~~d~F~ill~ 101 (177)
T 3hva_A 50 IHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFK 101 (177)
T ss_dssp EEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEEECSSSEEEEEEE
T ss_pred EeCCCHHHHHHHhCchhHHHHHHHHHHHHHHhCCCCceEEEecCCeEEEEeC
Confidence 57889999999999999999999999999998876432 122345666665
No 75
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=23.91 E-value=1e+02 Score=20.23 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=25.9
Q ss_pred eEEEEEEEe-CCeEEEEEEecCCCC-ChhHHHHHHHH
Q 044955 182 SLVVTIVTY-MGNLRVSLGAEEGFI-DSPKLKSCIEN 216 (244)
Q Consensus 182 ~l~v~v~Sy-~~~l~lsv~~d~~~~-d~~~l~~~~~~ 216 (244)
.+.|+|++. +|+++||+.+.+.++ .=+++.+..++
T Consensus 17 ~I~ItVl~v~g~~VrLGI~APk~v~I~R~Ei~~~i~~ 53 (70)
T 2jpp_A 17 DITITILGVSGQQVRIGINAPKDVAVHREEIYQRIQA 53 (70)
T ss_dssp TEEEEEEEEETTEEEEEEECCTTSCEEEHHHHHHHTC
T ss_pred CEEEEEEEEeCCEEEEEEECCCCCcEeHHHHHHHHHH
Confidence 566777766 789999999999885 66666655443
No 76
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=23.85 E-value=48 Score=22.94 Aligned_cols=21 Identities=0% Similarity=0.270 Sum_probs=16.3
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+++.+.++|+.+|+++.+++
T Consensus 49 p~~~~l~~la~~l~v~~~~l~ 69 (114)
T 3op9_A 49 PDIEKLIRLATYFHLSIDELV 69 (114)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHh
Confidence 467788888888888887654
No 77
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=23.75 E-value=38 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.3
Q ss_pred ccChhHHHHHHHHcCCchhHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITG 25 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvlla 25 (244)
..+++.+.++++.+|+++.+++..
T Consensus 60 ~p~~~~l~~ia~~l~v~~~~l~~~ 83 (114)
T 3vk0_A 60 NIALSNIEKMAAALGVAAYQLLLP 83 (114)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHTSC
T ss_pred CCCHHHHHHHHHHhCCCHHHHhCC
Confidence 357889999999999999988654
No 78
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=23.38 E-value=46 Score=23.55 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=17.5
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+++.+.++|+.+|+++.+++
T Consensus 52 p~~~~l~~ia~~l~v~~~~l~ 72 (126)
T 3ivp_A 52 PSLQVLYDLVSLLNVSVDEFF 72 (126)
T ss_dssp CCHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 567888899999999988875
No 79
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=23.35 E-value=49 Score=21.18 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.6
Q ss_pred cChhHHHHHHHHcC--CchhHH
Q 044955 3 FPLHQIKQIKDNLG--ATLNDV 22 (244)
Q Consensus 3 ~~l~~vk~ia~~~g--~TvNDv 22 (244)
+|.+.+.++++.+| ++++++
T Consensus 37 ~p~~~l~~ia~~l~~~v~~~~l 58 (79)
T 3bd1_A 37 VPAERCIDIERVTNGAVICREL 58 (79)
T ss_dssp CCGGGHHHHHHHTTTSSCHHHH
T ss_pred CCHHHHHHHHHHHCCCCcHHHh
Confidence 56788999999999 888765
No 80
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=22.81 E-value=40 Score=21.70 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=17.5
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.+.+.++++.+|+++.|+.
T Consensus 52 ~~~~~~~~ia~~l~v~~~~l~ 72 (80)
T 3kz3_A 52 LNAYNAALLAKILKVSVEEFS 72 (80)
T ss_dssp CCHHHHHHHHHHHTSCGGGTC
T ss_pred CCHHHHHHHHHHhCCCHHHHh
Confidence 467889999999999998764
No 81
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.92 E-value=55 Score=22.24 Aligned_cols=21 Identities=5% Similarity=0.279 Sum_probs=15.3
Q ss_pred cChhHHHHHHHHcCCchhHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvl 23 (244)
.+.+.+.++++.+|+++++++
T Consensus 42 p~~~~l~~ia~~l~v~~~~l~ 62 (111)
T 1b0n_A 42 PSIQFLEKVSAVLDVSVHTLL 62 (111)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 456777888888888876654
No 82
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=21.17 E-value=23 Score=20.89 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=10.3
Q ss_pred cceEEeccCCCccc
Q 044955 148 SSLAITNMMGPVEK 161 (244)
Q Consensus 148 ~t~~~SNvpGp~~~ 161 (244)
.....||+|||...
T Consensus 14 ~l~~aS~iPGPVG~ 27 (44)
T 1nov_D 14 GLNFASTIPGPVGV 27 (44)
T ss_pred HHHHHhcCCCchhH
Confidence 34556999999864
No 83
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=21.06 E-value=70 Score=23.78 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcC--CCCCcceEEEEEe
Q 044955 4 PLHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQ--ESTNLHSTAVVLL 53 (244)
Q Consensus 4 ~l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~--~~~~~~l~~~vPv 53 (244)
.++.+|.|-+.+|-..-|-+|..++..|++.+.. +. .-.....-+.+|-
T Consensus 37 ~id~f~~in~~~G~~~gD~~L~~ia~~L~~~~~~-~~v~R~~~deF~ill~~ 87 (176)
T 3hvw_A 37 PLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD-FTLYKISPTRFGLLLPR 87 (176)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTT-SCEEEEETTEEEEEEEG
T ss_pred CHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCC-CeEEEecCCEEEEEeCC
Confidence 4499999999999999999999999999988765 42 1112455556653
No 84
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=20.94 E-value=42 Score=22.62 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=18.3
Q ss_pred cChhHHHHHHHHcCCchhHHHH
Q 044955 3 FPLHQIKQIKDNLGATLNDVIT 24 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvll 24 (244)
.+++.+.++++.+|+++++++.
T Consensus 45 p~~~~l~~la~~l~v~~~~l~~ 66 (98)
T 3lfp_A 45 PDFEMANRLAKVLKIPVSYLYT 66 (98)
T ss_dssp CCHHHHHHHHHHHTSCGGGGGC
T ss_pred CCHHHHHHHHHHHCcCHHHHhC
Confidence 5678889999999999988753
No 85
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=20.87 E-value=1e+02 Score=21.79 Aligned_cols=31 Identities=0% Similarity=0.068 Sum_probs=28.2
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
+++-++|++|-++.|+.|.+.-+..++.+|.
T Consensus 20 ~~tad~I~~ilkAaGveVe~~~~~lfa~aL~ 50 (106)
T 3izc_t 20 EISSEKLLTLTNAANVPDENIWADIFAKALD 50 (106)
T ss_dssp CCSHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 5678899999999999999999999998885
No 86
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=20.26 E-value=84 Score=20.42 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=27.4
Q ss_pred ccChhHHHHHHHHcCCchhHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLGATLNDVITGTIFLGIR 32 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g~TvNDvllaa~a~al~ 32 (244)
+++-++|+++-++-|+.|.+.-...++.+|.
T Consensus 22 ~~ta~~I~~il~AaGveve~~~~~lf~~aL~ 52 (69)
T 2lbf_A 22 TVTEDKINALIKAAGVNVEPFWPGLFAKALA 52 (69)
T ss_dssp CCCHHHHHHHHHHHTCCCCTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHC
Confidence 4667899999999999999999999988774
No 87
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.16 E-value=53 Score=20.12 Aligned_cols=20 Identities=10% Similarity=-0.140 Sum_probs=14.3
Q ss_pred ChhHHHHHHHHcCCchhHHH
Q 044955 4 PLHQIKQIKDNLGATLNDVI 23 (244)
Q Consensus 4 ~l~~vk~ia~~~g~TvNDvl 23 (244)
|...+..+++.+|+++++++
T Consensus 43 ~~~~l~~i~~~l~~~~~~l~ 62 (71)
T 1zug_A 43 RPRFLFEIAMALNCDPVWLQ 62 (71)
T ss_dssp SCSTHHHHHHHTTSCHHHHH
T ss_pred ChHHHHHHHHHHCCCHHHHh
Confidence 33447788888888887765
No 88
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=20.14 E-value=58 Score=25.01 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=37.8
Q ss_pred cChhHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcC--CCCCcceEEEEE
Q 044955 3 FPLHQIKQIKDNLGATLNDVITGTIFLGIRLYMQAVNQ--ESTNLHSTAVVL 52 (244)
Q Consensus 3 ~~l~~vk~ia~~~g~TvNDvllaa~a~al~~y~~~~g~--~~~~~~l~~~vP 52 (244)
++++.+|.|=..+|-.+.|-+|-.++..|+.++...+. .-......+.+|
T Consensus 39 iDiD~FK~INd~~Gh~~GD~vL~~va~~L~~~~~~~~~v~R~gGDEF~ill~ 90 (179)
T 3tvk_A 39 LDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVK 90 (179)
T ss_dssp EEETTHHHHHHHHCHHHHHHHHHHHHHHHHHTSCTTSCEEECSSSEEEEEEE
T ss_pred EECCCCcHHHhccCchhHHHHHHHHHHHhHhcCCcccEEEEccCCEEEEEcC
Confidence 67899999999999999999999999999987754332 111234555555
No 89
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=20.01 E-value=22 Score=31.78 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=0.0
Q ss_pred ccChhHHHHHHHHcC---------CchhHHHHHHHHHHHHHH
Q 044955 2 TFPLHQIKQIKDNLG---------ATLNDVITGTIFLGIRLY 34 (244)
Q Consensus 2 ~~~l~~vk~ia~~~g---------~TvNDvllaa~a~al~~y 34 (244)
++++..+.+.+++++ .|++++++-|++.||++|
T Consensus 229 evDvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~ 270 (428)
T 3dva_I 229 EADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREY 270 (428)
T ss_dssp ------------------------------------------
T ss_pred EEeHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhC
Confidence 456666666666554 799999999999999986
Done!