BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044959
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WH7|A Chain A, Solution Structure Of Homeobox Domain Of Arabidopsis
           Thaliana Hypothetical Protein F22k18.140
          Length = 80

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)

Query: 79  RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWL 127
           RTK T EQK KM  FA++LGW+ Q+HD+  V +FC E G+ R++ K+W+
Sbjct: 21  RTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWM 69


>pdb|1WH5|A Chain A, Solution Structure Of Homeobox Domain Of
           Arabidopsisthaliana Zinc Finger Homeobox Family Protein
          Length = 80

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 76  KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWL 127
           K  RTK T EQK +M   A+++GW+ QR D+E + +FC E G+ R++ KVWL
Sbjct: 18  KRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWL 69


>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
           Binding Transcription Factor 1 (Atbf1)
          Length = 70

 Score = 27.7 bits (60), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 75  AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWL 127
            K  RT+IT++Q   +R++ D +   P    EE++ +   + G+ +K+ K W 
Sbjct: 7   GKRPRTRITDDQLRVLRQYFD-INNSPS---EEQIKEMADKSGLPQKVIKHWF 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,795,679
Number of Sequences: 62578
Number of extensions: 112663
Number of successful extensions: 228
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 4
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)