Query 044963
Match_columns 104
No_of_seqs 100 out of 112
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12911 OppC_N: N-terminal TM 53.0 10 0.00022 22.6 1.6 16 41-56 3-18 (56)
2 PF08082 PRO8NT: PRO8NT (NUC06 50.8 14 0.0003 28.4 2.3 34 40-73 84-127 (152)
3 PRK14891 50S ribosomal protein 43.5 9.9 0.00022 28.6 0.6 16 39-54 48-63 (131)
4 PF13282 DUF4070: Domain of un 37.2 21 0.00046 26.1 1.4 28 45-72 2-29 (146)
5 PF14824 Sirohm_synth_M: Siroh 21.2 63 0.0014 18.6 1.3 16 35-50 10-25 (30)
6 PF05024 Gpi1: N-acetylglucosa 20.4 59 0.0013 24.7 1.3 27 42-68 142-168 (189)
7 PF12883 DUF3828: Protein of u 18.7 63 0.0014 22.4 1.1 31 44-74 36-67 (120)
8 COG4953 PbpC Membrane carboxyp 16.2 1.1E+02 0.0023 28.9 2.2 35 64-98 341-385 (733)
9 PF06136 DUF966: Domain of unk 11.7 2.4E+02 0.0053 23.5 2.9 61 15-79 6-66 (337)
10 cd08815 Death_TNFRSF25_DR3 Dea 10.5 1.9E+02 0.0041 19.8 1.6 16 37-52 8-23 (77)
No 1
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=52.99 E-value=10 Score=22.60 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=13.5
Q ss_pred hhHHHHHHHHhhcccc
Q 044963 41 LRWIVLLMKFKKEKRK 56 (104)
Q Consensus 41 prWk~lwRRl~r~krr 56 (104)
..|+..||||++.|.-
T Consensus 3 s~~~~~~~~f~~nk~a 18 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLA 18 (56)
T ss_pred CHHHHHHHHHHhCchH
Confidence 3799999999998763
No 2
>PF08082 PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; InterPro: IPR012591 Pre-mRNA-processing-splicing factor 8 is a central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. It interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes. It is part of the U5 snRNP complex, and of U5.4/6 and U5.U4atac/U6atac snRNP complexes in U2- and U12-dependent spliceosomes, respectively. It is also found in a mRNA splicing-dependent exon junction complex (EJC) with SRRM1 where it interacts with U5 snRNP proteins SNRP116 and WDR57/SPF38 [, ].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=50.80 E-value=14 Score=28.42 Aligned_cols=34 Identities=26% Similarity=0.694 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHhhccc--ccc---ccc-CC----chhhhhccCC
Q 044963 40 KLRWIVLLMKFKKEKR--KMF---QVP-YD----AYTYSQNFDQ 73 (104)
Q Consensus 40 ~prWk~lwRRl~r~kr--r~~---~~~-YD----p~SYa~NFD~ 73 (104)
...|.+.|-.++|+|+ +.| +|. +| |++|+.|..+
T Consensus 84 ~aQW~~mW~~mRreKrdr~hfkRmrfPpFDDeEPpldy~dni~d 127 (152)
T PF08082_consen 84 IAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYGDNILD 127 (152)
T ss_pred HHHHHHHHHHHHhcccCCCceeeeecCCCCCCCCCcchhhcccc
Confidence 4689999999999876 233 221 22 7899999976
No 3
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=43.51 E-value=9.9 Score=28.58 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=12.9
Q ss_pred chhhHHHHHHHHhhcc
Q 044963 39 SKLRWIVLLMKFKKEK 54 (104)
Q Consensus 39 ~~prWk~lwRRl~r~k 54 (104)
++.+|..+|||.+.+.
T Consensus 48 RKlkWT~~yRk~~g~~ 63 (131)
T PRK14891 48 RDLEWTEAGRAEKGPA 63 (131)
T ss_pred ccchhHHHHHHHcCch
Confidence 4578999999988764
No 4
>PF13282 DUF4070: Domain of unknown function (DUF4070)
Probab=37.17 E-value=21 Score=26.11 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=20.6
Q ss_pred HHHHHHhhcccccccccCCchhhhhccC
Q 044963 45 VLLMKFKKEKRKMFQVPYDAYTYSQNFD 72 (104)
Q Consensus 45 ~lwRRl~r~krr~~~~~YDp~SYa~NFD 72 (104)
.||.||++++|-+....-|...-..||-
T Consensus 2 ~L~~RL~~EGRLl~~~~gd~~~~~~NFi 29 (146)
T PF13282_consen 2 PLWDRLEREGRLLGDASGDNTDSSTNFI 29 (146)
T ss_pred chHHHHHHhcCCCCCcCccccccccccc
Confidence 4899999999865555566656667776
No 5
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=21.24 E-value=63 Score=18.61 Aligned_cols=16 Identities=25% Similarity=0.106 Sum_probs=12.1
Q ss_pred CCCCchhhHHHHHHHH
Q 044963 35 SEGQSKLRWIVLLMKF 50 (104)
Q Consensus 35 ~~~~~~prWk~lwRRl 50 (104)
|+.|..|++..++|+-
T Consensus 10 STnG~sP~la~~iR~~ 25 (30)
T PF14824_consen 10 STNGKSPRLARLIRKE 25 (30)
T ss_dssp EESSS-HHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHH
Confidence 3588899999998863
No 6
>PF05024 Gpi1: N-acetylglucosaminyl transferase component (Gpi1); InterPro: IPR007720 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both Saccharomyces cerevisiae (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively [].; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=20.40 E-value=59 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=21.9
Q ss_pred hHHHHHHHHhhcccccccccCCchhhh
Q 044963 42 RWIVLLMKFKKEKRKMFQVPYDAYTYS 68 (104)
Q Consensus 42 rWk~lwRRl~r~krr~~~~~YDp~SYa 68 (104)
..+.|||-++.+|..+++-+.|..+|.
T Consensus 142 ~l~sL~~LFrGkK~N~LR~R~Ds~~~~ 168 (189)
T PF05024_consen 142 VLKSLFRLFRGKKYNVLRNRVDSCEYD 168 (189)
T ss_pred HHHHHHHHHcCCcchhhhccccCCCCc
Confidence 568899999988777888888987764
No 7
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=18.67 E-value=63 Score=22.42 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHhhccc-ccccccCCchhhhhccCCC
Q 044963 44 IVLLMKFKKEKR-KMFQVPYDAYTYSQNFDQG 74 (104)
Q Consensus 44 k~lwRRl~r~kr-r~~~~~YDp~SYa~NFD~G 74 (104)
+.++.+|+..-+ .....-|||..+||.+|+.
T Consensus 36 k~~~~~l~~~~~~~~~~~D~D~f~~aQD~~~~ 67 (120)
T PF12883_consen 36 KETIAKLKKIYQLEQGILDFDYFIKAQDYDPD 67 (120)
T ss_dssp HHHHHHHHHHH----HHSSSBTTTTBSS--TT
T ss_pred HHHHHHHHhhhhcccCCcCCCCceecccCChh
Confidence 344444444322 3446899999999999984
No 8
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=16.22 E-value=1.1e+02 Score=28.86 Aligned_cols=35 Identities=31% Similarity=0.601 Sum_probs=24.9
Q ss_pred chhhhhccCCCCCCCC------C----CCCCCCcccccCCCchhh
Q 044963 64 AYTYSQNFDQGFAWDE------P----DSFSRSFSVRFADPNRIF 98 (104)
Q Consensus 64 p~SYa~NFD~G~~~~e------~----d~~~rsFSaRfA~Ps~i~ 98 (104)
|.-|++-||||-.+.| | |+-..+|-+.|..|-.+-
T Consensus 341 PFiY~LA~D~GLI~p~Tll~D~P~~fg~YrP~Nfd~~F~G~Vsvr 385 (733)
T COG4953 341 PFVYGLAFDQGLIHPETLLKDVPTRFGDYRPENFDSNFHGPVSVR 385 (733)
T ss_pred hhhhhhhhccccccccccccCCCccccCcCCccccccccCcchHH
Confidence 5569999999965322 2 234679999999985543
No 9
>PF06136 DUF966: Domain of unknown function (DUF966); InterPro: IPR010369 This is a family of plant proteins confined to monocotyledons and mosses, with unknown function
Probab=11.66 E-value=2.4e+02 Score=23.50 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=38.3
Q ss_pred EecccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhcccccccccCCchhhhhccCCCCCCCC
Q 044963 15 ELDRCCDERRPVNSPPPSSPSEGQSKLRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDE 79 (104)
Q Consensus 15 ~l~r~~~e~~~~~~~~~~s~~~~~~~prWk~lwRRl~r~krr~~~~~YDp~SYa~NFD~G~~~~e 79 (104)
+|+|+--=+|++--.-+-++. .+.+|+-+++||.--+-+-+-..| ..||=.|+-.|..|.|
T Consensus 6 YLsRnGqLEHPHfieV~~~s~---~gL~LRDV~~RL~~LRGkGMp~~y-SWS~KRsYKnGfVW~D 66 (337)
T PF06136_consen 6 YLSRNGQLEHPHFIEVPLSSP---QGLYLRDVKDRLTALRGKGMPDMY-SWSCKRSYKNGFVWHD 66 (337)
T ss_pred EEccCCCCCCCeeEEeccCCC---CCcCHHHHHHHHHHhhCCCcceee-EEeeeccccCCceecc
Confidence 467764434544221222221 238999999999976544443444 6788899999988864
No 10
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=10.48 E-value=1.9e+02 Score=19.82 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=12.8
Q ss_pred CCchhhHHHHHHHHhh
Q 044963 37 GQSKLRWIVLLMKFKK 52 (104)
Q Consensus 37 ~~~~prWk~lwRRl~r 52 (104)
....++||.|.|+|.-
T Consensus 8 ~VP~~~wk~F~R~LGL 23 (77)
T cd08815 8 AVPARRWKEFVRTLGL 23 (77)
T ss_pred cCChHHHHHHHHHcCC
Confidence 4456899999999874
Done!