BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044962
(726 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 145/313 (46%), Gaps = 23/313 (7%)
Query: 103 IDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPN 162
+D DPNYD +E D F+K T I++EYF D A LR+L
Sbjct: 25 VDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84
Query: 163 YNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIP 222
+S+A++ +EM + LLS L + V + F KL++ +L +D P
Sbjct: 85 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTP 144
Query: 223 DTVDVLALFIARAVVDDILPPAFLK---------KQMAALPKESKGIEVLKRAEKGYLEA 273
++ FIARAV D IL ++ + AAL K + VL KG
Sbjct: 145 RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKAT----VLLSMSKG---- 196
Query: 274 PLHAEIIERRWG-GSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIV 332
+ + WG G + V + I+ LL EY++SGD EA C +L+VP FHHE+V
Sbjct: 197 ---GKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELV 253
Query: 333 KRAVTMAMER--RQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARG 390
A+ M +E A +L LLK + I Q+ +G+ RI + + D++LD+P++
Sbjct: 254 YEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYS 313
Query: 391 ILHSLISKAASEG 403
+L + + G
Sbjct: 314 VLERFVEECFQAG 326
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 138/287 (48%), Gaps = 16/287 (5%)
Query: 426 DTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREK 485
D F+ IIQEYF GD EV+ L + +L E+ + ++LA++ K +
Sbjct: 49 DETAFEKTLTPIIQEYFEHGDTNEVAEML---RDLNLGEMKSGVPVLAVSLALEGKASHR 105
Query: 486 EMASVLLSSL---FLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAP 542
EM S LLS L + +DV F L++ + ALD P + + F+ARAV D +L
Sbjct: 106 EMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCN 165
Query: 543 QHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWXXXXXXXRPGWAVEDVKDK 602
+++ ++ L A LL+ G+R W V + +
Sbjct: 166 TYIDSYKGTVDCVQA--RAALDKATVLLSMSKGGKRKDSVWGSGGGQQ----PVNHLVKE 219
Query: 603 IGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----LWGLLKEC 658
I LL+EY GD+ EA C+KEL +P FHHE+V +A+V V+E E + LLK
Sbjct: 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL 279
Query: 659 SDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 280 WKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 326
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 36/278 (12%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASE 358
+ ++ EY GD E DL + + AV++A+E + + + L
Sbjct: 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 116
Query: 359 EGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCAX---XXXXXXX 415
+++ + + K F +++ + +L+LD P A ++ I++A +G LC
Sbjct: 117 GTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVD 176
Query: 416 XXXXXXXXDTDTKLFKMKAQS-------------------------IIQEYFLSGDILEV 450
D T L M +++EY LSGDI E
Sbjct: 177 CVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEA 236
Query: 451 SGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREK-EMASVLLSSLF----LPADDVVNG 505
CL K+ + + V I + ++ +M LL SL+ + D + G
Sbjct: 237 EHCL---KELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293
Query: 506 FVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQ 543
+ + D LD P L F+ +++ Q
Sbjct: 294 YERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQ 331
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 606 LLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHIT 665
+++EY GD E +++L + + A+ +E K K SD
Sbjct: 60 IIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTV 119
Query: 666 M--NQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSF 711
M N + K F ++ + L +LALD P A + ++ +A +G L +++
Sbjct: 120 MSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 167
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 16/287 (5%)
Query: 426 DTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREK 485
D + F+ IIQEYF GD EV+ E + +L E+ + ++LA++ K +
Sbjct: 12 DERAFEKTLTPIIQEYFEHGDTNEVA---EMLRDLNLGEMKSGVPVLAVSLALEGKASHR 68
Query: 486 EMASVLLSSL---FLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAP 542
EM S LLS L + DV F L++ + ALD P + + F+ARAV D +L
Sbjct: 69 EMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCN 128
Query: 543 QHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWXXXXXXXRPGWAVEDVKDK 602
+++ ++ L A LL+ G+R W +V + +
Sbjct: 129 TYIDSYKGTVDCVQA--RAALDKATVLLSMSKGGKRKDSVWGSGGGQQ----SVNHLVKE 182
Query: 603 IGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLW----GLLKEC 658
I LL+EY GD+ EA C+KEL +P FHHE+V +A++ V+E E + LLK
Sbjct: 183 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSL 242
Query: 659 SDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 243 WKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 289
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 25/290 (8%)
Query: 128 LDE--FKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEM 185
LDE F+K T I++EYF D A LR+L +S+A++ +EM
Sbjct: 11 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREM 70
Query: 186 AAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAF 245
+ LLS L + V + F KL++ +L +D P ++ FIARAV D IL +
Sbjct: 71 TSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 130
Query: 246 LK---------KQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWG-GSKNKTVEDV 295
+ + AAL K + VL KG + + WG G ++V +
Sbjct: 131 IDSYKGTVDCVQARAALDKAT----VLLSMSKG-------GKRKDSVWGSGGGQQSVNHL 179
Query: 296 KVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEG--RLLGLL 353
I+ LL EY++SGD EA C +L+VP FHHE+V A+ M +E +L LL
Sbjct: 180 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLL 239
Query: 354 KEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
K + I Q+ +G+ RI + + D++LD+P++ +L + + G
Sbjct: 240 KSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 289
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 36/278 (12%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASE 358
+ ++ EY GD E DL + + AV++A+E + + + L
Sbjct: 20 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 79
Query: 359 EGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCAX---XXXXXXX 415
+++ + + K F +++ + +L+LD P A ++ I++A +G LC
Sbjct: 80 GTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVD 139
Query: 416 XXXXXXXXDTDTKLFKMK---------------AQSI----------IQEYFLSGDILEV 450
D T L M QS+ ++EY LSGDI E
Sbjct: 140 CVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEA 199
Query: 451 SGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREK-EMASVLLSSLF----LPADDVVNG 505
CL K+ + + V I + ++ +M LL SL+ + D + G
Sbjct: 200 EHCL---KELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 256
Query: 506 FVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQ 543
+ + D LD P L F+ +++ Q
Sbjct: 257 YERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQ 294
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 606 LLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHIT 665
+++EY GD E +++L + + A+ +E K K SD
Sbjct: 23 IIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTV 82
Query: 666 MNQ--MMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSF 711
M+ + K F ++ + L +LALD P A + ++ +A +G L +++
Sbjct: 83 MSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 130
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 133/283 (46%), Gaps = 16/283 (5%)
Query: 430 FKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMAS 489
F+ IIQEYF GD EV+ E + +L E + ++LA++ K +E S
Sbjct: 2 FEKTLTPIIQEYFEHGDTNEVA---EXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTS 58
Query: 490 VLLSSL---FLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLE 546
LLS L DV F L++ + ALD P + + F+ARAV D +L +++
Sbjct: 59 KLLSDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID 118
Query: 547 EIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWXXXXXXXRPGWAVEDVKDKIGRL 606
++ L A LL+ G+R W +V + +I L
Sbjct: 119 SYKGTVDCVQA--RAALDKATVLLSXSKGGKRKDSVWGSGGGQQ----SVNHLVKEIDXL 172
Query: 607 LEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLW----GLLKECSDSG 662
L+EY GD+ EA C+KEL +P FHHE+V +A++ V+E E + LLK S
Sbjct: 173 LKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIXVLESTGESTFKXILDLLKSLWKSS 232
Query: 663 HITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
IT++Q +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 233 TITVDQXKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 275
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 131/285 (45%), Gaps = 23/285 (8%)
Query: 131 FKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLL 190
F+K T I++EYF D A LR+L +S+A++ +E + LL
Sbjct: 2 FEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLL 61
Query: 191 SALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLK--- 247
S L V + F KL++ +L +D P ++ FIARAV D IL ++
Sbjct: 62 SDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYK 121
Query: 248 ------KQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWG-GSKNKTVEDVKVRIN 300
+ AAL K + VL KG + + WG G ++V + I+
Sbjct: 122 GTVDCVQARAALDKAT----VLLSXSKG-------GKRKDSVWGSGGGQQSVNHLVKEID 170
Query: 301 DLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEG--RLLGLLKEASE 358
LL EY++SGD EA C +L+VP FHHE+V A+ +E +L LLK +
Sbjct: 171 XLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIXVLESTGESTFKXILDLLKSLWK 230
Query: 359 EGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
I Q +G+ RI + + D++LD+P++ +L + + G
Sbjct: 231 SSTITVDQXKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 275
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAME----RRQAEGRLLGLLK 354
+ ++ EY GD E DL + + AV++A+E R+ +LL L
Sbjct: 6 LTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLLSDLC 65
Query: 355 EASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLC 406
+ + + + K F +++ + +L+LD P A ++ I++A +G LC
Sbjct: 66 GT----VXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILC 113
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4
Length = 129
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 596 VEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----L 651
V + +I LL+EY GD+ EA C+KEL +P FHHE+V +A+V V+E E +
Sbjct: 3 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 62
Query: 652 WGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
LLK S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 63 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 116
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMER--RQAEGRLLGLLKEA 356
I+ LL EY++SGD EA C +L+VP FHHE+V A+ M +E A +L LLK
Sbjct: 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL 69
Query: 357 SEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
+ I Q+ +G+ RI + + D++LD+P++ +L + + G
Sbjct: 70 WKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 116
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 128 LDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEK-EMA 186
++ K+ ++++EY + D+ A + L+EL P++++ V I + ++ + +M
Sbjct: 3 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 62
Query: 187 AVLLSALY-ADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFI 232
LL +L+ + I Q+ RG+ ++ D+ +D+P + VL F+
Sbjct: 63 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 109
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 131
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 596 VEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----L 651
V + +I LL+EY GD+ EA C+KEL +P FHHE+V +A+V V+E E +
Sbjct: 6 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 65
Query: 652 WGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
LLK S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 66 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 119
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 285 GGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMER-- 342
GG + V + I+ LL EY++SGD EA C +L+VP FHHE+V A+ M +E
Sbjct: 1 GG--QQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTG 58
Query: 343 RQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASE 402
A +L LLK + I Q+ +G+ RI + + D++LD+P++ +L + +
Sbjct: 59 ESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 118
Query: 403 G 403
G
Sbjct: 119 G 119
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 128 LDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEK-EMA 186
++ K+ ++++EY + D+ A + L+EL P++++ V I + ++ + +M
Sbjct: 6 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 65
Query: 187 AVLLSALY-ADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFI 232
LL +L+ + I Q+ RG+ ++ D+ +D+P + VL F+
Sbjct: 66 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 112
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4
Length = 136
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 596 VEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----L 651
V + +I LL+EY GD+ EA C+KEL +P FHHE+V +A+V V+E E +
Sbjct: 11 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 70
Query: 652 WGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
LLK S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 71 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 124
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 285 GGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMER-- 342
G + V + I+ LL EY++SGD EA C +L+VP FHHE+V A+ M +E
Sbjct: 4 GSGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTG 63
Query: 343 RQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASE 402
A +L LLK + I Q+ +G+ RI + + D++LD+P++ +L + +
Sbjct: 64 ESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 123
Query: 403 G 403
G
Sbjct: 124 G 124
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 119 PSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDR 178
P ++ K+ ++++EY + D+ A + L+EL P++++ V I + ++
Sbjct: 2 PLGSGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLES 61
Query: 179 HDKEK-EMAAVLLSALY-ADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFI 232
+ +M LL +L+ + I Q+ RG+ ++ D+ +D+P + VL F+
Sbjct: 62 TGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 117
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4
(mouse); Form2
Length = 152
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 596 VEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----L 651
V + +I LL+EY GD+ EA C+KEL +P FHHE+V +A+V V+E E +
Sbjct: 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 64
Query: 652 WGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
LLK S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 65 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMER--RQAEGRLLGLLKEA 356
I+ LL EY++SGD EA C +L+VP FHHE+V A+ M +E A +L LLK
Sbjct: 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL 71
Query: 357 SEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
+ I Q+ +G+ RI + + D++LD+P++ +L + + G
Sbjct: 72 WKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 128 LDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEK-EMA 186
++ K+ ++++EY + D+ A + L+EL P++++ V I + ++ + +M
Sbjct: 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 64
Query: 187 AVLLSALY-ADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAF 245
LL +L+ + I Q+ RG+ ++ D+ +D+P + VL F V++
Sbjct: 65 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERF-----VEECFQAGI 119
Query: 246 LKKQMAAL-PKESKG 259
+ KQ+ L P S+G
Sbjct: 120 ISKQLRDLCPSRSRG 134
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed
Cell Death 4
Length = 137
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 602 KIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWG----LLKE 657
+I LL+EY GD+ EA C+KEL +P FHHE+V +A++ V+E E + LLK
Sbjct: 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKS 70
Query: 658 CSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 71 LWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEG--RLLGLLKEA 356
I+ LL EY++SGD EA C +L+VP FHHE+V A+ M +E +L LLK
Sbjct: 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSL 71
Query: 357 SEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
+ I Q+ +G+ RI + + D++LD+P++ +L + + G
Sbjct: 72 WKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 133 KKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEK-EMAAVLLS 191
K+ ++++EY + D+ A + L+EL P++++ V I + ++ + +M LL
Sbjct: 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLK 69
Query: 192 ALY-ADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQM 250
+L+ + I Q+ RG+ ++ D+ +D+P + VL F V++ + KQ+
Sbjct: 70 SLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERF-----VEECFQAGIISKQL 124
Query: 251 AALPKESKG 259
L G
Sbjct: 125 RDLCPSRSG 133
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
pdb|2IOL|B Chain B, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
Length = 150
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 596 VEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----L 651
V + +I LL+EY GD+ EA C+KEL +P FHHE+V +A+V V+E E +
Sbjct: 5 VNHLVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLESTGESAFKXI 64
Query: 652 WGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
LLK S IT++Q +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 65 LDLLKSLWKSSTITIDQXKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMER--RQAEGRLLGLLKEA 356
I+ LL EY++SGD EA C +L+VP FHHE+V A+ +E A +L LLK
Sbjct: 12 IDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLESTGESAFKXILDLLKSL 71
Query: 357 SEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
+ I Q +G+ RI + + D++LD+P++ +L + + G
Sbjct: 72 WKSSTITIDQXKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 128 LDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKE--KEM 185
++ K+ +++EY + D+ A + L+EL P++++ V I ++ + K +
Sbjct: 5 VNHLVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLESTGESAFKXI 64
Query: 186 AAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAF 245
+L S + I Q RG+ ++ D+ +D+P + VL F V++
Sbjct: 65 LDLLKSLWKSSTITIDQXKRGYERIYNEIPDINLDVPHSYSVLERF-----VEECFQAGI 119
Query: 246 LKKQMAAL 253
+ KQ+ L
Sbjct: 120 ISKQLRDL 127
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 3
Length = 150
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 596 VEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----L 651
V + +I LL+EY GD+ EA +KEL +P FHHE+V +A+V V+E E +
Sbjct: 5 VNHLVKEIDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 64
Query: 652 WGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEG 705
LLK S IT++QM +G+ R+ + D+ LDVP + +VE+ G
Sbjct: 65 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMER--RQAEGRLLGLLKEA 356
I+ LL EY++SGD EA +L+VP FHHE+V A+ M +E A +L LLK
Sbjct: 12 IDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL 71
Query: 357 SEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
+ I Q+ +G+ RI + + D++LD+P++ +L + + G
Sbjct: 72 WKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 128 LDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEK-EMA 186
++ K+ ++++EY + D+ A + L+EL P++++ V I + ++ + +M
Sbjct: 5 VNHLVKEIDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 64
Query: 187 AVLLSALY-ADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAF 245
LL +L+ + I Q+ RG+ ++ D+ +D+P + VL F V++
Sbjct: 65 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERF-----VEECFQAGI 119
Query: 246 LKKQMAAL 253
+ KQ+ L
Sbjct: 120 ISKQLRDL 127
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 163
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 128 LDE--FKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEM 185
LDE F+K T I++EYF D A LR+L +S+A++ +EM
Sbjct: 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREM 63
Query: 186 AAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAF 245
+ LLS L + V + F KL++ +L +D P ++ FIARAV D IL +
Sbjct: 64 TSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 123
Query: 246 L 246
+
Sbjct: 124 I 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 426 DTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREK 485
D + F+ IIQEYF GD EV+ E + +L E+ + ++LA++ K +
Sbjct: 5 DERAFEKTLTPIIQEYFEHGDTNEVA---EMLRDLNLGEMKSGVPVLAVSLALEGKASHR 61
Query: 486 EMASVLLSSL---FLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAP 542
EM S LLS L + DV F L++ + ALD P + + F+ARAV D +L
Sbjct: 62 EMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCN 121
Query: 543 QHLE 546
+++
Sbjct: 122 TYID 125
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 51/108 (47%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASE 358
+ ++ EY GD E DL + + AV++A+E + + + L
Sbjct: 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72
Query: 359 EGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLC 406
+++ + + K F +++ + +L+LD P A ++ I++A +G LC
Sbjct: 73 GTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILC 120
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 606 LLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHIT 665
+++EY GD E +++L + + A+ +E K K SD
Sbjct: 16 IIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTV 75
Query: 666 MNQ--MMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSF 711
M+ + K F ++ + L +LALD P A + ++ +A +G L +++
Sbjct: 76 MSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 123
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi
pdb|1UG3|B Chain B, C-Terminal Portion Of Human Eif4gi
Length = 339
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 123 KSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKE 182
K+A +E +KK+ I+EEY +D+ A ++EL P+ + FV+ + ++R
Sbjct: 2 KAALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIA 61
Query: 183 KE-MAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDIL 241
+E M +L L A + Q Y+G +++E A+D+ +DIP LA + + + +
Sbjct: 62 REHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGV 121
Query: 242 P 242
P
Sbjct: 122 P 122
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 597 EDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKK---NERLWG 653
E+++ K ++EEY D++EA +C++EL P V+ + S +E+ E +
Sbjct: 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQ 67
Query: 654 LLKECSDSGHITMNQMMKGFGRVEESLDDLALDVP 688
LL + +GH++ Q +G + E +D+ +D+P
Sbjct: 68 LLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIP 102
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 293 EDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMER----RQAEGR 348
E+++ + ++ EY+ D KEA +C +L P V+ V +ER R+ G+
Sbjct: 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQ 67
Query: 349 LLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403
LL L A G ++ +Q +G I++ +D+ +DIP+ L L++ EG
Sbjct: 68 LLHQLLCA---GHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 119
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 433 KAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLL 492
K+++II+EY D+ E C++ SL IFV+ + ++R +E LL
Sbjct: 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL---LFIFVRHGVESTLERSAIAREHMGQLL 69
Query: 493 SSLF----LPADDVVNGFVMLIESADDTALDNPVV 523
L L G ++E A+D +D P V
Sbjct: 70 HQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHV 104
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 129 DEFKKKATIIVEEYFATDDVLSAANELRELRKP-NYNYYFVKRLISIAMDRHDKEKEMAA 187
+E K +V EY + + A N +RE+R P ++ + ++I +++DR D++KE A+
Sbjct: 9 EELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKAS 68
Query: 188 VLLSALYADAIDPPQVY-RGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDIL 241
L+S L + I + + F+ +++ L VDIP LA F ARA++ +++
Sbjct: 69 SLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELV 123
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Query: 434 AQSIIQEYFLSGDILE-VSGCLESE-KKSSLNEVNAIFVKRLITLAMDRKNREKEMASVL 491
++++ EY SG+ E V+G E K L E+ + ++I L++DR + +KE AS L
Sbjct: 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEM----LSKVIILSLDRSDEDKEKASSL 70
Query: 492 LSSL----FLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLE- 546
+S L +D+ + F+ +++ +D P+V LA F ARA++ E+++ L
Sbjct: 71 ISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQ 130
Query: 547 --EIGSQF 552
E G+ F
Sbjct: 131 PLESGTHF 138
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 302 LLIEYVVSGDKKEAFRCTNDLKVP-FFHHEIVKRAVTMAMER----RQAEGRLLGLLKEA 356
++ EY+ SG+ EA +++ P F E++ + + ++++R ++ L+ LLK+
Sbjct: 18 VVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ- 76
Query: 357 SEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKA 399
EG+ + + F ++D L +DIP + L ++A
Sbjct: 77 --EGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARA 117
>pdb|2RG8|A Chain A, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
pdb|2RG8|B Chain B, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
Length = 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 128 LDE--FKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEM 185
LDE F+K T I++EYF D A LR+L +S+A++ +E
Sbjct: 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREX 63
Query: 186 AAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAF 245
+ LLS L V + F KL++ +L +D P ++ FIARAV D IL +
Sbjct: 64 TSKLLSDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 123
Query: 246 L 246
+
Sbjct: 124 I 124
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 426 DTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREK 485
D + F+ IIQEYF GD EV+ E + +L E + ++LA++ K +
Sbjct: 5 DERAFEKTLTPIIQEYFEHGDTNEVA---EXLRDLNLGEXKSGVPVLAVSLALEGKASHR 61
Query: 486 EMASVLLSSL---FLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAP 542
E S LLS L DV F L++ + ALD P + + F+ARAV D +L
Sbjct: 62 EXTSKLLSDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCN 121
Query: 543 QHLE 546
+++
Sbjct: 122 TYID 125
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAME----RRQAEGRLLGLLK 354
+ ++ EY GD E DL + + AV++A+E R+ +LL L
Sbjct: 13 LTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLLSDLC 72
Query: 355 EASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLC 406
+ + + + K F +++ + +L+LD P A ++ I++A +G LC
Sbjct: 73 GT----VXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILC 120
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 606 LLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSD-SGHI 664
+++EY GD E +++L + + A+ +E K K SD G +
Sbjct: 16 IIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLLSDLCGTV 75
Query: 665 -TMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSF 711
+ + K F ++ + L +LALD P A + ++ +A +G L +++
Sbjct: 76 XSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 123
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 33/133 (24%)
Query: 167 FVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTV- 225
F+ R+IS + EK ++ + +Y + ++ R FI V+ A + P+TV
Sbjct: 398 FIDRIISSVFKKEIHEKNLS---VQEIYGNLVN-----RSFILNVDMAHCSHPNYPETVQ 449
Query: 226 DVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWG 285
D LF +GI + K Y+ +PLHA +I+R +
Sbjct: 450 DNHQLFF------------------------HEGIAIKYNTNKNYVTSPLHASLIKRTFE 485
Query: 286 GSKNKTVEDVKVR 298
NK + +K +
Sbjct: 486 LYYNKYKQQIKYQ 498
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 638 KALVSVIEKKNERLWGLLKECSDSGHIT-------MNQMMKGFGRVEESLDDLALD 686
K LVS+I NE G+L++ ++ G IT + +++GFGR+ ++ L LD
Sbjct: 143 KKLVSIIMANNES--GVLQDIAEIGKITKKYEAKFHSDLVQGFGRIPINIKALGLD 196
>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein
Kinase Ck2alpha Prime With A Potent Indazole-Derivative
Inhibitor
Length = 339
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 21/129 (16%)
Query: 291 TVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVK---------------RA 335
TV+D + L+ EY+ + D K+ ++ D + F+ +E++K +
Sbjct: 106 TVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKP 165
Query: 336 VTMAMERRQAEGRLL--GL---LKEASEEGLINASQITKGFGRIID-TVDDLSLDIPNAR 389
+ ++ +Q + RL+ GL A E + AS+ KG ++D + D SLD+ +
Sbjct: 166 HNVMIDHQQKKLRLIDWGLAEFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLG 225
Query: 390 GILHSLISK 398
+L S+I +
Sbjct: 226 CMLASMIFR 234
>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform
Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo
Sapiens
Length = 350
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 21/129 (16%)
Query: 291 TVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVK---------------RA 335
TV+D + L+ EY+ + D K+ ++ D + F+ +E++K +
Sbjct: 101 TVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKP 160
Query: 336 VTMAMERRQAEGRLL--GL---LKEASEEGLINASQITKGFGRIID-TVDDLSLDIPNAR 389
+ ++ +Q + RL+ GL A E + AS+ KG ++D + D SLD+ +
Sbjct: 161 HNVMIDHQQKKLRLIDWGLAEFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLG 220
Query: 390 GILHSLISK 398
+L S+I +
Sbjct: 221 CMLASMIFR 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,092,710
Number of Sequences: 62578
Number of extensions: 689296
Number of successful extensions: 2077
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 92
length of query: 726
length of database: 14,973,337
effective HSP length: 106
effective length of query: 620
effective length of database: 8,340,069
effective search space: 5170842780
effective search space used: 5170842780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)