BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044959
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 88/165 (53%), Gaps = 35/165 (21%)
Query: 2 YRECRRNHAASIGRYAYDGCGEFLKAGKDGTKEAFHCAACGCHRSFHRKELSLSVASIHR 61
YREC +NHA +IG +A DGC EF+ +G+DGT +A CAACGCHR+FHRKE HR
Sbjct: 49 YRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHR 108
Query: 62 -----RRRHHDHEHKNY------------------------------KAKTKRTKITEEQ 86
R H+ Y K RTK T EQ
Sbjct: 109 VPTYYNRPPQPHQPPGYLHLTSPAAPYRPPAASGDEEDTSNPSSSGGTTKRFRTKFTAEQ 168
Query: 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131
K KM FA++LGW+ Q+HD+ V +FC E G+ R++ K+W++NN+
Sbjct: 169 KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNK 213
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 47/183 (25%)
Query: 2 YRECRRNHAASIGRYAYDGCGEFLKAGKDGTKEAFHCAACGCHRSFHRKELSL------- 54
+REC +N A +IG +A DGCGEF+ AG +GT +A CAACGCHR+FHRKEL
Sbjct: 75 FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELPYFHHAPPQ 134
Query: 55 -------------------------------SVASIHRRRRHHDHEHKNYKA-----KTK 78
++ R R E + +A K
Sbjct: 135 HQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGGGIRKRH 194
Query: 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR----RRP 134
RTK T EQK +M A+++GW+ QR D+E + +FC E G+ R++ KVWL+NN+ + P
Sbjct: 195 RTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSP 254
Query: 135 VPV 137
P+
Sbjct: 255 SPL 257
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 87/182 (47%), Gaps = 52/182 (28%)
Query: 2 YRECRRNHAASIGRYAYDGCGEFLKAGKDGTKE--AFHCAACGCHRSFHRKELS------ 53
Y+EC +NHAA++G +A DGCGEF+ + + + + CAACGCHR+FHR++ S
Sbjct: 31 YKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLNFL 90
Query: 54 -------------------------------------LSVASIHRRRRHHD-------HE 69
LS++S D +
Sbjct: 91 TAPPISSPSGTESPPSRHVSSPVPCSYYTSAPPHHVILSLSSGFPGPSDQDPTVVRSENS 150
Query: 70 HKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129
+ K RTK T EQK KMR FA+K GWK DE+ V +FC EVGI R + KVW++N
Sbjct: 151 SRGAMRKRTRTKFTPEQKIKMRAFAEKAGWKINGCDEKSVREFCNEVGIERGVLKVWMHN 210
Query: 130 NR 131
N+
Sbjct: 211 NK 212
>sp|Q1AU23|RPOC_RUBXD DNA-directed RNA polymerase subunit beta' OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpoC PE=3
SV=1
Length = 1295
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 108 EVGKFCGEVG--ITRKMFKVWLNN-NRRRPVPVRVPEKC 143
E G+ E G ITR +F+ WL R VPVR P KC
Sbjct: 937 ETGEVVAEAGTDITRPLFEAWLEELPRETKVPVRTPTKC 975
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131
AK RT IT +Q ++ A KP RH E++ E G+ ++ +VW N R
Sbjct: 160 AKRPRTTITAKQLETLKS-AYNTSPKPARHVREQLSS---ETGLDMRVVQVWFQNRR 212
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131
AK RT IT +Q ++ A KP RH E++ E G+ ++ +VW N R
Sbjct: 157 AKRPRTTITAKQLETLKS-AYNTSPKPARHVREQLSS---ETGLDMRVVQVWFQNRR 209
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRR 133
AK RT IT +Q ++ A K KP RH E++ E G+ ++ +VW N R +
Sbjct: 157 AKRPRTTITAKQLETLKN-AYKNSPKPARHVREQLSS---ETGLDMRVVQVWFQNRRAK 211
>sp|P09145|HMEN_DROVI Segmentation polarity homeobox protein engrailed OS=Drosophila
virilis GN=en PE=3 SV=1
Length = 584
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 61 RRRRHHDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITR 120
R RR + K K RT + EQ ++++R ++ + +R ++ E+G+
Sbjct: 472 RYRRPKQPKDKTNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQ----LSSELGLNE 527
Query: 121 KMFKVWLNNNRRR 133
K+W N R +
Sbjct: 528 AQIKIWFQNKRAK 540
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRR 133
AK RT IT +Q ++ A K KP RH E++ E G+ ++ +VW N R +
Sbjct: 157 AKRPRTTITAKQLETLKN-AYKNSPKPARHVREQLSS---ETGLDMRVVQVWFQNRRAK 211
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRR 133
AK RT IT +Q ++ A KP RH E++ E G+ ++ +VW N R +
Sbjct: 142 AKRPRTTITAKQLETLKS-AYNTSPKPARHVREQLSS---ETGLDMRVVQVWFQNRRAK 196
>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engrailed OS=Drosophila
melanogaster GN=en PE=1 SV=2
Length = 552
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 61 RRRRHHDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITR 120
R RR + K K RT + EQ ++++R ++ + +R ++ E+G+
Sbjct: 440 RYRRPKQPKDKTNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQ----LSSELGLNE 495
Query: 121 KMFKVWLNNNRRR 133
K+W N R +
Sbjct: 496 AQIKIWFQNKRAK 508
>sp|P41934|HM18_CAEEL Homeobox protein ceh-18 OS=Caenorhabditis elegans GN=ceh-18 PE=2
SV=1
Length = 542
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 44 HRSFHRKELSLSVASIHRRRRHHDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQR 103
H H +S S++S+ +H K + KRT + Q++ + F P R
Sbjct: 392 HVDIHETSISNSISSVTASSLLSREQH--VKRRRKRTNLDMNQRNALDTF---FALNP-R 445
Query: 104 HDEEEVGKFCGEVGITRKMFKVWLNNNRRR 133
D +++ + + R + +VW N R++
Sbjct: 446 PDHDKMTDIANSLELDRDVVRVWFCNRRQK 475
>sp|Q8IRC7|AWH_DROME LIM/homeobox protein Awh OS=Drosophila melanogaster GN=Awh PE=1
SV=1
Length = 275
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 73 YKAKTKRTKIT-EEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131
+K+KTKR + T E++ ++ + ++ P D E + G+++++ +VW N+R
Sbjct: 144 HKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASV---TGLSKRVTQVWFQNSR 200
Query: 132 RR 133
R
Sbjct: 201 AR 202
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRR 133
AK RT IT +Q ++ A KP RH E++ E G+ ++ +VW N R +
Sbjct: 154 AKRPRTTITAKQLETLKN-AYNNSPKPARHVREQLST---ETGLDMRVVQVWFQNRRAK 208
>sp|P53411|LHX1_CHICK LIM/homeobox protein Lhx1 OS=Gallus gallus GN=LHX1 PE=2 SV=1
Length = 406
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 53 SLSVASIHRRRRHHDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKF 112
S +V+ +D ++ K + RT I +Q ++ A KP RH E++ +
Sbjct: 158 SANVSDKETGSNENDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ- 215
Query: 113 CGEVGITRKMFKVWLNNNRRR 133
E G+ ++ +VW N R +
Sbjct: 216 --ETGLNMRVIQVWFQNRRSK 234
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131
AK RT IT +Q ++ A KP RH E++ E G+ ++ +VW N R
Sbjct: 154 AKRPRTTITAKQLETLKN-AYNNSPKPARHVREQLSS---ETGLDMRVVQVWFQNRR 206
>sp|P48742|LHX1_HUMAN LIM/homeobox protein Lhx1 OS=Homo sapiens GN=LHX1 PE=1 SV=2
Length = 406
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 66 HDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKV 125
+D ++ K + RT I +Q ++ A KP RH E++ + E G+ ++ +V
Sbjct: 171 NDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ---ETGLNMRVIQV 226
Query: 126 WLNNNRRR 133
W N R +
Sbjct: 227 WFQNRRSK 234
>sp|Q5IS89|LHX1_SAIBB LIM/homeobox protein Lhx1 OS=Saimiri boliviensis boliviensis
GN=LHX1 PE=2 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 66 HDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKV 125
+D ++ K + RT I +Q ++ A KP RH E++ + E G+ ++ +V
Sbjct: 171 NDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ---ETGLNMRVIQV 226
Query: 126 WLNNNRRR 133
W N R +
Sbjct: 227 WFQNRRSK 234
>sp|P63007|LHX1_RAT LIM/homeobox protein Lhx1 OS=Rattus norvegicus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 66 HDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKV 125
+D ++ K + RT I +Q ++ A KP RH E++ + E G+ ++ +V
Sbjct: 171 NDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ---ETGLNMRVIQV 226
Query: 126 WLNNNRRR 133
W N R +
Sbjct: 227 WFQNRRSK 234
>sp|Q5IS44|LHX1_PANTR LIM/homeobox protein Lhx1 OS=Pan troglodytes GN=LHX1 PE=2 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 66 HDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKV 125
+D ++ K + RT I +Q ++ A KP RH E++ + E G+ ++ +V
Sbjct: 171 NDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ---ETGLNMRVIQV 226
Query: 126 WLNNNRRR 133
W N R +
Sbjct: 227 WFQNRRSK 234
>sp|P63006|LHX1_MOUSE LIM/homeobox protein Lhx1 OS=Mus musculus GN=Lhx1 PE=1 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 66 HDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKV 125
+D ++ K + RT I +Q ++ A KP RH E++ + E G+ ++ +V
Sbjct: 171 NDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ---ETGLNMRVIQV 226
Query: 126 WLNNNRRR 133
W N R +
Sbjct: 227 WFQNRRSK 234
>sp|P63008|LHX1_MESAU LIM/homeobox protein Lhx1 OS=Mesocricetus auratus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 66 HDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKV 125
+D ++ K + RT I +Q ++ A KP RH E++ + E G+ ++ +V
Sbjct: 171 NDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ---ETGLNMRVIQV 226
Query: 126 WLNNNRRR 133
W N R +
Sbjct: 227 WFQNRRSK 234
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131
AK RT IT +Q ++ A KP RH E++ E G+ ++ +VW N R
Sbjct: 154 AKRPRTTITAKQLETLKN-AYNNSPKPARHVREQLSS---ETGLDMRVVQVWFQNRR 206
>sp|P29674|LHX1_XENLA LIM/homeobox protein Lhx1 OS=Xenopus laevis GN=lhx1 PE=1 SV=1
Length = 403
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 66 HDHEHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKV 125
+D ++ K + RT I +Q ++ A KP RH E++ + E G+ ++ +V
Sbjct: 170 NDDQNLGAKRRGPRTTIKAKQLETLKA-AFAATPKPTRHIREQLAQ---ETGLNMRVIQV 225
Query: 126 WLNNNRRR 133
W N R +
Sbjct: 226 WFQNRRSK 233
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 29.3 bits (64), Expect = 10.0, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRR 133
K RT IT +Q ++ ++ KP RH E++ E G+ ++ +VW N R +
Sbjct: 411 KRPRTTITAKQLETLKSAYNQ-SPKPARHVREQLSS---ETGLDMRVVQVWFQNRRAK 464
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,628,362
Number of Sequences: 539616
Number of extensions: 2341549
Number of successful extensions: 8479
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 8422
Number of HSP's gapped (non-prelim): 108
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)