Query 044959
Match_columns 159
No_of_seqs 187 out of 333
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh7_A ZF-HD homeobox family p 99.9 4.6E-25 1.6E-29 156.2 8.2 67 70-136 12-78 (80)
2 1wh5_A ZF-HD homeobox family p 99.9 5E-25 1.7E-29 155.3 8.1 68 70-137 12-79 (80)
3 2da4_A Hypothetical protein DK 99.8 1.5E-21 5E-26 135.7 1.1 67 72-138 5-71 (80)
4 2da3_A Alpha-fetoprotein enhan 99.8 1.5E-20 5.2E-25 129.5 3.2 64 71-138 13-76 (80)
5 2dmq_A LIM/homeobox protein LH 99.8 9.9E-21 3.4E-25 131.0 1.8 63 72-138 4-66 (80)
6 2kt0_A Nanog, homeobox protein 99.8 1.3E-19 4.4E-24 126.4 7.4 66 71-140 18-83 (84)
7 2cra_A Homeobox protein HOX-B1 99.8 8.9E-20 3E-24 123.9 6.2 64 71-138 3-66 (70)
8 2dmt_A Homeobox protein BARH-l 99.8 7.8E-20 2.7E-24 127.2 6.0 65 71-139 13-77 (80)
9 2djn_A Homeobox protein DLX-5; 99.8 1.2E-19 4E-24 123.3 5.5 64 71-138 3-66 (70)
10 2da2_A Alpha-fetoprotein enhan 99.8 1.3E-19 4.4E-24 122.6 4.8 64 71-138 3-66 (70)
11 2vi6_A Homeobox protein nanog; 99.8 8E-20 2.8E-24 121.3 3.7 60 74-137 2-61 (62)
12 2dms_A Homeobox protein OTX2; 99.8 1.1E-19 3.9E-24 126.1 4.2 66 72-141 4-69 (80)
13 2dmu_A Homeobox protein goosec 99.8 8.3E-20 2.9E-24 123.8 3.3 65 71-139 3-67 (70)
14 2l7z_A Homeobox protein HOX-A1 99.8 3.1E-19 1.1E-23 122.5 5.4 66 73-142 5-70 (73)
15 2da1_A Alpha-fetoprotein enhan 99.8 1.1E-19 3.8E-24 122.9 3.1 64 72-139 4-67 (70)
16 1wi3_A DNA-binding protein SAT 99.8 1.8E-19 6.3E-24 127.5 4.3 63 71-136 3-65 (71)
17 2hdd_A Protein (engrailed home 99.8 8.5E-20 2.9E-24 120.9 2.2 59 74-136 2-60 (61)
18 1bw5_A ISL-1HD, insulin gene e 99.8 2.5E-19 8.5E-24 120.2 4.3 61 74-138 2-62 (66)
19 2h1k_A IPF-1, pancreatic and d 99.8 1.3E-19 4.3E-24 120.9 1.7 59 74-136 2-60 (63)
20 2e1o_A Homeobox protein PRH; D 99.8 2.1E-19 7.2E-24 122.0 2.7 65 71-139 3-67 (70)
21 1ig7_A Homeotic protein MSX-1; 99.8 1.8E-19 6.3E-24 117.7 2.0 57 76-136 1-57 (58)
22 1ahd_P Antennapedia protein mu 99.7 1.3E-19 4.5E-24 122.9 1.3 62 75-140 2-63 (68)
23 2cue_A Paired box protein PAX6 99.7 2E-19 6.7E-24 125.2 2.2 64 71-138 3-66 (80)
24 1nk2_P Homeobox protein VND; h 99.7 1.4E-19 4.9E-24 125.1 1.4 63 72-138 6-68 (77)
25 3rkq_A Homeobox protein NKX-2. 99.7 4.4E-19 1.5E-23 114.9 2.9 57 75-135 2-58 (58)
26 1jgg_A Segmentation protein EV 99.7 2.8E-19 9.5E-24 118.0 1.9 58 76-137 2-59 (60)
27 3a01_A Homeodomain-containing 99.7 6.6E-19 2.3E-23 126.4 3.7 66 70-139 12-77 (93)
28 2m0c_A Homeobox protein arista 99.7 1.1E-18 3.7E-23 118.7 4.2 62 72-137 6-67 (75)
29 1b8i_A Ultrabithorax, protein 99.7 5.5E-19 1.9E-23 123.6 2.5 64 71-138 16-79 (81)
30 1akh_A Protein (mating-type pr 99.7 8.6E-19 2.9E-23 115.6 3.1 59 73-135 3-61 (61)
31 2dn0_A Zinc fingers and homeob 99.7 2.2E-18 7.6E-23 118.8 5.1 64 74-141 7-70 (76)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 8.9E-19 3E-23 118.6 2.8 60 75-138 2-61 (68)
33 1zq3_P PRD-4, homeotic bicoid 99.7 3.2E-19 1.1E-23 120.7 0.5 60 75-138 2-61 (68)
34 1yz8_P Pituitary homeobox 2; D 99.7 1.9E-19 6.6E-24 121.6 -0.7 62 74-139 2-63 (68)
35 1puf_A HOX-1.7, homeobox prote 99.7 8.2E-19 2.8E-23 121.2 2.4 62 72-137 10-71 (77)
36 1du6_A PBX1, homeobox protein 99.7 2.8E-18 9.4E-23 114.3 4.6 59 74-136 2-63 (64)
37 2hi3_A Homeodomain-only protei 99.7 1E-18 3.5E-23 119.7 2.0 61 75-139 2-63 (73)
38 2r5y_A Homeotic protein sex co 99.7 1.1E-18 3.7E-23 123.3 2.2 62 72-137 25-86 (88)
39 2k40_A Homeobox expressed in E 99.7 1.2E-18 4.2E-23 117.1 2.4 60 75-138 1-60 (67)
40 2ly9_A Zinc fingers and homeob 99.7 5E-18 1.7E-22 115.9 5.4 62 74-139 5-66 (74)
41 1fjl_A Paired protein; DNA-bin 99.7 1.3E-18 4.3E-23 121.1 2.1 61 72-136 15-75 (81)
42 1uhs_A HOP, homeodomain only p 99.7 1.3E-18 4.3E-23 118.7 1.4 60 76-139 2-62 (72)
43 2ecc_A Homeobox and leucine zi 99.7 2.9E-18 9.8E-23 121.7 2.8 62 76-141 4-65 (76)
44 3nar_A ZHX1, zinc fingers and 99.7 4.5E-18 1.6E-22 122.2 3.6 66 69-138 19-84 (96)
45 3a02_A Homeobox protein arista 99.7 3.5E-18 1.2E-22 112.8 2.6 56 78-137 2-57 (60)
46 2da5_A Zinc fingers and homeob 99.7 1E-17 3.6E-22 115.6 4.7 60 76-139 8-67 (75)
47 1b72_A Protein (homeobox prote 99.7 2.4E-18 8.2E-23 123.7 1.1 61 73-137 32-92 (97)
48 1x2n_A Homeobox protein pknox1 99.7 7.9E-18 2.7E-22 114.8 2.9 65 72-137 4-68 (73)
49 2cuf_A FLJ21616 protein; homeo 99.7 3.5E-18 1.2E-22 122.4 1.1 64 72-139 4-82 (95)
50 1puf_B PRE-B-cell leukemia tra 99.7 5.6E-18 1.9E-22 115.6 1.5 62 75-140 1-65 (73)
51 1au7_A Protein PIT-1, GHF-1; c 99.7 1.9E-17 6.6E-22 127.3 4.1 62 72-137 84-145 (146)
52 3d1n_I POU domain, class 6, tr 99.7 2.5E-17 8.6E-22 126.5 4.1 62 72-137 90-151 (151)
53 1e3o_C Octamer-binding transcr 99.7 1.8E-17 6E-22 128.8 3.2 62 72-137 98-159 (160)
54 2dmn_A Homeobox protein TGIF2L 99.7 2.4E-17 8E-22 116.1 3.3 66 71-137 3-68 (83)
55 3a03_A T-cell leukemia homeobo 99.7 9.7E-18 3.3E-22 109.7 1.2 53 80-136 2-54 (56)
56 1mnm_C Protein (MAT alpha-2 tr 99.7 2.9E-17 9.8E-22 115.8 3.5 63 73-136 25-87 (87)
57 2xsd_C POU domain, class 3, tr 99.7 2.4E-17 8.2E-22 129.3 2.8 65 72-140 96-160 (164)
58 1b72_B Protein (PBX1); homeodo 99.7 1.4E-17 4.9E-22 116.7 1.3 60 75-138 1-63 (87)
59 1k61_A Mating-type protein alp 99.7 2.7E-17 9.3E-22 108.2 2.5 58 78-136 1-58 (60)
60 1lfb_A Liver transcription fac 99.6 5.4E-17 1.9E-21 119.1 3.7 63 73-139 7-90 (99)
61 2d5v_A Hepatocyte nuclear fact 99.6 8.8E-17 3E-21 124.3 4.5 64 72-139 94-157 (164)
62 2ecb_A Zinc fingers and homeob 99.6 9.5E-17 3.3E-21 116.2 4.3 53 81-137 17-69 (89)
63 1le8_B Mating-type protein alp 99.6 7.4E-17 2.5E-21 113.2 3.2 63 75-138 2-64 (83)
64 2dmp_A Zinc fingers and homeob 99.6 2.2E-16 7.6E-21 112.6 5.2 57 80-140 18-74 (89)
65 2da6_A Hepatocyte nuclear fact 99.6 2.5E-17 8.5E-22 122.8 -0.2 65 71-139 2-87 (102)
66 2cqx_A LAG1 longevity assuranc 99.6 5.6E-17 1.9E-21 112.1 0.7 61 74-138 7-68 (72)
67 2e19_A Transcription factor 8; 99.6 6.4E-16 2.2E-20 104.8 5.1 59 77-139 5-63 (64)
68 3l1p_A POU domain, class 5, tr 99.6 1.1E-16 3.9E-21 123.9 1.0 60 73-136 94-153 (155)
69 3nau_A Zinc fingers and homeob 99.5 5.7E-16 1.9E-20 107.9 1.0 52 82-137 11-62 (66)
70 2l9r_A Homeobox protein NKX-3. 99.5 2.9E-15 9.8E-20 103.6 4.0 55 81-139 10-64 (69)
71 1x2m_A LAG1 longevity assuranc 99.5 6.9E-15 2.4E-19 101.2 1.2 51 84-137 9-59 (64)
72 1ic8_A Hepatocyte nuclear fact 99.4 1.3E-14 4.5E-19 117.5 1.2 61 72-136 112-193 (194)
73 3k2a_A Homeobox protein MEIS2; 99.4 2.4E-14 8E-19 97.4 1.7 58 80-138 3-60 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 3.2E-13 1.1E-17 112.1 4.6 61 71-135 138-219 (221)
75 2da7_A Zinc finger homeobox pr 99.3 3.8E-13 1.3E-17 95.2 2.4 47 84-134 14-60 (71)
76 1mh3_A Maltose binding-A1 home 99.3 4.8E-13 1.6E-17 110.5 3.0 57 75-135 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.1 2.1E-11 7.2E-16 88.8 1.0 56 80-136 10-65 (89)
78 2nzz_A Penetratin conjugated G 98.1 1.9E-07 6.6E-12 58.4 -1.0 19 121-139 1-19 (37)
79 2elh_A CG11849-PA, LD40883P; s 95.6 0.023 7.9E-07 38.8 5.4 48 73-129 14-61 (87)
80 2glo_A Brinker CG9653-PA; prot 95.3 0.015 5.2E-07 37.0 3.4 47 78-129 2-48 (59)
81 1hlv_A CENP-B, major centromer 94.9 0.013 4.6E-07 41.6 2.5 49 77-132 3-51 (131)
82 2jn6_A Protein CGL2762, transp 93.8 0.061 2.1E-06 36.7 3.8 45 79-131 3-48 (97)
83 1tc3_C Protein (TC3 transposas 93.4 0.11 3.9E-06 29.7 4.0 43 80-131 4-46 (51)
84 2ys9_A Homeobox and leucine zi 93.2 0.06 2E-06 37.8 3.0 39 87-129 18-56 (70)
85 1jko_C HIN recombinase, DNA-in 93.0 0.07 2.4E-06 31.3 2.7 42 81-131 5-46 (52)
86 2rn7_A IS629 ORFA; helix, all 92.6 0.17 5.7E-06 35.0 4.6 50 79-130 4-54 (108)
87 1iuf_A Centromere ABP1 protein 90.5 0.28 9.7E-06 36.3 4.2 52 76-131 6-61 (144)
88 1je8_A Nitrate/nitrite respons 90.4 0.085 2.9E-06 35.6 1.1 51 76-136 16-66 (82)
89 2ofy_A Putative XRE-family tra 90.3 0.13 4.3E-06 33.8 1.8 50 79-131 3-52 (86)
90 3c57_A Two component transcrip 89.2 0.12 4.2E-06 35.7 1.2 50 80-139 26-75 (95)
91 1pdn_C Protein (PRD paired); p 88.2 0.65 2.2E-05 31.5 4.3 41 80-129 16-56 (128)
92 1u78_A TC3 transposase, transp 87.5 0.81 2.8E-05 31.9 4.6 43 80-131 5-47 (141)
93 1k78_A Paired box protein PAX5 86.6 0.82 2.8E-05 32.8 4.3 42 80-130 31-72 (149)
94 1x3u_A Transcriptional regulat 85.7 0.18 6.1E-06 32.6 0.3 46 81-136 16-61 (79)
95 1p4w_A RCSB; solution structur 85.7 0.21 7.3E-06 35.4 0.7 48 79-136 32-79 (99)
96 3kz3_A Repressor protein CI; f 85.3 1.6 5.4E-05 28.2 4.8 46 82-131 2-50 (80)
97 2k27_A Paired box protein PAX- 85.3 1.1 3.6E-05 32.8 4.4 44 80-132 24-67 (159)
98 2rnj_A Response regulator prot 84.6 0.16 5.4E-06 34.5 -0.4 49 78-136 26-74 (91)
99 1fse_A GERE; helix-turn-helix 84.5 0.18 6.1E-06 32.0 -0.1 49 78-136 8-56 (74)
100 2ao9_A Phage protein; structur 83.9 0.63 2.2E-05 36.3 2.8 48 79-129 21-71 (155)
101 3ulq_B Transcriptional regulat 83.2 0.39 1.3E-05 33.3 1.1 50 76-135 24-73 (90)
102 2p7v_B Sigma-70, RNA polymeras 82.9 0.26 9E-06 31.5 0.2 52 81-137 5-56 (68)
103 3hug_A RNA polymerase sigma fa 82.2 0.12 4.1E-06 35.0 -1.7 46 81-136 37-83 (92)
104 3clo_A Transcriptional regulat 81.2 0.54 1.9E-05 37.2 1.5 48 80-137 196-243 (258)
105 3bdn_A Lambda repressor; repre 80.8 0.45 1.5E-05 36.5 0.8 51 80-131 5-55 (236)
106 2r1j_L Repressor protein C2; p 79.2 2.3 8E-05 25.7 3.7 36 88-131 8-43 (68)
107 1lmb_3 Protein (lambda repress 78.4 3.7 0.00013 26.7 4.7 22 109-130 33-54 (92)
108 1u78_A TC3 transposase, transp 78.4 2.5 8.5E-05 29.3 4.0 45 80-132 59-105 (141)
109 3mzy_A RNA polymerase sigma-H 78.0 0.21 7.3E-06 35.0 -1.7 45 81-135 109-153 (164)
110 2o8x_A Probable RNA polymerase 77.9 0.28 9.5E-06 30.7 -1.0 47 81-136 15-61 (70)
111 1zug_A Phage 434 CRO protein; 76.7 2.8 9.7E-05 25.6 3.6 36 89-132 7-42 (71)
112 3bni_A Putative TETR-family tr 76.6 0.4 1.4E-05 35.8 -0.6 27 104-130 61-87 (229)
113 2q0o_A Probable transcriptiona 75.5 0.7 2.4E-05 35.9 0.5 49 78-136 172-220 (236)
114 1r69_A Repressor protein CI; g 75.1 3.6 0.00012 25.0 3.7 24 109-132 17-40 (69)
115 1tty_A Sigma-A, RNA polymerase 74.1 0.66 2.2E-05 31.2 0.0 52 81-137 18-69 (87)
116 1ku3_A Sigma factor SIGA; heli 74.0 1.9 6.6E-05 27.7 2.3 50 81-135 10-59 (73)
117 1adr_A P22 C2 repressor; trans 73.7 3.9 0.00013 25.3 3.7 23 109-131 21-43 (76)
118 3q0w_A HTH-type transcriptiona 72.2 1 3.5E-05 33.6 0.7 28 104-131 62-89 (236)
119 1l3l_A Transcriptional activat 71.2 0.84 2.9E-05 35.4 0.0 49 78-136 170-218 (234)
120 2rgt_A Fusion of LIM/homeobox 71.0 0.038 1.3E-06 41.8 -7.5 25 73-97 134-158 (169)
121 2qko_A Possible transcriptiona 71.0 0.98 3.4E-05 32.9 0.3 39 88-131 35-73 (215)
122 4dyq_A Gene 1 protein; GP1, oc 70.7 0.93 3.2E-05 33.6 0.2 44 78-130 9-53 (140)
123 1y7y_A C.AHDI; helix-turn-heli 70.5 5.3 0.00018 24.5 3.7 22 109-130 29-50 (74)
124 2x48_A CAG38821; archeal virus 70.2 1.8 6.1E-05 26.2 1.4 39 81-128 13-53 (55)
125 3b7h_A Prophage LP1 protein 11 70.1 5.1 0.00017 25.0 3.6 36 88-131 10-45 (78)
126 3fmy_A HTH-type transcriptiona 69.7 4 0.00014 26.2 3.1 41 80-131 9-49 (73)
127 1s7o_A Hypothetical UPF0122 pr 69.6 0.78 2.7E-05 33.1 -0.5 47 80-136 21-68 (113)
128 1j9i_A GPNU1 DBD;, terminase s 68.6 2 7E-05 27.7 1.5 23 109-131 5-27 (68)
129 2xi8_A Putative transcription 68.2 2.4 8.4E-05 25.5 1.7 23 109-131 17-39 (66)
130 2jpc_A SSRB; DNA binding prote 67.8 0.51 1.7E-05 29.1 -1.6 29 108-136 15-43 (61)
131 2k9q_A Uncharacterized protein 67.8 6.1 0.00021 25.0 3.7 22 109-130 18-39 (77)
132 3g1o_A Transcriptional regulat 67.6 1.3 4.6E-05 33.3 0.5 28 104-131 61-88 (255)
133 2ef8_A C.ECOT38IS, putative tr 66.0 7.2 0.00025 24.6 3.7 23 109-131 26-48 (84)
134 3i5g_B Myosin regulatory light 65.9 16 0.00055 26.2 6.0 52 77-128 5-59 (153)
135 2a6c_A Helix-turn-helix motif; 65.3 5.9 0.0002 25.8 3.3 36 88-131 21-56 (83)
136 1l0o_C Sigma factor; bergerat 65.1 1.3 4.5E-05 32.8 0.0 32 104-135 212-243 (243)
137 2kpj_A SOS-response transcript 64.4 5.5 0.00019 26.4 3.0 22 109-130 25-46 (94)
138 2ict_A Antitoxin HIGA; helix-t 64.2 6.8 0.00023 25.8 3.5 23 109-131 24-46 (94)
139 3bs3_A Putative DNA-binding pr 64.0 3.1 0.00011 25.9 1.6 23 109-131 26-48 (76)
140 3c3w_A Two component transcrip 63.9 2.4 8.2E-05 31.8 1.2 47 80-136 148-194 (225)
141 3klo_A Transcriptional regulat 63.1 3.9 0.00013 30.4 2.3 47 80-136 158-204 (225)
142 3qp6_A CVIR transcriptional re 62.6 2.6 8.9E-05 33.9 1.3 48 79-136 195-242 (265)
143 2lv7_A Calcium-binding protein 62.5 16 0.00056 24.8 5.3 54 75-128 23-79 (100)
144 2iai_A Putative transcriptiona 62.5 2.5 8.5E-05 31.3 1.1 40 87-131 36-75 (230)
145 3cwr_A Transcriptional regulat 61.9 1.5 5.2E-05 30.9 -0.2 27 104-130 35-61 (208)
146 1xsv_A Hypothetical UPF0122 pr 61.5 1.1 3.6E-05 32.2 -1.1 47 81-136 25-71 (113)
147 1qgp_A Protein (double strande 61.5 2.5 8.7E-05 28.5 0.9 45 81-129 10-54 (77)
148 3o9x_A Uncharacterized HTH-typ 60.8 5.6 0.00019 28.0 2.7 41 80-131 69-109 (133)
149 2q24_A Putative TETR family tr 60.8 5.7 0.0002 28.2 2.7 39 87-131 21-59 (194)
150 3gzi_A Transcriptional regulat 60.0 2.7 9.4E-05 30.1 0.9 28 104-131 35-62 (218)
151 3bd1_A CRO protein; transcript 59.9 3.4 0.00012 26.6 1.3 24 108-131 13-36 (79)
152 3fia_A Intersectin-1; EH 1 dom 59.8 8.4 0.00029 28.5 3.6 47 80-126 25-72 (121)
153 3omt_A Uncharacterized protein 59.7 4.4 0.00015 25.4 1.8 22 109-130 24-45 (73)
154 3dcf_A Transcriptional regulat 59.5 3.3 0.00011 29.5 1.2 39 88-131 38-76 (218)
155 3szt_A QCSR, quorum-sensing co 59.4 3.1 0.00011 32.5 1.2 48 79-136 173-220 (237)
156 2k27_A Paired box protein PAX- 59.4 24 0.00084 25.3 6.0 53 79-135 81-140 (159)
157 3he0_A Transcriptional regulat 58.8 3.4 0.00011 29.0 1.2 41 86-131 16-56 (196)
158 1or7_A Sigma-24, RNA polymeras 58.4 0.93 3.2E-05 33.0 -1.9 29 108-136 158-186 (194)
159 2b5a_A C.BCLI; helix-turn-heli 58.4 4.5 0.00015 25.2 1.6 23 109-131 26-48 (77)
160 3nxc_A HTH-type protein SLMA; 58.3 4.4 0.00015 28.8 1.7 28 104-131 43-70 (212)
161 2hxo_A Putative TETR-family tr 57.7 8.9 0.0003 29.4 3.5 53 74-131 8-61 (237)
162 2hku_A A putative transcriptio 57.7 4.5 0.00015 29.3 1.7 28 103-131 37-64 (215)
163 2pmy_A RAS and EF-hand domain- 57.3 8.5 0.00029 25.0 2.9 53 76-128 15-68 (91)
164 3g7r_A Putative transcriptiona 57.3 7.8 0.00027 28.4 3.0 28 104-131 53-80 (221)
165 3ej9_B Beta-subunit of trans-3 56.7 10 0.00034 26.5 3.3 34 83-130 12-45 (70)
166 1a04_A Nitrate/nitrite respons 56.6 2.8 9.4E-05 30.7 0.4 47 80-136 153-199 (215)
167 2np3_A Putative TETR-family re 56.2 3.1 0.00011 30.1 0.6 29 103-131 47-75 (212)
168 3lsg_A Two-component response 55.9 6.3 0.00022 26.4 2.2 39 86-129 3-42 (103)
169 2l49_A C protein; P2 bacteriop 55.6 14 0.00047 24.2 3.8 22 109-130 20-41 (99)
170 2fq4_A Transcriptional regulat 55.5 4.1 0.00014 29.1 1.2 27 104-130 30-56 (192)
171 2wiu_B HTH-type transcriptiona 55.5 12 0.0004 23.9 3.4 22 109-130 28-49 (88)
172 2qib_A TETR-family transcripti 55.3 3.1 0.00011 30.9 0.5 28 104-131 31-58 (231)
173 1irz_A ARR10-B; helix-turn-hel 54.8 6.8 0.00023 26.6 2.1 61 74-136 2-62 (64)
174 3kz9_A SMCR; transcriptional r 53.8 3.8 0.00013 28.7 0.8 27 104-130 35-61 (206)
175 2hin_A GP39, repressor protein 53.6 4.6 0.00016 27.3 1.1 21 109-129 13-33 (71)
176 3m20_A 4-oxalocrotonate tautom 53.6 13 0.00045 23.3 3.3 35 82-130 10-44 (62)
177 1k78_A Paired box protein PAX5 53.4 35 0.0012 24.0 5.9 48 78-132 87-144 (149)
178 1umq_A Photosynthetic apparatu 53.0 24 0.00081 24.3 4.8 37 84-128 40-76 (81)
179 2rae_A Transcriptional regulat 52.0 6.6 0.00023 27.9 1.8 42 88-134 24-65 (207)
180 3nrg_A TETR family transcripti 51.9 3.9 0.00013 29.2 0.6 44 83-131 11-58 (217)
181 3lwj_A Putative TETR-family tr 51.8 4.4 0.00015 28.6 0.9 36 90-130 21-56 (202)
182 3f1b_A TETR-like transcription 51.1 3.5 0.00012 29.0 0.2 36 91-131 24-59 (203)
183 2v57_A TETR family transcripti 50.8 9.6 0.00033 26.6 2.5 27 105-131 31-57 (190)
184 1rp3_A RNA polymerase sigma fa 50.7 1.6 5.5E-05 32.5 -1.7 45 82-135 188-232 (239)
185 2oer_A Probable transcriptiona 50.7 4.7 0.00016 29.4 0.9 46 85-131 24-69 (214)
186 1fi6_A EH domain protein REPS1 50.5 12 0.0004 24.7 2.8 48 81-128 2-50 (92)
187 3mb2_B 4-oxalocrotonate tautom 49.8 14 0.00049 25.8 3.2 33 83-129 14-46 (72)
188 3s8q_A R-M controller protein; 49.8 7.8 0.00027 24.6 1.7 23 109-131 27-49 (82)
189 2np5_A Transcriptional regulat 49.7 5.7 0.00019 28.7 1.2 50 77-131 4-54 (203)
190 3bru_A Regulatory protein, TET 49.7 7.8 0.00027 27.7 1.9 38 89-131 38-75 (222)
191 3on2_A Probable transcriptiona 49.6 5.4 0.00019 27.8 1.0 39 88-131 19-57 (199)
192 3him_A Probable transcriptiona 49.6 5.9 0.0002 27.8 1.2 40 87-131 22-61 (211)
193 3m21_A Probable tautomerase HP 49.5 19 0.00065 22.7 3.6 36 81-130 13-48 (67)
194 1pdn_C Protein (PRD paired); p 49.4 11 0.00036 25.2 2.4 47 79-129 73-126 (128)
195 1c07_A Protein (epidermal grow 49.3 12 0.00042 24.8 2.8 47 82-128 4-51 (95)
196 2iu5_A DHAS, YCEG, HTH-type dh 49.3 9.2 0.00031 27.2 2.2 40 87-131 19-58 (195)
197 3mvp_A TETR/ACRR transcription 49.3 7.3 0.00025 27.6 1.7 27 104-130 44-70 (217)
198 3f6w_A XRE-family like protein 49.3 7.9 0.00027 24.6 1.7 23 109-131 30-52 (83)
199 1fex_A TRF2-interacting telome 48.7 34 0.0012 22.1 4.8 47 79-126 2-49 (59)
200 1g3n_C V-cyclin; cyclin-depend 48.7 40 0.0014 26.6 6.1 42 81-122 125-168 (257)
201 3aqt_A Bacterial regulatory pr 48.4 4.1 0.00014 30.6 0.2 28 104-131 64-91 (245)
202 2ewt_A BLDD, putative DNA-bind 47.8 21 0.00073 21.6 3.5 22 109-130 24-47 (71)
203 2eo2_A Adult MALE hypothalamus 47.5 64 0.0022 22.4 6.2 43 76-123 23-68 (71)
204 1yio_A Response regulatory pro 47.2 5.2 0.00018 28.9 0.6 46 81-136 142-187 (208)
205 1ity_A TRF1; helix-turn-helix, 47.0 23 0.0008 22.9 3.8 39 73-118 4-42 (69)
206 2zcx_A SCO7815, TETR-family tr 47.0 5.3 0.00018 30.1 0.6 37 90-131 32-68 (231)
207 3vk0_A NHTF, transcriptional r 46.9 15 0.00051 25.2 3.0 22 109-130 37-58 (114)
208 3ppb_A Putative TETR family tr 46.8 9.1 0.00031 26.5 1.8 40 87-131 15-54 (195)
209 2ktg_A Calmodulin, putative; e 46.8 35 0.0012 21.0 4.5 51 78-128 4-57 (85)
210 2jml_A DNA binding domain/tran 46.5 6.4 0.00022 26.1 0.9 21 108-128 7-27 (81)
211 3fiw_A Putative TETR-family tr 46.4 8.2 0.00028 29.0 1.7 53 74-131 17-70 (211)
212 3qq6_A HTH-type transcriptiona 46.4 9.4 0.00032 24.6 1.7 21 109-129 26-46 (78)
213 3mkl_A HTH-type transcriptiona 46.2 5.2 0.00018 27.8 0.5 41 84-129 6-46 (120)
214 2guh_A Putative TETR-family tr 45.9 4.8 0.00016 29.9 0.3 38 89-131 47-84 (214)
215 2opo_A Polcalcin CHE A 3; calc 45.8 27 0.00091 21.7 3.8 49 80-128 3-53 (86)
216 2g7l_A TETR-family transcripti 45.3 9.5 0.00032 29.5 1.9 52 75-131 12-64 (243)
217 3e7l_A Transcriptional regulat 45.2 24 0.00081 22.3 3.5 21 109-129 35-55 (63)
218 1gyx_A YDCE, B1461, hypothetic 45.2 21 0.00072 23.2 3.4 36 81-130 11-46 (76)
219 3qqa_A CMER; alpha-helical, he 45.2 3.2 0.00011 29.6 -0.8 29 103-131 36-64 (216)
220 3kkc_A TETR family transcripti 44.9 6.5 0.00022 27.2 0.8 45 86-131 13-57 (177)
221 3rd3_A Probable transcriptiona 44.8 6.3 0.00022 27.5 0.7 39 88-131 17-55 (197)
222 2jpf_A Hypothetical protein; a 44.7 4.5 0.00015 30.4 -0.1 9 122-130 53-61 (127)
223 2w96_A G1/S-specific cyclin-D1 44.4 41 0.0014 26.7 5.6 43 80-122 130-174 (271)
224 3oio_A Transcriptional regulat 44.0 9.9 0.00034 26.0 1.6 40 85-129 7-46 (113)
225 2dg7_A Putative transcriptiona 43.9 11 0.00037 26.7 1.9 44 87-135 13-56 (195)
226 1p2f_A Response regulator; DRR 43.7 7 0.00024 28.6 0.9 51 80-136 144-197 (220)
227 1x57_A Endothelial differentia 43.4 10 0.00035 24.7 1.5 23 109-131 29-51 (91)
228 2g7g_A RHA04620, putative tran 43.3 10 0.00035 28.3 1.8 46 79-131 8-54 (213)
229 1dtl_A Cardiac troponin C; hel 42.8 40 0.0014 22.7 4.7 53 76-128 6-62 (161)
230 2q1z_A RPOE, ECF SIGE; ECF sig 42.7 0.58 2E-05 33.9 -5.2 26 110-135 155-180 (184)
231 3ccy_A Putative TETR-family tr 42.3 17 0.00058 25.9 2.7 37 89-130 22-58 (203)
232 3t76_A VANU, transcriptional r 42.2 11 0.00037 25.7 1.6 23 108-130 39-61 (88)
233 3mn2_A Probable ARAC family tr 42.0 12 0.00042 25.2 1.8 39 86-129 3-41 (108)
234 3qkx_A Uncharacterized HTH-typ 41.9 12 0.0004 25.9 1.7 29 103-131 25-53 (188)
235 2i10_A Putative TETR transcrip 41.7 16 0.00054 26.4 2.5 40 87-131 17-56 (202)
236 1t8t_A Heparan sulfate D-gluco 41.6 47 0.0016 25.5 5.4 34 75-119 233-266 (271)
237 2oi8_A Putative regulatory pro 41.3 6.6 0.00023 29.2 0.4 28 104-131 34-61 (216)
238 2gwr_A DNA-binding response re 41.2 7.8 0.00027 29.0 0.8 51 80-136 152-207 (238)
239 2lhi_A Calmodulin, serine/thre 40.8 22 0.00077 25.9 3.3 42 79-120 2-44 (176)
240 2hxi_A Putative transcriptiona 40.7 11 0.00037 29.0 1.6 51 76-131 23-74 (241)
241 2qwt_A Transcriptional regulat 40.6 14 0.00048 26.4 2.1 35 91-131 23-57 (196)
242 3abf_A 4-oxalocrotonate tautom 40.5 29 0.00098 21.1 3.3 35 82-130 12-46 (64)
243 3qrx_A Centrin; calcium-bindin 40.5 41 0.0014 23.0 4.4 53 75-127 15-70 (169)
244 1qbj_A Protein (double-strande 40.1 11 0.00039 25.7 1.5 43 83-129 8-50 (81)
245 2ppx_A AGR_C_3184P, uncharacte 40.1 13 0.00045 24.9 1.8 23 109-131 46-68 (99)
246 1rzs_A Antirepressor, regulato 40.1 11 0.00037 23.8 1.2 20 108-127 12-31 (61)
247 2jrt_A Uncharacterized protein 40.0 13 0.00045 26.3 1.8 44 78-129 29-72 (95)
248 4fcy_A Transposase; rnaseh, DD 39.9 29 0.001 29.7 4.3 44 81-128 22-74 (529)
249 1sgm_A Putative HTH-type trans 39.9 13 0.00044 25.7 1.7 38 87-129 12-49 (191)
250 3t72_q RNA polymerase sigma fa 39.8 6.8 0.00023 27.7 0.2 51 81-136 19-69 (99)
251 1bl0_A Protein (multiple antib 39.8 9.9 0.00034 26.7 1.1 43 82-129 8-50 (129)
252 3op9_A PLI0006 protein; struct 39.7 12 0.00042 25.4 1.6 23 109-131 25-47 (114)
253 3qbm_A TETR transcriptional re 39.7 9.7 0.00033 26.5 1.1 39 88-131 14-52 (199)
254 1p2x_A RNG2 protein, RAS GTPas 39.4 27 0.00092 26.5 3.6 24 80-103 132-155 (159)
255 3jsj_A Putative TETR-family tr 39.4 14 0.00049 25.8 1.9 40 86-131 14-53 (190)
256 2lfw_A PHYR sigma-like domain; 39.3 1.7 5.8E-05 31.6 -3.1 49 81-138 93-141 (157)
257 1ys7_A Transcriptional regulat 39.3 6.8 0.00023 28.8 0.2 51 80-136 158-213 (233)
258 1r8d_A Transcription activator 39.2 11 0.00038 26.3 1.3 20 109-128 5-24 (109)
259 1kgs_A DRRD, DNA binding respo 39.2 5.4 0.00018 29.2 -0.4 51 80-136 150-205 (225)
260 3lsj_A DEST; transcriptional r 39.1 14 0.00049 26.5 1.9 46 85-131 11-57 (220)
261 2yve_A Transcriptional regulat 39.1 13 0.00046 26.4 1.8 39 87-130 10-48 (185)
262 1pb6_A Hypothetical transcript 38.8 5 0.00017 28.5 -0.6 28 104-131 36-63 (212)
263 2zb9_A Putative transcriptiona 38.8 5.8 0.0002 28.5 -0.3 27 104-130 41-67 (214)
264 1j7q_A CAVP, calcium vector pr 38.6 50 0.0017 20.4 4.3 51 78-128 4-60 (86)
265 3oou_A LIN2118 protein; protei 38.5 12 0.00043 25.2 1.4 39 86-129 6-44 (108)
266 2pij_A Prophage PFL 6 CRO; tra 38.5 13 0.00045 22.8 1.4 23 108-130 15-37 (67)
267 2f2c_A Cyclin homolog, V-cycli 38.4 40 0.0014 26.5 4.6 43 80-122 125-169 (254)
268 2id3_A Putative transcriptiona 38.4 3.9 0.00013 30.2 -1.3 28 104-131 58-85 (225)
269 1eh2_A EPS15; calcium binding, 38.1 42 0.0015 23.2 4.2 48 81-128 8-55 (106)
270 1b0n_A Protein (SINR protein); 37.4 15 0.00053 24.3 1.8 21 109-129 17-37 (111)
271 1ntc_A Protein (nitrogen regul 37.4 33 0.0011 23.2 3.5 35 86-128 52-86 (91)
272 1hlv_A CENP-B, major centromer 37.3 70 0.0024 21.9 5.3 56 74-129 65-125 (131)
273 3lfp_A CSP231I C protein; tran 37.3 25 0.00087 23.2 2.8 18 104-121 45-62 (98)
274 3dew_A Transcriptional regulat 37.1 8.4 0.00029 26.8 0.4 39 88-131 15-53 (206)
275 3fwb_A Cell division control p 37.1 92 0.0031 20.8 6.0 53 75-127 10-65 (161)
276 2qtq_A Transcriptional regulat 36.9 12 0.00041 26.3 1.2 39 88-131 23-61 (213)
277 3ox6_A Calcium-binding protein 36.8 84 0.0029 20.6 5.4 40 80-119 3-43 (153)
278 2kvr_A Ubiquitin carboxyl-term 36.7 22 0.00075 26.4 2.6 27 106-132 69-95 (130)
279 2pz9_A Putative regulatory pro 36.7 10 0.00035 27.9 0.8 48 79-131 27-75 (226)
280 2vz4_A Tipal, HTH-type transcr 36.5 13 0.00045 25.9 1.3 21 109-129 4-24 (108)
281 2eby_A Putative HTH-type trans 36.4 15 0.00051 24.9 1.6 23 109-131 27-49 (113)
282 2jnf_A Troponin C; stretch act 36.4 44 0.0015 22.5 4.0 48 80-127 5-56 (158)
283 3bd9_A Heparan sulfate glucosa 36.3 51 0.0017 25.8 4.9 34 75-119 243-276 (280)
284 2k9s_A Arabinose operon regula 36.2 18 0.0006 24.4 1.9 39 86-129 4-43 (107)
285 3bqz_B HTH-type transcriptiona 36.1 13 0.00043 25.9 1.2 39 87-130 8-46 (194)
286 3cec_A Putative antidote prote 36.1 16 0.00056 24.4 1.7 23 109-131 34-56 (104)
287 3lhq_A Acrab operon repressor 36.0 12 0.00041 26.3 1.1 28 104-131 32-59 (220)
288 2o7t_A Transcriptional regulat 35.8 13 0.00045 26.4 1.2 28 104-131 26-53 (199)
289 3o39_A Periplasmic protein rel 35.6 23 0.00079 25.8 2.6 17 80-96 89-105 (108)
290 1w98_B Cyclin E, G1/S-specific 35.6 82 0.0028 25.3 6.1 41 81-121 125-167 (283)
291 3knw_A Putative transcriptiona 35.5 12 0.00042 26.4 1.1 28 104-131 32-59 (212)
292 1otf_A 4-oxalocrotonate tautom 35.4 38 0.0013 20.3 3.2 34 83-130 12-45 (62)
293 2cch_B Cyclin A2, cyclin-A; co 35.3 52 0.0018 25.9 4.8 40 81-120 113-154 (260)
294 2jvl_A TRMBF1; coactivator, he 35.2 17 0.00056 25.1 1.6 23 109-131 52-74 (107)
295 1avs_A Troponin C; muscle cont 35.0 74 0.0025 19.9 4.7 53 76-128 8-63 (90)
296 1t33_A Putative transcriptiona 34.9 13 0.00046 26.6 1.2 25 107-131 32-56 (224)
297 1neq_A DNA-binding protein NER 34.8 15 0.00053 24.3 1.4 21 108-128 24-44 (74)
298 2pjp_A Selenocysteine-specific 34.8 14 0.00048 26.2 1.2 42 82-128 1-42 (121)
299 2b9r_A Human cyclin B1; cell c 34.5 59 0.002 25.9 5.0 43 81-123 112-156 (269)
300 3g5g_A Regulatory protein; tra 34.3 18 0.00062 24.6 1.8 23 109-131 44-66 (99)
301 2rek_A Putative TETR-family tr 34.3 13 0.00045 26.3 1.0 36 90-131 25-60 (199)
302 1g2h_A Transcriptional regulat 34.1 51 0.0018 20.7 3.8 39 81-128 17-55 (61)
303 3b81_A Transcriptional regulat 34.0 14 0.00046 26.0 1.1 28 104-131 29-56 (203)
304 1f5q_B Gamma herpesvirus cycli 33.9 85 0.0029 25.1 5.9 43 80-122 122-166 (252)
305 3ivp_A Putative transposon-rel 33.7 18 0.0006 25.1 1.6 23 109-131 28-50 (126)
306 1nst_A NST1, heparan sulfate N 33.6 30 0.001 27.9 3.2 44 75-129 276-319 (325)
307 2opt_A Actii protein; helical 33.6 18 0.00062 27.9 1.8 48 79-131 3-51 (234)
308 3mb2_A 4-oxalocrotonate tautom 33.5 41 0.0014 21.5 3.3 35 82-130 12-46 (72)
309 3f0c_A TETR-molecule A, transc 33.5 12 0.00039 26.7 0.6 39 88-131 18-56 (216)
310 3vp5_A Transcriptional regulat 33.4 19 0.00064 25.8 1.8 27 104-130 30-56 (189)
311 3mlf_A Transcriptional regulat 33.4 17 0.0006 25.2 1.5 23 109-131 39-61 (111)
312 2dg8_A Putative TETR-family tr 33.2 13 0.00043 26.5 0.8 40 87-131 15-54 (193)
313 2ba3_A NIKA; dimer, bacterial 33.1 22 0.00074 21.7 1.8 23 76-98 16-38 (51)
314 2llk_A Cyclin-D-binding MYB-li 33.0 68 0.0023 21.7 4.5 45 76-128 20-64 (73)
315 2opa_A Probable tautomerase YW 32.8 45 0.0015 19.9 3.3 34 83-130 12-45 (61)
316 2g7s_A Transcriptional regulat 32.7 12 0.00041 25.8 0.6 28 104-131 26-53 (194)
317 2ovk_B RLC, myosin regulatory 32.6 59 0.002 21.9 4.2 42 77-118 5-47 (153)
318 3col_A Putative transcription 32.4 12 0.0004 25.9 0.5 39 88-131 17-55 (196)
319 1zk8_A Transcriptional regulat 32.4 12 0.0004 26.1 0.5 40 87-131 14-53 (183)
320 3j04_B Myosin regulatory light 32.2 82 0.0028 20.7 4.8 48 82-129 1-51 (143)
321 2xdn_A HTH-type transcriptiona 32.0 19 0.00066 25.7 1.6 28 104-131 29-56 (210)
322 3egq_A TETR family transcripti 32.0 13 0.00044 25.6 0.6 28 104-131 22-49 (170)
323 3f52_A CLP gene regulator (CLG 31.9 20 0.00067 24.4 1.6 23 109-131 44-66 (117)
324 4aci_A HTH-type transcriptiona 31.7 7 0.00024 27.4 -0.8 27 104-130 32-58 (191)
325 3eus_A DNA-binding protein; st 31.4 23 0.00077 23.1 1.8 23 109-131 30-52 (86)
326 3vpr_A Transcriptional regulat 31.4 16 0.00056 25.7 1.1 41 87-132 9-49 (190)
327 2zcm_A Biofilm operon icaabcd 31.3 17 0.00058 25.6 1.2 42 85-131 11-52 (192)
328 2cqq_A RSGI RUH-037, DNAJ homo 31.3 88 0.003 20.9 4.8 43 78-124 7-49 (72)
329 3trb_A Virulence-associated pr 31.2 21 0.00073 24.8 1.7 23 109-131 30-52 (104)
330 3s5r_A Transcriptional regulat 31.2 13 0.00044 26.3 0.5 40 87-131 16-55 (216)
331 2fjr_A Repressor protein CI; g 31.1 19 0.00065 26.4 1.5 24 108-131 22-45 (189)
332 3ej9_A Alpha-subunit of trans- 30.9 48 0.0017 21.6 3.4 34 82-129 12-45 (76)
333 1uxc_A FRUR (1-57), fructose r 30.8 20 0.00069 23.3 1.4 23 109-131 3-25 (65)
334 3pas_A TETR family transcripti 30.7 8.1 0.00028 26.8 -0.6 28 104-131 26-53 (195)
335 2bnm_A Epoxidase; oxidoreducta 30.3 48 0.0016 24.3 3.6 21 103-123 50-70 (198)
336 3i5g_C Myosin catalytic light 30.0 37 0.0013 24.4 2.9 46 80-125 1-51 (159)
337 3frq_A Repressor protein MPHR( 29.9 11 0.00036 26.7 -0.1 28 104-131 26-53 (195)
338 3ry0_A Putative tautomerase; o 29.7 55 0.0019 20.2 3.4 34 82-129 11-44 (65)
339 3anp_C Transcriptional repress 29.7 20 0.00068 25.5 1.3 38 89-131 17-54 (204)
340 1q06_A Transcriptional regulat 29.6 20 0.00067 26.2 1.3 21 109-129 3-23 (135)
341 3u0k_A Rcamp; fluorescent prot 29.5 81 0.0028 28.3 5.5 43 77-119 291-334 (440)
342 1c9b_A General transcription f 29.4 1.1E+02 0.0039 22.8 5.7 42 82-123 77-120 (207)
343 1oyi_A Double-stranded RNA-bin 29.2 19 0.00065 25.2 1.1 36 84-127 16-51 (82)
344 3npi_A TETR family regulatory 29.0 11 0.00038 28.1 -0.1 50 77-131 13-63 (251)
345 3uj3_X DNA-invertase; helix-tu 29.0 12 0.0004 28.2 0.0 44 81-133 142-185 (193)
346 3on4_A Transcriptional regulat 29.0 15 0.00051 25.4 0.6 40 87-131 16-55 (191)
347 2mys_C Myosin; muscle protein, 29.0 1.2E+02 0.0042 19.7 5.4 47 81-127 1-50 (149)
348 1wdc_B Scallop myosin; calcium 28.8 1.3E+02 0.0044 20.2 5.4 50 80-129 10-62 (156)
349 2y2z_A SIM16, SIMR, putative r 28.8 25 0.00086 27.7 1.9 46 81-131 26-72 (267)
350 2mys_B Myosin; muscle protein, 28.8 1E+02 0.0035 20.9 5.0 50 80-129 17-70 (166)
351 3hh0_A Transcriptional regulat 28.6 21 0.00071 26.6 1.3 35 108-144 6-41 (146)
352 3mf7_A CIS-3-chloroacrylic aci 28.6 40 0.0014 25.3 3.0 37 80-130 10-46 (149)
353 3ljl_A Transcriptional regulat 28.3 15 0.00051 25.6 0.5 28 104-131 32-59 (156)
354 2d9a_A B-MYB, MYB-related prot 28.2 76 0.0026 19.7 3.8 24 75-98 4-27 (60)
355 3gp4_A Transcriptional regulat 28.2 21 0.00071 26.4 1.3 34 109-144 5-39 (142)
356 2o38_A Hypothetical protein; a 28.1 57 0.002 23.1 3.6 22 109-130 56-77 (120)
357 2fd5_A Transcriptional regulat 28.1 29 0.00098 24.0 1.9 39 88-131 14-52 (180)
358 2k9i_A Plasmid PRN1, complete 28.0 52 0.0018 19.5 2.9 24 75-98 9-32 (55)
359 2d1h_A ST1889, 109AA long hypo 27.8 15 0.0005 23.8 0.3 41 80-127 17-57 (109)
360 3c2b_A Transcriptional regulat 27.7 17 0.00057 26.0 0.6 39 88-131 22-60 (221)
361 1faq_A RAF-1; transferase, ser 27.7 25 0.00087 21.2 1.4 28 17-51 16-45 (52)
362 1zp2_A RNA polymerase II holoe 27.7 98 0.0034 23.8 5.2 44 81-124 108-153 (235)
363 2pag_A Hypothetical protein; n 27.6 56 0.0019 23.9 3.5 36 85-120 3-38 (135)
364 2ras_A Transcriptional regulat 27.5 17 0.00059 25.8 0.7 28 104-131 29-56 (212)
365 2gen_A Probable transcriptiona 27.4 24 0.00082 25.2 1.4 39 88-131 14-52 (197)
366 2l8n_A Transcriptional repress 27.3 28 0.00097 22.7 1.7 24 108-131 11-34 (67)
367 2cho_A Glucosaminidase, hexosa 27.2 52 0.0018 30.8 4.0 43 77-119 136-201 (716)
368 3gpv_A Transcriptional regulat 27.0 23 0.00079 26.2 1.3 22 108-129 18-39 (148)
369 4hku_A LMO2814 protein, TETR t 27.0 27 0.00091 24.7 1.6 45 82-131 7-52 (178)
370 1wdc_C Scallop myosin; calcium 27.0 33 0.0011 23.2 2.1 41 80-120 1-44 (156)
371 2hyt_A TETR-family transcripti 26.9 28 0.00096 24.7 1.7 39 88-131 19-57 (197)
372 3cdl_A Transcriptional regulat 26.9 23 0.0008 25.3 1.3 28 104-131 27-54 (203)
373 2oqr_A Sensory transduction pr 26.8 12 0.00043 27.3 -0.2 51 80-136 155-210 (230)
374 1uiz_A MIF, macrophage migrati 26.6 57 0.0019 22.4 3.2 35 82-130 68-102 (115)
375 3g33_B CCND3 protein; Ser/Thr 26.6 78 0.0027 25.9 4.6 43 80-122 144-188 (306)
376 3uan_A Heparan sulfate glucosa 26.5 1.1E+02 0.0037 24.6 5.4 35 74-119 231-265 (269)
377 3c07_A Putative TETR-family tr 26.4 27 0.00093 27.0 1.7 38 89-131 49-86 (273)
378 1y66_A Engrailed homeodomain; 26.4 9.2 0.00032 24.9 -0.8 43 82-128 4-46 (52)
379 3hot_A Transposable element ma 26.3 73 0.0025 25.2 4.2 45 83-131 7-54 (345)
380 2f07_A YVDT; helix-turn-helix, 26.3 25 0.00085 25.1 1.4 41 87-132 16-56 (197)
381 3loc_A HTH-type transcriptiona 26.2 4.3 0.00015 28.7 -2.7 27 104-130 36-62 (212)
382 2of7_A Putative TETR-family tr 26.1 21 0.00073 26.9 1.0 31 104-134 66-96 (260)
383 2ibd_A Possible transcriptiona 26.0 22 0.00075 25.4 1.0 28 104-131 32-59 (204)
384 1vi0_A Transcriptional regulat 26.0 18 0.0006 26.2 0.5 40 87-131 14-53 (206)
385 1k81_A EIF-2-beta, probable tr 26.0 14 0.00049 22.0 -0.0 14 33-46 19-32 (36)
386 3vib_A MTRR; helix-turn-helix 25.9 22 0.00076 25.4 1.0 28 104-131 28-55 (210)
387 1hfo_A Migration inhibitory fa 25.9 60 0.002 22.1 3.2 35 82-130 67-101 (113)
388 3rh2_A Hypothetical TETR-like 25.7 18 0.00063 25.8 0.6 40 87-131 9-48 (212)
389 3oi8_A Uncharacterized protein 25.6 96 0.0033 21.6 4.4 45 81-129 2-46 (156)
390 1nee_A EIF-2-beta, probable tr 25.5 19 0.00064 27.5 0.6 16 32-47 120-135 (138)
391 3e7q_A Transcriptional regulat 25.5 12 0.0004 26.4 -0.5 28 104-131 32-59 (215)
392 3rqi_A Response regulator prot 25.2 60 0.002 23.1 3.3 44 80-131 138-181 (184)
393 3bjb_A Probable transcriptiona 25.1 25 0.00087 25.4 1.2 28 104-131 40-67 (207)
394 2aje_A Telomere repeat-binding 25.1 65 0.0022 23.3 3.4 26 73-98 7-32 (105)
395 2os5_A Acemif; macrophage migr 25.0 64 0.0022 22.3 3.3 36 82-131 68-103 (119)
396 1v74_A Colicin D; colicin D - 24.9 79 0.0027 23.5 3.9 46 78-123 6-55 (107)
397 1z4h_A TORI, TOR inhibition pr 24.7 25 0.00085 22.4 1.0 23 108-130 12-34 (66)
398 3sjm_A Telomeric repeat-bindin 24.7 64 0.0022 20.9 3.0 37 75-118 7-43 (64)
399 2ovk_C Myosin catalytic light 24.6 62 0.0021 21.9 3.1 49 80-128 1-54 (159)
400 3itf_A Periplasmic adaptor pro 24.3 45 0.0015 25.3 2.6 20 77-96 114-133 (145)
401 2zhg_A Redox-sensitive transcr 24.2 27 0.00093 26.1 1.3 34 108-143 13-46 (154)
402 3mnl_A KSTR, transcriptional r 24.2 13 0.00044 26.1 -0.5 28 104-131 38-65 (203)
403 2d6y_A Putative TETR family re 24.2 24 0.00082 25.4 0.9 40 87-131 14-53 (202)
404 1g8i_A Frequenin, neuronal cal 24.2 81 0.0028 21.9 3.8 48 79-128 19-70 (190)
405 2fnf_X Putative RAS effector N 23.9 35 0.0012 22.7 1.7 30 16-51 36-67 (72)
406 2joj_A Centrin protein; N-term 23.9 1.2E+02 0.0041 17.9 4.6 47 82-128 1-50 (77)
407 1x58_A Hypothetical protein 49 23.7 97 0.0033 20.8 3.8 24 75-98 4-27 (62)
408 2dgz_A Werner syndrome protein 23.4 1.8E+02 0.0062 20.9 5.6 38 78-123 9-46 (113)
409 3nnr_A Transcriptional regulat 23.3 22 0.00074 25.8 0.6 40 87-131 11-50 (228)
410 1fpw_A Yeast frequenin, calciu 23.2 1.4E+02 0.0047 20.7 4.8 47 79-127 19-69 (190)
411 1jhf_A LEXA repressor; LEXA SO 23.0 86 0.0029 23.3 3.9 42 81-128 3-48 (202)
412 3dpj_A Transcription regulator 22.9 28 0.00097 24.2 1.1 28 104-131 26-53 (194)
413 2x4k_A 4-oxalocrotonate tautom 22.8 88 0.003 18.4 3.3 34 82-129 14-47 (63)
414 3iz6_M 40S ribosomal protein S 22.7 56 0.0019 25.3 2.8 31 104-134 59-90 (152)
415 2hqr_A Putative transcriptiona 22.4 10 0.00035 27.8 -1.4 51 80-136 142-197 (223)
416 1p5s_A RAS GTPase-activating-l 22.3 76 0.0026 25.1 3.6 24 80-103 176-199 (203)
417 3cjd_A Transcriptional regulat 22.3 17 0.00057 26.3 -0.3 38 88-130 19-56 (198)
418 3q9s_A DNA-binding response re 22.3 24 0.00082 26.9 0.6 51 80-136 181-236 (249)
419 2cw1_A SN4M; lambda CRO fold, 22.3 36 0.0012 22.4 1.4 24 108-131 15-38 (65)
420 3cw2_K Translation initiation 22.0 20 0.00069 27.3 0.2 17 31-47 120-136 (139)
421 1gdt_A GD resolvase, protein ( 22.0 35 0.0012 25.3 1.5 24 108-131 160-183 (183)
422 2dim_A Cell division cycle 5-l 22.0 1.2E+02 0.004 19.4 4.0 45 74-125 4-49 (70)
423 2w53_A Repressor, SMet; antibi 21.9 29 0.001 24.9 1.0 40 87-131 17-56 (219)
424 2nx4_A Transcriptional regulat 21.8 34 0.0011 24.3 1.3 28 104-131 28-55 (194)
425 1y9q_A Transcriptional regulat 21.7 39 0.0013 24.8 1.7 23 109-131 27-49 (192)
426 2eh3_A Transcriptional regulat 21.7 30 0.001 24.1 1.1 38 88-130 9-46 (179)
427 3o60_A LIN0861 protein; PSI, M 21.7 38 0.0013 24.6 1.6 28 103-130 37-64 (185)
428 1iq3_A Ralbp1-interacting prot 21.6 42 0.0015 23.2 1.8 51 78-128 12-63 (110)
429 2x4h_A Hypothetical protein SS 21.6 53 0.0018 22.6 2.3 43 80-126 9-51 (139)
430 4ds7_A Calmodulin, CAM; protei 21.6 1.7E+02 0.0058 19.0 4.8 41 80-120 3-44 (147)
431 3k2z_A LEXA repressor; winged 21.6 23 0.0008 26.7 0.4 42 81-128 2-46 (196)
432 3geu_A Intercellular adhesion 21.4 33 0.0011 23.9 1.1 27 104-130 21-47 (189)
433 2owa_A Arfgap-like finger doma 21.3 47 0.0016 25.2 2.1 20 81-100 83-111 (138)
434 2crr_A Stromal membrane-associ 21.3 43 0.0015 25.3 1.9 27 21-47 35-62 (141)
435 2kgr_A Intersectin-1; structur 21.3 90 0.0031 21.3 3.4 47 81-127 7-54 (111)
436 1s6c_A KV4 potassium channel-i 21.3 1.2E+02 0.004 21.0 4.1 48 79-127 12-62 (183)
437 3hta_A EBRA repressor; TETR fa 21.2 25 0.00086 25.7 0.5 40 87-131 34-73 (217)
438 1aih_A HP1 integrase; DNA inte 21.0 1.8E+02 0.0061 20.2 5.1 39 77-119 2-40 (170)
439 4fhr_A Flagellar motor switch 20.9 59 0.002 24.9 2.6 34 80-120 2-35 (187)
440 1ais_B TFB TFIIB, protein (tra 20.8 1.2E+02 0.0041 22.5 4.3 43 82-124 81-127 (200)
441 3nnf_A CURA; non-HAEM Fe(II)/a 20.7 53 0.0018 28.8 2.5 36 81-116 24-61 (344)
442 1u5t_A Appears to BE functiona 20.4 96 0.0033 25.4 3.9 34 89-123 42-78 (233)
443 3u5c_S 40S ribosomal protein S 20.3 82 0.0028 24.2 3.3 33 102-134 59-92 (146)
444 1mww_A Hypothetical protein HI 20.3 85 0.0029 21.9 3.2 34 83-130 71-104 (128)
445 2wui_A MEXZ, transcriptional r 20.2 44 0.0015 23.9 1.7 27 104-130 29-55 (210)
446 2cki_A Ulilysin; metalloprotea 20.2 53 0.0018 26.9 2.4 18 78-95 237-254 (262)
447 1x41_A Transcriptional adaptor 20.2 1.3E+02 0.0045 18.7 3.8 37 74-117 3-39 (60)
448 1dgu_A Calcium-saturated CIB; 20.1 1.3E+02 0.0044 20.9 4.1 43 77-120 9-60 (183)
449 2xcz_A Possible ATLS1-like lig 20.1 59 0.002 22.3 2.3 35 82-130 68-102 (115)
450 2crw_A ARF GAP 3, ADP-ribosyla 20.1 59 0.002 25.0 2.4 19 81-99 77-103 (149)
451 3kxa_A NGO0477 protein, putati 20.0 43 0.0015 24.3 1.6 24 108-131 83-106 (141)
No 1
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.92 E-value=4.6e-25 Score=156.16 Aligned_cols=67 Identities=42% Similarity=0.793 Sum_probs=63.3
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 70 HKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 70 ~~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
....++||.||.||.+|++.|+.|++++||+.+|||..++++||.+|||++.||||||||+|+|+++
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3455689999999999999999999999999999999999999999999999999999999999987
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.91 E-value=5e-25 Score=155.30 Aligned_cols=68 Identities=40% Similarity=0.748 Sum_probs=64.0
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 70 HKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 70 ~~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
....++||.||.||.+|++.|+.+|+++||+.+|||..++++||.+|||++.||||||||+|+|+++.
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 12 AGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 34457899999999999999999999999999999999999999999999999999999999999873
No 3
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-21 Score=135.72 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=63.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
.+++||.||.||.+|++.|+.+|+..+|..+||+..++++||.+|||++.+|+|||||+|+|+++..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567999999999999999999999999999999999999999999999999999999999998744
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=129.55 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=59.5
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
...++||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++..
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLD----SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 345689999999999999999999886 8999999999999999999999999999999999854
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.9e-21 Score=131.00 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=59.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+++.||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAIN----HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 45689999999999999999999987 8999999999999999999999999999999999854
No 6
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=126.37 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=60.9
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVP 140 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~ 140 (159)
...++||.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++....
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQ----KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHS----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 345679999999999999999999987 899999999999999999999999999999999997654
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=8.9e-20 Score=123.89 Aligned_cols=64 Identities=13% Similarity=0.237 Sum_probs=59.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+....||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAAN----KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 345679999999999999999999987 8999999999999999999999999999999999854
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-20 Score=127.20 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
...+.+|.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+|+++...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQ----KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345679999999999999999999997 89999999999999999999999999999999998653
No 9
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=123.29 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=59.5
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+++..+|.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKT----QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCC----CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345679999999999999999999886 8999999999999999999999999999999999854
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=122.63 Aligned_cols=64 Identities=17% Similarity=0.363 Sum_probs=59.5
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+.++.+|.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDAN----AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345689999999999999999999987 8999999999999999999999999999999999854
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=8e-20 Score=121.32 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=52.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
+++|.||.||.+|++.|+.+|+.. +||+..++++||..+||++.+|+|||||+|+++++.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ----KYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 578999999999999999999987 899999999999999999999999999999999874
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-19 Score=126.14 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCCc
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVPE 141 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~~ 141 (159)
.++.||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKT----RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 45679999999999999999999997 8999999999999999999999999999999998865543
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.3e-20 Score=123.79 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=59.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
+++..+|.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQET----KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 345679999999999999999999986 89999999999999999999999999999999987543
No 14
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=3.1e-19 Score=122.49 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=60.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCCcc
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVPEK 142 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~~~ 142 (159)
...+|.||.||.+|++.|+.+|+.. +||+..++++||..+||++.+|+|||||+|+++++......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATN----KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 70 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHT----SCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhC----CCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcccC
Confidence 4579999999999999999999987 89999999999999999999999999999999998655443
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-19 Score=122.93 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=59.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
....||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDIN----NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHC----SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 45679999999999999999999987 89999999999999999999999999999999988543
No 16
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.8e-19 Score=127.54 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=58.1
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
+.+.+||.||.||.||+..|+.+|+.++ .|||.+++++|+.++||+++||+|||||+|+-.+-
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~---~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVG---LYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHC---SCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 4567899999999999999999999954 89999999999999999999999999999987654
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=8.5e-20 Score=120.86 Aligned_cols=59 Identities=22% Similarity=0.409 Sum_probs=52.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.+||.||.||.+|++.|+..|+.. +||+..++++||.++||++.+|+|||||+|+++++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNEN----RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 468999999999999999999987 89999999999999999999999999999999876
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=2.5e-19 Score=120.24 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=57.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
++||.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+++++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN----PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 468999999999999999999986 8999999999999999999999999999999999854
No 19
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=1.3e-19 Score=120.93 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
+.||.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFN----KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 468999999999999999999987 89999999999999999999999999999999876
No 20
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.1e-19 Score=122.02 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=59.5
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
+++..||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++...
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQ----KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 345678999999999999999999987 89999999999999999999999999999999987543
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.8e-19 Score=117.74 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=54.1
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
||.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK----QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 6899999999999999999987 89999999999999999999999999999998764
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=1.3e-19 Score=122.92 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=58.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVP 140 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~ 140 (159)
+||.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC----SSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC----CCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 68999999999999999999987 899999999999999999999999999999999885543
No 23
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2e-19 Score=125.16 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=59.1
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+++..+|.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERT----HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 345689999999999999999999886 8999999999999999999999999999999998743
No 24
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.75 E-value=1.4e-19 Score=125.07 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=58.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
..+++|.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++..
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQ----RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34578999999999999999999987 8999999999999999999999999999999998743
No 25
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=4.4e-19 Score=114.95 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=53.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
+||.||.||.+|+..|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ----RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 68999999999999999999876 8999999999999999999999999999998764
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=2.8e-19 Score=118.04 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=54.4
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
||.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+++++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE----NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6899999999999999999987 899999999999999999999999999999998764
No 27
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=6.6e-19 Score=126.40 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=60.1
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 70 HKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 70 ~~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
....++||.||.||.+|+..|+.+|+.. +||+..++++||..|||++.+|+|||||+|+|+++...
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQ----KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 3445679999999999999999999987 89999999999999999999999999999999987543
No 28
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=118.72 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=58.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.++++|.||.||.+|+..|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKT----HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 35678999999999999999999987 899999999999999999999999999999999884
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.73 E-value=5.5e-19 Score=123.61 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=53.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+.+.+||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+|+|+..
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTN----HYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 345679999999999999999999987 8999999999999999999999999999999998853
No 30
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=8.6e-19 Score=115.55 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=47.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
.+++|.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRK----QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC----CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3578999999999999999999987 8999999999999999999999999999999875
No 31
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=118.81 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCCc
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVPE 141 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~~ 141 (159)
...+.||.||.+|++.|+..|+.. +||+..++++||.+|||++.+|+|||||+|+++++.....
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRN----QFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHS----SSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 346679999999999999999987 8999999999999999999999999999999999865543
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=8.9e-19 Score=118.57 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
++|.||.||.+|+..|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ----KYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 68999999999999999999987 8999999999999999999999999999999998754
No 33
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=3.2e-19 Score=120.73 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
.||.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG----RYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 58999999999999999999886 8999999999999999999999999999999988743
No 34
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=1.9e-19 Score=121.63 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=57.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
++||.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN----RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC----SSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 579999999999999999999886 89999999999999999999999999999999987543
No 35
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.73 E-value=8.2e-19 Score=121.24 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=57.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
....+|.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFN----MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999987 899999999999999999999999999999998763
No 36
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2.8e-18 Score=114.28 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=55.3
Q ss_pred CCCCCCccCCHHHHHHHHHHH---HHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFA---DKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ff---ek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
+.+|.||.||.+|++.|+.+| ... +||+..++++||.++||++.+|+|||||+|+++++
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~----~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSN----PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTS----CCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccC----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999988 554 89999999999999999999999999999999987
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1e-18 Score=119.68 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADK-LGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek-~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
.++.||.||.+|+..|+.+|++ . +||+..++++||.++||++.+|+|||||+|+++++...
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~----~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVN----KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTT----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3678999999999999999985 6 89999999999999999999999999999999988554
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=1.1e-18 Score=123.30 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=53.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.+..||.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++++.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 34579999999999999999999886 899999999999999999999999999999999874
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-18 Score=117.11 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
.||.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+++++..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVN----CYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 37999999999999999999886 8999999999999999999999999999999998754
No 40
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=115.85 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
..++.||.||.+|+..|+..|+.. +||+..++++||..+||++.+|+|||||+|+++|+...
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKN----QFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 358899999999999999999986 89999999999999999999999999999999998554
No 41
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=1.3e-18 Score=121.08 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=56.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..+++|.||.||.+|+..|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERT----QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhh
Confidence 34578999999999999999999986 89999999999999999999999999999999876
No 42
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-18 Score=118.74 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=55.6
Q ss_pred CCCCccCCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 76 KTKRTKITEEQKSKMRRFADK-LGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek-~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
.+.||.||.+|++.|+.+|++ . +||+..++++||.+|||++.+|+|||||+|+++++...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN----KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccC----CCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 467999999999999999986 6 89999999999999999999999999999999988553
No 43
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.9e-18 Score=121.74 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=56.4
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCCc
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVPE 141 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~~ 141 (159)
-+.|++||.+|+..|++.|+.+ +|||..++++||..+||++.+|+|||||+|+++|+.....
T Consensus 4 g~~r~kfT~~Ql~~Le~~F~~~----~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 4 GSSGKRKTKEQLAILKSFFLQC----QWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 3567889999999999999987 8999999999999999999999999999999998865543
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.70 E-value=4.5e-18 Score=122.22 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 69 EHKNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 69 ~~~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+.+.+..+|.||.||.+|+..|+.+|+.. +||+..++++||..|||++.+|+|||||+|+|+|+..
T Consensus 19 p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 19 PAPKSGSTGKICKKTPEQLHMLKSAFVRT----QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --------CCSSSSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 33445678999999999999999999986 8999999999999999999999999999999999853
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.70 E-value=3.5e-18 Score=112.75 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+++++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT----HYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 48999999999999999886 899999999999999999999999999999999874
No 46
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=115.60 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=55.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
.++|+.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++++...
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQN----PLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 4567889999999999999997 89999999999999999999999999999999987543
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.4e-18 Score=123.66 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
+..+|.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||+|+++|+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFN----KYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 4678999999999999999999886 899999999999999999999999999999998864
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=7.9e-18 Score=114.83 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=57.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.++.||.||.||.+|++.|+.+|+.. ...+||+..++++||.++||++.+|+|||||+|+++++.
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQH-IGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 45679999999999999999988761 123899999999999999999999999999999998874
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.5e-18 Score=122.42 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=59.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC---------------CCccchhhhhccccCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG---------------ITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG---------------l~r~VvKVWFqNrR~k~kk 136 (159)
..++||.||.||++|+..|+.+|+.. +||+..++++||.++| |++.+|+|||||+|+++++
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~----~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNEN----QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999996 8999999999999999 9999999999999999987
Q ss_pred CCC
Q 044959 137 VRV 139 (159)
Q Consensus 137 ~~~ 139 (159)
...
T Consensus 80 ~~~ 82 (95)
T 2cuf_A 80 RAN 82 (95)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=5.6e-18 Score=115.57 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHH---HHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFA---DKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVP 140 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ff---ek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~ 140 (159)
.||.||.||.+|++.|+.+| ... +||+..++++||..+||++.+|+|||||+|+++++....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~----~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSN----PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTS----CCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccC----CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 37999999999999999988 554 899999999999999999999999999999999875443
No 51
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=1.9e-17 Score=127.34 Aligned_cols=62 Identities=23% Similarity=0.476 Sum_probs=55.2
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
..++||.||.||.+|++.|+.+|+.. +||+..++++||..+||++.+|+|||||+|+|+|+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEH----SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45678899999999999999999997 899999999999999999999999999999999985
No 52
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=126.49 Aligned_cols=62 Identities=19% Similarity=0.375 Sum_probs=57.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.+++||.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kkt 151 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKN----PLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKNT 151 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCCC
Confidence 35678999999999999999999997 899999999999999999999999999999999874
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.67 E-value=1.8e-17 Score=128.82 Aligned_cols=62 Identities=16% Similarity=0.383 Sum_probs=54.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMEN----QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35789999999999999999999997 899999999999999999999999999999999974
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=116.14 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=58.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
+++++||.||.||.+|+..|+++|... +..+||+..++++||.++||++.+|+|||||+|+++++.
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~-~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKH-RFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHT-TTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 456789999999999999999988762 234899999999999999999999999999999999864
No 55
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.66 E-value=9.7e-18 Score=109.68 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=49.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
|.||.+|+..|+..|+.. +||+..++++||..+||++.+|+|||||+|+|+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ----KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc----CCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 789999999999999987 89999999999999999999999999999999875
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.66 E-value=2.9e-17 Score=115.76 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=55.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
+.++|.||.||.+|++.|+..|.. .+..+||+..++++||..+||++.+|+|||||+|+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHH-TTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 456778999999999999999987 122389999999999999999999999999999998763
No 57
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.65 E-value=2.4e-17 Score=129.28 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=51.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVP 140 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~ 140 (159)
..++||.||.||.+|++.|+.+|+.. +||+..++++||..|||++.+|+|||||||+|+|+...+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKC----PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45678999999999999999999997 899999999999999999999999999999999986543
No 58
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=1.4e-17 Score=116.66 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=54.4
Q ss_pred CCCCCccCCHHHHHHHHHHH---HHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFA---DKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ff---ek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
.||.||.||.+|++.|+.+| ... +||+..++++||.++||++.+|+|||||+|+++++..
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSN----PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTS----CCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccC----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 37899999999999999998 554 8999999999999999999999999999999998754
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.65 E-value=2.7e-17 Score=108.23 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=52.3
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
+||.||.+|++.|+..|+.. +..+||+..++++||.++||++.+|+|||||+|+++++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 48999999999999999881 11289999999999999999999999999999999876
No 60
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.65 E-value=5.4e-17 Score=119.08 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=53.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH------------------hC---CCccchhhhhcccc
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGE------------------VG---ITRKMFKVWLNNNR 131 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~e------------------iG---l~r~VvKVWFqNrR 131 (159)
.++||.||.||++|+..|+.+|+.. +|||..++++||.+ || |++.+|+|||||+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~----~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQ----KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 4679999999999999999999886 89999999999999 88 99999999999999
Q ss_pred CCCCCCCC
Q 044959 132 RRPVPVRV 139 (159)
Q Consensus 132 ~k~kk~~~ 139 (159)
++.+++..
T Consensus 83 ~k~k~k~~ 90 (99)
T 1lfb_A 83 KEEAFRHK 90 (99)
T ss_dssp HTTSCCC-
T ss_pred HHHHHhch
Confidence 99987553
No 61
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.64 E-value=8.8e-17 Score=124.26 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=54.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
....||.||.||.+|++.|+..|+.. +||+..++++||.++||++.+|+|||||+|+++|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN----KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 44679999999999999999999997 89999999999999999999999999999999998543
No 62
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=9.5e-17 Score=116.24 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.||.+|+..|+..|+.. +||+..++++||..|||++.+|||||||+|+|+++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNS----SVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 89999999999999987 899999999999999999999999999999998763
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=7.4e-17 Score=113.18 Aligned_cols=63 Identities=13% Similarity=0.236 Sum_probs=53.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
+++.||.||.+|++.|+.+|... +..+||+..++++||..+||++.+|+|||||+|+++++..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h-~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHT-SSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhh-CCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 45667779999999999999871 1228999999999999999999999999999999998853
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=112.58 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=52.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVP 140 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~ 140 (159)
..||.+|++.|+..|++. +||+..++++||..|||++.+|+|||||+|+|+++....
T Consensus 18 k~~t~~Ql~~Le~~F~~~----~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKS----SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred ccCCHHHHHHHHHHHccC----CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 349999999999999997 899999999999999999999999999999999775444
No 65
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-17 Score=122.78 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHh---------------------CCCccchhhhhcc
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEV---------------------GITRKMFKVWLNN 129 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~ei---------------------Gl~r~VvKVWFqN 129 (159)
++.++||.||.||++|+..|+.+|+.. +|||..++++||.++ +|++.+|+|||||
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~----~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqN 77 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQ----KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 77 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecc
Confidence 345789999999999999999999887 899999999999999 7999999999999
Q ss_pred ccCCCCCCCC
Q 044959 130 NRRRPVPVRV 139 (159)
Q Consensus 130 rR~k~kk~~~ 139 (159)
+|++++++..
T Consensus 78 RR~k~kr~~~ 87 (102)
T 2da6_A 78 RRKEEAFRQK 87 (102)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHhhH
Confidence 9999987543
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=5.6e-17 Score=112.11 Aligned_cols=61 Identities=10% Similarity=0.217 Sum_probs=55.0
Q ss_pred CCCCCCccCCHHHHHHHHHHH-HHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFA-DKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ff-ek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
...+.|+.||.+|++.||.+| +.. +||+..++++||.+|||++.+|+|||||+|+++++..
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~----~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVT----KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 345677788999999999999 776 8999999999999999999999999999999999743
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.4e-16 Score=104.81 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=53.3
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 77 TKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
..+..++.+|++.|+.+|++. +||+..++++||.+|||++.+|+|||||+|+|.++...
T Consensus 5 ~~~~~p~~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~~ 63 (64)
T 2e19_A 5 SSGQPPLKNLLSLLKAYYALN----AQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63 (64)
T ss_dssp CSCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCCccHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCCC
Confidence 445677899999999999886 89999999999999999999999999999999988543
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.59 E-value=1.1e-16 Score=123.88 Aligned_cols=60 Identities=18% Similarity=0.391 Sum_probs=56.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.++||.||.||.+|+..|+.+|+.. +||+..++++||..+||++.+|+|||||||+|+||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKS----PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccC----CCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 5788999999999999999999876 89999999999999999999999999999999987
No 69
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.55 E-value=5.7e-16 Score=107.93 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
=|.+|++.|+..|++. +||+..++++||..+||++.+|+|||||+|+++|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~----~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS----QFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGG----GSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3789999999999997 899999999999999999999999999999998863
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-15 Score=103.63 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
..|.+|++.|+.+|+.. +||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 10 ~~t~~ql~~LE~~F~~~----~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQ----KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 57899999999999987 89999999999999999999999999999999998553
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=6.9e-15 Score=101.23 Aligned_cols=51 Identities=10% Similarity=0.324 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 84 EEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 84 ~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
++|+..||.+|... .+||+..++++||.+|||++++|||||||||+++|+.
T Consensus 9 ~~~~~~LE~~F~~~---~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI---TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT---CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999542 2799999999999999999999999999999999873
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.44 E-value=1.3e-14 Score=117.45 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC---------------------CCccchhhhhccc
Q 044959 72 NYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG---------------------ITRKMFKVWLNNN 130 (159)
Q Consensus 72 ~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG---------------------l~r~VvKVWFqNr 130 (159)
..++||.||.||+.|+..|+.+|+.+ +|||..++++||..+| |++.+|+||||||
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~----~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNR 187 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQ----KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHH----CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhh
Confidence 45679999999999999999999998 8999999999999999 9999999999999
Q ss_pred cCCCCC
Q 044959 131 RRRPVP 136 (159)
Q Consensus 131 R~k~kk 136 (159)
|++.+.
T Consensus 188 R~~~k~ 193 (194)
T 1ic8_A 188 RKEEAF 193 (194)
T ss_dssp HHHCC-
T ss_pred hhhhhc
Confidence 998874
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=2.4e-14 Score=97.35 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=49.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
..||.+|++.|+..|... +..+||+..++++||..+||++.+|+|||||+|+++++..
T Consensus 3 g~f~~~~~~~L~~~f~~h-~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQH-LTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp ---CHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 379999999999988822 2348999999999999999999999999999999998743
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.36 E-value=3.2e-13 Score=112.06 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=53.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC---------------------CCccchhhhhcc
Q 044959 71 KNYKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG---------------------ITRKMFKVWLNN 129 (159)
Q Consensus 71 ~~~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG---------------------l~r~VvKVWFqN 129 (159)
...++||.||+||++|+..|+.+|+.+ +|||..++++||.++| |++.+|+|||+|
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~----~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqN 213 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQ----KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 213 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHH
Confidence 345679999999999999999999997 8999999999999998 899999999999
Q ss_pred ccCCCC
Q 044959 130 NRRRPV 135 (159)
Q Consensus 130 rR~k~k 135 (159)
||+...
T Consensus 214 RR~~~~ 219 (221)
T 2h8r_A 214 RRKEEA 219 (221)
T ss_dssp HHTTCC
T ss_pred hhhhhh
Confidence 998753
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.8e-13 Score=95.18 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCC
Q 044959 84 EEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRP 134 (159)
Q Consensus 84 ~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~ 134 (159)
.+|+..|+.+|+.+ .+|+.+++++||..+||+.+||||||||+|+..
T Consensus 14 k~ql~~Lk~yF~~n----~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMN----MEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 58999999999997 899999999999999999999999999999744
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.32 E-value=4.8e-13 Score=110.53 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=54.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
.++.|+.|+.+|++.|++.|+.. +||+..++++||.++||+++||||||||||.|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~----~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRK----QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 47889999999999999999887 8999999999999999999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.07 E-value=2.1e-11 Score=88.83 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=49.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..|+.+|++.|+++|... ..-+||+.+++++||.++||++.+|++||+|+|.+.++
T Consensus 10 ~~l~~~~~~iL~~W~~~h-~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEH-RYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHHT-SGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 468999999999977652 23389999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.13 E-value=1.9e-07 Score=58.40 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.5
Q ss_pred cchhhhhccccCCCCCCCC
Q 044959 121 KMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 121 ~VvKVWFqNrR~k~kk~~~ 139 (159)
++|||||||||+|+|+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 5899999999999998544
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=95.60 E-value=0.023 Score=38.83 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=37.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
..+|+.+.+||.|++.......+ .| ..+.++|.++||++.+|..|...
T Consensus 14 ~~~~~~~~~ys~e~k~~~v~~~~-~g--------~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 14 TKGKRPLRSLTPRDKIHAIQRIH-DG--------ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCSSCCSSCCHHHHHHHHHHHH-HT--------CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHH-CC--------CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34456788999999887777664 33 13778999999999999999854
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=95.32 E-value=0.015 Score=37.05 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.|.+||+|.|.++....+. | ......+.++|.++||++.+|..|...
T Consensus 2 ~r~~ys~efK~~~~~~~~~-g----~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN-D----NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH-C----TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHc-C----CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 3568999999988555433 2 111123789999999999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=94.93 E-value=0.013 Score=41.60 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=38.7
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccC
Q 044959 77 TKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRR 132 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~ 132 (159)
+.|+.||.|++.++....+..| .. .+.++|.++||++.+|.-|..+...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g----~~---~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP----DL---RKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT----TS---CHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC----CC---cHHHHHHHhCCCHHHHHHHHhchhh
Confidence 4688999999999998875543 22 2347889999999999999987654
No 82
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=93.81 E-value=0.061 Score=36.71 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 79 RTKITEEQKSKMRRFADKL-GWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~-GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
|.+||.+++..+....... | ..+.++|.++||++.+|..|...-+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--------~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--------ASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--------SCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------ChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4689999998877655332 2 2478999999999999999986544
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=93.44 E-value=0.11 Score=29.68 Aligned_cols=43 Identities=9% Similarity=0.320 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..++.++++.+..... .| . ...++|..+||++.+|..|+..-+
T Consensus 4 ~~l~~~~~~~i~~~~~-~g-----~---s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKL-LN-----V---SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHH-TT-----C---CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHH-cC-----C---CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4688998877776553 23 1 377899999999999999996543
No 84
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.25 E-value=0.06 Score=37.76 Aligned_cols=39 Identities=10% Similarity=0.289 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.+.|++++... +.+.++.++.||.+.+|+-.+||.||--
T Consensus 18 ~e~L~~Yy~~h----k~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAH----QQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHT----CCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHh----cccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 36789999885 5699999999999999999999999943
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=92.98 E-value=0.07 Score=31.28 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++|.+|++.+....+ .| ..+.++|..+||++.+|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~-~g--------~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KG--------HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHH-TT--------CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHH-cC--------CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 578888887777643 33 1467899999999999999997544
No 86
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=92.64 E-value=0.17 Score=35.03 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=36.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHhCCCccchhhhhccc
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHD-EEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d-~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
+.+||.|++..+.......|. .+.+ ...+.++|.++||++.+|..|..--
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~--~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQG--EYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccc--ccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 457999999887775533210 1222 2578999999999999999998753
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=90.52 E-value=0.28 Score=36.31 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCCCccCCHHHHHHHHHHH-HHhCCCCCCCCHHHHHH-HHHHh--CCCccchhhhhcccc
Q 044959 76 KTKRTKITEEQKSKMRRFA-DKLGWKPQRHDEEEVGK-FCGEV--GITRKMFKVWLNNNR 131 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ff-ek~GW~iq~~d~~~r~e-fc~ei--Gl~r~VvKVWFqNrR 131 (159)
++.|+.+|-+|+.+|.+++ +.. ......++.. +..+. ||++.+|.-|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~----~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ----NRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS----SCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 7899999999999999999 554 2444444444 33367 899999999987744
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.41 E-value=0.085 Score=35.56 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=41.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
...-..+|+.|++.|.-+++- -..+++|..+||+..+|+.++++-+.|++.
T Consensus 16 ~~~~~~Lt~~e~~vl~l~~~g----------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 16 ERDVNQLTPRERDILKLIAQG----------LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp -CCGGGSCHHHHHHHHHHTTT----------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHccCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 445567999999998886422 256789999999999999999998888875
No 89
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=90.25 E-value=0.13 Score=33.76 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=37.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
|+.+|+++.+.+..+.+++--..... ..++||..+||++.+|.-|..+.+
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~---sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM---SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS---CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 77899999888877766542101112 567999999999999999998754
No 90
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=89.24 E-value=0.12 Score=35.68 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=40.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVRV 139 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~ 139 (159)
..+|+.|++.|.-+++-. ..+++|..+||+..+|+.++++-+.|++....
T Consensus 26 ~~Lt~~e~~vl~l~~~g~----------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL----------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 358999999998875332 45889999999999999999999888876433
No 91
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=88.17 E-value=0.65 Score=31.45 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=33.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
..+|.+++.++..... .|+ .+.++|..+||++.+|.-|+..
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~--------s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGI--------RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHH
Confidence 3699999999988764 453 2568899999999999999975
No 92
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=87.46 E-value=0.81 Score=31.89 Aligned_cols=43 Identities=9% Similarity=0.315 Sum_probs=35.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+|.+++..+...+. .|+ .+.++|..+||++.+|.-|+...+
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~--------s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV--------SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHccc
Confidence 6799999999888763 453 357889999999999999998654
No 93
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=86.58 E-value=0.82 Score=32.84 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=34.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
..||.+++.++..... .|| -+.++|..+||++.+|.-|+..-
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~--------s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV--------RPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999988774 453 26788999999999999998753
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=85.71 E-value=0.18 Score=32.61 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.+|+.|++.|.-+++ | . ..+++|..+|++..+|+.++++-+.+++.
T Consensus 16 ~L~~~e~~vl~l~~~--g-----~---s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--G-----L---PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT--T-----C---CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc--C-----C---CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 478888888877542 2 1 44689999999999999999998888875
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=85.65 E-value=0.21 Score=35.40 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=39.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
...+|+.|++.|.-+++-. ..+++|..+||+..+|+.++++-+.|++-
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~----------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF----------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC----------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 5679999999998876432 34899999999999999999987777653
No 96
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=85.28 E-value=1.6 Score=28.20 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHhCCCccchhhhhcccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHD---EEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d---~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+|++|++.+..+.+.+ ...- .-...+||..+||++.+|.-|..+++
T Consensus 2 lt~~~~~~~~~l~~~l----~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIW----EKKKNELGLSYESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 6788888777666553 1100 01357899999999999999997764
No 97
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.27 E-value=1.1 Score=32.76 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=35.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRR 132 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~ 132 (159)
..+|.+++.++..... .|+ .+.++|..+||++.+|..|+...+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--------s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--------RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4799999999988774 442 3567899999999999999986543
No 98
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=84.57 E-value=0.16 Score=34.47 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=39.8
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.=..+|+.|++.|.-+++-. ...++|..+||+..+|+.++++-+.|++.
T Consensus 26 ~l~~Lt~~e~~vl~l~~~g~----------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAKGY----------SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp TGGGCCSHHHHHHHHHHTTC----------CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 34568999999998865322 34589999999999999999999988875
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=84.51 E-value=0.18 Score=32.01 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.-..+|+.|++.|.-+++ | . ...++|..+|++..+|+.+++.-+.+++.
T Consensus 8 ~~~~L~~~e~~il~~~~~--g-----~---s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQ--D-----K---TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHHHTT--T-----C---CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHc--C-----C---CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 345689999999888642 2 1 56789999999999999999987776654
No 100
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=83.89 E-value=0.63 Score=36.33 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=36.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHhCCCccchhhhhcc
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHD---EEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d---~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
|-.||.|++.....+.++- + ..|. .-.+.++|.+|||++.+|--|...
T Consensus 21 ~r~yt~EfK~aAv~l~~~~-~--~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENE-L--MESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHH-H--CC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHcc-c--cccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 5569999999988776552 1 1121 247899999999999999999773
No 101
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=83.18 E-value=0.39 Score=33.26 Aligned_cols=50 Identities=6% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
...-..||+.|++.|.-+++ |. ...++|..+||+..+|+..+.+=+.|++
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~~--G~--------s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVEK--GF--------TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -----CCCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34456799999999988873 31 5789999999999999999998877775
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=82.88 E-value=0.26 Score=31.53 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.+++.|.+.|.-.+--. ....-..+++|..+||++.+|+.+.+.-+.+++..
T Consensus 5 ~L~~~er~il~l~~~l~-----~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-----MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-----SSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccC-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888888887765110 01223568899999999999999999988888763
No 103
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=82.25 E-value=0.12 Score=35.04 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHH-HHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 81 KITEEQKSKMRR-FADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 81 kFT~eQkekLe~-ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.+++.|++.|.- |++- -..+++|..+||+..+|+++++.-|.++++
T Consensus 37 ~L~~~~r~vl~l~~~~g----------~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG----------WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC----------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467778877766 3322 257889999999999999999887766543
No 104
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=81.18 E-value=0.54 Score=37.21 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=41.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
..+|+.|++.|.-+++-. ..+++|..+|++..+||+..++-|.+++..
T Consensus 196 ~~L~~~erevl~L~~~G~----------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL----------SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 579999999988875332 578899999999999999999999999863
No 105
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=80.76 E-value=0.45 Score=36.54 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=32.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++|.+|++.|..+.+++--.+.... -..++||+.+||+..+|.-|..+++
T Consensus 5 ~~lt~~~~~~~~~~~~~l~~~r~~~g-~t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 5 KPLTQEQLEDARRLKAIYEKKKNELG-LSQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHTTTTT-CCSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 35778888655554444310011111 1467899999999999999998744
No 106
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=79.16 E-value=2.3 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.|..+-+..||. ..+||..+||++.+|.-|..+.+
T Consensus 8 ~~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 8 ERIRARRKKLKIR--------QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHcCCC
Confidence 3445555555543 57899999999999999998743
No 107
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=78.40 E-value=3.7 Score=26.73 Aligned_cols=22 Identities=9% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|..++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5789999999999999999875
No 108
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=78.38 E-value=2.5 Score=29.32 Aligned_cols=45 Identities=7% Similarity=0.058 Sum_probs=32.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC--CCccchhhhhccccC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG--ITRKMFKVWLNNNRR 132 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG--l~r~VvKVWFqNrR~ 132 (159)
.++|+++++.+....+..+| + ..+++.++| ++..+|..|++....
T Consensus 59 ~~l~~~~~~~i~~~~~~~~~-----s---~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRAASNSCK-----T---ARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHHHHHCCC-----C---HHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhCCCC-----C---HHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 36899999988887433222 2 356777888 899999999987765
No 109
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=78.01 E-value=0.21 Score=35.03 Aligned_cols=45 Identities=7% Similarity=0.038 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
.+++.|++.|.-++ ..-..+++|..+||+..+|+.+++.-|.+++
T Consensus 109 ~L~~~~r~v~~~~~----------~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLTYLI----------RGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHHHHT----------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH----------cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57777777777222 1225688999999999999999987766654
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=77.91 E-value=0.28 Score=30.73 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.+++.|++.+.-.+-. . -..+++|..+|+++.+|+.+.+.-+.++++
T Consensus 15 ~L~~~~r~il~l~~~~------g---~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL------G---LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTS------C---CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHc------C---CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4788888888774411 1 246789999999999999999987777665
No 111
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=76.65 E-value=2.8 Score=25.62 Aligned_cols=36 Identities=6% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccC
Q 044959 89 KMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRR 132 (159)
Q Consensus 89 kLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~ 132 (159)
.|..+-+..||. ..+||..+||++.+|.-|..+.+.
T Consensus 7 ~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 7 RLKKRRIALKMT--------QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 444555555432 578999999999999999987654
No 112
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=76.56 E-value=0.4 Score=35.77 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...++++|++.||++.+|-..|.|+
T Consensus 61 ~~~~tv~~IA~~AGvs~~t~Y~~F~sK 87 (229)
T 3bni_A 61 YDALSTRAVALRADVPIGSVYRFFGNK 87 (229)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hhhccHHHHHHHHCCCchhHHHHcCCH
Confidence 456788999999999999999999885
No 113
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=75.51 E-value=0.7 Score=35.89 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=39.5
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
....+|+.|++.|.-+++-. ..+++|..+||++.+|+..++|-+.|+.-
T Consensus 172 ~~~~Lt~~e~~vl~~~~~g~----------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 172 PKQMLSPREMLCLVWASKGK----------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGGSCCHHHHHHHHHHHTTC----------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CcCCCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 35679999999987766321 45789999999999999999998887753
No 114
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=75.05 E-value=3.6 Score=24.99 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCccchhhhhccccC
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNRR 132 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR~ 132 (159)
..+||..+||++.+|.-|..+.+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999987554
No 115
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=74.09 E-value=0.66 Score=31.25 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPV 137 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~ 137 (159)
.+++.|++.+.-.+-- .....-..+++|..+||++.+|+.+.+.-+.+++..
T Consensus 18 ~L~~~er~vl~l~~~l-----~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGL-----LDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTT-----TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888775520 000223678899999999999999999998888764
No 116
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=73.97 E-value=1.9 Score=27.71 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
.+++.|.+.+.-.+-- .....-..+++|..+|+++.+|+.+.+.-+.+++
T Consensus 10 ~L~~~er~il~l~~~l-----~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGL-----IDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTT-----TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhc-----ccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788999998886620 0002235678999999999999999988777766
No 117
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=73.68 E-value=3.9 Score=25.30 Aligned_cols=23 Identities=13% Similarity=0.305 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999987643
No 118
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=72.19 E-value=1 Score=33.61 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...+.++|++.||++.+|-..|.|+-
T Consensus 62 ~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 62 LADISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 5567899999999999999999998763
No 119
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=71.21 E-value=0.84 Score=35.41 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=39.1
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
....+|+.|++.|.-+++- . ..+++|..+||++.+|+..++|-+.|+.-
T Consensus 170 ~~~~Lt~~e~~vl~~~~~g-------~---s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIAVG-------K---TMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCCHHHHHHHHHHTTT-------C---CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHcC-------C---CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3467999999998776522 2 45788999999999999999998887753
No 120
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=71.02 E-value=0.038 Score=41.77 Aligned_cols=25 Identities=4% Similarity=-0.133 Sum_probs=16.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHh
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKL 97 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~ 97 (159)
...||.||.||++|++.|+..|+..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~ 158 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQAN 158 (169)
T ss_dssp -------EEEECCCCEECCSSCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCC
Confidence 5679999999999999999988664
No 121
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=70.97 E-value=0.98 Score=32.87 Aligned_cols=39 Identities=5% Similarity=0.006 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 35 ~aa~~lf~~~G-----~~~~tv~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 35 NAAIEVLAREG-----ARGLTFRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHHHHTC-----TTTCCHHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHHHHhC-----hhhccHHHHHHHcCCCcchHHHhCCCHH
Confidence 33444555543 5667899999999999999999998864
No 122
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=70.75 E-value=0.93 Score=33.55 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=34.8
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-Cccchhhhhccc
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGI-TRKMFKVWLNNN 130 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl-~r~VvKVWFqNr 130 (159)
+-|+||+|..+++.+.... ...+.++|...|| ++.+|--|++..
T Consensus 9 RPtk~t~e~~e~I~~~i~~---------G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 9 RPSDYMPEVADDICSLLSS---------GESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp -CCSCCTTHHHHHHHHHHT---------TCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHC---------CCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 3489999998887776532 2467889999999 899999999764
No 123
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=70.47 E-value=5.3 Score=24.53 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 5789999999999999999775
No 124
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=70.19 E-value=1.8 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.395 Sum_probs=29.8
Q ss_pred cCC--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 81 KIT--EEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 81 kFT--~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.++ +++.+.+..... .| . ...++|..+||++.+|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~-~g-----~---s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAK-MG-----Y---TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHH-TT-----C---CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHH-cC-----C---CHHHHHHHHCcCHHHHHHHHH
Confidence 577 788777776543 33 1 467899999999999999985
No 125
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=70.15 E-value=5.1 Score=24.98 Aligned_cols=36 Identities=3% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.|...-+..||. .++||..+||++.+|.-|..+.+
T Consensus 10 ~~l~~~r~~~g~s--------q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 10 EHLMELITQQNLT--------INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 3444455554433 47899999999999999988755
No 126
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=69.67 E-value=4 Score=26.19 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..||.+.+..+.... || ..++||..+||+..+|.-|-.+.+
T Consensus 9 ~~~~g~~lr~~R~~~---gl--------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKL---SL--------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHT---TC--------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHc---CC--------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 478899888877543 32 357899999999999999998764
No 127
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=69.63 E-value=0.78 Score=33.09 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=37.4
Q ss_pred ccCCHHHHHHHHHH-HHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRF-ADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~f-fek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.|++.+.-+ ++-. ...++|..+|+++.+|+.|++.-+.++++
T Consensus 21 ~~L~~~~r~vl~l~y~~g~----------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDY----------SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45889999888875 4222 56889999999999999999988876654
No 128
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=68.58 E-value=2 Score=27.67 Aligned_cols=23 Identities=9% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..++|..|||++.+|.-|..+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 57899999999999999998754
No 129
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=68.15 E-value=2.4 Score=25.47 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998754
No 130
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=67.81 E-value=0.51 Score=29.06 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
...++|..+|+++.+|+.++++-+.|++-
T Consensus 15 s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 34689999999999999999988877764
No 131
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=67.80 E-value=6.1 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|..+.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4678888888888888887654
No 132
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=67.58 E-value=1.3 Score=33.34 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+.
T Consensus 61 ~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 61 LADISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4567899999999999999999998764
No 133
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=66.04 E-value=7.2 Score=24.60 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998753
No 134
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=65.92 E-value=16 Score=26.15 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=34.5
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhCCCcc--chhhhhc
Q 044959 77 TKRTKITEEQKSKMRRFADKLGWK-PQRHDEEEVGKFCGEVGITRK--MFKVWLN 128 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek~GW~-iq~~d~~~r~efc~eiGl~r~--VvKVWFq 128 (159)
..|..+|++|++.|.+.|...--. --+.+..+...+-..+|.... .++..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~ 59 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 356789999999999987654110 125778888888888886543 3444443
No 135
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=65.28 E-value=5.9 Score=25.79 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++|..+-++.||. .++||..+||++.+|.-|..+.+
T Consensus 21 ~~l~~~r~~~gls--------q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 21 IVLQEHLRNSGLT--------QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTTTCC--------HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 4445555554432 47888899999999998887654
No 136
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=65.12 E-value=1.3 Score=32.81 Aligned_cols=32 Identities=6% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
...-..+++|..+||++.+|+.+++.-+.+++
T Consensus 212 ~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 212 YKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp --------------------------------
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 34557889999999999999999988776653
No 137
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=64.42 E-value=5.5 Score=26.39 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|..++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~ 46 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGI 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHhCC
Confidence 4567777777777777777654
No 138
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=64.20 E-value=6.8 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+||..+||++.+|.-|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56788888888888888887643
No 139
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=63.98 E-value=3.1 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998754
No 140
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=63.90 E-value=2.4 Score=31.78 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=38.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++- . ..+++|.+++++.++|++-+.|=+.|+.-
T Consensus 148 ~~LT~rE~~vL~~l~~g-------~---s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG-------L---TNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHHHTT-------C---CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHCC-------C---CHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 46899999888877743 1 45789999999999999999999988864
No 141
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=63.12 E-value=3.9 Score=30.38 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=38.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++- . ..+++|.+++++.++|++-..+=|.|++-
T Consensus 158 ~~Lt~rE~~vL~~l~~g-------~---s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 158 AKLTKREQQIIKLLGSG-------A---SNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HTSCHHHHHHHHHHTTT-------C---CHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred ccCCHHHHHHHHHHHcC-------C---CHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 35899999988887742 1 45788999999999999999999988864
No 142
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=62.65 E-value=2.6 Score=33.86 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=39.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
...+|+.|++.|.-.++-. ..+++|..+||++++|+..+.|=+.|++-
T Consensus 195 ~~~Lt~re~~vl~~~~~G~----------s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSRGK----------TNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCHHHHHHHHHHHTTC----------CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4679999999988876322 46789999999999999999999988864
No 143
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=62.52 E-value=16 Score=24.83 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGI--TRKMFKVWLN 128 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl--~r~VvKVWFq 128 (159)
..+....+|.+|++.|.+.|...-- .--+.+..+...+...+|+ +...|+.+|+
T Consensus 23 ~~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 23 SEQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp TTCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455678999999999998776410 1235778999999998875 5667777764
No 144
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=62.46 E-value=2.5 Score=31.32 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 36 l~aA~~lf~~~G-----~~~~t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 36 LSVAVQVFIERG-----YDGTSMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHcC-----ccccCHHHHHHHHCCChhHHHHhCCCHH
Confidence 455555565644 4556889999999999999999998753
No 145
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=61.90 E-value=1.5 Score=30.92 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...++++|++.||++.+|-..|.|+
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK 61 (208)
T 3cwr_A 35 AAAMTMEGVASEAGIAKKTLYRFASGR 61 (208)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHhccHHHHHHHhCCCHHHHHHHcCCH
Confidence 456688999999999999999999875
No 146
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=61.49 E-value=1.1 Score=32.17 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.+++.|++.+.-++.. .-..+++|..+|+++.+|+.+++.-|.++++
T Consensus 25 ~L~~~~r~vl~l~~~~---------g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE---------DYSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTS---------CCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4778888877664311 1256889999999999999999988777654
No 147
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=61.47 E-value=2.5 Score=28.47 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.+|+++-+++..+...+| ..+.....+||..|||++.+|.-.+.+
T Consensus 10 ~~~~~~~~~IL~~L~~~~----~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELG----EGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHC----SSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC----CCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 456788777878777762 234567899999999999998876554
No 148
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=60.77 E-value=5.6 Score=28.04 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=29.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-.+|.+++..+.... | . ..++||..+||+..+|.-|-.+.+
T Consensus 69 ~~~~~~~l~~~R~~~---g-----l---sq~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKL---S-----L---TQKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TTCCHHHHHHHHHHT---T-----C---CHHHHHHHHCSCTTHHHHHHHTSS
T ss_pred cCCCHHHHHHHHHHc---C-----C---CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 346677766665433 2 2 356899999999999999998754
No 149
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=60.76 E-value=5.7 Score=28.22 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| | + ..++++|++.||++.+|-..|.|+-
T Consensus 21 l~aA~~lf~~~G----~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 21 LAAAVRVFSEEG----L-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHC----T-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHhcC----c-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 344445566655 5 5 7899999999999999999998753
No 150
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=59.98 E-value=2.7 Score=30.10 Aligned_cols=28 Identities=4% Similarity=0.216 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 35 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 35 YAQVSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp CSCCCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4566889999999999999999998753
No 151
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=59.89 E-value=3.4 Score=26.57 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCccchhhhhcccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
...+||..+||++.+|.-|..+.+
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 468999999999999999998865
No 152
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=59.84 E-value=8.4 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchh-hh
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFK-VW 126 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvK-VW 126 (159)
-.+|++|+.++.+.|..+.=.--+.+.+++..+=...||+..++. +|
T Consensus 25 W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 25 WAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp SCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 347999999999999887422233567888888888999988876 55
No 153
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=59.67 E-value=4.4 Score=25.37 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
..+||..+||++.+|.-|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5789999999999999999875
No 154
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=59.50 E-value=3.3 Score=29.50 Aligned_cols=39 Identities=8% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 38 ~aa~~l~~~~G-----~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 38 KVATELFREKG-----YYATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHTC-----TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHcC-----cccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34444555533 4567899999999999999999998764
No 155
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=59.42 E-value=3.1 Score=32.54 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
...+|+.|++.|.-.++-. ..+++|..+||++++|+.-+.|=+.|+.-
T Consensus 173 ~~~Lt~re~~vl~~~~~G~----------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVGK----------TYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp GCCCCHHHHHHHHHHHTTC----------CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCC----------CHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 3456666666665554221 35789999999999999999998888753
No 156
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=59.42 E-value=24 Score=25.32 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=35.1
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-------hCCCccchhhhhccccCCCC
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGE-------VGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~e-------iGl~r~VvKVWFqNrR~k~k 135 (159)
+.++|.++++.+.++.+.. ...+..++.+...+ +.++..+|.-|++..+..-.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~----~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~ 140 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQN----PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPF 140 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHC----SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCS
T ss_pred CCCCCHHHHHHHHHHHHHC----ccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCc
Confidence 5678999999998877653 23344443333322 35899999999998766543
No 157
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=58.76 E-value=3.4 Score=29.00 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 86 QKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
=++...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 16 il~aa~~lf~~~G-----~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 56 (196)
T 3he0_A 16 ILAAAEQLIAESG-----FQGLSMQKLANEAGVAAGTIYRYFSDKE 56 (196)
T ss_dssp HHHHHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHhC-----cccCCHHHHHHHhCCCcchHHHhcCCHH
Confidence 3445555565644 4567899999999999999999998753
No 158
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=58.37 E-value=0.93 Score=32.98 Aligned_cols=29 Identities=3% Similarity=-0.068 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..+++|..+|+++.+|+.+++.-|.++++
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999887766653
No 159
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=58.36 E-value=4.5 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 57899999999999999998753
No 160
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=58.32 E-value=4.4 Score=28.77 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 43 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 70 (212)
T 3nxc_A 43 SQRITTAKLAASVGVSEAALYRHFPSKT 70 (212)
T ss_dssp ---CCHHHHHHHTTSCHHHHHTTCSSHH
T ss_pred hhhcCHHHHHHHhCCChhHHHHHCCCHH
Confidence 5677899999999999999999998753
No 161
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=57.74 E-value=8.9 Score=29.41 Aligned_cols=53 Identities=6% Similarity=0.137 Sum_probs=33.9
Q ss_pred CCCCCCccCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 74 KAKTKRTKITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 74 ~kKR~RTkFT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++++.|...|.+++ +.-.+.|.+.| .+...+.++|+++||++.+|-..|.|+-
T Consensus 8 ~~r~~~~~~~r~~Il~aA~~l~~~~G-----~~~~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 8 RPERRQEPLSRERIVGAAVELLDTVG-----ERGLTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp --------CCHHHHHHHHHHHHHHTT-----TTTCCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCCCCCccCHHHHHHHHHHHHHhcC-----cccCCHHHHHHHHCCChHHHHHhcCCHH
Confidence 34555666777764 44455666643 5566889999999999999999998753
No 162
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=57.72 E-value=4.5 Score=29.29 Aligned_cols=28 Identities=7% Similarity=0.302 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 103 RHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 103 ~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
. +...++++|++.||++.+|-..|.|+.
T Consensus 37 G-~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 37 G-EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp C-TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred C-CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 5 778899999999999999999998764
No 163
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=57.34 E-value=8.5 Score=24.95 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=38.1
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
...-..+|.++++.|...|...-- .--+.+..+...+...+|++...++.+|.
T Consensus 15 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 15 YFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 444467899999999998876420 01246688999999999999988888875
No 164
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=57.30 E-value=7.8 Score=28.37 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++..|-..|.|+-
T Consensus 53 ~~~~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 53 IHSVGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp STTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4567889999999999999999998753
No 165
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=56.71 E-value=10 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 83 TEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 83 T~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
|.|||+.|-+- .-+..++.||.+...|.||.+--
T Consensus 12 T~EQK~~lI~~--------------VT~a~~eslgap~esVrVlItE~ 45 (70)
T 3ej9_B 12 SVARKQQLIRD--------------VIDVTNKSIGSDPKIINVLLVEH 45 (70)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHH--------------HHHHHHHHcCCChHHEEEEeeeC
Confidence 68999887543 45678999999999999999753
No 166
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=56.61 E-value=2.8 Score=30.73 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=39.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++- . ..+++|++++++.++|++-..|=+.|+.-
T Consensus 153 ~~Lt~rE~~vl~~l~~g-------~---s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIAQG-------L---PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHHTT-------C---CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcC-------C---CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46999999998888743 2 36889999999999999999998888753
No 167
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=56.20 E-value=3.1 Score=30.11 Aligned_cols=29 Identities=7% Similarity=0.305 Sum_probs=2.9
Q ss_pred CCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 103 RHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 103 ~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+...++++|++.||++.+|-..|.|+-
T Consensus 47 G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 75 (212)
T 2np3_A 47 GFDATSLRRIAETAGVDQSLVHHFYGTKE 75 (212)
T ss_dssp ------------------------CCC-C
T ss_pred CcccccHHHHHHHcCCCHHHHHHHhCCHH
Confidence 35678999999999999999999998764
No 168
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=55.92 E-value=6.3 Score=26.44 Aligned_cols=39 Identities=5% Similarity=0.200 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHhCCCccchhhhhcc
Q 044959 86 QKSKMRRFADKLGWKPQRHD-EEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~d-~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
-++++.++-+.. +.+ .-.++++|..+||+++.|.-.|.-
T Consensus 3 ~~~~i~~~i~~~-----~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 3 AKELIQNIIEES-----YTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHHH-----TTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----ccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355666666663 444 557899999999999999887754
No 169
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=55.61 E-value=14 Score=24.24 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|..++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~ 41 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGR 41 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3456666666666666666554
No 170
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=55.53 E-value=4.1 Score=29.13 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
-+...++++|+..||++.+|=..|.|+
T Consensus 30 ~~~~t~~~IA~~agvsk~tlY~~F~sK 56 (192)
T 2fq4_A 30 FKAVTVDKIAERAKVSKATIYKWWPNK 56 (192)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cccccHHHHHHHcCCCHHHHHHHCCCH
Confidence 456789999999999999999999875
No 171
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=55.48 E-value=12 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|..++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~ 49 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNP 49 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCG
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5679999999999999998874
No 172
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=55.30 E-value=3.1 Score=30.91 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 31 ~~~~tv~~IA~~agvs~~t~Y~~F~sK~ 58 (231)
T 2qib_A 31 PDEVSIDEIASAAGISRPLVYHYFPGKL 58 (231)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred chhcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4567899999999999999999998753
No 173
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=54.83 E-value=6.8 Score=26.56 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=49.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..++.|-.-|+|.-++..+..+.+| ..+.....|-++=+.-||+...|+.=+|.-|..++|
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG--~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG--VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC--TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC--CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 3578899999999999999999999 566667888888777789999999888876655443
No 174
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=53.83 E-value=3.8 Score=28.74 Aligned_cols=27 Identities=0% Similarity=-0.059 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...+.++|++.||++.+|-..|.|+
T Consensus 35 ~~~~s~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 35 IGRGGHADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp CSSCCHHHHHHHHTSCHHHHHHHCCSH
T ss_pred cccccHHHHHHHhCCCHHHHHHHcCCH
Confidence 456788999999999999999999885
No 175
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=53.58 E-value=4.6 Score=27.34 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCccchhhhhcc
Q 044959 109 VGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqN 129 (159)
..+||+.|||++..|--|+.+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 789999999999999999975
No 176
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=53.58 E-value=13 Score=23.28 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.|.|||++|-+-. -+.++..+|+++..|-|-|+-.
T Consensus 10 rt~eqK~~L~~~i--------------t~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 10 LDVGKKREFVERL--------------TSVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHTCCTTSCEEEEECC
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCcCcceEEEEEEEe
Confidence 6899998876643 3457888999999988877654
No 177
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=53.37 E-value=35 Score=24.03 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=31.6
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHh--------C--CCccchhhhhccccC
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEV--------G--ITRKMFKVWLNNNRR 132 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~ei--------G--l~r~VvKVWFqNrR~ 132 (159)
.+.++|.++++.+.++.... ...+.. +++..+ | ++..+|.-|++....
T Consensus 87 ~~~~~~~~~~~~I~~~~~~~----~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 87 KPKVATPKVVEKIAEYKRQN----PTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CCSSSCHHHHHHHHHHHHHC----TTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCCHHHHHHHHHHHHhC----cchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 35678999999999977653 123333 333333 5 899999999986554
No 178
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=52.95 E-value=24 Score=24.29 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 84 EEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 84 ~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.-+++.+++..++.+|. +.+.|+.|||++.+|.-|+.
T Consensus 40 ~~Er~~I~~aL~~~~GN--------~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRN--------VSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHHHHTTSC--------HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHH
Confidence 33455566666665443 56889999999999988875
No 179
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=52.03 E-value=6.6 Score=27.89 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCC
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRP 134 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~ 134 (159)
+.-.+.|.+.| .+...++++|++.||++.+|-..|.|+-.-+
T Consensus 24 ~aa~~l~~~~G-----~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll 65 (207)
T 2rae_A 24 TVGIELFTEQG-----FDATSVDEVAEASGIARRTLFRYFPSKNAIP 65 (207)
T ss_dssp HHHHHHHHHHC-----TTTSCHHHHHHHTTSCHHHHHHHCSSTTTGG
T ss_pred HHHHHHHHHcC-----cccCCHHHHHHHhCCCcchHhhhCCCHHHHH
Confidence 33444555544 4567889999999999999999998876544
No 180
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=51.92 E-value=3.9 Score=29.15 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=32.0
Q ss_pred CHHHHHHHHH----HHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 83 TEEQKSKMRR----FADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 83 T~eQkekLe~----ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+-++++.+ .|.+. ..+...++++|++.||++.+|-..|.|+-
T Consensus 11 ~~~~r~~Il~aA~~lf~~~-----G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 58 (217)
T 3nrg_A 11 PEEKRSRLIDVLLDEFAQN-----DYDSVSINRITERAGIAKGSFYQYFADKK 58 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHS-----CGGGCCHHHHHHHHTCCTTGGGGTCSSHH
T ss_pred hHHHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHhCCcHHHHHHHcCCHH
Confidence 4455555555 34443 34567899999999999999999998853
No 181
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=51.84 E-value=4.4 Score=28.61 Aligned_cols=36 Identities=6% Similarity=0.019 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 90 MRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 90 Le~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
..+.|.+.| .+...++++|++.||++.+|-..|.|+
T Consensus 21 a~~l~~~~G-----~~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 21 SLDLFIEKG-----YYNTSIRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp HHHHHHHHC-----TTTCCHHHHHHHHCSCHHHHHHHCSSH
T ss_pred HHHHHHHcC-----cccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 334455543 456789999999999999999999875
No 182
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=51.10 E-value=3.5 Score=29.00 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=27.9
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 91 RRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 91 e~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+.|.+.| .+...+.++|++.||++.+|-..|.|+-
T Consensus 24 ~~l~~~~G-----~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 24 VDVFSDRG-----FHETSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp HHHHHHHC-----TTTCCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred HHHHHHcC-----cccccHHHHHHHhCCchHHHHHHhCCHH
Confidence 33555544 4567899999999999999999998763
No 183
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=50.77 E-value=9.6 Score=26.64 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 105 DEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 105 d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...++++|+..||++.+|-..|.|+-
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 778999999999999999999998853
No 184
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.66 E-value=1.6 Score=32.45 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
+++.|++.|.-.+- ..-..+++|..+||++.+|+.+++.-+.+++
T Consensus 188 L~~~~r~vl~l~~~---------~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 188 LPEREKLVIQLIFY---------EELPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp SCHHHHHHHHHHHT---------SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh---------cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 56666666665431 1225678999999999999999987666554
No 185
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=50.66 E-value=4.7 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 85 EQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 85 eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+-++++.+-|.++=+. +..+...++++|++.||++.+|-..|.|+-
T Consensus 24 ~~r~~Il~aA~~lf~e-~G~~~~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 24 ELVASILEAAVQVLAS-EGAQRFTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp HHHHHHHHHHHHC-------CCCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHh-hCcccccHHHHHHHhCCCCchHHHhCCCHH
Confidence 4455555544443111 224567899999999999999999998754
No 186
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=50.47 E-value=12 Score=24.69 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 81 KITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.+|++|++++.+.|...-= .--+.+..+...+-..+|++...++-+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4689999999998865310 01135568888888889999888776664
No 187
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=49.83 E-value=14 Score=25.83 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 83 TEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 83 T~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
|.|||+++-+.+. +.|++-+|.++..|+|-|.-
T Consensus 14 T~EQKralaeE~T--------------~if~evLGcpPgsV~IVi~E 46 (72)
T 3mb2_B 14 DRTRKQAFAAEAS--------------AIFQRVIGTPPGRLQLIIQI 46 (72)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHCCCTTCCEEEEEE
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhCCCCCcEEEEEEe
Confidence 5899988766654 46999999999999998864
No 188
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=49.76 E-value=7.8 Score=24.65 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|..+.+
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 57899999999999999998763
No 189
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.74 E-value=5.7 Score=28.72 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCCccCCHHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 77 TKRTKITEEQ-KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 77 R~RTkFT~eQ-kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
|.|...|.++ ++.-.+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 4 rr~~~~tr~~Il~AA~~lf~~~G-----~~~~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 4 RRYSSTSPERLAAALFDVAAESG-----LEGASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp -----CHHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccccchhHHHHHHHHHHHHHHhC-----hhhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3444445444 344444555544 4567899999999999999999998753
No 190
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=49.70 E-value=7.8 Score=27.74 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 89 KMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 89 kLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.-.+.|.+.| .+...++++|.+.||++.+|-..|.|+-
T Consensus 38 aA~~l~~~~G-----~~~~t~~~IA~~aGvs~~t~Y~~F~sK~ 75 (222)
T 3bru_A 38 AGLEHLTEKG-----YSSVGVDEILKAARVPKGSFYHYFRNKA 75 (222)
T ss_dssp HHHHHHHHSC-----TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHcC-----CCcCcHHHHHHHhCCCcchhhhhCCCHH
Confidence 3344555533 5667899999999999999999998853
No 191
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=49.65 E-value=5.4 Score=27.77 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.-.+.|.+.| .+...++++|++.||++.+|-..|.|+.
T Consensus 19 ~aA~~lf~~~G-----~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 57 (199)
T 3on2_A 19 ARAESTLEKDG-----VDGLSLRQLAREAGVSHAAPSKHFRDRQ 57 (199)
T ss_dssp HHHHHHHHHHC-----GGGCCHHHHHHHTC-----CCCSSSSHH
T ss_pred HHHHHHHHhcC-----hhhhhHHHHHHHhCCChHHHHHHhCCHH
Confidence 33344555543 4566889999999999999999998753
No 192
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=49.64 E-value=5.9 Score=27.84 Aligned_cols=40 Identities=3% Similarity=0.032 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+.| .+...+.++|++.||++.+|-..|.|+-
T Consensus 22 l~aa~~l~~~~G-----~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 22 RAAAIEVFAAKG-----YGATTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHC-----STTCCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred HHHHHHHHHHcC-----CCcCCHHHHHHHhCCCcChhhhcCCCHH
Confidence 344444555544 4566899999999999999999998763
No 193
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=49.45 E-value=19 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
-.|.|||++|-+-. -+.++..+|+++..+-|-|+-.
T Consensus 13 grs~eqK~~l~~~l--------------t~~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIEGV--------------SDLMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHHHH--------------HHHHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHHHCcCcccEEEEEEEe
Confidence 57899999987744 3457888999999988877654
No 194
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=49.35 E-value=11 Score=25.22 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=27.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC-------CCccchhhhhcc
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG-------ITRKMFKVWLNN 129 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG-------l~r~VvKVWFqN 129 (159)
..++|+++++.+.++.+.. ...+..++.....+.| ++..+|.-|++.
T Consensus 73 ~~~l~~~~~~~i~~~~~~~----~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 73 PRIATPEIENRIEEYKRSS----PGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCSSCSTHHHHHHHTTTTC----TTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCcCCHHHHHHHHHHHHhC----cchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 3578888888888876442 2234333332222227 488899999874
No 195
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=49.32 E-value=12 Score=24.80 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 82 ITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
+|++|++++.+.|...-= .-.+.+..+...+-..+|++...++.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678899999887765410 01246678888888889999888876664
No 196
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=49.30 E-value=9.2 Score=27.23 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+. ..+...++++|++.||++.+|=..|.|+-
T Consensus 19 l~aa~~lf~~~-----G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 58 (195)
T 2iu5_A 19 AKAFKDLMQSN-----AYHQISVSDIMQTAKIRRQTFYNYFQNQE 58 (195)
T ss_dssp HHHHHHHHHHS-----CGGGCCHHHHHHHHTSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHhC-----CCCeeCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33344455553 34567899999999999999999998753
No 197
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=49.29 E-value=7.3 Score=27.58 Aligned_cols=27 Identities=0% Similarity=0.052 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...++++|++.||++.+|-..|.|+
T Consensus 44 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK 70 (217)
T 3mvp_A 44 YFNVTTNEIAKKADVSVGTLYAYFASK 70 (217)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred ccccCHHHHHHHhCCChhHHHHHcCCH
Confidence 556789999999999999999999875
No 198
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=49.26 E-value=7.9 Score=24.60 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||+..+|.-|..+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 47899999999999999998753
No 199
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=48.69 E-value=34 Score=22.12 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=32.7
Q ss_pred CccCCHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhCCCccchhhh
Q 044959 79 RTKITEEQKSKMRRFADKLGWK-PQRHDEEEVGKFCGEVGITRKMFKVW 126 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~-iq~~d~~~r~efc~eiGl~r~VvKVW 126 (159)
||.||.|.=+.|.++..+..=. ........-++|++ ..++.++.+-|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~-~~~~~HtwqSw 49 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK-SSLTQHSWQSL 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH-SCSSSCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH-hHCCCCCHHHH
Confidence 8999999999999988775100 01113466777777 23788888877
No 200
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=48.69 E-value=40 Score=26.57 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHH-HHHHhCCCCCCCCH-HHHHHHHHHhCCCccc
Q 044959 81 KITEEQKSKMRR-FADKLGWKPQRHDE-EEVGKFCGEVGITRKM 122 (159)
Q Consensus 81 kFT~eQkekLe~-ffek~GW~iq~~d~-~~r~efc~eiGl~r~V 122 (159)
.||.+++.+||. ....++|++..+.. .=+..|+..++++..+
T Consensus 125 ~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 168 (257)
T 1g3n_C 125 SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH 168 (257)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTT
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhH
Confidence 589999999999 88999999999884 6788899999988764
No 201
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=48.40 E-value=4.1 Score=30.59 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 64 ~~~~t~~~IA~~aGvs~~t~Y~~F~sKe 91 (245)
T 3aqt_A 64 VDNVGIAEITEGANIGTGTFYNYFPDRE 91 (245)
T ss_dssp GGGCCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred cccCcHHHHHHHhCCChHHHHHHcCCHH
Confidence 4567889999999999999999998864
No 202
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=47.83 E-value=21 Score=21.63 Aligned_cols=22 Identities=0% Similarity=-0.079 Sum_probs=17.5
Q ss_pred HHHHHHHhC--CCccchhhhhccc
Q 044959 109 VGKFCGEVG--ITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiG--l~r~VvKVWFqNr 130 (159)
.++||..+| |++.+|.-|..+.
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 467888888 8888888888764
No 203
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.52 E-value=64 Score=22.45 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=30.7
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHhCCCccch
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHD---EEEVGKFCGEVGITRKMF 123 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d---~~~r~efc~eiGl~r~Vv 123 (159)
+.-..+||+-|+.+|+.. |-....|+ ++++.+|+. |+|++.+|
T Consensus 23 ~kG~R~Fs~iql~RL~kL----GI~ktdP~~LT~eEi~~FaR-LdIDP~TI 68 (71)
T 2eo2_A 23 VNGVREFSEIQLSRLKKL----GIHKTDPSTLTEEEVRKFAR-LNIDPATI 68 (71)
T ss_dssp SSSSCCCCHHHHHHHHHH----TCCCCSTTTCCHHHHHHHHH-TCCCSTTC
T ss_pred CCCeeecCHHHHHHHHHc----CCCCCCcccCCHHHHhhcee-cccCccce
Confidence 335568999999998765 42223344 799999985 78887775
No 204
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=47.18 E-value=5.2 Score=28.94 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.+|+.+.+.|.-+++- . ..+++|..++++.++|++-..|=+.|+.-
T Consensus 142 ~Lt~rE~~vl~~l~~g-------~---s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 142 SLTGREQQVLQLTIRG-------L---MNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp TSCHHHHHHHHHHTTT-------C---CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHcC-------C---cHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 4677777766655421 2 34678999999999999999999988864
No 205
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=46.99 E-value=23 Score=22.92 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=29.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGI 118 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl 118 (159)
..+++.|..||+|+-+.|.+..++.| .. .-..+|..+++
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G----~~---~W~~Ia~~~~~ 42 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYG----EG---NWSKILLHYKF 42 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHC----SS---CHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC----CC---cHHHHHHHcCc
Confidence 34678899999999999999998876 11 34666777764
No 206
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=46.96 E-value=5.3 Score=30.07 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 90 MRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 90 Le~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-.+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 32 A~~lf~~~G-----~~~~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 32 ARELGTERG-----IREITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp HHHHHHHHC-----STTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHhCC-----cccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 344555544 4567889999999999999999998753
No 207
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=46.95 E-value=15 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|-.++
T Consensus 37 q~elA~~~gis~~~is~~E~G~ 58 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKR 58 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3567777777777777777654
No 208
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=46.85 E-value=9.1 Score=26.50 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 15 l~aa~~l~~~~G-----~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 15 LETALQLFVSQG-----FHGTSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp HHHHHHHHHHTC-----STTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcC-----cccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 344455555543 4567899999999999999999998764
No 209
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=46.83 E-value=35 Score=21.01 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=34.1
Q ss_pred CCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 044959 78 KRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGI--TRKMFKVWLN 128 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl--~r~VvKVWFq 128 (159)
....||++|++.|...|...-- .-.+.+..+...+...+|+ +...+..+|.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3457899999999998876420 0113567888888888874 4445555554
No 210
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=46.48 E-value=6.4 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCccchhhhhc
Q 044959 108 EVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFq 128 (159)
.+.++|+.+||+.++|+.|-.
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 367899999999999999965
No 211
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=46.44 E-value=8.2 Score=28.99 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=34.5
Q ss_pred CCCCCCccCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 74 KAKTKRTKITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 74 ~kKR~RTkFT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++++.|...|.+++ +...+.|.+.| .+...+.++|.++||++.+|-..|.|+-
T Consensus 17 ~~~~~r~~~tr~~Il~aA~~l~~~~G-----~~~~s~~~IA~~aGvs~~tlY~~F~~K~ 70 (211)
T 3fiw_A 17 LYFQGMTKMNRETVITEALDLLDEVG-----LDGVSTRRLAKRLGVEQPSLYWYFRTKR 70 (211)
T ss_dssp -------CCCHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHHTSCTHHHHTTCSSHH
T ss_pred CCcccccccCHHHHHHHHHHHHHhcC-----cccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 35566677777764 34445555544 4566789999999999999999998753
No 212
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=46.41 E-value=9.4 Score=24.63 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCccchhhhhcc
Q 044959 109 VGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqN 129 (159)
.++||..+||++.+|.-|..+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 478999999999999999987
No 213
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=46.17 E-value=5.2 Score=27.77 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 84 EEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 84 ~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
++.++++.++.+. ++.+.-.++++|..+||++..|.-.|..
T Consensus 6 ~~~~~~~~~~i~~-----~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 6 PNMRTRVCTVINN-----NIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCHHHHHHHHHHT-----STTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4456677777666 3444557899999999999999988853
No 214
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=45.92 E-value=4.8 Score=29.86 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 89 KMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 89 kLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
...+.|.+. ..+...++++|++.||++.+|--.|.|+-
T Consensus 47 AA~~lf~e~-----G~~~~tv~~IA~~AGvs~~tlY~~F~sKe 84 (214)
T 2guh_A 47 AAGRAFATR-----PYREITLKDIAEDAGVSAPLIIKYFGSKE 84 (214)
T ss_dssp HHHHHHHHS-----CGGGCCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred HHHHHHHHc-----ChhhcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344455553 35567899999999999999999998753
No 215
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=45.80 E-value=27 Score=21.69 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=30.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhC-CCccchhhhhc
Q 044959 80 TKITEEQKSKMRRFADKLGWK-PQRHDEEEVGKFCGEVG-ITRKMFKVWLN 128 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~-iq~~d~~~r~efc~eiG-l~r~VvKVWFq 128 (159)
..+|++|.++|...|...--. --+.+..+...+...+| ++...++.+|.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999988664200 11355778888888777 55555665554
No 216
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=45.25 E-value=9.5 Score=29.52 Aligned_cols=52 Identities=8% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCCCCccCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 75 AKTKRTKITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 75 kKR~RTkFT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+..|...|.+++ +.-.+.|.+.| .+...+.++|+++||++.+|-..|.|+-
T Consensus 12 ~r~~r~~~tr~~Il~AA~~l~~e~G-----~~~~S~~~IA~~aGvs~~tlY~hF~sK~ 64 (243)
T 2g7l_A 12 DRPAKPALSRRWIVDTAVALMRAEG-----LEKVTMRRLAQELDTGPASLYVYVANTA 64 (243)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHC-----SSSCCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHhcC-----chhcCHHHHHHHHCCChhHHHHHcCCHH
Confidence 3445566777764 34445666654 4566789999999999999999998853
No 217
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=45.18 E-value=24 Score=22.28 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCccchhhhhcc
Q 044959 109 VGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqN 129 (159)
+.+.|..|||++.+|.-|+..
T Consensus 35 ~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 568899999999999998853
No 218
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=45.17 E-value=21 Score=23.19 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+|.||+++|-+.. -+.+.+.+|++...+-|-|+..
T Consensus 11 rls~eqk~~L~~~l--------------~~~l~~~lgip~~~v~V~i~e~ 46 (76)
T 1gyx_A 11 ELDEQQKAALAADI--------------TDVIIRHLNSKDSSISIALQQI 46 (76)
T ss_dssp CCCHHHHHHHHHHH--------------HHHHHHHHTCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHHhCcCCceEEEEEEEe
Confidence 36899998876644 3457888999999888877644
No 219
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=45.15 E-value=3.2 Score=29.56 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 103 RHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 103 ~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+...++++|.+.||++.+|-..|.|+-
T Consensus 36 G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 36 GYQETSLSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp CTTTCCHHHHHHHHTTSCCSSSCSCCSHH
T ss_pred ChhhCCHHHHHHHhCCCHHHHHHhcCCHH
Confidence 35667899999999999999999997753
No 220
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=44.92 E-value=6.5 Score=27.18 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 86 QKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-++++.+.|.++=+. +..+...+.++|++.||++.+|=..|.|+-
T Consensus 13 tr~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 57 (177)
T 3kkc_A 13 TKVAIYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYESKE 57 (177)
T ss_dssp HHHHHHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCSSTH
T ss_pred HHHHHHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcCCHH
Confidence 344444444443111 234577899999999999999999888753
No 221
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=44.79 E-value=6.3 Score=27.47 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...+.|.+.| .+...+.++|++.||++.+|-..|.|+-
T Consensus 17 ~aa~~lf~~~G-----~~~~t~~~IA~~agvs~~tlY~~F~sK~ 55 (197)
T 3rd3_A 17 DTGYRIMAVKG-----FSGVGLNEILQSAGVPKGSFYHYFKSKE 55 (197)
T ss_dssp HHHHHHHHHHC-----STTCCHHHHHHHHTCCHHHHTTTCSCHH
T ss_pred HHHHHHHHHCC-----cccCCHHHHHHHhCCChhhHHHHcCCHH
Confidence 33444555544 4566789999999999999999998764
No 222
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=44.73 E-value=4.5 Score=30.36 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=7.3
Q ss_pred chhhhhccc
Q 044959 122 MFKVWLNNN 130 (159)
Q Consensus 122 VvKVWFqNr 130 (159)
-|||||||-
T Consensus 53 dvkvwmqnl 61 (127)
T 2jpf_A 53 DVKVWMQNL 61 (127)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 489999983
No 223
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=44.45 E-value=41 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHHH-HHHHhCCCCCCCCH-HHHHHHHHHhCCCccc
Q 044959 80 TKITEEQKSKMRR-FADKLGWKPQRHDE-EEVGKFCGEVGITRKM 122 (159)
Q Consensus 80 TkFT~eQkekLe~-ffek~GW~iq~~d~-~~r~efc~eiGl~r~V 122 (159)
-.||.+++.+||. ..+.++|++..++. .=+..|+..++++..+
T Consensus 130 ~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~ 174 (271)
T 2w96_A 130 NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEEN 174 (271)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchH
Confidence 3699999999999 88999999999884 6778899999988654
No 224
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=44.02 E-value=9.9 Score=25.97 Aligned_cols=40 Identities=8% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 85 EQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 85 eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
+.++++.++-+. ++.+.-.++++|..+||+++.|.-.|.-
T Consensus 7 ~~i~~~~~~i~~-----~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 7 PKLTEAVSLMEA-----NIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHHHT-----CSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----hhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455666666665 3444467899999999999988877753
No 225
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=43.91 E-value=11 Score=26.69 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCC
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
++.-.+.|.+. ..+...++++|++.||++.+|-..|.|+-.-+.
T Consensus 13 l~aA~~l~~~~-----G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~ 56 (195)
T 2dg7_A 13 KRAALELYSEH-----GYDNVTVTDIAERAGLTRRSYFRYFPDKREVLF 56 (195)
T ss_dssp HHHHHHHHHHS-----CGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGT
T ss_pred HHHHHHHHHhc-----CccccCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 34444455553 355678999999999999999999998766554
No 226
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=43.72 E-value=7 Score=28.62 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=42.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC---CCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG---ITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG---l~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++..| ..-..+++|..++ ++.++|++...|=|.|+.-
T Consensus 144 ~~Lt~rE~~vl~~l~~~~~------~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAENAG------KVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCCHHHHHHHHHHHHTTT------SCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred EecCHHHHHHHHHHHHCCC------ceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 4599999999988886532 2236788999999 9999999999999999874
No 227
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=43.42 E-value=10 Score=24.75 Aligned_cols=23 Identities=0% Similarity=0.055 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||+..+|.-|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 47899999999999999998754
No 228
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.34 E-value=10 Score=28.30 Aligned_cols=46 Identities=7% Similarity=0.133 Sum_probs=32.2
Q ss_pred CccCCHHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 79 RTKITEEQ-KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 79 RTkFT~eQ-kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
|...|.++ ++.-.+.|.+.| ...+.++|+++||++.+|-..|.|+-
T Consensus 8 ~~~~~r~~Il~aA~~l~~~~G-------~~s~~~IA~~aGvs~~tlY~hF~~K~ 54 (213)
T 2g7g_A 8 VARLDRERIAEAALELVDRDG-------DFRMPDLARHLNVQVSSIYHHAKGRA 54 (213)
T ss_dssp ---CCHHHHHHHHHHHHHHHS-------SCCHHHHHHHTTSCHHHHHTTSCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcC-------CCCHHHHHHHhCCCHhHHHHHcCCHH
Confidence 44566655 344455666655 56789999999999999999998754
No 229
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=42.82 E-value=40 Score=22.71 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=36.0
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWK--PQRHDEEEVGKFCGEVGI--TRKMFKVWLN 128 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~--iq~~d~~~r~efc~eiGl--~r~VvKVWFq 128 (159)
++.-+.||++|+++|...|...-=. -.+.+..+...+...+|+ +...++.+|.
T Consensus 6 ~~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455779999999999987664210 124677888888888874 5555665554
No 230
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=42.71 E-value=0.58 Score=33.92 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.6
Q ss_pred HHHHHHhCCCccchhhhhccccCCCC
Q 044959 110 GKFCGEVGITRKMFKVWLNNNRRRPV 135 (159)
Q Consensus 110 ~efc~eiGl~r~VvKVWFqNrR~k~k 135 (159)
+++|..+|+++.+|+.+++.-|.+++
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46889999999999999987766554
No 231
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=42.26 E-value=17 Score=25.88 Aligned_cols=37 Identities=8% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 89 KMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 89 kLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
...+.|.+.| -+...++++|++.||++.+|=..|.|+
T Consensus 22 aA~~lf~~~G-----~~~~s~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 22 RAAAMFARQG-----YSETSIGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHTC-----TTTSCHHHHHHHTTCCGGGGTTTCSCH
T ss_pred HHHHHHHHcC-----cccCCHHHHHHHhCCCcCeeeeeeCCH
Confidence 3344555533 566789999999999999999999875
No 232
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=42.22 E-value=11 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCccchhhhhccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNr 130 (159)
..++||..+||++.+|.-|..+.
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 36789999999999999999884
No 233
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=42.00 E-value=12 Score=25.19 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 86 QKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.++++.++-+.. +.+.-.++++|..+||++..|.-.|..
T Consensus 3 ~i~~~~~~i~~~-----~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 3 AVRQVEEYIEAN-----WMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHH-----TTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----ccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 355566665553 333357889999999999988877764
No 234
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=41.86 E-value=12 Score=25.86 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 103 RHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 103 ~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+...++++|++.||++.+|--.|.|+-
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (188)
T 3qkx_A 25 GLNQLSMLKLAKEANVAAGTIYLYFKNKD 53 (188)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHSSSHH
T ss_pred CcccCCHHHHHHHhCCCcchHHHHcCCHH
Confidence 35667899999999999999999998753
No 235
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.71 E-value=16 Score=26.36 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| -+...++++|++.||++.+|=..|.|+-
T Consensus 17 l~aA~~lF~~~G-----y~~ts~~~IA~~aGvsk~tlY~~F~sKe 56 (202)
T 2i10_A 17 LQTAMELFWRQG-----YEGTSITDLTKALGINPPSLYAAFGSKR 56 (202)
T ss_dssp HHHHHHHHHHHT-----TTTCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred HHHHHHHHHHhC-----cccCCHHHHHHHhCCChHHHHHHhCCHH
Confidence 344444555544 4567899999999999999999997753
No 236
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1; alpha-beta motif, substrate-binding cleft; HET: A3P CIT; 1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Probab=41.63 E-value=47 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGIT 119 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~ 119 (159)
+.+.+..+++|++++|.+++.. ..+.|.+-||.+
T Consensus 233 ~~~~~~~l~~e~~~~L~~~~~~-----------~~~~L~~l~g~~ 266 (271)
T 1t8t_A 233 KGRTHPEIDREVVRRLREFYRP-----------FNLKFYQMTGHD 266 (271)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCcC
Confidence 3567789999999999999965 678888888875
No 237
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=41.30 E-value=6.6 Score=29.22 Aligned_cols=28 Identities=4% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...+.++|++.||++..|-..|.|+-
T Consensus 34 ~~~~s~~~IA~~agvs~~t~Y~~F~~K~ 61 (216)
T 2oi8_A 34 ASALSLNAIAKRMGMSGPALYRYFDGRD 61 (216)
T ss_dssp TTSCCHHHHHHHTTCCHHHHHTTCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4556789999999999999999998753
No 238
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=41.16 E-value=7.8 Score=28.98 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=41.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHh-----CCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEV-----GITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~ei-----Gl~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++..| + .-..+++++++ +++.++|++...|=|.|+..
T Consensus 152 ~~LT~rE~~vL~~l~~~~~---~---~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPR---Q---VFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTT---C---CBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred cccCHHHHHHHHHHHHCCC---c---eecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 4699999999998887632 1 23577888999 99999999999999999874
No 239
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=40.82 E-value=22 Score=25.89 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=29.9
Q ss_pred CccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCc
Q 044959 79 RTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGITR 120 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~r 120 (159)
++.||++|++.|.+.|...-- .--+.+..+...+-..+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 578999999999997765310 012467788888888888654
No 240
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=40.66 E-value=11 Score=29.05 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.2
Q ss_pred CCCCccCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 76 KTKRTKITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 76 KR~RTkFT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.|...|.+++ +.-.+.|.+. ..+...+.++|.++||++..|-..|.|+-
T Consensus 23 ~~~~~~~tr~~Il~aA~~l~~~~-----G~~~~s~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 23 MAGRRRWSTEQILDAAAELLLAG-----DAETFSVRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp -----CCCHHHHHHHHHHHHSSS-----SCCCCCHHHHHHHTTSCHHHHHHHTSSHH
T ss_pred CCcchhhHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHhCcCHHHHHHHcCCHH
Confidence 344556676653 3344455443 35567889999999999999999998853
No 241
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=40.62 E-value=14 Score=26.42 Aligned_cols=35 Identities=6% Similarity=0.006 Sum_probs=27.5
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 91 RRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 91 e~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+.|.+.| | ...++++|++.||++.+|-..|.|+-
T Consensus 23 ~~lf~~~G----~--~~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 23 YDTFAAEG----L--GVPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHTC----T--TSCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHhcC----C--CCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 33555555 4 36899999999999999999998853
No 242
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=40.52 E-value=29 Score=21.08 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.|.||+++|-+-. -+.+++.+|+++..|-|-|+..
T Consensus 12 ~s~eqk~~l~~~l--------------t~~l~~~lg~~~~~v~V~i~e~ 46 (64)
T 3abf_A 12 RPPEKKRELVRRL--------------TEMASRLLGEPYEEVRVILYEV 46 (64)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHTTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCCCcccEEEEEEEc
Confidence 5889998876643 3457888999999988877654
No 243
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=40.50 E-value=41 Score=22.97 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=33.4
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCC--ccchhhhh
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGIT--RKMFKVWL 127 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~--r~VvKVWF 127 (159)
..+.+..||++|++.|...|...-= .-.+.+..+...+...+|+. ...++..|
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4677899999999999998876520 01246678888888888864 34444433
No 244
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=40.14 E-value=11 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 83 TEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 83 T~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
+.+.-+++.++...+| .-+.....+||.+|||++..|+-.+..
T Consensus 8 ~~~~~~~IL~~L~~~~----pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 8 YQDQEQRILKFLEELG----EGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHHHHC----TTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcC----CCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4455566667766642 123457789999999999999877654
No 245
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=40.09 E-value=13 Score=24.85 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|-.+.+
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 57899999999999999987653
No 246
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=40.05 E-value=11 Score=23.79 Aligned_cols=20 Identities=15% Similarity=0.332 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCccchhhhh
Q 044959 108 EVGKFCGEVGITRKMFKVWL 127 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWF 127 (159)
...+||..+||++..|--|.
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 45789999999999999998
No 247
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=40.03 E-value=13 Score=26.30 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=32.3
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.+.++|.+.|..+-..... ....+.++|...||++.+|.-|..-
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~--------g~~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIH--------GLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHT--------TSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHc--------CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3445999987766554432 2335779999999999999999753
No 248
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=39.94 E-value=29 Score=29.65 Aligned_cols=44 Identities=7% Similarity=0.152 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHH---------HHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 81 KITEEQKSKMRRFA---------DKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 81 kFT~eQkekLe~ff---------ek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.+|.+|+++.+.-+ ...|+ .-...++++|.++||++++|.-|+.
T Consensus 22 ~l~~~~~~~A~~r~~~i~~v~~l~~~g~----~~~~a~~~~a~~~gvS~~Tl~rW~~ 74 (529)
T 4fcy_A 22 NASDSQRRLAEKWLPAVQAADEMLNQGI----STKTAFATVAGHYQVSASTLRDKYY 74 (529)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46777777644322 22232 2246789999999999999999974
No 249
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=39.92 E-value=13 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|
T Consensus 12 l~aa~~l~~~~G-----~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 12 LHTASRLSQLQG-----YHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHcC-----ccccCHHHHHHHHCCCchhHHHHccc
Confidence 444555565644 45668899999999999999999987
No 250
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=39.82 E-value=6.8 Score=27.71 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk 136 (159)
.+++.|++.+.-.+--. ....-..+++|..+||++.+|+...+.-..+++.
T Consensus 19 ~Lp~reR~Vi~Lry~l~-----~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGID-----MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35677777776644110 0123467899999999999999999887777764
No 251
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=39.82 E-value=9.9 Score=26.73 Aligned_cols=43 Identities=5% Similarity=0.045 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
-..+.++++.++-+.. +.+.-.++++|..+||++..|.--|..
T Consensus 8 ~~~~~i~~~~~~i~~~-----~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 8 TDAITIHSILDWIEDN-----LESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp -CHHHHHHHHHHHHTT-----TTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHc-----cCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3556677777777663 444468899999999999988777653
No 252
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=39.73 E-value=12 Score=25.37 Aligned_cols=23 Identities=0% Similarity=0.154 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+||..+||++.+|.-|-.+.+
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998754
No 253
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=39.72 E-value=9.7 Score=26.53 Aligned_cols=39 Identities=5% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 14 ~aa~~l~~~~G-----~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 52 (199)
T 3qbm_A 14 AQAAALFNVSG-----YAGTAISDIMAATGLEKGGIYRHFESKE 52 (199)
T ss_dssp HHHHHHHHHHC-----STTCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHhC-----cCcCCHHHHHHHhCCCccHHHHhCCCHH
Confidence 33344555543 5566889999999999999999998753
No 254
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=39.43 E-value=27 Score=26.51 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=21.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQR 103 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~ 103 (159)
-.||.||+..++..-++.|+.|..
T Consensus 132 ~~fseeql~~~~~~l~~~g~~~~~ 155 (159)
T 1p2x_A 132 LSFTDEDVSIIVRRLRQSNVILPN 155 (159)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCC
Confidence 389999999999999999988754
No 255
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=39.38 E-value=14 Score=25.79 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 86 QKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
=++.-.+.|.+.| .+ ..++++|++.||++.+|-..|.|+-
T Consensus 14 Il~aA~~lf~~~G-----~~-~t~~~IA~~aGvs~~tly~~F~sK~ 53 (190)
T 3jsj_A 14 LLEAAAALTYRDG-----VG-IGVEALCKAAGVSKRSMYQLFESKD 53 (190)
T ss_dssp HHHHHHHHHHHHC-----TT-CCHHHHHHHHTCCHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHhC-----cc-ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3444455555554 34 7899999999999999999998763
No 256
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=39.30 E-value=1.7 Score=31.60 Aligned_cols=49 Identities=2% Similarity=-0.074 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCCCCCCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRRPVPVR 138 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~ 138 (159)
.+++.|++.+.- .|...-..+++|..+||+..+|++.++.-|.++++.-
T Consensus 93 ~Lp~~~r~vl~L---------~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALLL---------TAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TSCTTHHHHHTT---------TSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHH---------HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 466777766543 3444456789999999999999999999888887643
No 257
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=39.27 E-value=6.8 Score=28.78 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=39.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC-----CCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG-----ITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG-----l~r~VvKVWFqNrR~k~kk 136 (159)
..+|+-+.+.|.-+++-.| + .-..+++++.++ ++.++|++...|=|.|+..
T Consensus 158 ~~Lt~rE~~vL~~l~~g~~---~---~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 158 VDLTKREFDLLAVLAEHKT---A---VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCCHHHHHHHHHHHHTTT---C---CBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred eccCHHHHHHHHHHHhCCC---C---eEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 4599999999988886632 2 235667888887 9999999999999988864
No 258
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=39.22 E-value=11 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCccchhhhhc
Q 044959 109 VGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFq 128 (159)
+.++|..+||+.++|+.|-.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 67899999999999999975
No 259
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=39.16 E-value=5.4 Score=29.16 Aligned_cols=51 Identities=6% Similarity=0.076 Sum_probs=41.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC-----CCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG-----ITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG-----l~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++-.| ..-..+++++.++ ++.++|++...|=|.|+.-
T Consensus 150 ~~Lt~rE~~vL~~l~~~~~------~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 150 IDLTKKEYQILEYLVMNKN------RVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp ECCCHHHHHHHHHHHHTTT------SCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred EecCHHHHHHHHHHHhCCC------cccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 4599999999988886532 2235688999998 9999999999999988864
No 260
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=39.09 E-value=14 Score=26.46 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 85 EQKSKMRRFADKLGWK-PQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 85 eQkekLe~ffek~GW~-iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+-++++.+-|.++= . -+..+...+.++|.+.||++.+|-..|.|+-
T Consensus 11 ~~r~~Il~aa~~l~-~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK~ 57 (220)
T 3lsj_A 11 QTRHALMSAARHLM-ESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMD 57 (220)
T ss_dssp HHHHHHHHHHHHHT-TTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHH
T ss_pred hHHHHHHHHHHHHH-HhCCCcccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 33445555444441 1 1234678899999999999999999998853
No 261
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=39.05 E-value=13 Score=26.36 Aligned_cols=39 Identities=3% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
++...+.|.+.| .+...++++|++.||++.+|-.+|.|+
T Consensus 10 l~aa~~l~~~~G-----~~~~t~~~Ia~~agvs~~t~Y~~F~sK 48 (185)
T 2yve_A 10 LRTAIDYIGEYS-----LETLSYDSLAEATGLSKSGLIYHFPSR 48 (185)
T ss_dssp HHHHHHHHHHSC-----STTCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcC-----hhhccHHHHHHHhCCChHHHHHhCcCH
Confidence 445555566644 456789999999999999999999875
No 262
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=38.83 E-value=5 Score=28.47 Aligned_cols=28 Identities=4% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 36 ~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 36 FHGTRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred cchhhHHHHHHHHCCChhHHHHhCCCHH
Confidence 4566799999999999999999998853
No 263
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=38.76 E-value=5.8 Score=28.55 Aligned_cols=27 Identities=7% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...++++|++.||++.+|-..|.|+
T Consensus 41 ~~~~t~~~IA~~agvs~~t~Y~~F~sK 67 (214)
T 2zb9_A 41 TAQLTFERVARVSGVSKTTLYKWWPSK 67 (214)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCCCH
Confidence 456689999999999999999999875
No 264
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=38.57 E-value=50 Score=20.42 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=35.2
Q ss_pred CCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCC--ccc---hhhhhc
Q 044959 78 KRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGIT--RKM---FKVWLN 128 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~--r~V---vKVWFq 128 (159)
....+|++|+++|...|...-- .-.+.+..+...+...+|.. ... ++.+|.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3456899999999997765310 01257788999999998854 445 666665
No 265
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=38.53 E-value=12 Score=25.22 Aligned_cols=39 Identities=3% Similarity=0.031 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 86 QKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.++++.++.+.. +.+.-.++++|..+||++..|.-.|..
T Consensus 6 ~i~~~~~~i~~~-----~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 6 IIQNVLSYITEH-----FSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHH-----TTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345566666553 334457889999999999988877753
No 266
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=38.47 E-value=13 Score=22.77 Aligned_cols=23 Identities=4% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCccchhhhhccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+.++|..+||+...|--|..+.
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 46789999999999999999554
No 267
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=38.38 E-value=40 Score=26.50 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHH-HHHHhCCCCCCCCH-HHHHHHHHHhCCCccc
Q 044959 80 TKITEEQKSKMRR-FADKLGWKPQRHDE-EEVGKFCGEVGITRKM 122 (159)
Q Consensus 80 TkFT~eQkekLe~-ffek~GW~iq~~d~-~~r~efc~eiGl~r~V 122 (159)
-.||.+++.+||. ....++|++..++. .=+..|+..++++...
T Consensus 125 ~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 169 (254)
T 2f2c_A 125 DCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDL 169 (254)
T ss_dssp --CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGG
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhh
Confidence 3689999999999 88999999999884 5678899999988764
No 268
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.35 E-value=3.9 Score=30.20 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 58 ~~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 85 (225)
T 2id3_A 58 FDALDLGEIARRAGVGKTTVYRRWGTPG 85 (225)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 4567899999999999999999998753
No 269
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=38.12 E-value=42 Score=23.24 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.+|++|++++.+.|...-=.--+.+..++..+-..+|++...+...|.
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 478999999988776542022346778888888888998888776553
No 270
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=37.43 E-value=15 Score=24.33 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCccchhhhhcc
Q 044959 109 VGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqN 129 (159)
..+||..+||++.+|.-|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 478999999999999999987
No 271
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=37.38 E-value=33 Score=23.19 Aligned_cols=35 Identities=6% Similarity=-0.020 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 86 QKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
+++.+....++.||. +.+.|+.|||++.+|..++.
T Consensus 52 E~~~i~~aL~~~~gn--------~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 52 ERTLLTTALRHTQGH--------KQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHTTTC--------TTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------HHHHHHHHCcCHHHHHHHHH
Confidence 334444444554443 34789999999999988774
No 272
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=37.32 E-value=70 Score=21.92 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHH----HHHHHhCCCc-cchhhhhcc
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVG----KFCGEVGITR-KMFKVWLNN 129 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~----efc~eiGl~r-~VvKVWFqN 129 (159)
..||.|+..++++=+.|.......-.+--.++...++ +|+.++|++. ..=.-|+++
T Consensus 65 ~~kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~ 125 (131)
T 1hlv_A 65 CRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDR 125 (131)
T ss_dssp TCCCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHH
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4678888888988788888776653332446766665 4566677753 222456655
No 273
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=37.26 E-value=25 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHhCCCcc
Q 044959 104 HDEEEVGKFCGEVGITRK 121 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~ 121 (159)
|+...+..||..+||+..
T Consensus 45 p~~~~l~~la~~l~v~~~ 62 (98)
T 3lfp_A 45 PDFEMANRLAKVLKIPVS 62 (98)
T ss_dssp CCHHHHHHHHHHHTSCGG
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 555555555555555543
No 274
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=37.11 E-value=8.4 Score=26.83 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.-.+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 15 ~aa~~l~~~~G-----~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 15 EVATELFAQKG-----FYGVSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp HHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred HHHHHHHhcCC-----cccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33444555543 5567899999999999999999998763
No 275
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=37.08 E-value=92 Score=20.77 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=36.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCC--Cccchhhhh
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGI--TRKMFKVWL 127 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl--~r~VvKVWF 127 (159)
....++.+|++|++.|...|...-- .-.+.+..+...+...+|+ +...++..|
T Consensus 10 ~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 10 SGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4456788999999999998876521 1124667888888888875 444455444
No 276
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=36.94 E-value=12 Score=26.33 Aligned_cols=39 Identities=8% Similarity=0.149 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...+.|.+.| .+...++++|.+.||++.+|-..|.|+.
T Consensus 23 ~aa~~lf~~~G-----~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 23 QTASNIMREGD-----VVDISLSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp HHHHHHHHHHT-----SSCCCHHHHHHHHCCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHcC-----cccccHHHHHHHhCCChhhHhHhcCCHH
Confidence 44445555554 4456789999999999999999998853
No 277
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=36.76 E-value=84 Score=20.62 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=27.1
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHhCCC
Q 044959 80 TKITEEQKSKMRRFADKLG-WKPQRHDEEEVGKFCGEVGIT 119 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~G-W~iq~~d~~~r~efc~eiGl~ 119 (159)
+.||++|++.|...|...- =.-.+.+..+...+...+|+.
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 43 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYM 43 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 4689999999988665530 012357778888887777653
No 278
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=36.74 E-value=22 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCccchhhhhccccC
Q 044959 106 EEEVGKFCGEVGITRKMFKVWLNNNRR 132 (159)
Q Consensus 106 ~~~r~efc~eiGl~r~VvKVWFqNrR~ 132 (159)
.+..+.+|.++|++...++.|.=.+|+
T Consensus 69 ~~~~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 69 AEFVQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHHHHhCCCcccEEEEEeecCC
Confidence 345788999999999999999766654
No 279
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=36.69 E-value=10 Score=27.86 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=31.0
Q ss_pred CccCCHHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 79 RTKITEEQ-KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 79 RTkFT~eQ-kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+..-|.++ ++.-.+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 27 ~~~~~r~~Il~aA~~lf~~~G-----~~~~s~~~IA~~aGvs~~tlY~~F~sK~ 75 (226)
T 2pz9_A 27 STDSTRQRIVAAAKEEFARHG-----IAGARVDRIAKQARTSKERVYAYFRSKE 75 (226)
T ss_dssp ---CCHHHHHHHHHHHHHHHH-----HHHCCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred chhHHHHHHHHHHHHHHHHhC-----cccCcHHHHHHHHCCChHHHHHHcCCHH
Confidence 34444443 333344444433 3456899999999999999999998753
No 280
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=36.51 E-value=13 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCccchhhhhcc
Q 044959 109 VGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqN 129 (159)
+.++|..+||+.++|+.|-..
T Consensus 4 i~e~A~~~gvs~~tLR~ye~~ 24 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDDI 24 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 578999999999999999764
No 281
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=36.39 E-value=15 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+||..+||++.+|.-|..+.+
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 67899999999999999998754
No 282
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=36.38 E-value=44 Score=22.51 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=28.8
Q ss_pred ccCCHHHHHHHHHHHHHhC--CCCCCCCHHHHHHHHHHhCCC--ccchhhhh
Q 044959 80 TKITEEQKSKMRRFADKLG--WKPQRHDEEEVGKFCGEVGIT--RKMFKVWL 127 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~G--W~iq~~d~~~r~efc~eiGl~--r~VvKVWF 127 (159)
+.||++|+..|...|...- =.-.+.+..+...+...+|+. ...++..|
T Consensus 5 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 56 (158)
T 2jnf_A 5 SKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLI 56 (158)
T ss_dssp TTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4688889888888776541 011235567777777776643 33344444
No 283
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate biosynthesis, substrate specificity, glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Probab=36.31 E-value=51 Score=25.81 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=27.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGIT 119 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~ 119 (159)
+.|.+..++++++++|.+||.. ..++|.+-||.+
T Consensus 243 k~~~~~~l~~~~~~~L~~~f~p-----------~~~~L~~llg~~ 276 (280)
T 3bd9_A 243 KGRIHPEVDPSVITKLRKFFHP-----------FNQKFYQITGRT 276 (280)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHSCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCCC
Confidence 3456789999999999999965 788899888865
No 284
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=36.17 E-value=18 Score=24.40 Aligned_cols=39 Identities=3% Similarity=0.082 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHhCCCccchhhhhcc
Q 044959 86 QKSKMRRFADKLGWKPQRH-DEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 86 QkekLe~ffek~GW~iq~~-d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.++++.++-+.. +. ..-.++++|..+||++..|.--|..
T Consensus 4 ~i~~~~~~i~~~-----~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 4 RVREACQYISDH-----LADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHHT-----SSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666663 44 4557889999999999988776653
No 285
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=36.12 E-value=13 Score=25.93 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|+
T Consensus 8 l~aa~~l~~~~G-----~~~~ti~~Ia~~agvs~~t~Y~~F~sK 46 (194)
T 3bqz_B 8 LGVAKELFIKNG-----YNATTTGEIVKLSESSKGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHHHHHHT-----TTTCCHHHHHHHTTCCHHHHHHHTSSH
T ss_pred HHHHHHHHHHcC-----CccCCHHHHHHHhCCCchhHHHhCCCH
Confidence 455555565654 455678999999999999999999875
No 286
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=36.11 E-value=16 Score=24.39 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+||..+||++.+|.-|..+.+
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 67899999999999999998754
No 287
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=35.96 E-value=12 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|.+.||++.+|-..|.|+-
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 32 VSATSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCceeehhhcCCHH
Confidence 4566889999999999999999998753
No 288
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=35.82 E-value=13 Score=26.41 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 26 ~~~~t~~~IA~~agvs~~tlY~~F~sK~ 53 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLYRNFPDRF 53 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4567899999999999999999998853
No 289
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=35.63 E-value=23 Score=25.77 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.1
Q ss_pred ccCCHHHHHHHHHHHHH
Q 044959 80 TKITEEQKSKMRRFADK 96 (159)
Q Consensus 80 TkFT~eQkekLe~ffek 96 (159)
..+|+||++++.+.|++
T Consensus 89 ~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 89 NILTPEQKKQFNANFEK 105 (108)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 46899999999998877
No 290
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=35.58 E-value=82 Score=25.32 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHH-HHHHhCCCCCCCCH-HHHHHHHHHhCCCcc
Q 044959 81 KITEEQKSKMRR-FADKLGWKPQRHDE-EEVGKFCGEVGITRK 121 (159)
Q Consensus 81 kFT~eQkekLe~-ffek~GW~iq~~d~-~~r~efc~eiGl~r~ 121 (159)
.||.+++.+||. ....++|++..++. .=+..|+..++++..
T Consensus 125 ~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~ 167 (283)
T 1w98_B 125 ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167 (283)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSS
T ss_pred CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCch
Confidence 589999999999 89999999999885 577889999988654
No 291
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=35.54 E-value=12 Score=26.37 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|.+.||++.+|-..|.|+-
T Consensus 32 ~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 59 (212)
T 3knw_A 32 FVGVGLQEILKTSGVPKGSFYHYFESKE 59 (212)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 5567889999999999999999998753
No 292
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=35.45 E-value=38 Score=20.29 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 83 TEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 83 T~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
|.|||++|-+.. -+.+.+.+|+++..+-|-|+..
T Consensus 12 s~e~k~~l~~~i--------------~~~l~~~lg~p~~~v~v~i~e~ 45 (62)
T 1otf_A 12 TDEQKETLIRQV--------------SEAMANSLDAPLERVRVLITEM 45 (62)
T ss_dssp CHHHHHHHHHHH--------------HHHHHHHHTCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhCcCcccEEEEEEEe
Confidence 789998876643 3457788999998888777643
No 293
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=35.35 E-value=52 Score=25.94 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHH-HHHHhCCCCCCCC-HHHHHHHHHHhCCCc
Q 044959 81 KITEEQKSKMRR-FADKLGWKPQRHD-EEEVGKFCGEVGITR 120 (159)
Q Consensus 81 kFT~eQkekLe~-ffek~GW~iq~~d-~~~r~efc~eiGl~r 120 (159)
.||.+++.+||. ....++|++..++ ..-+..|+..++++.
T Consensus 113 ~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~ 154 (260)
T 2cch_B 113 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN 154 (260)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC
T ss_pred CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh
Confidence 599999999999 7888999999988 477888999998875
No 294
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=35.15 E-value=17 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||+..+|.-|..+.+
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998754
No 295
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=35.03 E-value=74 Score=19.86 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=35.8
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhCCC--ccchhhhhc
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWK-PQRHDEEEVGKFCGEVGIT--RKMFKVWLN 128 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~-iq~~d~~~r~efc~eiGl~--r~VvKVWFq 128 (159)
.+....+|+++++.|...|...--. --+.+..++..+...+|++ ...++.+|.
T Consensus 8 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 8 AEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp CSHHHHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455579999999999988654200 1136678888888888854 555666553
No 296
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=34.93 E-value=13 Score=26.61 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCccchhhhhcccc
Q 044959 107 EEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 107 ~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..++++|+..||++.+|-..|-|+-
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~sK~ 56 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFGSKE 56 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred ccHHHHHHHhCCCHHHHHHhcCCHH
Confidence 7899999999999999999998864
No 297
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=34.80 E-value=15 Score=24.25 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCccchhhhhc
Q 044959 108 EVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFq 128 (159)
..++||..+||++.+|.-|..
T Consensus 24 T~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 24 SLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp CHHHHHHHHSSCHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 357899999999999999965
No 298
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=34.79 E-value=14 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
|+++|.+..+...... .. +...+.+++..+|+++..+.-|+.
T Consensus 1 ~~~~~~~l~~~i~~~~----~~-~p~~~~~la~~~~~~~~~~~~~l~ 42 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLF----GD-EPWWVRDLAKETGTDEQAMRLTLR 42 (121)
T ss_dssp CCHHHHHHHHHHGGGC----SS-SCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----Hh-CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 5677776666665553 11 333667899999999999988875
No 299
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=34.54 E-value=59 Score=25.87 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHH-HHHHhCCCCCCCCH-HHHHHHHHHhCCCccch
Q 044959 81 KITEEQKSKMRR-FADKLGWKPQRHDE-EEVGKFCGEVGITRKMF 123 (159)
Q Consensus 81 kFT~eQkekLe~-ffek~GW~iq~~d~-~~r~efc~eiGl~r~Vv 123 (159)
.||.+++.+||. ..+.++|++..++. .=+..|+..++++..+.
T Consensus 112 ~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~ 156 (269)
T 2b9r_A 112 TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQH 156 (269)
T ss_dssp SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHH
Confidence 589999999999 88889999999884 66778888888876543
No 300
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=34.32 E-value=18 Score=24.62 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|-.+.+
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 57899999999999999998753
No 301
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=34.26 E-value=13 Score=26.31 Aligned_cols=36 Identities=6% Similarity=0.139 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 90 MRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 90 Le~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-.+.|.+.| | ...++++|++.||++.+|-..|.|+-
T Consensus 25 A~~lf~~~G----~--~~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 25 AAAEVARHG----A--DASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHG----G--GCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHhcC----C--CCCHHHHHHHhCCchHHHHHHCCCHH
Confidence 334555555 5 36899999999999999999998753
No 302
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=34.05 E-value=51 Score=20.69 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=28.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
....-+++.+....++.| .+.+.|..|||++.+|.-++.
T Consensus 17 ~l~~~Er~~I~~aL~~~g---------n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEYP---------STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHSC---------SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---------CHHHHHHHhCCCHHHHHHHHH
Confidence 344556666666665532 356889999999999988875
No 303
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=34.03 E-value=14 Score=25.95 Aligned_cols=28 Identities=7% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 29 ~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 56 (203)
T 3b81_A 29 YENTTLAFIINKLGISKGALYHYFSSKE 56 (203)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred cccCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 4567889999999999999999998753
No 304
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=33.90 E-value=85 Score=25.14 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=35.7
Q ss_pred ccCCHHHHHHHHH-HHHHhCCCCCCCCH-HHHHHHHHHhCCCccc
Q 044959 80 TKITEEQKSKMRR-FADKLGWKPQRHDE-EEVGKFCGEVGITRKM 122 (159)
Q Consensus 80 TkFT~eQkekLe~-ffek~GW~iq~~d~-~~r~efc~eiGl~r~V 122 (159)
-.||.+|+.+||. .-..++|++..|.. .=+..|...++++...
T Consensus 122 ~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~ 166 (252)
T 1f5q_B 122 GATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRED 166 (252)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcch
Confidence 3699999999999 89999999999985 4567788888877543
No 305
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.72 E-value=18 Score=25.08 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|..+.+
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 47899999999999999998864
No 306
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP, haparin sulfate, haparin sulfate biosynthesis, glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP: c.37.1.5
Probab=33.65 E-value=30 Score=27.89 Aligned_cols=44 Identities=7% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
+.|.+..++++++++|.++|.. ..++|.+-||..-..+.-|..+
T Consensus 276 k~~~~~~l~~~~r~~L~~~~~~-----------~~~~L~~ll~~~g~~~~~W~~~ 319 (325)
T 1nst_A 276 KGRKYPEMDLDSRAFLKDYYRD-----------HNIELSKLLYKMGQTLPTWLRE 319 (325)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHHHHTCCCCHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHHhcCCCCcccchH
Confidence 4455678999999999999854 4555555443222355567643
No 307
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=33.56 E-value=18 Score=27.87 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=35.2
Q ss_pred CccCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 79 RTKITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 79 RTkFT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
|...|.+++ +.-.+.|.+.| .+...+.++|+++||++.+|-..|.|+-
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G-----~~~~S~r~IA~~aGvs~~tlY~hF~~K~ 51 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEG-----LDALSMRRLAQELKTGHASLYAHVGNRD 51 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred CCcCCHHHHHHHHHHHHHhCC-----ccccCHHHHHHHHCCChhHHHHHcCCHH
Confidence 445666664 45555666644 4566889999999999999999888764
No 308
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=33.49 E-value=41 Score=21.47 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.|.|||++|-+-. -+.++..+|+++..+-|-|+..
T Consensus 12 rs~eqK~~L~~~i--------------t~~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 12 RSTEQKAELARAL--------------SAAAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCCCcccEEEEEEEc
Confidence 5899999887744 3457888999998887766553
No 309
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=33.45 E-value=12 Score=26.70 Aligned_cols=39 Identities=8% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...+.|.+.| .+...++++|.+.||++.+|-..|.|+-
T Consensus 18 ~aA~~lf~~~G-----~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 18 NAAQKRFAHYG-----LCKTTMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp HHHHHHHHHHC-----SSSCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHcC-----CCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33444555544 4556789999999999999999998853
No 310
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=33.38 E-value=19 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...++++|++.||++.+|=..|.|+
T Consensus 30 ~~~~ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 30 FHEAKIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cccccHHHHHHHhCCChHHHHHHCCCH
Confidence 456689999999999999999888875
No 311
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=33.36 E-value=17 Score=25.17 Aligned_cols=23 Identities=0% Similarity=0.026 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46799999999999999998753
No 312
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=33.21 E-value=13 Score=26.45 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 15 l~aa~~l~~~~G-----~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 15 LAATLDLIAEEG-----IARVSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp HHHHHHHHHHHC-----GGGCCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred HHHHHHHHHHhC-----hhhccHHHHHHHhCCCchhhheeCCCHH
Confidence 344445555543 4567899999999999999999998754
No 313
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=33.14 E-value=22 Score=21.67 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.3
Q ss_pred CCCCccCCHHHHHHHHHHHHHhC
Q 044959 76 KTKRTKITEEQKSKMRRFADKLG 98 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~G 98 (159)
++....+|+++++.|++.|+..|
T Consensus 16 ~~i~vRlt~eE~~~l~~~A~~~g 38 (51)
T 2ba3_A 16 VVRTLRFSPVEDETIRKKAEDSG 38 (51)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHT
T ss_pred eeEEEEECHHHHHHHHHHHHHhC
Confidence 34455799999999999999986
No 314
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=32.98 E-value=68 Score=21.66 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=34.6
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 76 KTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 76 KR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.-.|..||+|+-+.|.+...+.| . . -..+|..+|=+..++|.-+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G---~--k---W~~IA~~lgRt~~q~knRw~ 64 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHG---N--D---WATIGAALGRSASSVKDRCR 64 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHS---S--C---HHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC---C--C---HHHHHHHhCCCHHHHHHHHH
Confidence 34567999999999999998876 2 2 56777777888888876554
No 315
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=32.82 E-value=45 Score=19.94 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 83 TEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 83 T~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
|.|||++|-+-. -+.+++.+|+++..+-|-|+..
T Consensus 12 s~eqk~~l~~~i--------------~~~l~~~lg~~~~~v~V~i~e~ 45 (61)
T 2opa_A 12 TDEQKRNLVEKV--------------TEAVKETTGASEEKIVVFIEEM 45 (61)
T ss_dssp CHHHHHHHHHHH--------------HHHHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhCcCcCeEEEEEEEc
Confidence 789998876643 3457888999999888877644
No 316
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=32.73 E-value=12 Score=25.85 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (194)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHHHFPSKS 53 (194)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCchHHHHHcCCHH
Confidence 4566899999999999999999998853
No 317
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=32.65 E-value=59 Score=21.88 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=28.0
Q ss_pred CCCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCC
Q 044959 77 TKRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGI 118 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl 118 (159)
..++.||++|++.|...|...-= .--+.+..+...+...+|+
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~ 47 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGR 47 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTS
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCC
Confidence 45788999999999998875410 0124667777777776664
No 318
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=32.44 E-value=12 Score=25.92 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 17 ~aa~~l~~~~G-----~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (196)
T 3col_A 17 DAVAAIILAEG-----PAGVSTTKVAKRVGIAQSNVYLYFKNKQ 55 (196)
T ss_dssp HHHHHHHHHHC-----GGGCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHhcC-----cccCCHHHHHHHhCCcHHHHHHHhCCHH
Confidence 33444555533 5567899999999999999999998853
No 319
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=32.44 E-value=12 Score=26.08 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 14 l~aa~~l~~~~G-----~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (183)
T 1zk8_A 14 VETAAEIADANG-----VQEVTLASLAQTLGVRSPSLYNHVKGLQ 53 (183)
T ss_dssp HHHHHHHHHHHC-----GGGCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHhcC-----ccccCHHHHHHHcCCCchHHHHHcCCHH
Confidence 344455555543 4567899999999999999999998753
No 320
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=32.16 E-value=82 Score=20.73 Aligned_cols=48 Identities=8% Similarity=0.185 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCC--ccchhhhhcc
Q 044959 82 ITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGIT--RKMFKVWLNN 129 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~--r~VvKVWFqN 129 (159)
||++|+++|...|...-= .--+.+..+...+-..+|+. ...++..|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 789999999998865310 01246788888888888764 3445544443
No 321
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=32.04 E-value=19 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-+...++++|++.||++.+|=..|.|+-
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (210)
T 2xdn_A 29 VARTTLADIAELAGVTRGAIYWHFNNKA 56 (210)
T ss_dssp STTCCHHHHHHHHTCCTTHHHHHCSSHH
T ss_pred cccCcHHHHHHHHCCChHHHHHHhCCHH
Confidence 4567889999999999999999998853
No 322
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=32.03 E-value=13 Score=25.65 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLIFYHFESKQ 49 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred CccCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 4567899999999999999999998753
No 323
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=31.91 E-value=20 Score=24.40 Aligned_cols=23 Identities=0% Similarity=0.068 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||++.+|.-|-.+.+
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 47899999999999999998764
No 324
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=31.71 E-value=7 Score=27.38 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...++++|.+.||++.+|-..|.|+
T Consensus 32 ~~~~t~~~IA~~agvs~~t~Y~~F~sK 58 (191)
T 4aci_A 32 YEGATVRRLEEATGKSRGAIFHHFGDK 58 (191)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred cccCCHHHHHHHHCCCchHHHHHCCCH
Confidence 456689999999999999999999875
No 325
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=31.41 E-value=23 Score=23.10 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||..+||+..+|.-|-.+.+
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 326
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=31.38 E-value=16 Score=25.67 Aligned_cols=41 Identities=7% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccC
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRR 132 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~ 132 (159)
++.-.+.|.+.| -+...++++|++.||++.+|=..|.|+-.
T Consensus 9 l~aA~~lf~~~G-----~~~~s~~~IA~~agvsk~t~Y~~F~sK~~ 49 (190)
T 3vpr_A 9 LEEAAKLFTEKG-----YEATSVQDLAQALGLSKAALYHHFGSKEE 49 (190)
T ss_dssp HHHHHHHHHHHC-----STTCCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC-----cccCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 334444455543 45567899999999999999999988654
No 327
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=31.31 E-value=17 Score=25.55 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 85 EQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 85 eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.=++.-.+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 11 ~Il~aA~~lf~~~G-----~~~~t~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 11 KIIDNAITLFSEKG-----YDGTTLDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp HHHHHHHHHHHHHC-----TTTCCHHHHHHHTTCCHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHcC-----cccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 33455555566654 4556789999999999999999998754
No 328
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=31.28 E-value=88 Score=20.93 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=29.8
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchh
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFK 124 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvK 124 (159)
.+..+|.|+.+.|+..-... ..-....-+.+|+.+|=+...|+
T Consensus 7 ~~~~WT~eE~k~fe~al~~~----p~~t~~RW~~IA~~lgRt~~eV~ 49 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKF----PGGTPGRWEKIAHELGRSVTDVT 49 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHS----CTTCTTHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC----CCCCCcHHHHHHHHhCCCHHHHH
Confidence 35589999999999977663 12224578889999974444444
No 329
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=31.22 E-value=21 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..+||..+||++.+|--|..+++
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 67899999999999999998765
No 330
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=31.15 E-value=13 Score=26.35 Aligned_cols=40 Identities=10% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 16 l~aa~~l~~~~G-----~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (216)
T 3s5r_A 16 LDAATTLFAEQG-----IAATTMAEIAASVGVNPAMIHYYFKTRD 55 (216)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHTTTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcC-----cccCCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 344444555543 4566899999999999999999998754
No 331
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=31.12 E-value=19 Score=26.36 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCccchhhhhcccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..++||+.+||+..+|.-|..+.+
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~ 45 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGA 45 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSS
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCC
Confidence 678999999999999999998644
No 332
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=30.91 E-value=48 Score=21.62 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.|.|||++|-+-. -+.+++.+|+++..+-|-|+-
T Consensus 12 rs~eqK~~L~~~i--------------t~~l~~~lg~p~~~v~V~i~E 45 (76)
T 3ej9_A 12 RTDEQKRALSAGL--------------LRVISEATGEPRENIFFVIRE 45 (76)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHCCCGGGCEEEEEE
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHHCcCcccEEEEEEE
Confidence 4899998876644 345788899999888775554
No 333
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.75 E-value=20 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.++|+.+||+..+|--++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998865
No 334
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=30.66 E-value=8.1 Score=26.75 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (195)
T 3pas_A 26 FSATSVGKIAKAAGLSPATLYIYYEDKE 53 (195)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred hHhcCHHHHHHHhCCCchHHHHHcCCHH
Confidence 3456899999999999999999998853
No 335
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=30.27 E-value=48 Score=24.28 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHhCCCccch
Q 044959 103 RHDEEEVGKFCGEVGITRKMF 123 (159)
Q Consensus 103 ~~d~~~r~efc~eiGl~r~Vv 123 (159)
.|+...+..||+.+||+...|
T Consensus 50 ~p~~~~l~~ia~~l~~~~~~l 70 (198)
T 2bnm_A 50 ELTLTQLGRIAHVLGTSIGAL 70 (198)
T ss_dssp TCBHHHHHHHHHHTTSCTGGG
T ss_pred CCCHHHHHHHHHHhCCCHHHE
Confidence 577888888888888875443
No 336
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.99 E-value=37 Score=24.36 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhCCC--ccchhh
Q 044959 80 TKITEEQKSKMRRFADKLGW---KPQRHDEEEVGKFCGEVGIT--RKMFKV 125 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW---~iq~~d~~~r~efc~eiGl~--r~VvKV 125 (159)
+.+|++|++.|++.|...-. .--+.+..+...+-+.||+. ...|+.
T Consensus 1 sqLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~ 51 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQ 51 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHH
Confidence 35899999999986653200 11256677888888888875 334443
No 337
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=29.91 E-value=11 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 26 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 53 (195)
T 3frq_A 26 PIEFTLSGVAKEVGLSRAALIQRFTNRD 53 (195)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4466899999999999999999998753
No 338
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=29.73 E-value=55 Score=20.25 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.|.|||++|-+-. -+.+.+.+|+++..+-|-|+-
T Consensus 11 rs~eqk~~L~~~i--------------t~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 11 RSPQEVAALGEAL--------------TAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHCCCGGGCEEEEEE
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCcCcccEEEEEEE
Confidence 4899999887644 345778899999887776653
No 339
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=29.68 E-value=20 Score=25.53 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 89 KMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 89 kLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.-.+.|.+.| -+...++++|.+.||++.+|=..|.|+-
T Consensus 17 aA~~lf~~~G-----~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe 54 (204)
T 3anp_C 17 AAMELFRNRG-----FQETTATEIAKAAHVSRGTFFNYYPYKE 54 (204)
T ss_dssp HHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHHHHCSSTH
T ss_pred HHHHHHHHcC-----cccccHHHHHHHcCCchHHHHHHcCCHH
Confidence 3344455544 4567899999999999999999998753
No 340
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=29.62 E-value=20 Score=26.17 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCccchhhhhcc
Q 044959 109 VGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqN 129 (159)
+.++|+.+||+.++|+.|-..
T Consensus 3 I~e~A~~~gvs~~tLR~ye~~ 23 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYEEK 23 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 578999999999999999664
No 341
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=29.49 E-value=81 Score=28.28 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHhCCC
Q 044959 77 TKRTKITEEQKSKMRRFADKLGWK-PQRHDEEEVGKFCGEVGIT 119 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek~GW~-iq~~d~~~r~efc~eiGl~ 119 (159)
-.+..||+||+++|++.|...--. --+.+..+...+-..+|+.
T Consensus 291 Ps~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~ 334 (440)
T 3u0k_A 291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 334 (440)
T ss_dssp CBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred hhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCC
Confidence 357899999999999988764200 1135677777777777764
No 342
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=29.37 E-value=1.1e+02 Score=22.85 Aligned_cols=42 Identities=10% Similarity=0.256 Sum_probs=33.8
Q ss_pred CCHHHHHHHHH-HHHHhCCCCCCCC-HHHHHHHHHHhCCCccch
Q 044959 82 ITEEQKSKMRR-FADKLGWKPQRHD-EEEVGKFCGEVGITRKMF 123 (159)
Q Consensus 82 FT~eQkekLe~-ffek~GW~iq~~d-~~~r~efc~eiGl~r~Vv 123 (159)
++..++.+++. ..+.+|+.+..++ ..-+..||+.+|++..+.
T Consensus 77 ~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~ 120 (207)
T 1c9b_A 77 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQ 120 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHH
Confidence 56777777776 6677999998865 688999999999998754
No 343
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=29.17 E-value=19 Score=25.20 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhh
Q 044959 84 EEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWL 127 (159)
Q Consensus 84 ~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWF 127 (159)
.+.++++..+-.+.| ....+||.+|||++..|.-=+
T Consensus 16 ~~~~~~IL~lL~~~g--------~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--------ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHHHHHSSST--------EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--------CCHHHHHHHHCcCHHHHHHHH
Confidence 567777777764432 778999999999998886443
No 344
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=29.03 E-value=11 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCccCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 77 TKRTKITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 77 R~RTkFT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.+..-|.+++ +.-.+.|.+.| .+...+.++|++.||++.+|-..|.|+-
T Consensus 13 ~~~~~~~r~~Il~AA~~lf~~~G-----~~~~t~~~IA~~aGvs~~tlY~~F~sKe 63 (251)
T 3npi_A 13 DDPTEVSTDTVLDIALSLFSELG-----FSDAKLEAIAKKSGMSKRMIHYHFGDKR 63 (251)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHH-----HHHCCHHHHHHHHCCCHHHHHHHHCSHH
T ss_pred CCCchHHHHHHHHHHHHHHHHcC-----ccccCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 33444444443 33344444433 4566899999999999999999998764
No 345
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=28.98 E-value=12 Score=28.18 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccCC
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRRR 133 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~k 133 (159)
++++++.+...+.. ....-+.++|..+||++.+|.-|+.+.+..
T Consensus 142 ~~~~~~~~~i~~l~---------~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 142 KLTKAEWEQAGRLL---------AQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHH---------HcCCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 46777766554433 233467889999999999999999887643
No 346
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=28.98 E-value=15 Score=25.36 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 16 l~aa~~l~~~~G-----~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 55 (191)
T 3on4_A 16 LAVAEALIQKDG-----YNAFSFKDIATAINIKTASIHYHFPSKE 55 (191)
T ss_dssp HHHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhC-----cccCCHHHHHHHhCCCcchhhhcCCCHH
Confidence 344444555543 5567899999999999999999998753
No 347
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=28.95 E-value=1.2e+02 Score=19.75 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCC--ccchhhhh
Q 044959 81 KITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGIT--RKMFKVWL 127 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~--r~VvKVWF 127 (159)
.||++|+++|...|...-- .-.+.+..+...+...+|+. ...+...|
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 50 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKIL 50 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3788888888887765310 11235667777777777653 44555555
No 348
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=28.84 E-value=1.3e+02 Score=20.19 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=33.9
Q ss_pred ccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCC--Cccchhhhhcc
Q 044959 80 TKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGI--TRKMFKVWLNN 129 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl--~r~VvKVWFqN 129 (159)
..||++|++.|...|...-= .-.+.+..+...+...+|+ +...++..|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 56899999999997766420 1124678888888888875 45567777753
No 349
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=28.83 E-value=25 Score=27.68 Aligned_cols=46 Identities=13% Similarity=0.266 Sum_probs=34.4
Q ss_pred cCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 81 KITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 81 kFT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..|.+++ +.-.+.|.+.| .+...+.++|+++||++.+|-..|.|+-
T Consensus 26 ~~tr~~Il~AA~~L~~e~G-----~~~~Smr~IA~~aGVs~~tlY~hF~~K~ 72 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEG-----VEAASMRRVAAELGAGTMSLYYYVPTKE 72 (267)
T ss_dssp EECHHHHHHHHHHHHHHHC-----TTTCCHHHHHHHHTCCHHHHHTTCCSHH
T ss_pred cccHHHHHHHHHHHHHhcC-----cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 6777764 34455666644 4566789999999999999999888764
No 350
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=28.83 E-value=1e+02 Score=20.92 Aligned_cols=50 Identities=6% Similarity=0.130 Sum_probs=35.1
Q ss_pred ccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCC---Cccchhhhhcc
Q 044959 80 TKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGI---TRKMFKVWLNN 129 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl---~r~VvKVWFqN 129 (159)
+.||++|++.|...|...-= .-.+.+..+...+...+|+ +...+...|.+
T Consensus 17 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 17 SMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 36899999999998865410 1124677888888888876 55567766654
No 351
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.59 E-value=21 Score=26.55 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCccchhhhhccccCCCCCC-CCCcccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNRRRPVPV-RVPEKCR 144 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR~k~kk~-~~~~~~~ 144 (159)
.+.++|..+||+.++|+.|-.. --+++. |.++.-+
T Consensus 6 tI~evA~~~Gvs~~tLR~ye~~--GLl~p~~r~~~g~R 41 (146)
T 3hh0_A 6 LISEFASVGDVTVRALRYYDKI--NLLKPSDYTEGGHR 41 (146)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHT--TSSCCSEECTTSCE
T ss_pred cHHHHHHHHCcCHHHHHHHHHC--CCCCCCeECCCCCE
Confidence 3678999999999999999766 334332 4444433
No 352
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=28.57 E-value=40 Score=25.28 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=29.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
..||+|||+.|-+-. -+.+++.+|+++.-|.|.|+--
T Consensus 10 ~~~t~eqK~aLa~~I--------------t~a~~e~~~vP~~~v~Vif~e~ 46 (149)
T 3mf7_A 10 DRLTPSAKHAVAKAI--------------TDAHRGLTGTQHFLAQVNFQEQ 46 (149)
T ss_dssp TTSCHHHHHHHHHHH--------------HHHHHHTCCTTCCCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHH--------------HHHHHHHHCcChHHEEEEEEEc
Confidence 468999998876644 3457788899999999999863
No 353
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=28.35 E-value=15 Score=25.59 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...+.++|.+.||++.+|-..|.|+-
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (156)
T 3ljl_A 32 YDKMSYTTLSQQTGVSRTGISHHFPKKT 59 (156)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred hhhcCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 4556899999999999999999998863
No 354
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=28.23 E-value=76 Score=19.69 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLG 98 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~G 98 (159)
....|..||+|+-+.|.++.++.|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Confidence 456678999999999999988865
No 355
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.20 E-value=21 Score=26.42 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCccchhhhhccccCCCCC-CCCCcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNRRRPVP-VRVPEKCR 144 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR~k~kk-~~~~~~~~ 144 (159)
+.++|..+||+.++|+.|-..- -+++ .|..+.-+
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~~G--Ll~p~~r~~~g~R 39 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYERIG--LIPPIHRNESGVR 39 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT--SSCCCCBCTTSCB
T ss_pred HHHHHHHHCcCHHHHHHHHHCC--CCCCCcCCCCCCe
Confidence 6789999999999999997663 3333 34444443
No 356
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=28.13 E-value=57 Score=23.11 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCccchhhhhccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNr 130 (159)
.++||..+||++.+|.-|..++
T Consensus 56 Q~eLA~~lGis~~~Is~iE~G~ 77 (120)
T 2o38_A 56 QAAAAARLGINQPKVSALRNYK 77 (120)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678888888888888887764
No 357
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=28.12 E-value=29 Score=24.05 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.-.+.|.+.| .+...++++|.+.||++.+|-..|.|+-
T Consensus 14 ~aA~~l~~~~G-----~~~~s~~~IA~~agvs~~tly~~F~sK~ 52 (180)
T 2fd5_A 14 GAATQALLERG-----AVEPSVGEVMGAAGLTVGGFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHHHHT-----TTSCCHHHHHHHTTCCGGGGGGTCSCHH
T ss_pred HHHHHHHHHhC-----cccCCHHHHHHHhCCCccHHHHHCCCHH
Confidence 33444455544 3456789999999999999999998753
No 358
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=28.01 E-value=52 Score=19.55 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=20.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLG 98 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~G 98 (159)
..+.-..++.+.+++|..+|+..|
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g 32 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKN 32 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHT
T ss_pred cceEEEEcCHHHHHHHHHHHHHhC
Confidence 346667789999999999999986
No 359
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=27.79 E-value=15 Score=23.85 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhh
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWL 127 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWF 127 (159)
..+|..|...|..+.... ..-.+.+||+.+||++.+|.-.+
T Consensus 17 ~~l~~~~~~~l~~l~~~~-------~~~t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVEIE-------KPITSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp HTCCHHHHHHHHHHHHHC-------SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC-------CCCCHHHHHHHHCcCHHHHHHHH
Confidence 357889999988877532 12357789999999998876544
No 360
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=27.72 E-value=17 Score=26.04 Aligned_cols=39 Identities=8% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.-.+.|.+.| .+...++++|.+.||++.+|-..|.|+-
T Consensus 22 ~aA~~lf~~~G-----~~~~s~~~IA~~agvs~~t~Y~~F~sKe 60 (221)
T 3c2b_A 22 DQALRLLVEGG-----EKALTTSGLARAANCSKESLYKWFGDRD 60 (221)
T ss_dssp HHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHhCC-----cccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 33344555544 4567899999999999999999998863
No 361
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=27.71 E-value=25 Score=21.23 Aligned_cols=28 Identities=36% Similarity=0.744 Sum_probs=19.7
Q ss_pred cccCccccccCCCCCCcccccccccc--ccccccccc
Q 044959 17 AYDGCGEFLKAGKDGTKEAFHCAACG--CHRSFHRKE 51 (159)
Q Consensus 17 ~~DgC~ef~~~~~~~~~~~l~CaaCg--cHRnFHr~~ 51 (159)
.=|=|++||- ..++|..|+ ||+--+.+.
T Consensus 16 ~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 16 FCDICQKFLL-------NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp ECTTSSSEEC-------SEEECTTTTCCBCSTTSSSS
T ss_pred CCCCcccccc-------cCCEeCCCCCeEChhHHhhC
Confidence 3467999986 468999985 666655544
No 362
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=27.69 E-value=98 Score=23.84 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHH-HHHHhCCCCCCCC-HHHHHHHHHHhCCCccchh
Q 044959 81 KITEEQKSKMRR-FADKLGWKPQRHD-EEEVGKFCGEVGITRKMFK 124 (159)
Q Consensus 81 kFT~eQkekLe~-ffek~GW~iq~~d-~~~r~efc~eiGl~r~VvK 124 (159)
.++.+++.+||. .-+.+||.+..++ ..-+..|++.++++..+.+
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~ 153 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLE 153 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHH
Confidence 578999999999 7788999999866 5778999999988876543
No 363
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=27.55 E-value=56 Score=23.92 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCc
Q 044959 85 EQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITR 120 (159)
Q Consensus 85 eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r 120 (159)
+-.++|.++.+..+=.+..++++++.++-++||++-
T Consensus 3 ~~ie~L~~~~~~~~~~~~~~t~e~I~~~E~~Lgi~f 38 (135)
T 2pag_A 3 EVIEQLREANEPVPVPLELPDEDQLVEIEEQLFINI 38 (135)
T ss_dssp HHHHHHHHHCCCCSSCCCCCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHCCCC
Confidence 446677777777665666788899999999998873
No 364
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=27.53 E-value=17 Score=25.84 Aligned_cols=28 Identities=7% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|-..|.|+-
T Consensus 29 ~~~~s~~~IA~~agvs~~t~Y~~F~sK~ 56 (212)
T 2ras_A 29 GAGLTLSELAARAGISQANLSRYFETRE 56 (212)
T ss_dssp SSCCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred cccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4456789999999999999999998864
No 365
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=27.36 E-value=24 Score=25.20 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.-.+.|.+.| .+...++++|++.||++.+|=..|.|+-
T Consensus 14 ~aA~~lf~~~G-----~~~ts~~~IA~~aGvs~gtlY~~F~sKe 52 (197)
T 2gen_A 14 QAALACFSEHG-----VDATTIEMIRDRSGASIGSLYHHFGNKE 52 (197)
T ss_dssp HHHHHHHHHHC-----TTTCCHHHHHHHHCCCHHHHHHHTCSHH
T ss_pred HHHHHHHHHcC-----cccCCHHHHHHHHCCChHHHHHHCCCHH
Confidence 33344455544 4567899999999999999999998753
No 366
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=27.34 E-value=28 Score=22.72 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCccchhhhhcccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+.++|..+||+..+|--|+.|+.
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCC
Confidence 478899999999999999998764
No 367
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=27.23 E-value=52 Score=30.81 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=29.5
Q ss_pred CCCccCCHHHHHHHHHHHHH------------------hCCCCCCC-----CHHHHHHHHHHhCCC
Q 044959 77 TKRTKITEEQKSKMRRFADK------------------LGWKPQRH-----DEEEVGKFCGEVGIT 119 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek------------------~GW~iq~~-----d~~~r~efc~eiGl~ 119 (159)
..|..||.+++.++.++... .|||+.|| +..++.+.|.+-||.
T Consensus 136 ~~r~~~s~~~ik~~id~ma~~KlN~~h~hl~Ddp~~~~~~wr~~yP~lt~~ei~elv~yA~~rgI~ 201 (716)
T 2cho_A 136 FYGTPWSHQARLSQLKFYGKNKMNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVD 201 (716)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCTTTSTTGGGSCCCHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEEEEeeccCcccccccccccCChhhHHHHHHHHHHHHHcCCE
Confidence 34556778887777774433 47888887 456777777777775
No 368
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.02 E-value=23 Score=26.23 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCccchhhhhcc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqN 129 (159)
.+.++|+.+||+.++|+.|-..
T Consensus 18 ~I~evA~~~gvs~~tLR~Ye~~ 39 (148)
T 3gpv_A 18 TIGQVAKMQHLTISQIRYYDKQ 39 (148)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHT
T ss_pred eHHHHHHHHCcCHHHHHHHHHC
Confidence 4789999999999999999654
No 369
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=27.02 E-value=27 Score=24.67 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=31.5
Q ss_pred CCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 82 ITEEQK-SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 82 FT~eQk-ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.|.+++ +.-.+.|.+.| .+...++++|.+.||++.+|-..|.|+-
T Consensus 7 ~tRe~Il~aA~~lf~~~G-----~~~~s~~~IA~~aGvs~~tlY~~F~sKe 52 (178)
T 4hku_A 7 LSQEIILNMAEKIIYEKG-----MEKTTLYDIASNLNVTHAALYKHYRNKE 52 (178)
T ss_dssp CCHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHHHHHHHHhC-----cccccHHHHHHHhCcCHhHHHHHCCCHH
Confidence 344443 33334444544 4567899999999999999999998764
No 370
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=26.95 E-value=33 Score=23.19 Aligned_cols=41 Identities=15% Similarity=0.414 Sum_probs=26.3
Q ss_pred ccCCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhCCCc
Q 044959 80 TKITEEQKSKMRRFADKLGW---KPQRHDEEEVGKFCGEVGITR 120 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW---~iq~~d~~~r~efc~eiGl~r 120 (159)
|.||++|+++|...|...-- .-.+.+..+...+...+|+..
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~ 44 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINP 44 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 56899999999987754310 122456677777777777643
No 371
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=26.92 E-value=28 Score=24.73 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
+.-.+.|.+.| -+...++++|.+.||++.+|=..|.|+-
T Consensus 19 ~aA~~lf~~~G-----~~~~s~~~IA~~aGvs~~tlY~~F~sKe 57 (197)
T 2hyt_A 19 ATARKVFSERG-----YADTSMDDLTAQASLTRGALYHHFGDKK 57 (197)
T ss_dssp HHHHHHHHHHC-----TTTCCHHHHHHHHTCCTTHHHHHHSSHH
T ss_pred HHHHHHHHHhC-----cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33344555544 4566789999999999999999998753
No 372
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=26.87 E-value=23 Score=25.30 Aligned_cols=28 Identities=0% Similarity=0.165 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|=..|.|+-
T Consensus 27 ~~~~s~~~IA~~aGvsk~tlY~~F~sKe 54 (203)
T 3cdl_A 27 FEITSMDRIAARAEVSKRTVYNHFPSKE 54 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHTTSSSHH
T ss_pred chhcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4566889999999999999999998753
No 373
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=26.83 E-value=12 Score=27.35 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=41.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHh-----CCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEV-----GITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~ei-----Gl~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++..| + .-..+++++.+ +++.++|++-..|=|.|+..
T Consensus 155 ~~Lt~rE~~vL~~l~~~~~---~---~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 155 ITLPLKEFDLLEYLMRNSG---R---VLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCCHHHHHHHHHHHHTTT---S---CEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred eecCHHHHHHHHHHHhCCC---c---eEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 5699999999998886532 1 23567889999 99999999999999988864
No 374
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=26.59 E-value=57 Score=22.35 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.|.||+++|-+.. -+.|.+.+|+++..+-|-|+..
T Consensus 68 ~~~eqk~~l~~~i--------------~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 1uiz_A 68 IGGPQNKSYTKLL--------------CDILTKQLNIPANRVYINYYDL 102 (115)
T ss_dssp CSHHHHHHHHHHH--------------HHHHHHHHCCCGGGEEEEEEEC
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCcCcceEEEEEEEC
Confidence 4699998876633 2457889999999999988764
No 375
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=26.57 E-value=78 Score=25.91 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=36.4
Q ss_pred ccCCHHHHHHHHH-HHHHhCCCCCCCCH-HHHHHHHHHhCCCccc
Q 044959 80 TKITEEQKSKMRR-FADKLGWKPQRHDE-EEVGKFCGEVGITRKM 122 (159)
Q Consensus 80 TkFT~eQkekLe~-ffek~GW~iq~~d~-~~r~efc~eiGl~r~V 122 (159)
-.||.+|+.+||. ....++|++..+.. .=+..|...++++...
T Consensus 144 ~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~ 188 (306)
T 3g33_B 144 HAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR 188 (306)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTT
T ss_pred cCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhH
Confidence 4699999999999 88999999999874 6778888888887553
No 376
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif, CO-FACT PAPS/PAP, heparan sulfate oligosaccharides, golgi-localized transferase; HET: A3P NGY BDP SGN IDS; 1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Probab=26.52 E-value=1.1e+02 Score=24.55 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGIT 119 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~ 119 (159)
+|.|.+..+++|.+++|.+||+. ..++|.+-||.+
T Consensus 231 skgr~~~~~~~~~r~~L~~~f~p-----------~n~~L~~llg~~ 265 (269)
T 3uan_A 231 SKGRAHPQVDPKLLDKLHEYFHE-----------PNKKFFKLVGRT 265 (269)
T ss_dssp TSSCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHTCC
T ss_pred ccCCcCCCCCHHHHHHHHHHHHH-----------HHHHHHHHhCcC
Confidence 46677899999999999999965 678888888876
No 377
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=26.40 E-value=27 Score=26.99 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 89 KMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 89 kLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
...+.|.+.| .+...++++|++.||++.+|-.+|.|+-
T Consensus 49 AA~~lf~e~G-----~~~~S~~~IA~~AGVs~~tlY~hF~sKe 86 (273)
T 3c07_A 49 TAMRLFQERG-----YDRTTMRAIAQEAGVSVGNAYYYFAGKE 86 (273)
T ss_dssp HHHHHHHHTC-----STTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHhCC-----ccccCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 3344555533 4566899999999999999999998754
No 378
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=26.36 E-value=9.2 Score=24.88 Aligned_cols=43 Identities=16% Similarity=0.444 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.|.|--.+|.+|..+. |-...+...+.|..|||....|.-.|.
T Consensus 4 wseeverklkefvrrh----qeitqetlheyaqklglnqqaieqffr 46 (52)
T 1y66_A 4 WSEEVERKLKEFVRRH----QEITQETLHEYAQKLGLNQQAIEQFFR 46 (52)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 3556666778887765 556678888999999998887776663
No 379
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=26.31 E-value=73 Score=25.16 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC---CCccchhhhhcccc
Q 044959 83 TEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG---ITRKMFKVWLNNNR 131 (159)
Q Consensus 83 T~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG---l~r~VvKVWFqNrR 131 (159)
+..++..+.-++-+.| ....+..+.|++.+| |++.+|.-|++.-+
T Consensus 7 ~~~~~R~~i~~~~~~G----~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~ 54 (345)
T 3hot_A 7 NKEQTRTVLIFCFHLK----KTAAESHRMLVEAFGEQVPTVKTCERWFQRFK 54 (345)
T ss_dssp CHHHHHHHHHHHHHTT----CCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcC----CCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence 3444444444444443 444567788899999 99999999998644
No 380
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=26.26 E-value=25 Score=25.10 Aligned_cols=41 Identities=10% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccccC
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNRR 132 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR~ 132 (159)
++.-.+.|.+.| -+...++++|++.||++.+|=..|.|+..
T Consensus 16 l~aA~~lf~~~G-----~~~~s~~~Ia~~Agvskgt~Y~yF~sKe~ 56 (197)
T 2f07_A 16 LQAAIEVISEKG-----LDKASISDIVKKAGTAQGTFYLYFSSKNA 56 (197)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHHHHCSSSTT
T ss_pred HHHHHHHHHHhC-----cccCCHHHHHHHhCCCchHHHHhCCCHHH
Confidence 444455555544 45668999999999999999999988643
No 381
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=26.16 E-value=4.3 Score=28.69 Aligned_cols=27 Identities=4% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...++++|++.||++.+|-..|.|+
T Consensus 36 ~~~~s~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 36 FHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHSSSH
T ss_pred cccCCHHHHHHHHCcCHHHHhhhCCCH
Confidence 445679999999999999999999885
No 382
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=26.06 E-value=21 Score=26.93 Aligned_cols=31 Identities=3% Similarity=0.066 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccccCCC
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNRRRP 134 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR~k~ 134 (159)
.+...++++|++.||++.+|-..|.|+-.-+
T Consensus 66 ~~~~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll 96 (260)
T 2of7_A 66 YEATTVEQIAERAEVSPSTVLRYFPTREDIV 96 (260)
T ss_dssp STTCCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred cccccHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 5566899999999999999999998865443
No 383
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=26.03 E-value=22 Score=25.39 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|++.||++.+|=..|.|+-
T Consensus 32 ~~~~s~~~IA~~agvs~~tlY~~F~sKe 59 (204)
T 2ibd_A 32 LRATTVRDIADAAGILSGSLYHHFDSKE 59 (204)
T ss_dssp STTCCHHHHHHHTTSCHHHHHHHCSCHH
T ss_pred chhcCHHHHHHHhCCCchhHHHhcCCHH
Confidence 4567899999999999999999998754
No 384
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.02 E-value=18 Score=26.21 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| -+...++++|++.||++.+|=..|.|+-
T Consensus 14 l~aA~~lf~~~G-----y~~~s~~~IA~~AGvs~gt~Y~yF~sKe 53 (206)
T 1vi0_A 14 IDAAVEVIAENG-----YHQSQVSKIAKQAGVADGTIYLYFKNKE 53 (206)
T ss_dssp HHHHHHHHHHHC-----GGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhC-----cccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 344445555544 4567899999999999999999998853
No 385
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=25.98 E-value=14 Score=21.99 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=10.9
Q ss_pred cccccccccccccc
Q 044959 33 KEAFHCAACGCHRS 46 (159)
Q Consensus 33 ~~~l~CaaCgcHRn 46 (159)
.-.|+|.|||-++.
T Consensus 19 ~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 19 VHLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEEETTTEEEE
T ss_pred cEEEEhhcCCCccc
Confidence 45689999997664
No 386
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=25.90 E-value=22 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.276 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-+...++++|++.||++.+|-..|.|+-
T Consensus 28 ~~~~s~~~IA~~aGvs~~t~Y~~F~sKe 55 (210)
T 3vib_A 28 IARTSLNEIAQAAGVTRDALYWHFKNKE 55 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHHCcCHHHHHHHCCCHH
Confidence 4566799999999999999999998864
No 387
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=25.86 E-value=60 Score=22.09 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.|.||+++|-+.. -+.|.+.+|++...+-|-|+..
T Consensus 67 ~~~eqk~~l~~~i--------------~~~l~~~lgi~~~~v~I~~~e~ 101 (113)
T 1hfo_A 67 IEPSRNRDHSAKL--------------FDHLNTKLGIPKNRMYIHFVNL 101 (113)
T ss_dssp CSHHHHHHHHHHH--------------HHHHHHHHCCCGGGEEEEEEEC
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCcCcCeEEEEEEEC
Confidence 3699998876633 2457889999999999888764
No 388
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=25.69 E-value=18 Score=25.79 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| .+...++++|++.||++.+|--.|.|+-
T Consensus 9 l~aA~~lf~~~G-----~~~~s~~~IA~~Agvs~~t~Y~~F~sK~ 48 (212)
T 3rh2_A 9 IQASLELFNEHG-----ERTITTNHIAAHLDISPGNLYYHFRNKE 48 (212)
T ss_dssp HHHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcC-----cccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 344444555543 4567889999999999999999998753
No 389
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=25.57 E-value=96 Score=21.60 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 81 KITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.+|.+++..|....+..| ..+..+++.+-+-+.+....++-.|.-
T Consensus 2 ~~t~~el~~li~~~~~~g----~l~~~e~~~i~~~~~l~~~~v~diM~~ 46 (156)
T 3oi8_A 2 NASAEDVLNLLRQAHEQE----VFDADTLLRLEKVLDFSDLEVRDAMIT 46 (156)
T ss_dssp CCCHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTTCBGGGTCEE
T ss_pred CCCHHHHHHHHHhHHhcC----CcCHHHHHHHHHHhccCCCCHhheeee
Confidence 479999999999888865 688889999988888988888888864
No 390
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=25.50 E-value=19 Score=27.47 Aligned_cols=16 Identities=25% Similarity=0.713 Sum_probs=12.5
Q ss_pred Cccccccccccccccc
Q 044959 32 TKEAFHCAACGCHRSF 47 (159)
Q Consensus 32 ~~~~l~CaaCgcHRnF 47 (159)
-.-.|+|.|||-++.-
T Consensus 120 r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 120 RISLLKCEACGAKAPL 135 (138)
T ss_dssp TTTEEECSTTSCCCCS
T ss_pred CeEEEEccCCCCCccc
Confidence 3457899999998764
No 391
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=25.47 E-value=12 Score=26.36 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...+.++|++.||++.+|-..|.|+-
T Consensus 32 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 59 (215)
T 3e7q_A 32 FQGASVRKICAEAGVSVGLINHHYDGKD 59 (215)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4566899999999999999999998753
No 392
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=25.17 E-value=60 Score=23.07 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=28.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
..++..+.+.+.......|. .+.++|.++|+++.+|+.++++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~--------~~~~ia~~l~is~~tv~~~l~~~~ 181 (184)
T 3rqi_A 138 LSVDRLEWEHIQRVLAENNN--------NISATARALNMHRRTLQRKLAKKP 181 (184)
T ss_dssp CC---CHHHHHHHHHHHTTS--------CHHHHHHHHTSCHHHHHHHHCC--
T ss_pred ccHHHHHHHHHHHHHHhccc--------cHHHHHHHcCCcHHHHHHHHHhcC
Confidence 34455556666666655431 367899999999999999988754
No 393
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=25.08 E-value=25 Score=25.43 Aligned_cols=28 Identities=4% Similarity=0.124 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|+..||++.+|=..|-|+-
T Consensus 40 ~~~~s~~~IA~~AGVsk~tlY~~F~sKe 67 (207)
T 3bjb_A 40 LARVQMHEVAKRAGVAIGTLYRYFPSKT 67 (207)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4567899999999999999999998753
No 394
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=25.06 E-value=65 Score=23.32 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhC
Q 044959 73 YKAKTKRTKITEEQKSKMRRFADKLG 98 (159)
Q Consensus 73 ~~kKR~RTkFT~eQkekLe~ffek~G 98 (159)
..++|.|..||.|.-+.|.+.-++.|
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G 32 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLG 32 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 35789999999999999999998876
No 395
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=24.99 E-value=64 Score=22.35 Aligned_cols=36 Identities=0% Similarity=-0.010 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.|.||+++|-+.. -+.|.+.+|+++..+-|-|+...
T Consensus 68 ~~~eqk~~l~~~i--------------~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 68 LSADDNIRHTQKI--------------TQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCcCcccEEEEEEECC
Confidence 4699998876633 24578899999999999887653
No 396
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=24.86 E-value=79 Score=23.52 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH----HhCCCccch
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCG----EVGITRKMF 123 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~----eiGl~r~Vv 123 (159)
.+++||..||+++-..|-.-|-.-.+-......+|=. -|.....|.
T Consensus 6 ~~~~~t~~qLqkkfkHa~DFGi~~t~~N~~t~~~fedaI~~Hi~~~~tv~ 55 (107)
T 1v74_A 6 DSGRFSRKQLDKKYKHAGDFGISDTKKNRETLTKFRDAIEEHLSDKDTVE 55 (107)
T ss_dssp CBTTBCHHHHHHHGGGGGGGTCCCCCCSHHHHHHHHHHHHHHHHCTTCEE
T ss_pred cCCcccHHHHHhHhcccccccccccccChhhHHHHHHHHHHHhcCCCeEe
Confidence 4789999999999998888876655555555544433 344444443
No 397
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=24.74 E-value=25 Score=22.39 Aligned_cols=23 Identities=4% Similarity=0.199 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCccchhhhhccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+.++|..+||++.+|--|+...
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHCC
Confidence 46788899999999999999865
No 398
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=24.68 E-value=64 Score=20.92 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGI 118 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl 118 (159)
..++|.+||+|+-+.|.+..++.| .. .-.++|..+++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G----~~---~W~~Ia~~~~~ 43 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYG----EG---NWAAISKNYPF 43 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHC----TT---CHHHHHHHSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC----CC---chHHHHhhcCC
Confidence 345667899999999999998876 11 24556666654
No 399
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=24.56 E-value=62 Score=21.92 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=31.4
Q ss_pred ccCCHHHHHHHHHHHHHh---CCCCCCCCHHHHHHHHHHhCCC--ccchhhhhc
Q 044959 80 TKITEEQKSKMRRFADKL---GWKPQRHDEEEVGKFCGEVGIT--RKMFKVWLN 128 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~---GW~iq~~d~~~r~efc~eiGl~--r~VvKVWFq 128 (159)
+.||++|+++|...|... -=.-.+.+..+...+...+|+. ...++-.|.
T Consensus 1 s~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~ 54 (159)
T 2ovk_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGG 54 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 468999999999977663 0011235567888888887764 344444443
No 400
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.35 E-value=45 Score=25.34 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=16.2
Q ss_pred CCCccCCHHHHHHHHHHHHH
Q 044959 77 TKRTKITEEQKSKMRRFADK 96 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek 96 (159)
..-..+|+||++++.+.+++
T Consensus 114 qiy~vLTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 114 QMYRLLTPEQQAVLNEKHQQ 133 (145)
T ss_dssp HHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHH
Confidence 34457999999999997766
No 401
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=24.23 E-value=27 Score=26.13 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCccchhhhhccccCCCCCCCCCccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNRRRPVPVRVPEKC 143 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR~k~kk~~~~~~~ 143 (159)
.+.++|..+||+.++|+.|-..- -+++.|.++..
T Consensus 13 ~i~e~A~~~gvs~~TLR~ye~~G--ll~p~r~~~g~ 46 (154)
T 2zhg_A 13 TPGEVAKRSGVAVSALHFYESKG--LITSIRNSGNQ 46 (154)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTT--SSCCEECTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHcC--CCCcccCCCCC
Confidence 57889999999999999997653 33344444443
No 402
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=24.21 E-value=13 Score=26.09 Aligned_cols=28 Identities=0% Similarity=0.057 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...+.++|++.||++.+|-..|.|+.
T Consensus 38 ~~~~t~~~Ia~~agvs~~t~Y~~F~~K~ 65 (203)
T 3mnl_A 38 YEAVQMRAVADRADVAVGTLYRYFPSKV 65 (203)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CccCCHHHHHHHcCCChhHHHHHcCCHH
Confidence 4456899999999999999999998853
No 403
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.21 E-value=24 Score=25.37 Aligned_cols=40 Identities=8% Similarity=0.132 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| .+...++++|++.||++.+|=..|-|+-
T Consensus 14 l~aA~~lf~~~G-----~~~~s~~~IA~~aGvs~~tiY~~F~sKe 53 (202)
T 2d6y_A 14 FEAAVAEFARHG-----IAGARIDRIAAEARANKQLIYAYYGNKG 53 (202)
T ss_dssp HHHHHHHHHHHT-----TTSCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHcC-----cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344444555544 4566789999999999999999998753
No 404
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=24.17 E-value=81 Score=21.93 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=34.1
Q ss_pred CccCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHh---CCCccchhhhhc
Q 044959 79 RTKITEEQKSKMRRFADKL-GWKPQRHDEEEVGKFCGEV---GITRKMFKVWLN 128 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~-GW~iq~~d~~~r~efc~ei---Gl~r~VvKVWFq 128 (159)
.|.||.++++.+...|... | -.+.+..+...+...+ +.+...++..|+
T Consensus 19 ~~~~~~~~i~~~f~~fd~~~~--~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~ 70 (190)
T 1g8i_A 19 KTYFTEKEVQQWYKGFIKDCP--SGQLDAAGFQKIYKQFFPFGDPTKFATFVFN 70 (190)
T ss_dssp TSSSCHHHHHHHHHHHHHHCT--TSEEEHHHHHHHHHHHCTTSCTHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCC--CCcCCHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 5689999999999988765 2 2357788888888877 555555555443
No 405
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=23.91 E-value=35 Score=22.71 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=20.9
Q ss_pred ccccCccccccCCCCCCccccccccc--cccccccccc
Q 044959 16 YAYDGCGEFLKAGKDGTKEAFHCAAC--GCHRSFHRKE 51 (159)
Q Consensus 16 ~~~DgC~ef~~~~~~~~~~~l~CaaC--gcHRnFHr~~ 51 (159)
..=|=|++|| . ...++|..| .||+-=+.+.
T Consensus 36 t~C~~C~~~l--~----~qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 36 GWCDLCGREV--L----RQALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CBCTTTSSBC--S----SCCEECTTSSCEECTGGGGGC
T ss_pred cchhhhhHHH--H----hCcCccCCCCCeechhhhccC
Confidence 3447799999 2 346999999 5777655544
No 406
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=23.88 E-value=1.2e+02 Score=17.93 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCC--ccchhhhhc
Q 044959 82 ITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGIT--RKMFKVWLN 128 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~--r~VvKVWFq 128 (159)
+|++|++.|...|...-- .--+.+..+...+...+|+. ...++.+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 578899999987766420 01135577888888888753 444555553
No 407
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=23.69 E-value=97 Score=20.76 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhC
Q 044959 75 AKTKRTKITEEQKSKMRRFADKLG 98 (159)
Q Consensus 75 kKR~RTkFT~eQkekLe~ffek~G 98 (159)
.-|.|-.||.|+.+.|.+-.++.|
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~G 27 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTMG 27 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHh
Confidence 356888999999999999998877
No 408
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=23.36 E-value=1.8e+02 Score=20.86 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=25.9
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccch
Q 044959 78 KRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMF 123 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~Vv 123 (159)
....+++.+...=+..|+.+ ...|.++|.+.||++.+|
T Consensus 9 ~~p~~~~~e~~~d~~l~~~L--------~~wR~~~A~~~~vP~y~I 46 (113)
T 2dgz_A 9 SQPVISAQEQETQIVLYGKL--------VEARQKHANKMDVPPAIL 46 (113)
T ss_dssp CCCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHTTCCHHHH
T ss_pred CCCccCccccchHHHHHHHH--------HHHHHHHHHHhCCCCCee
Confidence 34455655555445567666 578888999999888764
No 409
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=23.28 E-value=22 Score=25.80 Aligned_cols=40 Identities=8% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 11 l~aA~~lf~~~G-----~~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 50 (228)
T 3nnr_A 11 LLSSLELFNDKG-----ERNITTNHIAAHLAISPGNLYYHFRNKS 50 (228)
T ss_dssp HHHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhC-----hhhcCHHHHHHHhCCCCccchhcCCCHH
Confidence 444455555543 4567899999999999999999998753
No 410
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=23.19 E-value=1.4e+02 Score=20.72 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=33.1
Q ss_pred CccCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHhC---CCccchhhhh
Q 044959 79 RTKITEEQKSKMRRFADKL-GWKPQRHDEEEVGKFCGEVG---ITRKMFKVWL 127 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~-GW~iq~~d~~~r~efc~eiG---l~r~VvKVWF 127 (159)
.|.||.+|++.|...|... | -.+.+..+...+...++ .+...++..|
T Consensus 19 ~~~~~~~~i~~~~~~fd~~~~--~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f 69 (190)
T 1fpw_A 19 STYFDRREIQQWHKGFLRDCP--SGQLAREDFVKIYKQFFPFGSPEDFANHLF 69 (190)
T ss_dssp TCCSTHHHHHHHHHHHHHHCT--TCCEEHHHHHHHHHHHCTTSCCSHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHCC--CCcCcHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3689999999999988764 2 34678888888888874 3333444444
No 411
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=22.98 E-value=86 Score=23.27 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHH---HHHHhCCCCCCCCHHHHHHHHHHhCCC-ccchhhhhc
Q 044959 81 KITEEQKSKMRR---FADKLGWKPQRHDEEEVGKFCGEVGIT-RKMFKVWLN 128 (159)
Q Consensus 81 kFT~eQkekLe~---ffek~GW~iq~~d~~~r~efc~eiGl~-r~VvKVWFq 128 (159)
.+|+.|.+.++. +-++.|+. | ...+||+.+||+ ..+|.-|+.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~---p---s~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMP---P---TRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSC---C---CHHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCC---c---cHHHHHHHhCCCChHHHHHHHH
Confidence 478888765444 44454421 2 367899999999 899999975
No 412
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.90 E-value=28 Score=24.23 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.+...++++|.+.||++.+|-..|.|+.
T Consensus 26 ~~~~t~~~IA~~Agvs~~tly~~F~sK~ 53 (194)
T 3dpj_A 26 FAQTSFVDISAAVGISRGNFYYHFKTKD 53 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHHCCChHHHHHHcCCHH
Confidence 4566889999999999999999998764
No 413
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.85 E-value=88 Score=18.35 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNN 129 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqN 129 (159)
.|.||+++|-+-. -+.+++.+|+++..+-|-|+.
T Consensus 14 ~s~e~k~~l~~~l--------------~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 14 RSDEQLKNLVSEV--------------TDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHHHCCCGGGCEEEEEE
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCcCcccEEEEEEE
Confidence 3789998876644 345778889999888776653
No 414
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.68 E-value=56 Score=25.27 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHhCC-CccchhhhhccccCCC
Q 044959 104 HDEEEVGKFCGEVGI-TRKMFKVWLNNNRRRP 134 (159)
Q Consensus 104 ~d~~~r~efc~eiGl-~r~VvKVWFqNrR~k~ 134 (159)
+++++++.|-..|.= ....|-.||-|++.-.
T Consensus 59 Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~ 90 (152)
T 3iz6_M 59 LSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDY 90 (152)
T ss_dssp SCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSC
T ss_pred CCHHHHHHHHHHHHhhcccCcchhhhhhhccc
Confidence 445555555554431 1233557999987433
No 415
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=22.43 E-value=10 Score=27.76 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=41.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC-----CCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG-----ITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG-----l~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++..| ..-..+++++.++ ++.++|++-..|=|.|+..
T Consensus 142 ~~Lt~rE~~vL~~l~~~~~------~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 142 VEVKGKPFEVLTHLARHRD------QIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp ECCCSTTTHHHHHHHHTCS------EEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred EecCHHHHHHHHHHHhCCC------CcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 3589999999888886521 2236789999999 9999999999999999865
No 416
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=22.30 E-value=76 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=20.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQR 103 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~ 103 (159)
-.||.||+..+...+++.|+.|..
T Consensus 176 ~~Fseeql~~~n~~l~q~G~~~~~ 199 (203)
T 1p5s_A 176 LSFTDEDVSIIVRRLRQSNVILPN 199 (203)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCC
Confidence 459999999999999999988654
No 417
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=22.30 E-value=17 Score=26.26 Aligned_cols=38 Identities=3% Similarity=-0.039 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
+.-.+.|.+.| .+...++++|++.||++.+|=.-|.|+
T Consensus 19 ~aA~~l~~e~G-----~~~~s~~~IA~~agvs~~t~Y~hF~~K 56 (198)
T 3cjd_A 19 DLAEAQIEAEG-----LASLRARELARQADCAVGAIYTHFQDL 56 (198)
T ss_dssp HHHHHHHHHHC-----GGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHhCC-----hhhcCHHHHHHHhCCCccHHHHHhCCH
Confidence 33444455533 556789999999999999999988875
No 418
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=22.29 E-value=24 Score=26.93 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=39.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-----HhCCCccchhhhhccccCCCCC
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCG-----EVGITRKMFKVWLNNNRRRPVP 136 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~-----eiGl~r~VvKVWFqNrR~k~kk 136 (159)
..+|+.+.+.|.-+++..| +..+ .++++. +++++.++|++-..|=|.|+..
T Consensus 181 ~~LT~rE~evL~ll~~g~~---~~~s---~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 181 LRLSPKEFDILALLIRQPG---RVYS---RQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp ECCCHHHHHHHHHHHHSTT---CCCC---HHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred eecCHHHHHHHHHHHHCCC---ceEc---HHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 3599999999999997643 3344 444555 6889999999999998888864
No 419
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=22.29 E-value=36 Score=22.37 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCccchhhhhcccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
...++|+.|||+...|--|....|
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r 38 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGL 38 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcC
Confidence 578899999999999999996544
No 420
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=22.05 E-value=20 Score=27.31 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=7.4
Q ss_pred CCccccccccccccccc
Q 044959 31 GTKEAFHCAACGCHRSF 47 (159)
Q Consensus 31 ~~~~~l~CaaCgcHRnF 47 (159)
+-.-.|+|.|||-++.-
T Consensus 120 ~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 120 KKSWYIVCLACGAQTPV 136 (139)
T ss_dssp CSTTTSSCCC-------
T ss_pred CCeEEEEecCCCCCCcc
Confidence 34457899999988753
No 421
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=21.97 E-value=35 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCccchhhhhcccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-..++|..+|+++.+|.-|..|+|
T Consensus 160 s~~~Ia~~l~is~~tv~r~l~~~~ 183 (183)
T 1gdt_A 160 GASHISKTMNIARSTVYKVINESN 183 (183)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhhcC
Confidence 467889999999999999988765
No 422
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.96 E-value=1.2e+02 Score=19.40 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC-CCccchhh
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG-ITRKMFKV 125 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG-l~r~VvKV 125 (159)
...-.|-.||+|+-+.|.++.++.| .. .-..+|..|+ =+..+++-
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G----~~---~W~~Ia~~l~~Rt~~qcr~ 49 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG----KN---QWSRIASLLHRKSAKQCKA 49 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC----SS---CHHHHHHHSTTCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC----cC---CHHHHHHHhcCCCHHHHHH
Confidence 3455677999999999999998865 11 2456666665 34444443
No 423
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=21.93 E-value=29 Score=24.90 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++.-.+.|.+.| -+...++++|++.||++.+|=..|.|+-
T Consensus 17 l~aA~~lf~~~G-----~~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (219)
T 2w53_A 17 LDAAEACFHEHG-----VARTTLEMIGARAGYTRGAVYWHFKNKS 56 (219)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhC-----cccCCHHHHHHHhCCCchHHhhcCCCHH
Confidence 344445555544 4567889999999999999999998754
No 424
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=21.81 E-value=34 Score=24.33 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
-+...++++|++.||++.+|-..|.|+.
T Consensus 28 ~~~~s~~~IA~~aGvs~gtlY~yF~sKe 55 (194)
T 2nx4_A 28 IEAANMRDIATEAGYTNGALSHYFAGKD 55 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCcchHHHhCcCHH
Confidence 4566789999999999999999998753
No 425
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=21.73 E-value=39 Score=24.81 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhcccc
Q 044959 109 VGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 109 r~efc~eiGl~r~VvKVWFqNrR 131 (159)
.++||+.+||++.+|.-|..+.+
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (192)
T 1y9q_A 27 LDATAQLTGVSKAMLGQIERGES 49 (192)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998754
No 426
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=21.72 E-value=30 Score=24.05 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 88 SKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 88 ekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
+.-.+.|.+.| -+...++++|++.||++.+|=..|.|+
T Consensus 9 ~aA~~lf~~~G-----y~~~s~~~Ia~~agvskgtlY~~F~sK 46 (179)
T 2eh3_A 9 EVSKELFFEKG-----YQGTSVEEIVKRANLSKGAFYFHFKSK 46 (179)
T ss_dssp HHHHHHHHHHC-----STTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHcC-----CccCCHHHHHHHhCCCcHHHHHHcCCH
Confidence 33344455544 446678999999999999999888775
No 427
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=21.66 E-value=38 Score=24.64 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 103 RHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 103 ~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.-+...+.++|++.||++.+|=..|.|.
T Consensus 37 g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K 64 (185)
T 3o60_A 37 TFESISIKDLCEQARVSRATFYRHHKEI 64 (185)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCSST
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 3567789999999999999999988875
No 428
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.61 E-value=42 Score=23.22 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=35.8
Q ss_pred CCccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 78 KRTKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
..-.+|.+|++++.+.|...-= .--+.+..+...+...+|++...++.+|.
T Consensus 12 ~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 12 EPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456888999999887776520 01135577888888888998888877765
No 429
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=21.61 E-value=53 Score=22.58 Aligned_cols=43 Identities=5% Similarity=0.056 Sum_probs=29.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhh
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVW 126 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVW 126 (159)
..+|..|.+.|..+..-. .......+.++|+.+||++.+|.--
T Consensus 9 ~~lt~~~~~~L~~l~~l~----~~~~~~s~~ela~~l~is~~tv~~~ 51 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYN----DSGEGAKINRIAKDLKIAPSSVFEE 51 (139)
T ss_dssp --CCHHHHHHHHHHHHHH----TTTSCBCHHHHHHHHTCCHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHH----hcCCCcCHHHHHHHhCCChHHHHHH
Confidence 357888888888766532 1222346778999999999887643
No 430
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=21.58 E-value=1.7e+02 Score=18.99 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=28.0
Q ss_pred ccCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCc
Q 044959 80 TKITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGITR 120 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~r 120 (159)
+.+|++|++.+...|...-= .-.+.+..+...+...+|+..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 44 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSP 44 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 46899999999998876420 112356788888888877543
No 431
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.55 E-value=23 Score=26.70 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHH---HHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 044959 81 KITEEQKSKMRRFA---DKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLN 128 (159)
Q Consensus 81 kFT~eQkekLe~ff---ek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFq 128 (159)
.+|+-|.+.|+-.. ++.| ++ ..+.+||+.+||+...+.-++.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g----~~--~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNG----YP--PSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS----SC--CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhC----CC--CCHHHHHHHcCCCcHHHHHHHH
Confidence 47888888887643 3443 21 2478899999999888776654
No 432
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.39 E-value=33 Score=23.88 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.+...+.++|++.||++.+|-.+|.|+
T Consensus 21 ~~~~ti~~IA~~agvs~~t~Y~~F~sK 47 (189)
T 3geu_A 21 YDGTTLDDIAKSVNIKKASLYYHFDSK 47 (189)
T ss_dssp HHHCCHHHHHHHTTCCHHHHTTTCSSH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHhCCH
Confidence 345679999999999999999999875
No 433
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=21.31 E-value=47 Score=25.18 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=15.4
Q ss_pred cCCHHHHHHHH--------HHHHH-hCCC
Q 044959 81 KITEEQKSKMR--------RFADK-LGWK 100 (159)
Q Consensus 81 kFT~eQkekLe--------~ffek-~GW~ 100 (159)
+||.+|++.|. +|+|. .||.
T Consensus 83 ~w~~~~l~~m~~~GN~~an~~~e~~~~~~ 111 (138)
T 2owa_A 83 KFTPIQLVRMDIGGNGRARNYFKQVLGVN 111 (138)
T ss_dssp CCCHHHHHHHHHCCHHHHHHHHHHHTCTT
T ss_pred cCCHHHHHHHHhhccHHHHHHHHHHcCCC
Confidence 48999999986 46776 7764
No 434
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.30 E-value=43 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=16.9
Q ss_pred ccccccCCCCCCccccccccc-cccccc
Q 044959 21 CGEFLKAGKDGTKEAFHCAAC-GCHRSF 47 (159)
Q Consensus 21 C~ef~~~~~~~~~~~l~CaaC-gcHRnF 47 (159)
|+.--|.=..-+.+.+.|..| |-||++
T Consensus 35 Cga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 35 CEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp SCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred CCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 565555434445667788766 668876
No 435
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=21.27 E-value=90 Score=21.28 Aligned_cols=47 Identities=4% Similarity=0.044 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCccchhhhh
Q 044959 81 KITEEQKSKMRRFADKLGW-KPQRHDEEEVGKFCGEVGITRKMFKVWL 127 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW-~iq~~d~~~r~efc~eiGl~r~VvKVWF 127 (159)
.+|.+|++++.+.|...-= .-.+.+..++..+....+++...+..+|
T Consensus 7 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp SSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 4678888888887765310 0112445666666666677766666555
No 436
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=21.26 E-value=1.2e+02 Score=21.02 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=32.7
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC---Cccchhhhh
Q 044959 79 RTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGI---TRKMFKVWL 127 (159)
Q Consensus 79 RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl---~r~VvKVWF 127 (159)
.|.||.+|++.|.+.|.... .-.+.+..+...+...+|. +...++..|
T Consensus 12 ~~~~s~~~i~~l~~~fd~~d-~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f 62 (183)
T 1s6c_A 12 QTNFTKRELQVLYRGFKNEX-PSGVVNEETFKQIYAQFFPHGDASTYAHYLF 62 (183)
T ss_dssp HSSCCHHHHHHHHHHHHHHC-TTSEECHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhC-CCCcCCHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 36789999999999877630 1235778888888888874 334444444
No 437
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=21.18 E-value=25 Score=25.66 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhcccc
Q 044959 87 KSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 87 kekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
++...+.|.+.| .+...++++|++.||++.+|-..|.|+-
T Consensus 34 l~AA~~lf~~~G-----~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 73 (217)
T 3hta_A 34 IDAAIRVVGQKG-----IAGLSHRTVAAEADVPLGSTTYHFATLD 73 (217)
T ss_dssp HHHHHHHHHHHT-----GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcC-----cccCCHHHHHHHcCCCcchhhhcCCCHH
Confidence 344444555544 4567899999999999999999998753
No 438
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=20.95 E-value=1.8e+02 Score=20.20 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=26.9
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCC
Q 044959 77 TKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGIT 119 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~ 119 (159)
+.+..||.+|+++|.+.+... ..++....-.|+-.+|+-
T Consensus 2 ~~~~~lt~~e~~~l~~~~~~~----~~~~~~~~~~l~~~tG~R 40 (170)
T 1aih_A 2 TELAFLYERDIYRLLAECDNS----RNPDLGLIVRICLATGAR 40 (170)
T ss_dssp CCCCCCCHHHHHHHHHHHTTS----SSTTHHHHHHHHHHHCCC
T ss_pred CccccCCHHHHHHHHHHHhcc----cchhHHHHHHHHHHhCCc
Confidence 455679999999999988653 224455566677666664
No 439
>4fhr_A Flagellar motor switch protein FLIM; motor protein; 1.93A {Thermotoga maritima} PDB: 3soh_A 2hp7_A
Probab=20.88 E-value=59 Score=24.94 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=23.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCc
Q 044959 80 TKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITR 120 (159)
Q Consensus 80 TkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r 120 (159)
||||.||+..|+-.+|+. ....+..|.+.+....
T Consensus 2 skfske~l~~Le~I~e~f-------aR~~~~~L~~~lr~~~ 35 (187)
T 4fhr_A 2 TKFSKEQLRTFQMIHENF-------GRALSTYLSGRLRTFV 35 (187)
T ss_dssp CCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCC
T ss_pred CcCCHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCCc
Confidence 899999999999877664 2334555555555443
No 440
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=20.79 E-value=1.2e+02 Score=22.52 Aligned_cols=43 Identities=23% Similarity=0.491 Sum_probs=32.8
Q ss_pred CCHHHHHHHHH-HHHHhCCCCCC--CC-HHHHHHHHHHhCCCccchh
Q 044959 82 ITEEQKSKMRR-FADKLGWKPQR--HD-EEEVGKFCGEVGITRKMFK 124 (159)
Q Consensus 82 FT~eQkekLe~-ffek~GW~iq~--~d-~~~r~efc~eiGl~r~VvK 124 (159)
.+..++.+++. +.+.+|+.++. .+ ..-+..||+.+|++..+.+
T Consensus 81 v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 127 (200)
T 1ais_B 81 VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRR 127 (200)
T ss_dssp SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 55667777666 66679998876 55 5789999999999977653
No 441
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=20.71 E-value=53 Score=28.84 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHh
Q 044959 81 KITEEQKSKMRRFADKLGWKPQR--HDEEEVGKFCGEV 116 (159)
Q Consensus 81 kFT~eQkekLe~ffek~GW~iq~--~d~~~r~efc~ei 116 (159)
.++.+|++.|+++||+.|+-+-+ -+.+++++|=.++
T Consensus 24 ~l~~~qve~~~~~fE~eGYLvlk~vFs~eEv~~l~~el 61 (344)
T 3nnf_A 24 AMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQKTL 61 (344)
T ss_dssp -CCSHHHHHHHHHHHHHSEEEETTCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhhccCceEEEcCCCCHHHHHHHHHHH
Confidence 45789999999999999965544 4678888876665
No 442
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=20.44 E-value=96 Score=25.40 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCCCCCH---HHHHHHHHHhCCCccch
Q 044959 89 KMRRFADKLGWKPQRHDE---EEVGKFCGEVGITRKMF 123 (159)
Q Consensus 89 kLe~ffek~GW~iq~~d~---~~r~efc~eiGl~r~Vv 123 (159)
.|++||.+..=.|.. |+ ..-++.|..|||++=.+
T Consensus 42 ~L~~FA~kHk~eI~~-dp~fR~~F~~mc~siGVDPLa~ 78 (233)
T 1u5t_A 42 RLVEFAKKHNSELQA-SPEFRSKFMHMCSSIGIDPLSL 78 (233)
T ss_dssp HHHHHHHHCTTTTTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHhHhhccc-CHHHHHHHHHHHHHcCCCCCcc
Confidence 467788885323333 33 36788899999996654
No 443
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=20.34 E-value=82 Score=24.16 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHhCCC-ccchhhhhccccCCC
Q 044959 102 QRHDEEEVGKFCGEVGIT-RKMFKVWLNNNRRRP 134 (159)
Q Consensus 102 q~~d~~~r~efc~eiGl~-r~VvKVWFqNrR~k~ 134 (159)
..+++++++.|-+.|.=+ ...|-.||-|++.-.
T Consensus 59 g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~kD~ 92 (146)
T 3u5c_S 59 GELTQEELERIVQIMQNPTHYKIPAWFLNRQNDI 92 (146)
T ss_dssp SSCCHHHHHHHHHHHTCTTTTTCCSTTCTBCSCS
T ss_pred ccCCHHHHHHHHHHHHhhcccCccHHHhhhhhcc
Confidence 346677777777776422 223445999987544
No 444
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=20.32 E-value=85 Score=21.91 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 83 TEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 83 T~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
|.|||++|-+.. -+.|++.+|+++..|-|-|+..
T Consensus 71 t~eqK~~l~~~l--------------~~~l~~~lg~~~~~v~V~i~e~ 104 (128)
T 1mww_A 71 MEGTKKRLIKML--------------FSELEYKLGIRAHDVEITIKEQ 104 (128)
T ss_dssp CHHHHHHHHHHH--------------HHHHHHHHCCCGGGEEEEEEEE
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhCcChhhEEEEEEEC
Confidence 899998887643 3457889999999998877754
No 445
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=20.23 E-value=44 Score=23.92 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 104 HDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 104 ~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
-+...++++|.+.||++.+|=..|.|+
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2wui_A 29 VGTTAMADLADAAGVSRGAVYGHYKNK 55 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred ccccCHHHHHHHhCCCHHHHHHHcCCH
Confidence 456788999999999999999999875
No 446
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=20.17 E-value=53 Score=26.90 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.5
Q ss_pred CCccCCHHHHHHHHHHHH
Q 044959 78 KRTKITEEQKSKMRRFAD 95 (159)
Q Consensus 78 ~RTkFT~eQkekLe~ffe 95 (159)
-.+.||+.|+++|.....
T Consensus 237 C~~~FT~gQ~~RM~~~~~ 254 (262)
T 2cki_A 237 CMVMFTQGQATRVNACLD 254 (262)
T ss_dssp TCCBCBHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHH
Confidence 468999999999998765
No 447
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.17 E-value=1.3e+02 Score=18.72 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=26.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhC
Q 044959 74 KAKTKRTKITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVG 117 (159)
Q Consensus 74 ~kKR~RTkFT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiG 117 (159)
+....|..||+|+=+.|.+..++.| .. .-.++|..|+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G----~~---~W~~Ia~~~~ 39 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCG----FG---NWQDVANQMC 39 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTC----TT---CHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC----cC---cHHHHHHHhC
Confidence 3456788999999999999888865 11 2455666664
No 448
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=20.13 E-value=1.3e+02 Score=20.94 Aligned_cols=43 Identities=14% Similarity=-0.050 Sum_probs=28.8
Q ss_pred CCCccCCHHHHHHHHHHHHHhCC------C-C--CCCCHHHHHHHHHHhCCCc
Q 044959 77 TKRTKITEEQKSKMRRFADKLGW------K-P--QRHDEEEVGKFCGEVGITR 120 (159)
Q Consensus 77 R~RTkFT~eQkekLe~ffek~GW------~-i--q~~d~~~r~efc~eiGl~r 120 (159)
...|.||++|++.|...|...-- . - .+.+..+... ...+|++.
T Consensus 9 ~~~~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~~~ 60 (183)
T 1dgu_A 9 QDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANP 60 (183)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSSCT
T ss_pred HHHcCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhcCc
Confidence 34688999999999998877532 1 2 3456666655 55566543
No 449
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.09 E-value=59 Score=22.26 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCccchhhhhccc
Q 044959 82 ITEEQKSKMRRFADKLGWKPQRHDEEEVGKFCGEVGITRKMFKVWLNNN 130 (159)
Q Consensus 82 FT~eQkekLe~ffek~GW~iq~~d~~~r~efc~eiGl~r~VvKVWFqNr 130 (159)
.|.||+++|-+.. -+.|.+.+|+++..+-|-|+..
T Consensus 68 ~t~eqk~~l~~~i--------------~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 2xcz_A 68 LDGSRTQEVSELV--------------CGHIEQNLGIPADRIYIGFEDV 102 (115)
T ss_dssp CCTTHHHHHHHHH--------------HHHHHHHHCCCGGGEEEEEEEC
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhCcCcccEEEEEEEC
Confidence 4789998776633 3457888999999999888764
No 450
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=59 Score=25.00 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=15.1
Q ss_pred cCCHHHHHHHH--------HHHHHhCC
Q 044959 81 KITEEQKSKMR--------RFADKLGW 99 (159)
Q Consensus 81 kFT~eQkekLe--------~ffek~GW 99 (159)
+||.+|++.|+ +|++..|+
T Consensus 77 ~W~~~~l~~m~~~GN~~an~~~e~~~~ 103 (149)
T 2crw_A 77 NWSWFQLRCMQVGGNASASSFFHQHGC 103 (149)
T ss_dssp CCCHHHHHHHHTTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 58999999986 57887764
No 451
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=20.04 E-value=43 Score=24.32 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCccchhhhhcccc
Q 044959 108 EVGKFCGEVGITRKMFKVWLNNNR 131 (159)
Q Consensus 108 ~r~efc~eiGl~r~VvKVWFqNrR 131 (159)
...+||..+||++..|.-|..+++
T Consensus 83 Tq~elA~~lGis~s~is~~E~G~~ 106 (141)
T 3kxa_A 83 TQSELATAAGLPQPYLSRIENSKQ 106 (141)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356899999999999999998764
Done!