Query 044962
Match_columns 726
No_of_seqs 355 out of 560
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eiq_C Programmed cell death p 100.0 7.1E-83 2.4E-87 691.2 23.7 338 80-419 2-342 (358)
2 3eiq_C Programmed cell death p 100.0 4.7E-71 1.6E-75 598.7 27.5 286 423-717 46-338 (358)
3 2zu6_B Programmed cell death p 100.0 1.8E-70 6.2E-75 584.4 26.5 278 429-715 1-285 (307)
4 2zu6_B Programmed cell death p 100.0 6.4E-68 2.2E-72 564.8 21.4 288 130-419 1-291 (307)
5 2rg8_A Programmed cell death p 100.0 3.5E-41 1.2E-45 329.4 16.6 163 124-288 2-164 (165)
6 2rg8_A Programmed cell death p 100.0 8.9E-41 3E-45 326.5 15.5 160 424-588 3-165 (165)
7 3l6a_A Eukaryotic translation 100.0 6.5E-33 2.2E-37 302.0 24.3 281 126-445 6-290 (364)
8 2nsz_A Programmed cell death p 100.0 1E-32 3.5E-37 259.2 12.5 123 594-716 1-127 (129)
9 1ug3_A EIF4GI, eukaryotic prot 100.0 9.2E-32 3.1E-36 290.5 15.1 316 123-504 2-330 (339)
10 2ion_A PDCD4, programmed cell 100.0 1.3E-31 4.3E-36 258.5 12.4 123 593-715 2-128 (152)
11 2nsz_A Programmed cell death p 100.0 1.4E-30 4.7E-35 244.8 9.6 127 290-416 1-129 (129)
12 2ion_A PDCD4, programmed cell 100.0 2.2E-30 7.7E-35 249.8 9.5 132 288-419 1-136 (152)
13 1ug3_A EIF4GI, eukaryotic prot 99.9 1.6E-24 5.6E-29 233.9 17.6 275 424-710 4-326 (339)
14 3l6a_A Eukaryotic translation 99.9 3.8E-24 1.3E-28 233.1 16.7 271 424-710 5-331 (364)
15 3d3m_A Eukaryotic translation 88.0 2.7 9.3E-05 40.3 10.3 134 332-507 4-142 (168)
16 3kh1_A Predicted metal-depende 64.5 34 0.0012 33.8 10.1 81 597-708 113-199 (200)
17 1w53_A Phosphoserine phosphata 55.8 22 0.00076 30.5 6.0 70 426-512 3-76 (84)
18 3kh1_A Predicted metal-depende 46.3 1E+02 0.0035 30.3 10.1 81 293-406 113-199 (200)
19 2lmd_A Prospero homeobox prote 39.9 72 0.0025 30.3 7.2 97 332-443 22-131 (174)
20 4g26_A Pentatricopeptide repea 34.7 36 0.0012 37.7 5.3 74 602-675 142-222 (501)
21 1mij_A Protein prospero; homeo 32.7 68 0.0023 29.9 5.7 71 362-443 39-118 (152)
22 3s4w_B Protein FACD2, fanconi 28.9 9.7E+02 0.033 30.1 17.6 180 490-706 311-511 (1323)
23 4b8b_A General negative regula 24.2 3.6E+02 0.012 30.9 10.9 89 128-216 444-543 (603)
24 1bh9_B TAFII28; histone fold, 24.1 1.5E+02 0.005 25.6 6.0 64 432-511 20-84 (89)
25 2j6y_A Phosphoserine phosphata 24.0 1.5E+02 0.0051 26.7 6.2 22 426-447 3-24 (111)
26 4g26_A Pentatricopeptide repea 21.8 2.4E+02 0.0083 31.0 9.0 70 602-671 107-179 (501)
27 3s4w_B Protein FACD2, fanconi 21.6 1.1E+03 0.037 29.6 15.3 69 183-251 306-388 (1323)
No 1
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=100.00 E-value=7.1e-83 Score=691.16 Aligned_cols=338 Identities=29% Similarity=0.434 Sum_probs=267.1
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 044962 80 PKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELR 159 (726)
Q Consensus 80 ~kk~G~ggK~~wg~~~~~~~~~~~D~~DPnyd~ee~~~~~~~~~~~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~ 159 (726)
|.|+|+|||||||++++.+++..+|++||||||+++..+..+.+|++|++||+|++++||+|||+++|++||++||+||+
T Consensus 2 ~~~~~~~gk~~wg~~~~~~~~~~~d~~dpnyd~~~~~~~~~~~~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 2 PLGSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCCCcCcCcccCCCccCCCCCCCCCCceeecCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 77899999999999998887788999999999955446667778999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHcC
Q 044962 160 KPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDD 239 (726)
Q Consensus 160 ~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d~ 239 (726)
+|.|++.||+++|++||||+++||||+|+||++||++++|++||.+||.++|++++|+++|+|+||+|||.||||||+||
T Consensus 82 ~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~ 161 (358)
T 3eiq_C 82 LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 161 (358)
T ss_dssp CCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHHhC-CCCCCchHHHHHHHHHHHHHHHhcCChhhHhhh
Q 044962 240 ILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWG-GSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRC 318 (726)
Q Consensus 240 ~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~Wg-g~~~~~vee~k~~i~~lL~EY~~sgD~~EA~rc 318 (726)
+|||+||.++...+ .+..|.++|++|. ++|+++|+.+|++|+|| |++.+|+++++++|+.+|+||+.++|++||++|
T Consensus 162 ~l~~~~l~~~~~~~-~~~~~~~~l~~a~-~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~c 239 (358)
T 3eiq_C 162 ILCNTYIDSYKGTV-DCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHC 239 (358)
T ss_dssp CSCSSTTGGGC----CCHHHHHHHHHHH-HHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCHHHHHHHhhcc-cchHHHHHHHHHH-HHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 99999999987655 4578889999996 79999999999999999 556679999999999999999999999999999
Q ss_pred hhcCCCCCccHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHH
Q 044962 319 TNDLKVPFFHHEIVKRAVTMAMERR--QAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLI 396 (726)
Q Consensus 319 lreL~~p~fhhElV~~aL~~alE~~--~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v 396 (726)
++||++||||||+|+++|.++||+. ...+.+++||+++..++++|++||.+||.||++.|+||.||||+|+.+|++|+
T Consensus 240 i~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 240 LKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHH
Confidence 9999999999999999999999975 45788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccccccCCCCccc
Q 044962 397 SKAASEGWLCASSLKSLSSEPEK 419 (726)
Q Consensus 397 ~~~~~~g~l~~~~~~~~~~~~~k 419 (726)
.+|+.+|||+.+|+..+|+||||
T Consensus 320 arai~~g~l~~~f~~~~p~r~rk 342 (358)
T 3eiq_C 320 EECFQAGIISKQLRDLCPSRGRK 342 (358)
T ss_dssp HHHHHHTSSCHHHHTTCCCC---
T ss_pred HHHHHCCCCCHHHHHhCcccCCc
Confidence 99999999999999999999999
No 2
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=100.00 E-value=4.7e-71 Score=598.71 Aligned_cols=286 Identities=33% Similarity=0.491 Sum_probs=261.3
Q ss_pred CCccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc---CCh
Q 044962 423 EDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF---LPA 499 (726)
Q Consensus 423 ~~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~---l~~ 499 (726)
+++++++|+|++++||+|||+++|++|++.||++ |+.|.|++.||+++|++|||||++||||+|+||++|| +++
T Consensus 46 p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~e---L~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~ 122 (358)
T 3eiq_C 46 LPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRD---LNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMST 122 (358)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHT---TTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH---hCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCH
Confidence 5778899999999999999999999999999999 8889999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhccccccCchhhHHHHHHHHHHHHhhCCCCchhHHHhhhccCCCcchHHHHHHHHHHHHhcccccccc
Q 044962 500 DDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERI 579 (726)
Q Consensus 500 ~~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV~Dd~l~p~~l~~~~~~~~~~~~~g~~~l~~a~~ll~~~~~~~rl 579 (726)
+||.+||.+||++++|+++|+|+|+++||.||||||+|++|||+||.++...+ .++.|++||+||+++|+++|+.+||
T Consensus 123 ~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~--~~~~~~~~l~~a~~~L~~~~~~~~~ 200 (358)
T 3eiq_C 123 NDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV--DCVQARAALDKATVLLSMSKGGKRK 200 (358)
T ss_dssp HHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC-----CCHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc--cchHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999987665 5789999999999999999999999
Q ss_pred cccccCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc----hHHHHHH
Q 044962 580 LRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN----ERLWGLL 655 (726)
Q Consensus 580 ~~~WG~g~~~~~~~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~----e~~~~LL 655 (726)
+||||+|++ .++++++++||+++|+||++++|++||++||+||++|||||+||+++|+++||+++ +++++||
T Consensus 201 ~~~WG~g~~----~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL 276 (358)
T 3eiq_C 201 DSVWGSGGG----QQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLL 276 (358)
T ss_dssp --CCCCCCS----SSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHhcCCCCC----CccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 999998886 37899999999999999999999999999999999999999999999999999974 4699999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcchhhhhhc
Q 044962 656 KECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKLD 717 (726)
Q Consensus 656 ~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~~~~~~~~ 717 (726)
++|+++|+||++||.+||.||++.++||+||||+||.+|++|+++|+.+|||++.|+...++
T Consensus 277 ~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~p~ 338 (358)
T 3eiq_C 277 KSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPS 338 (358)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTCCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999987653
No 3
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=100.00 E-value=1.8e-70 Score=584.41 Aligned_cols=278 Identities=33% Similarity=0.504 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc---CChHHHHHH
Q 044962 429 LFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF---LPADDVVNG 505 (726)
Q Consensus 429 efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~---l~~~~i~~g 505 (726)
||+|++.+||+|||++||++|++.||++ |+.|.|+++||+++|++|||||++||||+|+||++|| ++++||++|
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~e---l~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~g 77 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRD---LNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKS 77 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHT---TCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHH---hCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5899999999999999999999999999 8889999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhccccccCchhhHHHHHHHHHHHHhhCCCCchhHHHhhhccCCCcchHHHHHHHHHHHHhcccccccccccccC
Q 044962 506 FVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWGG 585 (726)
Q Consensus 506 F~~ll~~l~Dl~lD~P~a~~~la~FiARAV~Dd~l~p~~l~~~~~~~~~~~~~g~~~l~~a~~ll~~~~~~~rl~~~WG~ 585 (726)
|..||++++|+++|+|+|+++||.||||||+||||||+|+.++.... .++.|++++++|+++|+++|+++|++||||+
T Consensus 78 f~~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~--~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~ 155 (307)
T 2zu6_B 78 FDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV--DCVQARAALDKATVLLSMSKGGKRKDSVWGS 155 (307)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTC--CCHHHHHHHHHHHHHHHTCC----CCCSSCC
T ss_pred HHHHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcc--cchHHHHHHHHHHHHhcccccHhHHhhhcCC
Confidence 99999999999999999999999999999999999999999988764 6889999999999999999999999999998
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc----hHHHHHHHHHHhC
Q 044962 586 GGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN----ERLWGLLKECSDS 661 (726)
Q Consensus 586 g~~~~~~~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~----e~~~~LL~~L~~~ 661 (726)
|++ .++++++++||+++|+||+++||++||++||+||++|+|||+||+++|+++||+++ +.+++||++|+++
T Consensus 156 ~~~----~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 156 GGG----QQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp CST----TSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred CCC----CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 885 36899999999999999999999999999999999999999999999999999974 3699999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcchhhhh
Q 044962 662 GHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSK 715 (726)
Q Consensus 662 ~~it~~q~~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~~~~~~ 715 (726)
|+||++||.+||.||++.++|++||||+||.+|++|+++|+.+|||+.+|....
T Consensus 232 ~~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~ 285 (307)
T 2zu6_B 232 STITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 285 (307)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998764
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=100.00 E-value=6.4e-68 Score=564.82 Aligned_cols=288 Identities=28% Similarity=0.449 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 044962 130 EFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIK 209 (726)
Q Consensus 130 e~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~Gf~~ 209 (726)
||+|++++||+|||+++|++||+.|++||++|.|++.||+++|++||||+++||||+|+||++||++++|++||.+||..
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ 80 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDK 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccccchHHHHHHHHHHHHHcCCCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHHhCCC-C
Q 044962 210 LVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGS-K 288 (726)
Q Consensus 210 lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~Wgg~-~ 288 (726)
++++++|+++|+|+||++||.||||||+||+|||+|+.++... +.+..|.++|++|. ++|+++|++++++++||++ +
T Consensus 81 ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~-~~~~~g~~~l~~a~-~~l~~~~~~~~~~~~WG~~~~ 158 (307)
T 2zu6_B 81 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGG 158 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTT-CCCHHHHHHHHHHH-HHHHTCC----CCCSSCCCST
T ss_pred HHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhc-ccchHHHHHHHHHH-HHhcccccHhHHhhhcCCCCC
Confidence 9999999999999999999999999999999999999998875 46789999999996 7999999999999999954 4
Q ss_pred CCchHHHHHHHHHHHHHHHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhCCCcChHH
Q 044962 289 NKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERR--QAEGRLLGLLKEASEEGLINASQ 366 (726)
Q Consensus 289 ~~~vee~k~~i~~lL~EY~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~--~~~~~i~~LLk~l~~~~lit~~Q 366 (726)
.+++++++++|+.+|+||+.+||++||++|++||++|+||||+|++++.++||+. .+.+.+++||+++..++++|++|
T Consensus 159 ~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 159 QQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5699999999999999999999999999999999999999999999999999975 35788999999999999999999
Q ss_pred HHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCCccc
Q 044962 367 ITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEK 419 (726)
Q Consensus 367 ~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~k 419 (726)
|.+||.|+++.||||.||||+|+++|++|+.+|+.+|||+.+|...+|++|+|
T Consensus 239 ~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~~~~~rk 291 (307)
T 2zu6_B 239 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGRK 291 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTSCCC---
T ss_pred HHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCCccccc
Confidence 99999999999999999999999999999999999999999999999999998
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=3.5e-41 Score=329.39 Aligned_cols=163 Identities=26% Similarity=0.357 Sum_probs=145.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHH
Q 044962 124 SAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQV 203 (726)
Q Consensus 124 ~~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i 203 (726)
|++|++||+|++++||+|||+++|++||++|++||++|.|++.||+.+|++||||+++|||++|+||++|+++++|++||
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i 81 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDV 81 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHcCCCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHH
Q 044962 204 YRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERR 283 (726)
Q Consensus 204 ~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~ 283 (726)
.+||..++++++|+++|+|+||++||+||||+|.||++||+|+.+.... +.+..|.+++++|+ ++|+++|+.+|++|+
T Consensus 82 ~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~-~~~~~~~~~l~~a~-~ll~~~~~~~~~~~~ 159 (165)
T 2rg8_A 82 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKAT-VLLSMSKGGKRKDSV 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTT-CCCHHHHHHHHHHH-HHHHTC---------
T ss_pred HHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhc-cCchHHHHHHHHHH-HHHhccccHHHHHhh
Confidence 9999999999999999999999999999999999999999999998887 77889999999997 799999999999999
Q ss_pred hCCCC
Q 044962 284 WGGSK 288 (726)
Q Consensus 284 Wgg~~ 288 (726)
||+|+
T Consensus 160 Wg~g~ 164 (165)
T 2rg8_A 160 WGSGG 164 (165)
T ss_dssp -----
T ss_pred cCCCC
Confidence 99664
No 6
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=8.9e-41 Score=326.50 Aligned_cols=160 Identities=32% Similarity=0.462 Sum_probs=140.7
Q ss_pred CccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc---CChH
Q 044962 424 DTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF---LPAD 500 (726)
Q Consensus 424 ~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~---l~~~ 500 (726)
.+++++|++++.++|+|||+++|++|++.|++| |+.|.|++.||+.+|++|||||++||||+|+||++|| |+++
T Consensus 3 ~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~e---L~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~ 79 (165)
T 2rg8_A 3 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRD---LNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTT 79 (165)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH---hCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHH
Confidence 578899999999999999999999999999999 7789999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhccccccCchhhHHHHHHHHHHHHhhCCCCchhHHHhhhccCCCcchHHHHHHHHHHHHhccccccccc
Q 044962 501 DVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERIL 580 (726)
Q Consensus 501 ~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV~Dd~l~p~~l~~~~~~~~~~~~~g~~~l~~a~~ll~~~~~~~rl~ 580 (726)
||.+||..++++++|+++|+|+|+++||+|+||||+|++|||+|+.++... + .++.|++++++|+++|+++|+.+|++
T Consensus 80 ~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~-~-~~~~~~~~l~~a~~ll~~~~~~~~~~ 157 (165)
T 2rg8_A 80 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-V-DCVQARAALDKATVLLSMSKGGKRKD 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTT-C-CCHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhc-c-CchHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999999999999999999999999999999998877 4 68899999999999999999999999
Q ss_pred ccccCCCC
Q 044962 581 RCWGGGGG 588 (726)
Q Consensus 581 ~~WG~g~~ 588 (726)
||||+|||
T Consensus 158 ~~Wg~g~g 165 (165)
T 2rg8_A 158 SVWGSGGG 165 (165)
T ss_dssp --------
T ss_pred hhcCCCCC
Confidence 99999874
No 7
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-33 Score=302.03 Aligned_cols=281 Identities=19% Similarity=0.264 Sum_probs=207.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHh-CCCChHHH
Q 044962 126 GDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPN-YNYYFVKRLISIAMDRHDKEKEMAAVLLSALYA-DAIDPPQV 203 (726)
Q Consensus 126 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~-~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~-~vls~~~i 203 (726)
-|.+|+.|++++||+|||+++|++||++|++||+.|. |++.||+.+|++||||++.+||++++||++|++ ++||++||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4789999999999999999999999999999999996 999999999999999999999999999999995 99999999
Q ss_pred HHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHcCCCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHH
Q 044962 204 YRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERR 283 (726)
Q Consensus 204 ~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~ 283 (726)
.+||.++++.++|+++|+|+||+|||.|+||+|.||++|++++...... |..+. .+ ..+..++....|...+...
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~---G~~~~-l~-l~vl~~~~k~~G~~~l~~l 160 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES---GTHFP-LF-LLCLQQLAKLQDREWLTEL 160 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG---GTTTT-HH-HHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc---cchHH-HH-HHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999987652 22221 11 1222344456688888999
Q ss_pred hCCCC-CCchHHHHHHHHHHHHHHHhcCChhhHhhhhhcCCCCCccHH-HHHHHHHHHHhcccchhHHHHHHHHHhhCCC
Q 044962 284 WGGSK-NKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHE-IVKRAVTMAMERRQAEGRLLGLLKEASEEGL 361 (726)
Q Consensus 284 Wgg~~-~~~vee~k~~i~~lL~EY~~sgD~~EA~rclreL~~p~fhhE-lV~~aL~~alE~~~~~~~i~~LLk~l~~~~l 361 (726)
|..++ .+ .+.++|- .+..+.....+++-+++++.+. -+++.|...|+.+++.+.|++|++.++++..
T Consensus 161 ~~~sgl~l---------~~FlPe~--~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~ 229 (364)
T 3l6a_A 161 FQQSKVNM---------QKMLPEI--DQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKL 229 (364)
T ss_dssp HHHHTCCS---------GGGSCGG--GCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHH
T ss_pred HHHcCCCH---------HHhCCcc--ccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCccc
Confidence 97332 22 1111110 0111222333444444555553 3788999999888888999999999999999
Q ss_pred cChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCCcccccCCCccHHHHHHHHHHHHHHH
Q 044962 362 INASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEY 441 (726)
Q Consensus 362 it~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~k~~~~~~~~~efkk~~~~ii~EY 441 (726)
+++..|+++++. .++.+++.++-.+..-. ...+.|.|.. ...+....++..++++.|
T Consensus 230 ~~~~~fir~L~t--------------------~v~~~~~~~~~~~~~~~-d~~~~~~k~~--~~~~~~~l~~~~~ll~~~ 286 (364)
T 3l6a_A 230 HVDKGFVNILMT--------------------SFLQYISSEVNPPSDET-DSSSAPSKEQ--LEQEKQLLLSFKPVMQKF 286 (364)
T ss_dssp HTCHHHHHHHHH--------------------HHHHHHHHHHC-----------CCCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH--------------------HHHHHHHHhcccccccc-cccccccHHH--HHHHHHHHHHHHHHHHHH
Confidence 999888888887 45555443211110000 1112333311 223345667778999998
Q ss_pred HccC
Q 044962 442 FLSG 445 (726)
Q Consensus 442 f~~~ 445 (726)
..+.
T Consensus 287 ~~~~ 290 (364)
T 3l6a_A 287 LHDH 290 (364)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 7643
No 8
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.98 E-value=1e-32 Score=259.23 Aligned_cols=123 Identities=34% Similarity=0.556 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc----hHHHHHHHHHHhCCCCCHHHH
Q 044962 594 WAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN----ERLWGLLKECSDSGHITMNQM 669 (726)
Q Consensus 594 ~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~----e~~~~LL~~L~~~~~it~~q~ 669 (726)
+|++++++|++++|+||+++||++||++||+||++|+|||+||+++|+++||+++ +.+++||++|+++|+||++||
T Consensus 1 ~p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 5789999999999999999999999999999999999999999999999999974 369999999999999999999
Q ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcchhhhhh
Q 044962 670 MKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKL 716 (726)
Q Consensus 670 ~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~~~~~~~ 716 (726)
.+||.||++.++|++||||+||++|++|+++|+.+|||+.+|...-+
T Consensus 81 ~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p 127 (129)
T 2nsz_A 81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCP 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCT
T ss_pred HHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCC
Confidence 99999999999999999999999999999999999999999987543
No 9
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.97 E-value=9.2e-32 Score=290.51 Aligned_cols=316 Identities=17% Similarity=0.257 Sum_probs=230.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-hCCCChH
Q 044962 123 KSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALY-ADAIDPP 201 (726)
Q Consensus 123 ~~~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~-~~vls~~ 201 (726)
+|.+|++|++|+++++|+|||+++|++||++|++||+.|.|||.||+.+|+++|||++.+||++++||++|+ +++||++
T Consensus 2 k~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~ 81 (339)
T 1ug3_A 2 KAALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA 81 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH
Confidence 466899999999999999999999999999999999999999999999999999999999999999999999 6999999
Q ss_pred HHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHcCCCCh-HHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHH
Q 044962 202 QVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPP-AFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEII 280 (726)
Q Consensus 202 ~i~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d~~lp~-~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v 280 (726)
||.+||.++++.++|+.+|+|+||.+||.|++|+|.+|++|+ .++......+..++.+..++..+.+ .+...+|..++
T Consensus 82 ~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~-~l~~~~g~~~l 160 (339)
T 1ug3_A 82 QYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILG-LLCKSMGPKKV 160 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHH-HHHHHHCHHHH
T ss_pred HHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHH-HHHHHcCHHHH
Confidence 999999999999999999999999999999999999999999 5555544332234566677766654 56678899999
Q ss_pred HHHhCCCC-CC----ch-HHHHHHHHHHHHHHHhcCChhhHhhhhhcC-CCCCccHHHHHHHHHHHHhcccchhHHHHHH
Q 044962 281 ERRWGGSK-NK----TV-EDVKVRINDLLIEYVVSGDKKEAFRCTNDL-KVPFFHHEIVKRAVTMAMERRQAEGRLLGLL 353 (726)
Q Consensus 281 ~~~Wgg~~-~~----~v-ee~k~~i~~lL~EY~~sgD~~EA~rclreL-~~p~fhhElV~~aL~~alE~~~~~~~i~~LL 353 (726)
.++|+.++ .+ |- +. +.+|+...+++.-...-... +..-.+.+=|++.|...|+.+.+.+.|++|+
T Consensus 161 ~~~~~~s~l~l~~f~P~~~~--------~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i 232 (339)
T 1ug3_A 161 GTLWREAGLSWKEFLPEGQD--------IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWI 232 (339)
T ss_dssp HHHHHHTTCCGGGTSCTTCC--------HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHhCCCchh--------HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999433 22 21 21 33445444332221100000 0000234457888888898888888999999
Q ss_pred HHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCCcccccCCCccHHHHHHH
Q 044962 354 KEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMK 433 (726)
Q Consensus 354 k~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~k~~~~~~~~~efkk~ 433 (726)
+.++.+..++..+|+++.++ .++.+++..+ . .. + ...+..++
T Consensus 233 ~~~~~~~~~~~~~~~~~l~~--------------------a~~~~~~~~~--------~---~~-~------~~~~~l~~ 274 (339)
T 1ug3_A 233 EANLSEQQIVSNTLVRALMT--------------------AVCYSAIIFE--------T---PL-R------VDVAVLKA 274 (339)
T ss_dssp HHHSCHHHHTCHHHHHHHHH--------------------HHHHHTEECS--------S---SC-E------ECHHHHHH
T ss_pred HhcCChhhCChHHHHHHHHH--------------------HHHHHHHhcC--------C---ch-H------HHHHHHHH
Confidence 99999999999888888877 3444432210 0 01 1 11245556
Q ss_pred HHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc----CChHHHHH
Q 044962 434 AQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF----LPADDVVN 504 (726)
Q Consensus 434 ~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~----l~~~~i~~ 504 (726)
..++++.|- .+.+.-+.+|.. +..-++. .+.-+.+...++..|| |+.+.|.+
T Consensus 275 ~~pll~~~~--~~~~~ql~~L~a---lQ~~~~~--------------~~~~~~~l~~~~~~LYd~dVi~Eeail~ 330 (339)
T 1ug3_A 275 RAKLLQKYL--CDEQKELQALYA---LQALVVT--------------LEQPPNLLRMFFDALYDEDVVKEDAFYS 330 (339)
T ss_dssp HHHHHHHHC--CSHHHHHHHHHH---HHHHHHH--------------TTCCTTHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHc--CCcHHHHHHHHH---HHHHHHh--------------ccChHHHHHHHHHHHhCcchhhHHHHHH
Confidence 999999977 345555666655 2211111 1123456677777888 66665543
No 10
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.97 E-value=1.3e-31 Score=258.49 Aligned_cols=123 Identities=34% Similarity=0.559 Sum_probs=117.8
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc----hHHHHHHHHHHhCCCCCHHH
Q 044962 593 GWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN----ERLWGLLKECSDSGHITMNQ 668 (726)
Q Consensus 593 ~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~----e~~~~LL~~L~~~~~it~~q 668 (726)
.+|++++++||+++|+||++++|++||++||+||++|+|||+||+++|+++||+++ +.+++||++|+++|+||++|
T Consensus 2 ~~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 2 QQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred CChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 36899999999999999999999999999999999999999999999999999963 36999999999999999999
Q ss_pred HHHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcchhhhh
Q 044962 669 MMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSK 715 (726)
Q Consensus 669 ~~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~~~~~~ 715 (726)
|.+||.||++.++||+||||+||++|++|+++|+.+|||+.+|....
T Consensus 82 ~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~ 128 (152)
T 2ion_A 82 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999763
No 11
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.96 E-value=1.4e-30 Score=244.82 Aligned_cols=127 Identities=31% Similarity=0.541 Sum_probs=122.1
Q ss_pred CchHHHHHHHHHHHHHHHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhCCCcChHHH
Q 044962 290 KTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERR--QAEGRLLGLLKEASEEGLINASQI 367 (726)
Q Consensus 290 ~~vee~k~~i~~lL~EY~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~--~~~~~i~~LLk~l~~~~lit~~Q~ 367 (726)
+|+++++++|+.+|+||+.+||.+||++|++||++|+|||++|++++.++||++ ...+.+++||+++..++++|++||
T Consensus 1 ~p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 589999999999999999999999999999999999999999999999999975 457889999999999999999999
Q ss_pred HHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCC
Q 044962 368 TKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSE 416 (726)
Q Consensus 368 ~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~ 416 (726)
.+||.|+++.||||.||||+|+++|++|+.+|+.+|||+.+|....|+|
T Consensus 81 ~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p~~ 129 (129)
T 2nsz_A 81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC
T ss_pred HHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCCCC
Confidence 9999999999999999999999999999999999999999999988764
No 12
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.96 E-value=2.2e-30 Score=249.76 Aligned_cols=132 Identities=31% Similarity=0.525 Sum_probs=122.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhCCCcChH
Q 044962 288 KNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERR--QAEGRLLGLLKEASEEGLINAS 365 (726)
Q Consensus 288 ~~~~vee~k~~i~~lL~EY~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~--~~~~~i~~LLk~l~~~~lit~~ 365 (726)
+++|+++++++|+.+|+||+.+||++||++|++||++|+|||++|+++|.++||+. ...+.+++||+++..++++|++
T Consensus 1 ~~~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 1 GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35789999999999999999999999999999999999999999999999999974 5578899999999999999999
Q ss_pred HHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCC--Cccc
Q 044962 366 QITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSS--EPEK 419 (726)
Q Consensus 366 Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~--~~~k 419 (726)
||.+||.|+++.||||.||||+|+++|++|+.+|+.+|||+.+|...+|+ +|||
T Consensus 81 q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~p~~~~~rk 136 (152)
T 2ion_A 81 QMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRSRGRK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC-----
T ss_pred HHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhCCCcccchh
Confidence 99999999999999999999999999999999999999999999999988 8887
No 13
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.92 E-value=1.6e-24 Score=233.88 Aligned_cols=275 Identities=17% Similarity=0.221 Sum_probs=202.2
Q ss_pred CccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc----CCh
Q 044962 424 DTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF----LPA 499 (726)
Q Consensus 424 ~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~----l~~ 499 (726)
.++++++++++.++|+|||++||++|++.|++| |+.|.|+|+||+++|+++|||++.+||++++||++|+ ||+
T Consensus 4 ~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~e---l~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 4 ALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQE---LASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHT---TCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---cCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 568899999999999999999999999999999 8889999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhccccccCchhhHHHHHHHHHHHHhhCCCCc-hhHHHhhhccCCCcchHHHHHHHHHHHHhccccccc
Q 044962 500 DDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAP-QHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGER 578 (726)
Q Consensus 500 ~~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV~Dd~l~p-~~l~~~~~~~~~~~~~g~~~l~~a~~ll~~~~~~~r 578 (726)
++|.+||.++++.++|+.+|+|.|+++||.|+||+|.++++|+ .++.+....+. .+..+...+..+-..+...+|..+
T Consensus 81 ~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~-~~g~~~~fl~~vl~~l~~~~g~~~ 159 (339)
T 1ug3_A 81 AQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLR-PLGKAASLLLEILGLLCKSMGPKK 159 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHH-HHTCHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHcCHHH
Confidence 9999999999999999999999999999999999999999999 55555543332 345566777777777777788889
Q ss_pred ccccccCCCCCC----CCCCChH-----------------------HHHHHHHHHHHHHhhc-CCHHHHHHHHHhhCCCC
Q 044962 579 ILRCWGGGGGSS----RPGWAVE-----------------------DVKDKIGRLLEEYESG-GDVREARRCIKELGMPF 630 (726)
Q Consensus 579 l~~~WG~g~~~~----~~~~~~e-----------------------~l~~ki~~lL~EYl~~-~D~~EA~~Cl~EL~~p~ 630 (726)
+.++|+.++-.- ++....+ ...+++..-|.+.+.. -+.++.+..|++.-.+.
T Consensus 160 l~~~~~~s~l~l~~f~P~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~ 239 (339)
T 1ug3_A 160 VGTLWREAGLSWKEFLPEGQDIGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQ 239 (339)
T ss_dssp HHHHHHHTTCCGGGTSCTTCCHHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHH
T ss_pred HHHHHHHcCCCHHHhCCCchhHHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChh
Confidence 999998655420 0111011 1123455555555544 37788888888886642
Q ss_pred --chHHHHHHHHHHHhcc----cc----h-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHhccccccccccchHHHHH
Q 044962 631 --FHHEIVKKALVSVIEK----KN----E-----RLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFI 695 (726)
Q Consensus 631 --fhhelV~~ai~~~lE~----~~----e-----~~~~LL~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDvP~A~~~l~ 695 (726)
-.|+||+..+...++. .. + ....||+..+ .+.+.-..- +..+.+...+..+-...|.
T Consensus 240 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~pll~~~~----~~~~~ql~~----L~alQ~~~~~~~~~~~~l~ 311 (339)
T 1ug3_A 240 QIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYL----CDEQKELQA----LYALQALVVTLEQPPNLLR 311 (339)
T ss_dssp HHTCHHHHHHHHHHHHHHTEECSSSCEECHHHHHHHHHHHHHHC----CSHHHHHHH----HHHHHHHHHHTTCCTTHHH
T ss_pred hCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHc----CCcHHHHHH----HHHHHHHHHhccChHHHHH
Confidence 2567776665554543 11 1 1234444443 222221111 2223333334444567889
Q ss_pred HHHHHHHHcCCCCcc
Q 044962 696 HYVEKAKTEGWLDSS 710 (726)
Q Consensus 696 ~lv~~~~~~g~l~~~ 710 (726)
.++......++|+.+
T Consensus 312 ~~~~~LYd~dVi~Ee 326 (339)
T 1ug3_A 312 MFFDALYDEDVVKED 326 (339)
T ss_dssp HHHHHHHHTTSSCHH
T ss_pred HHHHHHhCcchhhHH
Confidence 999999999999863
No 14
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=233.08 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=184.5
Q ss_pred CccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCc-chhHHHHHHHHHHhhccCchhHhHHHHHHHhcc----CC
Q 044962 424 DTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLN-EVNAIFVKRLITLAMDRKNREKEMASVLLSSLF----LP 498 (726)
Q Consensus 424 ~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~-~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~----l~ 498 (726)
.-+.+++.|++++||+|||+++|++|++.|++| |+.| .|++.||+.+|++||||++.+|||+|+||++|+ ||
T Consensus 5 ~~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~e---L~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 5 HHSKEELLKLTETVVTEYLNSGNANEAVNGVRE---MRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---hCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 346799999999999999999999999999999 8878 599999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHhhccccccCchhhHHHHHHHHHHHHhhCCCCchhHHHhhhccCCCcchHHHHHHHHHH---------H
Q 044962 499 ADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKS---------L 569 (726)
Q Consensus 499 ~~~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV~Dd~l~p~~l~~~~~~~~~~~~~g~~~l~~a~~---------l 569 (726)
++||.+||.+++++++|+.+|+|+|+++||.|+||||+|+++||+++...... +........++++... +
T Consensus 82 ~~~~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~-G~~~~l~l~vl~~~~k~~G~~~l~~l 160 (364)
T 3l6a_A 82 SDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES-GTHFPLFLLCLQQLAKLQDREWLTEL 160 (364)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG-GTTTTHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc-cchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986432 1112233344433221 1
Q ss_pred HhcccccccccccccCCCCC------------CCCCCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCC--chHHH
Q 044962 570 LNARLSGERILRCWGGGGGS------------SRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPF--FHHEI 635 (726)
Q Consensus 570 l~~~~~~~rl~~~WG~g~~~------------~~~~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~--fhhel 635 (726)
+. .++-++....-.+.-. -.+..|..++.+.+..+|+| .-+.+|-...|++--.|. -.++|
T Consensus 161 ~~--~sgl~l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~---~~~~~~i~~wik~n~~~~~~~~~~f 235 (364)
T 3l6a_A 161 FQ--QSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKL---DPSPQTIYKWIKDNISPKLHVDKGF 235 (364)
T ss_dssp HH--HHTCCSGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHSCHHHHTCHHH
T ss_pred HH--HcCCCHHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHc---CCChHHHHHHHHHhCCcccCCCHHH
Confidence 11 1111222222111100 00011224444444444433 346778888888876543 35567
Q ss_pred HHHHHHHHhcc-------------------cch---------HHHHHHHHHHhCCCCCHHHHHHHHHHHHhccccccccc
Q 044962 636 VKKALVSVIEK-------------------KNE---------RLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDV 687 (726)
Q Consensus 636 V~~ai~~~lE~-------------------~~e---------~~~~LL~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDv 687 (726)
|+..+...++. +.+ .-..||+..+.+.-=..-++..|++++.... +-
T Consensus 236 ir~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~-----~~ 310 (364)
T 3l6a_A 236 VNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNS-----NF 310 (364)
T ss_dssp HHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TC
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-----cc
Confidence 76655544431 111 1234554444332101234667777776432 33
Q ss_pred cchHHHHHHHHHHHHHcCCCCcc
Q 044962 688 PDAKKQFIHYVEKAKTEGWLDSS 710 (726)
Q Consensus 688 P~A~~~l~~lv~~~~~~g~l~~~ 710 (726)
|. ..|..++......++|+.+
T Consensus 311 ~~--~~l~~il~~LYd~DileEe 331 (364)
T 3l6a_A 311 PK--GMLLRFFVHFYDMEIIEEE 331 (364)
T ss_dssp CT--THHHHHHHHHHHTTSSCHH
T ss_pred cH--HHHHHHHHHHHHhhhhhhH
Confidence 43 4556777888999999873
No 15
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=87.99 E-value=2.7 Score=40.30 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccc-ccc
Q 044962 332 VKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCA-SSL 410 (726)
Q Consensus 332 V~~aL~~alE~~~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~-~~~ 410 (726)
+++.|...|.++++.+.|++|++++.+...+|..+|+++... .++.++...+ +. ...
T Consensus 4 ~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~--------------------avl~~i~~~~--~~~~~~ 61 (168)
T 3d3m_A 4 LEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMT--------------------SFLQYISSEV--NPPSDE 61 (168)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHH--------------------HHHHHHHHHH--SCCC--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHH--------------------HHHHHHHHhc--cccccc
Confidence 577888889888889999999999999888888888888777 4454443210 00 000
Q ss_pred ccCCCCcccccCCCccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCchhHhHHHH
Q 044962 411 KSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASV 490 (726)
Q Consensus 411 ~~~~~~~~k~~~~~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~eREl~S~ 490 (726)
....+.|.|.. ........++..++++.|.. ++.+.-+.+|.. +. ..+. + .+.=.-+...
T Consensus 62 ~d~~~~~~k~~--~~~~~~~l~~~~~ll~~~~~-~~~~~q~~lL~a---lq----------~~~~---~-~~~~~~~~~~ 121 (168)
T 3d3m_A 62 TDSSSAPSKEQ--LEQEKQLLLSFKPVMQKFLH-DHVDLQVSALYA---LQ----------VHCY---N-SNFPKGMLLR 121 (168)
T ss_dssp -----CCCHHH--HHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH---HH----------HHHH---H-TTCCTTHHHH
T ss_pred cccccccchhH--HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHH---HH----------HHHH---h-CccHHHHHHH
Confidence 00001222211 12344555567889999664 444444444444 11 0111 1 2223356778
Q ss_pred HHHhcc----CChHHHHHHHH
Q 044962 491 LLSSLF----LPADDVVNGFV 507 (726)
Q Consensus 491 LLs~L~----l~~~~i~~gF~ 507 (726)
+|..|| ++.+.|..=+.
T Consensus 122 il~~LYd~DvleEe~il~W~~ 142 (168)
T 3d3m_A 122 FFVHFYDMEIIEEEAFLAWKE 142 (168)
T ss_dssp HHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHhhcchhhHHHHHHHHh
Confidence 888888 66666554443
No 16
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=64.53 E-value=34 Score=33.81 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCCHHHHH
Q 044962 597 EDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSD------SGHITMNQMM 670 (726)
Q Consensus 597 e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~e~~~~LL~~L~~------~~~it~~q~~ 670 (726)
+++...+..+..||-... -.| ..+|+.+ |++..+|+.+.. ..-|+.+|+.
T Consensus 113 ~~~~~e~~~Lw~EyE~~~-t~E--------------a~~vK~~---------Dkl~~~lqa~~~~g~~w~~~gv~~~q~~ 168 (200)
T 3kh1_A 113 PDQAAEYSALWQEYEARE-TAD--------------ARFADAL---------DRLQPLLHNFETEGGTWKPHGVTRAKVD 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHTC-SHH--------------HHHHHHH---------HHHHHHHHHHHTTSTTTTTTTCBHHHHH
T ss_pred hHHHHHHHHHHHHHHcCC-CHH--------------HHHHHHH---------HHHHHHHHHHHcCCCCccccCccHHHHH
Confidence 568888888999987532 112 2344433 666777777766 3568999999
Q ss_pred HHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCC
Q 044962 671 KGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLD 708 (726)
Q Consensus 671 ~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~ 708 (726)
+.-..+.+ .-|..|+++..++..+++.|||.
T Consensus 169 ~~~~~i~~-------~~~~lw~~~~~~~~~~~~~g~~~ 199 (200)
T 3kh1_A 169 KLLPRIEA-------GSKRLGAYARALVDEAVRRGYLA 199 (200)
T ss_dssp HHHHHHHH-------HCHHHHHHHHHHHHHHHHHTSSB
T ss_pred HHhHHHhh-------cCHHHHHHHHHHHHHHHHcCCCC
Confidence 87555443 35999999999999999999985
No 17
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=55.78 E-value=22 Score=30.47 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhcc---CchhHhHHHHHHHhccCC-hHH
Q 044962 426 DTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDR---KNREKEMASVLLSSLFLP-ADD 501 (726)
Q Consensus 426 ~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldr---k~~eREl~S~LLs~L~l~-~~~ 501 (726)
..++|+++...+|.+|..+++. ++..-.+. |. +.+|...+-- -+-||+. +..|..+ +++
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E-~~Ly~~q~--------fs----~~~iek~i~PEeiV~iHk~~----i~el~~~l~e~ 65 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTE-TSLYQAQK--------FS----RKTIEHQIPPEEIISIHRKV----LKELYPSLPED 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCH-HHHHHHHH--------HH----HHHHHTTCCHHHHHHHHHHH----HHHHCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHcccH-HHHHHHHH--------hh----HHHHHcCCCHHHHHHHHHHH----HHHhcCCChHH
Confidence 4589999999999999999987 44433333 22 2222211110 0134443 3444434 889
Q ss_pred HHHHHHHHHhh
Q 044962 502 VVNGFVMLIES 512 (726)
Q Consensus 502 i~~gF~~ll~~ 512 (726)
+...|+-|++-
T Consensus 66 v~~Sfd~L~Ev 76 (84)
T 1w53_A 66 VFHSLDFLIEV 76 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 18
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=46.27 E-value=1e+02 Score=30.27 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHhhhhhcCCCCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhh------CCCcChHH
Q 044962 293 EDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASE------EGLINASQ 366 (726)
Q Consensus 293 ee~k~~i~~lL~EY~~sgD~~EA~rclreL~~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~------~~lit~~Q 366 (726)
+++...+..+..||-. ++..||. +++.++ .+.-+|+.+.. +.-|+.+|
T Consensus 113 ~~~~~e~~~Lw~EyE~-~~t~Ea~-~vK~~D------------------------kl~~~lqa~~~~g~~w~~~gv~~~q 166 (200)
T 3kh1_A 113 PDQAAEYSALWQEYEA-RETADAR-FADALD------------------------RLQPLLHNFETEGGTWKPHGVTRAK 166 (200)
T ss_dssp HHHHHHHHHHHHHHHH-TCSHHHH-HHHHHH------------------------HHHHHHHHHHTTSTTTTTTTCBHHH
T ss_pred hHHHHHHHHHHHHHHc-CCCHHHH-HHHHHH------------------------HHHHHHHHHHcCCCCccccCccHHH
Confidence 5677888888999976 4455663 333332 22333333322 45679999
Q ss_pred HHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCcc
Q 044962 367 ITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLC 406 (726)
Q Consensus 367 ~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~ 406 (726)
+...-.++.+ ..|.-++++..+++.+++.|||.
T Consensus 167 ~~~~~~~i~~-------~~~~lw~~~~~~~~~~~~~g~~~ 199 (200)
T 3kh1_A 167 VDKLLPRIEA-------GSKRLGAYARALVDEAVRRGYLA 199 (200)
T ss_dssp HHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHTSSB
T ss_pred HHHHhHHHhh-------cCHHHHHHHHHHHHHHHHcCCCC
Confidence 9887555433 57999999999999999999985
No 19
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=39.92 E-value=72 Score=30.26 Aligned_cols=97 Identities=20% Similarity=0.129 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcc-cchhHHHHHHHHHhh---CCCcChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccc
Q 044962 332 VKRAVTMAMERR-QAEGRLLGLLKEASE---EGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCA 407 (726)
Q Consensus 332 V~~aL~~alE~~-~~~~~i~~LLk~l~~---~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~ 407 (726)
.++|-.|-+=.. ++ ..+||.... =.-.+.+|++|.|...-+. =|..+++|...|+.+|+-.+
T Consensus 22 LkKAKLMFfytRYPs----S~~LK~yFpDvkFnr~~TsQLiKWFSNFREF----------yYIQMEKfARQa~seGv~~~ 87 (174)
T 2lmd_A 22 LKKAKLMFFYTRYPS----SNMLKTYFSDVKFNRCITSQLIKWFSNFREF----------YYIQMEKYARQAINDGVTST 87 (174)
T ss_dssp HHHHHHHHTTCCSCH----HHHHHHHTSSCCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHTCSCG
T ss_pred HHhhhhheeeecCCc----HHHHHHhCCchhhhhhhHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHccCCCH
Confidence 455555555433 22 234555432 2334568899999887775 57889999999999999887
Q ss_pred cccccCCCCc---------ccccCCCccHHHHHHHHHHHHHHHHc
Q 044962 408 SSLKSLSSEP---------EKRLLEDTDTKLFKMKAQSIIQEYFL 443 (726)
Q Consensus 408 ~~~~~~~~~~---------~k~~~~~~~~~efkk~~~~ii~EYf~ 443 (726)
.-+....-.. -|.+ +-+.++.|..-++..++|||.
T Consensus 88 ~dl~V~rdsEL~R~LN~HYNk~N-~~evP~~F~~v~~~tLrEFf~ 131 (174)
T 2lmd_A 88 EELSITRDCELYRALNMHYNKAN-DFEVPERFLEVAQITLREFFN 131 (174)
T ss_dssp GGSSSSCTTHHHHHHHHHHCSSC-STTCCHHHHHHHHHHHHHHHH
T ss_pred HHeeecchHHHHHHHHhhccccC-CCcCcHHHHHHHHHHHHHHHH
Confidence 6554321100 1112 344559999999999999986
No 20
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=34.72 E-value=36 Score=37.74 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcccc--hHHHHHHHHHHhCCCCCHHH----HHHHHH
Q 044962 602 KIGRLLEEYESGGDVREARRCIKELGMPFFH-HEIVKKALVSVIEKKN--ERLWGLLKECSDSGHITMNQ----MMKGFG 674 (726)
Q Consensus 602 ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fh-helV~~ai~~~lE~~~--e~~~~LL~~L~~~~~it~~q----~~~Gf~ 674 (726)
-.+.+|.-|...|++++|.+.++++..-.+. ....+.++..+.=+.. +.+..||+.|-+.|...... +..+|.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 3678999999999999999999998643332 3567888887777664 57899999999988765544 445554
Q ss_pred H
Q 044962 675 R 675 (726)
Q Consensus 675 r 675 (726)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 3
No 21
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=32.70 E-value=68 Score=29.91 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=44.8
Q ss_pred cChHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHhcCCccccccccCCCCc---------ccccCCCccHHHHHH
Q 044962 362 INASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEP---------EKRLLEDTDTKLFKM 432 (726)
Q Consensus 362 it~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~---------~k~~~~~~~~~efkk 432 (726)
.+.+|+++.|...-+. =|..+++|...|+.+|+-.+.-+....... -|. -+-+.++.|..
T Consensus 39 ~~TsQLiKWFSNFREF----------yYIQMEKfARQa~seGv~~~~~l~V~rdsEl~r~LN~HYNk~-N~~evP~~Fl~ 107 (152)
T 1mij_A 39 NNTAQLVKWFSNFREF----------YYIQMEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRN-NHIEVPQNFRF 107 (152)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC-------------CHHHHHHHHHHCTT-CCSCCCHHHHH
T ss_pred hhHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHcccCCHHHeeecchHHHHHHHHhhhccc-CCCcCcHHHHH
Confidence 4567888888887775 578899999999999998776543321100 111 24556699999
Q ss_pred HHHHHHHHHHc
Q 044962 433 KAQSIIQEYFL 443 (726)
Q Consensus 433 ~~~~ii~EYf~ 443 (726)
-++..++|||.
T Consensus 108 v~~~tlrEFf~ 118 (152)
T 1mij_A 108 VVESTLREFFR 118 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 22
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=28.87 E-value=9.7e+02 Score=30.12 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=102.6
Q ss_pred HHHHhcc---CChHHHHHHHHHHHhhcccc-------------ccCchh-hHHHHHHHHHHHHhhCCCCchhHHHhhhcc
Q 044962 490 VLLSSLF---LPADDVVNGFVMLIESADDT-------------ALDNPV-VVEDLAMFLARAVVDEVLAPQHLEEIGSQF 552 (726)
Q Consensus 490 ~LLs~L~---l~~~~i~~gF~~ll~~l~Dl-------------~lD~P~-a~~~la~FiARAV~Dd~l~p~~l~~~~~~~ 552 (726)
-++..+. -...+|.+||.+.+++.++- ...++. -....-+.+-|.|..++++.+.+.......
T Consensus 311 lild~lks~l~~~k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h 390 (1323)
T 3s4w_B 311 LVFDVIKSAIRYEKTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTH 390 (1323)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Confidence 3444444 36889999999999998763 233333 456677788999999999999998765422
Q ss_pred CC-CcchHHHHHHHHHHHHhcccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCc
Q 044962 553 LG-AESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFF 631 (726)
Q Consensus 553 ~~-~~~~g~~~l~~a~~ll~~~~~~~rl~~~WG~g~~~~~~~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~f 631 (726)
.. -...-.-.+..|++++..+.. ........+-.|+ ++..+ .++
T Consensus 391 ~~vL~~~f~siL~La~~Ll~S~~~-----------------------~v~~Fg~~lY~~l-----------F~~fd-~~~ 435 (1323)
T 3s4w_B 391 YLVLKDICPSILLLAQTLFHSQDQ-----------------------RIILFGSLLYKYA-----------FKFFD-TYC 435 (1323)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSH-----------------------HHHHHHHHHHHHH-----------HHSSC-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCH-----------------------HHHHHHHHHHHHH-----------HHhcc-chh
Confidence 10 112345677888888864411 1122222222221 11121 144
Q ss_pred hHHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHcCC
Q 044962 632 HHEIVKKALVSVIEKKN---ERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGW 706 (726)
Q Consensus 632 hhelV~~ai~~~lE~~~---e~~~~LL~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~ 706 (726)
..|+|...+.++-.... +..+++|..|+....-.-.-+.-=+..+++.++++. .++.++.|.-|..-|+.++-
T Consensus 436 qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l~~l~--~~QiRklf~iL~~laf~~~~ 511 (1323)
T 3s4w_B 436 QQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILDYLENMS--PQQIRKIFCILSTLAFSQQP 511 (1323)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGGGGCC--HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHcCCCC
Confidence 66888888888766543 235677777775431111111123445677777755 35555555555555665543
No 23
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=24.23 E-value=3.6e+02 Score=30.90 Aligned_cols=89 Identities=10% Similarity=0.151 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCC--ChHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHH-hC
Q 044962 128 LDEFKKKATIIVEEYFATD-DVLSAANELRELRKPN--YNYYFVKRLISIAMD-------RHDKEKEMAAVLLSALY-AD 196 (726)
Q Consensus 128 ~ee~~kk~~~ii~EYf~~~-D~~Ea~~~l~EL~~p~--~~~~~V~~~I~~aLD-------rk~~eRE~~s~LLs~L~-~~ 196 (726)
..++++++.+..+.+|+.. .+++++..++.++.+. .-..+..++|..-+| -..+|=..+++|+=.|. .+
T Consensus 444 ~~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~ 523 (603)
T 4b8b_A 444 NNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQ 523 (603)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHc
Confidence 3679999999999999987 5899999999988764 344555556655555 24555566999999999 48
Q ss_pred CCChHHHHHHHHHHHhhhhh
Q 044962 197 AIDPPQVYRGFIKLVESADD 216 (726)
Q Consensus 197 vls~~~i~~Gf~~lLe~l~D 216 (726)
+++.-.+.-|+..+++.+-+
T Consensus 524 Ll~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 524 LLRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SSCHHHHHHHHHHHHHHHTS
T ss_pred ccCcchHHHHHHHHHHHHhC
Confidence 99999999999999998876
No 24
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=24.14 E-value=1.5e+02 Score=25.55 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhhccCchhHhHHHHHHHhcc-CChHHHHHHHHHHH
Q 044962 432 MKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLF-LPADDVVNGFVMLI 510 (726)
Q Consensus 432 k~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~aldrk~~eREl~S~LLs~L~-l~~~~i~~gF~~ll 510 (726)
.+++.+++.+.++.-.+.++..+.- +-..||-.+|+.|++=.+..-| -- |.|.+|..||.++-
T Consensus 20 ~~vKrl~~~~~~~~v~~~v~i~v~g--------laKvfVgelVE~A~~V~~~~~~--------~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 20 AAIKRLIQSITGTSVSQNVVIAMSG--------ISKVFVGEVVEEALDVCEKWGE--------MPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTTC--------CSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcC--------CCCCCcHHHHHHHHHHH
Confidence 3445555665665555667766644 6778999999999885544322 23 99999999999886
Q ss_pred h
Q 044962 511 E 511 (726)
Q Consensus 511 ~ 511 (726)
.
T Consensus 84 ~ 84 (89)
T 1bh9_B 84 S 84 (89)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=24.02 E-value=1.5e+02 Score=26.68 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHccCCH
Q 044962 426 DTKLFKMKAQSIIQEYFLSGDI 447 (726)
Q Consensus 426 ~~~efkk~~~~ii~EYf~~~D~ 447 (726)
..++|+++...||.+|..+.|.
T Consensus 3 ~~~~~~~~Y~~iL~~yl~~~~E 24 (111)
T 2j6y_A 3 FREVIEQRYHQLLSRYIAELTK 24 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHcccH
Confidence 4588999999999999999984
No 26
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.84 E-value=2.4e+02 Score=31.01 Aligned_cols=70 Identities=7% Similarity=-0.055 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcccc--hHHHHHHHHHHhCCCCCHHHHHH
Q 044962 602 KIGRLLEEYESGGDVREARRCIKELGMPFFH-HEIVKKALVSVIEKKN--ERLWGLLKECSDSGHITMNQMMK 671 (726)
Q Consensus 602 ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fh-helV~~ai~~~lE~~~--e~~~~LL~~L~~~~~it~~q~~~ 671 (726)
-.+.+|.=|...|++++|.+.++++..-.+. ....+.++..+.=+.. +....++..+.+.|+.+......
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3578999999999999999999988642221 2466777777666654 46788999999998876554333
No 27
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=21.59 E-value=1.1e+03 Score=29.64 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhhhhhh-------------hccccc-hHHHHHHHHHHHHHcCCCChHHHHH
Q 044962 183 KEMAAVLLSALYADAIDPPQVYRGFIKLVESADDL-------------IVDIPD-TVDVLALFIARAVVDDILPPAFLKK 248 (726)
Q Consensus 183 RE~~s~LLs~L~~~vls~~~i~~Gf~~lLe~l~DL-------------~lDiP~-a~~~La~fiaraV~d~~lp~~fl~~ 248 (726)
......++..|+.++-....+.+++.+.+++.++- ...++. -....-.++-+.|..|+++...+..
T Consensus 306 ~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~ 385 (1323)
T 3s4w_B 306 KDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDS 385 (1323)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHH
Confidence 33455577777777777889999999999998752 234444 3567778889999999999988877
Q ss_pred Hhh
Q 044962 249 QMA 251 (726)
Q Consensus 249 ~~~ 251 (726)
...
T Consensus 386 ~f~ 388 (1323)
T 3s4w_B 386 AFS 388 (1323)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
Done!