Query 044962
Match_columns 726
No_of_seqs 355 out of 560
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0403 Neoplastic transformat 100.0 7E-154 1E-158 1223.5 53.3 614 80-713 5-624 (645)
2 KOG0403 Neoplastic transformat 100.0 1.5E-77 3.3E-82 639.1 28.5 348 71-419 280-632 (645)
3 PF02847 MA3: MA3 domain; Int 99.9 9.6E-23 2.1E-27 187.0 12.8 112 131-242 1-113 (113)
4 smart00544 MA3 Domain in DAP-5 99.9 2.2E-22 4.8E-27 184.9 13.2 112 131-242 1-113 (113)
5 smart00544 MA3 Domain in DAP-5 99.9 2.9E-22 6.3E-27 184.1 12.9 110 599-708 1-113 (113)
6 PF02847 MA3: MA3 domain; Int 99.9 2.7E-22 6E-27 184.0 11.8 110 599-708 1-113 (113)
7 KOG0401 Translation initiation 99.2 2E-10 4.4E-15 139.9 15.0 156 125-285 769-930 (970)
8 KOG0401 Translation initiation 99.0 2.6E-10 5.7E-15 138.9 7.7 118 593-710 769-889 (970)
9 PLN03218 maturation of RBCL 1; 96.6 3.5 7.7E-05 52.2 34.7 68 603-670 850-918 (1060)
10 PLN03077 Protein ECB2; Provisi 95.4 9.7 0.00021 47.0 32.6 121 299-457 326-450 (857)
11 PLN03218 maturation of RBCL 1; 94.8 2.1 4.6E-05 54.2 21.0 66 603-668 722-790 (1060)
12 PF04774 HABP4_PAI-RBP1: Hyalu 91.2 0.42 9E-06 43.7 5.5 29 68-97 5-34 (106)
13 PLN03077 Protein ECB2; Provisi 89.1 52 0.0011 40.7 22.9 25 135-159 54-78 (857)
14 PLN03081 pentatricopeptide (PP 86.4 84 0.0018 37.9 25.0 26 135-160 90-115 (697)
15 PLN03081 pentatricopeptide (PP 73.3 2.2E+02 0.0047 34.4 32.2 59 300-361 263-321 (697)
16 PF04844 Ovate: Transcriptiona 60.9 27 0.00058 29.2 5.7 49 126-174 3-53 (59)
17 PF04286 DUF445: Protein of un 60.8 2.5E+02 0.0054 30.5 17.8 32 221-252 35-66 (367)
18 KOG2066 Vacuolar assembly/sort 58.6 3.9E+02 0.0085 33.1 16.8 248 126-401 448-748 (846)
19 PF05044 HPD: Homeo-prospero d 56.4 38 0.00083 33.1 6.8 71 362-443 38-117 (158)
20 PF04286 DUF445: Protein of un 55.4 3E+02 0.0066 29.8 21.3 145 324-535 28-172 (367)
21 PF06992 Phage_lambda_P: Repli 52.3 68 0.0015 33.9 8.4 57 350-406 68-141 (233)
22 TIGR01568 A_thal_3678 uncharac 51.1 59 0.0013 27.8 6.3 51 124-174 7-60 (66)
23 KOG3973 Uncharacterized conser 47.2 1.5E+02 0.0032 33.2 10.1 39 209-250 7-45 (465)
24 PF04844 Ovate: Transcriptiona 44.0 58 0.0013 27.2 5.2 46 595-640 4-51 (59)
25 KOG2066 Vacuolar assembly/sort 42.0 7.8E+02 0.017 30.6 16.7 63 564-639 638-700 (846)
26 KOG2243 Ca2+ release channel ( 41.4 40 0.00087 43.2 5.3 83 350-445 2907-2996(5019)
27 PRK13111 trpA tryptophan synth 39.9 82 0.0018 33.7 7.0 90 319-410 42-149 (258)
28 KOG1243 Protein kinase [Genera 38.7 1.8E+02 0.0039 35.3 10.0 181 428-613 325-516 (690)
29 PLN02591 tryptophan synthase 38.7 1E+02 0.0022 32.8 7.5 90 319-410 32-138 (250)
30 COG0177 Nth Predicted EndoIII- 35.7 3.1E+02 0.0068 28.6 10.2 135 479-640 25-184 (211)
31 PF06685 DUF1186: Protein of u 35.5 3.3E+02 0.0071 29.2 10.6 92 344-456 146-237 (249)
32 PF12854 PPR_1: PPR repeat 34.2 56 0.0012 23.6 3.3 24 603-626 10-33 (34)
33 TIGR01568 A_thal_3678 uncharac 34.1 1.3E+02 0.0027 25.9 5.8 46 595-640 10-58 (66)
34 PF14591 AF0941-like: AF0941-l 33.4 40 0.00088 32.2 3.0 31 598-628 41-72 (127)
35 PF09851 SHOCT: Short C-termin 33.3 62 0.0014 23.3 3.3 26 652-677 5-30 (31)
36 PF08876 DUF1836: Domain of un 30.9 37 0.0008 31.5 2.3 61 634-694 42-105 (105)
37 PF12295 Symplekin_C: Sympleki 29.3 2.5E+02 0.0054 28.5 8.2 84 133-216 74-161 (183)
38 KOG2259 Uncharacterized conser 28.9 1.2E+03 0.025 28.8 18.1 233 438-690 203-465 (823)
39 PF02854 MIF4G: MIF4G domain; 27.7 3.1E+02 0.0068 26.6 8.6 117 133-251 2-129 (209)
40 PF01535 PPR: PPR repeat; Int 27.2 79 0.0017 21.0 3.0 24 604-627 4-27 (31)
41 TIGR00756 PPR pentatricopeptid 26.9 89 0.0019 21.1 3.3 25 604-628 4-28 (35)
42 PLN02591 tryptophan synthase 26.8 1.9E+02 0.0042 30.8 7.1 88 623-712 32-138 (250)
43 KOG1964 Nuclear pore complex, 24.2 1.8E+02 0.0039 35.4 6.8 98 346-456 147-245 (800)
44 KOG2141 Protein involved in hi 23.8 1.5E+03 0.032 28.2 16.2 201 179-405 420-668 (822)
45 PF12755 Vac14_Fab1_bd: Vacuol 22.6 2.7E+02 0.0058 25.3 6.3 74 462-535 21-95 (97)
46 PF06300 Tsp45I: Tsp45I type I 21.6 3.1E+02 0.0067 29.1 7.1 98 125-241 30-132 (261)
47 KOG2659 LisH motif-containing 21.2 3.9E+02 0.0084 28.3 7.9 100 605-704 69-183 (228)
48 cd07347 harmonin_N_like N-term 20.8 2.2E+02 0.0048 25.1 5.1 35 431-467 21-55 (78)
49 PF12755 Vac14_Fab1_bd: Vacuol 20.6 5E+02 0.011 23.5 7.6 77 160-238 21-97 (97)
50 PF08785 Ku_PK_bind: Ku C term 20.6 52 0.0011 30.9 1.3 70 596-666 20-99 (120)
51 COG3437 Response regulator con 20.5 1.3E+03 0.027 26.2 17.1 76 257-337 252-346 (360)
52 PRK13111 trpA tryptophan synth 20.4 2.5E+02 0.0054 30.0 6.6 88 624-713 43-150 (258)
53 cd07347 harmonin_N_like N-term 20.0 2E+02 0.0043 25.4 4.7 38 126-164 16-54 (78)
No 1
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-154 Score=1223.48 Aligned_cols=614 Identities=59% Similarity=0.892 Sum_probs=587.3
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCC-CCCccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 044962 80 PKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDS-TEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELREL 158 (726)
Q Consensus 80 ~kk~G~ggK~~wg~~~~~~~~~~~D~~DPnyd~-ee~~~~~~~~~~~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL 158 (726)
.+|-|.|||+|||...| |.||||||+ |++|.++.+++. -+.++++|++.+||+|||++||+.-|+..++||
T Consensus 5 ~~~~~~g~~~~wg~~~d-------~d~dp~~dtge~~~~lv~s~~~-~pl~dykk~~~sii~eyfstgdv~vaa~dl~el 76 (645)
T KOG0403|consen 5 SPKKGEGSKGTWGVLDD-------DDNDPNYDTGEEPYHLVGSPVS-DPLSDYKKKAVSIIDEYFSTGDVVVAASDLKEL 76 (645)
T ss_pred ccccccCCCCccccccC-------CCCCCCCCCCCCcccccCCccC-CcHHHHHHHHHHHHHHHccCCCchhhHHHHHHh
Confidence 45567889999998876 449999999 999998888876 779999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHc
Q 044962 159 RKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVD 238 (726)
Q Consensus 159 ~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d 238 (726)
...+||++||+++|++||||+++|+||+|.|||.||+.+|++.||..||..|+++++|+.+|||+|.+.||.||||||+|
T Consensus 77 g~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~ddl~vdipdavnvlalfiaraivd 156 (645)
T KOG0403|consen 77 GSSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESADDLAVDIPDAVNVLALFIARAIVD 156 (645)
T ss_pred ccccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcccceecCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhcCChhhHhhh
Q 044962 239 DILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRC 318 (726)
Q Consensus 239 ~~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~Wgg~~~~~vee~k~~i~~lL~EY~~sgD~~EA~rc 318 (726)
++|||.||.+.+..+|.+++|+++++.|+|+||+++|+.+.++..|||...+++||+|++|+..+.||..+||..|||||
T Consensus 157 dilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rc 236 (645)
T KOG0403|consen 157 DILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRC 236 (645)
T ss_pred hccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHHHH
Q 044962 319 TNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISK 398 (726)
Q Consensus 319 lreL~~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~ 398 (726)
+|+|++||||||.|+++|+++||+..++..+++++++....|+||++||.|||.|+.++++|++||||.|+..|+.++.+
T Consensus 237 iR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~K 316 (645)
T KOG0403|consen 237 IRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPK 316 (645)
T ss_pred HHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhccc
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccccccCCCCcccccCCCccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhh
Q 044962 399 AASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAM 478 (726)
Q Consensus 399 ~~~~g~l~~~~~~~~~~~~~k~~~~~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~al 478 (726)
+.+.||++.+..+.....+. ..+..+.|||.+.+||+|||.|||+.|++++|++ |+.|+|++.|+|++|++||
T Consensus 317 a~s~gwl~e~s~k~~s~~~g----~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~D---Ln~~E~~~~f~k~lITLAl 389 (645)
T KOG0403|consen 317 APSGGWLDENSFKETSVLPG----DSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRD---LNLPEYNPGFLKLLITLAL 389 (645)
T ss_pred CCCCCccchhhhcccccCCC----cchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHH---cCCccccchHHHHHHHHHh
Confidence 99999999555444322221 1344899999999999999999999999999999 8999999999999999999
Q ss_pred ccCchhHhHHHHHHHhcc---CChHHHHHHHHHHHhhccccccCchhhHHHHHHHHHHHHhhCCCCchhHHHhhhccCCC
Q 044962 479 DRKNREKEMASVLLSSLF---LPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGA 555 (726)
Q Consensus 479 drk~~eREl~S~LLs~L~---l~~~~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV~Dd~l~p~~l~~~~~~~~~~ 555 (726)
|||++||||+|+|||+|| +++.|+.+||.+||++++|+.||+|+|++.||+||||||+||+|.|.+|+++.++++ +
T Consensus 390 drK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp-~ 468 (645)
T KOG0403|consen 390 DRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLP-P 468 (645)
T ss_pred ccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCC-C
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999998 7
Q ss_pred cchHHHHHHHHHHHHhcccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHH
Q 044962 556 ESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEI 635 (726)
Q Consensus 556 ~~~g~~~l~~a~~ll~~~~~~~rl~~~WG~g~~~~~~~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhel 635 (726)
.+.|++++++|++||++||+++|++||||+||+ ||+|+++++||.+||+||.++||+.|||+||+||+|||||||+
T Consensus 469 ~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~----g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEv 544 (645)
T KOG0403|consen 469 VSQGRETLDKARSLLSARHAGERLLRVWGGGGG----GWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEV 544 (645)
T ss_pred chhhHHHHHHHHHHHHHhhcccchhheecCCCC----cchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHH
Confidence 789999999999999999999999999999985 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccch--HHHHHHHHHHhCCCCCHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcchhh
Q 044962 636 VKKALVSVIEKKNE--RLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWF 713 (726)
Q Consensus 636 V~~ai~~~lE~~~e--~~~~LL~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~~~~ 713 (726)
||+||+|+||++++ ++++||+.|+++|+||.+||++||+||++.|+||+||||+|++.|..||+.|+++|+|..+++.
T Consensus 545 VkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~~~l~~ 624 (645)
T KOG0403|consen 545 VKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIISKQLRD 624 (645)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchhHHhhh
Confidence 99999999999986 8999999999999999999999999999999999999999999999999999999955554443
No 2
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-77 Score=639.06 Aligned_cols=348 Identities=39% Similarity=0.565 Sum_probs=322.9
Q ss_pred CCCCCC-CCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccCCCCCCCC---CCHHHHHHHHHHHHHHHhcCC
Q 044962 71 RQHSPR-DGRPKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDSTEEYERPSAKKSA---GDLDEFKKKATIIVEEYFATD 146 (726)
Q Consensus 71 ~~~~~~-~~~~kk~G~ggK~~wg~~~~~~~~~~~D~~DPnyd~ee~~~~~~~~~~~---~s~ee~~kk~~~ii~EYf~~~ 146 (726)
.|++++ +|-++++|.++++.|+-|.--+.-..+++++|||+-.++....++.+-. .+...|+|..++||+|||.+|
T Consensus 280 issSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsg 359 (645)
T KOG0403|consen 280 ISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSG 359 (645)
T ss_pred hhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcC
Confidence 356665 9999999999999999887555566789999999985443333332222 237889999999999999999
Q ss_pred CHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhhhhhhccccchHH
Q 044962 147 DVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVD 226 (726)
Q Consensus 147 D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~Gf~~lLe~l~DL~lDiP~a~~ 226 (726)
|+.|+++||++||.|+|.+.|++.+|++|||||++||||+|+|||.|+..++|++|+.+||.+||++++|+++|+|.|++
T Consensus 360 Dt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~ 439 (645)
T KOG0403|consen 360 DTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQ 439 (645)
T ss_pred ChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHHhCCC-CCCchHHHHHHHHHHHHH
Q 044962 227 VLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGS-KNKTVEDVKVRINDLLIE 305 (726)
Q Consensus 227 ~La~fiaraV~d~~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~Wgg~-~~~~vee~k~~i~~lL~E 305 (726)
.||.||||||.||+|.|..++++...+|..+.|.++++.| ++||+++|+++|+.++|||| ++|.|+++|++|.+||+|
T Consensus 440 elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~A-rsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeE 518 (645)
T KOG0403|consen 440 ELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKA-RSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEE 518 (645)
T ss_pred HHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHH-HHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989999999999 68999999999999999965 799999999999999999
Q ss_pred HHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccc
Q 044962 306 YVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDI 385 (726)
Q Consensus 306 Y~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDv 385 (726)
|..|||++|||+|++||+|||||||+||++|+|+||+.....+|++||++|+++|+||.+||.|||.||+++|+||+|||
T Consensus 519 Y~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDv 598 (645)
T KOG0403|consen 519 YELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDV 598 (645)
T ss_pred HHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCC
Confidence 99999999999999999999999999999999999998777799999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcCCccccccccCCCCccc
Q 044962 386 PNARGILHSLISKAASEGWLCASSLKSLSSEPEK 419 (726)
Q Consensus 386 P~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~k 419 (726)
|+||+.|++||++|.++|+|...+..-+|++.++
T Consensus 599 Pna~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~~ 632 (645)
T KOG0403|consen 599 PNAYEKFERYVEECFQNGIISKQLRDLCPSRLRK 632 (645)
T ss_pred CcHHHHHHHHHHHHHHcCchhHHhhhcchhhhcc
Confidence 9999999999999999998887777777766665
No 3
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=99.89 E-value=9.6e-23 Score=186.99 Aligned_cols=112 Identities=38% Similarity=0.545 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-hCCCChHHHHHHHHH
Q 044962 131 FKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALY-ADAIDPPQVYRGFIK 209 (726)
Q Consensus 131 ~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~-~~vls~~~i~~Gf~~ 209 (726)
|+|++..+|.|||+++|.+||+.|++||+.|.+++.||..+|+.+||+++.+|++++.|+++|+ .+.+++++|.+||..
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~ 80 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFED 80 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred HHhhhhhhhccccchHHHHHHHHHHHHHcCCCC
Q 044962 210 LVESADDLIVDIPDTVDVLALFIARAVVDDILP 242 (726)
Q Consensus 210 lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp 242 (726)
+++.++|+.+|+|++|+++|.|++|+|.+|+||
T Consensus 81 ~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 81 LLESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 999999999999999999999999999999997
No 4
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=99.88 E-value=2.2e-22 Score=184.87 Aligned_cols=112 Identities=40% Similarity=0.591 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-hCCCChHHHHHHHHH
Q 044962 131 FKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALY-ADAIDPPQVYRGFIK 209 (726)
Q Consensus 131 ~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~-~~vls~~~i~~Gf~~ 209 (726)
++|++..+|+|||+++|++||++||++|+.|.+++.||..+|+.+||+++.+|++++.||+.|+ .+.+++++|..||..
T Consensus 1 ~~k~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~ 80 (113)
T smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80 (113)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred HHhhhhhhhccccchHHHHHHHHHHHHHcCCCC
Q 044962 210 LVESADDLIVDIPDTVDVLALFIARAVVDDILP 242 (726)
Q Consensus 210 lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp 242 (726)
+++.++|+++|+|++|+++|.|+||+|.+|++|
T Consensus 81 ~~~~l~dl~~D~P~a~~~la~~~a~~v~~~~l~ 113 (113)
T smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113 (113)
T ss_pred HHhhChhhhcccccHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999997
No 5
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=99.88 E-value=2.9e-22 Score=184.13 Aligned_cols=110 Identities=38% Similarity=0.585 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 044962 599 VKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN---ERLWGLLKECSDSGHITMNQMMKGFGR 675 (726)
Q Consensus 599 l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~---e~~~~LL~~L~~~~~it~~q~~~Gf~r 675 (726)
++++|..+|+||++++|..||++||++|++|+|||++|+.+|.+++|+++ +.++.||++|++++.++++||.+||.+
T Consensus 1 ~~k~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~ 80 (113)
T smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80 (113)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999963 569999999999999999999999999
Q ss_pred HHhccccccccccchHHHHHHHHHHHHHcCCCC
Q 044962 676 VEESLDDLALDVPDAKKQFIHYVEKAKTEGWLD 708 (726)
Q Consensus 676 v~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~ 708 (726)
+++.++|+.+|+|+|+.+++.|+++++.+|+||
T Consensus 81 ~~~~l~dl~~D~P~a~~~la~~~a~~v~~~~l~ 113 (113)
T smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113 (113)
T ss_pred HHhhChhhhcccccHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999986
No 6
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=99.88 E-value=2.7e-22 Score=183.96 Aligned_cols=110 Identities=38% Similarity=0.579 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 044962 599 VKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN---ERLWGLLKECSDSGHITMNQMMKGFGR 675 (726)
Q Consensus 599 l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~---e~~~~LL~~L~~~~~it~~q~~~Gf~r 675 (726)
+++++..+|+||++++|.+||++||+||+.|.+||++|+.+|.+++|+++ +.++.||.+|++++++|.+||.+||.+
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~ 80 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFED 80 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999953 569999999999999999999999999
Q ss_pred HHhccccccccccchHHHHHHHHHHHHHcCCCC
Q 044962 676 VEESLDDLALDVPDAKKQFIHYVEKAKTEGWLD 708 (726)
Q Consensus 676 v~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~ 708 (726)
+++.++|+.+|+|++|.++++|+++++..|+||
T Consensus 81 ~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 81 LLESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 999999999999999999999999999999986
No 7
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2e-10 Score=139.85 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-hCCCChHHH
Q 044962 125 AGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALY-ADAIDPPQV 203 (726)
Q Consensus 125 ~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~-~~vls~~~i 203 (726)
..+.+.+..+.++|++|||+..+.+|++.|++++++|.+++.+|...|+..+++++..|+.+++||..|+ .+.++.+++
T Consensus 769 ~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 848 (970)
T KOG0401|consen 769 ALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETL 848 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHcCCCChHHHHHHh--hhCCCCchh---HHHHHHHHhhhhcccchHH
Q 044962 204 YRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQM--AALPKESKG---IEVLKRAEKGYLEAPLHAE 278 (726)
Q Consensus 204 ~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp~~fl~~~~--~~~~~~~~g---~~~L~~a~k~lL~~~~~~~ 278 (726)
..||...+..++|+.+|+|++|.|+++|+++.|..++++...+.... ...+.+..+ ..++.+.++ .-+..
T Consensus 849 ~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 923 (970)
T KOG0401|consen 849 EIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMRPNGRRSNVLFSVLEIVEK-----ELGRA 923 (970)
T ss_pred hhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCCccccccchHHHHHHHHHH-----hhhHH
Confidence 99999999999999999999999999999999999999997776632 222322222 244444433 33667
Q ss_pred HHHHHhC
Q 044962 279 IIERRWG 285 (726)
Q Consensus 279 ~v~~~Wg 285 (726)
.+...|.
T Consensus 924 ~~~~~~~ 930 (970)
T KOG0401|consen 924 DLGDIQR 930 (970)
T ss_pred HHHHHHH
Confidence 7888887
No 8
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.6e-10 Score=138.90 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=113.1
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCCHHHH
Q 044962 593 GWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN---ERLWGLLKECSDSGHITMNQM 669 (726)
Q Consensus 593 ~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~---e~~~~LL~~L~~~~~it~~q~ 669 (726)
+...+.+..++++|++||++.++.+||..|+.+|+.|.+|+++|..+|...+|+.. +.++.||..|+..+.++.+++
T Consensus 769 ~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 848 (970)
T KOG0401|consen 769 ALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETL 848 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHH
Confidence 35678999999999999999999999999999999999999999999999999995 568999999999999999999
Q ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcc
Q 044962 670 MKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSS 710 (726)
Q Consensus 670 ~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~ 710 (726)
..||..+...++|+.+|+|++|.|+++|+++.+.+|.++..
T Consensus 849 ~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~ 889 (970)
T KOG0401|consen 849 EIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDES 889 (970)
T ss_pred hhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHH
Confidence 99999999999999999999999999999999999999973
No 9
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.61 E-value=3.5 Score=52.23 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhCC-CCchHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCHHHHH
Q 044962 603 IGRLLEEYESGGDVREARRCIKELGM-PFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMM 670 (726)
Q Consensus 603 i~~lL~EYl~~~D~~EA~~Cl~EL~~-p~fhhelV~~ai~~~lE~~~e~~~~LL~~L~~~~~it~~q~~ 670 (726)
...+|.-++..++..+|...+.+++. |.-.|...+..+...+-+..++.+.||..+...|+++.-++.
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccc
Confidence 35566666788899999999999985 666778888888888755556789999999999999987653
No 10
>PLN03077 Protein ECB2; Provisional
Probab=95.43 E-value=9.7 Score=46.96 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhh----CCCcChHHHHHHHHHh
Q 044962 299 INDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASE----EGLINASQITKGFGRI 374 (726)
Q Consensus 299 i~~lL~EY~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~----~~lit~~Q~~kGF~Rv 374 (726)
.+.++.-|...|+.++|.+.++++..|. .+.+..+....-+....+..+.+++.... +..+|-..+..++.+
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d---~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~- 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMETKD---AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC- 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc-
Confidence 4667888888999999999998886553 23566666666555444555666665543 334444444444443
Q ss_pred hhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCCcccccCCCccHHHHHHHHHHHHHHHHccCCHHHHHHHh
Q 044962 375 IDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCL 454 (726)
Q Consensus 375 ~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~k~~~~~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l 454 (726)
..+ +-.|.++++ .+.+.|+.+. ......+|.-|...|+++++...+
T Consensus 402 ---~g~----~~~a~~l~~----~~~~~g~~~~-----------------------~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 402 ---LGD----LDVGVKLHE----LAERKGLISY-----------------------VVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred ---cch----HHHHHHHHH----HHHHhCCCcc-----------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 121 223333333 3333343211 112456777788888888888877
Q ss_pred hhh
Q 044962 455 ESE 457 (726)
Q Consensus 455 ~e~ 457 (726)
+++
T Consensus 448 ~~m 450 (857)
T PLN03077 448 HNI 450 (857)
T ss_pred HhC
Confidence 773
No 11
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.77 E-value=2.1 Score=54.20 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=50.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcccc--hHHHHHHHHHHhCCCCCHHH
Q 044962 603 IGRLLEEYESGGDVREARRCIKELGMPFF-HHEIVKKALVSVIEKKN--ERLWGLLKECSDSGHITMNQ 668 (726)
Q Consensus 603 i~~lL~EYl~~~D~~EA~~Cl~EL~~p~f-hhelV~~ai~~~lE~~~--e~~~~LL~~L~~~~~it~~q 668 (726)
.+.+|.-|...|+++||.+.++++..-.+ -..+.+..+..+.-+.. +....++.++.+.|+-+...
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 78899999999999999999998753222 23567777777777664 46788999998888766543
No 12
>PF04774 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; InterPro: IPR006861 This entry includes the HABP4 protein family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1. HABP4 has been observed to bind hyaluronan (a glucosaminoglycan), but it is not known whether this is its primary role in vivo. It has also been observed to bind RNA, but with a lower affinity than that for hyaluronan []. PAI-1 mRNA-binding protein specifically binds the mRNA of type-1 plasminogen activator inhibitor (PAI-1), and is thought to be involved in regulation of mRNA stability []. However, in both cases, the sequence motifs predicted to be important for ligand binding are not conserved throughout the family, so it is not known whether members of this family share a common function. Hyaluronan/mRNA-binding protein may be involved in nuclear functions such as the remodeling of chromatin and the regulation of transcription [, ].
Probab=91.25 E-value=0.42 Score=43.68 Aligned_cols=29 Identities=45% Similarity=0.830 Sum_probs=22.7
Q ss_pred CCCCCCCCCC-CCCCCCCCCccccccccccC
Q 044962 68 YDRRQHSPRD-GRPKKGGCGGKGTWGGLLDT 97 (726)
Q Consensus 68 ~~r~~~~~~~-~~~kk~G~ggK~~wg~~~~~ 97 (726)
.+|||.+++. ...||+| +|++.||.+.+.
T Consensus 5 fDR~Sgs~r~~~~~Kk~G-~G~~NWG~~~de 34 (106)
T PF04774_consen 5 FDRHSGSGRTKSEDKKGG-GGAHNWGSPKDE 34 (106)
T ss_pred ccCCCCCCCCCCccCCCC-ccccCCCCccch
Confidence 4899999987 5556655 599999998765
No 13
>PLN03077 Protein ECB2; Provisional
Probab=89.15 E-value=52 Score=40.70 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhC
Q 044962 135 ATIIVEEYFATDDVLSAANELRELR 159 (726)
Q Consensus 135 ~~~ii~EYf~~~D~~Ea~~~l~EL~ 159 (726)
...+|..|..+|..++|...+.++.
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~ 78 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQ 78 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4566788899999999888877763
No 14
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=86.41 E-value=84 Score=37.89 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCC
Q 044962 135 ATIIVEEYFATDDVLSAANELRELRK 160 (726)
Q Consensus 135 ~~~ii~EYf~~~D~~Ea~~~l~EL~~ 160 (726)
..++|..|-..|+..+|...++.+..
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~ 115 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEA 115 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 45678888899999999998887653
No 15
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=73.29 E-value=2.2e+02 Score=34.41 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhhCCC
Q 044962 300 NDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGL 361 (726)
Q Consensus 300 ~~lL~EY~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~~~l 361 (726)
+.++.-|...|+.++|.+.++++.-+ ..+.+..+....-.....+..+.++.++...|+
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 45678888889999999888877643 234677777777655445555666666655443
No 16
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=60.85 E-value=27 Score=29.21 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 044962 126 GDLDEFKKKATIIVEEYFAT--DDVLSAANELRELRKPNYNYYFVKRLISI 174 (726)
Q Consensus 126 ~s~ee~~kk~~~ii~EYf~~--~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~ 174 (726)
-+.++|++....+|.|---. .+++|.+.|.-.||.|.+|..+|+.+...
T Consensus 3 DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv 53 (59)
T PF04844_consen 3 DPYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAFVDV 53 (59)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHHHHH
Confidence 35789999999988886444 58899999999999999999988877653
No 17
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=60.81 E-value=2.5e+02 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=28.8
Q ss_pred ccchHHHHHHHHHHHHHcCCCChHHHHHHhhh
Q 044962 221 IPDTVDVLALFIARAVVDDILPPAFLKKQMAA 252 (726)
Q Consensus 221 iP~a~~~La~fiaraV~d~~lp~~fl~~~~~~ 252 (726)
||+-.+-+|.=+++.|.++.|++..+......
T Consensus 35 ip~~r~~~~~~~~~~v~~~ll~~~~i~~~l~~ 66 (367)
T PF04286_consen 35 IPKNRERIAESIGEMVENELLTPETIRRKLES 66 (367)
T ss_pred ccccHHHHHHHHHHHHHHHCCCHHHHHHHHhc
Confidence 78999999999999999999999888887653
No 18
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.57 E-value=3.9e+02 Score=33.09 Aligned_cols=248 Identities=16% Similarity=0.196 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHH
Q 044962 126 GDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYR 205 (726)
Q Consensus 126 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~ 205 (726)
....-+++.+-.++--+|...|.......+++...--|....+..++.-=+..+..+ -.+.++|.+|| +=..++.+
T Consensus 448 t~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~-~~L~e~La~LY---l~d~~Y~~ 523 (846)
T KOG2066|consen 448 TGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSES-TALLEVLAHLY---LYDNKYEK 523 (846)
T ss_pred CCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccc-hhHHHHHHHHH---HHccChHH
Confidence 333456666655555555558888888888887443343333333333222223333 34556688888 22236777
Q ss_pred HHHHHHhhhhhhhccccchHHHHH---HHHHHHH-----------Hc--CCCChHHHHHHhhhCCCCchhHHHHHHHHhh
Q 044962 206 GFIKLVESADDLIVDIPDTVDVLA---LFIARAV-----------VD--DILPPAFLKKQMAALPKESKGIEVLKRAEKG 269 (726)
Q Consensus 206 Gf~~lLe~l~DL~lDiP~a~~~La---~fiaraV-----------~d--~~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~ 269 (726)
+|...+..-+--..|+=+-.+..- .-|-+.+ .+ +.+||++|-......|. ....-|..
T Consensus 524 Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~--~l~~YL~k---- 597 (846)
T KOG2066|consen 524 ALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPK--LLYCYLHK---- 597 (846)
T ss_pred HHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChH--HHHHHHHH----
Confidence 777766655555544433332221 1111111 12 34777777776653332 11122211
Q ss_pred hhcccchHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh-----------cCChhhHhhhhhcCCCCCccHHHHH-----
Q 044962 270 YLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVV-----------SGDKKEAFRCTNDLKVPFFHHEIVK----- 333 (726)
Q Consensus 270 lL~~~~~~~~v~~~Wgg~~~~~vee~k~~i~~lL~EY~~-----------sgD~~EA~rclreL~~p~fhhElV~----- 333 (726)
++...| ++..+.+.+--++--||.. +-++++|...-..++ |..|+||
T Consensus 598 l~~rd~--------------~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~---~~~E~VYlLgrm 660 (846)
T KOG2066|consen 598 LFKRDH--------------FMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKN---FYEELVYLLGRM 660 (846)
T ss_pred HhhcCc--------------cccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhC---cHHHHHHHHHhh
Confidence 221221 1223334444444444443 237788877666665 6777775
Q ss_pred ----HHHHHHHhcccchhHHHHHHHHHhhCC--------CcChHHHHHHHHHhhhc---------cccccccccchhHHH
Q 044962 334 ----RAVTMAMERRQAEGRLLGLLKEASEEG--------LINASQITKGFGRIIDT---------VDDLSLDIPNARGIL 392 (726)
Q Consensus 334 ----~aL~~alE~~~~~~~i~~LLk~l~~~~--------lit~~Q~~kGF~Rv~~~---------ldDi~LDvP~A~~~l 392 (726)
+||.+.|++-.+.+...+..|+-.++. -+..+.|++++.-+.+. ++| -++||+-+..|
T Consensus 661 Gn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldkPe~~~~ll~i~~~~dpl~ii~kip~-g~~IPnLrdsl 739 (846)
T KOG2066|consen 661 GNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDKPEFIKALLNIGEHEDPLLIIRKIPD-GLEIPNLRDSL 739 (846)
T ss_pred cchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcHHHHHHHHhhhcccHHHHHhcCCC-CCCCccHHHHH
Confidence 677777776444443333333221111 23345566666333332 222 35778877777
Q ss_pred HHHHHHHHh
Q 044962 393 HSLISKAAS 401 (726)
Q Consensus 393 ~~~v~~~~~ 401 (726)
.+++.....
T Consensus 740 ~Kil~dy~~ 748 (846)
T KOG2066|consen 740 VKILQDYNL 748 (846)
T ss_pred HHHHHhhhh
Confidence 777766533
No 19
>PF05044 HPD: Homeo-prospero domain; InterPro: IPR007738 The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system []. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm []. This family contains an atypical homeobox domain.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2LMD_A 1XPX_A 1MIJ_A.
Probab=56.40 E-value=38 Score=33.11 Aligned_cols=71 Identities=23% Similarity=0.197 Sum_probs=49.7
Q ss_pred cChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCCc---------ccccCCCccHHHHHH
Q 044962 362 INASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEP---------EKRLLEDTDTKLFKM 432 (726)
Q Consensus 362 it~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~---------~k~~~~~~~~~efkk 432 (726)
.+.+|+++.|...-+. =|..+++|...|+.+|+-++.-+....... -|.+ +-+.++.|..
T Consensus 38 ~~TsQLiKWFSNFREF----------yYiQMEK~ARqa~~eGv~~~~~l~V~rdsELfr~LN~HYNk~N-~~evP~~Fl~ 106 (158)
T PF05044_consen 38 CNTSQLIKWFSNFREF----------YYIQMEKFARQAVSEGVKNADDLRVTRDSELFRVLNMHYNKNN-DFEVPDRFLE 106 (158)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHT-S-GGGSSSS-TTCHHHHHHHHHHTT--STT--HHHHH
T ss_pred hhHHHHHHHhccchhH----------HHHHHHHHHHHHHHccCCcHHHeeeccchHHHHHHHhhcccCC-CccCchhHHH
Confidence 4578999999988775 578899999999999998877544321100 1122 4566799999
Q ss_pred HHHHHHHHHHc
Q 044962 433 KAQSIIQEYFL 443 (726)
Q Consensus 433 ~~~~ii~EYf~ 443 (726)
-++..|+|||.
T Consensus 107 v~~~tLrEFf~ 117 (158)
T PF05044_consen 107 VVQITLREFFN 117 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 20
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=55.44 E-value=3e+02 Score=29.80 Aligned_cols=145 Identities=13% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcC
Q 044962 324 VPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEG 403 (726)
Q Consensus 324 ~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g 403 (726)
+| ||+.++ ..+.+++.+=+..++.+.++|++.+.+-|.+. +....+..++.
T Consensus 28 ip-~~~gii----------p~~r~~~~~~~~~~v~~~ll~~~~i~~~l~~~------------~~~~~~~~~~~------ 78 (367)
T PF04286_consen 28 IP-FHTGII----------PKNRERIAESIGEMVENELLTPETIRRKLESE------------DFSERLIEWLQ------ 78 (367)
T ss_pred CC-cccccc----------cccHHHHHHHHHHHHHHHCCCHHHHHHHHhcc------------cHHHHHHHHHh------
Confidence 66 677664 23567888888888999999999988877662 22222222222
Q ss_pred CccccccccCCCCcccccCCCccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCch
Q 044962 404 WLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNR 483 (726)
Q Consensus 404 ~l~~~~~~~~~~~~~k~~~~~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~ 483 (726)
.+...+.+......++.+++..-+.+.+...+... +...+..-..
T Consensus 79 -------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~----------------~~~~l~~~~~ 123 (367)
T PF04286_consen 79 -------------------DPENREKLRRILAELLEEILEKIDQEKIAEFIEKN----------------LRKKLSEIIL 123 (367)
T ss_pred -------------------chhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH----------------HHHHHHHhcc
Confidence 12334556777777888888777776666665551 1111111111
Q ss_pred hHhHHHHHHHhccCChHHHHHHHHHHHhhccccccCchhhHHHHHHHHHHHH
Q 044962 484 EKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAV 535 (726)
Q Consensus 484 eREl~S~LLs~L~l~~~~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV 535 (726)
. .+.+.+|..+. ........++.+++.+.+.. +-|...+.+..++...+
T Consensus 124 ~-~~~~~~l~~ll-~~~~~~~l~~~il~~i~~~l-~~~e~~~~I~~~i~~~~ 172 (367)
T PF04286_consen 124 A-PLLQKLLRSLL-EEEQHQKLLDRILEKIKEYL-KSEETRERIRDLIEEFL 172 (367)
T ss_pred c-hhHHHHHHHHH-hccchHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence 1 23333333333 55555556666666665533 33666666666666653
No 21
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=52.26 E-value=68 Score=33.90 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=46.6
Q ss_pred HHHHHHHhhCCCcChHHHHHHHHHhhhccccc-----------------cccccchhHHHHHHHHHHHhcCCcc
Q 044962 350 LGLLKEASEEGLINASQITKGFGRIIDTVDDL-----------------SLDIPNARGILHSLISKAASEGWLC 406 (726)
Q Consensus 350 ~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi-----------------~LDvP~A~~~l~~~v~~~~~~g~l~ 406 (726)
-.|++.+.+.|+.|.+|+..|+.+.-.+-.|. .+=+|++-++++.+-..|...|+.+
T Consensus 68 r~Wi~~f~engI~t~eQv~~Gm~~aR~~~spF~PS~GqFI~WCk~~~~~~lGLP~~del~~~~~~y~~~rg~y~ 141 (233)
T PF06992_consen 68 RQWIKAFAENGITTMEQVRAGMRRARASESPFWPSPGQFIAWCKPGDYEALGLPSVDELYQRYKRYCRYRGFYP 141 (233)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCCCCChhHHHHHHhcchHHhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 46999999999999999999999987664442 4668888888888888888777643
No 22
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=51.12 E-value=59 Score=27.81 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhc--C-CCHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 044962 124 SAGDLDEFKKKATIIVEEYFA--T-DDVLSAANELRELRKPNYNYYFVKRLISI 174 (726)
Q Consensus 124 ~~~s~ee~~kk~~~ii~EYf~--~-~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~ 174 (726)
+..+.++|++....+|.+-=- . .+++|.+.|.-.||.+.+|..++..+...
T Consensus 7 S~DPy~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl 60 (66)
T TIGR01568 7 SDDPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVDI 60 (66)
T ss_pred CCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHH
Confidence 345689999999999988733 2 46899999999999999999888776653
No 23
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=47.15 E-value=1.5e+02 Score=33.21 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHhhhhhhhccccchHHHHHHHHHHHHHcCCCChHHHHHHh
Q 044962 209 KLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQM 250 (726)
Q Consensus 209 ~lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp~~fl~~~~ 250 (726)
.++++|.||..--|.-.+ .-+.||+..|+++|.|-....
T Consensus 7 ~lvdslk~l~~qg~~~k~---~~lsral~ag~~spdf~~~i~ 45 (465)
T KOG3973|consen 7 YLVDSLKALSFQGHCQKQ---ENLSRALMAGGISPDFANQII 45 (465)
T ss_pred HHHHHHHHhccCCcccch---hhHHHHHHcCCCChhHHHHHH
Confidence 367777777777766554 357899999999998766543
No 24
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=44.03 E-value=58 Score=27.23 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHhh--cCCHHHHHHHHHhhCCCCchHHHHHHHH
Q 044962 595 AVEDVKDKIGRLLEEYES--GGDVREARRCIKELGMPFFHHEIVKKAL 640 (726)
Q Consensus 595 ~~e~l~~ki~~lL~EYl~--~~D~~EA~~Cl~EL~~p~fhhelV~~ai 640 (726)
|-++.++.|...+.|--. -.|++|-..|.-.||.|.+|+-+|+-..
T Consensus 4 P~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~ 51 (59)
T PF04844_consen 4 PYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAFV 51 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHHH
Confidence 457888888888888743 3589999999999999987776665543
No 25
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.99 E-value=7.8e+02 Score=30.65 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=45.1
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHH
Q 044962 564 QMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKA 639 (726)
Q Consensus 564 ~~a~~ll~~~~~~~rl~~~WG~g~~~~~~~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~a 639 (726)
++|..+-+.+.=-+.+..+||--| ..++..+.++.|| +|++.|++.++|-+-+..+-.++...
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrmG----------n~k~AL~lII~el---~die~AIefvKeq~D~eLWe~LI~~~ 700 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRMG----------NAKEALKLIINEL---RDIEKAIEFVKEQDDSELWEDLINYS 700 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhhc----------chHHHHHHHHHHh---hCHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344444444444456788999444 2677888889987 68999999999999988776665554
No 26
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=41.35 E-value=40 Score=43.19 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=46.9
Q ss_pred HHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccc-----hhHHHHHHHHHHHhc-CCccccccccCCCCccc-ccC
Q 044962 350 LGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPN-----ARGILHSLISKAASE-GWLCASSLKSLSSEPEK-RLL 422 (726)
Q Consensus 350 ~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~-----A~~~l~~~v~~~~~~-g~l~~~~~~~~~~~~~k-~~~ 422 (726)
-+++|-+--.|++-+ +|| .|+.||.|. ||.+|.+++.+.-.+ .+| ..|.. .+++|.- ...
T Consensus 2907 qdi~kflqing~~vs----rg~-------kdleld~~siekrfay~flkkiikyvd~a~e~i-~~~d~-i~s~gk~e~~p 2973 (5019)
T KOG2243|consen 2907 QDIFKFLQINGIAVS----RGF-------KDLELDAPSIEKRFAYKFLKKIIKYVDEAHEFI-AEFDA-IGSRGKGEHFP 2973 (5019)
T ss_pred HHHHHHhhcccEEec----ccc-------cccccCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc-cccCCCcCCCc
Confidence 345555544455443 554 578899986 777777776654332 222 12221 2233322 011
Q ss_pred CCccHHHHHHHHHHHHHHHHccC
Q 044962 423 EDTDTKLFKMKAQSIIQEYFLSG 445 (726)
Q Consensus 423 ~~~~~~efkk~~~~ii~EYf~~~ 445 (726)
-++..+=|.|-+-++|..||.+-
T Consensus 2974 ~dqeikffakv~lplidqyf~~h 2996 (5019)
T KOG2243|consen 2974 RDQEIKFFAKVLLPLIDQYFKNH 2996 (5019)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Confidence 24445667788899999999764
No 27
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.93 E-value=82 Score=33.69 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=65.8
Q ss_pred hhcCCCCCccH----HHHHHHHHHHHhcccchhHHHHHHHHHhhCCCcCh-------HH-HHHHHHHhhhccccccc---
Q 044962 319 TNDLKVPFFHH----EIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINA-------SQ-ITKGFGRIIDTVDDLSL--- 383 (726)
Q Consensus 319 lreL~~p~fhh----ElV~~aL~~alE~~~~~~~i~~LLk~l~~~~lit~-------~Q-~~kGF~Rv~~~ldDi~L--- 383 (726)
+=||++||=-+ .+++++-..+|+..-+...++++++...+...-++ +. +..|+.++++.+.+.-.
T Consensus 42 ~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGv 121 (258)
T PRK13111 42 IIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGL 121 (258)
T ss_pred EEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEE
Confidence 35799999766 46899999999988777789999999763322122 33 34488888888877666
Q ss_pred ---cccchhHHHHHHHHHHHhcCCcccccc
Q 044962 384 ---DIPNARGILHSLISKAASEGWLCASSL 410 (726)
Q Consensus 384 ---DvP~A~~~l~~~v~~~~~~g~l~~~~~ 410 (726)
|.|. +-.+.++.+|.+.|+-.-.|.
T Consensus 122 iipDLp~--ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 122 IIPDLPP--EEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred EECCCCH--HHHHHHHHHHHHcCCcEEEEe
Confidence 7774 677788888888777655544
No 28
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=38.73 E-value=1.8e+02 Score=35.30 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHhhhhc-c---cCCcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc--CChHH
Q 044962 428 KLFKMKAQSIIQEYFLSGDILEVSGCLESEK-K---SSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF--LPADD 501 (726)
Q Consensus 428 ~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~-~---L~~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~--l~~~~ 501 (726)
++|.+++.+.|-..|.+.|..==...|.-.- + |.....+..+...++.--.|.++.=||.+-+-+..|. |+.+.
T Consensus 325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~ 404 (690)
T KOG1243|consen 325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN 404 (690)
T ss_pred cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh
Confidence 4499999999999999998765555554311 0 1123455566677778888999999999999999998 88886
Q ss_pred HHHHHHHHHhhccc-----cccCchhhHHHHHHHHHHHHhhCCCCchhHHHhhhccCCCcchHHHHHHHHHHHHhccccc
Q 044962 502 VVNGFVMLIESADD-----TALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSG 576 (726)
Q Consensus 502 i~~gF~~ll~~l~D-----l~lD~P~a~~~la~FiARAV~Dd~l~p~~l~~~~~~~~~~~~~g~~~l~~a~~ll~~~~~~ 576 (726)
+..=..+.|..+.- +.--+-..---+|-+++-.+-+.+|+-+|......-.......|..++.....++...-..
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va 484 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVA 484 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhh
Confidence 55544444444332 1111111112234456666677777777776443332212233455555556666555444
Q ss_pred ccccccccCCCCCCCCCCChHHHHHHHHHHHHHHhhc
Q 044962 577 ERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESG 613 (726)
Q Consensus 577 ~rl~~~WG~g~~~~~~~~~~e~l~~ki~~lL~EYl~~ 613 (726)
.||.-.--+.+. -+...++..-...++.|+.+
T Consensus 485 ~kIlp~l~pl~v-----d~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 485 NKILPSLVPLTV-----DPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred hhcccccccccc-----CcccchhhHHHHHHHHHHhh
Confidence 444332222221 12345566666666666653
No 29
>PLN02591 tryptophan synthase
Probab=38.71 E-value=1e+02 Score=32.82 Aligned_cols=90 Identities=20% Similarity=0.321 Sum_probs=68.1
Q ss_pred hhcCCCCCccH----HHHHHHHHHHHhcccchhHHHHHHHHHhhCCCc-------ChHHHHHHHHHhhhccccccc----
Q 044962 319 TNDLKVPFFHH----EIVKRAVTMAMERRQAEGRLLGLLKEASEEGLI-------NASQITKGFGRIIDTVDDLSL---- 383 (726)
Q Consensus 319 lreL~~p~fhh----ElV~~aL~~alE~~~~~~~i~~LLk~l~~~~li-------t~~Q~~kGF~Rv~~~ldDi~L---- 383 (726)
+=||++||=-+ .+++++-..+|+..-+.+.++++++......-+ -..-+..|+.|++..+.+.-.
T Consensus 32 ~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gvi 111 (250)
T PLN02591 32 VIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLV 111 (250)
T ss_pred EEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEE
Confidence 46899999877 579999999999887888899999997643111 112345599998888877666
Q ss_pred --cccchhHHHHHHHHHHHhcCCcccccc
Q 044962 384 --DIPNARGILHSLISKAASEGWLCASSL 410 (726)
Q Consensus 384 --DvP~A~~~l~~~v~~~~~~g~l~~~~~ 410 (726)
|.|. +-.+.+..+|.+.|+-.-.+.
T Consensus 112 ipDLP~--ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 112 VPDLPL--EETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred eCCCCH--HHHHHHHHHHHHcCCeEEEEe
Confidence 7884 777888888888887666665
No 30
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=35.70 E-value=3.1e+02 Score=28.63 Aligned_cols=135 Identities=20% Similarity=0.193 Sum_probs=77.9
Q ss_pred ccCchhHhHHHHHHHhccCChHHHHHHHHHHHhhccc---c-ccCchhhHHHHHH------------HHHHHHhhCCCC-
Q 044962 479 DRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADD---T-ALDNPVVVEDLAM------------FLARAVVDEVLA- 541 (726)
Q Consensus 479 drk~~eREl~S~LLs~L~l~~~~i~~gF~~ll~~l~D---l-~lD~P~a~~~la~------------FiARAV~Dd~l~- 541 (726)
+++|.-.-+++++||+=+ +-..+..+...|+..+++ + .+|.....+++.. =+||.++++-=.
T Consensus 25 ~~~~pf~lLva~iLSaqt-tD~~vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr~KAk~I~~~~~~l~e~~~g~ 103 (211)
T COG0177 25 DFKDPFELLVAVILSAQT-TDEVVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEKFGGE 103 (211)
T ss_pred CcCCcHHHHHHHHHhccC-chHHHHHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 367777788888888888 666666777777766652 1 2333333333321 146666665222
Q ss_pred -chhHHHhhhccCCCcchHHHHHHHHHHHHhcc------cccccccccccCCCCCCCCCCChHHHHHHHHHHH-HHHhhc
Q 044962 542 -PQHLEEIGSQFLGAESIGSKVLQMAKSLLNAR------LSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLL-EEYESG 613 (726)
Q Consensus 542 -p~~l~~~~~~~~~~~~~g~~~l~~a~~ll~~~------~~~~rl~~~WG~g~~~~~~~~~~e~l~~ki~~lL-~EYl~~ 613 (726)
|...++.. .+| ..|+.+.+-+-+.--.. ....|+-|.||-.. +.+.+++++....++ +||..
T Consensus 104 vP~~~~eL~-~LP---GVGrKTAnvVL~~a~g~p~i~VDTHV~Rvs~R~gl~~-----~~~p~~ve~~L~~~iP~~~~~- 173 (211)
T COG0177 104 VPDTREELL-SLP---GVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLGLVP-----GKTPEEVEEALMKLIPKELWT- 173 (211)
T ss_pred CCchHHHHH-hCC---CcchHHHHHHHHhhcCCCcccccchHHHHHHHhCCCC-----CCCHHHHHHHHHHHCCHHHHH-
Confidence 34443332 334 34555544333331111 34468899999555 356788888777777 55544
Q ss_pred CCHHHHHHHHHhhCCCCchHHHHHHHH
Q 044962 614 GDVREARRCIKELGMPFFHHEIVKKAL 640 (726)
Q Consensus 614 ~D~~EA~~Cl~EL~~p~fhhelV~~ai 640 (726)
++||-+|.-+=
T Consensus 174 ----------------~~h~~lI~~GR 184 (211)
T COG0177 174 ----------------DLHHWLILHGR 184 (211)
T ss_pred ----------------HHHHHHHHhhh
Confidence 67888877553
No 31
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.47 E-value=3.3e+02 Score=29.18 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred cchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCCcccccCC
Q 044962 344 QAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLE 423 (726)
Q Consensus 344 ~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~k~~~~ 423 (726)
..++.+.+|+..+....+=..+++.-|+ ++..+=|+. +.+++. -+++++..|.++.++. + .
T Consensus 146 ~~Re~vi~~f~~ll~~~l~~~~~~~~~~--Lv~~~~dL~-----~~EL~~-~I~~~f~~~lVd~~~i-~----------~ 206 (249)
T PF06685_consen 146 ISREEVIQYFRELLNYFLERNPSFLWGS--LVADICDLY-----PEELLP-EIRKAFEDGLVDPSFI-D----------L 206 (249)
T ss_pred CCHHHHHHHHHHHHHHHhccCchHHHHH--HHHHHHhcC-----HHHhHH-HHHHHHHcCCCCcccc-C----------H
Confidence 3467788888888776666666664432 334444443 444444 4788899999999885 2 1
Q ss_pred CccHHHHHHHHHHHHHHHHccCCHHHHHHHhhh
Q 044962 424 DTDTKLFKMKAQSIIQEYFLSGDILEVSGCLES 456 (726)
Q Consensus 424 ~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e 456 (726)
..-++.+....+..++.++.+ ..-.-..+++
T Consensus 207 e~ve~~l~~~~e~~~~~~~~~--~~lI~d~~~e 237 (249)
T PF06685_consen 207 EDVEEALAREKERVLPRLRKS--YELINDTIEE 237 (249)
T ss_pred HHHHHHHhhcHHHHHHHHHhc--chhHHHHHHH
Confidence 334466666667777777766 3333334444
No 32
>PF12854 PPR_1: PPR repeat
Probab=34.24 E-value=56 Score=23.59 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhh
Q 044962 603 IGRLLEEYESGGDVREARRCIKEL 626 (726)
Q Consensus 603 i~~lL~EYl~~~D~~EA~~Cl~EL 626 (726)
-+.+|.-|...|+++||.+.+.++
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 468999999999999999999886
No 33
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=34.10 E-value=1.3e+02 Score=25.85 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHhhc---CCHHHHHHHHHhhCCCCchHHHHHHHH
Q 044962 595 AVEDVKDKIGRLLEEYESG---GDVREARRCIKELGMPFFHHEIVKKAL 640 (726)
Q Consensus 595 ~~e~l~~ki~~lL~EYl~~---~D~~EA~~Cl~EL~~p~fhhelV~~ai 640 (726)
|-.+.++.|...+.|--.. .|++|-..|.-.||.|..|+-+|.-..
T Consensus 10 Py~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~ 58 (66)
T TIGR01568 10 PYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFV 58 (66)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 5688999999999887543 469999999999999987766665543
No 34
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=33.39 E-value=40 Score=32.18 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhcC-CHHHHHHHHHhhCC
Q 044962 598 DVKDKIGRLLEEYESGG-DVREARRCIKELGM 628 (726)
Q Consensus 598 ~l~~ki~~lL~EYl~~~-D~~EA~~Cl~EL~~ 628 (726)
-+++-...+++.|-++. +-+||.+|+++|..
T Consensus 41 mFr~D~e~Il~~~~~Gdi~eEEA~~ll~eL~~ 72 (127)
T PF14591_consen 41 MFRSDLEDILEDYKSGDIDEEEALQLLDELKS 72 (127)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 36677888888888777 88999999999974
No 35
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=33.28 E-value=62 Score=23.27 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHH
Q 044962 652 WGLLKECSDSGHITMNQMMKGFGRVE 677 (726)
Q Consensus 652 ~~LL~~L~~~~~it~~q~~~Gf~rv~ 677 (726)
+.-|+.|+.+|+||.+.|.+--.+++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45689999999999999988766654
No 36
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=30.93 E-value=37 Score=31.50 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccc---chHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccccccccccchHHHH
Q 044962 634 EIVKKALVSVIEKK---NERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQF 694 (726)
Q Consensus 634 elV~~ai~~~lE~~---~e~~~~LL~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDvP~A~~~l 694 (726)
--||+.+...-+++ +++++.|+-=..=+.++|-+++.++|..+.+...|-..++..||.+|
T Consensus 42 NYvK~~li~~P~kKkYsr~qla~li~I~~lK~vlsi~dI~~ll~~~~~~~~~~~~~~~~~Y~~f 105 (105)
T PF08876_consen 42 NYVKRGLIPPPIKKKYSREQLAYLIVISILKQVLSIDDIKKLLDLQFNNYEDDEISLEDAYNYF 105 (105)
T ss_pred HHHhcccCCCcccCccCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccccCCCHHHHHhcC
Confidence 34566665555555 37888888888888999999999999999999877778888888654
No 37
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=29.31 E-value=2.5e+02 Score=28.50 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCC---HHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-hCCCChHHHHHHHH
Q 044962 133 KKATIIVEEYFATDD---VLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALY-ADAIDPPQVYRGFI 208 (726)
Q Consensus 133 kk~~~ii~EYf~~~D---~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~-~~vls~~~i~~Gf~ 208 (726)
|++...++-.|+..+ .+-.+..++.+-...-.+.+.-+.+-.|+..-+.=+..++.+|+.|. +++.....+-+||-
T Consensus 74 k~~~~a~~~Cf~~~~vf~~evla~~l~ql~~~~~lP~LfmRTviq~~~~~p~L~~FV~~iL~rLi~kqvW~~~~lW~Gfi 153 (183)
T PF12295_consen 74 KKIIEALDLCFSMRDVFTQEVLASALQQLVEQPPLPLLFMRTVIQALQKYPSLRSFVSNILSRLIQKQVWKNKKLWEGFI 153 (183)
T ss_pred HHHHHHHHHHHcccccCCHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Confidence 444777888888876 23344456665555667777777777889999999999999999999 68999999999999
Q ss_pred HHHhhhhh
Q 044962 209 KLVESADD 216 (726)
Q Consensus 209 ~lLe~l~D 216 (726)
+-.+.+--
T Consensus 154 ~C~~~~~p 161 (183)
T PF12295_consen 154 KCAKRLKP 161 (183)
T ss_pred HHHHHhhh
Confidence 98777643
No 38
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.94 E-value=1.2e+03 Score=28.80 Aligned_cols=233 Identities=16% Similarity=0.100 Sum_probs=134.3
Q ss_pred HHHHHccCCHHHHHHHhhhhcccCCc-chhHHHHHHHHHHhhccCchhHhHHHHHHHhcc-----------CChHHHHHH
Q 044962 438 IQEYFLSGDILEVSGCLESEKKSSLN-EVNAIFVKRLITLAMDRKNREKEMASVLLSSLF-----------LPADDVVNG 505 (726)
Q Consensus 438 i~EYf~~~D~~Ev~~~l~e~~~L~~~-~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~-----------l~~~~i~~g 505 (726)
+-.|+..+|..==..+++.+..|.-. ..+....++++++.=|-...-|--|-+|++-+- =....+-.+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 67889999887222233222112222 455577788899888888888988888887654 123456789
Q ss_pred HHHHHhhccccccCch-hhHHHHHHHHHHHHhhCCCCchhHHHhh-hccCCCcchHHHHHHHHHHHHhcccccccccccc
Q 044962 506 FVMLIESADDTALDNP-VVVEDLAMFLARAVVDEVLAPQHLEEIG-SQFLGAESIGSKVLQMAKSLLNARLSGERILRCW 583 (726)
Q Consensus 506 F~~ll~~l~Dl~lD~P-~a~~~la~FiARAV~Dd~l~p~~l~~~~-~~~~~~~~~g~~~l~~a~~ll~~~~~~~rl~~~W 583 (726)
|..+++-+.|+.++|- .|...||.|= .|.++++ ..-. .++.+...--+-|=.+++.+.+ +.++.+ -+-|
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~--~vSee~i-----~QTLdKKlms~lRRkr~ahkrpk~l~s-~GewSs-Gk~~ 353 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFE--QVSEEII-----QQTLDKKLMSRLRRKRTAHKRPKALYS-SGEWSS-GKEW 353 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHH--HhHHHHH-----HHHHHHHHhhhhhhhhhcccchHHHHh-cCCccc-Cccc
Confidence 9999999999999974 5777777773 3333332 2211 1111000001111122233332 223333 4567
Q ss_pred cCCCCCCCCCCChHHHHHH-------------HHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccch-
Q 044962 584 GGGGGSSRPGWAVEDVKDK-------------IGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNE- 649 (726)
Q Consensus 584 G~g~~~~~~~~~~e~l~~k-------------i~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~e- 649 (726)
|...+ .|+.... |.-+=+||+..+--.-|.-|---...|.|--.-++-.+.|.-+.-.+
T Consensus 354 ~advp-------see~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 354 NADVP-------SEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVV 426 (823)
T ss_pred cccCc-------hhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHH
Confidence 65442 2333332 33445789888776666677777777998766555554443222221
Q ss_pred H--HHHHHHHHHhCCCCCHHHHHHHHHHHHhccccccccccch
Q 044962 650 R--LWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDA 690 (726)
Q Consensus 650 ~--~~~LL~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDvP~A 690 (726)
| ...-|+.+...+.|.++|+.. +++.|+|-..||-.|
T Consensus 427 RL~ai~aL~~Is~~l~i~eeql~~----il~~L~D~s~dvRe~ 465 (823)
T KOG2259|consen 427 RLKAIFALTMISVHLAIREEQLRQ----ILESLEDRSVDVREA 465 (823)
T ss_pred HHHHHHHHHHHHHHheecHHHHHH----HHHHHHhcCHHHHHH
Confidence 2 234466677778888888754 666777777666433
No 39
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=27.66 E-value=3.1e+02 Score=26.58 Aligned_cols=117 Identities=14% Similarity=0.039 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCCCC---ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHh-CC-CChHHHHHHH
Q 044962 133 KKATIIVEEYFATDDVLSAANELRELRKPN---YNYYFVKRLISIAMDRHDKEKEMAAVLLSALYA-DA-IDPPQVYRGF 207 (726)
Q Consensus 133 kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~---~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~-~v-ls~~~i~~Gf 207 (726)
|+++.++...= .++.+..+..+..+.... ....+++.+++.|.+.. .-..+.++|...|+. .. -=...+...+
T Consensus 2 r~v~~~lnklt-~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLT-PSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCS-STTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCC-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 55666666655 777778888777766544 66677777777666655 455677777777763 11 0112333333
Q ss_pred HHHHhh------hhhhhccccchHHHHHHHHHHHHHcCCCChHHHHHHhh
Q 044962 208 IKLVES------ADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMA 251 (726)
Q Consensus 208 ~~lLe~------l~DL~lDiP~a~~~La~fiaraV~d~~lp~~fl~~~~~ 251 (726)
..-++. .++..--.-.-..-+..|||....-++++...+-....
T Consensus 80 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~ 129 (209)
T PF02854_consen 80 QEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILR 129 (209)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHH
Confidence 333333 33333333344556788999999999999977766443
No 40
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=27.24 E-value=79 Score=21.05 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhhC
Q 044962 604 GRLLEEYESGGDVREARRCIKELG 627 (726)
Q Consensus 604 ~~lL~EYl~~~D~~EA~~Cl~EL~ 627 (726)
+.+|.-|...|+.++|.+.++++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 578899999999999999998875
No 41
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=26.85 E-value=89 Score=21.05 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhhCC
Q 044962 604 GRLLEEYESGGDVREARRCIKELGM 628 (726)
Q Consensus 604 ~~lL~EYl~~~D~~EA~~Cl~EL~~ 628 (726)
+.+|.=|...|+.++|.+.++++..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5688889999999999999988753
No 42
>PLN02591 tryptophan synthase
Probab=26.75 E-value=1.9e+02 Score=30.80 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=66.8
Q ss_pred HHhhCCCCchH----HHHHHHHHHHhcccc--hHHHHHHHHHHhCCCCC------HHH-HHHHHHHHHhccccccc----
Q 044962 623 IKELGMPFFHH----EIVKKALVSVIEKKN--ERLWGLLKECSDSGHIT------MNQ-MMKGFGRVEESLDDLAL---- 685 (726)
Q Consensus 623 l~EL~~p~fhh----elV~~ai~~~lE~~~--e~~~~LL~~L~~~~~it------~~q-~~~Gf~rv~e~l~Di~l---- 685 (726)
+=||+.|+-.+ .++.+|-..+|+... +.++++++.+.+.--+. -+. +.-|+.++++.+.+.-+
T Consensus 32 ~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gvi 111 (250)
T PLN02591 32 VIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLV 111 (250)
T ss_pred EEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEE
Confidence 45788887655 699999999999884 57889998887542222 233 44499999999999888
Q ss_pred --cccchHHHHHHHHHHHHHcCCCCcchh
Q 044962 686 --DVPDAKKQFIHYVEKAKTEGWLDSSFW 712 (726)
Q Consensus 686 --DvP~A~~~l~~lv~~~~~~g~l~~~~~ 712 (726)
|+|. +...++...|.+.|+=.-.+.
T Consensus 112 ipDLP~--ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 112 VPDLPL--EETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred eCCCCH--HHHHHHHHHHHHcCCeEEEEe
Confidence 7874 888999999999887655554
No 43
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.18 E-value=1.8e+02 Score=35.44 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccc-cccchhHHHHHHHHHHHhcCCccccccccCCCCcccccCCC
Q 044962 346 EGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSL-DIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLED 424 (726)
Q Consensus 346 ~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~L-DvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~k~~~~~ 424 (726)
...+++|++....+. +|+.+|..+.+...++|.+ -.|.+.-.++. -+.+-.+..+..|-|+.+ .-+
T Consensus 147 ~~iV~~Wle~~~~e~----~~ie~~~~~~~~e~~~~k~knr~~S~~~~~~-------~~~~vt~lDpDAplRe~~--pLd 213 (800)
T KOG1964|consen 147 IQIVVDWLEDAISEQ----PQIEKGLNDKVWERELIKLKNRQGSMFALGI-------PTFGVTNLDPDAPLREDA--PLD 213 (800)
T ss_pred HHHHHHHHHhhhcCC----cchhhhccceeeeccchhhhccccchhhcCC-------CCcccccCCCCCCCCCCC--CCc
Confidence 456899999765544 7999999999999999998 77765332221 223334555555666666 235
Q ss_pred ccHHHHHHHHHHHHHHHHccCCHHHHHHHhhh
Q 044962 425 TDTKLFKMKAQSIIQEYFLSGDILEVSGCLES 456 (726)
Q Consensus 425 ~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e 456 (726)
...+++..++-..+=+.+-+|-++|+.+..+.
T Consensus 214 ~~D~e~e~~~~k~~F~LIRaG~~deal~Lck~ 245 (800)
T KOG1964|consen 214 KLDQEDEQRFFKYIFELIRAGETDEALELCKR 245 (800)
T ss_pred hhhhHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 55688888899999999999999999887765
No 44
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=23.82 E-value=1.5e+03 Score=28.20 Aligned_cols=201 Identities=19% Similarity=0.262 Sum_probs=112.0
Q ss_pred ChHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhhhhhhhcc----------------cc-chHHHHHHHHHHHHHcCC
Q 044962 179 HDKEKEMAAVLLSALYA-DAIDPPQVYRGFIKLVESADDLIVD----------------IP-DTVDVLALFIARAVVDDI 240 (726)
Q Consensus 179 k~~eRE~~s~LLs~L~~-~vls~~~i~~Gf~~lLe~l~DL~lD----------------iP-~a~~~La~fiaraV~d~~ 240 (726)
++++..-+..+|++||- ++++..=|+.=+..+.+++-...+. =| -..+++-++-..+-.-+.
T Consensus 420 ~~K~~~Nl~~~l~ylynF~ivs~~LiydiI~kl~~~l~e~~ve~ll~ii~~~G~~LRkDDp~alk~~i~eiq~~a~~a~~ 499 (822)
T KOG2141|consen 420 KDKSLNNIVLFLSYLYNFGIVSCSLIYDIIRKLAENLNETNVEALLTIIANCGFSLRKDDPLALKDIITEIQSKAASAKI 499 (822)
T ss_pred ccchhhhHHHHHHHHHHhhcccHHHHHHHHHHHHhchhhhhHHHHHHHHHHccchhcCCChHHHHHHHHHHHHHhhcCCc
Confidence 36667778899999995 9999999999999888888765432 11 112222222222211111
Q ss_pred C--C--hHHHHHHhhhC--------CCCchh-HHHHHHHHhhhhccc---------------chHHHHHHHhCCCCCCch
Q 044962 241 L--P--PAFLKKQMAAL--------PKESKG-IEVLKRAEKGYLEAP---------------LHAEIIERRWGGSKNKTV 292 (726)
Q Consensus 241 l--p--~~fl~~~~~~~--------~~~~~g-~~~L~~a~k~lL~~~---------------~~~~~v~~~Wgg~~~~~v 292 (726)
= . +.|+-+....+ |..... ++.|+..-|.+++.. .+++..++-|--|..|..
T Consensus 500 s~~~pR~rFmleti~aLKnN~~kki~~~d~e~ve~lrk~~k~l~~~~~s~~~~~l~vTledll~ae~kGrWWlVGsaw~g 579 (822)
T KOG2141|consen 500 SAISPRLRFMLETISALKNNKLKKIPYADPERVENLRKLKKALGSSASSSVSLPLSVTLEDLLHAEQKGRWWLVGSAWRG 579 (822)
T ss_pred cccchHHHHHHHHHHHHhcCCCcCCCcCChHHHHHHHHHHHHHHhccchhhhccccccHHHhhChHhcCceEEecchhcC
Confidence 1 1 13433322221 211222 466665545554432 122333444654444421
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhhCCCcChHHHHHHHH
Q 044962 293 EDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFG 372 (726)
Q Consensus 293 ee~k~~i~~lL~EY~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~~~lit~~Q~~kGF~ 372 (726)
..++..+.+.+....--+... -.||..+++-|-..-|... .+..|+. .++|+++++.+|.
T Consensus 580 ----------~~~~~~s~~~~~d~~~~k~~~-gs~~~kmL~lArkqrMNTd-iRr~IFc--------sImsaeDyiDAFE 639 (822)
T KOG2141|consen 580 ----------NEQFMGSINTASDSAKSKKAE-GSFADKMLELARKQRMNTD-IRRAIFC--------SIMSAEDYIDAFE 639 (822)
T ss_pred ----------CcccccccchHhHHhhhhccc-CCccHHHHHHHHHhhcchH-hhhhhee--------eeecchHHHHHHH
Confidence 111333344444433333333 5688999887777777554 2334543 5899999999999
Q ss_pred Hhhhccccccccccch--hHHHHHHHHHHHhcCCc
Q 044962 373 RIIDTVDDLSLDIPNA--RGILHSLISKAASEGWL 405 (726)
Q Consensus 373 Rv~~~ldDi~LDvP~A--~~~l~~~v~~~~~~g~l 405 (726)
|++ .|+.++= +++.--++.+|.++...
T Consensus 640 klL------kL~LK~~Q~rEI~~VllhC~l~EK~y 668 (822)
T KOG2141|consen 640 KLL------KLSLKGKQEREIARVLLHCCLNEKTY 668 (822)
T ss_pred HHH------hccCCCcchHHHHHHHHHHHhhhccc
Confidence 984 4666766 77777777777555443
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=22.58 E-value=2.7e+02 Score=25.28 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=51.2
Q ss_pred CcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc-CChHHHHHHHHHHHhhccccccCchhhHHHHHHHHHHHH
Q 044962 462 LNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF-LPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAV 535 (726)
Q Consensus 462 ~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~-l~~~~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV 535 (726)
+..+...+++-++...=|...+-|..+..-|-.+. ...+++..=|..+++.+-.+.-|.=.-...-|.++-|.+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 34667778888887777788899999999888887 666666666666666666666665444444455555544
No 46
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=21.56 E-value=3.1e+02 Score=29.12 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC----ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCCh
Q 044962 125 AGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPN----YNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDP 200 (726)
Q Consensus 125 ~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~----~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~ 200 (726)
.-+..|+..++.+-|++||...|-.+.+..|-.+..-. |.+++.+.- .|+||++.-...+|.-|
T Consensus 30 p~~~ReI~~~~~~~i~~~~~~kd~~~li~~lL~~~lfPikdsYvayLkrdk--sAlernP~Ti~ri~g~l---------- 97 (261)
T PF06300_consen 30 PNSIREIDEKVWSKIEEAFKNKDSTKLIKSLLNLDLFPIKDSYVAYLKRDK--SALERNPETINRICGRL---------- 97 (261)
T ss_pred CCccccCCHHHHHHHHHHHhccchHHHHHHHHhcccCccCcchHHHHHhhH--HHHhcCcHHHHHHHHHH----------
Confidence 35677888889999999999999999988887776543 555443322 38888876544444333
Q ss_pred HHHHHHHHHHHhhhhhhhccccc-hHHHHHHHHHHHHHcCCC
Q 044962 201 PQVYRGFIKLVESADDLIVDIPD-TVDVLALFIARAVVDDIL 241 (726)
Q Consensus 201 ~~i~~Gf~~lLe~l~DL~lDiP~-a~~~La~fiaraV~d~~l 241 (726)
.+.|+.++++.+. .|+ .--.+|=+.-+-+-.+.+
T Consensus 98 --~emGl~~i~ek~t-----~PkEtNRQIGPlFk~W~~~~~l 132 (261)
T PF06300_consen 98 --YEMGLDKIYEKCT-----EPKETNRQIGPLFKNWINSGAL 132 (261)
T ss_pred --HHHhHHHHHHHcC-----CCchhcchhhHHHHHHHhcccc
Confidence 3558888887764 344 334677777777766543
No 47
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=21.17 E-value=3.9e+02 Score=28.34 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhhCCC----C---chHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 044962 605 RLLEEYESGGDVREARRCIKELGMP----F---FHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVE 677 (726)
Q Consensus 605 ~lL~EYl~~~D~~EA~~Cl~EL~~p----~---fhhelV~~ai~~~lE~~~e~~~~LL~~L~~~~~it~~q~~~Gf~rv~ 677 (726)
..|.+...+|++++|..-+..|+.- + |.|..=-+.|.+.=+...+.+++.++.......-..-+.+.+|+|++
T Consensus 69 ~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l 148 (228)
T KOG2659|consen 69 LQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTL 148 (228)
T ss_pred HHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 3456668899999999999999741 2 23444455566666666677777777655444444448999999998
Q ss_pred hcc-ccccccccchH-------HHHHHHHHHHHHc
Q 044962 678 ESL-DDLALDVPDAK-------KQFIHYVEKAKTE 704 (726)
Q Consensus 678 e~l-~Di~lDvP~A~-------~~l~~lv~~~~~~ 704 (726)
..| -|..=+.|.++ ..++..|..|+.+
T Consensus 149 ~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL~ 183 (228)
T KOG2659|consen 149 ALLVFELSQESPSAELLSQSLRQKVASEVNSAILA 183 (228)
T ss_pred HHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 34444567776 5566677766654
No 48
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.76 E-value=2.2e+02 Score=25.15 Aligned_cols=35 Identities=6% Similarity=0.014 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhH
Q 044962 431 KMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNA 467 (726)
Q Consensus 431 kk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~ 467 (726)
+..+.-.|++|+.+++++..+..|... |+.|...+
T Consensus 21 r~~~~~~L~~Y~~~~~Vd~LV~~L~~v--LdtPaK~~ 55 (78)
T cd07347 21 REQVTRALERYHQERNVDDLVRDLYLV--LDTPAKLP 55 (78)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH--cCcHhHHH
Confidence 666788999999999999999999885 45565543
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=20.61 E-value=5e+02 Score=23.51 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHc
Q 044962 160 KPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVD 238 (726)
Q Consensus 160 ~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d 238 (726)
...|...++.-++..-=|...+-|..++.-|-.+.+ +..+++..=|..+++.+-.+.-|.=.-...-|+++.|.+.|
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k--~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK--VARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence 345888888888888888899999999998888863 23456677777788777777777777777778888877654
No 50
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=20.56 E-value=52 Score=30.92 Aligned_cols=70 Identities=17% Similarity=0.370 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHhhcC---CHHHHHHHHHhh-------CCCCchHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC
Q 044962 596 VEDVKDKIGRLLEEYESGG---DVREARRCIKEL-------GMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHIT 665 (726)
Q Consensus 596 ~e~l~~ki~~lL~EYl~~~---D~~EA~~Cl~EL-------~~p~fhhelV~~ai~~~lE~~~e~~~~LL~~L~~~~~it 665 (726)
++++.++|...|.+.+... ....|..||+-| +.|..+..|+++.=...+.+....+|.++.. -+-|+||
T Consensus 20 ~~~A~~qM~~vI~~Lv~~s~~~~y~kalecl~~lR~~~i~~~ep~~yN~Fl~~LK~~~~~~~~~~FW~~i~~-~~l~LI~ 98 (120)
T PF08785_consen 20 FQKAIQQMKNVIEQLVSDSGDQNYDKALECLRALREECIEEEEPDEYNDFLRKLKKKLLSKDRRDFWELIVS-KKLGLIS 98 (120)
T ss_dssp CCHHHHHHHHHHHHHHHCSHCHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCTTTCHHHHCCCC-CT-SS-S
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-cCCCccc
Confidence 4555555666665555544 788999999855 5577777777777666666655555655443 3444554
Q ss_pred H
Q 044962 666 M 666 (726)
Q Consensus 666 ~ 666 (726)
.
T Consensus 99 ~ 99 (120)
T PF08785_consen 99 K 99 (120)
T ss_dssp S
T ss_pred H
Confidence 4
No 51
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=20.45 E-value=1.3e+03 Score=26.22 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=49.7
Q ss_pred chhHHHHHHHHhhh-----hcccchHHHHHHHhCCCC--------CCchHHHHHHHHHHHHHHHhcC------ChhhHhh
Q 044962 257 SKGIEVLKRAEKGY-----LEAPLHAEIIERRWGGSK--------NKTVEDVKVRINDLLIEYVVSG------DKKEAFR 317 (726)
Q Consensus 257 ~~g~~~L~~a~k~l-----L~~~~~~~~v~~~Wgg~~--------~~~vee~k~~i~~lL~EY~~sg------D~~EA~r 317 (726)
..|.++|.++.+.+ +...| ...|.|+| ..|..--..+|.+...+..+.+ ..+||.+
T Consensus 252 ~~G~~il~~s~~~mq~a~eIa~~H-----HErwDGsGYPdgLkGd~IPl~arI~aiADvfDAL~s~r~Yk~~~~~~eA~~ 326 (360)
T COG3437 252 ILGAEILKSSERLMQVAAEIARHH-----HERWDGSGYPDGLKGDEIPLSARIVAIADVFDALVSGRPYKEAMSTEEALE 326 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hhccCCCCCCCCCCccccchhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 45667777775311 11222 45698665 2466555666666666666654 5689999
Q ss_pred hhhcCCCCCccHHHHHHHHH
Q 044962 318 CTNDLKVPFFHHEIVKRAVT 337 (726)
Q Consensus 318 clreL~~p~fhhElV~~aL~ 337 (726)
.++...--+|-|++|+..+.
T Consensus 327 ~i~~~~Gr~fdP~lVeaFi~ 346 (360)
T COG3437 327 IIRAQSGRLFDPKLVEAFIQ 346 (360)
T ss_pred HHHHhcCCcCCHHHHHHHHH
Confidence 99888888999999877664
No 52
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.40 E-value=2.5e+02 Score=30.01 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=65.3
Q ss_pred HhhCCCCchH----HHHHHHHHHHhcccc--hHHHHHHHHHHhCCCCCH-------HHHHH-HHHHHHhccccccc----
Q 044962 624 KELGMPFFHH----EIVKKALVSVIEKKN--ERLWGLLKECSDSGHITM-------NQMMK-GFGRVEESLDDLAL---- 685 (726)
Q Consensus 624 ~EL~~p~fhh----elV~~ai~~~lE~~~--e~~~~LL~~L~~~~~it~-------~q~~~-Gf~rv~e~l~Di~l---- 685 (726)
=||+.|+-.+ .++.+|-..+|+..- +.+.++++.+.+...=++ +.+.+ |++++++.+-+.-+
T Consensus 43 iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvi 122 (258)
T PRK13111 43 IELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLI 122 (258)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEE
Confidence 4678886544 689999999999884 468888888874321122 45445 99999999999887
Q ss_pred --cccchHHHHHHHHHHHHHcCCCCcchhh
Q 044962 686 --DVPDAKKQFIHYVEKAKTEGWLDSSFWF 713 (726)
Q Consensus 686 --DvP~A~~~l~~lv~~~~~~g~l~~~~~~ 713 (726)
|+|. +...+++..|.+.|+-.-.|..
T Consensus 123 ipDLp~--ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 123 IPDLPP--EEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred ECCCCH--HHHHHHHHHHHHcCCcEEEEeC
Confidence 8884 7888999999998865554443
No 53
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.02 E-value=2e+02 Score=25.40 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-hCCCCCh
Q 044962 126 GDLDEFKKKATIIVEEYFATDDVLSAANELRE-LRKPNYN 164 (726)
Q Consensus 126 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~E-L~~p~~~ 164 (726)
+++.| +..+...|++|+.++++++.+..+.. |+.|.-.
T Consensus 16 L~~~E-r~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~ 54 (78)
T cd07347 16 LTDAE-REQVTRALERYHQERNVDDLVRDLYLVLDTPAKL 54 (78)
T ss_pred CCHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHH
Confidence 45566 55677779999999999999999988 6666543
Done!