BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044963
         (104 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
 pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
          Length = 402

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 49  KFKKEKRKMFQVPYDA-YTYSQNFDQGFAWDEPDSFSRSFSV----RFADPNRIFL 99
           KFK +   +F VPY A   Y  +F++  A + PD+F  ++++    + AD  ++++
Sbjct: 281 KFKGKAWLIFGVPYTANILYKDDFEK-MAAENPDNFRLTYAISREQKTADGGKVYV 335


>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
           Phosphatase Mu Ectodomain
          Length = 731

 Score = 25.8 bits (55), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 57  MFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLMKSQG 104
           +F  PY    YSQ+    F W++ ++ ++  S  +       L+ + G
Sbjct: 8   LFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASG 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,748,779
Number of Sequences: 62578
Number of extensions: 84447
Number of successful extensions: 246
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 3
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)